Query 017068
Match_columns 378
No_of_seqs 372 out of 1943
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:19:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 5E-124 1E-128 950.0 19.2 365 1-371 135-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 4E-44 8.7E-49 365.3 9.4 198 153-373 32-262 (506)
3 PLN02336 phosphoethanolamine N 99.5 3.7E-14 8E-19 146.2 8.9 77 5-86 61-143 (475)
4 COG2226 UbiE Methylase involve 99.4 9E-14 2E-18 132.7 6.1 72 13-85 80-156 (238)
5 PF08241 Methyltransf_11: Meth 99.3 1.4E-12 3E-17 102.9 4.0 69 14-83 25-95 (95)
6 PF01209 Ubie_methyltran: ubiE 99.3 3.1E-12 6.7E-17 121.6 6.0 71 14-85 78-153 (233)
7 PLN02232 ubiquinone biosynthes 99.2 1.9E-11 4.2E-16 109.2 7.1 72 14-86 3-82 (160)
8 KOG1540 Ubiquinone biosynthesi 99.2 6.6E-11 1.4E-15 113.5 7.9 76 4-85 131-214 (296)
9 PLN02233 ubiquinone biosynthes 99.1 2E-10 4.3E-15 110.5 7.5 76 5-86 100-183 (261)
10 PF08241 Methyltransf_11: Meth 98.9 1E-10 2.2E-15 92.2 -1.6 90 229-330 1-95 (95)
11 PLN02244 tocopherol O-methyltr 98.8 9.4E-09 2E-13 102.6 8.5 77 4-86 142-224 (340)
12 KOG4300 Predicted methyltransf 98.8 1E-08 2.2E-13 96.0 7.6 96 15-114 106-208 (252)
13 PRK10258 biotin biosynthesis p 98.8 1.3E-08 2.8E-13 96.3 6.9 76 5-86 66-141 (251)
14 PRK05785 hypothetical protein; 98.7 2.2E-08 4.8E-13 94.5 7.2 63 13-79 79-141 (226)
15 PRK14103 trans-aconitate 2-met 98.7 3.6E-08 7.8E-13 93.9 7.0 73 5-86 55-127 (255)
16 PTZ00098 phosphoethanolamine N 98.7 3.7E-08 8E-13 95.0 6.6 73 14-86 81-157 (263)
17 PLN02396 hexaprenyldihydroxybe 98.6 2.1E-08 4.6E-13 99.8 4.3 71 15-86 160-236 (322)
18 PRK11873 arsM arsenite S-adeno 98.6 1.2E-07 2.7E-12 90.8 7.3 75 6-86 105-184 (272)
19 PRK00107 gidB 16S rRNA methylt 98.5 2.8E-07 6E-12 85.1 8.7 150 203-372 27-187 (187)
20 PLN02336 phosphoethanolamine N 98.5 1.7E-07 3.6E-12 97.0 8.0 76 5-86 291-370 (475)
21 PRK11088 rrmA 23S rRNA methylt 98.5 1E-07 2.2E-12 91.9 6.0 67 12-86 116-182 (272)
22 smart00138 MeTrc Methyltransfe 98.5 1E-07 2.3E-12 92.1 5.7 77 10-86 134-243 (264)
23 PLN02490 MPBQ/MSBQ methyltrans 98.5 1.3E-07 2.9E-12 94.8 6.5 72 14-86 143-216 (340)
24 PRK10258 biotin biosynthesis p 98.5 6.8E-08 1.5E-12 91.5 4.0 101 219-332 37-140 (251)
25 PF13649 Methyltransf_25: Meth 98.5 5.4E-08 1.2E-12 79.6 2.8 68 12-79 28-101 (101)
26 PLN02233 ubiquinone biosynthes 98.5 7.2E-08 1.6E-12 92.8 3.0 97 226-332 75-182 (261)
27 COG2227 UbiG 2-polyprenyl-3-me 98.5 7.7E-08 1.7E-12 91.9 2.8 79 4-88 82-164 (243)
28 PRK08317 hypothetical protein; 98.5 4.1E-07 8.9E-12 83.5 7.4 71 15-86 51-125 (241)
29 TIGR02072 BioC biotin biosynth 98.5 4E-07 8.6E-12 83.8 7.2 73 13-86 63-136 (240)
30 PRK01683 trans-aconitate 2-met 98.5 4E-07 8.7E-12 86.4 7.3 75 5-86 57-131 (258)
31 TIGR02752 MenG_heptapren 2-hep 98.4 4.8E-07 1E-11 84.3 7.0 76 5-86 72-152 (231)
32 PF13489 Methyltransf_23: Meth 98.4 1.2E-08 2.6E-13 88.3 -3.8 96 223-334 21-117 (161)
33 PRK11036 putative S-adenosyl-L 98.4 3.5E-07 7.6E-12 87.2 4.8 71 15-86 73-150 (255)
34 PF13489 Methyltransf_23: Meth 98.3 2.7E-07 6E-12 79.8 2.8 52 35-87 66-117 (161)
35 PRK14103 trans-aconitate 2-met 98.3 2E-07 4.2E-12 88.8 2.0 99 219-331 24-125 (255)
36 PF13847 Methyltransf_31: Meth 98.3 1E-06 2.2E-11 77.3 5.7 70 15-86 35-111 (152)
37 PF01209 Ubie_methyltran: ubiE 98.3 1E-07 2.2E-12 90.8 -0.9 115 202-332 32-153 (233)
38 TIGR00740 methyltransferase, p 98.3 1.7E-06 3.8E-11 81.5 7.1 75 5-86 81-162 (239)
39 PRK12335 tellurite resistance 98.3 4.4E-07 9.4E-12 88.4 2.8 114 227-354 123-257 (287)
40 PRK15068 tRNA mo(5)U34 methylt 98.3 1.3E-06 2.7E-11 87.0 5.9 55 30-86 173-227 (322)
41 TIGR00477 tehB tellurite resis 98.2 2.2E-07 4.8E-12 85.5 0.3 93 226-330 32-131 (195)
42 PLN02244 tocopherol O-methyltr 98.2 7.5E-07 1.6E-11 89.0 4.0 95 225-332 119-223 (340)
43 PRK11207 tellurite resistance 98.2 2.6E-07 5.6E-12 85.2 0.5 93 226-330 32-132 (197)
44 PRK01683 trans-aconitate 2-met 98.2 1.1E-06 2.3E-11 83.5 4.0 118 220-351 27-153 (258)
45 PF02353 CMAS: Mycolic acid cy 98.2 2.6E-07 5.7E-12 90.0 -0.5 96 220-331 60-165 (273)
46 PLN02396 hexaprenyldihydroxybe 98.2 9.2E-07 2E-11 88.2 3.0 95 226-332 133-235 (322)
47 PRK06922 hypothetical protein; 98.2 3.2E-06 6.9E-11 91.0 7.2 77 5-86 444-538 (677)
48 smart00828 PKS_MT Methyltransf 98.2 2.6E-06 5.6E-11 79.0 5.7 70 15-86 30-105 (224)
49 PTZ00098 phosphoethanolamine N 98.2 7.3E-07 1.6E-11 86.0 1.8 96 226-333 54-157 (263)
50 smart00828 PKS_MT Methyltransf 98.2 4.8E-07 1E-11 83.9 0.4 93 226-332 1-104 (224)
51 PRK08317 hypothetical protein; 98.1 1.2E-06 2.5E-11 80.5 2.8 108 212-332 7-124 (241)
52 TIGR00452 methyltransferase, p 98.1 3E-06 6.6E-11 84.2 6.0 55 30-86 172-226 (314)
53 PRK15451 tRNA cmo(5)U34 methyl 98.1 3.1E-06 6.6E-11 80.7 5.7 71 14-86 88-165 (247)
54 PRK11036 putative S-adenosyl-L 98.1 4.5E-07 9.7E-12 86.5 -0.3 93 226-331 46-148 (255)
55 PRK11088 rrmA 23S rRNA methylt 98.1 1.3E-06 2.8E-11 84.2 2.9 101 225-342 86-192 (272)
56 PF08242 Methyltransf_12: Meth 98.1 2.1E-06 4.6E-11 69.5 3.5 71 5-81 22-99 (99)
57 PRK11207 tellurite resistance 98.1 4.5E-06 9.8E-11 77.0 6.1 73 5-83 54-132 (197)
58 TIGR03587 Pse_Me-ase pseudamin 98.1 5.5E-06 1.2E-10 77.3 6.5 70 13-85 72-142 (204)
59 KOG3010 Methyltransferase [Gen 98.1 2.7E-06 5.8E-11 81.5 4.4 91 13-110 60-158 (261)
60 TIGR00477 tehB tellurite resis 98.1 4.6E-06 1E-10 76.8 5.8 73 5-83 54-131 (195)
61 PF12847 Methyltransf_18: Meth 98.1 2.7E-07 5.9E-12 75.8 -2.3 97 226-332 3-111 (112)
62 TIGR01934 MenG_MenH_UbiE ubiqu 98.1 9.3E-06 2E-10 74.2 7.2 71 15-86 71-144 (223)
63 PRK15001 SAM-dependent 23S rib 98.1 4.2E-05 9.1E-10 78.0 12.5 129 226-371 230-373 (378)
64 PRK05785 hypothetical protein; 98.1 2.4E-06 5.1E-11 80.7 3.1 105 203-326 35-141 (226)
65 smart00138 MeTrc Methyltransfe 98.1 2E-06 4.2E-11 83.3 2.5 133 193-334 68-244 (264)
66 TIGR02072 BioC biotin biosynth 98.1 2.6E-06 5.5E-11 78.5 3.2 96 226-332 36-135 (240)
67 PRK08287 cobalt-precorrin-6Y C 98.1 4.3E-06 9.2E-11 76.0 4.5 109 225-350 32-150 (187)
68 PRK00121 trmB tRNA (guanine-N( 98.0 2E-06 4.2E-11 79.8 2.2 126 224-353 40-178 (202)
69 COG2226 UbiE Methylase involve 98.0 1E-06 2.2E-11 84.5 0.2 97 226-332 53-156 (238)
70 TIGR00537 hemK_rel_arch HemK-r 98.0 6.1E-06 1.3E-10 74.4 5.1 124 226-355 21-164 (179)
71 PF12847 Methyltransf_18: Meth 98.0 1.2E-05 2.5E-10 66.0 6.3 75 5-85 27-111 (112)
72 PF07021 MetW: Methionine bios 98.0 6.4E-06 1.4E-10 76.6 4.9 77 4-88 35-112 (193)
73 TIGR02752 MenG_heptapren 2-hep 98.0 3E-06 6.4E-11 78.9 2.7 94 226-332 47-151 (231)
74 TIGR00406 prmA ribosomal prote 98.0 4.7E-06 1E-10 81.4 4.2 114 226-354 161-281 (288)
75 PRK00216 ubiE ubiquinone/menaq 98.0 1.7E-05 3.6E-10 73.3 7.6 77 4-86 77-159 (239)
76 PRK06202 hypothetical protein; 98.0 1.1E-05 2.3E-10 75.8 6.4 73 11-85 91-166 (232)
77 TIGR00138 gidB 16S rRNA methyl 98.0 3.2E-06 7E-11 77.4 2.7 129 203-353 25-164 (181)
78 PRK15068 tRNA mo(5)U34 methylt 98.0 2.7E-06 5.8E-11 84.7 2.3 93 226-331 124-225 (322)
79 PRK11705 cyclopropane fatty ac 98.0 3E-06 6.5E-11 86.3 2.4 93 226-332 169-267 (383)
80 PRK14968 putative methyltransf 98.0 6.3E-06 1.4E-10 73.6 4.1 140 226-371 25-188 (188)
81 PRK00517 prmA ribosomal protei 97.9 7.4E-06 1.6E-10 78.3 4.2 115 226-355 121-237 (250)
82 PRK12335 tellurite resistance 97.9 1.5E-05 3.2E-10 77.7 6.3 74 5-84 144-222 (287)
83 TIGR00740 methyltransferase, p 97.9 5.2E-06 1.1E-10 78.3 3.0 95 226-333 55-162 (239)
84 COG4976 Predicted methyltransf 97.9 2.1E-06 4.6E-11 81.9 0.1 141 220-372 121-286 (287)
85 PF05401 NodS: Nodulation prot 97.9 1.7E-06 3.7E-11 80.7 -0.5 111 212-331 31-145 (201)
86 PF08242 Methyltransf_12: Meth 97.9 7.5E-07 1.6E-11 72.2 -3.0 90 229-328 1-99 (99)
87 TIGR00452 methyltransferase, p 97.9 8E-06 1.7E-10 81.3 3.7 94 226-331 123-224 (314)
88 PRK09328 N5-glutamine S-adenos 97.9 3.9E-05 8.4E-10 73.2 8.0 141 226-371 110-275 (275)
89 TIGR00438 rrmJ cell division p 97.9 5.2E-06 1.1E-10 75.6 1.5 133 226-370 34-186 (188)
90 PF05401 NodS: Nodulation prot 97.8 2.9E-05 6.3E-10 72.6 6.2 71 15-86 72-147 (201)
91 PRK15451 tRNA cmo(5)U34 methyl 97.8 4.3E-06 9.3E-11 79.7 -0.1 96 226-332 58-164 (247)
92 PRK11188 rrmJ 23S rRNA methylt 97.8 2.9E-06 6.3E-11 79.3 -1.3 135 226-371 53-206 (209)
93 PRK01544 bifunctional N5-gluta 97.8 0.00044 9.5E-09 73.0 14.2 124 223-351 346-483 (506)
94 PRK00121 trmB tRNA (guanine-N( 97.8 5E-05 1.1E-09 70.4 6.2 76 5-86 66-157 (202)
95 PTZ00146 fibrillarin; Provisio 97.7 3.9E-05 8.4E-10 75.7 5.0 99 220-331 130-236 (293)
96 TIGR01934 MenG_MenH_UbiE ubiqu 97.7 2.1E-05 4.5E-10 71.9 2.8 98 225-332 40-143 (223)
97 KOG3010 Methyltransferase [Gen 97.7 7.9E-06 1.7E-10 78.3 -0.0 115 222-351 31-159 (261)
98 TIGR01983 UbiG ubiquinone bios 97.7 2.4E-05 5.3E-10 72.2 3.0 124 197-332 18-149 (224)
99 PRK11705 cyclopropane fatty ac 97.7 7.3E-05 1.6E-09 76.2 6.7 70 14-86 196-268 (383)
100 PRK04266 fibrillarin; Provisio 97.7 5.7E-05 1.2E-09 71.8 5.5 138 220-372 70-226 (226)
101 PLN03075 nicotianamine synthas 97.7 6.9E-05 1.5E-09 74.1 6.1 72 13-85 154-233 (296)
102 PRK05134 bifunctional 3-demeth 97.7 7.9E-05 1.7E-09 69.6 5.9 72 14-86 76-152 (233)
103 PRK11873 arsM arsenite S-adeno 97.6 1.3E-05 2.7E-10 77.0 0.3 94 226-332 79-183 (272)
104 TIGR03534 RF_mod_PrmC protein- 97.6 3.1E-05 6.7E-10 72.5 2.9 123 226-353 89-238 (251)
105 COG4106 Tam Trans-aconitate me 97.6 0.00042 9.2E-09 65.9 10.1 172 11-218 57-232 (257)
106 PF05148 Methyltransf_8: Hypot 97.6 9.5E-05 2.1E-09 69.8 5.7 52 33-86 108-159 (219)
107 TIGR01983 UbiG ubiquinone bios 97.6 0.00011 2.4E-09 67.8 5.9 72 14-86 73-150 (224)
108 KOG3045 Predicted RNA methylas 97.6 0.00014 3E-09 70.7 6.3 52 33-86 214-265 (325)
109 PRK00107 gidB 16S rRNA methylt 97.6 0.00028 6.1E-09 65.2 8.0 90 5-112 71-165 (187)
110 PRK06202 hypothetical protein; 97.5 5E-05 1.1E-09 71.3 2.8 103 221-332 57-166 (232)
111 PF03848 TehB: Tellurite resis 97.5 1.3E-05 2.9E-10 74.6 -1.1 93 227-331 33-132 (192)
112 TIGR03840 TMPT_Se_Te thiopurin 97.5 0.00027 5.8E-09 66.5 7.6 75 4-83 57-150 (213)
113 PLN02490 MPBQ/MSBQ methyltrans 97.5 2.6E-05 5.7E-10 78.4 0.8 116 226-352 115-252 (340)
114 TIGR00091 tRNA (guanine-N(7)-) 97.5 0.00018 3.8E-09 66.2 6.2 77 4-86 41-133 (194)
115 TIGR03438 probable methyltrans 97.5 4E-05 8.6E-10 75.4 2.0 112 207-331 48-176 (301)
116 PRK05134 bifunctional 3-demeth 97.5 6.2E-05 1.4E-09 70.2 3.2 95 226-332 50-151 (233)
117 PRK00377 cbiT cobalt-precorrin 97.5 4.5E-05 9.7E-10 70.2 2.1 143 192-353 9-167 (198)
118 PRK06922 hypothetical protein; 97.5 3.6E-05 7.7E-10 83.1 1.5 105 226-333 420-538 (677)
119 PF13847 Methyltransf_31: Meth 97.5 1.8E-05 3.8E-10 69.4 -0.7 96 226-334 5-112 (152)
120 KOG1270 Methyltransferases [Co 97.5 8.1E-05 1.8E-09 72.3 3.5 73 10-86 113-196 (282)
121 TIGR02469 CbiT precorrin-6Y C5 97.5 7.2E-05 1.6E-09 61.9 2.8 92 226-331 21-121 (124)
122 COG4627 Uncharacterized protei 97.5 1.9E-05 4.1E-10 71.4 -0.9 52 37-88 37-89 (185)
123 PRK14966 unknown domain/N5-glu 97.5 0.00024 5.2E-09 73.4 7.0 142 227-372 254-419 (423)
124 TIGR02081 metW methionine bios 97.5 0.00016 3.4E-09 66.2 5.0 66 15-86 43-110 (194)
125 PRK00216 ubiE ubiquinone/menaq 97.5 7.7E-05 1.7E-09 68.8 3.0 94 226-332 53-158 (239)
126 TIGR00091 tRNA (guanine-N(7)-) 97.4 4.8E-05 1E-09 69.9 1.4 124 225-352 17-154 (194)
127 TIGR02081 metW methionine bios 97.4 4.2E-05 9E-10 70.0 0.6 91 227-331 16-108 (194)
128 PRK10611 chemotaxis methyltran 97.4 0.00018 3.9E-09 70.9 5.1 78 9-86 148-263 (287)
129 TIGR03587 Pse_Me-ase pseudamin 97.4 8.7E-05 1.9E-09 69.2 2.7 94 225-332 44-142 (204)
130 KOG2940 Predicted methyltransf 97.4 8.4E-05 1.8E-09 71.2 2.1 72 13-85 100-174 (325)
131 KOG1975 mRNA cap methyltransfe 97.4 0.00031 6.7E-09 70.1 5.9 74 14-87 146-239 (389)
132 PF01739 CheR: CheR methyltran 97.3 0.00031 6.7E-09 65.5 5.6 78 9-86 65-176 (196)
133 PF05148 Methyltransf_8: Hypot 97.3 0.00039 8.6E-09 65.7 6.3 139 196-357 32-186 (219)
134 PF03848 TehB: Tellurite resis 97.3 0.00035 7.5E-09 65.1 5.8 79 4-84 53-132 (192)
135 PRK01544 bifunctional N5-gluta 97.3 0.00013 2.8E-09 77.1 3.1 139 226-370 140-305 (506)
136 PF02353 CMAS: Mycolic acid cy 97.3 0.00067 1.5E-08 66.3 7.8 67 16-85 93-166 (273)
137 PRK14121 tRNA (guanine-N(7)-)- 97.3 0.00052 1.1E-08 70.3 7.2 82 3-86 146-236 (390)
138 TIGR02469 CbiT precorrin-6Y C5 97.3 0.0006 1.3E-08 56.3 6.3 68 14-85 49-122 (124)
139 TIGR02021 BchM-ChlM magnesium 97.3 0.00013 2.8E-09 67.8 2.6 95 224-332 55-158 (219)
140 TIGR00537 hemK_rel_arch HemK-r 97.3 0.00076 1.6E-08 60.8 7.4 70 15-86 48-141 (179)
141 TIGR02716 C20_methyl_CrtF C-20 97.3 7.6E-05 1.7E-09 73.0 0.8 101 220-332 145-254 (306)
142 TIGR00138 gidB 16S rRNA methyl 97.3 0.00094 2E-08 61.1 7.9 71 5-86 68-143 (181)
143 PRK11188 rrmJ 23S rRNA methylt 97.3 0.00052 1.1E-08 64.2 6.3 56 31-86 93-166 (209)
144 TIGR00536 hemK_fam HemK family 97.3 0.00037 7.9E-09 67.9 5.4 141 226-372 116-283 (284)
145 KOG1331 Predicted methyltransf 97.3 0.00014 3E-09 71.3 2.4 75 10-85 67-143 (293)
146 COG2813 RsmC 16S RNA G1207 met 97.3 0.0036 7.8E-08 62.1 12.2 127 227-372 161-300 (300)
147 COG2890 HemK Methylase of poly 97.3 0.00057 1.2E-08 66.9 6.6 160 198-371 92-276 (280)
148 PF07021 MetW: Methionine bios 97.2 7.9E-05 1.7E-09 69.4 0.4 120 216-352 7-163 (193)
149 TIGR03533 L3_gln_methyl protei 97.2 0.00034 7.4E-09 68.4 4.8 124 226-355 123-273 (284)
150 PRK13255 thiopurine S-methyltr 97.2 0.00091 2E-08 63.1 7.5 74 5-83 61-153 (218)
151 PRK14967 putative methyltransf 97.2 0.00015 3.3E-09 67.8 2.2 124 226-353 38-181 (223)
152 PF01728 FtsJ: FtsJ-like methy 97.2 0.00012 2.7E-09 66.0 1.4 146 220-371 19-180 (181)
153 KOG3045 Predicted RNA methylas 97.2 0.00064 1.4E-08 66.2 6.3 137 197-357 141-292 (325)
154 COG2230 Cfa Cyclopropane fatty 97.2 8.5E-05 1.8E-09 73.0 0.2 122 194-331 42-175 (283)
155 TIGR03704 PrmC_rel_meth putati 97.2 0.00017 3.6E-09 69.4 2.2 131 226-358 88-242 (251)
156 PRK09489 rsmC 16S ribosomal RN 97.2 8.9E-05 1.9E-09 74.6 0.4 131 227-372 199-337 (342)
157 PRK11805 N5-glutamine S-adenos 97.2 0.00035 7.5E-09 69.2 4.5 117 226-347 135-277 (307)
158 cd02440 AdoMet_MTases S-adenos 97.2 0.00012 2.7E-09 56.4 1.1 95 227-331 1-103 (107)
159 TIGR02716 C20_methyl_CrtF C-20 97.2 0.00091 2E-08 65.5 7.3 66 19-86 183-255 (306)
160 PRK13944 protein-L-isoaspartat 97.2 0.00087 1.9E-08 62.2 6.8 69 5-85 99-173 (205)
161 PF13649 Methyltransf_25: Meth 97.2 8.7E-06 1.9E-10 66.5 -5.9 91 228-326 1-101 (101)
162 TIGR00080 pimt protein-L-isoas 97.2 0.0003 6.5E-09 65.5 3.3 90 226-331 79-176 (215)
163 PF03291 Pox_MCEL: mRNA cappin 97.2 0.00067 1.4E-08 68.1 6.0 72 15-86 92-187 (331)
164 TIGR02021 BchM-ChlM magnesium 97.2 0.00046 1E-08 64.1 4.6 68 14-84 83-157 (219)
165 PF08003 Methyltransf_9: Prote 97.2 0.001 2.3E-08 66.0 7.2 76 8-85 141-219 (315)
166 PRK07580 Mg-protoporphyrin IX 97.1 0.00015 3.3E-09 67.1 1.2 98 225-332 64-166 (230)
167 PRK04266 fibrillarin; Provisio 97.1 0.0024 5.2E-08 60.7 9.3 72 5-86 98-177 (226)
168 PRK04457 spermidine synthase; 97.1 0.00081 1.8E-08 65.1 5.9 140 222-371 64-216 (262)
169 TIGR01177 conserved hypothetic 97.1 0.00084 1.8E-08 66.7 5.9 73 14-86 210-295 (329)
170 PTZ00146 fibrillarin; Provisio 97.1 0.0016 3.4E-08 64.5 7.6 77 5-86 159-238 (293)
171 cd02440 AdoMet_MTases S-adenos 97.0 0.0015 3.3E-08 50.2 5.8 70 15-84 28-103 (107)
172 TIGR00406 prmA ribosomal prote 97.0 0.0016 3.4E-08 63.7 7.2 71 5-86 184-260 (288)
173 TIGR03438 probable methyltrans 97.0 0.0011 2.3E-08 65.3 6.0 76 11-86 91-178 (301)
174 PF05175 MTS: Methyltransferas 97.0 0.00016 3.4E-09 65.1 0.0 113 225-345 32-155 (170)
175 KOG1269 SAM-dependent methyltr 97.0 0.00065 1.4E-08 69.1 4.2 52 32-84 163-214 (364)
176 COG4976 Predicted methyltransf 97.0 0.00024 5.2E-09 68.1 0.9 75 11-86 150-226 (287)
177 PF06325 PrmA: Ribosomal prote 97.0 0.00047 1E-08 68.2 3.0 132 220-372 159-295 (295)
178 PRK09489 rsmC 16S ribosomal RN 97.0 0.0042 9.2E-08 62.6 9.8 99 14-122 226-333 (342)
