Query 017062
Match_columns 378
No_of_seqs 174 out of 1157
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 08:18:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 4.6E-16 1.6E-20 124.8 3.6 64 192-255 6-70 (82)
2 1hlo_A Protein (transcription 99.5 2.7E-14 9.1E-19 113.7 5.1 63 192-254 12-76 (80)
3 1nkp_B MAX protein, MYC proto- 99.5 3.7E-14 1.3E-18 113.5 5.3 62 193-254 3-66 (83)
4 1an4_A Protein (upstream stimu 99.5 1.7E-14 5.9E-19 110.4 3.1 55 190-244 3-63 (65)
5 4ati_A MITF, microphthalmia-as 99.5 8.8E-14 3E-18 118.7 7.2 65 188-252 23-91 (118)
6 1nkp_A C-MYC, MYC proto-oncoge 99.4 1E-13 3.4E-18 112.7 5.3 60 193-252 7-69 (88)
7 4h10_B Circadian locomoter out 99.4 6.3E-14 2.1E-18 109.8 3.9 57 192-248 8-65 (71)
8 1a0a_A BHLH, protein (phosphat 99.4 3.3E-14 1.1E-18 108.9 1.3 53 192-244 2-61 (63)
9 1nlw_A MAD protein, MAX dimeri 99.4 4.3E-13 1.5E-17 107.3 6.2 62 193-254 2-66 (80)
10 4h10_A ARYL hydrocarbon recept 99.3 1E-13 3.5E-18 109.2 0.8 53 190-242 7-63 (73)
11 3u5v_A Protein MAX, transcript 99.3 1.5E-12 5E-17 103.3 3.9 57 192-248 5-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.0 6.1E-11 2.1E-15 92.1 2.2 53 192-244 12-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 1.6E-10 5.5E-15 87.6 4.5 53 193-245 3-58 (60)
14 4f3l_A Mclock, circadian locom 98.9 7.4E-10 2.5E-14 108.5 5.5 56 188-243 8-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 2.5E-09 8.7E-14 106.0 3.2 58 186-243 7-68 (387)
16 2lfh_A DNA-binding protein inh 98.5 2.1E-08 7E-13 77.8 1.2 47 196-242 18-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 1.8E-06 6E-11 69.4 6.2 48 204-251 4-55 (83)
18 4aya_A DNA-binding protein inh 97.9 2.1E-05 7.3E-10 64.8 6.0 47 199-245 32-81 (97)
19 1zpv_A ACT domain protein; str 96.9 0.012 4.2E-07 45.6 11.5 67 303-372 4-70 (91)
20 2nyi_A Unknown protein; protei 96.3 0.013 4.5E-07 52.6 8.5 68 303-372 4-73 (195)
21 1u8s_A Glycine cleavage system 96.2 0.016 5.3E-07 51.5 8.8 65 304-372 6-70 (192)
22 2ko1_A CTR148A, GTP pyrophosph 95.7 0.087 3E-06 40.0 9.8 65 304-371 5-69 (88)
23 2nyi_A Unknown protein; protei 95.0 0.087 3E-06 47.2 8.9 66 303-372 92-163 (195)
24 1u8s_A Glycine cleavage system 94.6 0.24 8.2E-06 43.7 10.4 66 304-372 93-166 (192)
25 3p96_A Phosphoserine phosphata 91.5 0.47 1.6E-05 46.4 8.1 68 303-372 11-78 (415)
26 3o1l_A Formyltetrahydrofolate 90.3 1.5 5.2E-05 42.3 10.3 67 303-371 21-89 (302)
27 3lou_A Formyltetrahydrofolate 88.9 1.7 6E-05 41.6 9.5 69 303-371 9-79 (292)
28 2jhe_A Transcription regulator 88.2 1.4 4.9E-05 36.9 7.5 37 306-343 2-38 (190)
29 3obi_A Formyltetrahydrofolate 88.1 2 6.7E-05 41.2 9.3 67 304-372 6-74 (288)
30 3n0v_A Formyltetrahydrofolate 87.9 2 7E-05 41.0 9.2 66 304-372 8-75 (286)
31 2f1f_A Acetolactate synthase i 85.3 2.3 8E-05 37.5 7.5 65 305-373 4-70 (164)
32 2f06_A Conserved hypothetical 81.8 9.7 0.00033 31.5 9.7 58 308-374 76-133 (144)
33 2pc6_A Probable acetolactate s 81.3 2.8 9.7E-05 37.1 6.4 65 305-373 5-71 (165)
34 3nrb_A Formyltetrahydrofolate 80.7 6.1 0.00021 37.7 8.9 66 303-372 6-73 (287)
35 1y7p_A Hypothetical protein AF 73.9 8.5 0.00029 35.8 7.5 64 304-373 4-72 (223)
36 2fgc_A Acetolactate synthase, 70.8 8.5 0.00029 35.0 6.6 63 305-371 30-94 (193)
37 2f06_A Conserved hypothetical 69.4 36 0.0012 27.9 9.9 61 306-375 8-68 (144)
38 2wt7_A Proto-oncogene protein 45.8 32 0.0011 25.3 4.9 39 200-251 1-39 (63)
39 2er8_A Regulatory protein Leu3 39.2 22 0.00075 26.0 3.0 21 235-255 49-69 (72)
40 1hwt_C Protein (heme activator 34.6 19 0.00064 26.9 2.0 22 234-255 57-78 (81)
41 3fx7_A Putative uncharacterize 33.4 76 0.0026 25.7 5.5 40 204-251 47-86 (94)
42 1zme_C Proline utilization tra 30.3 26 0.00089 25.3 2.2 20 235-254 44-63 (70)
43 3he4_B Synzip5; heterodimeric 29.9 61 0.0021 22.3 3.7 23 230-252 5-27 (46)
