BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017064
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 269 bits (687), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 196/328 (59%), Gaps = 2/328 (0%)
Query: 40 FSALMSPPS-KAVVYEREGPPDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGV 98
+SA P +A+VY G P V+++ L V+ +DV VKMLAAPINPSDIN I+G
Sbjct: 5 YSASAEPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGN 64
Query: 99 YPVRPKVPXXXXXXXXXXXXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVS 158
Y + P++P T L PGDWVIP+ GTW++ V + +V
Sbjct: 65 YGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVP 124
Query: 159 KDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSIN 218
D P++ AAT+ VNP TA RML DF L GDS++QN + S VGQ +IQIA G+ +IN
Sbjct: 125 SDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTIN 184
Query: 219 IIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVL 278
++RDR + ++LK LGA+ V TE +L +K ++P+P L NCVGG S++++L
Sbjct: 185 VVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELL 244
Query: 279 KFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLC 338
+ L++GGTMVTYGGM+K+P+ S S IFKDL L+GFWL +W + + +I L
Sbjct: 245 RQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCD 304
Query: 339 LAREGKLKY-DMELVPFNNFQTALSKAL 365
L R G+L VP ++Q+AL ++
Sbjct: 305 LIRRGQLTAPACSQVPLQDYQSALEASM 332
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/318 (42%), Positives = 192/318 (60%), Gaps = 1/318 (0%)
Query: 49 KAVVYEREGPPDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXX 108
+A+VY G P V+++ L V+ +DV VKMLAAPINPSDIN I+G Y + P++P
Sbjct: 28 RALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAV 87
Query: 109 XXXXXXXXXXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAAT 168
T L PGDWVIP+ GTW++ V + +V D P++ AAT
Sbjct: 88 GGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAAT 147
Query: 169 IIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDE 228
+ VNP TA RML DF L GDS++QN + S VGQ +IQIA G+ +IN++RDR +
Sbjct: 148 LGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQK 207
Query: 229 AKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMV 288
++LK LGA+ V TE +L +K ++P+P L NCVGG S++++L+ L++GGTMV
Sbjct: 208 LSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMV 267
Query: 289 TYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKY- 347
TYGGM+K+P+ S S IFKDL L+GFWL +W + + +I L L R G+L
Sbjct: 268 TYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP 327
Query: 348 DMELVPFNNFQTALSKAL 365
VP ++Q+AL ++
Sbjct: 328 ACSQVPLQDYQSALEASM 345
>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|C Chain C, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|F Chain F, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 166/326 (50%), Gaps = 29/326 (8%)
Query: 48 SKAVVYEREGPPDSVI--KMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV 105
++AV+Y + G P V+ + E+ + N+V VK L +PINPSDIN+I+GVYP +P
Sbjct: 26 AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAK 85
Query: 106 PXXXXXXXXXX---------XXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHK 156
+ L GDWVIPS + GTW+++ + + + K
Sbjct: 86 TTGFGTAEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 145
Query: 157 VSKDS-----------PMEYAATIIVNPLTALRMLEDFTTLNSG-DSIVQNGATSIVGQC 204
+ + + ATI VNPLTA ML + L G D +QNG TS VG+
Sbjct: 146 LPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKY 205
Query: 205 IIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANL----- 259
QI + +SI++IRDR DE LK LGA +V TE Q K +
Sbjct: 206 ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSKEFGPTIKEWIKQSG 265
Query: 260 PEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQK 319
E L NCVGG S++ + + L+ G M+TYGGMS +P+T+ TS +IFK+ + GFW+ +
Sbjct: 266 GEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTE 325
Query: 320 WLSSEKATECRNMIDYLLCLAREGKL 345
L + K + + ++ ++ EGKL
Sbjct: 326 LLKNNKELKT-STLNQIIAWYEEGKL 350
>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2
pdb|1H0K|B Chain B, Enoyl Thioester Reductase 2
Length = 364
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 165/326 (50%), Gaps = 29/326 (8%)
Query: 48 SKAVVYEREGPPDSVI--KMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV 105
++AV+Y + G P V+ + E+ + N+V VK L +PINPSDIN+I+GVYP +P
Sbjct: 4 AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAK 63
Query: 106 PXXXXXXXXXX---------XXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHK 156
+ L GDWVIPS + GTW+++ + + + K
Sbjct: 64 TTGFGTAEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 123
Query: 157 VSKDS-----------PMEYAATIIVNPLTALRMLEDFTTLNSG-DSIVQNGATSIVGQC 204
+ + + ATI VNPLTA ML + L G D +QNG TS VG+
Sbjct: 124 LPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKY 183
Query: 205 IIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANL----- 259
QI + +SI++IRDR DE LK LGA +V TE Q K +
Sbjct: 184 ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSKEFGPTIKEWIKQSG 243
Query: 260 PEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQK 319
E L NCVGG S++ + + L+ G M+TYGGMS +P+T+ TS +IFK+ + GFW+ +
Sbjct: 244 GEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTE 303
Query: 320 WLSSEKATECRNMIDYLLCLAREGKL 345
