BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017065
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
Phosphoinositide Phosphatase Function
Length = 505
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 161/318 (50%), Gaps = 22/318 (6%)
Query: 62 KIRTIFGVVGVLKLLAGSYLIVITERECVGSYLGHPIYKVASLKILPCDHSLNNSSAEQK 121
++ I ++G +KL Y I+ E G + GH Y+V I+ NS + +
Sbjct: 52 EVVKIASLMGFIKLKLNRYAIIANTVEETGRFNGHVFYRVLQHSIVSTKF---NSRIDSE 108
Query: 122 KVEAEFSCLLKLAERTPGLYFSYDTNLTLSVQRLNTLGDESKLLPLWRQAEPRFLWNNYL 181
EAE+ LL+L + YFSY +LT S+QR +G + W+ A+ RF WN+YL
Sbjct: 109 --EAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGPAAS----WKTADERFFWNHYL 162
Query: 182 MEAL-----IDNKLDPFLLPVIQGSFHHFQTAIGRDIIDVTLIARRCTRRNGTRMWRRGA 236
E L D ++D F+ PVI G + I + LI RR R GTR +RRG
Sbjct: 163 TEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGV 222
Query: 237 DSDGYVANFVETEQVVQMNG------FMASFVQVRGSIPFLWEQTVDLTYKPKFEILRAE 290
D DG V NF ETEQ++ + SF+Q RGS+P W + +L YKP ++ E
Sbjct: 223 DKDGNVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAEINNLKYKPN--LVLGE 280
Query: 291 EAPRVVERHFLDLRKKYGNVLAVDLVNKHGGEGRLCENFGNAMQNVASDDIRYLHFDFHR 350
+ ++HF ++ YG+ V+LVN+ G E + E + + + + I Y++FDFH
Sbjct: 281 NSLDATKKHFDQQKELYGDNYLVNLVNQKGHELPVKEGYESVVHALNDPKIHYVYFDFHH 340
Query: 351 ICGHVHFERLSILFEQIE 368
C + + R+ +L + +E
Sbjct: 341 ECRKMQWHRVKLLIDHLE 358
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 270 FLWEQTVDLTYKPKFEILRAEEAPRVVERH-------FLDLRKKYGNVLAVDLVNKHG 320
FL E+ +L + E LRA AP VV + F+D R+ G+ AV+ V+ G
Sbjct: 191 FLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVDGRRVEGSAFAVEAVDPVG 248
>pdb|4DDP|A Chain A, Crystal Structure Of Beclin 1 Evolutionarily Conserved
Domain(Ecd)
Length = 210
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 155 LNTLGDESKLLPLWRQAEPRFLWNNYLMEALI 186
L +L D+SK LPL+ RF W+N A++
Sbjct: 99 LESLTDKSKELPLYCSGGLRFFWDNKFDHAMV 130
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 21 PDQFVVEPTDGSSGSALAISRADGSMNLIHEVPEC 55
PD ++EPT G++G ALA+ A + +PE
Sbjct: 66 PDTIILEPTSGNTGIALAMVCAARGYRCVLTMPET 100
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 21 PDQFVVEPTDGSSGSALAISRADGSMNLIHEVPEC 55
PD ++EPT G++G ALA+ A + +PE
Sbjct: 66 PDTIILEPTSGNTGIALAMVCAARGYRCVLTMPET 100
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 21 PDQFVVEPTDGSSGSALAISRADGSMNLIHEVPEC 55
PD ++EPT G++G ALA+ A + +P+
Sbjct: 67 PDTIILEPTSGNTGIALAMVSAARGYKCVLTMPDT 101
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 21 PDQFVVEPTDGSSGSALAISRADGSMNLIHEVPEC 55
PD ++EPT G++G ALA+ A + +P+
Sbjct: 67 PDTIILEPTSGNTGIALAMVSAARGYKCVLTMPDT 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,446,673
Number of Sequences: 62578
Number of extensions: 471271
Number of successful extensions: 965
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 8
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)