44 1pd7_B MAD1; PAH2, SIN3, eukar 27.8 66 0.0023 20.2 3.3 20 224-243 2-21 (26)
45 2re1_A Aspartokinase, alpha an 26.4 2.9E+02 0.0099 23.2 9.5 61 303-373 102-165 (167)
46 1pyi_A Protein (pyrimidine pat 25.7 1.4E+02 0.0049 22.6 5.9 23 234-256 47-69 (96)
47 2l5g_A GPS2 protein, G protein 24.8 87 0.003 21.3 3.7 29 224-252 4-32 (38)
48 2lqj_A Mg2+ transport protein; 23.8 1.4E+02 0.0047 23.6 5.5 65 304-371 8-77 (94)
49 3luy_A Probable chorismate mut 23.6 4.8E+02 0.016 25.1 10.4 56 313-371 217-273 (329)
50 1dh3_A Transcription factor CR 21.7 48 0.0017 23.9 2.2 19 235-253 22-40 (55)
51 1xkm_B Distinctin chain B; por 21.4 93 0.0032 19.1 3.0 19 227-245 3-21 (26)
52 2cqn_A Formin-binding protein 20.8 1.5E+02 0.0051 22.7 4.9 24 205-228 10-33 (77)
53 1gd2_E Transcription factor PA 20.3 65 0.0022 24.5 2.7 18 234-251 28-45 (70)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.58 E-value=4.6e-16 Score=124.79 Aligned_cols=64 Identities=27% Similarity=0.403 Sum_probs=59.2
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 017062 192 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI-SKMDRASILGDAIDYLKELLQRINDLHNELESTP 255 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~LrslvP~~-~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~~~ 255 (378)
++..|+.+||+||.+||++|..|+++||.. .|++|++||.+||+||++|+.+++.|+++.+.+.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999986 8999999999999999999999999999876543
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=2.7e-14 Score=113.73 Aligned_cols=63 Identities=27% Similarity=0.477 Sum_probs=58.6
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017062 192 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI--SKMDRASILGDAIDYLKELLQRINDLHNELEST 254 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~LrslvP~~--~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~~ 254 (378)
++..|+.+||+||.+||+.|..|+++||.. .|++|++||..||+||++|++++++|+.+++.+
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999975 699999999999999999999999999988754
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.46 E-value=3.7e-14 Score=113.46 Aligned_cols=62 Identities=27% Similarity=0.457 Sum_probs=56.8
Q ss_pred CccccHHHHHHHHHHHHHHHHHHccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017062 193 PAKNLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIDYLKELLQRINDLHNELEST 254 (378)
Q Consensus 193 ~~~h~~~ER~RR~kmn~~~~~LrslvP~--~~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~~ 254 (378)
+..|+..||+||.+||+.|..|+++||. ..|++|++||..||+||++|+++++.|+.+++.+
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999997 4899999999999999999999999988876544
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=1.7e-14 Score=110.40 Aligned_cols=55 Identities=35% Similarity=0.505 Sum_probs=49.8
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHHccCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 017062 190 KGLPAKNLMAERRRRKKLNDRLYMLRSVVPKIS------KMDRASILGDAIDYLKELLQRI 244 (378)
Q Consensus 190 ~~~~~~h~~~ER~RR~kmn~~~~~LrslvP~~~------K~dKasIL~dAI~YIk~Lq~~v 244 (378)
..++..|+.+||+||.+||+.|..|+++||.+. |++|++||..||+||++|+++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 345688999999999999999999999999764 7899999999999999999764
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.45 E-value=8.8e-14 Score=118.69 Aligned_cols=65 Identities=26% Similarity=0.479 Sum_probs=53.2
Q ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 017062 188 KRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKI----SKMDRASILGDAIDYLKELLQRINDLHNELE 252 (378)
Q Consensus 188 ~k~~~~~~h~~~ER~RR~kmn~~~~~LrslvP~~----~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e 252 (378)
+.+.++..|+.+||+||.+||++|..|+++||.+ .|++|++||..||+||++||++++.|+++.+
