BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017067
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40119|CBBYC_CUPNH Protein CbbY, chromosomal OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=cbbYC PE=3 SV=3
Length = 254
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFF 145
A++ +VDG L D + QAFN AF ++GLD W AP+YT LL K AG ++R++ +
Sbjct: 3 ALIFDVDGTLADT-ESAHLQAFNAAFAEVGLDW-YWDAPLYTRLL-KVAGGKERLM--HY 57
Query: 146 NRIGWPTSVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIV 205
R+ P + K + V K E + + PLRPG+ +D+A G+PL +
Sbjct: 58 WRMVDPEEARGCKVKETIDAVHAIKTRHYAERVGAGGLPLRPGIARLIDEAGEAGLPLAI 117
Query: 206 LT 207
T
Sbjct: 118 AT 119
>sp|Q04541|CBBYP_CUPNH Protein CbbY, plasmid OS=Cupriavidus necator (strain ATCC 17699 /
H16 / DSM 428 / Stanier 337) GN=cbbYP PE=3 SV=1
Length = 254
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFF 145
A++ +VDG L D + QAFN AF ++GLD +W AP+YT LL K AG ++R++ +
Sbjct: 3 ALIFDVDGTLADT-ETAHLQAFNAAFAEVGLDW-HWDAPLYTRLL-KVAGGKERLM--HY 57
Query: 146 NRIGWPTSVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIV 205
R+ P + K + V K E + + PLRPG+ + +A G+PL +
Sbjct: 58 WRMVDPEEARGCKVKETIDAVHAIKTRHYAERVGAGGLPLRPGIARLIAEAGEAGLPLAI 117
Query: 206 LT 207
T
Sbjct: 118 AT 119
>sp|P95649|CBBY_RHOSH Protein CbbY OS=Rhodobacter sphaeroides GN=cbbY PE=3 SV=1
Length = 230
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFF 145
A+L +VDG L + +R+AFN F LG+D W Y +LL + G E R+
Sbjct: 4 AILFDVDGTLAETEEL-HRRAFNETFAALGVDW-FWDREEYRELLTTTGGKE-RIARFLR 60
Query: 146 NRIGWPTSVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIV 205
++ G P +P + ++ + K +A + LRPG+ D + +A GI L V
Sbjct: 61 HQKGDPAPLP-------IADIHRAKTERFVALMAEGEIALRPGIADLIAEAKRAGIRLAV 113
Query: 206 LT 207
T
Sbjct: 114 AT 115
>sp|O33513|CBBY_RHOCA Protein CbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1
Length = 227
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFF 145
A++ +VDG L + +RQAFN F GLD W+ Y LLR + G E RM
Sbjct: 5 ALIFDVDGTLAETEEV-HRQAFNETFAAQGLDW-YWSKEDYRTLLRTTGGKE-RMAKHRE 61
Query: 146 NRIGWPTSVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIV 205
N +G S P++ K + ++ + K E +AS L PGV + +D A G+ L +
Sbjct: 62 N-LG---SGPSDAK---IADLHKAKTQRYVEIIASGQVGLLPGVAELIDRAKASGLRLAI 114
Query: 206 LT 207
T
Sbjct: 115 AT 116
>sp|B3PQ08|MOAA_RHIE6 Cyclic pyranopterin monophosphate synthase OS=Rhizobium etli
(strain CIAT 652) GN=moaA PE=3 SV=1
Length = 348
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 214 DRIARSVVEKLGSERISKIKIVGNEEVERS--LYGQFVLGKGISSGVDEQLATEARKAVS 271
DR+ + + K + KI++ G E + R +Y LGK I +G+DE T +S
Sbjct: 67 DRLCSAFIAK----GVRKIRLTGGEPLVRKNIMYLVRQLGKKIGAGLDELTLTTNGSQLS 122
Query: 272 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIV 303
+E+ E + +++V +DT PE KI
Sbjct: 123 RHAEELYE--CGVRRINVSLDTLDPEKFRKIT 152
>sp|Q9WXB5|BCHB_ACIRU Light-independent protochlorophyllide reductase subunit B
OS=Acidiphilium rubrum GN=bchB PE=3 SV=1
Length = 504
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 322 LIAGSQSGVAGAQRIGMPCVVMRSSLTSRAEFPSANAVMDGFGGADLTISKLRH 375