179 COG2227 UbiG 2-polyprenyl-3-me 97.0 0.00029 6.3E-09 67.7 1.3 94 227-332 62-161 (243)
180 PRK14121 tRNA (guanine-N(7)-)- 97.0 0.00052 1.1E-08 70.3 3.2 120 226-351 124-256 (390)
181 PF00891 Methyltransf_2: O-met 96.9 0.00017 3.7E-09 67.9 -0.6 118 202-332 73-199 (241)
182 PRK13944 protein-L-isoaspartat 96.9 0.00067 1.4E-08 62.9 3.1 88 226-332 74-173 (205)
183 COG2264 PrmA Ribosomal protein 96.9 0.001 2.2E-08 66.0 4.4 129 224-371 162-298 (300)
184 PRK14967 putative methyltransf 96.9 0.0044 9.6E-08 58.0 8.5 76 5-86 61-160 (223)
185 PRK07580 Mg-protoporphyrin IX 96.9 0.002 4.3E-08 59.7 5.9 66 14-82 91-163 (230)
186 PRK13255 thiopurine S-methyltr 96.8 0.00066 1.4E-08 64.1 2.1 95 226-330 39-153 (218)
187 KOG4300 Predicted methyltransf 96.8 0.0022 4.7E-08 60.8 5.5 133 202-346 50-201 (252)
188 PRK13942 protein-L-isoaspartat 96.8 0.00042 9.1E-09 64.8 0.5 87 226-331 78-175 (212)
189 PRK07402 precorrin-6B methylas 96.7 0.0013 2.8E-08 60.3 3.3 106 226-347 42-158 (196)
190 COG0500 SmtA SAM-dependent met 96.7 0.0078 1.7E-07 47.2 7.2 71 14-86 78-156 (257)
191 PF13659 Methyltransf_26: Meth 96.6 0.0028 6.1E-08 52.3 4.5 78 4-86 24-116 (117)
192 PLN02585 magnesium protoporphy 96.6 0.0047 1E-07 61.6 6.5 67 15-86 173-250 (315)
193 TIGR03840 TMPT_Se_Te thiopurin 96.6 0.00073 1.6E-08 63.6 0.6 95 226-330 36-150 (213)
194 PRK00312 pcm protein-L-isoaspa 96.5 0.0018 3.8E-08 60.0 3.0 87 226-331 80-174 (212)
195 COG4123 Predicted O-methyltran 96.5 0.0058 1.3E-07 59.2 6.5 128 221-353 41-191 (248)
196 TIGR01177 conserved hypothetic 96.5 0.00094 2E-08 66.4 1.0 118 226-349 184-309 (329)
197 PF05219 DREV: DREV methyltran 96.5 0.0011 2.4E-08 64.5 1.3 90 224-331 94-187 (265)
198 PRK13256 thiopurine S-methyltr 96.5 0.011 2.3E-07 56.6 8.0 76 4-84 66-162 (226)
199 PRK14968 putative methyltransf 96.5 0.021 4.6E-07 50.8 9.5 71 15-86 52-149 (188)
200 PRK13942 protein-L-isoaspartat 96.4 0.006 1.3E-07 57.0 6.1 69 5-85 103-176 (212)
201 PF13659 Methyltransf_26: Meth 96.4 0.00014 2.9E-09 60.2 -4.5 99 227-330 3-113 (117)
202 TIGR03534 RF_mod_PrmC protein- 96.4 0.02 4.3E-07 53.5 9.4 76 5-86 113-218 (251)
203 PRK14902 16S rRNA methyltransf 96.4 0.0066 1.4E-07 62.9 6.7 103 226-331 252-378 (444)
204 COG1041 Predicted DNA modifica 96.4 0.0053 1.2E-07 62.0 5.8 80 7-86 218-311 (347)
205 PRK00377 cbiT cobalt-precorrin 96.4 0.0069 1.5E-07 55.7 6.1 73 5-86 67-146 (198)
206 TIGR00563 rsmB ribosomal RNA s 96.4 0.0088 1.9E-07 61.6 7.3 82 5-91 264-374 (426)
207 PRK10901 16S rRNA methyltransf 96.3 0.015 3.3E-07 60.0 8.7 81 5-90 270-377 (427)
208 PF08003 Methyltransf_9: Prote 96.3 0.0026 5.6E-08 63.3 2.7 105 216-331 107-218 (315)
209 PRK08287 cobalt-precorrin-6Y C 96.3 0.012 2.7E-07 53.2 6.9 71 5-86 57-132 (187)
210 TIGR00438 rrmJ cell division p 96.2 0.015 3.3E-07 52.8 7.5 71 5-86 59-147 (188)
211 PRK14901 16S rRNA methyltransf 96.2 0.014 3.1E-07 60.3 8.0 75 15-89 284-388 (434)
212 PRK14904 16S rRNA methyltransf 96.1 0.0067 1.5E-07 62.9 5.0 79 5-89 277-381 (445)
213 KOG2352 Predicted spermine/spe 96.1 0.0062 1.3E-07 63.7 4.6 80 3-83 71-159 (482)
214 KOG1540 Ubiquinone biosynthesi 96.0 0.0052 1.1E-07 59.9 3.3 99 223-332 99-214 (296)
215 KOG1541 Predicted protein carb 96.0 0.014 3E-07 56.0 5.9 72 14-86 78-161 (270)
216 TIGR00080 pimt protein-L-isoas 95.9 0.02 4.3E-07 53.3 6.6 68 6-85 105-177 (215)
217 PF00891 Methyltransf_2: O-met 95.9 0.013 2.8E-07 55.2 5.3 64 19-86 134-200 (241)
218 PRK00517 prmA ribosomal protei 95.9 0.0061 1.3E-07 58.2 3.1 70 6-86 145-214 (250)
219 KOG2361 Predicted methyltransf 95.9 0.015 3.4E-07 56.1 5.7 72 15-86 104-184 (264)
220 TIGR00563 rsmB ribosomal RNA s 95.8 0.0054 1.2E-07 63.2 2.6 103 226-331 240-367 (426)
221 PF05219 DREV: DREV methyltran 95.8 0.016 3.4E-07 56.6 5.6 69 11-84 119-187 (265)
222 KOG1541 Predicted protein carb 95.8 0.038 8.2E-07 53.1 7.9 138 220-369 46-201 (270)
223 COG2230 Cfa Cyclopropane fatty 95.8 0.03 6.6E-07 55.2 7.4 75 4-86 96-177 (283)
224 COG0500 SmtA SAM-dependent met 95.7 0.0084 1.8E-07 47.1 2.8 93 228-333 52-156 (257)
225 PF05175 MTS: Methyltransferas 95.7 0.026 5.7E-07 50.7 6.3 70 15-86 62-141 (170)
226 PRK14903 16S rRNA methyltransf 95.7 0.029 6.2E-07 58.2 7.3 81 5-90 264-371 (431)
227 PRK15001 SAM-dependent 23S rib 95.6 0.028 6.1E-07 57.5 7.0 71 14-85 258-340 (378)
228 TIGR00417 speE spermidine synt 95.6 0.014 3.1E-07 56.4 4.6 107 220-332 68-186 (270)
229 PRK01581 speE spermidine synth 95.6 0.017 3.8E-07 58.9 5.1 157 212-374 136-316 (374)
230 TIGR00446 nop2p NOL1/NOP2/sun 95.6 0.013 2.9E-07 56.5 4.2 77 14-90 102-204 (264)
231 PRK00312 pcm protein-L-isoaspa 95.5 0.035 7.7E-07 51.3 6.7 69 6-86 103-176 (212)
232 PRK00811 spermidine synthase; 95.5 0.017 3.6E-07 56.6 4.7 113 212-331 62-190 (283)
233 PF02390 Methyltransf_4: Putat 95.5 0.0044 9.6E-08 57.5 0.5 123 225-352 18-156 (195)
234 PRK10901 16S rRNA methyltransf 95.4 0.0098 2.1E-07 61.4 2.6 106 226-332 246-372 (427)
235 TIGR00446 nop2p NOL1/NOP2/sun 95.3 0.0073 1.6E-07 58.3 1.3 102 226-331 73-198 (264)
236 COG1352 CheR Methylase of chem 95.3 0.024 5.3E-07 55.5 4.8 43 44-86 199-242 (268)
237 PF06080 DUF938: Protein of un 95.2 0.041 8.9E-07 51.9 6.1 42 44-86 99-142 (204)
238 PLN02781 Probable caffeoyl-CoA 95.2 0.011 2.3E-07 56.4 2.2 128 223-372 67-233 (234)
239 PRK09328 N5-glutamine S-adenos 95.2 0.05 1.1E-06 51.8 6.8 70 15-85 139-238 (275)
240 PRK14901 16S rRNA methyltransf 95.2 0.028 6E-07 58.2 5.3 140 226-370 254-429 (434)
241 PLN02585 magnesium protoporphy 95.2 0.0073 1.6E-07 60.3 1.0 72 226-300 146-226 (315)
242 PLN02232 ubiquinone biosynthes 95.2 0.0086 1.9E-07 53.4 1.3 47 277-332 35-81 (160)
243 PF05185 PRMT5: PRMT5 arginine 95.1 0.013 2.8E-07 61.3 2.4 128 193-331 151-296 (448)
244 COG0220 Predicted S-adenosylme 95.0 0.039 8.5E-07 52.7 5.4 81 4-86 73-165 (227)
245 TIGR00536 hemK_fam HemK family 95.0 0.056 1.2E-06 52.7 6.5 76 5-86 140-245 (284)
246 PRK01581 speE spermidine synth 94.9 0.057 1.2E-06 55.2 6.6 76 5-86 176-269 (374)
247 PRK00811 spermidine synthase; 94.9 0.069 1.5E-06 52.3 6.9 75 6-86 103-192 (283)
248 PRK11783 rlmL 23S rRNA m(2)G24 94.9 0.008 1.7E-07 66.0 0.3 127 226-354 540-678 (702)
249 PF05891 Methyltransf_PK: AdoM 94.8 0.0061 1.3E-07 57.9 -0.8 123 224-355 55-200 (218)
250 PRK14904 16S rRNA methyltransf 94.7 0.016 3.4E-07 60.2 1.9 102 226-332 252-377 (445)
251 PF02390 Methyltransf_4: Putat 94.7 0.047 1E-06 50.7 4.9 81 3-85 41-133 (195)
252 PF11968 DUF3321: Putative met 94.7 0.11 2.4E-06 49.5 7.4 78 37-114 91-179 (219)
253 TIGR00478 tly hemolysin TlyA f 94.6 0.016 3.5E-07 55.3 1.6 107 226-353 77-214 (228)
254 TIGR03533 L3_gln_methyl protei 94.6 0.11 2.4E-06 50.8 7.5 72 14-86 151-252 (284)
255 PRK07402 precorrin-6B methylas 94.6 0.094 2E-06 47.9 6.5 72 5-86 66-143 (196)
256 PHA03411 putative methyltransf 94.5 0.018 4E-07 56.7 1.8 101 226-331 66-182 (279)
257 PRK14902 16S rRNA methyltransf 94.5 0.04 8.6E-07 57.1 4.3 78 5-88 277-382 (444)
258 PRK11805 N5-glutamine S-adenos 94.5 0.096 2.1E-06 52.0 6.8 71 14-85 163-263 (307)
259 PF07942 N2227: N2227-like pro 94.4 0.089 1.9E-06 51.6 6.4 84 32-116 147-242 (270)
260 COG2521 Predicted archaeal met 94.4 0.11 2.3E-06 50.4 6.6 52 32-83 188-243 (287)
261 PLN03075 nicotianamine synthas 94.4 0.017 3.6E-07 57.4 1.2 135 224-373 123-276 (296)
262 PRK03612 spermidine synthase; 94.4 0.022 4.7E-07 60.5 2.1 125 223-352 296-440 (521)
263 PF10294 Methyltransf_16: Puta 94.3 0.013 2.8E-07 53.2 0.1 120 201-332 17-156 (173)
264 KOG1271 Methyltransferases [Ge 94.3 0.073 1.6E-06 49.9 5.0 117 227-346 70-195 (227)
265 PRK14903 16S rRNA methyltransf 94.2 0.019 4.2E-07 59.5 1.3 101 226-331 239-365 (431)
266 PHA03411 putative methyltransf 94.2 0.16 3.5E-06 50.1 7.5 79 5-89 90-189 (279)
267 COG2264 PrmA Ribosomal protein 94.1 0.082 1.8E-06 52.6 5.4 73 5-86 187-264 (300)
268 TIGR00479 rumA 23S rRNA (uraci 94.0 0.055 1.2E-06 55.7 4.2 111 226-352 294-416 (431)
269 PRK04457 spermidine synthase; 94.0 0.15 3.2E-06 49.4 6.8 75 5-85 92-177 (262)
270 KOG2904 Predicted methyltransf 93.9 0.18 3.8E-06 50.0 7.1 162 200-371 128-327 (328)
271 KOG1271 Methyltransferases [Ge 93.9 0.16 3.5E-06 47.7 6.4 76 11-86 94-182 (227)
272 PLN02366 spermidine synthase 93.9 0.099 2.1E-06 52.1 5.5 107 220-332 87-206 (308)
273 PRK13943 protein-L-isoaspartat 93.7 0.14 2.9E-06 51.5 6.2 68 6-85 108-180 (322)
274 PF05891 Methyltransf_PK: AdoM 93.7 0.1 2.2E-06 49.7 5.0 70 15-84 85-160 (218)
275 KOG1270 Methyltransferases [Co 93.6 0.035 7.6E-07 54.3 1.6 93 226-333 91-196 (282)
276 PHA03412 putative methyltransf 93.5 0.021 4.6E-07 55.1 0.1 98 226-330 51-160 (241)
277 PRK13699 putative methylase; P 93.4 0.11 2.4E-06 49.3 4.8 52 33-84 4-71 (227)
278 PRK13943 protein-L-isoaspartat 93.3 0.024 5.1E-07 56.9 -0.0 87 226-331 82-179 (322)
279 COG2519 GCD14 tRNA(1-methylade 93.3 0.23 5.1E-06 48.3 6.8 66 15-87 126-197 (256)
280 PF06325 PrmA: Ribosomal prote 93.2 0.17 3.6E-06 50.3 5.8 72 4-86 185-260 (295)
281 PRK14966 unknown domain/N5-glu 93.2 0.51 1.1E-05 49.2 9.5 91 14-111 281-400 (423)
282 COG4106 Tam Trans-aconitate me 93.1 0.1 2.2E-06 50.0 4.0 119 219-353 25-154 (257)
283 PRK03612 spermidine synthase; 93.1 0.14 3E-06 54.5 5.4 76 5-86 323-416 (521)
284 PRK13168 rumA 23S rRNA m(5)U19 93.0 0.35 7.5E-06 50.2 8.1 128 226-370 299-441 (443)
285 PF03269 DUF268: Caenorhabditi 92.9 0.067 1.5E-06 49.0 2.4 42 45-86 61-112 (177)
286 PRK15128 23S rRNA m(5)C1962 me 92.9 0.024 5.2E-07 58.3 -0.7 124 226-353 222-366 (396)
287 PF01234 NNMT_PNMT_TEMT: NNMT/ 92.9 0.2 4.4E-06 48.8 5.8 40 47-86 158-200 (256)
288 KOG2361 Predicted methyltransf 92.8 0.087 1.9E-06 51.1 3.1 96 227-332 74-183 (264)
289 PLN02476 O-methyltransferase 92.3 0.079 1.7E-06 52.2 2.1 133 222-372 116-278 (278)
290 TIGR00417 speE spermidine synt 92.3 0.26 5.7E-06 47.7 5.7 71 15-86 103-187 (270)
291 PF05724 TPMT: Thiopurine S-me 92.3 0.36 7.8E-06 45.7 6.5 73 5-82 61-152 (218)
292 PF06080 DUF938: Protein of un 92.3 0.16 3.5E-06 47.9 4.0 133 227-371 28-204 (204)
293 smart00650 rADc Ribosomal RNA 91.9 0.099 2.1E-06 46.7 2.0 93 225-332 14-113 (169)
294 PF01170 UPF0020: Putative RNA 91.8 0.23 4.9E-06 45.4 4.4 71 12-85 65-151 (179)
295 PLN02366 spermidine synthase 91.6 1 2.2E-05 45.0 9.1 70 15-85 122-206 (308)
296 PLN02781 Probable caffeoyl-CoA 91.3 0.54 1.2E-05 44.8 6.6 72 5-85 95-178 (234)
297 COG4122 Predicted O-methyltran 91.3 0.38 8.2E-06 45.9 5.4 71 5-84 86-165 (219)
298 KOG1975 mRNA cap methyltransfe 90.9 0.17 3.7E-06 51.0 2.8 54 285-343 195-250 (389)
299 KOG2899 Predicted methyltransf 90.8 0.6 1.3E-05 45.6 6.2 45 41-85 160-209 (288)
300 PF08704 GCD14: tRNA methyltra 90.5 0.5 1.1E-05 45.8 5.5 66 15-86 72-147 (247)
301 COG2242 CobL Precorrin-6B meth 90.3 0.59 1.3E-05 43.6 5.6 139 193-352 4-157 (187)
302 PF03291 Pox_MCEL: mRNA cappin 90.3 0.056 1.2E-06 54.4 -1.2 112 224-342 62-198 (331)
303 COG2813 RsmC 16S RNA G1207 met 90.2 1.9 4.2E-05 43.0 9.4 102 12-122 186-296 (300)
304 COG1189 Predicted rRNA methyla 90.1 0.45 9.7E-06 46.1 4.8 114 225-353 80-221 (245)
305 PLN02823 spermine synthase 89.4 0.58 1.3E-05 47.3 5.2 110 212-331 89-219 (336)
306 PF01596 Methyltransf_3: O-met 89.2 0.12 2.5E-06 48.6 0.1 132 223-372 44-205 (205)
307 PRK04148 hypothetical protein; 88.9 0.2 4.3E-06 44.4 1.3 88 226-354 18-108 (134)
308 smart00650 rADc Ribosomal RNA 88.7 0.92 2E-05 40.4 5.5 72 5-85 37-113 (169)
309 PF06859 Bin3: Bicoid-interact 88.5 0.2 4.3E-06 43.0 1.0 40 47-86 1-45 (110)
310 PRK11524 putative methyltransf 88.4 0.31 6.8E-06 47.5 2.5 55 32-86 10-81 (284)
311 PHA03412 putative methyltransf 88.3 1.6 3.4E-05 42.3 7.1 67 15-83 83-160 (241)
312 KOG3201 Uncharacterized conser 87.8 0.39 8.6E-06 44.3 2.5 44 42-86 98-141 (201)
313 COG0220 Predicted S-adenosylme 87.5 0.41 8.9E-06 45.8 2.6 119 226-346 50-180 (227)
314 PF02527 GidB: rRNA small subu 87.4 0.4 8.6E-06 44.4 2.4 135 199-353 25-172 (184)
315 PRK11933 yebU rRNA (cytosine-C 87.2 0.78 1.7E-05 48.4 4.7 77 15-91 145-248 (470)
316 PRK11783 rlmL 23S rRNA m(2)G24 86.3 0.67 1.4E-05 51.1 3.7 76 6-86 564-657 (702)
317 PRK03522 rumB 23S rRNA methylu 86.2 1.4 3.1E-05 43.5 5.7 128 226-371 175-314 (315)
318 COG4123 Predicted O-methyltran 86.1 2.6 5.6E-05 41.1 7.2 77 5-86 70-171 (248)
319 PLN02823 spermine synthase 86.0 4.5 9.8E-05 40.9 9.2 75 5-85 129-220 (336)
320 KOG3178 Hydroxyindole-O-methyl 85.4 1 2.3E-05 45.6 4.3 38 49-86 238-276 (342)
321 PF01135 PCMT: Protein-L-isoas 85.1 1.1 2.4E-05 42.2 4.2 69 6-86 100-173 (209)
322 TIGR02085 meth_trns_rumB 23S r 84.9 2.4 5.3E-05 43.1 6.8 109 226-353 235-353 (374)
323 TIGR03704 PrmC_rel_meth putati 84.8 2.6 5.7E-05 40.5 6.7 73 14-86 116-217 (251)
324 KOG1663 O-methyltransferase [S 84.6 1.8 3.9E-05 41.8 5.3 75 5-84 100-182 (237)
325 PF12147 Methyltransf_20: Puta 84.2 4.5 9.8E-05 40.5 8.0 77 11-87 164-251 (311)
326 PRK10909 rsmD 16S rRNA m(2)G96 84.0 0.36 7.8E-06 45.1 0.3 120 198-334 33-161 (199)
327 PLN02672 methionine S-methyltr 83.4 1 2.2E-05 52.1 3.6 124 226-351 120-298 (1082)
328 PRK00274 ksgA 16S ribosomal RN 83.2 0.59 1.3E-05 45.3 1.4 39 226-267 44-83 (272)
329 PRK15128 23S rRNA m(5)C1962 me 81.9 3.2 6.9E-05 42.9 6.3 75 5-86 245-340 (396)
330 PF01739 CheR: CheR methyltran 81.8 0.26 5.7E-06 46.0 -1.5 129 197-334 4-177 (196)
331 PRK00536 speE spermidine synth 81.0 4.5 9.8E-05 39.6 6.7 63 15-86 101-172 (262)
332 KOG2940 Predicted methyltransf 80.8 0.38 8.2E-06 46.7 -0.8 97 224-331 72-173 (325)
333 PF01135 PCMT: Protein-L-isoas 80.8 0.92 2E-05 42.8 1.7 100 212-331 64-171 (209)
334 COG4627 Uncharacterized protei 80.6 0.23 5.1E-06 45.4 -2.2 48 275-331 38-85 (185)
335 COG2518 Pcm Protein-L-isoaspar 79.5 6.5 0.00014 37.4 7.0 68 5-85 96-169 (209)
336 KOG3201 Uncharacterized conser 79.1 0.39 8.5E-06 44.3 -1.3 115 226-351 31-161 (201)
337 COG3963 Phospholipid N-methylt 78.7 2 4.2E-05 40.0 3.1 68 16-83 81-154 (194)
338 PRK10611 chemotaxis methyltran 78.6 0.63 1.4E-05 46.0 -0.1 44 284-334 221-264 (287)
339 KOG1499 Protein arginine N-met 78.5 0.88 1.9E-05 46.2 0.9 95 226-330 62-165 (346)
340 PRK00536 speE spermidine synth 78.0 4.2 9.2E-05 39.8 5.4 101 212-333 58-172 (262)
341 PRK14896 ksgA 16S ribosomal RN 77.7 1.3 2.7E-05 42.7 1.7 39 225-266 30-69 (258)
342 PLN02476 O-methyltransferase 77.2 4.7 0.0001 39.8 5.5 70 6-84 146-227 (278)
343 PRK11933 yebU rRNA (cytosine-C 76.9 0.99 2.1E-05 47.7 0.7 104 221-331 112-241 (470)
344 PF06962 rRNA_methylase: Putat 76.4 15 0.00032 32.9 7.9 89 15-107 6-113 (140)
345 PRK11760 putative 23S rRNA C24 75.7 1.4 3E-05 44.9 1.4 66 226-295 213-279 (357)
346 COG1092 Predicted SAM-dependen 75.2 2.3 5.1E-05 44.0 2.9 77 5-86 242-337 (393)
347 PF13679 Methyltransf_32: Meth 74.3 1.8 3.9E-05 37.7 1.6 38 207-244 4-45 (141)
348 COG0144 Sun tRNA and rRNA cyto 74.3 7.7 0.00017 39.4 6.3 84 7-91 186-294 (355)
349 TIGR00755 ksgA dimethyladenosi 73.7 2.3 5E-05 40.6 2.3 25 223-247 28-52 (253)
350 COG4798 Predicted methyltransf 73.7 3 6.4E-05 39.7 2.9 42 43-86 126-167 (238)
351 KOG1709 Guanidinoacetate methy 73.4 2.6 5.7E-05 40.7 2.5 68 17-85 133-206 (271)
352 COG0357 GidB Predicted S-adeno 73.3 12 0.00026 35.7 7.0 140 197-354 42-193 (215)
353 PLN02589 caffeoyl-CoA O-methyl 73.1 5.8 0.00013 38.4 4.9 70 5-83 106-188 (247)
354 PF01596 Methyltransf_3: O-met 72.9 4.7 0.0001 37.9 4.1 72 5-85 72-155 (205)
355 COG4122 Predicted O-methyltran 72.6 1.9 4.1E-05 41.2 1.4 144 208-372 46-218 (219)
356 PF01269 Fibrillarin: Fibrilla 70.7 12 0.00026 36.1 6.3 76 5-86 100-179 (229)
357 PF02527 GidB: rRNA small subu 70.6 6.8 0.00015 36.2 4.6 54 25-84 93-147 (184)
358 PRK13256 thiopurine S-methyltr 70.5 1.3 2.9E-05 42.3 -0.1 96 226-331 45-162 (226)
359 COG2263 Predicted RNA methylas 70.4 1.7 3.7E-05 40.8 0.6 23 226-248 47-72 (198)
360 PF01564 Spermine_synth: Sperm 70.2 5.3 0.00011 38.4 3.9 145 220-373 72-239 (246)
361 PRK13168 rumA 23S rRNA m(5)U19 69.4 10 0.00022 39.4 6.1 72 13-89 324-404 (443)