L + K + + + ++ EGKL
Sbjct: 304 LLKNNKELKTSTL-NQIIAWYEEGKL 328
>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|D Chain D, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|E Chain E, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 166/326 (50%), Gaps = 29/326 (8%)
Query: 48 SKAVVYEREGPPDSVI--KMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV 105
++AV+Y + G P V+ + E+ + N+V VK L +P+NPSDIN+I+GVYP +P
Sbjct: 26 AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 85
Query: 106 PXXXXXXXXXX---------XXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHK 156
+ L GDWVIPS + GTW+++ + + + K
Sbjct: 86 TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 145
Query: 157 VSKDS-----------PMEYAATIIVNPLTALRMLEDFTTLNSG-DSIVQNGATSIVGQC 204
+ + + ATI VNPLTA ML + L G D +QNG TS VG+
Sbjct: 146 LPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKY 205
Query: 205 IIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANL----- 259
QI + +SI++IRDR DE LK LGA +V TE Q + +
Sbjct: 206 ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSG 265
Query: 260 PEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQK 319
E L NCVGG S++ + + L+ G M+TYGGMS +P+T+ TS +IFK+ + GFW+ +
Sbjct: 266 GEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTE 325
Query: 320 WLSSEKATECRNMIDYLLCLAREGKL 345
L + K + + ++ ++ EGKL
Sbjct: 326 LLKNNKELKT-STLNQIIAWYEEGKL 350
>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GU7|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis
pdb|1GUF|B Chain B, Enoyl Thioester Reductase From Candida Tropicalis
Length = 364
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 166/326 (50%), Gaps = 29/326 (8%)
Query: 48 SKAVVYEREGPPDSVI--KMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV 105
++AV+Y + G P V+ + E+ + N+V VK L +P+NPSDIN+I+GVYP +P
Sbjct: 4 AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63
Query: 106 PXXXXXXXXXX---------XXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHK 156
+ L GDWVIPS + GTW+++ + + + K
Sbjct: 64 TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 123
Query: 157 VSKDS-----------PMEYAATIIVNPLTALRMLEDFTTLNSG-DSIVQNGATSIVGQC 204
+ + + ATI VNPLTA ML + L G D +QNG TS VG+
Sbjct: 124 LPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKY 183
Query: 205 IIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANL----- 259
QI + +SI++IRDR DE LK LGA +V TE Q + +
Sbjct: 184 ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSG 243
Query: 260 PEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQK 319
E L NCVGG S++ + + L+ G M+TYGGMS +P+T+ TS +IFK+ + GFW+ +
Sbjct: 244 GEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTE 303
Query: 320 WLSSEKATECRNMIDYLLCLAREGKL 345
L + K + + ++ ++ EGKL
Sbjct: 304 LLKNNKELKT-STLNQIIAWYEEGKL 328
>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|B Chain B, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|C Chain C, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
Length = 364
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 165/326 (50%), Gaps = 29/326 (8%)
Query: 48 SKAVVYEREGPPDSVI--KMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV 105
++AV+Y + G P V+ + E+ + N+V VK L +P+NPSDIN+I+GV P +P
Sbjct: 4 AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVNPSKPAK 63
Query: 106 PXXXXXXXXXX---------XXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHK 156
+ L GDWVIPS + GTW+++ + + + K
Sbjct: 64 TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 123
Query: 157 VSKDS-----------PMEYAATIIVNPLTALRMLEDFTTLNSG-DSIVQNGATSIVGQC 204
+ + + ATI VNPLTA ML + L G D +QNG TS VG+
Sbjct: 124 LPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKY 183
Query: 205 IIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANL----- 259
QI + +SI++IRDR DE LK LGA +V TE Q + +
Sbjct: 184 ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSG 243
Query: 260 PEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQK 319
E L NCVGG S++ + + L+ G M+TYGGMS +P+T+ TS +IFK+ + GFW+ +
Sbjct: 244 GEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTE 303
Query: 320 WLSSEKATECRNMIDYLLCLAREGKL 345
L + K + + ++ ++ EGKL
Sbjct: 304 LLKNNKELKT-STLNQIIAWYEEGKL 328
>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase From
Bacillus Thuringiensis
Length = 340
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 131/309 (42%), Gaps = 16/309 (5%)
Query: 44 MSPPSKAVVYEREGPPDSVIKMIELPPVE-VKENDVCVKMLAAPINPSDINRIEGVYPVR 102
MS K + + + G P V++ +E +E +K+N+V V+ML PINPSD+ I G Y R
Sbjct: 1 MSLHGKLIQFHKFGNPKDVLQ-VEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHR 59
Query: 103 PKVPXXXXXXXXXXXXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSP 162
+P +R G V+P GTWQ Y VK + + DS
Sbjct: 60 IPLPNIPGYEGVGIVENVGAFVSRELIGKRVLPL-RGEGTWQEY-VKTSADFVVPIPDSI 117
Query: 163 MEY-AATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR 221
++ AA + +NPLTA + L D ++ N S +G Q+++ I + R
Sbjct: 118 DDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTR 177
Query: 222 DRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFL 281
+ ++ E+L LGA V S + L N + +GG +++ L
Sbjct: 178 N----NKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNELAFSL 233
