BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017063
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 92 QKYGRPDDIYLKYRWQPFSCSIPRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHS 151
+KY RP + W+ C+ G EKF ++ L+ + A I S
Sbjct: 23 EKYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADD--LYEKGVLADLEKAFAAREIKS 80
Query: 152 WAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVRE 192
A K K + + LS Q+FG+ + +Y + + DLV++
Sbjct: 81 LASKRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKK 121
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 93 KYGRPDDIYLKYRWQPFSCSIPRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSW 152
KY RP + W+ C+ G EKF ++ L+ + A I S
Sbjct: 1 KYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADD--LYEKGVLADLEKAFAAREIKSL 58
Query: 153 APKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVRE 192
A K K + + LS Q+FG+ + +Y + + DLV++
Sbjct: 59 ASKRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKK 98
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 334 ITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLM 372
+ ++SQ+ +D P GH +DC HW P NQ++
Sbjct: 500 VPQMSQHMEDWIPHLKRGHIEDCGHWTQMDKPTEVNQIL 538
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 334 ITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLM 372
+ ++SQ+ +D P GH +DC HW P NQ++
Sbjct: 281 VPQMSQHMEDWIPHLKRGHIEDCGHWTQMDKPTEVNQIL 319
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 334 ITRLSQYRKDAHPSEYGGHSDDCSHWCLPGLPDTWNQLM 372
+ ++SQ+ +D P GH +DC HW P NQ++
Sbjct: 296 VPQMSQHMEDWIPHLKRGHIEDCGHWTQMDKPTEVNQIL 334
>pdb|4HTY|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
pdb|4HU0|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
In Complex With Cellotetraose
Length = 359
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 21/141 (14%)
Query: 225 HTGRSQPFDYIREGRKLYKDMNRLVAFYK------------GLTTWARWVNFNVDPTKTK 272
HT + + FD+ R + Y +N VAFY+ G+ TWA W N +
Sbjct: 158 HTTKGETFDFWRRVSERYNGINS-VAFYEIFNEPTVFNGRLGIATWAEWKAINEEAITII 216
Query: 273 VFFQGISPTHYEGRDWNEPSKSCSG-----QTKPYFGYKYPAGTPMPWVVLQKV---FSR 324
+ G +W K + Q Y + YP P+ + F
Sbjct: 217 QAHNPKAIALVAGFNWAYDLKEAAANPIDRQNIAYVSHPYPQKVGAPYQANWERDFGFXA 276
Query: 325 LRKPVYLLDITRLSQYRKDAH 345
+ PV+ +I K AH
Sbjct: 277 DKYPVFATEIGYQRATDKGAH 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.480
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,656,010
Number of Sequences: 62578
Number of extensions: 524391
Number of successful extensions: 1378
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 6
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)