362 PF11899 DUF3419: Protein of u 68.9 14 0.0003 38.1 6.8 42 43-85 291-334 (380)
363 PF10294 Methyltransf_16: Puta 68.9 4.2 9.1E-05 36.8 2.8 42 44-86 116-157 (173)
364 PF07942 N2227: N2227-like pro 67.3 3.5 7.6E-05 40.6 2.0 45 310-354 180-240 (270)
365 KOG2798 Putative trehalase [Ca 66.6 9.6 0.00021 38.7 4.9 70 45-115 257-336 (369)
366 COG2519 GCD14 tRNA(1-methylade 65.7 5.1 0.00011 39.2 2.8 105 226-350 96-214 (256)
367 KOG3115 Methyltransferase-like 65.7 2.4 5.3E-05 40.5 0.6 21 313-333 164-184 (249)
368 COG1064 AdhP Zn-dependent alco 64.8 16 0.00034 37.3 6.2 71 4-87 191-261 (339)
369 PF03059 NAS: Nicotianamine sy 63.1 16 0.00036 36.0 5.8 71 14-85 152-230 (276)
370 KOG1661 Protein-L-isoaspartate 62.6 13 0.00027 35.9 4.7 48 31-85 146-193 (237)
371 PF14881 Tubulin_3: Tubulin do 60.9 8.5 0.00018 35.5 3.2 34 223-256 75-117 (180)
372 COG2242 CobL Precorrin-6B meth 60.1 44 0.00096 31.3 7.7 53 28-86 82-136 (187)
373 PRK13699 putative methylase; P 59.9 8.6 0.00019 36.5 3.2 61 312-372 52-121 (227)
374 COG1352 CheR Methylase of chem 59.8 2.6 5.7E-05 41.4 -0.4 46 283-335 199-244 (268)
375 PRK03522 rumB 23S rRNA methylu 59.2 19 0.00041 35.6 5.6 77 5-90 197-279 (315)
376 PF02475 Met_10: Met-10+ like- 58.8 4.5 9.8E-05 38.0 1.0 111 194-328 80-198 (200)
377 PF10354 DUF2431: Domain of un 58.7 39 0.00085 30.6 7.1 99 4-109 22-145 (166)
378 PF01564 Spermine_synth: Sperm 58.4 16 0.00035 35.0 4.8 76 5-86 102-192 (246)
379 KOG1269 SAM-dependent methyltr 58.1 8.6 0.00019 39.4 3.0 42 281-331 173-214 (364)
380 TIGR00479 rumA 23S rRNA (uraci 58.1 16 0.00035 37.6 5.0 74 5-87 316-398 (431)
381 PF01555 N6_N4_Mtase: DNA meth 57.5 6.2 0.00014 35.6 1.7 22 65-86 36-57 (231)
382 PF12147 Methyltransf_20: Puta 57.0 14 0.0003 37.1 4.1 125 222-353 133-276 (311)
383 KOG3987 Uncharacterized conser 56.3 6.7 0.00015 37.8 1.7 66 14-84 140-206 (288)
384 COG0421 SpeE Spermidine syntha 56.1 9.4 0.0002 37.8 2.8 127 218-351 70-214 (282)
385 PLN02672 methionine S-methyltr 56.0 28 0.00061 40.7 6.9 20 66-85 259-278 (1082)
386 TIGR02143 trmA_only tRNA (urac 54.6 9.3 0.0002 38.6 2.6 148 198-369 176-350 (353)
387 PLN02589 caffeoyl-CoA O-methyl 54.5 7 0.00015 37.9 1.6 134 221-372 76-246 (247)
388 COG2890 HemK Methylase of poly 54.4 34 0.00073 33.6 6.3 20 66-85 219-238 (280)
389 PLN02668 indole-3-acetate carb 54.2 19 0.00041 37.3 4.7 20 42-62 157-176 (386)
390 COG0421 SpeE Spermidine syntha 54.1 34 0.00073 33.9 6.3 74 5-85 102-190 (282)
391 TIGR03439 methyl_EasF probable 54.1 27 0.00059 35.1 5.7 77 9-85 105-197 (319)
392 PF09243 Rsm22: Mitochondrial 53.4 4.1 8.9E-05 39.8 -0.2 117 224-352 33-164 (274)
393 PTZ00338 dimethyladenosine tra 52.2 7.2 0.00016 38.6 1.3 36 226-264 38-74 (294)
394 COG2521 Predicted archaeal met 51.5 3.7 8E-05 40.1 -0.8 132 225-372 135-287 (287)
395 TIGR00478 tly hemolysin TlyA f 50.9 44 0.00095 32.0 6.3 66 5-85 100-171 (228)
396 KOG1331 Predicted methyltransf 48.0 7.8 0.00017 38.6 0.8 45 280-330 97-141 (293)
397 PF05724 TPMT: Thiopurine S-me 47.8 2.4 5.1E-05 40.2 -2.8 117 226-353 39-187 (218)
398 PRK04338 N(2),N(2)-dimethylgua 47.6 27 0.00058 36.0 4.6 72 5-86 83-159 (382)
399 PF01861 DUF43: Protein of unk 47.4 1.2E+02 0.0026 29.7 8.7 98 3-111 67-173 (243)
400 KOG3178 Hydroxyindole-O-methyl 47.2 12 0.00025 38.2 1.9 98 224-333 177-276 (342)
401 TIGR01444 fkbM_fam methyltrans 46.7 5.3 0.00012 33.9 -0.5 38 227-264 1-41 (143)
402 PRK11727 23S rRNA mA1618 methy 45.8 9.7 0.00021 38.4 1.1 34 222-257 112-146 (321)
403 PRK00050 16S rRNA m(4)C1402 me 45.6 13 0.00029 37.0 2.0 38 227-267 22-63 (296)
404 PF11968 DUF3321: Putative met 44.5 26 0.00056 33.7 3.6 112 227-354 54-179 (219)
405 PF06962 rRNA_methylase: Putat 44.5 32 0.00069 30.7 4.0 53 319-371 79-140 (140)
406 TIGR00095 RNA methyltransferas 43.8 7.3 0.00016 35.8 -0.1 31 226-258 51-81 (189)
407 PF01555 N6_N4_Mtase: DNA meth 42.0 4.8 0.0001 36.3 -1.6 21 311-331 35-55 (231)
408 COG0116 Predicted N6-adenine-s 42.0 70 0.0015 33.2 6.6 71 13-86 259-345 (381)
409 PF05958 tRNA_U5-meth_tr: tRNA 41.7 34 0.00073 34.6 4.2 50 198-252 175-224 (352)
410 TIGR03439 methyl_EasF probable 41.6 23 0.0005 35.6 3.0 124 194-331 50-196 (319)
411 cd06060 misato Human Misato sh 41.4 29 0.00064 37.0 3.9 60 196-255 119-192 (493)
412 PRK05031 tRNA (uracil-5-)-meth 41.3 20 0.00043 36.4 2.5 124 227-370 209-360 (362)
413 PF05185 PRMT5: PRMT5 arginine 41.1 69 0.0015 33.8 6.5 56 25-82 235-294 (448)
414 PF03269 DUF268: Caenorhabditi 40.5 11 0.00023 34.9 0.4 48 282-332 59-111 (177)
415 COG5459 Predicted rRNA methyla 37.0 27 0.0006 36.1 2.7 96 226-332 115-225 (484)
416 PF02475 Met_10: Met-10+ like- 36.2 68 0.0015 30.1 5.1 71 5-82 127-199 (200)
417 PF10672 Methyltrans_SAM: S-ad 34.9 23 0.0005 35.2 1.8 72 15-86 153-239 (286)
418 PF00398 RrnaAD: Ribosomal RNA 34.6 16 0.00035 35.1 0.6 32 224-258 30-61 (262)
419 PRK09880 L-idonate 5-dehydroge 34.4 88 0.0019 30.7 5.8 65 15-86 201-267 (343)
420 PF01269 Fibrillarin: Fibrilla 34.2 37 0.00081 32.8 3.0 93 227-331 76-177 (229)
421 PF14314 Methyltrans_Mon: Viru 34.0 39 0.00084 37.5 3.4 141 224-373 322-502 (675)
422 PRK10909 rsmD 16S rRNA m(2)G96 32.9 85 0.0018 29.3 5.2 75 5-86 78-160 (199)
423 COG0293 FtsJ 23S rRNA methylas 31.6 83 0.0018 29.9 4.8 21 66-86 140-160 (205)
424 PF13578 Methyltransf_24: Meth 31.5 20 0.00043 29.0 0.6 52 31-84 51-104 (106)
425 PF14258 DUF4350: Domain of un 30.9 2.1E+02 0.0045 21.5 6.2 62 18-84 8-69 (70)
426 TIGR02175 PorC_KorC 2-oxoacid: 29.8 1E+02 0.0022 27.8 5.0 52 26-86 42-98 (177)
427 PF00107 ADH_zinc_N: Zinc-bind 29.0 1.2E+02 0.0026 24.9 5.0 64 16-86 22-90 (130)
428 cd08254 hydroxyacyl_CoA_DH 6-h 28.6 1.3E+02 0.0028 28.7 5.8 36 44-86 229-264 (338)
429 COG0293 FtsJ 23S rRNA methylas 28.3 88 0.0019 29.7 4.4 139 225-371 46-200 (205)
430 PRK11524 putative methyltransf 28.1 29 0.00064 33.8 1.2 27 312-338 60-86 (284)
431 TIGR02085 meth_trns_rumB 23S r 28.1 1.5E+02 0.0032 30.3 6.3 74 5-87 257-336 (374)
432 PRK14896 ksgA 16S ribosomal RN 28.0 79 0.0017 30.3 4.2 45 5-56 53-100 (258)
433 KOG2539 Mitochondrial/chloropl 27.8 90 0.002 33.3 4.7 50 37-86 263-316 (491)
434 COG5459 Predicted rRNA methyla 27.5 1.1E+02 0.0023 32.0 5.1 60 39-103 176-238 (484)
435 CHL00125 psaE photosystem I su 27.5 28 0.00061 27.0 0.8 11 320-330 9-19 (64)
436 PRK00274 ksgA 16S ribosomal RN 27.2 83 0.0018 30.4 4.2 46 5-55 66-113 (272)
437 PRK02749 photosystem I reactio 26.9 29 0.00064 27.4 0.8 11 320-330 10-20 (71)
438 PF01728 FtsJ: FtsJ-like methy 26.7 37 0.0008 30.3 1.5 40 46-86 90-140 (181)
439 TIGR00308 TRM1 tRNA(guanine-26 26.6 74 0.0016 32.7 3.9 72 5-86 71-148 (374)
440 KOG1150 Predicted molecular ch 25.9 27 0.00059 33.3 0.5 31 317-347 39-77 (250)
441 PF14740 DUF4471: Domain of un 25.2 62 0.0013 32.3 2.9 56 282-352 218-285 (289)
442 PF01558 POR: Pyruvate ferredo 25.0 1.4E+02 0.0031 26.4 5.0 38 40-86 49-87 (173)
443 TIGR02987 met_A_Alw26 type II 24.7 18 0.0004 38.3 -1.0 76 225-300 32-126 (524)
444 KOG2904 Predicted methyltransf 24.0 2E+02 0.0044 29.0 6.2 73 14-86 178-286 (328)
445 PF02384 N6_Mtase: N-6 DNA Met 24.0 31 0.00067 33.6 0.5 108 220-330 42-181 (311)
446 COG1889 NOP1 Fibrillarin-like 23.6 2.1E+02 0.0045 27.6 5.9 75 6-86 103-181 (231)
447 cd08283 FDH_like_1 Glutathione 23.4 1.9E+02 0.0042 28.9 6.2 21 66-86 287-307 (386)
448 PF09243 Rsm22: Mitochondrial 23.2 3.8E+02 0.0083 26.0 8.0 70 13-86 63-140 (274)
449 cd08230 glucose_DH Glucose deh 22.9 2.1E+02 0.0046 28.0 6.3 67 11-86 202-270 (355)
450 PF01234 NNMT_PNMT_TEMT: NNMT/ 22.8 12 0.00026 36.6 -2.6 44 284-332 156-199 (256)
451 PF14740 DUF4471: Domain of un 22.0 92 0.002 31.1 3.4 62 45-112 220-285 (289)
452 PF10113 Fibrillarin_2: Fibril 21.8 1.1E+02 0.0023 32.5 3.9 75 11-85 202-287 (505)
453 PRK08537 2-oxoglutarate ferred 21.7 2.2E+02 0.0048 25.5 5.6 42 36-86 55-97 (177)
454 cd06316 PBP1_ABC_sugar_binding 21.1 6.2E+02 0.013 23.6 8.9 32 3-34 54-87 (294)
455 COG2265 TrmA SAM-dependent met 20.4 1.1E+02 0.0025 32.1 3.9 135 198-349 271-413 (432)
456 KOG1122 tRNA and rRNA cytosine 20.3 1.9E+02 0.0041 30.7 5.3 69 22-91 284-377 (460)
457 KOG1596 Fibrillarin and relate 20.3 3.4E+02 0.0074 27.0 6.8 75 6-86 184-262 (317)
458 PF04672 Methyltransf_19: S-ad 20.1 1.5E+02 0.0033 29.3 4.4 36 51-86 154-191 (267)
459 KOG1500 Protein arginine N-met 20.1 82 0.0018 32.6 2.6 34 224-262 177-213 (517)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=4.6e-124 Score=949.96 Aligned_cols=365 Identities=52% Similarity=1.012 Sum_probs=352.4
Q ss_pred CCCCCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068 1 MLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY 80 (378)
Q Consensus 1 l~~~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~ 80 (378)
|++|||+|||+||+|.|++|+|+|+|||+|+.+.++.+++||||+++||+|||++|+++|...++.+|.|++||||||||
T Consensus 135 l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGy 214 (506)
T PF03141_consen 135 LLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGY 214 (506)
T ss_pred HhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCce
Confidence 68999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred EEEEcCCCCCC-cc--chHHHHHHHHHHHhceeeeccccceEEEeCCCCcccccccCC-CCCCCCCCCCCCCcccccccc
Q 017068 81 LVISGPPVQWP-KQ--DKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNE-FGLELCDESDDPNYAWYFKLK 156 (378)
Q Consensus 81 lvis~pp~~~~-~~--~~~w~~l~~l~~~lcw~~~~~~~~~~iw~Kp~~~~c~~~~~~-~~~~~c~~~~~~~~~wy~~~~ 156 (378)
|++|+||++.+ .. .+.|++|++++++|||++++++++++|||||.+++||.+|+. +.||+|++++|||++||+||+
T Consensus 215 fv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~ 294 (506)
T PF03141_consen 215 FVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLE 294 (506)
T ss_pred EEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchh
Confidence 99999999943 22 245999999999999999999999999999999999999874 899999999999999999999
Q ss_pred cccccccCCCcccccCCCCCCCccccCCCCccee---cccCccccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCC
Q 017068 157 KCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALV---MKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNA 233 (378)
Q Consensus 157 ~Ci~~~p~~~~~~~~~~~~~WP~rl~~~p~~l~~---~g~~~~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~a 233 (378)
+||+|+|++.++.+++++++||+||+++|+||.. .|++.+.|.+|+++|+++|++|++.+...+++++|||||||||
T Consensus 295 ~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnA 374 (506)
T PF03141_consen 295 ACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNA 374 (506)
T ss_pred hhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecc
Confidence 9999999988899999999999999999999876 8899999999999999999999998877899999999999999
Q ss_pred cceeeeeeccCCCeeEEEeccCCCCcchHHHHhhccccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccc
Q 017068 234 FFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVD 313 (378)
Q Consensus 234 g~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~ 313 (378)
|+|||||||.++|||||||||.+++|||++||||||||+||||||+|||||||||||||+++||.|+ +||+|++
T Consensus 375 g~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~------~rC~~~~ 448 (506)
T PF03141_consen 375 GYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYK------DRCEMED 448 (506)
T ss_pred cccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhc------ccccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred eeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068 314 LMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK 371 (378)
Q Consensus 314 ~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K 371 (378)
||+||||||||||++||||+.+++++|++|+++|+|++.++|+|+|+.++||||+|||
T Consensus 449 illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 449 ILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=4e-44 Score=365.27 Aligned_cols=198 Identities=20% Similarity=0.314 Sum_probs=169.4
Q ss_pred cccccccccccCCCcccccCCCCCCCcccc-----CCCCc-cee-ccc--------CccccccchHHHHHHHHHHHHHhh
Q 017068 153 FKLKKCVSGTSSVKGEYAVGTIPKWPQRLT-----KAPSR-ALV-MKN--------GYDVFEADSRRWRRRVAYYKNTLN 217 (378)
Q Consensus 153 ~~~~~Ci~~~p~~~~~~~~~~~~~WP~rl~-----~~p~~-l~~-~g~--------~~~~F~~d~~~w~~~v~~Y~~~~~ 217 (378)
.+...|++|+|. +|+.|.+||++.+ ++|+. |++ ++. ..-.|+.++++|+++|.+|+++|.
T Consensus 32 ~~~~~CLVp~P~-----gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~ 106 (506)
T PF03141_consen 32 EERLRCLVPPPK-----GYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIA 106 (506)
T ss_pred CCCCccccCCCc-----cCCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHH
Confidence 456789999998 7999999999995 46666 654 432 234599999999999999999998
Q ss_pred hhc----CCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc---ccccccccccCCCCCCcccc
Q 017068 218 VKL----GTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL---IGVYHDWCEPFSTYPRTYDL 289 (378)
Q Consensus 218 ~~~----~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~~~w~~~f~typrtyDl 289 (378)
+++ ..|+||++||+|||+|||||+|++++|.||+++|.+.+ +|+||++|||+ +|++.+.+.||| .+||||
T Consensus 107 ~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp--~~~fDm 184 (506)
T PF03141_consen 107 EMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFP--SNAFDM 184 (506)
T ss_pred HHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCC--ccchhh
Confidence 776 45899999999999999999999999999999999998 99999999999 566666776554 399999
Q ss_pred ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC----------HHHHHHHHHHHhcCCceEEEecCCCC
Q 017068 290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----------PEVIDKVSRIANTVRWTAAVHDKEPG 359 (378)
Q Consensus 290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~----------~~~~~~~~~~~~~l~W~~~~~~~~~~ 359 (378)
+||++|+..|+ +.+ +.+|+|+|||||||||||++.+ .+++++|++++++|||+..+...
T Consensus 185 vHcsrc~i~W~----~~~----g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~--- 253 (506)
T PF03141_consen 185 VHCSRCLIPWH----PND----GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKG--- 253 (506)
T ss_pred hhcccccccch----hcc----cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeC---
Confidence 99999999997 122 5899999999999999999964 46899999999999999987532
Q ss_pred CCCCeEEEEEEecC
Q 017068 360 SNGREKILVATKSL 373 (378)
Q Consensus 360 ~~~~e~~l~~~K~~ 373 (378)
.+.|.||+.
T Consensus 254 -----~~aIwqKp~ 262 (506)
T PF03141_consen 254 -----DTAIWQKPT 262 (506)
T ss_pred -----CEEEEeccC
Confidence 388999974
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=3.7e-14 Score=146.16 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=59.8
Q ss_pred CeEEEecCCCCChHHHHHHHHHcC---CCeEEEEcccC--CCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCC
Q 017068 5 NILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTR--RLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPG 78 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~dae--~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPG 78 (378)
.|+++++ ++.+++.|+++. ..+.+..+|+. .+|+++++||+|+|..+++|+.+.. ..+++++.|+||||
T Consensus 61 ~v~giD~-----s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 61 QVIALDF-----IESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVG 135 (475)
T ss_pred EEEEEeC-----CHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence 4566655 457888776542 23566677764 6889999999999999999987753 58999999999999
Q ss_pred cEEEEEcC
Q 017068 79 GYLVISGP 86 (378)
Q Consensus 79 G~lvis~p 86 (378)
|++++...
T Consensus 136 G~l~~~d~ 143 (475)
T PLN02336 136 GYIFFRES 143 (475)
T ss_pred eEEEEEec
Confidence 99998644
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=9e-14 Score=132.66 Aligned_cols=72 Identities=31% Similarity=0.367 Sum_probs=64.1
Q ss_pred CCCChHHHHHHHHHcCCC-----eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068 13 PRDSHKAQIQFALERGIP-----AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 13 p~D~se~~vq~A~erg~~-----~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
..|+|+.|+..|++|... +.+.++|+++|||||+|||+|+|+++++++++.+ ++|+|+.|||||||++++..