Query: 282 SQGGTMVTYGGMSKKPIT---VSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLC 338
G +T G +S + + T A + ++ F L+ W + + +L+
Sbjct: 234 RPNGHFLTIGLLSGIQVNWAEIVTKAKVHANI----FHLRHWNDEVSPYKWQETFRHLIR 289
Query: 339 LAREGKLKY 347
L +L++
Sbjct: 290 LVENEQLRF 298
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 116/269 (43%), Gaps = 13/269 (4%)
Query: 52 VYEREGPPDSVIKMIELPPVEV-KENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXX 110
V+E GP V+K+ V + K++ V +K+ A +NP + G Y +P +P
Sbjct: 35 VFEFGGP--EVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPG 92
Query: 111 XXXXXXXXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATII 170
+ GD V S SG + Y + +K+ + + A I
Sbjct: 93 SDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIG 152
Query: 171 VNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAK 230
+ TA R L + +G+S++ +GA+ VG QIAR G+ I AG++E +
Sbjct: 153 IPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLK----ILGTAGTEEGQ 208
Query: 231 EKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG--FNCVGGNSASKVLKFLSQGGTMV 288
+ + GA EVF + EV + + + E + + + SK L LS GG ++
Sbjct: 209 KIVLQNGAHEVF--NHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVI 266
Query: 289 TYGGMSKKPITVSTSAFIFKDLSLKGFWL 317
G S+ I ++ + K+ S+ G L
Sbjct: 267 VVG--SRGTIEINPRDTMAKESSIIGVTL 293
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 30/240 (12%)
Query: 143 WQSYVVKDQSVWHKVSKDSPMEY-----AATIIVNPLTALRMLEDFTTLNSGDSIVQNGA 197
W ++ + D K+ + P + TI + LTA L + + G++++ + A
Sbjct: 95 WTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAA 154
Query: 198 TSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLA 257
VG + QIA+ +G + AGSDE LK +G D F K V L
Sbjct: 155 AGAVGSVVGQIAKLKGCKVVG----AAGSDEKIAYLKQIGFDAAFN-----YKTVNSLEE 205
Query: 258 NLPEPA-LGFNC----VGGNSASKVLKFLSQGGTMV------TYGGMSKKPITVSTSAFI 306
L + + G++C VGG + VL + G + Y M + P S + I
Sbjct: 206 ALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESII 265
Query: 307 FKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDMELVP-FNNFQTALSKAL 365
+K L ++GF + +W + R+++ ++L EGK++Y + F N A + L
Sbjct: 266 YKQLRIEGFIVYRWQGDVREKALRDLMKWVL----EGKIQYHEHVTKGFENMPAAFIEML 321
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 130/325 (40%), Gaps = 43/325 (13%)
Query: 49 KAVVYEREGPPDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXX 108
+AVV G P+ V+++ +LP E +V V++ AA +N D+ +GV + +P
Sbjct: 2 RAVVMRARGGPE-VLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHV 60
Query: 109 XXXXXXXXXXXXXXXXTRLAPGDWVIPSPPSS--------------------------GT 142
APGD V+ +P S GT
Sbjct: 61 LGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGT 120
Query: 143 WQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVG 202
+ YVV ++ K+ E AA I + LTA +M+ D + GD ++ A S V
Sbjct: 121 YAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVS 180
Query: 203 QCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE-VKNVKGLLANLPE 261
IQIA+ G I AGS++ + K LGADE + + K V+ L
Sbjct: 181 VAAIQIAKLFGARVIAT----AGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGA 236
Query: 262 PALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWL 321
+ + G V+K + GG + G S T+ + ++ LS+ L
Sbjct: 237 DKV-VDHTGALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSI--------L 287
Query: 322 SSEKATECRNMIDYLLCLAREGKLK 346
S A++ R + +L EGKLK
Sbjct: 288 GSTMASKSR--LFPILRFVEEGKLK 310
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 34/256 (13%)
Query: 127 LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKD----SPMEYAATIIVNP-LTALRMLE 181
L G V+ SP W ++ + D K+ + P+ A + P LTA L
Sbjct: 78 LPKGTIVLASPG----WTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLL 133
Query: 182 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 241
+ + G++++ N A VG + QIA+ +G + + GSDE L+ LG D V
Sbjct: 134 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAV----GSDEKVAYLQKLGFDVV 189
Query: 242 FTESQLEVKNVKGLLANLPEPA-LGFNC----VGGNSASKVLKFLSQGGTMVTYGGMSKK 296
F K V+ L L + + G++C VGG ++ V+ + + G + G +S
Sbjct: 190 FN-----YKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTY 244
Query: 297 PITVSTSA------FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME 350
T I+++L ++ F + +W + ++++ ++L EGK++Y
Sbjct: 245 NRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVL----EGKIQYKEY 300
Query: 351 LVP-FNNFQTALSKAL 365
++ F N A L
Sbjct: 301 IIEGFENMPAAFMGML 316
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 34/256 (13%)
Query: 127 LAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKD----SPMEYAATIIVNP-LTALRMLE 181
L G V+ SP W ++ + D K+ + P+ A + P LTA L
Sbjct: 99 LPKGTIVLASPG----WTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLL 154
Query: 182 DFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 241
+ + G++++ N A VG + QIA+ +G + + GSDE L+ LG D V
Sbjct: 155 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAV----GSDEKVAYLQKLGFDVV 210
Query: 242 FTESQLEVKNVKGLLANLPEPA-LGFNC----VGGNSASKVLKFLSQGGTMVTYGGMSKK 296
F K V+ L L + + G++C VGG ++ V+ + + G + G +S
Sbjct: 211 FN-----YKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTY 265
Query: 297 PITVSTSA------FIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLCLAREGKLKYDME 350
