BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017068
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 41 LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84
LPFP SFD+V L F L+E R+LRPGG LV+
Sbjct: 89 LPFPGESFDVVLLFTTL-EFVEDVERVLLEARRVLRPGGALVVG 131
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 23 FALERGIPAFVAMLGT-RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL 81
FA E+G+ GT LPFP SFDI+ C F+ + EV R+L+ G
Sbjct: 62 FAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKA-VREVARVLKQDGRF 120
Query: 82 VI 83
++
Sbjct: 121 LL 122
>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
Cytokine-Induced Apoptosis Inhibitor Anamorsin
Length = 182
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 47 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86
SFDI+ T ++A L E+ R+LRPGG L + P
Sbjct: 66 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP 105
>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Anamorsin
Length = 176
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 47 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86
SFDI+ T ++A L E+ R+LRPGG L + P
Sbjct: 63 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP 102
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 29 IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV 88
+ +FVAM G R L +F L+P T + ++ + ++ G+ + G
Sbjct: 22 LASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTF 81
Query: 89 QWPKQDKEW 97
+W K+ + W
Sbjct: 82 RWGKEPEPW 90
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 252 VVPARKSSTLSVIYDRGLIGVYHDWCEPFS 281
+VPA + +T +VI+ GL H W E F+
Sbjct: 15 IVPAARKATAAVIFLHGLGDTGHGWAEAFA 44
>pdb|3HCA|A Chain A, Crystal Structure Of E185q Hpnmt In Complex With
Octopamine And Adohcy
pdb|3HCA|B Chain B, Crystal Structure Of E185q Hpnmt In Complex With
Octopamine And Adohcy
Length = 289
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Query: 13 PRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVD 72
P D H+ Q L G PA P PA + C + + P A L +
Sbjct: 156 PIDVHQPQ---PLGAGSPA----------PLPADALVSAFCLQAVSPDLASFQRALDHIT 202
Query: 73 RLLRPGGYLVISG 85
LLRPGG+L++ G
Sbjct: 203 TLLRPGGHLLLIG 215
>pdb|1YZ3|A Chain A, Structure Of Human Pnmt Complexed With Cofactor Product
Adohcy And Inhibitor Sk&f 64139
pdb|1YZ3|B Chain B, Structure Of Human Pnmt Complexed With Cofactor Product
Adohcy And Inhibitor Sk&f 64139
pdb|2AN3|A Chain A, Structure Of Pnmt With S-Adenosyl-L-Homocysteine And The
Semi-Rigid Analogue Acceptor Substrate
Cis-(1r,2s)-2-Amino-1-Tetralol.
pdb|2AN3|B Chain B, Structure Of Pnmt With S-Adenosyl-L-Homocysteine And The
Semi-Rigid Analogue Acceptor Substrate
Cis-(1r,2s)-2-Amino-1-Tetralol.
pdb|2AN4|A Chain A, Structure Of Pnmt Complexed With S-Adenosyl-L-Homocysteine
And The Acceptor Substrate Octopamine
pdb|2AN4|B Chain B, Structure Of Pnmt Complexed With S-Adenosyl-L-Homocysteine
And The Acceptor Substrate Octopamine
pdb|2AN5|A Chain A, Structure Of Human Pnmt Complexed With S-Adenosyl-
Homocysteine And An Inhibitor, Trans-(1s,2s)-2-Amino-1-
Tetralol
pdb|2AN5|B Chain B, Structure Of Human Pnmt Complexed With S-Adenosyl-
Homocysteine And An Inhibitor, Trans-(1s,2s)-2-Amino-1-
Tetralol
pdb|2G8N|A Chain A, Structure Of Hpnmt With Inhibitor 3-Hydroxymethyl-7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2G8N|B Chain B, Structure Of Hpnmt With Inhibitor 3-Hydroxymethyl-7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2G70|A Chain A, Structure Of Human Pnmt In Complex With Inhibitor
3-hydroxymethyl-7- Nitro-thiq And Adomet (sam)
pdb|2G70|B Chain B, Structure Of Human Pnmt In Complex With Inhibitor
3-hydroxymethyl-7- Nitro-thiq And Adomet (sam)
pdb|2G71|A Chain A, Structure Of Hpnmt With Inhibitor
3-fluoromethyl-7-trifluoropropyl- Thiq And Adohcy
pdb|2G71|B Chain B, Structure Of Hpnmt With Inhibitor
3-fluoromethyl-7-trifluoropropyl- Thiq And Adohcy
pdb|2G72|A Chain A, Structure Of Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adomet
pdb|2G72|B Chain B, Structure Of Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adomet
pdb|2ONY|A Chain A, Structure Of Hpnmt With Inhibitor
7-(N-4-Chlorophenylaminosulfonyl)- Thiq And Adohcy
pdb|2ONY|B Chain B, Structure Of Hpnmt With Inhibitor
7-(N-4-Chlorophenylaminosulfonyl)- Thiq And Adohcy
pdb|3HCB|A Chain A, Crystal Structure Of Hpnmt In Complex With Noradrenochrome
And Adohcy
pdb|3HCB|B Chain B, Crystal Structure Of Hpnmt In Complex With Noradrenochrome
And Adohcy
pdb|3HCC|A Chain A, Crystal Structure Of Hpnmt In Complex With Anti-9-Amino-5-
(Trifluromethyl) Benzonorbornene And Adohcy
pdb|3HCC|B Chain B, Crystal Structure Of Hpnmt In Complex With Anti-9-Amino-5-
(Trifluromethyl) Benzonorbornene And Adohcy
pdb|3HCD|A Chain A, Crystal Structure Of Hpnmt In Complex With Noradrenaline
And Adohcy
pdb|3HCD|B Chain B, Crystal Structure Of Hpnmt In Complex With Noradrenaline