T Consensus 80 ~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~-~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 80 GLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDID-KALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred EEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHH-HHHHHHHHhhcCCeEEEEEE
Confidence 345568999999998544 6789999999999999999999999999999888 99999999999999998753
No 5
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.31 E-value=1.4e-12 Score=102.89 Aligned_cols=69 Identities=32% Similarity=0.411 Sum_probs=56.9
Q ss_pred CCChHHHHHHHHHcCCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEE
Q 017068 14 RDSHKAQIQFALERGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 83 (378)
Q Consensus 14 ~D~se~~vq~A~erg~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvi 83 (378)
.|.++.+++.|+++... ..+..++.+.+||++++||+|+|..+++|+.+.. .+++|+.|+|||||++++
T Consensus 25 ~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~-~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 25 IDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPE-AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHH-HHHHHHHHHEEEEEEEEE
T ss_pred EeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHH-HHHHHHHHHcCcCeEEeC
Confidence 34457899999998543 4588899999999999999999999998884444 999999999999999986
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.29 E-value=3.1e-12 Score=121.59 Aligned_cols=71 Identities=34% Similarity=0.416 Sum_probs=55.0
Q ss_pred CCChHHHHHHHHHcC-----CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068 14 RDSHKAQIQFALERG-----IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 14 ~D~se~~vq~A~erg-----~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
.|+|+.|++.|+++. .++.+.++|+++|||+|++||+|+|+++++++++.. ++++|++|||||||+|++..
T Consensus 78 vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~-~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 78 VDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRE-RALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp EES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHH-HHHHHHHHHEEEEEEEEEEE
T ss_pred ecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHH-HHHHHHHHHcCCCeEEEEee
Confidence 345579999999862 257889999999999999999999999999998877 99999999999999999754
No 7
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.22 E-value=1.9e-11 Score=109.19 Aligned_cols=72 Identities=24% Similarity=0.169 Sum_probs=62.9
Q ss_pred CCChHHHHHHHHHcC--------CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068 14 RDSHKAQIQFALERG--------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 14 ~D~se~~vq~A~erg--------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
.|.|+.|++.|+++. ..+.+.++|++++||++++||+|+++++++|+.+.. .+++|++|+|||||+|++..
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~-~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL-RAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH-HHHHHHHHHcCcCeEEEEEE
Confidence 478899999997652 136788999999999999999999999998888776 99999999999999999865
Q ss_pred C
Q 017068 86 P 86 (378)
Q Consensus 86 p 86 (378)
.
T Consensus 82 ~ 82 (160)
T PLN02232 82 F 82 (160)
T ss_pred C
Confidence 4
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.16 E-value=6.6e-11 Score=113.50 Aligned_cols=76 Identities=22% Similarity=0.276 Sum_probs=63.8
Q ss_pred CCeEEEecCCCCChHHHHHHHHHcC----CC----eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcc
Q 017068 4 ENILTLSFAPRDSHKAQIQFALERG----IP----AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLL 75 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~erg----~~----~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL 75 (378)
..|+.+||.| .|+..+++|. +. +.+..+|+|.|||||++||+.+.++.+.+|++.+ ++|+|++|||
T Consensus 131 ~~V~v~Dinp-----~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~-k~l~EAYRVL 204 (296)
T KOG1540|consen 131 SKVTVLDINP-----HMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ-KALREAYRVL 204 (296)
T ss_pred ceEEEEeCCH-----HHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH-HHHHHHHHhc
Confidence 4566666665 7777766653 32 5678889999999999999999999999999999 9999999999
Q ss_pred cCCcEEEEEc
Q 017068 76 RPGGYLVISG 85 (378)
Q Consensus 76 kPGG~lvis~ 85 (378)
||||+|.+-.
T Consensus 205 KpGGrf~cLe 214 (296)
T KOG1540|consen 205 KPGGRFSCLE 214 (296)
T ss_pred CCCcEEEEEE
Confidence 9999998754
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.08 E-value=2e-10 Score=110.54 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=64.2
Q ss_pred CeEEEecCCCCChHHHHHHHHHcC--------CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhccc
Q 017068 5 NILTLSFAPRDSHKAQIQFALERG--------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR 76 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg--------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLk 76 (378)
.|++++++ ++|++.|+++. ..+.+..+|++.+||++++||+|+|+++++|++++. .+++|+.|+||
T Consensus 100 ~V~gvD~S-----~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~-~~l~ei~rvLk 173 (261)
T PLN02233 100 KVMGLDFS-----SEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRL-KAMQEMYRVLK 173 (261)
T ss_pred EEEEEECC-----HHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHH-HHHHHHHHHcC
Confidence 45665555 68999987652 246788899999999999999999999999988776 99999999999
Q ss_pred CCcEEEEEcC
Q 017068 77 PGGYLVISGP 86 (378)
Q Consensus 77 PGG~lvis~p 86 (378)
|||+|++...
T Consensus 174 pGG~l~i~d~ 183 (261)
T PLN02233 174 PGSRVSILDF 183 (261)
T ss_pred cCcEEEEEEC
Confidence 9999998754
No 10
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.91 E-value=1e-10 Score=92.20 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=66.0
Q ss_pred EecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcccc---ccccccccCCCCCCccccccccCccccccCCC
Q 017068 229 MDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIG---VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPG 303 (378)
Q Consensus 229 lDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig---~~~~w~~~f~typrtyDliH~~~~~~~~~~~~ 303 (378)
||+|||.|.++..|.++ +. +|+..|.+ .+++.+-++.--. ..+.=-+.+|..+++||+|++..+|..+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS---
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc---
Confidence 79999999999999988 66 67777766 7787777766532 22221233544459999999999988653
Q ss_pred CCCCCCCccceeeeecccccCCCeEEE
Q 017068 304 SNKNSCSLVDLMVEMDRMLRPEGTVVV 330 (378)
Q Consensus 304 ~~~~~c~~~~~l~EmDRiLRPgG~~ii 330 (378)
+...++-|+.|+|||||+++|
T Consensus 75 ------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 ------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ------CHHHHHHHHHHHcCcCeEEeC
Confidence 347899999999999999986
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=98.82 E-value=9.4e-09 Score=102.59 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=64.6
Q ss_pred CCeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068 4 ENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP 77 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP 77 (378)
..|++++++ +.|++.|+++ ++ .+.+.++|+..+||++++||+|+|..+++|+.+.. .+++|+.|+|||
T Consensus 142 ~~v~gvD~s-----~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~-~~l~e~~rvLkp 215 (340)
T PLN02244 142 ANVKGITLS-----PVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKR-KFVQELARVAAP 215 (340)
T ss_pred CEEEEEECC-----HHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHH-HHHHHHHHHcCC
Confidence 356666554 6788777664 43 46788999999999999999999999999998877 999999999999
Q ss_pred CcEEEEEcC
Q 017068 78 GGYLVISGP 86 (378)
Q Consensus 78 GG~lvis~p 86 (378)
||+|+++..
T Consensus 216 GG~lvi~~~ 224 (340)
T PLN02244 216 GGRIIIVTW 224 (340)
T ss_pred CcEEEEEEe
Confidence 999999764
No 12
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=1e-08 Score=96.05 Aligned_cols=96 Identities=22% Similarity=0.289 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHc-----CCCeE-EEEcccCCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCC
Q 017068 15 DSHKAQIQFALER-----GIPAF-VAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 87 (378)
Q Consensus 15 D~se~~vq~A~er-----g~~~~-~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp 87 (378)
|.++.|-++|.++ -..+. |+++++++|| ++|+|+|.|+|.+|+....++. +.|+|+.|+|||||.+++-.+-
T Consensus 106 Dpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~-k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 106 DPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPV-KQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred CCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHH-HHHHHHHHhcCCCcEEEEEecc
Confidence 3345555554432 33444 8899999999 9999999999999999877777 9999999999999999987651
Q ss_pred CCCCccchHHHHHHHHHHHhceeeecc
Q 017068 88 VQWPKQDKEWADLQAVARALCYELIAV 114 (378)
Q Consensus 88 ~~~~~~~~~w~~l~~l~~~lcw~~~~~ 114 (378)
.+++.-|+.+-+-...-.|+..+.
T Consensus 185 ---a~~y~~~n~i~q~v~ep~~~~~~d 208 (252)
T KOG4300|consen 185 ---AGEYGFWNRILQQVAEPLWHLESD 208 (252)
T ss_pred ---cccchHHHHHHHHHhchhhheecc
Confidence 233445776443322234554433
No 13
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.77 E-value=1.3e-08 Score=96.35 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=62.7
Q ss_pred CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068 5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis 84 (378)
.|++++ .|+.|++.|+++.....+..+|.+.+||++++||+|+|+.+++ |..+...++.|+.|+|||||.++++
T Consensus 66 ~v~~~D-----~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~-~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 66 QVTALD-----LSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQ-WCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred eEEEEE-----CCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhh-hcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 455555 4569999999986555677889999999999999999998765 5444449999999999999999998
Q ss_pred cC
Q 017068 85 GP 86 (378)
Q Consensus 85 ~p 86 (378)
.+
T Consensus 140 ~~ 141 (251)
T PRK10258 140 TL 141 (251)
T ss_pred eC
Confidence 76
No 14
>PRK05785 hypothetical protein; Provisional
Probab=98.73 E-value=2.2e-08 Score=94.52 Aligned_cols=63 Identities=22% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068 13 PRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 79 (378)
Q Consensus 13 p~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG 79 (378)
..|.|++|++.|+++. .+.+++++.+||++++||+|+|+++++|+.+.+ .+++|+.|||||.+
T Consensus 79 gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~-~~l~e~~RvLkp~~ 141 (226)
T PRK05785 79 ALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASDNIE-KVIAEFTRVSRKQV 141 (226)
T ss_pred EECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccCCHH-HHHHHHHHHhcCce
Confidence 3445679999998874 346789999999999999999999998887777 99999999999954
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.68 E-value=3.6e-08 Score=93.87 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=60.5
Q ss_pred CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068 5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis 84 (378)
.|++++++ +.|++.|+++++ .+..+|++.++ ++++||+|+|+.+++|++++. .+++++.|+|||||+|++.
T Consensus 55 ~v~gvD~s-----~~~~~~a~~~~~--~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~-~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 55 VIEALDSS-----PEMVAAARERGV--DARTGDVRDWK-PKPDTDVVVSNAALQWVPEHA-DLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEEEEECC-----HHHHHHHHhcCC--cEEEcChhhCC-CCCCceEEEEehhhhhCCCHH-HHHHHHHHhCCCCcEEEEE
Confidence 45666655 699999998864 56778888775 678999999999988877666 9999999999999999998
Q ss_pred cC
Q 017068 85 GP 86 (378)
Q Consensus 85 ~p 86 (378)
.+
T Consensus 126 ~~ 127 (255)
T PRK14103 126 VP 127 (255)
T ss_pred cC
Confidence 65
No 16
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.66 E-value=3.7e-08 Score=94.96 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=61.2
Q ss_pred CCChHHHHHHHHHcCC---CeEEEEcccCCCCCCCCceeEEEecCccccccC-ChHHHHHHHhhcccCCcEEEEEcC
Q 017068 14 RDSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 14 ~D~se~~vq~A~erg~---~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~-~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.|+|+.|++.|+++.. .+.+..+|+..+||++++||+|++..+++|+.. +...+++++.|+|||||+|+++..
T Consensus 81 iD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 81 VDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3455799999998742 366788898899999999999999999999873 335999999999999999999865
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.64 E-value=2.1e-08 Score=99.82 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHcC----C--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 15 DSHKAQIQFALERG----I--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 15 D~se~~vq~A~erg----~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
|.|+.+++.|+++. . .+.+..++++.+|+++++||+|+|..+++|+.++. .+++|+.|+|||||.++++..
T Consensus 160 D~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~-~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 160 DAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPA-EFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred eCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHH-HHHHHHHHHcCCCcEEEEEEC
Confidence 44568888887652 1 46678889999999999999999999999999887 999999999999999999876
No 18
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.57 E-value=1.2e-07 Score=90.82 Aligned_cols=75 Identities=19% Similarity=0.235 Sum_probs=61.3
Q ss_pred eEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068 6 ILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY 80 (378)
Q Consensus 6 v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~ 80 (378)
|+++++ ++.|++.|+++ +. .+.+..++.+.+|+++++||+|++..+++|+++.. .+++|+.|+|||||+
T Consensus 105 v~gvD~-----s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~-~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 105 VIGVDM-----TPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKE-RVFKEAFRVLKPGGR 178 (272)
T ss_pred EEEECC-----CHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHH-HHHHHHHHHcCCCcE
Confidence 555554 46888888875 33 45677889999999999999999988887766666 899999999999999
Q ss_pred EEEEcC
Q 017068 81 LVISGP 86 (378)
Q Consensus 81 lvis~p 86 (378)
|+++..
T Consensus 179 l~i~~~ 184 (272)
T PRK11873 179 FAISDV 184 (272)
T ss_pred EEEEEe
Confidence 999764
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.55 E-value=2.8e-07 Score=85.10 Aligned_cols=150 Identities=17% Similarity=0.275 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccC--CCeeEEEeccCCCC-cchHH----HHhhcc--cccc
Q 017068 203 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLSV----IYDRGL--IGVY 273 (378)
Q Consensus 203 ~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~-~~l~~----i~eRGl--ig~~ 273 (378)
..|++.+-.-.. +.+.+..+ ..|||+|||+|.++.++.. ... .|+..|.. .++.. +-+.|+ +-.+
T Consensus 27 ~~~~~~~~d~l~-l~~~l~~g--~~VLDiGcGtG~~al~la~~~~~~---~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 27 ELWERHILDSLA-IAPYLPGG--ERVLDVGSGAGFPGIPLAIARPEL---KVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHH-HHhhcCCC--CeEEEEcCCCCHHHHHHHHHCCCC---eEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 478877743222 22234433 4799999999998887653 233 55666665 55533 334454 3333
Q ss_pred ccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEE
Q 017068 274 HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV 353 (378)
Q Consensus 274 ~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~ 353 (378)
+.-.+.++. ..+||+|-|.. + .++..++-++-|+|||||.+++-........++++++.+-|.+..
T Consensus 101 ~~d~~~~~~-~~~fDlV~~~~-~------------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 101 HGRAEEFGQ-EEKFDVVTSRA-V------------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEE 166 (187)
T ss_pred eccHhhCCC-CCCccEEEEcc-c------------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEee
Confidence 333334544 57999999853 1 234678889999999999999998888888999999999999754
Q ss_pred --ecCCCCCCCCeEEEEEEec
Q 017068 354 --HDKEPGSNGREKILVATKS 372 (378)
Q Consensus 354 --~~~~~~~~~~e~~l~~~K~ 372 (378)
.-+-+|-.+...+.|.+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 167 VIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred eEEEecCCCCCcEEEEEEecC
Confidence 2222343445566677764
No 20
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.54 E-value=1.7e-07 Score=96.96 Aligned_cols=76 Identities=21% Similarity=0.394 Sum_probs=64.1
Q ss_pred CeEEEecCCCCChHHHHHHHHHcC----CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068 5 NILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY 80 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg----~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~ 80 (378)
.|++++++ +.+++.|+++. ..+.+..+|...+||++++||+|+|..+++|+.++. .+++|+.|+|||||.
T Consensus 291 ~v~gvDiS-----~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~-~~l~~~~r~LkpgG~ 364 (475)
T PLN02336 291 HVVGIDLS-----VNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKP-ALFRSFFKWLKPGGK 364 (475)
T ss_pred EEEEEECC-----HHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCHH-HHHHHHHHHcCCCeE
Confidence 45555554 68888887752 246788889999999999999999999999998877 999999999999999
Q ss_pred EEEEcC
Q 017068 81 LVISGP 86 (378)
Q Consensus 81 lvis~p 86 (378)
++++.+
T Consensus 365 l~i~~~ 370 (475)
T PLN02336 365 VLISDY 370 (475)
T ss_pred EEEEEe
Confidence 999865
No 21
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.54 E-value=1e-07 Score=91.87 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=56.8
Q ss_pred CCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 12 APRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 12 ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
...|+|+.+++.|.++...+.+.++|+..+||++++||+|++.++ + ..++|+.|+|||||+|++..|
T Consensus 116 ~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~-------~-~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 116 FGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA-------P-CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred EEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-------C-CCHHHHHhhccCCCEEEEEeC
Confidence 445667899999999877788889999999999999999998653 1 346899999999999999876
No 22
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.53 E-value=1e-07 Score=92.08 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=63.2
Q ss_pred ecCCCCChHHHHHHHHHcC--------C------------------------CeEEEEcccCCCCCCCCceeEEEecCcc
Q 017068 10 SFAPRDSHKAQIQFALERG--------I------------------------PAFVAMLGTRRLPFPAFSFDIVHCSRCL 57 (378)
Q Consensus 10 s~ap~D~se~~vq~A~erg--------~------------------------~~~~~v~dae~LPfpd~SFD~V~cs~~l 57 (378)
.|-..|+|+.|++.|++.- + .+.|.++|...+|+++++||+|+|..++
T Consensus 134 ~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl 213 (264)
T smart00138 134 KILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVL 213 (264)
T ss_pred EEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhH
Confidence 4555667789999998742 1 3567888988888889999999999999
Q ss_pred ccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068 58 IPFTAYN-ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 58 ~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p 86 (378)
+|+.++. .++++++.|+|+|||+|++...
T Consensus 214 ~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 214 IYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 9997543 4899999999999999999654
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.53 E-value=1.3e-07 Score=94.81 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=61.6
Q ss_pred CCChHHHHHHHHHcC--CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 14 RDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 14 ~D~se~~vq~A~erg--~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.|.|+.|++.|+++. ..+.+..+|++.+||++++||+|+++.+++||.+.. .+++|+.|+|||||++++..+
T Consensus 143 VD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~-~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 143 LDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-RGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred EECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHH-HHHHHHHHhcCCCcEEEEEEe
Confidence 455678999998863 235677889999999999999999999999998887 899999999999999988754
No 24
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.52 E-value=6.8e-08 Score=91.45 Aligned_cols=101 Identities=18% Similarity=0.159 Sum_probs=71.0
Q ss_pred hcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cc-ccccccccCCCCCCccccccccCc
Q 017068 219 KLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IG-VYHDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 219 ~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~w~~~f~typrtyDliH~~~~ 295 (378)
.+.......|||+|||+|.++..|..... .|.-.|.+ .++..+-+++- +. +..|. +.+|..+.+||+|.++..
T Consensus 37 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~ 112 (251)
T PRK10258 37 MLPQRKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLA 112 (251)
T ss_pred hcCccCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECch
Confidence 34444567899999999999988876654 55666765 78887777753 11 12233 334433479999998766
Q ss_pred cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
+... -+...+|-|+-|+|+|||.+++..
T Consensus 113 l~~~---------~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 113 VQWC---------GNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hhhc---------CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 6422 134689999999999999999984
No 25
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.51 E-value=5.4e-08 Score=79.61 Aligned_cols=68 Identities=31% Similarity=0.432 Sum_probs=56.4
Q ss_pred CCCCChHHHHHHHHHcC----CCeEEEEcccCCCCCCCCceeEEEecCc-cccccCCh-HHHHHHHhhcccCCc
Q 017068 12 APRDSHKAQIQFALERG----IPAFVAMLGTRRLPFPAFSFDIVHCSRC-LIPFTAYN-ATYLIEVDRLLRPGG 79 (378)
Q Consensus 12 ap~D~se~~vq~A~erg----~~~~~~v~dae~LPfpd~SFD~V~cs~~-l~hw~~~~-~~~L~Ev~RVLkPGG 79 (378)
...|+|+.|++.|+++. .++.+.++|.+++|+.+++||+|+|+.+ ++|+.+.+ ..+++++.++|||||
T Consensus 28 ~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 28 IGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 34456689999999875 6889999999999999999999999665 88866544 689999999999998
No 26
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.48 E-value=7.2e-08 Score=92.83 Aligned_cols=97 Identities=21% Similarity=0.145 Sum_probs=67.7
Q ss_pred eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcc---------ccccccccccCCCCCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL---------IGVYHDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGl---------ig~~~~w~~~f~typrtyDliH~~~ 294 (378)
..|||+|||+|.++..|..+ +. --+|+-.|.+ .+|..+-+|.- +-....=.+.+|.-+.+||+|.++.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 57999999999998877653 11 0156777766 88888766531 1122222344543237999999987
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
.+..+. +...+|-||-|+|||||.+++.|
T Consensus 154 ~l~~~~---------d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 154 GLRNVV---------DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ccccCC---------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 777543 34678999999999999998875
No 27
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.47 E-value=7.7e-08 Score=91.90 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=64.7
Q ss_pred CCeEEEecCCCCChHHHHHHHH----HcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068 4 ENILTLSFAPRDSHKAQIQFAL----ERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 79 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~----erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG 79 (378)
.+|+++|++ |.+|+.|+ +.|+.+.+....++.|-...++||+|+|..+++|.+++. .+++++.+.+||||
T Consensus 82 a~VtgiD~s-----e~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~-~~~~~c~~lvkP~G 155 (243)
T COG2227 82 ASVTGIDAS-----EKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPE-SFLRACAKLVKPGG 155 (243)
T ss_pred CeeEEecCC-----hHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHH-HHHHHHHHHcCCCc
Confidence 345555555 56666655 456777777788888888789999999999999999998 89999999999999
Q ss_pred EEEEEcCCC
Q 017068 80 YLVISGPPV 88 (378)
Q Consensus 80 ~lvis~pp~ 88 (378)
.+++|++..
T Consensus 156 ~lf~STinr 164 (243)
T COG2227 156 ILFLSTINR 164 (243)
T ss_pred EEEEecccc
Confidence 999999853
No 28
>PRK08317 hypothetical protein; Provisional
Probab=98.46 E-value=4.1e-07 Score=83.47 Aligned_cols=71 Identities=35% Similarity=0.484 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 15 DSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 15 D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
|.++.+++.|+++ +..+.+..+|++.+|+++++||+|++..++.|+.+.. .+++++.++|||||++++..+
T Consensus 51 d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~-~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 51 DRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPA-RALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred eCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhccCCHH-HHHHHHHHHhcCCcEEEEEec
Confidence 4456888888776 3346677888889999999999999999999998877 999999999999999999865
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.45 E-value=4e-07 Score=83.84 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=61.5
Q ss_pred CCCChHHHHHHHHHcCC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 13 PRDSHKAQIQFALERGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 13 p~D~se~~vq~A~erg~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
..|.++.+++.|+++.. .+.+..+|.+.+|+++++||+|+|+.+++|..+.. ..+.++.|+|||||+++++.+
T Consensus 63 ~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~-~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 63 ALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLS-QALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred EEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHH-HHHHHHHHHcCCCcEEEEEeC
Confidence 34556789988888753 35677889999999999999999999987766666 999999999999999999875
No 30
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.45 E-value=4e-07 Score=86.40 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=61.1
Q ss_pred CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068 5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis 84 (378)
.|+++++ |+.|++.|+++...+.+..+|++.++ ++++||+|+|+.+++|..+.. .+++++.|+|||||+|+++
T Consensus 57 ~v~gvD~-----s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~-~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 57 RITGIDS-----SPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHL-ELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEEEEC-----CHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCCCHH-HHHHHHHHhcCCCcEEEEE
Confidence 4565554 46899999988656778888887765 567999999999987666655 9999999999999999998
Q ss_pred cC
Q 017068 85 GP 86 (378)
Q Consensus 85 ~p 86 (378)
.+
T Consensus 130 ~~ 131 (258)
T PRK01683 130 MP 131 (258)
T ss_pred CC
Confidence 65
No 31
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.42 E-value=4.8e-07 Score=84.26 Aligned_cols=76 Identities=25% Similarity=0.395 Sum_probs=61.4
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 79 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG 79 (378)
.|++++++ +.+++.|+++ +. .+.+..+|++.+|+++++||+|++..+++|..+.. .+++|+.|+|||||
T Consensus 72 ~v~gvD~s-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~-~~l~~~~~~Lk~gG 145 (231)
T TIGR02752 72 HVIGLDFS-----ENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYM-QVLREMYRVVKPGG 145 (231)
T ss_pred EEEEEECC-----HHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHH-HHHHHHHHHcCcCe
Confidence 45666655 5778777765 23 35677889999999999999999999888777766 99999999999999
Q ss_pred EEEEEcC
Q 017068 80 YLVISGP 86 (378)
Q Consensus 80 ~lvis~p 86 (378)
++++..+
T Consensus 146 ~l~~~~~ 152 (231)
T TIGR02752 146 KVVCLET 152 (231)
T ss_pred EEEEEEC
Confidence 9998654
No 32
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.41 E-value=1.2e-08 Score=88.31 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=68.9
Q ss_pred CCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCCCccccccccCccccccC
Q 017068 223 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN 301 (378)
Q Consensus 223 ~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~ 301 (378)
..-.+|||+|||+|.|+..|.+.+. +++-.|.. ..+.. +-.....++-.++ +..+++||+|.|..+|.+..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhcc-
Confidence 3456999999999999999988776 66666655 44444 2222222211111 12248999999999999764
Q ss_pred CCCCCCCCCccceeeeecccccCCCeEEEeCCH
Q 017068 302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 334 (378)
Q Consensus 302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~ 334 (378)
+...+|-+|-|+|+|||++++.+..