T I+++L ++ F + +W + ++++ ++L EGK++Y
Sbjct: 266 NRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVL----EGKIQYKEY 321
Query: 351 LVP-FNNFQTALSKAL 365
++ F N A L
Sbjct: 322 IIEGFENMPAAFMGML 337
>pdb|3PI7|A Chain A, Crystal Structure Of A Putative Nadph:quinone Reductase
(Mll3093) From Mesorhizobium Loti At 1.71 A Resolution
Length = 349
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 6/158 (3%)
Query: 164 EYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDR 223
E A IVNPLTA+ D + V S + + II +A+ G I +R
Sbjct: 141 EDGAAXIVNPLTAIAXF-DIVKQEGEKAFVXTAGASQLCKLIIGLAKEEGFRPIVTVR-- 197
Query: 224 AGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQ 283
DE LK +GA V E + + + +P + + V G AS + +
Sbjct: 198 --RDEQIALLKDIGAAHVLNEKAPDFEATLREVXKAEQPRIFLDAVTGPLASAIFNAXPK 255
Query: 284 GGTMVTYGGMSKKPITVSTSA-FIFKDLSLKGFWLQKW 320
+ YG + + IF+ ++GFWL +W
Sbjct: 256 RARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEW 293
>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella
Burnetii
Length = 321
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 138/331 (41%), Gaps = 45/331 (13%)
Query: 49 KAVVYEREGPPDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEG----VYPVRPK 104
KA+ +++ GPP V+K+++ P E ++N +K+ AA +NP D G ++
Sbjct: 8 KAIQFDQFGPP-KVLKLVDTPTPEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKKLKNN 66
Query: 105 VPXXXXXXXXXXXXXXXXXXTRLAPGDWV-----IPSPPSSGTWQSYVVKD-QSVWHKVS 158
+P + GD V P P + YV ++ K+
Sbjct: 67 LPSGLGYDFSGEVIELGSDVNNVNIGDKVXGIAGFPDHPC--CYAEYVCASPDTIIQKLE 124
Query: 159 KDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSIN 218
K S ++ AA++ LTAL+ L + GD ++ + VG IQ+A+ +G I
Sbjct: 125 KLSFLQ-AASLPTAGLTALQALNQ-AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVIT 182
Query: 219 IIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLA-NLPEPALGFNCVGGNSASKV 277
R + LK LGA++ + + LLA + P A+ + VGG+ +
Sbjct: 183 TASKRNHA-----FLKALGAEQCINYHEEDF-----LLAISTPVDAV-IDLVGGDVGIQS 231
Query: 278 LKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLL 337
+ L + G +V S IT + K + F L K + E+ + YL
Sbjct: 232 IDCLKETGCIV-----SVPTITAGRVIEVAKQKHRRAFGLLKQFNIEE-------LHYLG 279
Query: 338 CLAREGKLKYDMELVPFNNFQTALSKALGLH 368
L E KL+ ++ + FQ LS+A+ H
Sbjct: 280 KLVSEDKLRIEISRI----FQ--LSEAVTAH 304
>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|B Chain B, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|C Chain C, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|D Chain D, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|E Chain E, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
Length = 338
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 118/283 (41%), Gaps = 38/283 (13%)
Query: 47 PSKAVVYEREGPPDSV-IKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV 105
P AV +++ G P+++ +K + P E +V +K+ A+ +N +D+ + +G Y P
Sbjct: 6 PMLAVHFDKPGGPENLYVKEVAKP--SPGEGEVLLKVAASALNRADLMQRQGQYDPPPGA 63
Query: 106 PXXXXXXXXXXXXXXXXXXTRLAPG--------DWVIPSPPSSGTWQSYVVKDQSVWHKV 157
L PG D + P G Q YV + + +
Sbjct: 64 -------SNILGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQ-YVTVPEGLLMPI 115
Query: 158 SKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSI 217
+ + AA I LTA ++L + +GD ++ + S VG IQ+ R G +I
Sbjct: 116 PEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAG--AI 173
Query: 218 NIIRDRAGSDEAKEKLKGLGA-------DEVFTESQLEVKNVKGLLANLPEPALGFNCVG 270
++ AGS + + + LGA E F+E+ L K KG NL +C+G
Sbjct: 174 PLV--TAGSQKKLQMAEKLGAAAGFNYKKEDFSEATL--KFTKGAGVNLI-----LDCIG 224
Query: 271 GNSASKVLKFLSQGGTMVTYGGMSKKPITVST-SAFIFKDLSL 312
G+ K + L+ G V YG M I S +FK SL
Sbjct: 225 GSYWEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSL 267
>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (
Tp53i3,Pig3)
Length = 354
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 117/280 (41%), Gaps = 38/280 (13%)
Query: 50 AVVYEREGPPDSV-IKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXX 108
AV +++ G P+++ +K + P E +V +K+ A+ +N +D+ + +G Y P
Sbjct: 25 AVHFDKPGGPENLYVKEVAKP--SPGEGEVLLKVAASALNRADLMQRQGQYDPPPGA--- 79
Query: 109 XXXXXXXXXXXXXXXXTRLAPG--------DWVIPSPPSSGTWQSYVVKDQSVWHKVSKD 160
L PG D + P G Q YV + + + +
Sbjct: 80 ----SNILGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQ-YVTVPEGLLMPIPEG 134
Query: 161 SPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINII 220
+ AA I LTA ++L + +GD ++ + S VG IQ+ R G +I ++
Sbjct: 135 LTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAG--AIPLV 192
Query: 221 RDRAGSDEAKEKLKGLGA-------DEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS 273
AGS + + + LGA E F+E+ L K KG NL +C+GG+
Sbjct: 193 --TAGSQKKLQMAEKLGAAAGFNYKKEDFSEATL--KFTKGAGVNLI-----LDCIGGSY 243
Query: 274 ASKVLKFLSQGGTMVTYGGMSKKPITVST-SAFIFKDLSL 312
K + L+ G V YG M I S +FK SL
Sbjct: 244 WEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSL 283
>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWB|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
Length = 334
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 26/260 (10%)
Query: 46 PPSKAVVYEREGPPDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKV 105
P + V+ E VIK + P + E ++ +K +N + +G+YP