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445678999999999999999999999999975 3788999999999999999999999987643
No 6
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=1e-13 Score=112.71 Aligned_cols=60 Identities=25% Similarity=0.434 Sum_probs=54.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 017062 193 PAKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIDYLKELLQRINDLHNELE 252 (378)
Q Consensus 193 ~~~h~~~ER~RR~kmn~~~~~LrslvP~~---~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e 252 (378)
+..|+..||+||.+||+.|..||.+||.. .|++|++||..||+||++|+.+.+.|..+++
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999974 6999999999999999999999888776554
No 7
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.42 E-value=6.3e-14 Score=109.83 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=51.8
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHccCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 017062 192 LPAKNLMAERRRRKKLNDRLYMLRSVVPK-ISKMDRASILGDAIDYLKELLQRINDLH 248 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~LrslvP~-~~K~dKasIL~dAI~YIk~Lq~~v~~L~ 248 (378)
++..|+.+||+||.+||++|..|++|||. ..|+||++||..||+||++||+++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35789999999999999999999999996 4699999999999999999999886553
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.41 E-value=3.3e-14 Score=108.92 Aligned_cols=53 Identities=26% Similarity=0.321 Sum_probs=48.1
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHccCCCC-------CCCChhhHHHHHHHHHHHHHHHH
Q 017062 192 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI-------SKMDRASILGDAIDYLKELLQRI 244 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~LrslvP~~-------~K~dKasIL~dAI~YIk~Lq~~v 244 (378)
++..|+.+||+||.+||..|..|++|||.. ++.+||+||..||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999953 56779999999999999999865
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.38 E-value=4.3e-13 Score=107.25 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=56.3
Q ss_pred CccccHHHHHHHHHHHHHHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017062 193 PAKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIDYLKELLQRINDLHNELEST 254 (378)
Q Consensus 193 ~~~h~~~ER~RR~kmn~~~~~LrslvP~~---~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~e~~ 254 (378)
+..|+..||+||..||+.|..||++||.. .|++|++||..|++||++|+++.+.|+.+++.+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999964 688999999999999999999999998887544
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.35 E-value=1e-13 Score=109.17 Aligned_cols=53 Identities=32% Similarity=0.437 Sum_probs=48.1
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHHccCCCC----CCCChhhHHHHHHHHHHHHHH
Q 017062 190 KGLPAKNLMAERRRRKKLNDRLYMLRSVVPKI----SKMDRASILGDAIDYLKELLQ 242 (378)
Q Consensus 190 ~~~~~~h~~~ER~RR~kmn~~~~~LrslvP~~----~K~dKasIL~dAI~YIk~Lq~ 242 (378)
+.++..|+.+||+||++||+.|..|++|||.+ +|+||++||..||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 33457899999999999999999999999964 799999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.28 E-value=1.5e-12 Score=103.27 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=47.9
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 017062 192 LPAKNLMAERRRRKKLNDRLYMLRSVVPK---ISKM-DRASILGDAIDYLKELLQRINDLH 248 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~LrslvP~---~~K~-dKasIL~dAI~YIk~Lq~~v~~L~ 248 (378)
++..|+..||+||.+||+.|..||.+||. ..|. .|++||..||+||+.|++++++++
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999994 3455 688999999999999999998664
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.03 E-value=6.1e-11 Score=92.11 Aligned_cols=53 Identities=26% Similarity=0.402 Sum_probs=48.4