T Consensus 93 --------d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 --------DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --------HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --------cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 3578999999999999999999754
No 33
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.37 E-value=3.5e-07 Score=87.19 Aligned_cols=71 Identities=20% Similarity=0.165 Sum_probs=57.7
Q ss_pred CChHHHHHHHHHc----CC--CeEEEEcccCCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 15 DSHKAQIQFALER----GI--PAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 15 D~se~~vq~A~er----g~--~~~~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
|.|+.|++.|+++ |+ .+.+..++++.++ +++++||+|+|..+++|+.++. .+++++.|+|||||++++...
T Consensus 73 D~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~-~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 73 DLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPK-SVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred ECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHH-HHHHHHHHHcCCCeEEEEEEE
Confidence 4556888888775 32 3567778887774 7889999999999998887776 999999999999999998654
No 34
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.33 E-value=2.7e-07 Score=79.75 Aligned_cols=52 Identities=42% Similarity=0.787 Sum_probs=45.1
Q ss_pred EcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCC
Q 017068 35 MLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 87 (378)
Q Consensus 35 v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp 87 (378)
..+....++++++||+|+|..+++|.+++. .+|+++.|+|||||+++++.+.
T Consensus 66 ~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~-~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 66 NFDAQDPPFPDGSFDLIICNDVLEHLPDPE-EFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp EEECHTHHCHSSSEEEEEEESSGGGSSHHH-HHHHHHHHCEEEEEEEEEEEEB
T ss_pred hhhhhhhhccccchhhHhhHHHHhhcccHH-HHHHHHHHhcCCCCEEEEEEcC
Confidence 333446678899999999999999998766 9999999999999999999873
No 35
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.33 E-value=2e-07 Score=88.84 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=70.5
Q ss_pred hcCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCCCccccccccCc
Q 017068 219 KLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 219 ~~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~ 295 (378)
.+....-..|||+|||+|.++..|..+ .. .|+-.|.+ .++..+-++++-=+..|-. .++ ...+||+|+|..+
T Consensus 24 ~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~---~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~ 98 (255)
T PRK14103 24 RVGAERARRVVDLGCGPGNLTRYLARRWPGA---VIEALDSSPEMVAAARERGVDARTGDVR-DWK-PKPDTDVVVSNAA 98 (255)
T ss_pred hCCCCCCCEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHhcCCcEEEcChh-hCC-CCCCceEEEEehh
Confidence 344334478999999999999888765 22 45666655 8888888887522222322 232 2368999999988
Q ss_pred cccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
|.... +...+|-|+-|+|+|||++++.
T Consensus 99 l~~~~---------d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 99 LQWVP---------EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hhhCC---------CHHHHHHHHHHhCCCCcEEEEE
Confidence 87543 2357889999999999999986
No 36
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.30 E-value=1e-06 Score=77.26 Aligned_cols=70 Identities=33% Similarity=0.506 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHc----CCC-eEEEEcccCCCC--CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 15 DSHKAQIQFALER----GIP-AFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 15 D~se~~vq~A~er----g~~-~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
|.|+.|++.|+++ +.+ +.+.++|++.++ |+ +.||+|++..+++|+.+.. .+++++.|+|++||.++++.+
T Consensus 35 D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~-~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 35 DISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPE-KVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHH-HHHHHHHHHEEEEEEEEEEEE
T ss_pred ECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCchhhccCHH-HHHHHHHHHcCCCcEEEEEEC
Confidence 4457999999884 554 788999998888 87 9999999999887777776 999999999999999999876
No 37
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.29 E-value=1e-07 Score=90.76 Aligned_cols=115 Identities=22% Similarity=0.216 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc------ccccc
Q 017068 202 SRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL------IGVYH 274 (378)
Q Consensus 202 ~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl------ig~~~ 274 (378)
.+.|++.+.+... ...|. .|||++||+|-++..|..+---.-.|+-.|-+ ++|.++-+|-- |-...
T Consensus 32 ~~~wr~~~~~~~~-----~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~ 104 (233)
T PF01209_consen 32 DRRWRRKLIKLLG-----LRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQ 104 (233)
T ss_dssp -----SHHHHHHT-------S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred HHHHHHHHHhccC-----CCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEE
Confidence 3678887655332 23333 89999999999888776532111256777876 99988877643 11111
Q ss_pred cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
.=.|.+|.-..|||.|-|+..+... ++....|-||-|||||||.++|-|
T Consensus 105 ~da~~lp~~d~sfD~v~~~fglrn~---------~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 105 GDAEDLPFPDNSFDAVTCSFGLRNF---------PDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -BTTB--S-TT-EEEEEEES-GGG----------SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCHHHhcCCCCceeEEEHHhhHHhh---------CCHHHHHHHHHHHcCCCeEEEEee
Confidence 1134455334899999998777644 345789999999999999998875
No 38
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.28 E-value=1.7e-06 Score=81.47 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=59.3
Q ss_pred CeEEEecCCCCChHHHHHHHHHc------CCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccC
Q 017068 5 NILTLSFAPRDSHKAQIQFALER------GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRP 77 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er------g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkP 77 (378)
.|++++++ +.|++.|+++ ...+.+..+|...+|+++ ||+|+|+++++|+.+.+ ..+++++.|+|||
T Consensus 81 ~v~gvD~s-----~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkp 153 (239)
T TIGR00740 81 KIIGIDNS-----QPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVILNFTLQFLPPEDRIALLTKIYEGLNP 153 (239)
T ss_pred eEEEEeCC-----HHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEeeecchhhCCHHHHHHHHHHHHHhcCC
Confidence 35555554 6888888775 224678888999988864 89999999988876532 5899999999999
Q ss_pred CcEEEEEcC
Q 017068 78 GGYLVISGP 86 (378)
Q Consensus 78 GG~lvis~p 86 (378)
||.|+++.+
T Consensus 154 gG~l~i~d~ 162 (239)
T TIGR00740 154 NGVLVLSEK 162 (239)
T ss_pred CeEEEEeec
Confidence 999999875
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.26 E-value=4.4e-07 Score=88.37 Aligned_cols=114 Identities=13% Similarity=0.139 Sum_probs=76.1
Q ss_pred EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHH----Hhhcc-c-cccccccccCCCCCCccccccccCccccc
Q 017068 227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGL-I-GVYHDWCEPFSTYPRTYDLIHVSGIESLI 299 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i----~eRGl-i-g~~~~w~~~f~typrtyDliH~~~~~~~~ 299 (378)
+|||+|||+|.++.+|..+.. .|...|.+ ..++.+ .+.|+ + ....|..+ + ..+.+||+|.+..+|...
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~-~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-A-SIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-c-cccCCccEEEEcchhhhC
Confidence 799999999999999988764 66777765 555543 34455 1 11222222 1 126899999999887654
Q ss_pred cCCCCCCCCCCccceeeeecccccCCCeEEEeC---CH-----------HHHHHHHHHHhcCCceEEEe
Q 017068 300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD---SP-----------EVIDKVSRIANTVRWTAAVH 354 (378)
Q Consensus 300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d---~~-----------~~~~~~~~~~~~l~W~~~~~ 354 (378)
. .-.+..++-+|.|+|+|||++++-. +. -.-.+++++.+. |++..+
T Consensus 198 ~-------~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 N-------RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred C-------HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 2 2345689999999999999965531 10 123456666665 888764
No 40
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.25 E-value=1.3e-06 Score=86.96 Aligned_cols=55 Identities=29% Similarity=0.318 Sum_probs=49.3
Q ss_pred CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 30 PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 30 ~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
++.+..++.+.+|+ +++||+|+|..+++|..++. .+++++.|+|||||.|+++..
T Consensus 173 ~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~-~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 173 RAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPL-DHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHH-HHHHHHHHhcCCCcEEEEEEE
Confidence 56788889999999 88999999999999988777 999999999999999998753
No 41
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.25 E-value=2.2e-07 Score=85.51 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=64.3
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH----hhccc--cccccccccCCCCCCccccccccCcccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGLI--GVYHDWCEPFSTYPRTYDLIHVSGIESL 298 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~----eRGli--g~~~~w~~~f~typrtyDliH~~~~~~~ 298 (378)
..|||+|||+|.++..|..+.- .|...|.+ .++..+- +.|+- ....+.. .+ .++.+||+|.|..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~-~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AA-ALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hc-cccCCCCEEEEeccccc
Confidence 4799999999999999987753 66777766 6665443 33441 1222222 12 23568999999888765
Q ss_pred ccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068 299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 330 (378)
Q Consensus 299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii 330 (378)
.. .-....++-++.|.|+|||++++
T Consensus 107 ~~-------~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQ-------AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CC-------HHHHHHHHHHHHHHhCCCcEEEE
Confidence 42 22456799999999999999544
No 42
>PLN02244 tocopherol O-methyltransferase
Probab=98.24 E-value=7.5e-07 Score=88.98 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=63.4
Q ss_pred eeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHH----hhcccc----ccccccccCCCCCCccccccccC
Q 017068 225 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIY----DRGLIG----VYHDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~----eRGlig----~~~~w~~~f~typrtyDliH~~~ 294 (378)
-..|||+|||.|+++..|..+ .. +|+-.|.+ .++..+- ++|+.. ...|.. .+|.-+.+||+|.|..
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-NQPFEDGQFDLVWSME 194 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-cCCCCCCCccEEEECC
Confidence 467999999999999888764 33 44444544 5554433 335421 122332 2332248999999987
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
.+.++. +...+|-||-|+|||||.++|.+
T Consensus 195 ~~~h~~---------d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMP---------DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 776553 23578999999999999999853
No 43
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.23 E-value=2.6e-07 Score=85.20 Aligned_cols=93 Identities=17% Similarity=0.275 Sum_probs=65.1
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHH----Hhhccc---cccccccccCCCCCCccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLI---GVYHDWCEPFSTYPRTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i----~eRGli---g~~~~w~~~f~typrtyDliH~~~~~~ 297 (378)
-.|||+|||.|.++..|.++.. +|...|.+ .+++.+ .++|+- ....|..+ + +++.+||+|.|..+|.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 4799999999999999998754 66777765 555443 334442 22334432 2 2357899999988875
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 330 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii 330 (378)
.+. ......++-+|-|.|+|||++++
T Consensus 107 ~~~-------~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLE-------AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCC-------HHHHHHHHHHHHHHcCCCcEEEE
Confidence 432 22346899999999999999655
No 44
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.20 E-value=1.1e-06 Score=83.48 Aligned_cols=118 Identities=16% Similarity=0.212 Sum_probs=73.0
Q ss_pred cCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhcc-cccc-ccccccCCCCCCccccccccC
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IGVY-HDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~-~~w~~~f~typrtyDliH~~~ 294 (378)
+....-.+|||+|||.|.++..|... .- +|+-.|.+ .++..+-++-- +... .|-.+ +. .+.+||+|+|+.
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~ 101 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPAA---RITGIDSSPAMLAEARSRLPDCQFVEADIAS-WQ-PPQALDLIFANA 101 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHhCCCCeEEECchhc-cC-CCCCccEEEEcc
Confidence 33344578999999999999888653 22 44556655 66665555421 1111 12111 21 246999999998
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----HHHHHHHHHHhcCCceE
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----EVIDKVSRIANTVRWTA 351 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----~~~~~~~~~~~~l~W~~ 351 (378)
+|.... +...+|-+|-|+|+|||.+++.-.. .....+++++....|..
T Consensus 102 ~l~~~~---------d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 102 SLQWLP---------DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred ChhhCC---------CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 886443 2357899999999999999986311 11123445555555553
No 45
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.19 E-value=2.6e-07 Score=89.97 Aligned_cols=96 Identities=20% Similarity=0.335 Sum_probs=63.3
Q ss_pred cCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHH----HHhhcccc----ccccccccCCCCCCcccc
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSV----IYDRGLIG----VYHDWCEPFSTYPRTYDL 289 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~----i~eRGlig----~~~~w~~~f~typrtyDl 289 (378)
|+.|. .|||+|||.||++-.+..+ ++ +|+-.+.+ +|+.. +-++||-. ...|+.+ .+-+||-
T Consensus 60 l~~G~--~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~----~~~~fD~ 130 (273)
T PF02353_consen 60 LKPGD--RVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD----LPGKFDR 130 (273)
T ss_dssp --TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SE
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc----cCCCCCE
Confidence 66664 8999999999999999887 77 44444444 66654 45778743 2334443 3348999
Q ss_pred ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
|-+-..|.+.. +-+...++-+++|+|+|||.+++.
T Consensus 131 IvSi~~~Ehvg-------~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 131 IVSIEMFEHVG-------RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEESEGGGTC-------GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEEechhhcC-------hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99988887652 334568899999999999999986
No 46
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.18 E-value=9.2e-07 Score=88.18 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=70.0
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc----c---ccccccccccCCCCCCccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----L---IGVYHDWCEPFSTYPRTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG----l---ig~~~~w~~~f~typrtyDliH~~~~~~ 297 (378)
..|||+|||.|.|+..|..... +|.-.|.+ .+++++-++. + +-..+.=.+.++..+.+||+|-|..++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3799999999999988877654 66777876 7777776552 1 1112211234554457999999998888
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
... +...+|-|+-|+|+|||.+++..
T Consensus 210 Hv~---------d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HVA---------NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hcC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 664 23679999999999999999985
No 47
>PRK06922 hypothetical protein; Provisional
Probab=98.17 E-value=3.2e-06 Score=91.02 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=60.3
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCC--CCCCceeEEEecCccccccC------------ChHH
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTA------------YNAT 66 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~------------~~~~ 66 (378)
+|+++|+ |+.|++.|+++ +.++.+..+|+..+| |++++||+|+++.+++||.+ ....
T Consensus 444 kVtGIDI-----S~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~k 518 (677)
T PRK06922 444 RIYGIDI-----SENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKK 518 (677)
T ss_pred EEEEEEC-----CHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHH
Confidence 4555554 56888888775 344566778888888 89999999999998887632 2248
Q ss_pred HHHHHhhcccCCcEEEEEcC
Q 017068 67 YLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 67 ~L~Ev~RVLkPGG~lvis~p 86 (378)
+++++.|+|||||++++...
T Consensus 519 iLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 519 GLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHHHHHHcCCCcEEEEEeC
Confidence 99999999999999999764
No 48
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.17 E-value=2.6e-06 Score=78.97 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 15 DSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 15 D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
|.|+.|++.|+++ |. .+.+...|..+.|++ ++||+|++..+++|+.+.. .+++++.|+|||||+++++.+
T Consensus 30 d~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~~-~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 30 TISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKDKM-DLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred ECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhCCCHH-HHHHHHHHHcCCCCEEEEEEc
Confidence 3467888888875 33 246677787777876 4899999999999987766 999999999999999999865
No 49
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.16 E-value=7.3e-07 Score=85.99 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=64.5
Q ss_pred eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcc----cc-ccccccccCCCCC-CccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL----IG-VYHDWCEPFSTYP-RTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGl----ig-~~~~w~~~f~typ-rtyDliH~~~~~~ 297 (378)
..|||+|||+|+++..|... .. .|+-.|.+ +++..+-+|-- +- ...|.. .. +|| .+||+|++..++.
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~-~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KK-DFPENTFDMIYSRDAIL 128 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cC-CCCCCCeEEEEEhhhHH
Confidence 47999999999998888643 32 55666655 77776666532 11 112222 12 244 7999999976665
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 333 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~ 333 (378)
++. ..+...++-|+-|+|+|||++++.|.
T Consensus 129 h~~-------~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HLS-------YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hCC-------HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 431 11346799999999999999999863
No 50
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.15 E-value=4.8e-07 Score=83.89 Aligned_cols=93 Identities=24% Similarity=0.368 Sum_probs=62.8
Q ss_pred eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh----hccc---ccc-ccccccCCCCCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD----RGLI---GVY-HDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e----RGli---g~~-~~w~~~f~typrtyDliH~~~ 294 (378)
+.|||+|||.|+++..+... +. +|.-.|.+ +++..+-+ .|+- -++ .|..+ . +++.+||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHH
Confidence 36999999999998887643 23 34444444 66654444 3442 222 23222 1 3467899999988
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
++.... +...++-++.|+|+|||++++.+
T Consensus 76 ~l~~~~---------~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHHIK---------DKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHhCC---------CHHHHHHHHHHHcCCCCEEEEEE
Confidence 877543 23678999999999999999975
No 51
>PRK08317 hypothetical protein; Provisional
Probab=98.15 E-value=1.2e-06 Score=80.47 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=69.6
Q ss_pred HHHHhhhhcCCCCeeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh--cc---cccc-ccccccCC
Q 017068 212 YKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR--GL---IGVY-HDWCEPFS 281 (378)
Q Consensus 212 Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR--Gl---ig~~-~~w~~~f~ 281 (378)
|.+.+...+.-..-.+|||+|||.|.++..+.+. .. +++-.|.+ .++..+-++ +. +-.. .|.. .++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~---~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~ 82 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEG---RVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLP 82 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCc---EEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCC
Confidence 4433333333334468999999999998887653 12 44555655 667777666 11 1111 1221 122
Q ss_pred CCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 282 TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 282 typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
.-+.+||+||+..+|.... +...++-++-|+|+|||++++.+
T Consensus 83 ~~~~~~D~v~~~~~~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHLE---------DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCCCceEEEEechhhccC---------CHHHHHHHHHHHhcCCcEEEEEe
Confidence 2237999999999887654 23678999999999999999864
No 52
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.15 E-value=3e-06 Score=84.24 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=47.5
Q ss_pred CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 30 PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 30 ~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.+.+..++.+.+|+. ++||+|+|+.+++|+.++. .+|+|++|+|||||.|++...
T Consensus 172 ~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~-~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 172 RAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPL-EHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHH-HHHHHHHHhcCCCCEEEEEEE
Confidence 355677788889875 4899999999999998877 999999999999999998754
No 53
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.14 E-value=3.1e-06 Score=80.65 Aligned_cols=71 Identities=23% Similarity=0.193 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068 14 RDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.|.|+.|++.|+++ +. .+.+..+++..+|+++ ||+|+|+.+++|+.+.. ..+++++.|+|||||.|+++..
T Consensus 88 vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 88 IDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 34556888888876 22 4677888888888864 89999999998876543 4799999999999999999864
No 54
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.13 E-value=4.5e-07 Score=86.48 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=67.3
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc---cc-ccccccCC-CCCCccccccccCc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG---VY-HDWCEPFS-TYPRTYDLIHVSGI 295 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~-~~w~~~f~-typrtyDliH~~~~ 295 (378)
..|||+|||.|.++..|..+.. +|+-.|.+ .++..+-++ |+.. +. .+..+ ++ ..+.+||+|.|..+
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~-l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD-IAQHLETPVDLILFHAV 121 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH-HhhhcCCCCCEEEehhH
Confidence 5899999999999999988765 67777776 777766554 4321 11 12221 22 23489999999988
Q ss_pred cccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
+.... +...+|-|+-|+|+|||++++.
T Consensus 122 l~~~~---------~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWVA---------DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhhC---------CHHHHHHHHHHHcCCCeEEEEE
Confidence 87654 2257899999999999999875
No 55
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.13 E-value=1.3e-06 Score=84.23 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=63.4
Q ss_pred eeEEEecCCcceeeeeeccCC-C-eeEEEeccCCCC-cchHHHHhhcc-ccc-cccccccCCCCCCccccccccCccccc
Q 017068 225 IRNIMDMNAFFGGFAAALTSD-P-VWVMNVVPARKS-STLSVIYDRGL-IGV-YHDWCEPFSTYPRTYDLIHVSGIESLI 299 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~-~-vwvmnv~p~~~~-~~l~~i~eRGl-ig~-~~~w~~~f~typrtyDliH~~~~~~~~ 299 (378)
-.+|||+|||.|.++..|.+. + .-..+|+-.|.+ .++..+.+|.- +.. ..|- +.+|.-+.+||+|.+. |+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~~--~~-- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HRLPFADQSLDAIIRI--YA-- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-ccCCCcCCceeEEEEe--cC--
Confidence 356999999999999888643 1 101246677766 88888877642 111 1221 1233223799999863 22
Q ss_pred cCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHH
Q 017068 300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSR 342 (378)
Q Consensus 300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~ 342 (378)
...+-|+.|+|+|||++|+.... ..+.+++.
T Consensus 161 ------------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~ 192 (272)
T PRK11088 161 ------------PCKAEELARVVKPGGIVITVTPGPRHLFELKG 192 (272)
T ss_pred ------------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHH
Confidence 12356899999999999987542 23334443
No 56
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.12 E-value=2.1e-06 Score=69.51 Aligned_cols=71 Identities=30% Similarity=0.345 Sum_probs=37.0
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----C-CCeEEEEcccCCCC--CCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP 77 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g-~~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP 77 (378)
.+++++++|. |++.|+++ + ............+. .+.++||+|+++.+++|+.+.. .+++.+.++|||
T Consensus 22 ~~~~~D~s~~-----~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~-~~l~~~~~~L~p 95 (99)
T PF08242_consen 22 RYTGVDISPS-----MLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIE-AVLRNIYRLLKP 95 (99)
T ss_dssp EEEEEESSSS-----TTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S-HH-HHHHHHTTT-TS
T ss_pred EEEEEECCHH-----HHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhhHH-HHHHHHHHHcCC
Confidence 4567777764 44444443 2 22223333332222 2236999999999999985555 999999999999
Q ss_pred CcEE
Q 017068 78 GGYL 81 (378)
Q Consensus 78 GG~l 81 (378)
||.|
T Consensus 96 gG~l 99 (99)
T PF08242_consen 96 GGIL 99 (99)
T ss_dssp S-EE
T ss_pred CCCC
Confidence 9986
No 57
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.12 E-value=4.5e-06 Score=76.96 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=53.8
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCC-hHHHHHHHhhcccCC
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPG 78 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLkPG 78 (378)
.|++++ .|+.+++.|+++ ++. +.+.++|...++++ ++||+|+|+.+++|+... ...+++++.|+||||
T Consensus 54 ~V~gvD-----~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 54 DVTAWD-----KNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred EEEEEe-----CCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC
Confidence 455564 456777776653 443 56677788778885 679999999988766542 358999999999999
Q ss_pred cEEEE
Q 017068 79 GYLVI 83 (378)
Q Consensus 79 G~lvi 83 (378)
|++++
T Consensus 128 G~~~~ 132 (197)
T PRK11207 128 GYNLI 132 (197)
T ss_pred cEEEE
Confidence 99654
No 58
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.10 E-value=5.5e-06 Score=77.25 Aligned_cols=70 Identities=20% Similarity=0.136 Sum_probs=56.3
Q ss_pred CCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEc
Q 017068 13 PRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 13 p~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~ 85 (378)
..|+|+.+++.|+++...+.+..+++.. ||++++||+|+|..+++|+.... ..+++|+.|++ +++++++.
