BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017067
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AES|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AES|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 322 LIAGSQSGVAGAQRIGMPCVVMRSSLTSRAEFPSANAVMDGFGGADLTISKLRH 375
LI G+Q A+++G+PC V+ + + + +FP+ A GF GA++ H
Sbjct: 352 LILGTQXERNIAKKLGLPCAVISAPVHVQ-DFPARYAPQXGFEGANVLFDTWVH 404
>pdb|3AEK|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEK|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|B Chain B, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|D Chain D, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 322 LIAGSQSGVAGAQRIGMPCVVMRSSLTSRAEFPSANAVMDGFGGADLTISKLRH 375
LI G+Q A+++G+PC V+ + + + +FP+ A GF GA++ H
Sbjct: 352 LILGTQMERNIAKKLGLPCAVISAPVHVQ-DFPARYAPQMGFEGANVLFDTWVH 404
>pdb|3AET|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AET|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 322 LIAGSQSGVAGAQRIGMPCVVMRSSLTSRAEFPSANAVMDGFGGADLTISKLRH 375
LI G+Q A+++G+PC V+ + + + +FP+ A GF GA++ H
Sbjct: 352 LILGTQMERNIAKKLGLPCAVISAPVHVQ-DFPARYAPQMGFEGANVLFDTWVH 404
>pdb|3AEU|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEU|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 322 LIAGSQSGVAGAQRIGMPCVVMRSSLTSRAEFPSANAVMDGFGGADLTISKLRH 375
LI G+Q A+++G+PC V+ + + + +FP+ A GF GA++ H
Sbjct: 352 LILGTQMERNIAKKLGLPCAVISAPVHVQ-DFPARYAPQMGFEGANVLFDTWVH 404
>pdb|4FE3|A Chain A, Structure Of Murine Cytosolic 5'-Nucleotidase Iii
Complexed With Uridinine Monophosphate
Length = 297
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 171 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 230
K L E +A D L+ G E+F GIP+ + +A GD + V+ + G S
Sbjct: 128 KAKLKEIVADSDVMLKEGYENFFGKLQQHGIPVFIFSA--GIGD-VLEEVIRQAGVYH-S 183
Query: 231 KIKIVGN 237
+K+V N
Sbjct: 184 NVKVVSN 190
>pdb|2G07|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Phospho- Enzyme Intermediate Analog With Beryllium
Fluoride
pdb|2G07|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Phospho- Enzyme Intermediate Analog With Beryllium
Fluoride
Length = 297
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 171 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 230
K L E +A D L+ G E+F GIP+ + +A GD + V+ + G S
Sbjct: 128 KAKLKEIVADSDVXLKEGYENFFGKLQQHGIPVFIFSA--GIGD-VLEEVIRQAGVYH-S 183
Query: 231 KIKIVGN 237
+K+V N
Sbjct: 184 NVKVVSN 190
>pdb|2BDU|A Chain A, X-Ray Structure Of A Cytosolic 5'-Nucleotidase Iii From
Mus Musculus Mm.158936
pdb|2BDU|B Chain B, X-Ray Structure Of A Cytosolic 5'-Nucleotidase Iii From
Mus Musculus Mm.158936
pdb|2G06|A Chain A, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, With Bound Magnesium(ii)
pdb|2G06|B Chain B, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, With Bound Magnesium(ii)
pdb|2G08|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Product- Transition Complex Analog With Aluminum
Fluoride
pdb|2G08|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Product- Transition Complex Analog With Aluminum
Fluoride
pdb|2G09|A Chain A, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, Product Complex
pdb|2G09|B Chain B, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, Product Complex
pdb|2G0A|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type 1
With Lead(Ii) Bound In Active Site
pdb|2G0A|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type 1
With Lead(Ii) Bound In Active Site
pdb|2Q4T|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Cytosolic 5'-Nucleotidase Iii From Mus Musculus
Mm.158936
pdb|2Q4T|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Cytosolic 5'-Nucleotidase Iii From Mus Musculus
Mm.158936
Length = 297
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 171 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 230
K L E +A D L+ G E+F GIP+ + +A GD + V+ + G S
Sbjct: 128 KAKLKEIVADSDVXLKEGYENFFGKLQQHGIPVFIFSA--GIGD-VLEEVIRQAGVYH-S 183
Query: 231 KIKIVGN 237
+K+V N
Sbjct: 184 NVKVVSN 190
>pdb|2YNM|D Chain D, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 530
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 314 EKPVRNCF--LIAGSQSGVAGAQRIGMPCVVMRSSLTSRAEFPSANAVMDGFGGADLTIS 371
E+ ++ C L+ G+Q A+R+G+PC V+ + + + + P+ + G+ GA++
Sbjct: 358 EESIKECAPELVLGTQMERHSAKRLGIPCAVISTPMHVQ-DVPARYSPQMGWEGANVIFD 416
Query: 372 KLRH 375
H
Sbjct: 417 DWVH 420
>pdb|2JGA|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii
In Complex With Phosphate And Magnesium
Length = 292
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 171 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTA 208
K L E +A D L+ G E+F D IP+ + +A
Sbjct: 123 KAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFIFSA 160
>pdb|2CN1|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii (
Nt5c3)(Casp Target)
pdb|2VKQ|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii (
Cn-Iii, Nt5c3) In Complex With Beryllium Trifluoride
Length = 292
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 171 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTA 208
K L E +A D L+ G E+F D IP+ + +A
Sbjct: 123 KAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFIFSA 160
>pdb|3LQW|A Chain A, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Entamoeba Histolytica
Length = 163
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 193 VDDAYNEGIPLIVLTAY-----GKSGDRIARSVVEKLGSERISKIK 233
+D+ Y I +I+ G+ GDRIA+ ++E++ RIS++K
Sbjct: 101 IDEDYRGEIKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISEVK 146
>pdb|3QKY|A Chain A, Crystal Structure Of Rhodothermus Marinus Bamd
Length = 261
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 255 SSGVDEQLATEARKAVSA----QKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGA 310
+ + E A ARK A +++E+ E A + D +P + D +V A+RA
Sbjct: 137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196
Query: 311 EYAEKPVR 318
YAE+ VR
Sbjct: 197 AYAEQSVR 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,774,370
Number of Sequences: 62578
Number of extensions: 383659
Number of successful extensions: 1239
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 33
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)