And Adohcy
pdb|3HCF|A Chain A, Crystal Structure Of Hpnmt In Complex With
3-Trifluoromethyl Phenylethanolamine And Adohcy
pdb|3HCF|B Chain B, Crystal Structure Of Hpnmt In Complex With
3-Trifluoromethyl Phenylethanolamine And Adohcy
pdb|3KPJ|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And Bound
Phosphate
pdb|3KPJ|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And Bound
Phosphate
pdb|3KPU|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Quinolinol
pdb|3KPU|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Quinolinol
pdb|3KPV|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And Adenine
pdb|3KPV|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And Adenine
pdb|3KPW|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
1-Aminoisoquinoline
pdb|3KPW|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
1-Aminoisoquinoline
pdb|3KPY|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chlorooxindole
pdb|3KPY|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chlorooxindole
pdb|3KQM|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Bromo-1h-Imidazole
pdb|3KQM|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
4-Bromo-1h-Imidazole
pdb|3KQO|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chloropurine
pdb|3KQO|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Chloropurine
pdb|3KQP|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Aminoquinoline
pdb|3KQP|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
6-Aminoquinoline
pdb|3KQQ|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Hydroxynicotinic Acid
pdb|3KQQ|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Hydroxynicotinic Acid
pdb|3KQS|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Aminobenzimidazole
pdb|3KQS|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Aminobenzimidazole
pdb|3KQT|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1- Methylbenzimidazole
pdb|3KQT|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1- Methylbenzimidazole
pdb|3KQV|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
Formanilide
pdb|3KQV|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
Formanilide
pdb|3KQW|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chlorobenzimidazole
pdb|3KQW|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chlorobenzimidazole
pdb|3KQY|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-7-Ol
pdb|3KQY|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-7-Ol
pdb|3KR0|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-6-Ol
pdb|3KR0|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
2-Amino-1h- Benzo[d]imidazol-6-Ol
pdb|3KR1|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chloro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR1|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Chloro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR2|A Chain A, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Fluoro-1h- Benzo[d]imidazol-2-Amine
pdb|3KR2|B Chain B, Crystal Structure Of Hpnmt In Complex Adohcy And
5-Fluoro-1h- Benzo[d]imidazol-2-Amine
pdb|4DM3|A Chain A, Crystal Structure Of Human Pnmt In Complex Adohcy,
Resorcinol And Imidazole
pdb|4DM3|B Chain B, Crystal Structure Of Human Pnmt In Complex Adohcy,
Resorcinol And Imidazole
Length = 289
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 13 PRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVD 72
P D H+ Q L G PA P PA + C + P A L +
Sbjct: 156 PIDVHQPQ---PLGAGSPA----------PLPADALVSAFCLEAVSPDLASFQRALDHIT 202
Query: 73 RLLRPGGYLVISG 85
LLRPGG+L++ G
Sbjct: 203 TLLRPGGHLLLIG 215
>pdb|1PI3|A Chain A, E28q Mutant Benzoylformate Decarboxylase From Pseudomonas
Putida
Length = 528
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 281 STYPRTYDLIHVSGIESLIKNPGSNK 306
S + TY+L+ GI+++ NPGSN+
Sbjct: 3 SVHGTTYELLRRQGIDTVFGNPGSNQ 28
>pdb|2OBF|A Chain A, Structure Of K57a Hpnmt With Inhibitor
3-Hydroxymethyl-7-(N-4- Chlorophenylaminosulfonyl)-Thiq
And Adohcy (Sah)
pdb|2OBF|B Chain B, Structure Of K57a Hpnmt With Inhibitor
3-Hydroxymethyl-7-(N-4- Chlorophenylaminosulfonyl)-Thiq
And Adohcy (Sah)
pdb|2ONZ|A Chain A, Structure Of K57a Hpnmt With Inhibitor 7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2ONZ|B Chain B, Structure Of K57a Hpnmt With Inhibitor 7-(N-4-
Chlorophenylaminosulfonyl)-Thiq And Adohcy
pdb|2OPB|A Chain A, Structure Of K57a Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adohcy
pdb|2OPB|B Chain B, Structure Of K57a Hpnmt With Inhibitor 3-Fluoromethyl-7-
Thiomorpholinosulfonamide-Thiq And Adohcy
Length = 289
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 13 PRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVD 72
P D H+ Q L G PA P PA + C + P A L +
Sbjct: 156 PIDVHQPQ---PLGAGSPA----------PLPADALVSAFCLEAVSPDLASFQRALDHIT 202
Query: 73 RLLRPGGYLVISG 85
LLRPGG+L++ G
Sbjct: 203 TLLRPGGHLLLIG 215