T Consensus 72 giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 72 GVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 3455679999999875556677788777 99999999999999999986432 58999999998 57887764
No 59
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.10 E-value=2.7e-06 Score=81.52 Aligned_cols=91 Identities=16% Similarity=0.298 Sum_probs=60.4
Q ss_pred CCCChHHHHHHHHHcCCCeEE-----EEcccCCCCCC--CCceeEEEecCccccccCChHHHHHHHhhcccCCc-EEEEE
Q 017068 13 PRDSHKAQIQFALERGIPAFV-----AMLGTRRLPFP--AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG-YLVIS 84 (378)
Q Consensus 13 p~D~se~~vq~A~erg~~~~~-----~v~dae~LPfp--d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG-~lvis 84 (378)
..|.|++|+++|++. .++.. ...+.+-.++- ++|.|+|+|++|+ ||-+.+ ++++++.||||+.| .+++-
T Consensus 60 atD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~-HWFdle-~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 60 ATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV-HWFDLE-RFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred eecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhhhH-HhhchH-HHHHHHHHHcCCCCCEEEEE
Confidence 457779999999885 33332 22233444554 9999999999996 999999 99999999999977 55442
Q ss_pred cCCCCCCccchHHHHHHHHHHHhcee
Q 017068 85 GPPVQWPKQDKEWADLQAVARALCYE 110 (378)
Q Consensus 85 ~pp~~~~~~~~~w~~l~~l~~~lcw~ 110 (378)
.-.-+. -.|-+..++..+++|+
T Consensus 137 ~Y~dd~----v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 137 NYNDDF----VDWPEFDSVMLRLYDS 158 (261)
T ss_pred EccCCC----cCCHHHHHHHHHHhhc
Confidence 221011 1133445555666665
No 60
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.10 E-value=4.6e-06 Score=76.79 Aligned_cols=73 Identities=16% Similarity=0.306 Sum_probs=53.7
Q ss_pred CeEEEecCCCCChHHHHHHHHH----cCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCc
Q 017068 5 NILTLSFAPRDSHKAQIQFALE----RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGG 79 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~e----rg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG 79 (378)
.|+++|++ +.+++.|++ .++++...+++....+++ ++||+|+|+.+++|+.... ..+++++.|+|||||
T Consensus 54 ~V~~iD~s-----~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 127 (195)
T TIGR00477 54 DVRAWDHN-----PASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGG 127 (195)
T ss_pred eEEEEECC-----HHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCc
Confidence 45665555 567766544 466666667777667775 5899999999888775432 489999999999999
Q ss_pred EEEE
Q 017068 80 YLVI 83 (378)
Q Consensus 80 ~lvi 83 (378)
++++
T Consensus 128 ~lli 131 (195)
T TIGR00477 128 YNLI 131 (195)
T ss_pred EEEE
Confidence 9654
No 61
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.09 E-value=2.7e-07 Score=75.75 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=63.9
Q ss_pred eEEEecCCcceeeeeeccC--CCeeEEEeccCCCC-cchHHHHhhc----c---cc-ccccccccCCCCCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLSVIYDRG----L---IG-VYHDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~-~~l~~i~eRG----l---ig-~~~~w~~~f~typrtyDliH~~~ 294 (378)
..|||+|||+|.++.+|.. ... .|+-.|.+ ..++.+-+|- . +- ...|+ ......+..||+|.+..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 3689999999999999988 555 45666655 6666555554 2 22 22334 11234445699999998
Q ss_pred -ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 295 -IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 295 -~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
++..+. .......+|-++-+.|||||+++|++
T Consensus 79 ~~~~~~~------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLL------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCC------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Ccccccc------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 333222 11122456888999999999999974
No 62
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.07 E-value=9.3e-06 Score=74.19 Aligned_cols=71 Identities=30% Similarity=0.315 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHcCC---CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 15 DSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 15 D~se~~vq~A~erg~---~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
|.++.+++.++++.. .+.+..+++..+|+++++||+|+++.+++|..+.. .+++++.++|+|||++++...
T Consensus 71 D~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~-~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 71 DFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQ-KALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred ECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHH-HHHHHHHHHcCCCcEEEEEEe
Confidence 344688888877642 35677888889999999999999999988877766 999999999999999998654
No 63
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.07 E-value=4.2e-05 Score=78.01 Aligned_cols=129 Identities=14% Similarity=0.111 Sum_probs=77.0
Q ss_pred eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc-----ccccccccccCCCC-CCccccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL-----IGVYHDWCEPFSTY-PRTYDLIHV 292 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl-----ig~~~~w~~~f~ty-prtyDliH~ 292 (378)
..|||+|||+|-.|.+|..+ .. .|+-+|.+ ..+..+-+. +. +-++. ...++.. +.+||+|-|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~---~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQA---KVVFVDESPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEE
Confidence 47999999999999888754 23 45566655 455443321 11 12222 2223333 358999999
Q ss_pred cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC--CHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEE
Q 017068 293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD--SPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVAT 370 (378)
Q Consensus 293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d--~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~ 370 (378)
+-.|..-.. . ..-....++-+.-|+|+|||.+++-. ..++..+++++.. ++..... ..+=+|+-++
T Consensus 305 NPPfh~~~~--~--~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~----~~kf~vl~a~ 372 (378)
T PRK15001 305 NPPFHQQHA--L--TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIAT----NNKFVVLKAV 372 (378)
T ss_pred CcCcccCcc--C--CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEcc----CCCEEEEEEE
Confidence 877753210 0 00012467788999999999998874 3456666666543 2333322 2456788777
Q ss_pred e
Q 017068 371 K 371 (378)
Q Consensus 371 K 371 (378)
|
T Consensus 373 k 373 (378)
T PRK15001 373 K 373 (378)
T ss_pred e
Confidence 7
No 64
>PRK05785 hypothetical protein; Provisional
Probab=98.06 E-value=2.4e-06 Score=80.75 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhccccccccccccC
Q 017068 203 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPF 280 (378)
Q Consensus 203 ~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f 280 (378)
..|++.+-...... +.. -.+|||+|||+|.++..|.+. +. +|+-.|.+ ++|+.+-+++- ..+.-.+.+
T Consensus 35 ~~wr~~~~~~l~~~---~~~--~~~VLDlGcGtG~~~~~l~~~~~~---~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~l 104 (226)
T PRK05785 35 VRWRAELVKTILKY---CGR--PKKVLDVAAGKGELSYHFKKVFKY---YVVALDYAENMLKMNLVADD--KVVGSFEAL 104 (226)
T ss_pred HHHHHHHHHHHHHh---cCC--CCeEEEEcCCCCHHHHHHHHhcCC---EEEEECCCHHHHHHHHhccc--eEEechhhC
Confidence 56877664433221 122 258999999999999888776 33 67888877 89988877642 122233445
Q ss_pred CCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCC
Q 017068 281 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEG 326 (378)
Q Consensus 281 ~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG 326 (378)
|.-+.+||+|.|+..+..+. +.+..|-||.|+|||.+
T Consensus 105 p~~d~sfD~v~~~~~l~~~~---------d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASD---------NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCEEEEEecChhhccC---------CHHHHHHHHHHHhcCce
Confidence 53348999999987765432 45789999999999953
No 65
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.06 E-value=2e-06 Score=83.26 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=87.3
Q ss_pred cCccccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCccee----eeeeccCC----CeeEEEeccCCCC-cchHH
Q 017068 193 NGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGG----FAAALTSD----PVWVMNVVPARKS-STLSV 263 (378)
Q Consensus 193 ~~~~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~----faa~L~~~----~vwvmnv~p~~~~-~~l~~ 263 (378)
++.+.|-.|..+|..-.+.....+......+.--.|+|+|||+|- +|..|.+. .-|...|..+|-+ ..|..
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 345678899999998777666544322222333579999999994 56555432 1244578888876 77765
Q ss_pred HHhhcccc-----------------------------------ccccccccCCCCCCccccccccCccccccCCCCCCCC
Q 017068 264 IYDRGLIG-----------------------------------VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNS 308 (378)
Q Consensus 264 i~eRGlig-----------------------------------~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~ 308 (378)
+- +|.-+ ..||-.+. ++.+..||+|.|..+|.++. .
T Consensus 148 Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf~-------~ 218 (264)
T smart00138 148 AR-AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE-SPPLGDFDLIFCRNVLIYFD-------E 218 (264)
T ss_pred HH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC-CCccCCCCEEEechhHHhCC-------H
Confidence 54 33210 12343332 21247999999999988774 1
Q ss_pred CCccceeeeecccccCCCeEEEeCCH
Q 017068 309 CSLVDLMVEMDRMLRPEGTVVVRDSP 334 (378)
Q Consensus 309 c~~~~~l~EmDRiLRPgG~~ii~d~~ 334 (378)
-....++-++-|+|+|||++++-...
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 11246999999999999999997654
No 66
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.06 E-value=2.6e-06 Score=78.46 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=63.8
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc---ccccccccccCCCCCCccccccccCccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN 301 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~~~w~~~f~typrtyDliH~~~~~~~~~~ 301 (378)
..|||+|||.|.|+..|....- ...+.-.|.+ ..+..+.++.- .-+..|.. .++..+.+||+|.|..++....
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~vi~~~~l~~~~- 112 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAE-KLPLEDSSFDLIVSNLALQWCD- 112 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchh-hCCCCCCceeEEEEhhhhhhcc-
Confidence 5799999999999988875421 0123444544 55555554431 11222222 2343457999999998876432
Q ss_pred CCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
+...+|-++.|+|+|||++++..
T Consensus 113 --------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 --------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 34679999999999999999975
No 67
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.05 E-value=4.3e-06 Score=75.96 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=70.7
Q ss_pred eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh----hccc--cccccccccCCCCCCccccccccCc
Q 017068 225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD----RGLI--GVYHDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e----RGli--g~~~~w~~~f~typrtyDliH~~~~ 295 (378)
-.+|||+|||+|.++.++..+ +. +|.-.|.+ ..++.+-+ .|+- -++. ......++..||+|.++..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~--~d~~~~~~~~~D~v~~~~~ 106 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSL---QVTAIERNPDALRLIKENRQRFGCGNIDIIP--GEAPIELPGKADAIFIGGS 106 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCCeEEEe--cCchhhcCcCCCEEEECCC
Confidence 357999999999999877643 22 45555654 45544432 2321 1111 0111234578999998644
Q ss_pred cccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCCce
Q 017068 296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWT 350 (378)
Q Consensus 296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~W~ 350 (378)
.. .+..++-++-|+|+|||++++.. ..+...++.+++++..++
T Consensus 107 ~~------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 107 GG------------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred cc------------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 32 34567888999999999999976 456667777788777775
No 68
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.04 E-value=2e-06 Score=79.76 Aligned_cols=126 Identities=12% Similarity=0.127 Sum_probs=78.5
Q ss_pred CeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCC-C-CCcccccc
Q 017068 224 AIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFST-Y-PRTYDLIH 291 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~t-y-prtyDliH 291 (378)
.-.+|||+|||+|.++..|... .. +|+-+|.+ ..++.+-++ |+ +- +..|..+.++. + +.+||+|.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~---~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDI---NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCc---cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEE
Confidence 3578999999999999888653 22 45666654 555544432 33 11 22233233431 3 47899998
Q ss_pred ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHHhcCCceEEE
Q 017068 292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAAV 353 (378)
Q Consensus 292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~~~l~W~~~~ 353 (378)
+.... .|........+.....+|-++.|+|+|||.+++. +.......+.+.+.+--|.+..
T Consensus 117 ~~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 117 LNFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred EECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 75432 2321111222333567899999999999999987 5566777777766666677663
No 69
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.04 E-value=1e-06 Score=84.51 Aligned_cols=97 Identities=23% Similarity=0.225 Sum_probs=73.9
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-cccc-----ccccccCCCCCCccccccccCcccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IGVY-----HDWCEPFSTYPRTYDLIHVSGIESL 298 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~-----~~w~~~f~typrtyDliH~~~~~~~ 298 (378)
-+|||++||+|-+|..+.+.-= .-.|+-.|-+ ++|.++-+|-- .|.. +-=-|.+|..++|||++-++..+-.
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrn 131 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRN 131 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhc
Confidence 5799999999999998875542 4477888876 99999998877 2311 2222346644499999999877765
Q ss_pred ccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
.. ++...|-||-|||+|||-+++-+
T Consensus 132 v~---------d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 132 VT---------DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred CC---------CHHHHHHHHHHhhcCCeEEEEEE
Confidence 43 46789999999999999888765
No 70
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.03 E-value=6.1e-06 Score=74.45 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=78.5
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCCCCccccccccCcccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYDLIHVSGIESL 298 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~typrtyDliH~~~~~~~ 298 (378)
+.|||+|||+|.++..+..... .|+-.|.+ .++..+-++ |+ +- +..|+.+. .+.+||+|-++-.+..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4599999999999988887654 45556654 555443332 22 11 22344432 2469999999876653
Q ss_pred ccCCCCC------------CCCCCccceeeeecccccCCCeEEEeCCHHH-HHHHHHHHhcCCceEEEec
Q 017068 299 IKNPGSN------------KNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV-IDKVSRIANTVRWTAAVHD 355 (378)
Q Consensus 299 ~~~~~~~------------~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~-~~~~~~~~~~l~W~~~~~~ 355 (378)
..+.... ..+.-+..+|-|+.|+|+|||.+++...... ..++.++++..-++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 3211110 0122256789999999999999988765443 5666667777777776543
No 71
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.03 E-value=1.2e-05 Score=66.04 Aligned_cols=75 Identities=27% Similarity=0.342 Sum_probs=54.9
Q ss_pred CeEEEecCCCCChHHHHHHHHHcC------CCeEEEEccc-CCCCCCCCceeEEEecC-ccccccC--ChHHHHHHHhhc
Q 017068 5 NILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGT-RRLPFPAFSFDIVHCSR-CLIPFTA--YNATYLIEVDRL 74 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg------~~~~~~v~da-e~LPfpd~SFD~V~cs~-~l~hw~~--~~~~~L~Ev~RV 74 (378)
.|++++++ +.+++.|+++. ..+.+..+|+ ....+. +.||+|++.. ++.++.. ....+++++.+.
T Consensus 27 ~v~gvD~s-----~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~ 100 (112)
T PF12847_consen 27 RVVGVDIS-----PEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFTLHFLLPLDERRRVLERIRRL 100 (112)
T ss_dssp EEEEEESS-----HHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGSGGGCCHHHHHHHHHHHHHHH
T ss_pred EEEEEeCC-----HHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCccccccchhHHHHHHHHHHHh
Confidence 46666665 57888887763 4577888888 444443 4599999998 5554433 235899999999
Q ss_pred ccCCcEEEEEc
Q 017068 75 LRPGGYLVISG 85 (378)
Q Consensus 75 LkPGG~lvis~ 85 (378)
|+|||+|+++.
T Consensus 101 L~pgG~lvi~~ 111 (112)
T PF12847_consen 101 LKPGGRLVINT 111 (112)
T ss_dssp EEEEEEEEEEE
T ss_pred cCCCcEEEEEE
Confidence 99999999975
No 72
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.01 E-value=6.4e-06 Score=76.58 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=62.3
Q ss_pred CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCC-CCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEE
Q 017068 4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL-PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV 82 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~L-Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lv 82 (378)
++|.+..+. ++++.+..|.+||+++.-..++. .| .|||+|||.|++++++.+..+++ .+|+||.|| |...+
T Consensus 35 k~v~g~GvE---id~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~VIlsqtLQ~~~~P~-~vL~EmlRV---gr~~I 106 (193)
T PF07021_consen 35 KQVDGYGVE---IDPDNVAACVARGVSVIQGDLDE-GLADFPDQSFDYVILSQTLQAVRRPD-EVLEEMLRV---GRRAI 106 (193)
T ss_pred cCCeEEEEe---cCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCccEEehHhHHHhHhHHH-HHHHHHHHh---cCeEE
Confidence 455555554 67888999999999876544443 45 49999999999999999998888 999999998 77889
Q ss_pred EEcCCC
Q 017068 83 ISGPPV 88 (378)
Q Consensus 83 is~pp~ 88 (378)
+|.|++
T Consensus 107 VsFPNF 112 (193)
T PF07021_consen 107 VSFPNF 112 (193)
T ss_pred EEecCh
Confidence 998854
No 73
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.01 E-value=3e-06 Score=78.93 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=60.0
Q ss_pred eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc--cccc-ccccccCCCCCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL--IGVY-HDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~-~~w~~~f~typrtyDliH~~~ 294 (378)
.+|||+|||+|.++..|.+. .. +|+-.|.+ .++..+-++ ++ +-.+ .|- +.++.-+.+||+|+++.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEG---HVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA-MELPFDDNSFDYVTIGF 122 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEEEech-hcCCCCCCCccEEEEec
Confidence 47999999999999888643 23 33444443 555444332 22 1112 222 22332237999999987
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
.+.... +...+|-|+-|+|+|||.+++.+
T Consensus 123 ~l~~~~---------~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 123 GLRNVP---------DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred ccccCC---------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 665432 23568889999999999999875
No 74
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.01 E-value=4.7e-06 Score=81.38 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=72.4
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc----cccccccccC-CCCCCccccccccCccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI----GVYHDWCEPF-STYPRTYDLIHVSGIESLI 299 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli----g~~~~w~~~f-~typrtyDliH~~~~~~~~ 299 (378)
.+|||+|||+|.++.++...+. -.|...|.+ ..++.+.++.-. ......+... +..+..||+|+|.-+...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~- 237 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV- 237 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH-
Confidence 6899999999998877665432 145666655 666655554321 1111112111 222468999998644332
Q ss_pred cCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHHHHhcCCceEEEe
Q 017068 300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVH 354 (378)
Q Consensus 300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~~~~~l~W~~~~~ 354 (378)
+..++-++-|+|+|||++++++-. +..+++.+.+++- |+....
T Consensus 238 -----------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 238 -----------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred -----------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 246788999999999999999753 4556666666665 776543
No 75
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.00 E-value=1.7e-05 Score=73.29 Aligned_cols=77 Identities=29% Similarity=0.346 Sum_probs=61.6
Q ss_pred CCeEEEecCCCCChHHHHHHHHHcC------CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068 4 ENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP 77 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~erg------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP 77 (378)
..++++++ ++.+++.|+++. .++.+..+++..+++++++||+|+++.+++|+.+.. ..+.++.++|+|
T Consensus 77 ~~v~~~D~-----s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~-~~l~~~~~~L~~ 150 (239)
T PRK00216 77 GEVVGLDF-----SEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDID-KALREMYRVLKP 150 (239)
T ss_pred CeEEEEeC-----CHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHH-HHHHHHHHhccC
Confidence 34555555 457888887752 245677888888999999999999999998888777 899999999999
Q ss_pred CcEEEEEcC
Q 017068 78 GGYLVISGP 86 (378)
Q Consensus 78 GG~lvis~p 86 (378)
||++++...
T Consensus 151 gG~li~~~~ 159 (239)
T PRK00216 151 GGRLVILEF 159 (239)
T ss_pred CcEEEEEEe
Confidence 999988654
No 76
>PRK06202 hypothetical protein; Provisional
Probab=98.00 E-value=1.1e-05 Score=75.76 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=56.3
Q ss_pred cCCCCChHHHHHHHHHcC--CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEc
Q 017068 11 FAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 11 ~ap~D~se~~vq~A~erg--~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~ 85 (378)
+...|.|+.|++.|+++. ..+.+.++++..+++++++||+|+|+.+++|+.+++ ..+++|+.|++| |.+++..
T Consensus 91 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 91 VTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred EEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 334455679999998873 234566677778888999999999999999998754 479999999998 5555544
No 77
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.00 E-value=3.2e-06 Score=77.38 Aligned_cols=129 Identities=14% Similarity=0.206 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccC--CCeeEEEeccCCCC-cchHHH----Hhhcc--cccc
Q 017068 203 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLSVI----YDRGL--IGVY 273 (378)
Q Consensus 203 ~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~-~~l~~i----~eRGl--ig~~ 273 (378)
..|++.+-.=...+ ..+. + .+|||+|||+|.++..|.. ... .|+-.|.+ .++.++ -+.|+ +-+.
T Consensus 25 ~~~~~~~~d~i~~~-~~~~-~--~~vLDiGcGtG~~s~~la~~~~~~---~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i 97 (181)
T TIGR00138 25 EIWERHILDSLKLL-EYLD-G--KKVIDIGSGAGFPGIPLAIARPEL---KLTLLESNHKKVAFLREVKAELGLNNVEIV 97 (181)
T ss_pred HHHHHHHHHHHHHH-HhcC-C--CeEEEecCCCCccHHHHHHHCCCC---eEEEEeCcHHHHHHHHHHHHHhCCCCeEEE
Confidence 45666654332222 2233 2 5899999999998876642 222 34556655 444433 23354 2212
Q ss_pred -ccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCC-ceE
Q 017068 274 -HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVR-WTA 351 (378)
Q Consensus 274 -~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~-W~~ 351 (378)
.|..+ ++ ...+||+|-|.. +. .+..++-++.|+|+|||.+++........++..+.+++| |..
T Consensus 98 ~~d~~~-~~-~~~~fD~I~s~~-~~------------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~ 162 (181)
T TIGR00138 98 NGRAED-FQ-HEEQFDVITSRA-LA------------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGV 162 (181)
T ss_pred ecchhh-cc-ccCCccEEEehh-hh------------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCc
Confidence 22222 22 357999998754 22 235677788999999999999987777777777766644 444
Q ss_pred EE
Q 017068 352 AV 353 (378)
Q Consensus 352 ~~ 353 (378)
..
T Consensus 163 ~~ 164 (181)
T TIGR00138 163 EP 164 (181)
T ss_pred eE
Confidence 43
No 78
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.00 E-value=2.7e-06 Score=84.68 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=59.7
Q ss_pred eEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchH-H-HHhhcc-----ccccccccccCCCCCCccccccccCcc
Q 017068 226 RNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLS-V-IYDRGL-----IGVYHDWCEPFSTYPRTYDLIHVSGIE 296 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~-~-i~eRGl-----ig~~~~w~~~f~typrtyDliH~~~~~ 296 (378)
+.|||+|||.|.|+..|+... -. |+-.|.+ .++. . +..+.+ +-+...=-+.+|. +.+||+|+|.+++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~---V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKL---VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCE---EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 689999999999998887643 22 3444433 2221 1 111111 1111111123444 7899999998887
Q ss_pred ccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
.+.. +...+|-++-|+|+|||.+|+.
T Consensus 200 ~H~~---------dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 200 YHRR---------SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hccC---------CHHHHHHHHHHhcCCCcEEEEE
Confidence 6432 3467899999999999999986
No 79
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.99 E-value=3e-06 Score=86.29 Aligned_cols=93 Identities=19% Similarity=0.298 Sum_probs=66.0
Q ss_pred eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhc--c-c-cccccccccCCCCCCccccccccCccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRG--L-I-GVYHDWCEPFSTYPRTYDLIHVSGIESLI 299 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRG--l-i-g~~~~w~~~f~typrtyDliH~~~~~~~~ 299 (378)
..|||+|||.|+++..+... +. .|+-.|.+ .++..+-+|. + + -...|+. ..+.+||.|.+..+|...
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~----~l~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDYR----DLNGQFDRIVSVGMFEHV 241 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECchh----hcCCCCCEEEEeCchhhC
Confidence 47999999999999888754 44 55666655 8887777654 2 1 1122332 225789999998877643
Q ss_pred cCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
. .-+...++-++.|+|+|||++++..