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 017062 192 LPAKNLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIDYLKELLQRI 244 (378)
Q Consensus 192 ~~~~h~~~ER~RR~kmn~~~~~LrslvP~--~~K~dKasIL~dAI~YIk~Lq~~v 244 (378)
++..|+..||+|+..||+.|..||.+||. ..|++|+.||..||+||..|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45779999999999999999999999996 368999999999999999999754
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.03 E-value=1.6e-10 Score=87.62 Aligned_cols=53 Identities=32% Similarity=0.346 Sum_probs=47.9
Q ss_pred CccccHHHHHHHHHHHHHHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 017062 193 PAKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIDYLKELLQRIN 245 (378)
Q Consensus 193 ~~~h~~~ER~RR~kmn~~~~~LrslvP~~---~K~dKasIL~dAI~YIk~Lq~~v~ 245 (378)
+..++..||+|+..||+.|..||.+||.. .|.+|..||..||+||+.|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999964 589999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.91 E-value=7.4e-10 Score=108.54 Aligned_cols=56 Identities=29% Similarity=0.483 Sum_probs=42.7
Q ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 017062 188 KRKGLPAKNLMAERRRRKKLNDRLYMLRSVVP-KISKMDRASILGDAIDYLKELLQR 243 (378)
Q Consensus 188 ~k~~~~~~h~~~ER~RR~kmn~~~~~LrslvP-~~~K~dKasIL~dAI~YIk~Lq~~ 243 (378)
|++.++..|+.+||+||++||..|..|++||| ..+|+||++||..||.|||.|+..
T Consensus 8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 34555688999999999999999999999999 568999999999999999999764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.75 E-value=2.5e-09 Score=106.04 Aligned_cols=58 Identities=31% Similarity=0.433 Sum_probs=49.5
Q ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 017062 186 EGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVP----KISKMDRASILGDAIDYLKELLQR 243 (378)
Q Consensus 186 ~~~k~~~~~~h~~~ER~RR~kmn~~~~~LrslvP----~~~K~dKasIL~dAI~YIk~Lq~~ 243 (378)
..|.+.++..|+.+||+||.+||+.|..|++||| ...|+||++||..||.|||.|+..
T Consensus 7 ~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 7 QGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cchhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3344455689999999999999999999999999 578999999999999999999843
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.51 E-value=2.1e-08 Score=77.77 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 017062 196 NLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIDYLKELLQ 242 (378)
Q Consensus 196 h~~~ER~RR~kmn~~~~~LrslvP~~---~K~dKasIL~dAI~YIk~Lq~ 242 (378)
-+..||+|+..||+-|..||.+||.. .|++|..||.-||+||..||.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 34678999999999999999999964 689999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.22 E-value=1.8e-06 Score=69.39 Aligned_cols=48 Identities=25% Similarity=0.496 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 017062 204 RKKLNDRLYMLRSVVPKI----SKMDRASILGDAIDYLKELLQRINDLHNEL 251 (378)
Q Consensus 204 R~kmn~~~~~LrslvP~~----~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~ 251 (378)
|..||+++..|..|||.. .|.+|++||..|++||++||+..+.+.++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 589999999999999999999888776653
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.85 E-value=2.1e-05 Score=64.81 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 017062 199 AERRRRKKLNDRLYMLRSVVPK---ISKMDRASILGDAIDYLKELLQRIN 245 (378)
Q Consensus 199 ~ER~RR~kmn~~~~~LrslvP~---~~K~dKasIL~dAI~YIk~Lq~~v~ 245 (378)
.||.|=..||+-|..||.+||. ..|..|..+|.-||+||+.|++-++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 3567778999999999999995 3689999999999999999998664
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.94 E-value=0.012 Score=45.57 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=55.2
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
..+.|.|.|.+|||++.+|..+|.+.|..|.+.+.....+.+.-.+.++. .+ ....++|.++|....