Sbjct: 6 PEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPCEK-- 63
Query: 106 PXXXXXXXXXXXXXXXXXXTRLAPGDWVIPSPPSSGTWQSYV-VKDQSVWHKVSK---DS 161
P T GD V + S+ T+ Y + Q K+ K D
Sbjct: 64 PYVLGREASGTVVAKGKGVTNFEVGDQV--AYISNSTFAQYSKISSQGPVMKLPKGTSDE 121
Query: 162 PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIR 221
++ A ++ LTAL + + GD ++ A VG + Q+ + +G H+I +
Sbjct: 122 ELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAV-- 179
Query: 222 DRAGSDEAKEKLKGLGADEVFTESQ-------LEVKNVKGLLANLPEPALGFNCVGGNSA 274
A +DE + K GA+ + S+ L+ N KG+ A+ F+ VG ++
Sbjct: 180 --ASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDAS-------FDSVGKDTF 230
Query: 275 SKVLKFLSQGGTMVTYGGMS 294
L L + G V++G S
Sbjct: 231 EISLAALKRKGVFVSFGNAS 250
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 12/222 (5%)
Query: 160 DSPMEYAATIIVNP-LTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSIN 218
D P+ Y ++ P +TA + + G+++ + A+ VGQ + Q+A+ G + +
Sbjct: 126 DVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVG 185
Query: 219 IIRDRAGSDEAKEKLKG-LGADEVFTESQLEVKNVKGLLANLPEPA-LGFNCVGGNSASK 276
AGS E + LK G D+ F + E L P + F VGG
Sbjct: 186 ----SAGSKEKVDLLKTKFGFDDAFNYKE-ESDLTAALKRCFPNGIDIYFENVGGKMLDA 240
Query: 277 VLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYL 336
VL ++ G + G +S+ + ++ K +Q ++ S+ + ++++
Sbjct: 241 VLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFV 300
Query: 337 LCLAREGKLKYDMELVPFNNFQTALSKALGL-HGSQ-PKQVI 376
L REGK+ Y ++ + + A +GL HG KQV+
Sbjct: 301 LPHIREGKITYVEDVA--DGLEKAPEALVGLFHGKNVGKQVV 340
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 125 TRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFT 184
T LAPGD V+ P + + V D + ++ AA++ + LTA L D
Sbjct: 284 TGLAPGDRVMGMIPKA--FGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLA 341
Query: 185 TLNSGDSIVQNGATSIVGQCIIQIARHRG 213
L G+S++ + A VG IQ+ARH G
Sbjct: 342 GLRPGESLLVHSAAGGVGMAAIQLARHLG 370
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 100/260 (38%), Gaps = 28/260 (10%)
Query: 76 NDVCVKMLAAPINP---SDINRIEGVY--PVRPKVPXXXXXXXXXXXXXXXXXXTRLAPG 130
NDV VK L +P S + +IEG Y P P + G
Sbjct: 41 NDVVVKNLYLSCDPYMRSRMRKIEGSYVESFAPGSPITGYGVAKVLESGD----PKFQKG 96
Query: 131 DWVIPSPPSSGTWQSY--VVKDQSVWHKVSKDSPMEYAATIIVNP-LTALRMLEDFTTLN 187
D V W+ Y + Q+++ KD P+ Y I+ P +TA + +
Sbjct: 97 DLVW----GMTGWEEYSIITPTQTLFKIHDKDVPLSYYTGILGMPGMTAYAGFHEVCSPK 152
Query: 188 SGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKG-LGADEVFTESQ 246
G+++ + A+ VGQ + Q A+ G + + AGS E + LK G DE F +
Sbjct: 153 KGETVFVSAASGAVGQLVGQFAKMLGCYVVG----SAGSKEKVDLLKSKFGFDEAFNYKE 208
Query: 247 LEVKNVKGLLANLPEPA-LGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTS-- 303
E L P+ + F VGG VL + G + G +S+ + +
Sbjct: 209 -EQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGMISQYNLEQTEGVH 267
Query: 304 ---AFIFKDLSLKGFWLQKW 320
I K + ++GF + +
Sbjct: 268 NLFCLITKRIRMEGFLVFDY 287
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 29/202 (14%)
Query: 166 AATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG 225
AAT V LTA L + L+ G+ ++ + AT VG + IA+ G I AG
Sbjct: 16 AATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGAR----IYTTAG 71
Query: 226 SDEAKEKLKGLGADEV-------FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVL 278
SD +E L LG + V F + LE+ + G+ L N + G + + +
Sbjct: 72 SDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVL-------NSLAGEAIQRGV 124
Query: 279 KFLSQGGTMVTYGGMSKKPITVSTS---AFIFKDLSLKGFWLQKWLSSEKATECRNMIDY 335
+ L+ GG + G KK + S A + K S L L + A R ++ +
Sbjct: 125 QILAPGGRFIELG---KKDVYADASLGLAALAKSASFSVVDLDLNLKLQPA-RYRQLLQH 180
Query: 336 LLCLAREGKLKYDMELVPFNNF 357
+L +GKL E++P F
Sbjct: 181 ILQHVADGKL----EVLPVTAF 198
>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
pdb|1QOR|B Chain B, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
Length = 327
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 129/323 (39%), Gaps = 30/323 (9%)
Query: 51 VVYEREGPPDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXX 110
+ + + G P+ V++ +E P + EN++ V+ A IN D G+YP P +P
Sbjct: 5 IEFHKHGGPE-VLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYP-PPSLPSGLG 62
Query: 111 XXXXXXXXXXXXXXTRLAPGDWVIPSPPSSGTWQSY--VVKDQSVWHKVSKDSPMEYAAT 168
+ GD V+ + + G + S ++ D++ + E AA
Sbjct: 63 TEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAI--LPAAISFEQAAA 120
Query: 169 IIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDE 228
+ LT +L + + + + A VG Q A+ G I + + +
Sbjct: 121 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTV---GTAQK 177
Query: 229 AKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALG------FNCVGGNSASKVLKFLS 282
A+ LK GA +V + + L+ L E G ++ VG ++ + L L
Sbjct: 178 AQSALKA-GAWQVINYRE------EDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQ 230
Query: 283 QGGTMVTYGGMSKKPITVSTSAFIFK-DLSLKGFWLQKWLSS-EKATECRNMIDYLLCLA 340
+ G MV++G S V+ K L + LQ ++++ E+ TE N L L
Sbjct: 231 RRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNE---LFSLI 287
Query: 341 REGKLKYDM---ELVPFNNFQTA 360
G +K D+ + P + Q A
Sbjct: 288 ASGVIKVDVAEQQKYPLKDAQRA 310
>pdb|4DVJ|A Chain A, Crystal Structure Of A Putative Zinc-Dependent Alcohol