T Consensus 242 g-------~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 242 G-------PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred C-------hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 1 2234678999999999999999963
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=97.97 E-value=6.3e-06 Score=73.60 Aligned_cols=140 Identities=17% Similarity=0.174 Sum_probs=84.6
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh---------hccccccccccccCCCCCCccccccccCc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD---------RGLIGVYHDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e---------RGlig~~~~w~~~f~typrtyDliH~~~~ 295 (378)
..|||+|||.|.++..|..++. +|.-.|.+ .++..+.+ ||+.-..+|+.+.++. .+||+|-++.-
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~p 99 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNPP 99 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECCC
Confidence 4799999999999999987754 66666655 56655522 2233345666665532 48999977654
Q ss_pred cccccCCC-------------CCCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCCceEEEecCCCCCC
Q 017068 296 ESLIKNPG-------------SNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAVHDKEPGSN 361 (378)
Q Consensus 296 ~~~~~~~~-------------~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~W~~~~~~~~~~~~ 361 (378)
+.... +. .......+..++-++.|+|+|||.+++-- .....+++.+++...-|+......+.-..
T Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 178 (188)
T PRK14968 100 YLPTE-EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPF 178 (188)
T ss_pred cCCCC-chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccCC
Confidence 43210 00 00001224567899999999999987653 23345667777777788765432222233
Q ss_pred CCeEEEEEEe
Q 017068 362 GREKILVATK 371 (378)
Q Consensus 362 ~~e~~l~~~K 371 (378)
+.-.++..+|
T Consensus 179 ~~~~~~~~~~ 188 (188)
T PRK14968 179 EELIVLELVK 188 (188)
T ss_pred ceEEEEEEeC
Confidence 3444555443
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.94 E-value=7.4e-06 Score=78.26 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=71.9
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCCCccccccccCccccccCCCC
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGS 304 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~ 304 (378)
..|||+|||+|..+.++.....- .|+..|.+ ..+..+-++.-.....+..+ ++.-..+||+|.|+-....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~-~~~~~~~fD~Vvani~~~~------ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVY-LPQGDLKADVIVANILANP------ 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEE-EccCCCCcCEEEEcCcHHH------
Confidence 57999999999888777655331 24556654 66665554422111111110 1111127999998533221
Q ss_pred CCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHHHHhcCCceEEEec
Q 017068 305 NKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHD 355 (378)
Q Consensus 305 ~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~~~~~l~W~~~~~~ 355 (378)
+..++-++-|+|+|||++|+++.. +..+.+.+.++..-++.....
T Consensus 192 ------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 192 ------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEE
Confidence 245777999999999999999753 456677777888888876543
No 82
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.94 E-value=1.5e-05 Score=77.71 Aligned_cols=74 Identities=11% Similarity=0.236 Sum_probs=54.7
Q ss_pred CeEEEecCCCCChHHHHHHHHH----cCCCeEEEEcccCCCCCCCCceeEEEecCccccccCC-hHHHHHHHhhcccCCc
Q 017068 5 NILTLSFAPRDSHKAQIQFALE----RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGG 79 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~e----rg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLkPGG 79 (378)
.|++++++ +.+++.|++ .++++.+...|....++ +++||+|+|..+++|.... ...+++++.|+|||||
T Consensus 144 ~V~avD~s-----~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG 217 (287)
T PRK12335 144 DVTAVDIN-----QQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGG 217 (287)
T ss_pred EEEEEECC-----HHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCc
Confidence 45555554 577776654 46666677777766666 7899999999988776533 2589999999999999
Q ss_pred EEEEE
Q 017068 80 YLVIS 84 (378)
Q Consensus 80 ~lvis 84 (378)
++++.
T Consensus 218 ~~l~v 222 (287)
T PRK12335 218 YNLIV 222 (287)
T ss_pred EEEEE
Confidence 97653
No 83
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.94 E-value=5.2e-06 Score=78.25 Aligned_cols=95 Identities=12% Similarity=0.211 Sum_probs=63.1
Q ss_pred eEEEecCCcceeeeeeccCC----CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHV 292 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~----~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~ 292 (378)
..|||+|||.|.++..|..+ +. +++-.|.+ .++..+-++ +. +- +..|.++ ++ + ..+|++.+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~---~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~ 128 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVIL 128 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC---eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEee
Confidence 47999999999998877653 33 45666655 677665443 21 11 2223332 22 1 35899998
Q ss_pred cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068 293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 333 (378)
Q Consensus 293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~ 333 (378)
...+..+. . -....+|-|+.|+|+|||.+++.|.
T Consensus 129 ~~~l~~~~------~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 129 NFTLQFLP------P-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ecchhhCC------H-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 88776553 1 1135789999999999999999974
No 84
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.93 E-value=2.1e-06 Score=81.89 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=97.2
Q ss_pred cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc-cccccccccCC--CCCCccccccccCc
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GVYHDWCEPFS--TYPRTYDLIHVSGI 295 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~~~~w~~~f~--typrtyDliH~~~~ 295 (378)
.+.|..|.++|+|||+|-+|-+|.+..- -+.=+|-+ |+|..+.|+|+- ..+|-=-..|. .-+.-||||.+..+
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 4556799999999999999999987643 33556767 999999999992 12221111143 45688999999999
Q ss_pred cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----------------HHHHHHHHHHhcCCceEEEe-----
Q 017068 296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAAVH----- 354 (378)
Q Consensus 296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------------~~~~~~~~~~~~l~W~~~~~----- 354 (378)
|.++- +++.++.=..+.|.|||.|+++-.. .--..|....++---++..+
T Consensus 198 l~YlG---------~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tti 268 (287)
T COG4976 198 LPYLG---------ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTI 268 (287)
T ss_pred HHhhc---------chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccc
Confidence 99763 5788999999999999999998310 11234555555555555432
Q ss_pred cCCCCCCCCeEEEEEEec
Q 017068 355 DKEPGSNGREKILVATKS 372 (378)
Q Consensus 355 ~~~~~~~~~e~~l~~~K~ 372 (378)
-.+.|.-....+.|++|+
T Consensus 269 R~d~g~pv~G~L~iark~ 286 (287)
T COG4976 269 RRDAGEPVPGILVIARKK 286 (287)
T ss_pred hhhcCCCCCCceEEEecC
Confidence 223333344567777764
No 85
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.93 E-value=1.7e-06 Score=80.72 Aligned_cols=111 Identities=18% Similarity=0.248 Sum_probs=71.3
Q ss_pred HHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcccccccccccc-CCC-C-CCcc
Q 017068 212 YKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEP-FST-Y-PRTY 287 (378)
Q Consensus 212 Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~-f~t-y-prty 287 (378)
|-..|.-.+..+++++++++|||-|-|.+.|..+-- .++..|.+ .-|..+-+|--=--.-+|... +|. . +.+|
T Consensus 31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~F 107 (201)
T PF05401_consen 31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRF 107 (201)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-E
T ss_pred HHHHHHHhcCccccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCe
Confidence 333333237889999999999999999999987743 45566655 566666555331011122221 111 1 3899
Q ss_pred ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
||||++-++-++. +.-.+..++-.+...|+|||.+|+-
T Consensus 108 DLIV~SEVlYYL~------~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 108 DLIVLSEVLYYLD------DAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp EEEEEES-GGGSS------SHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEEehHhHcCC------CHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999999998886 3344556788888999999999995
No 86
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.90 E-value=7.5e-07 Score=72.20 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=48.7
Q ss_pred EecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc--ccc-cccccCCCCC-CccccccccCccccc
Q 017068 229 MDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG--VYH-DWCEPFSTYP-RTYDLIHVSGIESLI 299 (378)
Q Consensus 229 lDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~-~w~~~f~typ-rtyDliH~~~~~~~~ 299 (378)
||+|||+|.++..|+++- -...++-.|.+ .++..+.+| +... ... +-.+.+...+ .+||+|.+..++..+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998772 22255666655 666333333 2110 111 1111123333 599999999999876
Q ss_pred cCCCCCCCCCCccceeeeecccccCCCeE
Q 017068 300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTV 328 (378)
Q Consensus 300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ 328 (378)
. .+..+|-.+-|+|+|||.+
T Consensus 80 ~---------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E---------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----------HHHHHHHHTTT-TSS-EE
T ss_pred h---------hHHHHHHHHHHHcCCCCCC
Confidence 3 4568999999999999985
No 87
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.90 E-value=8e-06 Score=81.25 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=59.5
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchH-HHHhhcc------ccccccccccCCCCCCccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLS-VIYDRGL------IGVYHDWCEPFSTYPRTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~-~i~eRGl------ig~~~~w~~~f~typrtyDliH~~~~~~ 297 (378)
+.|||+|||+|.++..++....- .|+-.|.+ .++. +-.-|-+ +....-=-+.++. +.+||+|-|.+++.
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhh
Confidence 68999999999998887765431 23444544 3332 1111111 1111100122332 35899999998887
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
++. +...+|-|+-|+|||||.+|+.
T Consensus 200 H~~---------dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 200 HRK---------SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ccC---------CHHHHHHHHHHhcCCCCEEEEE
Confidence 543 4468999999999999999986
No 88
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.89 E-value=3.9e-05 Score=73.18 Aligned_cols=141 Identities=19% Similarity=0.310 Sum_probs=80.3
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh---cc---cc-ccccccccCCCCCCccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR---GL---IG-VYHDWCEPFSTYPRTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR---Gl---ig-~~~~w~~~f~typrtyDliH~~~~~~ 297 (378)
.+|||+|||.|.++.+|....- ...++-.|.+ ..+..+-++ +. +- +..|+.++++ +.+||+|.++--+.
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~ 186 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYI 186 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCcC
Confidence 4699999999999988875420 1145666655 555554443 22 11 2234444332 37899998864332
Q ss_pred cccC-----CCCCCCC------------CCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCCCC
Q 017068 298 LIKN-----PGSNKNS------------CSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 360 (378)
Q Consensus 298 ~~~~-----~~~~~~~------------c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~~~ 360 (378)
.... ++..... -.+..++-++-++|+|||++++.-....-..+++++++..+.......+ -
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d--~ 264 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD--L 264 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC--C
Confidence 1100 0000000 0013466677799999999999644444456777776666653222122 2
Q ss_pred CCCeEEEEEEe
Q 017068 361 NGREKILVATK 371 (378)
Q Consensus 361 ~~~e~~l~~~K 371 (378)
.+.+++++++|
T Consensus 265 ~~~~r~~~~~~ 275 (275)
T PRK09328 265 AGRDRVVLGRR 275 (275)
T ss_pred CCCceEEEEEC
Confidence 36788998865
No 89
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.87 E-value=5.2e-06 Score=75.57 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=69.1
Q ss_pred eEEEecCCcceeeeeeccCC-----CeeEEEeccCCCCcchHHHHhhccccccccccccC------CCC-CCcccccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPF------STY-PRTYDLIHVS 293 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~f------~ty-prtyDliH~~ 293 (378)
.+|||+|||+|+++..+..+ .|+. .|-..+.. ..++--+..|..+.. ..+ +.+||+|-++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~-----vDis~~~~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIA-----VDLQPMKP---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEE-----Eecccccc---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 48999999999998776532 1433 23221110 012221223443321 012 3689999886
Q ss_pred Ccc--ccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CH----HHHHHHHHHHhcCCceEEEe-cCCCCCCCCeE
Q 017068 294 GIE--SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SP----EVIDKVSRIANTVRWTAAVH-DKEPGSNGREK 365 (378)
Q Consensus 294 ~~~--~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~----~~~~~~~~~~~~l~W~~~~~-~~~~~~~~~e~ 365 (378)
... +...+.......+.++.+|-++-|+|+|||.+++.. .. +++..+++ .+ |.+... |.-....+.|+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~~~ 181 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSAEV 181 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccceE
Confidence 431 111000000011223578899999999999999942 22 33333333 22 444442 22223346799
Q ss_pred EEEEE
Q 017068 366 ILVAT 370 (378)
Q Consensus 366 ~l~~~ 370 (378)
++||.
T Consensus 182 ~~~~~ 186 (188)
T TIGR00438 182 YIVAK 186 (188)
T ss_pred EEEEe
Confidence 99996
No 90
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.85 E-value=2.9e-05 Score=72.56 Aligned_cols=71 Identities=23% Similarity=0.170 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHcC---CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcEEEEEcC
Q 017068 15 DSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 15 D~se~~vq~A~erg---~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~lvis~p 86 (378)
|+|+..|+.|++|- ..+.+.+++... ..|++.||+|+++.+++++.+.+ ..++..+...|+|||.+++...
T Consensus 72 Dis~~Al~~Ar~Rl~~~~~V~~~~~dvp~-~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 72 DISPRALARARERLAGLPHVEWIQADVPE-FWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eCCHHHHHHHHHhcCCCCCeEEEECcCCC-CCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 45579999999983 236778877644 46899999999999999887632 4788999999999999999754
No 91
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.80 E-value=4.3e-06 Score=79.66 Aligned_cols=96 Identities=9% Similarity=0.182 Sum_probs=62.9
Q ss_pred eEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHHhh----cc---ccccccccccCCCCCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDR----GL---IGVYHDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~~w~~~f~typrtyDliH~~~ 294 (378)
..|||+|||+|.++..|.. .+-+ .|+-.|.+ .++..+-+| |+ +-++..-.+.++ + ..||+|-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I-ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-C-CCCCEEehhh
Confidence 4699999999999877754 2221 56677765 777766554 22 222211112222 1 3589998877
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
++..+. ......++-||-|+|+|||.+++.|
T Consensus 134 ~l~~l~-------~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLE-------PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCC-------HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 766543 1123579999999999999999986
No 92
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.80 E-value=2.9e-06 Score=79.30 Aligned_cols=135 Identities=15% Similarity=0.183 Sum_probs=69.8
Q ss_pred eEEEecCCcceeeeeeccCC---CeeEEEeccCCCCcchHHHHhhcccccccccccc---------CCCCCCcccccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEP---------FSTYPRTYDLIHVS 293 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~---------f~typrtyDliH~~ 293 (378)
.+|||+|||+|+|+..|.++ .--| +..|-..+.++ .|+.-+..|.... +. +.+||+|.|+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V---~aVDi~~~~~~---~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~S~ 124 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRV---IACDILPMDPI---VGVDFLQGDFRDELVLKALLERVG--DSKVQVVMSD 124 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceE---EEEecccccCC---CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEecC
Confidence 47999999999998777543 1222 22222111110 1222222333321 22 3689999986
Q ss_pred CccccccCCCC--CCCCCCccceeeeecccccCCCeEEEeC-----CHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEE
Q 017068 294 GIESLIKNPGS--NKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKI 366 (378)
Q Consensus 294 ~~~~~~~~~~~--~~~~c~~~~~l~EmDRiLRPgG~~ii~d-----~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~ 366 (378)
-......++.. +..-+.++.+|-|+-|+|+|||.+++-. ..+.+..+++..++...-. +...-..+.|.+
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~K---p~ssr~~s~e~~ 201 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRK---PDSSRARSREVY 201 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEEC---CccccccCceeE
Confidence 43221110000 0000012468899999999999999942 1334444444333333322 222222467999
Q ss_pred EEEEe
Q 017068 367 LVATK 371 (378)
Q Consensus 367 l~~~K 371 (378)
++|..
T Consensus 202 ~~~~~ 206 (209)
T PRK11188 202 IVATG 206 (209)
T ss_pred EEeec
Confidence 99974
No 93
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.77 E-value=0.00044 Score=73.02 Aligned_cols=124 Identities=8% Similarity=0.072 Sum_probs=72.0
Q ss_pred CCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-----cchHHHHhhcccc--ccc-cccccCCCCC-Ccccccc
Q 017068 223 PAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-----STLSVIYDRGLIG--VYH-DWCEPFSTYP-RTYDLIH 291 (378)
Q Consensus 223 ~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-----~~l~~i~eRGlig--~~~-~w~~~f~typ-rtyDliH 291 (378)
..-..++|+|||.|.|.+.+... +. |++-.+-. ..+..+.++||-. ++. +...-..-+| .+.|-||
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~---~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDA---LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCC---CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 34689999999999999998743 34 33333322 3345566777621 111 2211112233 7888887
Q ss_pred ccCcc-ccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHH-HhcCCceE
Q 017068 292 VSGIE-SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRI-ANTVRWTA 351 (378)
Q Consensus 292 ~~~~~-~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~-~~~l~W~~ 351 (378)
.. | ..|--....+.|=-=...|-++-|+|+|||.+.+. |..++.+.+.+. -+.-+++.
T Consensus 423 i~--FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 423 IL--FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEI 483 (506)
T ss_pred EE--CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEe
Confidence 63 4 24421122233333357889999999999999776 556666665444 33334543
No 94
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.76 E-value=5e-05 Score=70.40 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=57.0
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEccc-CCCC--CCCCceeEEEecCccccccCC--------hHHHH
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGT-RRLP--FPAFSFDIVHCSRCLIPFTAY--------NATYL 68 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~da-e~LP--fpd~SFD~V~cs~~l~hw~~~--------~~~~L 68 (378)
.|+++++. +.+++.|+++ +. ++.+..+|+ +.++ +++++||+|++.++. +|... ...++
T Consensus 66 ~v~gVD~s-----~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~-p~~~~~~~~~~~~~~~~l 139 (202)
T PRK00121 66 NFIGIEVH-----EPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPD-PWPKKRHHKRRLVQPEFL 139 (202)
T ss_pred cEEEEEec-----hHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCC-CCCCccccccccCCHHHH
Confidence 46666666 4777777653 33 467788888 7887 889999999987654 34221 13789
Q ss_pred HHHhhcccCCcEEEEEcC
Q 017068 69 IEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 69 ~Ev~RVLkPGG~lvis~p 86 (378)
+++.|+|||||+|+++.+
T Consensus 140 ~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 140 ALYARKLKPGGEIHFATD 157 (202)
T ss_pred HHHHHHcCCCCEEEEEcC
Confidence 999999999999999875
No 95
>PTZ00146 fibrillarin; Provisional
Probab=97.71 E-value=3.9e-05 Score=75.74 Aligned_cols=99 Identities=10% Similarity=0.141 Sum_probs=61.7
Q ss_pred cCCCCeeEEEecCCcceeeeeeccCC-----CeeEEEeccCCCCcchHHHHhh-ccccccccccccC--CCCCCcccccc
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDR-GLIGVYHDWCEPF--STYPRTYDLIH 291 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~~-----~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~w~~~f--~typrtyDliH 291 (378)
|+.| -+|||+|||+|+|+..|.+. .|..+-+.|.-..+.+.++-+| .++.+..|-+.+. .....++|+|-
T Consensus 130 IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 130 IKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred cCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEE
Confidence 5555 37999999999999888754 2443333221111355555554 5666777766542 11124789886
Q ss_pred ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
++-.. . + ....+++|+.|+|+|||+++|.
T Consensus 208 ~Dva~-p--------d--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 208 ADVAQ-P--------D--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EeCCC-c--------c--hHHHHHHHHHHhccCCCEEEEE
Confidence 65321 1 1 1235677999999999999994
No 96
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.71 E-value=2.1e-05 Score=71.88 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=61.1
Q ss_pred eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc----cc-ccccccccCCCCCCccccccccCcccc
Q 017068 225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL----IG-VYHDWCEPFSTYPRTYDLIHVSGIESL 298 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl----ig-~~~~w~~~f~typrtyDliH~~~~~~~ 298 (378)
=.+|||+|||.|.++.++...--=.-.++-.|.. ..+..+-++.- +- ...|-.+ ++..+.+||+|++...+..
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeCC
Confidence 4589999999999988876432100133444443 55555555431 11 1122222 2222368999999766653
Q ss_pred ccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
. .....++-++.++|+|||++++.+
T Consensus 119 ~---------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 119 V---------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred c---------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 235678999999999999999864
No 97
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.70 E-value=7.9e-06 Score=78.33 Aligned_cols=115 Identities=18% Similarity=0.076 Sum_probs=81.1
Q ss_pred CCCeeEEEecCCcceeeeeecc-CCCeeEEEeccCCCC-cchHHHHhhcccccccccc--------ccCCCCCCcccccc
Q 017068 222 TPAIRNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWC--------EPFSTYPRTYDLIH 291 (378)
Q Consensus 222 ~~~iR~vlDm~ag~g~faa~L~-~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~--------~~f~typrtyDliH 291 (378)
..+-|.+.|+|||.| +||..+ ++.- +|+.+|.+ .||+++ ..+.-=+||+-- +.|.--+.|.|||-
T Consensus 31 ~~~h~~a~DvG~G~G-qa~~~iae~~k---~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~ 105 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNG-QAARGIAEHYK---EVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT 105 (261)
T ss_pred CCCcceEEEeccCCC-cchHHHHHhhh---hheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeeeh
Confidence 345679999999999 777664 5555 67999987 999844 444433444433 33444479999999
Q ss_pred ccCccccccCCCCCCCCCCccceeeeecccccCCC-eE---EEeCCHHHHHHHHHHHhcCCceE
Q 017068 292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEG-TV---VVRDSPEVIDKVSRIANTVRWTA 351 (378)
Q Consensus 292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG-~~---ii~d~~~~~~~~~~~~~~l~W~~ 351 (378)
|..|+.- |+++..+-|+-|||||.| .+ ..+|..-.+.++..+..+++|+.
T Consensus 106 ~Aqa~HW----------Fdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~ 159 (261)
T KOG3010|consen 106 AAQAVHW----------FDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDST 159 (261)
T ss_pred hhhhHHh----------hchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhcc
Confidence 9999872 567899999999999999 32 22444445666666777777753
No 98
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.69 E-value=2.4e-05 Score=72.22 Aligned_cols=124 Identities=14% Similarity=0.144 Sum_probs=72.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--
Q 017068 197 VFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-- 269 (378)
Q Consensus 197 ~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-- 269 (378)
.|....+.=..++....+.+...-....--+|||+|||.|.++..+..... .++-.|.+ ..+..+-++ |+
T Consensus 18 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~ 94 (224)
T TIGR01983 18 KFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLK 94 (224)
T ss_pred cHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 355555554445544444333110011234799999999999888765543 24444544 444444332 22
Q ss_pred cccc-ccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 270 IGVY-HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 270 ig~~-~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
+-.. .+..+-....+.+||+|.+..++.... +...+|-++.|+|+|||++++..
T Consensus 95 ~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~---------~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 95 IEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVP---------DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred eEEEeCCHHHhhcCCCCCccEEEehhHHHhCC---------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 1111 111111112257899999988776443 34678999999999999999875
No 99
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.68 E-value=7.3e-05 Score=76.20 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHcC--CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068 14 RDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 14 ~D~se~~vq~A~erg--~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.|+|+.|++.|+++. ..+.+...|...+ +++||.|++..+++|..... ..+++++.|+|||||++++...
T Consensus 196 iDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 196 VTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 355579999999873 4455666676554 57999999999888875532 4899999999999999999754
No 100
>PRK04266 fibrillarin; Provisional
Probab=97.68 E-value=5.7e-05 Score=71.76 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=73.2
Q ss_pred cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-----ccccccccccccC--CCCCCcccccc
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-----GLIGVYHDWCEPF--STYPRTYDLIH 291 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~w~~~f--~typrtyDliH 291 (378)
+..|. .|||+|||+|+++..|.+.-- .=.|...|.+ .+|..+.++ .+.-+..|-.++. ...+.+||.|-
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence 45553 699999999999988876410 0024555654 555533322 2233344444321 12245688865
Q ss_pred ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE------eCC----HHHHHHHHHHHhcCCceEE-EecCCCCC
Q 017068 292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV------RDS----PEVIDKVSRIANTVRWTAA-VHDKEPGS 360 (378)
Q Consensus 292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii------~d~----~~~~~~~~~~~~~l~W~~~-~~~~~~~~ 360 (378)
++... . + ....+|-|+-|+|+|||.++| -|. ....++..+.+++-..+.. ..+....