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~-~~--~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS-DE--KQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-SS--CCCHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe-CC--CCCHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999888887777777753 22 457888888887653
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.27 E-value=0.013 Score=52.61 Aligned_cols=68 Identities=13% Similarity=0.268 Sum_probs=52.2
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcc--cCHHHHHHHHHhhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQD--VLPKQIKSVLLDTA 372 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~--v~~e~Lk~~Ll~~~ 372 (378)
..+.|.|.|+.|+|++..|..+|.++|+.|+.+.+.+..+.++-.+.+.. .. .. ...++|++.|...+
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~-~~-~~~~~~~~~l~~~L~~~~ 73 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSL-NA-KDGKLIQSALESALPGFQ 73 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-SS-SSSHHHHHHHHHHSTTCE
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEe-cC-ccchhHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999988776665766642 21 11 12577777776543
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.24 E-value=0.016 Score=51.52 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=53.0
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.+.|.|.|+.|||++.+|..+|.++|++|..+.+....+.++-.+.+... ....++|++.|...+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~----~~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS----PSNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC----HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC----CCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999888877777777431 135677887777654
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.72 E-value=0.087 Score=40.03 Aligned_cols=65 Identities=9% Similarity=0.067 Sum_probs=46.6
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
.+.|.|.+.++||+|.+|..+|.+.|+.|.+..+...++.+...|.++.. .....+++.+.|.+.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~---~~~~l~~l~~~L~~~ 69 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK---NTDKLTTLMDKLRKV 69 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES---SHHHHHHHHHHHTTC
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC---CHHHHHHHHHHHhcC
Confidence 45688889999999999999999999999999998876644445555431 112334555555443
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.04 E-value=0.087 Score=47.17 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=51.0
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN------GFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n------g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
..+.|+|.|+.|||++..|-.+|-++|+.|..+...+.. ++++-.+.+.. .. ... ++|++.|...+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~-~~--~~~-~~l~~~l~~~a 163 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAF-PF--PLY-QEVVTALSRVE 163 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEE-EG--GGH-HHHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEc-CC--Ccc-HHHHHHHHHHH
Confidence 346799999999999999999999999999999999876 45544444432 12 345 88998888654
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.55 E-value=0.24 Score=43.74 Aligned_cols=66 Identities=8% Similarity=-0.015 Sum_probs=50.4
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--------CEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--------GFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--------g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.+.|.|.|+.++|++.+|.++|.+.|++|..+...+.. +.++-.+.+.. . .....++|++.|...+
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~-~--~~~~~~~l~~~l~~~~ 166 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARV-D--SGCNLMQLQEEFDALC 166 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEE-C--TTSCHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeC-C--CCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999888764 24433444432 1 2457889999888654
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=91.45 E-value=0.47 Score=46.42 Aligned_cols=68 Identities=9% Similarity=-0.008 Sum_probs=54.0
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
..+.|+|.|+.|+|+...|...|-++|..|+.++-+...++++-.+.+... ......++|++.|...+
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP--ADVADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC--HHHHTSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec--CCcCCHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999999987776666431 11234578888876653
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=90.35 E-value=1.5 Score=42.34 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=51.1
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~--ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
..+.|.+.|++|+|+...|-..|-+.|+.|+.++-+.. .|+++-.+.+.. +......++|++.|...
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~--~~~~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA--DTLPFDLDGFREAFTPI 89 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG--GGSSSCHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec--CCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999999999999988865 565544443421 22246788898888643
No 27
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=88.90 E-value=1.7 Score=41.65 Aligned_cols=69 Identities=6% Similarity=0.068 Sum_probs=49.3
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~--~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
..+.|.+.|++|+|+...|-..|-+.|+.|+.++-++ ..|+++-.+.+...-.......++|++.|...