Dehydrogenase Protein From Rhizobium Etli Cfn 42
pdb|4DVJ|B Chain B, Crystal Structure Of A Putative Zinc-Dependent Alcohol
Dehydrogenase Protein From Rhizobium Etli Cfn 42
Length = 363
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 130/348 (37%), Gaps = 36/348 (10%)
Query: 49 KAVVYEREGP--PDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVP 106
KAV Y + P D+ + IELP +D+ V++ A +NP D Y VR P
Sbjct: 24 KAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVD-------YKVRRSTP 76
Query: 107 XXXXX------XXXXXXXXXXXXXTRLAPGDWVI--PSPPSSGTWQSYVVKDQSVWHKVS 158
T PGD V S GT + + D+ + +
Sbjct: 77 PDGTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKP 136
Query: 159 KDSPMEYAATIIVNPLTALRMLEDFTTLN-----SGDSIVQNGATSIVGQCIIQIARHRG 213
K AA + + +TA D +N + +I+ G VG +QIAR R
Sbjct: 137 KTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQR- 195
Query: 214 IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGN- 272
+ +I A E +E +K LGA V S+ V L L PA F+ +
Sbjct: 196 -TDLTVIA-TASRPETQEWVKSLGAHHVIDHSKPLAAEVAAL--GLGAPAFVFSTTHTDK 251
Query: 273 SASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG--FWLQKWLSSEKATECR 330
A+++ ++ G + P F K +S+ + + + +E
Sbjct: 252 HAAEIADLIAPQGRFC----LIDDPSAFDIXLFKRKAVSIHHELXFTRPXFGTPDXSEQG 307
Query: 331 NMIDYLLCLAREGKLKYDM--ELVPFNNFQTALSKALGLHGSQPKQVI 376
+++ + L EG+L+ + L P N + AL G+ +V+
Sbjct: 308 RLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTARGKVV 355
>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
pdb|4A27|B Chain B, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
Length = 349
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 9/164 (5%)
Query: 143 WQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVG 202
W V +K+ D AA +N +TA ML + L G S++ + A VG
Sbjct: 97 WAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVG 156
Query: 203 QCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEP 262
Q + Q+ N+ S E +K +F + V+ VK + A +
Sbjct: 157 QAVAQLCST----VPNVTVFGTASTFKHEAIKD-SVTHLFDRNADYVQEVKRISAEGVDI 211
Query: 263 ALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFI 306
L +C+ G++ K L L GT + YG S +T T +F
Sbjct: 212 VL--DCLCGDNTGKGLSLLKPLGTYILYG--SSNMVTGETKSFF 251
>pdb|3IUP|A Chain A, Crystal Structure Of Putative Nadph:quinone Oxidoreductase
(Yp_296108.1) From Ralstonia Eutropha Jmp134 At 1.70 A
Resolution
pdb|3IUP|B Chain B, Crystal Structure Of Putative Nadph:quinone Oxidoreductase
(Yp_296108.1) From Ralstonia Eutropha Jmp134 At 1.70 A
Resolution
Length = 379
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 167 ATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGS 226
A+ VNPLTAL +E L ++V A S +GQ + QI GI +NI+R +
Sbjct: 151 ASSFVNPLTALGXVET-XRLEGHSALVHTAAASNLGQXLNQICLKDGIKLVNIVRKQ--- 206
Query: 227 DEAKEKLKGLGADEV 241
E + LK GA V
Sbjct: 207 -EQADLLKAQGAVHV 220
>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase
Length = 333
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 10/161 (6%)
Query: 156 KVSKDSPME--YAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRG 213
KV KD ++ + A +++ +TA +L + GD ++ + A +G ++ ARH G
Sbjct: 111 KVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLG 170
Query: 214 IHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNS 273
I + ++E E + LG S + V + + ++ +G ++
Sbjct: 171 ATVIGTVS----TEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDT 226
Query: 274 ASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKG 314
K L L G YG S V+ + +DL ++G
Sbjct: 227 LQKSLDCLRPRGMCAAYGHASG----VADPIRVVEDLGVRG 263
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Query: 144 QSYVVKDQSVWHKVS-KDSPM-EYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIV 201
Q Y + + ++KV +P+ Y + + + +TA L D +G+++V +GA V
Sbjct: 103 QDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAV 162
Query: 202 GQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLEVKN---VKGLLAN 258
G QIAR +G + I G+++ + ++ LG D ++ KN GL
Sbjct: 163 GSVAGQIARLKGCRVVGIA---GGAEKCRFLVEELGFD-----GAIDYKNEDLAAGLKRE 214
Query: 259 LPEPA-LGFNCVGGNSASKVLKFLSQGGTMVTYGGMSK 295
P+ + F+ VGG VL ++ +V G +S+
Sbjct: 215 CPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQ 252
>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 116/305 (38%), Gaps = 49/305 (16%)
Query: 49 KAVVYEREGPPDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVR---PKV 105
KA V +R G P +++++LP E +E +V +++ A +N +D G Y R P +
Sbjct: 2 KAWVLKRLGGP---LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFI 58
Query: 106 PXXXXXXXXXXXXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEY 165
P + G P G + V ++ SP E
Sbjct: 59 PGMEV--------------VGVVEGRRYAALVPQGGLAERVAVPKGALLPLPEGLSP-EE 103
Query: 166 AATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG 225
AA V+ LTA L+ G+ ++ A +G +Q+AR G+ + A
Sbjct: 104 AAAFPVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLA-----AA 157
Query: 226 SDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEPALGFNC------VGGNSASKVL 278
S K L LGA+E T A +PE A + V G + L
Sbjct: 158 SRPEKLALPLALGAEEAAT------------YAEVPERAKAWGGLDLVLEVRGKEVEESL 205
Query: 279 KFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLC 338
L+ GG +V G + + + ++L++ GFWL L E + +LL