>pdb|1HNN|A Chain A, Crystal Structure Of Human Pnmt Complexed With Sk&f 29661
And Adohcy(Sah)
pdb|1HNN|B Chain B, Crystal Structure Of Human Pnmt Complexed With Sk&f 29661
And Adohcy(Sah)
pdb|1N7I|A Chain A, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And The Inhibitor
Ly134046
pdb|1N7I|B Chain B, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And The Inhibitor
Ly134046
pdb|1N7J|A Chain A, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And An Iodinated
Inhibitor
pdb|1N7J|B Chain B, The Structure Of Phenylethanolamine N-Methyltransferase In
Complex With S-Adenosylhomocysteine And An Iodinated
Inhibitor
Length = 282
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 13 PRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVD 72
P D H+ Q L G PA P PA + C + P A L +
Sbjct: 156 PIDVHQPQ---PLGAGSPA----------PLPADALVSAFCLEAVSPDLASFQRALDHIT 202
Query: 73 RLLRPGGYLVISG 85
LLRPGG+L++ G
Sbjct: 203 TLLRPGGHLLLIG 215
>pdb|2V3W|A Chain A, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|B Chain B, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|C Chain C, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
pdb|2V3W|D Chain D, Crystal Structure Of The Benzoylformate Decarboxylase
Variant L461a From Pseudomonas Putida
Length = 528
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 281 STYPRTYDLIHVSGIESLIKNPGSNK 306
S + TY+L+ GI+++ NPGSN+
Sbjct: 3 SVHGTTYELLRRQGIDTVFGNPGSNE 28
>pdb|1YNO|A Chain A, High Resolution Structure Of Benzoylformate Decarboxylase
From Pseudomonas Putida Complexed With Thiamine
Thiazolone Diphosphate
Length = 527
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 281 STYPRTYDLIHVSGIESLIKNPGSNK 306
S + TY+L+ GI+++ NPGSN+
Sbjct: 2 SVHGTTYELLRRQGIDTVFGNPGSNE 27
>pdb|3FZN|A Chain A, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|B Chain B, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|C Chain C, Intermediate Analogue In Benzoylformate Decarboxylase
pdb|3FZN|D Chain D, Intermediate Analogue In Benzoylformate Decarboxylase
Length = 534
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 281 STYPRTYDLIHVSGIESLIKNPGSNK 306
S + TY+L+ GI+++ NPGSN+
Sbjct: 3 SVHGTTYELLRRQGIDTVFGNPGSNE 28
>pdb|3F6B|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor Paa
pdb|3F6E|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Pyridyl Inhibitor 3-Pkb
Length = 525
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 281 STYPRTYDLIHVSGIESLIKNPGSNK 306
S + TY+L+ GI+++ NPGSN+
Sbjct: 2 SVHGTTYELLRRQGIDTVFGNPGSNE 27
>pdb|1MCZ|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|B Chain B, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|C Chain C, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|D Chain D, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|E Chain E, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|F Chain F, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|G Chain G, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|H Chain H, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|I Chain I, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|J Chain J, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|K Chain K, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|L Chain L, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|M Chain M, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|N Chain N, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|O Chain O, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1MCZ|P Chain P, Benzoylformate Decarboxylase From Pseudomonas Putida
Complexed With An Inhibitor, R-Mandelate
pdb|1BFD|A Chain A, Benzoylformate Decarboxylase From Pseudomonas Putida
pdb|3FSJ|X Chain X, Crystal Structure Of Benzoylformate Decarboxylase In
Complex With The Inhibitor Mbp
Length = 528
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 281 STYPRTYDLIHVSGIESLIKNPGSNK 306
S + TY+L+ GI+++ NPGSN+
Sbjct: 3 SVHGTTYELLRRQGIDTVFGNPGSNE 28
>pdb|1PO7|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida
pdb|1Q6Z|A Chain A, High Resolution Structure Of E28a Mutant Benzoylformate
Decarboxylase From Pseudomonas Putida Complexed With
Thiamin Thiazolone Diphosphate
Length = 528
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 281 STYPRTYDLIHVSGIESLIKNPGSN 305
S + TY+L+ GI+++ NPGSN
Sbjct: 3 SVHGTTYELLRRQGIDTVFGNPGSN 27
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 146 DPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVM 191
DP+ WYFK G+Y +GT+ R APS A+++
Sbjct: 366 DPDIGWYFKAYLA-------SGDYGMGTLTSPIARGKDAPSNAVLL 404
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,945,302
Number of Sequences: 62578
Number of extensions: 508518
Number of successful extensions: 1020
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1003
Number of HSP's gapped (non-prelim): 19
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)