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI 79 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHH
Confidence 3567999999999999999999999999999998884 45655444333221002246788888888654
No 28
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=88.19 E-value=1.4 Score=36.89 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=33.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCE
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGF 343 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~ 343 (378)
.|+|.|..|+|+|.+|+.+|.+.++++..+++... |.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence 48899999999999999999999999999999766 55
No 29
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=88.14 E-value=2 Score=41.17 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=50.8
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~--~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.+.|.+.|++|+|+...|-..|-++|+.|..++-.+ ..+.++-.+.+.. .......++|++.|...+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~~~~~~~~L~~~f~~la 74 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA--AAKVIPLASLRTGFGVIA 74 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE--SSCCCCHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc--CCCCCCHHHHHHHHHHHH
Confidence 467999999999999999999999999999998753 3565555444432 222467889998886543
No 30
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=87.91 E-value=2 Score=41.01 Aligned_cols=66 Identities=12% Similarity=-0.026 Sum_probs=50.5
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~--~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
.+.|.+.|++|+|+...|-..|-+.|+.|..++-+. ..++++-.+.+.. .. ....++|++.|...+
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~-~~~~~~L~~~f~~la 75 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ--PD-DFDEAGFRAGLAERS 75 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC--CS-SCCHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec--CC-CCCHHHHHHHHHHHH
Confidence 367999999999999999999999999999998873 4565544444432 22 477899998886543
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=85.28 E-value=2.3 Score=37.52 Aligned_cols=65 Identities=12% Similarity=0.200 Sum_probs=50.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 305 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 305 V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
..|.|....++|+|.+|..+|...|++|.+.++.... +...-+|.+. +.....++|...|.+..+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~----~d~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV----GDEKVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE----SCHHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe----ccHHHHHHHHHHHcCCCC
Confidence 4578889999999999999999999999998887654 5566666664 335567777777776543
No 32
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=81.84 E-value=9.7 Score=31.54 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=41.3
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCC
Q 017062 308 HMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGF 374 (378)
Q Consensus 308 kI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~ 374 (378)
-+.-+.+||.+.+++++|.+.|+.|....++..++.....|..+ +.+...++|.+ +||
T Consensus 76 ~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~--------d~~~A~~~L~~-~g~ 133 (144)
T 2f06_A 76 GISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS--------NMDKCIEVLKE-KKV 133 (144)
T ss_dssp EEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES--------CHHHHHHHHHH-TTC
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeC--------CHHHHHHHHHH-cCC
Confidence 33456899999999999999999997654442345555444431 67777777776 676
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=81.34 E-value=2.8 Score=37.09 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 305 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 305 V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
..|.|....+||.|.+|..+|...|++|.+.++.... +...-+|.+. +.+...++|.+.|.+..+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~----~d~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN----GPDEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE----ECHHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe----ccHHHHHHHHHHhcCCCC
Confidence 4578888999999999999999999999998887554 5666666664 224567777777776543
No 34
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=80.67 E-value=6.1 Score=37.72 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=46.5
Q ss_pred cEEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEeeeecCCcccCHHHHHHHHHhhh
Q 017062 303 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISC--FNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 372 (378)
Q Consensus 303 ~~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~--~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~ 372 (378)
..+.|.+.|++|+|+...|-..|-++|+.|+.++-.. ..++++-.+.+.. ++ ...++|++.|...+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~--~~~~~L~~~f~~la 73 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI--PV--AGVNDFNSAFGKVV 73 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC--CC-----CHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc--CC--CCHHHHHHHHHHHH
Confidence 3567999999999999999999999999999998763 3565554433321 11 23347887775543
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=73.89 E-value=8.5 Score=35.84 Aligned_cols=64 Identities=16% Similarity=0.046 Sum_probs=44.9
Q ss_pred EEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-----CEEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 304 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN-----GFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 304 ~V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n-----g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
.+.|.|.+.+|+|+|.+|+.+|-+.+..|.+.+..... +...-+ ++. ++ . ..++|-+.|.+.-|
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV-~d--~-~Le~LL~kLrkI~g 72 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEI-EG--G-DFEKILERVKTFDY 72 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEE-CS--S-CHHHHHHHHHTCTT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEE-CC--C-CHHHHHHHHhCCCC
Confidence 46688899999999999999999999999999998863 444333 443 12 2 77888887776544
No 36
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=70.85 E-value=8.5 Score=35.00 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 305 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 305 V~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~n--g~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
..|.|..+.+||.|.+|..+|...|+.|.+..+.... +...-+|.+. +.+...++|.+.|.+.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~----g~e~~ieqL~kQL~KL 94 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK----GDDKTIEQIEKQAYKL 94 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE----ECTTHHHHHHHHHTTS
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE----CCHHHHHHHHHHhcCc
Confidence 3577788899999999999999999999998887543 4555666664 2356778888877653
No 37
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=69.44 E-value=36 Score=27.94 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=41.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhCCC
Q 017062 306 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 375 (378)
Q Consensus 306 ~IkI~C~rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G~~ 375 (378)
.|.|.-+.+||.+.+|..+|.+.|+.|.........++-+ ++.. . -+++..++.|.. .||.