Sbjct: 206 GLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVE--EALGFLLP 263
Query: 339 -LARE 342
L RE
Sbjct: 264 RLGRE 268
>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 114/305 (37%), Gaps = 49/305 (16%)
Query: 49 KAVVYEREGPPDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVR---PKV 105
KA V +R G P +++++LP E +E +V +++ A +N +D G Y R P +
Sbjct: 2 KAWVLKRLGGP---LELVDLPEPEAEEGEVVLRVEAVGLNFADHLXRLGAYLTRLHPPFI 58
Query: 106 PXXXXXXXXXXXXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEY 165
P P G + V ++ SP E
Sbjct: 59 PGXEVVGVVEGRRYAALV--------------PQGGLAERVAVPKGALLPLPEGLSP-EE 103
Query: 166 AATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAG 225
AA V+ LTA L+ G+ ++ A +G +Q+AR G+ + A
Sbjct: 104 AAAFPVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAXGLRVLA-----AA 157
Query: 226 SDEAKEKLK-GLGADEVFTESQLEVKNVKGLLANLPEPALGFNC------VGGNSASKVL 278
S K L LGA+E T A +PE A + V G + L
Sbjct: 158 SRPEKLALPLALGAEEAAT------------YAEVPERAKAWGGLDLVLEVRGKEVEESL 205
Query: 279 KFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSLKGFWLQKWLSSEKATECRNMIDYLLC 338
L+ GG +V G + + ++L++ GFWL L E + +LL
Sbjct: 206 GLLAHGGRLVYIGAAEGEVAPIPPLRLXRRNLAVLGFWLTPLLREGALVE--EALGFLLP 263
Query: 339 -LARE 342
L RE
Sbjct: 264 RLGRE 268
>pdb|1TT7|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1Y9E|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
Length = 330
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 24/187 (12%)
Query: 129 PGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNS 188
PGDW++P P Q+ +K+ V Y L+ R+ ++ +
Sbjct: 109 PGDWLVPLP------QNLSLKEAXV-----------YGTAGFTAALSVHRLEQNGLSPEK 151
Query: 189 GDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEVFTESQLE 248
G S++ GAT VG + RG + G+ EA + LK LGA EV + +
Sbjct: 152 G-SVLVTGATGGVGGIAVSXLNKRGYDVVA----STGNREAADYLKQLGASEVISREDVY 206
Query: 249 VKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFK 308
+K L + A+ + VGG + +L + GG++ G + + FI +
Sbjct: 207 DGTLKALSKQQWQGAV--DPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILR 264
Query: 309 DLSLKGF 315
+SL G
Sbjct: 265 GVSLLGI 271
>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3UOG|B Chain B, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 363
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 72/201 (35%), Gaps = 28/201 (13%)
Query: 63 IKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXXXXXXXX 122
+K+ E P E E+D+ V+ LA +N D +E + P
Sbjct: 41 LKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGXGLDLAFPFVPASDXSGVVEAVGK 100
Query: 123 XXTRLAPGDWVIPS----------PPSS-------------GTWQSYVVKDQSVWHKVSK 159
TR PGD VI + P + G YVV + + K
Sbjct: 101 SVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPK 160
Query: 160 DSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINI 219
A+T+ LTA L + L +GD +V G T V +QIA+ G I
Sbjct: 161 SLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVT 219
Query: 220 IRDRAGSDEAKEKLKGLGADE 240
R E ++ LGAD
Sbjct: 220 SSSR----EKLDRAFALGADH 236
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 7/142 (4%)
Query: 174 LTALRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKL 233
L+ R+ E T G +V GAT VG + RG + G + L
Sbjct: 136 LSIHRLEEHGLTPERGPVLV-TGATGGVGSLAVSXLAKRGY----TVEASTGKAAEHDYL 190
Query: 234 KGLGADEVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGM 293
+ LGA EV + + ++ L + A + VGG + + VL GG + G
Sbjct: 191 RVLGAKEVLAREDVXAERIRPL--DKQRWAAAVDPVGGRTLATVLSRXRYGGAVAVSGLT 248
Query: 294 SKKPITVSTSAFIFKDLSLKGF 315
+ + FI + +SL G
Sbjct: 249 GGAEVPTTVHPFILRGVSLLGI 270
>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh
pdb|1O8C|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|B Chain B, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|C Chain C, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|D Chain D, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
Length = 345
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 18/140 (12%)
Query: 180 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD 239
LED IV GA+ VG + + G + + +G + E LK LGA
Sbjct: 159 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAV----SGRESTHEYLKSLGAS 214
Query: 240 EV-----FTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMS 294
V F ES+ K V A + VG +KVL ++ GG + G
Sbjct: 215 RVLPRDEFAESRPLEKQVW---------AGAIDTVGDKVLAKVLAQMNYGGCVAACGLAG 265
Query: 295 KKPITVSTSAFIFKDLSLKG 314
+ + FI +++ L+G
Sbjct: 266 GFTLPTTVMPFILRNVRLQG 285
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 126 RLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTT 185
R A G V+ P+ G S ++ + W +V +E AA++ + TA L
Sbjct: 1606 RDASGRRVMGMVPAEGLATSVLLLQHATW-EVPSTWTLEEAASVPIVYTTAYYSLVVRGR 1664
Query: 186 LNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLK 234
+ G+S++ + + VGQ I IA RG + GS E + L+
Sbjct: 1665 MQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTV----GSAEKRAYLQ 1709
>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From
Rhizobium Etli Cfn 42
pdb|4DUP|B Chain B, Crystal Structure Of A Quinone Oxidoreductase From
Rhizobium Etli Cfn 42
Length = 353
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 64/182 (35%), Gaps = 7/182 (3%)