L+ G+Q A+R+G+PC V+ S+ T +FP+ ++ GF GA++ L H
Sbjct: 357 LVLGTQMERHIAKRLGIPCAVI-SAPTHVQDFPARHSPFAGFEGANVLFDTLTH 409
>sp|Q9R007|CLC5A_MOUSE C-type lectin domain family 5 member A OS=Mus musculus GN=Clec5a
PE=1 SV=2
Length = 190
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 31/111 (27%)
Query: 36 RNHNCLSPFPSFSSTFPRNYNFH-GKCLHVNPFSAFSSSSGHDSQ-------------NP 81
RN P S+ + PRN++FH GKC F +FS S DS N
Sbjct: 58 RNDESTMPTRSYGTVCPRNWDFHQGKCF----FFSFSESPWKDSMDYCATQGSTLAIVNT 113
Query: 82 PRDLAVLLEVDGV------LV-----DAYRFGNRQAF--NVAFQKLGLDCA 119
P L L ++ G+ LV +R+ N F NV Q DC
Sbjct: 114 PEKLKYLQDIAGIENYFIGLVRQPGEKKWRWINNSVFNGNVTNQDQNFDCV 164
>sp|Q2K7L4|MOAA_RHIEC Cyclic pyranopterin monophosphate synthase OS=Rhizobium etli
(strain CFN 42 / ATCC 51251) GN=moaA PE=3 SV=1
Length = 348
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 214 DRIARSVVEKLGSERISKIKIVGNEEVERS--LYGQFVLGKGISSGVDEQLATEARKAVS 271
DR+ + + K +SKI++ G E + R +Y LG I SG+DE T +S
Sbjct: 67 DRLCSAFIAK----GVSKIRLTGGEPLVRKNIMYLVRKLGAKIGSGLDELTLTTNGSQLS 122
Query: 272 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIV 303
E+ + + +++V +DT P+ KI
Sbjct: 123 RHAAELHD--CGVRRINVSLDTLDPDKFRKIT 152
>sp|Q47758|DDL_ENTFA D-alanine--D-alanine ligase OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=ddl PE=3 SV=2
Length = 348
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 217 ARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL--------GKGISSGVDEQLATEARK 268
AR++VE+ R ++ I+GNE+V +L G+ V K I++ ++ Q+ +
Sbjct: 210 ARAIVEQGIEAREIEVAILGNEDVRTTLPGEVVKDVAFYDYDAKYINNTIEMQIPAHVPE 269
Query: 269 AVSAQKQEIAEEVASML 285
V+ Q QE A++ ML
Sbjct: 270 EVAHQAQEYAKKAYIML 286
>sp|B5ZRM8|MOAA_RHILW Cyclic pyranopterin monophosphate synthase OS=Rhizobium
leguminosarum bv. trifolii (strain WSM2304) GN=moaA PE=3
SV=1
Length = 348
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 214 DRIARSVVEKLGSERISKIKIVGNEEVERS--LYGQFVLGKGISSGVDEQLATEARKAVS 271
DR+ + V K + KI++ G E + R +Y LG+ I +G+DE T +S
Sbjct: 67 DRLCSAFVAK----GVKKIRLTGGEPLVRKNIMYLVRRLGEKIGAGLDEVTLTTNGSQLS 122
Query: 272 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIV-----AALRAGAEYAEK 315
+E+ + + +++V +DT P+ KI A + G + A+K
Sbjct: 123 RHAEELYD--CGVRRINVSLDTLDPDKFRKITRWGDFAKVMEGIDAAQK 169
>sp|A4YNP2|BCHB_BRASO Light-independent protochlorophyllide reductase subunit B
OS=Bradyrhizobium sp. (strain ORS278) GN=bchB PE=3 SV=1
Length = 518
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 322 LIAGSQSGVAGAQRIGMPCVVMRSSLTSRAEFPSANAVMDGFGGADLTISKLRH 375
L+ G+Q A+R+G+PC V+ SS T +FP+ + GF GA++ H
Sbjct: 363 LVLGTQMERHIAKRLGIPCAVI-SSPTHVQDFPARYSPQMGFEGANVLFDTWVH 415
>sp|B1LSG1|BCHB_METRJ Light-independent protochlorophyllide reductase subunit B
OS=Methylobacterium radiotolerans (strain ATCC 27329 /
DSM 1819 / JCM 2831) GN=bchB PE=3 SV=1
Length = 532
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 322 LIAGSQSGVAGAQRIGMPCVVMRSSLTSRAEFPSANAVMDGFGGADLTISKLRH 375
L+ G+Q A+R+G+PC V+ + + + +FP+ A GF GA++ L H
Sbjct: 360 LVLGTQMERHVAKRLGIPCAVISAPVHVQ-DFPARYAPQMGFEGANVLFDTLVH 412
>sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana
GN=At1g66250 PE=1 SV=2
Length = 505
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 149 GWPTSVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPG--VEDFVDDAYNE 199
GWP+ TNE A + N N + L P RPG V ++ + YNE
Sbjct: 274 GWPSKGETNEPDATLDNANTYNSNLIRHVLNKTGTPKRPGIAVSTYIYELYNE 326
>sp|Q8G6V2|ILVC1_BIFLO Ketol-acid reductoisomerase 1 OS=Bifidobacterium longum (strain NCC
2705) GN=ilvC1 PE=3 SV=2
Length = 350
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVV--EKLGSERISKIKIVGNEEV 240
AP PG + A G+P++V GD A ++ + LG+ R IK EE
Sbjct: 130 APKGPGHIVRREYAAGRGVPVVVAVEQDPRGDGWALTLAYAKALGALRAGAIKTTFKEET 189
Query: 241 ERSLYG-QFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDI 291
E L+G Q VL G++ V ++ E Q + EV LK+ VD+
Sbjct: 190 ETDLFGEQNVLMGGVNKLV--EMGFEVLTDAGYQPEIAYFEVCHELKMLVDL 239
>sp|Q8RBK0|CARB_THETN Carbamoyl-phosphate synthase large chain OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=carB PE=3 SV=1
Length = 1072
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 153 SVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAY--G 210
S+ T E + K +QE + E + + VED + A N G PLI+ AY G
Sbjct: 122 SIKTAEDRELFKRKMQEIGEPVAESVTVTN------VEDALKFAKNYGYPLIIRPAYTLG 175
Query: 211 KSGDRIARSVVEKLGSERIS-KIKIVGNEEVERSLYG 246
+G IA + E + + K +VG VE+SLYG
Sbjct: 176 GTGGGIAHNDEELISIVDLGLKKSMVGEVLVEKSLYG 212
>sp|Q2ST71|SECA_MYCCT Protein translocase subunit SecA OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=secA PE=3 SV=1
Length = 944
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 144 FFNRIGWPTSVPTNEKKAFVK----NVLQE-------KKNALDEFLASKDAPLRPGVEDF 192
+++I T E++ F+K V+Q +K+ D SK+A L+ VED
Sbjct: 355 LYSKIAGMTGTAKTEEEEFIKIYNTRVIQTPTNKPVIRKDEPDLTFGSKNAALKKLVED- 413
Query: 193 VDDAYNEGIPLIVLTAYGKSGDRIAR 218
V + + +G P+++ T +S ++IAR
Sbjct: 414 VKETHQKGAPILIGTTSVESSEQIAR 439
>sp|A4SE63|PTH_PROVI Peptidyl-tRNA hydrolase OS=Prosthecochloris vibrioformis (strain
DSM 265) GN=pth PE=3 SV=1
Length = 190
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 218 RSVVEKLGSERISKIKI-VGNEEVERSLYGQFVLGK 252
+ ++E LGSE ++++I +G EE + Y FVLGK
Sbjct: 115 KHIIESLGSEEFARLRIGIGLEEKPQGGYSSFVLGK 150
>sp|B0KBW4|CARB_THEP3 Carbamoyl-phosphate synthase large chain OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=carB PE=3
SV=1
Length = 1072
Score = 31.6 bits (70), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 153 SVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAY--G 210
S+ T E + K +QE + E + + +ED + A N G PLI+ AY G
Sbjct: 122 SIKTAEDRELFKRKMQEIGEPVAESVTVTN------IEDALKFAKNYGYPLIIRPAYTLG 175
Query: 211 KSGDRIARSVVEKLGSERIS-KIKIVGNEEVERSLYG 246
+G IA + E + + K +VG VE+SLYG
Sbjct: 176 GTGGGIAHNDEELISIVDLGLKKSMVGEVLVEKSLYG 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,872,126
Number of Sequences: 539616
Number of extensions: 5645291
Number of successful extensions: 17239
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 17221
Number of HSP's gapped (non-prelim): 62
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)