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~--~~~~-~-----~d~~~a~~~L~~-~G~~ 68 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGI--LRGI-V-----SDPDKAYKALKD-NHFA 68 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEE-E-----SCHHHHHHHHHH-TTCC
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCE--EEEE-e-----CCHHHHHHHHHH-cCCe
Confidence 4666778999999999999999999999877654433222 2221 1 255777777664 4663
No 38
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.84 E-value=32 Score=25.31 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 017062 200 ERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNEL 251 (378)
Q Consensus 200 ER~RR~kmn~~~~~LrslvP~~~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~ 251 (378)
||++|.+...+..+-++= ..-..||.+|+.++..|+.+.
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEK 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777662 123345555555555555543
No 39
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=39.24 E-value=22 Score=26.03 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCC
Q 017062 235 DYLKELLQRINDLHNELESTP 255 (378)
Q Consensus 235 ~YIk~Lq~~v~~L~~e~e~~~ 255 (378)
.||..|+++|+.|+..++.+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999987664
No 40
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=34.61 E-value=19 Score=26.92 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q 017062 234 IDYLKELLQRINDLHNELESTP 255 (378)
Q Consensus 234 I~YIk~Lq~~v~~L~~e~e~~~ 255 (378)
-.||..|+++|..|+..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999998876654
No 41
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=33.41 E-value=76 Score=25.65 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 017062 204 RKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNEL 251 (378)
Q Consensus 204 R~kmn~~~~~LrslvP~~~K~dKasIL~dAI~YIk~Lq~~v~~L~~e~ 251 (378)
|.+..+.|..|.+.+- -....|=+||..|+++|+-|++.+
T Consensus 47 r~kFee~fe~l~s~l~--------~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 47 RDKFSEVLDNLKSTFN--------EFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHhhHHHhHHHHHHHHHhHHHH
Confidence 4455555555554442 235678899999999999999875
No 42
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=30.31 E-value=26 Score=25.33 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q 017062 235 DYLKELLQRINDLHNELEST 254 (378)
Q Consensus 235 ~YIk~Lq~~v~~L~~e~e~~ 254 (378)
.||..|+++++.|+..++.+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777766544
No 43
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=29.87 E-value=61 Score=22.27 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 017062 230 LGDAIDYLKELLQRINDLHNELE 252 (378)
Q Consensus 230 L~dAI~YIk~Lq~~v~~L~~e~e 252 (378)
+.+--+||++|+++-.+|+.-++
T Consensus 5 vkelknyiqeleernaelknlke 27 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHH
Confidence 45667899999999888876544
No 44
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=27.83 E-value=66 Score=20.18 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=15.7
Q ss_pred CChhhHHHHHHHHHHHHHHH
Q 017062 224 MDRASILGDAIDYLKELLQR 243 (378)
Q Consensus 224 ~dKasIL~dAI~YIk~Lq~~ 243 (378)
+....+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45677899999999877653
No 45
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=26.42 E-value=2.9e+02 Score=23.20 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=39.6
Q ss_pred cEEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEeeeecCCcccCHHHHHHHHHhhhC
Q 017062 303 RAVNIHMFCAR---RPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 373 (378)
Q Consensus 303 ~~V~IkI~C~r---r~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v~~tf~aeq~keg~~v~~e~Lk~~Ll~~~G 373 (378)
+-..|.|.... ++|.+.+++++|.+.|+.|.... +....+...+.. -+.+...++|++.++
T Consensus 102 ~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv~~--------~d~~~av~~Lh~~f~ 165 (167)
T 2re1_A 102 TVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLIDE--------KYMELATRVLHKAFN 165 (167)
T ss_dssp SEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEG--------GGHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEEeH--------HHHHHHHHHHHHHhc