Query: 57 GPPDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXXXXXXXXXX 116
GP VI LP E +V V+ A +N DI + +G YP
Sbjct: 39 GPDVXVIGKRPLPVA--GEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGE 96
Query: 117 XXXXXXXXTRLAPGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYAATIIVNPLTA 176
+ A GD V + G + Y + K AA + T
Sbjct: 97 IVGVGPGVSGYAVGDKVC-GLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTV 155
Query: 177 LRMLEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGL 236
L L G+S++ +G TS +G IQ+AR G + AGS E + L
Sbjct: 156 WANLFQXAGLTEGESVLIHGGTSGIGTTAIQLARAFGAE----VYATAGSTGKCEACERL 211
Query: 237 GA 238
GA
Sbjct: 212 GA 213
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 128 APGDWVIPSPPSSGTWQSYVVKDQSVWHKVSKDSPMEYA-ATIIVNPLTALR-------- 178
PGD+V P SG + ++++ + V+ D+P ++A AT +V A+
Sbjct: 336 GPGDFVSRGMPGSGAALLFRLQERRIQAVVAVDAPRDFALATRLVEARAAIEPARLADLS 395
Query: 179 -MLEDFTTLNSGD 190
+ DF N GD
Sbjct: 396 NSMRDFVRANEGD 408
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 83/220 (37%), Gaps = 36/220 (16%)
Query: 49 KAVVYEREGPPDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXX 108
KA V E+ P IK +E P + E V V++ A + +D++ G +PV+PK+P
Sbjct: 2 KAAVVEQFKEPLK-IKEVEKPTISYGE--VLVRIKACGVCHTDLHAAHGDWPVKPKLPLI 58
Query: 109 XXXXXXXXXXXXXXXXTRLAPGDWV-IPSPPSSGTWQSYVVKDQSVWHKVSKDS------ 161
T L GD V IP S+ Y + Q + K++
Sbjct: 59 PGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDG 118
Query: 162 --------------------PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIV 201
E AA I +T + L+ T G+ + G +
Sbjct: 119 GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALK-VTGAKPGEWVAIYGIGGL- 176
Query: 202 GQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 241
G +Q A+ G +N++ G DE E K LGAD V
Sbjct: 177 GHVAVQYAKAMG---LNVVAVDIG-DEKLELAKELGADLV 212
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 49 KAVVYEREGPPDSVIKMIELPPVEVKENDVCVKMLAAPINPSDINRIEGVYPVRPKVPXX 108
KA V E+ P IK +E P + E V V++ A + +D++ G +PV+PK+P
Sbjct: 2 KAAVVEQFKEPLK-IKEVEKPTISYGE--VLVRIKACGVCHTDLHAAHGDWPVKPKLPLI 58
Query: 109 XXXXXXXXXXXXXXXXTRLAPGDWV-IPSPPSSGTWQSYVVKDQSVWHKVSKDS------ 161
T L GD V IP S+ Y + Q + K++
Sbjct: 59 PGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDG 118
Query: 162 --------------------PMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGATSIV 201
E AA I +T + L+ T G+ + G
Sbjct: 119 GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALK-VTGAKPGEWVAIYGIGGF- 176
Query: 202 GQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGADEV 241
G +Q A+ G +N++ G DE E K LGAD V
Sbjct: 177 GHVAVQYAKAMG---LNVVAVDIG-DEKLELAKELGADLV 212
>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
pdb|4ILK|B Chain B, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
Length = 359
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 19/180 (10%)
Query: 139 SSGTWQSY-VVKDQSVWHKVSKDSPMEYAATIIVNPLTALRMLEDFTTLNSGDSIVQNGA 197
+ G + Y VV ++ W K+ + +YA +++ P T + D+++ GA
Sbjct: 133 ADGGFSEYAVVPAKNAW-KIPEAVADQYA--VMIEPFTIAANVTGHGQPTENDTVLVYGA 189
Query: 198 TSIVGQCIIQIARHRGIHSIN--IIRDRAGSDEAKEKLKGLGADEVFTESQL---EVKNV 252
I G I+Q+ + G++++ I+ DR DE EK K GAD SQ E
Sbjct: 190 GPI-GLTIVQVLK--GVYNVKNVIVADRI--DERLEKAKESGADWAINNSQTPLGESFAE 244
Query: 253 KGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITVSTSAFIFKDLSL 312
KG+ +P L + S K L+ + G S +P V K+LS+
Sbjct: 245 KGI-----KPTLIIDAACHPSILKEAVTLASPAARIVLMGFSSEPSEVIQQGITGKELSI 299
>pdb|3V7A|F Chain F, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
pdb|3V7A|E Chain E, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
Length = 223
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 205 IIQIARHR---GIHSINIIRDRAGSDEAKEKLKG---LGADEVFTESQLEVKNVKGLLAN 258
+I+ + R G+ I +I R+G + EK KG L AD+ + + +++ ++
Sbjct: 33 LIEWVKQRPGQGLEWIGVINPRSGDTNSNEKFKGKAILTADKSSSTAYMQLSSLTS---- 88
Query: 259 LPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPITV 300
+ A+ F G +A + + Q GT VT P +V
Sbjct: 89 -DDSAVYFCARSGTTAYFAMDYWGQ-GTSVTVSSAKTTPPSV 128
>pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
pdb|1A77|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii
Length = 326
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 138 PSSGTWQ-SYVVKDQSVWHKVSKD-SPMEYAATIIVNPLTALRMLEDFTTLNS 188
PS G Q SY+ K VW VS+D + Y A +V LT + + + LN
Sbjct: 150 PSEGEAQASYMAKKGDVWAVVSQDYDALLYGAPRVVRNLTTTKEMPELIELNE 202
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
Query: 180 LEDFTTLNSGDSIVQNGATSIVGQCIIQIARHRGIHSINIIRDRAGSDEAKEKLKGLGAD 239
LED +V GA+ VG + + G + +G + LK LGA+
Sbjct: 138 LEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAV----SGRESTHGYLKSLGAN 193
Query: 240 EVFTESQLEVKNVKGLLANLPEPALGFNCVGGNSASKVLKFLSQGGTMVTYGGMSKKPIT 299
+ S+ E + L L A+ + VG +KVL + GG + G +
Sbjct: 194 RIL--SRDEFAESRPLEKQLWAGAI--DTVGDKVLAKVLAQXNYGGCVAACGLAGGFALP 249
Query: 300 VSTSAFIFKDLSLKG 314
+ FI +++ L+G
Sbjct: 250 TTVXPFILRNVRLQG 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,891,235
Number of Sequences: 62578
Number of extensions: 371792
Number of successful extensions: 1091
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 51
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)