Confidence 34557777764 79999999999999999998854 444444444322 223445555665544
No 46
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.69 E-value=1.4e+02 Score=22.60 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCC
Q 017062 234 IDYLKELLQRINDLHNELESTPT 256 (378)
Q Consensus 234 I~YIk~Lq~~v~~L~~e~e~~~~ 256 (378)
-.||+.|+++++.|+..+..+..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999999887653
No 47
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.81 E-value=87 Score=21.28 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=24.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 017062 224 MDRASILGDAIDYLKELLQRINDLHNELE 252 (378)
Q Consensus 224 ~dKasIL~dAI~YIk~Lq~~v~~L~~e~e 252 (378)
|..+.-|+++=+-|..|+.+++.|++++-
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566789999999999999999998864
No 48
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=23.81 E-value=1.4e+02 Score=23.61 Aligned_cols=65 Identities=5% Similarity=0.015 Sum_probs=41.7
Q ss_pred EEEEEEEcCCC--CChHHHHHHHHHhCCCeEEEEEEEee-CC-E-EEEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 304 AVNIHMFCARR--PGLLLSTMRALDSLGLDIQQAVISCF-NG-F-ALDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 304 ~V~IkI~C~rr--~GlL~~IL~ALEeLgLdV~sA~iS~~-ng-~-v~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
.+.|+|.|.+. .-+..-++++|+..++.+.+..+..+ ++ . +..++.+.. .+ ....++|...|...
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at~-~~--~~~Le~iv~rLs~e 77 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVG-HT--PAKLERLVAELSLQ 77 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEES-CC--HHHHHHHHHHHHHS
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEecC-CC--HHHHHHHHHHHhCC
Confidence 35689999864 56778899999999999999996553 33 3 333444432 11 23455555555543
No 49
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=23.61 E-value=4.8e+02 Score=25.13 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=41.6
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEeeeecCCcccCHHHHHHHHHhh
Q 017062 313 RRPGLLLSTMRALDSLGLDIQQAVISCFNGFA-LDVFRAEQCREGQDVLPKQIKSVLLDT 371 (378)
Q Consensus 313 rr~GlL~~IL~ALEeLgLdV~sA~iS~~ng~v-~~tf~aeq~keg~~v~~e~Lk~~Ll~~ 371 (378)
.+||.|.++|..|...|++.+...+-...+.. -|.|.+. + +| ......++++|...
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD-~-eg-~~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVT-L-DA-APWEERFRDALVEI 273 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEE-E-SS-CTTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEE-E-eC-CcCCHHHHHHHHHH
Confidence 57999999999999999999999998886644 4556664 3 23 33445677766554
No 50
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.67 E-value=48 Score=23.89 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 017062 235 DYLKELLQRINDLHNELES 253 (378)
Q Consensus 235 ~YIk~Lq~~v~~L~~e~e~ 253 (378)
.||.+|+.+|..|+.+...
T Consensus 22 ~~~~~LE~~v~~L~~eN~~ 40 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKT 40 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6888888888888776543
No 51
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=21.39 E-value=93 Score=19.07 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 017062 227 ASILGDAIDYLKELLQRIN 245 (378)
Q Consensus 227 asIL~dAI~YIk~Lq~~v~ 245 (378)
.|-|-+|-+|+.+|.++++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3557788899998888765
No 52
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.80 E-value=1.5e+02 Score=22.69 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHccCCCCCCCChhh
Q 017062 205 KKLNDRLYMLRSVVPKISKMDRAS 228 (378)
Q Consensus 205 ~kmn~~~~~LrslvP~~~K~dKas 228 (378)
+...+....|+..-|+++..++..
T Consensus 10 rl~~~F~~mLk~~~p~I~~~s~We 33 (77)
T 2cqn_A 10 RKESAFKSMLKQAAPPIELDAVWE 33 (77)
T ss_dssp HHHHHHHHHHHTCSSCCCTTCCHH
T ss_pred HHHHHHHHHHHhcCCCCCCCCCHH
Confidence 344567778888877766554443
No 53
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.32 E-value=65 Score=24.54 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 017062 234 IDYLKELLQRINDLHNEL 251 (378)
Q Consensus 234 I~YIk~Lq~~v~~L~~e~ 251 (378)
-.||++|+.+|..|+...
T Consensus 28 ~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357777777777776543
Done!