T Consensus 147 ~d~~~-p--------~--~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~- 214 (226)
T PRK04266 147 QDVAQ-P--------N--QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPY- 214 (226)
T ss_pred ECCCC-h--------h--HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC-
Confidence 32110 0 0 012356799999999999999 331 2222233344554445543 2333221
Q ss_pred CCCeEEEEEEec
Q 017068 361 NGREKILVATKS 372 (378)
Q Consensus 361 ~~~e~~l~~~K~ 372 (378)
..++-.++++|+
T Consensus 215 ~~~h~~~v~~~~ 226 (226)
T PRK04266 215 HKDHAAVVARKK 226 (226)
T ss_pred cCCeEEEEEEcC
Confidence 235666777664
No 101
>PLN03075 nicotianamine synthase; Provisional
Probab=97.67 E-value=6.9e-05 Score=74.10 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHcC-----C--CeEEEEcccCCCCCCCCceeEEEecCcccccc-CChHHHHHHHhhcccCCcEEEEE
Q 017068 13 PRDSHKAQIQFALERG-----I--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 13 p~D~se~~vq~A~erg-----~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~-~~~~~~L~Ev~RVLkPGG~lvis 84 (378)
..|.++++++.|++.- + .+.|..+|+..++-..+.||+|+|. ++++|. ....++++++.|.|||||+|++.
T Consensus 154 giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 154 NFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 3455678888887742 2 3678888877654345789999998 899994 33359999999999999999987
Q ss_pred c
Q 017068 85 G 85 (378)
Q Consensus 85 ~ 85 (378)
.
T Consensus 233 ~ 233 (296)
T PLN03075 233 S 233 (296)
T ss_pred c
Confidence 5
No 102
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.65 E-value=7.9e-05 Score=69.56 Aligned_cols=72 Identities=21% Similarity=0.311 Sum_probs=56.9
Q ss_pred CCChHHHHHHHHHc----CCCeEEEEcccCCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 14 RDSHKAQIQFALER----GIPAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~~~~~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.|.++.+++.|+++ +..+.+...+...++ .+++.||+|+|+.++.|..+.. .+++++.++|+|||+++++.+
T Consensus 76 iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~-~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 76 IDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPA-SFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHH-HHHHHHHHHcCCCcEEEEEec
Confidence 35566778777764 444566666766665 4568999999999999888776 899999999999999999865
No 103
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.64 E-value=1.3e-05 Score=76.97 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=59.1
Q ss_pred eEEEecCCcceeeeeecc---CCCeeEEEeccCCCC-cchHHHHhh----cccc--c-cccccccCCCCCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKS-STLSVIYDR----GLIG--V-YHDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~---~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~-~~~w~~~f~typrtyDliH~~~ 294 (378)
.+|||+|||.|.++..+. .... .|+-.|.+ .++..+-++ |+-. . ..+. +.++..+.+||+|++..
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~---~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTG---KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNC 154 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcC
Confidence 499999999987543322 2222 34556654 667666554 3211 1 1222 22332237999999887
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
++.... +...++-|+-|+|||||.+++.+
T Consensus 155 v~~~~~---------d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 155 VINLSP---------DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cccCCC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 665432 23578999999999999999974
No 104
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.63 E-value=3.1e-05 Score=72.55 Aligned_cols=123 Identities=19% Similarity=0.264 Sum_probs=75.0
Q ss_pred eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh----hcc--cc-ccccccccCCCCCCccccccccCc
Q 017068 226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD----RGL--IG-VYHDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e----RGl--ig-~~~~w~~~f~typrtyDliH~~~~ 295 (378)
.+|||+|||.|.|+.++... .. +++-.|.. ..+..+-+ .|+ +- ...|+.+.++ +.+||+|.|+--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA---RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCC
Confidence 47999999999999999864 22 45555544 44443332 343 11 2224444332 378999998654
Q ss_pred cccccCCCCCCCCC-----------------CccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEE
Q 017068 296 ESLIKNPGSNKNSC-----------------SLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV 353 (378)
Q Consensus 296 ~~~~~~~~~~~~~c-----------------~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~ 353 (378)
|........-.... ....++-++-|+|+|||.+++.-......++++++++..++...
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVE 238 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceE
Confidence 44221000000000 01256778899999999999987666667788888877776543
No 105
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.61 E-value=0.00042 Score=65.91 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=107.2
Q ss_pred cCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCCCCC
Q 017068 11 FAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQW 90 (378)
Q Consensus 11 ~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp~~~ 90 (378)
|...|.|.+|++.|+++.+.+.|..+|.... -|+..+|+++++.+++-.+++. ..|.-+..-|.|||.+.+..|. |+
T Consensus 57 i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~dllfaNAvlqWlpdH~-~ll~rL~~~L~Pgg~LAVQmPd-N~ 133 (257)
T COG4106 57 ITGIDSSPAMLAKAAQRLPDATFEEADLRTW-KPEQPTDLLFANAVLQWLPDHP-ELLPRLVSQLAPGGVLAVQMPD-NL 133 (257)
T ss_pred EeeccCCHHHHHHHHHhCCCCceecccHhhc-CCCCccchhhhhhhhhhccccH-HHHHHHHHhhCCCceEEEECCC-cc
Confidence 4567888999999999999999988887554 4678899999887764445555 9999999999999999998872 22
Q ss_pred CccchHHHHHHHHHHHhceeeeccccceEEEeCCCCc-ccccccCCCCCCCCCCCCCCCcccccccccccccccCCC---
Q 017068 91 PKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGE-SCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVK--- 166 (378)
Q Consensus 91 ~~~~~~w~~l~~l~~~lcw~~~~~~~~~~iw~Kp~~~-~c~~~~~~~~~~~c~~~~~~~~~wy~~~~~Ci~~~p~~~--- 166 (378)
..+ ....|.++++..-|....... .+.+++... .-|-.. -.|--|. -..|.+- -.++++...
T Consensus 134 dep--sH~~mr~~A~~~p~~~~l~~~--~~~r~~v~s~a~Yy~l--La~~~~r-----vDiW~T~---Y~h~l~~a~aIv 199 (257)
T COG4106 134 DEP--SHRLMRETADEAPFAQELGGR--GLTRAPLPSPAAYYEL--LAPLACR-----VDIWHTT---YYHQLPGADAIV 199 (257)
T ss_pred Cch--hHHHHHHHHhcCchhhhhCcc--ccccCCCCCHHHHHHH--hCcccce-----eeeeeee---ccccCCCccchh
Confidence 211 134577788766665543322 224666653 333221 0112243 1234332 123344321
Q ss_pred cccccCCCCCCCccccCCCCcceecccCccccccchHHHHHHHHHHHHHhhh
Q 017068 167 GEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNV 218 (378)
Q Consensus 167 ~~~~~~~~~~WP~rl~~~p~~l~~~g~~~~~F~~d~~~w~~~v~~Y~~~~~~ 218 (378)
+++.+..+.||=++ -|.+.|++-.+.|...|..
T Consensus 200 dWvkgTgLrP~L~~-------------------L~e~~~~~FL~~Y~~~l~~ 232 (257)
T COG4106 200 DWVKGTGLRPYLDR-------------------LDEEERQRFLDRYLALLAE 232 (257)
T ss_pred hheeccccceeccc-------------------cCHHHHHHHHHHHHHHHHH
Confidence 12223233333222 2578899999999998873
No 106
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.61 E-value=9.5e-05 Score=69.83 Aligned_cols=52 Identities=25% Similarity=0.411 Sum_probs=36.2
Q ss_pred EEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 33 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 33 ~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
+.+.|..++|++|+++|+|++...|+ ..+....++|++|||||||.|.|+.-
T Consensus 108 Vtacdia~vPL~~~svDv~VfcLSLM--GTn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCLSLM--GTNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEecCccCcCCCCceeEEEEEhhhh--CCCcHHHHHHHHheeccCcEEEEEEe
Confidence 45678899999999999999866554 34445999999999999999999753
No 107
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.59 E-value=0.00011 Score=67.82 Aligned_cols=72 Identities=25% Similarity=0.327 Sum_probs=56.8
Q ss_pred CCChHHHHHHHHHc----CC-CeEEEEcccCCCCCC-CCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 14 RDSHKAQIQFALER----GI-PAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~-~~~~~v~dae~LPfp-d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.|.++.+++.|+++ +. .+.+...+++.++.+ .++||+|+|..+++|..+.. ..+.++.++|+|||+++++..
T Consensus 73 iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~-~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 73 IDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQ-AFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHH-HHHHHHHHhcCCCcEEEEEec
Confidence 34456777777664 34 466777787777765 48999999999998887776 899999999999999998765
No 108
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.56 E-value=0.00014 Score=70.71 Aligned_cols=52 Identities=31% Similarity=0.524 Sum_probs=42.9
Q ss_pred EEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 33 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 33 ~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
+.+.|..++|++|+|.|++++ ||.-...+-..+++|++|||||||.+.|+.-
T Consensus 214 V~~cDm~~vPl~d~svDvaV~--CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 214 VIACDMRNVPLEDESVDVAVF--CLSLMGTNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred eeeccccCCcCccCcccEEEe--eHhhhcccHHHHHHHHHHHhccCceEEEEeh
Confidence 456788899999999999987 5544455555899999999999999999754
No 109
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.56 E-value=0.00028 Score=65.18 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=62.8
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 79 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG 79 (378)
.|++++ .++.|++.|+++ +++ +.+..++++.++. +++||+|+|.. +.+.+ ..++++.|+|||||
T Consensus 71 ~V~giD-----~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~-~~l~~~~~~LkpGG 139 (187)
T PRK00107 71 KVTLVD-----SLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLS-DLVELCLPLLKPGG 139 (187)
T ss_pred eEEEEe-----CcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----ccCHH-HHHHHHHHhcCCCe
Confidence 455554 446777666653 443 6778888888887 78999999864 23334 88999999999999
Q ss_pred EEEEEcCCCCCCccchHHHHHHHHHHHhceeee
Q 017068 80 YLVISGPPVQWPKQDKEWADLQAVARALCYELI 112 (378)
Q Consensus 80 ~lvis~pp~~~~~~~~~w~~l~~l~~~lcw~~~ 112 (378)
+|++...+. .-.+++.+++.+.|...
T Consensus 140 ~lv~~~~~~-------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 140 RFLALKGRD-------PEEEIAELPKALGGKVE 165 (187)
T ss_pred EEEEEeCCC-------hHHHHHHHHHhcCceEe
Confidence 999875421 11346677777777643
No 110
>PRK06202 hypothetical protein; Provisional
Probab=97.53 E-value=5e-05 Score=71.26 Aligned_cols=103 Identities=12% Similarity=0.148 Sum_probs=66.9
Q ss_pred CCCCeeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhhcc-cc--ccccccccCCCCCCcccccccc
Q 017068 221 GTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDRGL-IG--VYHDWCEPFSTYPRTYDLIHVS 293 (378)
Q Consensus 221 ~~~~iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eRGl-ig--~~~~w~~~f~typrtyDliH~~ 293 (378)
....-.+|||+|||+|.++..|... .-...+|+..|.+ .++..+.++.- .+ ...-=.+.++.-+.+||+|-|+
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 3344568999999999988777531 1112367888876 88887776632 11 1111123344445899999999
Q ss_pred CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
.+|.+.. +. .+..+|-||-|++| |.+++.|
T Consensus 137 ~~lhh~~------d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLD------DA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCC------hH-HHHHHHHHHHHhcC--eeEEEec
Confidence 9887664 11 13468999999999 5666655
No 111
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.53 E-value=1.3e-05 Score=74.57 Aligned_cols=93 Identities=20% Similarity=0.279 Sum_probs=65.4
Q ss_pred EEEecCCcceeeeeeccCCCeeEEEeccCCCC-c---ch-HHHHhhccc--cccccccccCCCCCCccccccccCccccc
Q 017068 227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-S---TL-SVIYDRGLI--GVYHDWCEPFSTYPRTYDLIHVSGIESLI 299 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~---~l-~~i~eRGli--g~~~~w~~~f~typrtyDliH~~~~~~~~ 299 (378)
.+||+|||.|+-|-+|..++. .|...|.+ . .+ +++-+++|- ....|..+ + .+|..||+|.+..+|-.+
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~-~-~~~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLND-F-DFPEEYDFIVSTVVFMFL 107 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC-B-S-TTTEEEEEEESSGGGS
T ss_pred cEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchh-c-cccCCcCEEEEEEEeccC
Confidence 799999999999999999998 66666654 2 23 445557772 23344433 2 346899999998888776
Q ss_pred cCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
. +-.+..++--|..-++||||+++-
T Consensus 108 ~-------~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 108 Q-------RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp --------GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred C-------HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 4 445677888899999999999883
No 112
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.53 E-value=0.00027 Score=66.54 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=54.9
Q ss_pred CCeEEEecCCCCChHHHHHHH-HHcC----------------CCeEEEEcccCCCCCC-CCceeEEEecCccccccCCh-
Q 017068 4 ENILTLSFAPRDSHKAQIQFA-LERG----------------IPAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTAYN- 64 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A-~erg----------------~~~~~~v~dae~LPfp-d~SFD~V~cs~~l~hw~~~~- 64 (378)
.+|++++++| ..++.| .+++ ..+.+.++|...++.. .+.||.|+-..+++|++...
T Consensus 57 ~~V~gvD~S~-----~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R 131 (213)
T TIGR03840 57 HRVLGVELSE-----IAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMR 131 (213)
T ss_pred CeEEEEeCCH-----HHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHH
Confidence 3678887775 555553 3333 3466788888777643 46799999888889987654
Q ss_pred HHHHHHHhhcccCCcEEEE
Q 017068 65 ATYLIEVDRLLRPGGYLVI 83 (378)
Q Consensus 65 ~~~L~Ev~RVLkPGG~lvi 83 (378)
...++.+.++|||||++++
T Consensus 132 ~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 132 QRYAAHLLALLPPGARQLL 150 (213)
T ss_pred HHHHHHHHHHcCCCCeEEE
Confidence 5789999999999997554
No 113
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.52 E-value=2.6e-05 Score=78.44 Aligned_cols=116 Identities=11% Similarity=0.019 Sum_probs=74.5
Q ss_pred eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcc---ccccccccccCCCCCCccccccccCcccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~~~w~~~f~typrtyDliH~~~~~~~~~ 300 (378)
..|||+|||+|.++..+.+. +- -+|+-.|.+ +++..+-++.- +-+.+.=-+.++..+.+||+|-+...+..+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 47999999999988776542 11 145566655 77776666521 1111111122333347999999988777654
Q ss_pred CCCCCCCCCCccceeeeecccccCCCeEEEeCCH-----------------HHHHHHHHHHhcCCceEE
Q 017068 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-----------------EVIDKVSRIANTVRWTAA 352 (378)
Q Consensus 301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-----------------~~~~~~~~~~~~l~W~~~ 352 (378)
+...+|-|+-|+|+|||.+++.+.. ...+++.+++++.-++..
T Consensus 193 ---------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 193 ---------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred ---------CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 1246899999999999999886421 023556667777777654
No 114
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.52 E-value=0.00018 Score=66.16 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=55.2
Q ss_pred CCeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCC---CCCCceeEEEecCccccccCCh--------HHH
Q 017068 4 ENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP---FPAFSFDIVHCSRCLIPFTAYN--------ATY 67 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LP---fpd~SFD~V~cs~~l~hw~~~~--------~~~ 67 (378)
.+|+++++. +.+++.|+++ ++ .+.+..+|+..++ +++++||.|++.+. -+|+... ...
T Consensus 41 ~~v~gvD~~-----~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p-dpw~k~~h~~~r~~~~~~ 114 (194)
T TIGR00091 41 KNFLGIEIH-----TPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP-DPWPKKRHNKRRITQPHF 114 (194)
T ss_pred CCEEEEEee-----HHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC-CcCCCCCccccccCCHHH
Confidence 467777776 4666666543 34 4667788887654 67789999998654 3454321 268
Q ss_pred HHHHhhcccCCcEEEEEcC
Q 017068 68 LIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 68 L~Ev~RVLkPGG~lvis~p 86 (378)
++++.|+|||||.|++.+.
T Consensus 115 l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 115 LKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred HHHHHHHhCCCCEEEEEeC
Confidence 9999999999999998764
No 115
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.52 E-value=4e-05 Score=75.38 Aligned_cols=112 Identities=14% Similarity=0.204 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh------cc--ccccc
Q 017068 207 RRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR------GL--IGVYH 274 (378)
Q Consensus 207 ~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR------Gl--ig~~~ 274 (378)
.-.+.+.+.|...+..+ .+|||+|||+|.++..|++. +. ++++.|-+ .+|..+.++ ++ .++..
T Consensus 48 ~il~~~~~~ia~~~~~~--~~iLELGcGtG~~t~~Ll~~l~~~~---~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g 122 (301)
T TIGR03438 48 AILERHADEIAAATGAG--CELVELGSGSSRKTRLLLDALRQPA---RYVPIDISADALKESAAALAADYPQLEVHGICA 122 (301)
T ss_pred HHHHHHHHHHHHhhCCC--CeEEecCCCcchhHHHHHHhhccCC---eEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence 33444555555455544 47999999999999888765 44 78999987 888888765 22 24455
Q ss_pred cccccCCCCCCcc-----ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 275 DWCEPFSTYPRTY-----DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 275 ~w~~~f~typrty-----DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
|-++.++ ++..+ .++.++..|..+. .-....+|-++-+.|+|||.++|.
T Consensus 123 D~~~~~~-~~~~~~~~~~~~~~~gs~~~~~~-------~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 123 DFTQPLA-LPPEPAAGRRLGFFPGSTIGNFT-------PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cccchhh-hhcccccCCeEEEEecccccCCC-------HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 6555432 22222 2344444444432 222357899999999999999985
No 116
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.52 E-value=6.2e-05 Score=70.25 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=63.9
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cccc--ccccccccCCCCCCccccccccCcccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG--VYHDWCEPFSTYPRTYDLIHVSGIESL 298 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~~w~~~f~typrtyDliH~~~~~~~ 298 (378)
..|||+|||.|.++..+..... +++-.|.. ..+..+-++ |+.. ...+..+-....+.+||+|.++.++..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 3599999999999988877653 55666654 555554443 3311 112222211123368999999888775
Q ss_pred ccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
.. +...+|-++.|+|+|||.+++..
T Consensus 127 ~~---------~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 VP---------DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred cC---------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 43 23578899999999999999975
No 117
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.51 E-value=4.5e-05 Score=70.17 Aligned_cols=143 Identities=14% Similarity=0.202 Sum_probs=82.6
Q ss_pred ccCcccccc--chHHHHHHHHHHH-HHhhhhcCCCCeeEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHH
Q 017068 192 KNGYDVFEA--DSRRWRRRVAYYK-NTLNVKLGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVI 264 (378)
Q Consensus 192 g~~~~~F~~--d~~~w~~~v~~Y~-~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i 264 (378)
|+....|.. +...++..+..-. ..+. +..+ -.|+|+|||+|.|+..+.. ..- +|...|.+ ..++.+
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~~l~~l~--~~~~--~~vlDlG~GtG~~s~~~a~~~~~~~---~v~avD~~~~~~~~a 81 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRALALSKLR--LRKG--DMILDIGCGTGSVTVEASLLVGETG---KVYAVDKDEKAINLT 81 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHHHHHHcC--CCCc--CEEEEeCCcCCHHHHHHHHHhCCCC---EEEEEECCHHHHHHH
Confidence 444455654 3456777664321 1111 2333 3799999999999876532 222 44555654 555543
Q ss_pred Hhh----ccc---c-ccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHH
Q 017068 265 YDR----GLI---G-VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPE 335 (378)
Q Consensus 265 ~eR----Gli---g-~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~ 335 (378)
-++ |+. - +..|..+.++..+..||.|.+... ...+..++-++-|+|+|||.+++.- +.+
T Consensus 82 ~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (198)
T PRK00377 82 RRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG------------SEKLKEIISASWEIIKKGGRIVIDAILLE 149 (198)
T ss_pred HHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC------------cccHHHHHHHHHHHcCCCcEEEEEeecHH
Confidence 322 321 1 112333323333457898876421 1234678889999999999999843 456
Q ss_pred HHHHHHHHHhcCCceEEE
Q 017068 336 VIDKVSRIANTVRWTAAV 353 (378)
Q Consensus 336 ~~~~~~~~~~~l~W~~~~ 353 (378)
.+.++...++.+.++..+
T Consensus 150 ~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 150 TVNNALSALENIGFNLEI 167 (198)
T ss_pred HHHHHHHHHHHcCCCeEE
Confidence 677777777766665543
No 118
>PRK06922 hypothetical protein; Provisional
Probab=97.50 E-value=3.6e-05 Score=83.09 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=65.8
Q ss_pred eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhc----c-cccc-ccccccCCC-C-CCccccccccCc
Q 017068 226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRG----L-IGVY-HDWCEPFST-Y-PRTYDLIHVSGI 295 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRG----l-ig~~-~~w~~~f~t-y-prtyDliH~~~~ 295 (378)
.+|||+|||+|.++.+|... + -.+|+-.|-+ .+++.+-+|. . +-+. .| +..+|. + |.+||+|.++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gD-a~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGD-AINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcc-hHhCccccCCCCEEEEEEchH
Confidence 47999999999998777542 1 1266777766 6777665542 1 1111 12 222331 2 489999999876
Q ss_pred cccccC--C--CCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068 296 ESLIKN--P--GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 333 (378)
Q Consensus 296 ~~~~~~--~--~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~ 333 (378)
+..+-+ + +..-..-.+..+|-|+-|+|+|||.+++.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 653310 0 0000112456889999999999999999873
No 119
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.50 E-value=1.8e-05 Score=69.38 Aligned_cols=96 Identities=17% Similarity=0.306 Sum_probs=66.0
Q ss_pred eEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHHh----hccc--c-ccccccccCCC-CCCcccccccc
Q 017068 226 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYD----RGLI--G-VYHDWCEPFST-YPRTYDLIHVS 293 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~e----RGli--g-~~~~w~~~f~t-yprtyDliH~~ 293 (378)
-+|||+|||+|.++-.|.+ .+. .++-.|-+ .+++.+-+ .|+- - ...|..+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4799999999999988873 234 34555655 66766655 3552 1 2234444 332 45899999999
Q ss_pred CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH
Q 017068 294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 334 (378)
Q Consensus 294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~ 334 (378)
..+... .+...+|-+|=|.|+|||.+++.+..
T Consensus 81 ~~l~~~---------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF---------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT---------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc---------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888433 23457888999999999999999754
No 120
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.48 E-value=8.1e-05 Score=72.29 Aligned_cols=73 Identities=25% Similarity=0.280 Sum_probs=56.2
Q ss_pred ecCCCCChHHHHHHHHHcCC--C---------eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068 10 SFAPRDSHKAQIQFALERGI--P---------AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 78 (378)
Q Consensus 10 s~ap~D~se~~vq~A~erg~--~---------~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG 78 (378)
++...|.++.||+.|++... | ..+...+++.+- +.||+|+|+.+++|..++. ..+.-+-+.||||
T Consensus 113 ~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~-~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 113 QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQ-EFLNCLSALLKPN 188 (282)
T ss_pred eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHH-HHHHHHHHHhCCC
Confidence 45667788999999998621 1 112333444432 3399999999999998888 9999999999999
Q ss_pred cEEEEEcC
Q 017068 79 GYLVISGP 86 (378)
Q Consensus 79 G~lvis~p 86 (378)
|.+++++.
T Consensus 189 G~lfitti 196 (282)
T KOG1270|consen 189 GRLFITTI 196 (282)
T ss_pred CceEeeeh
Confidence 99999875
No 121
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.48 E-value=7.2e-05 Score=61.87 Aligned_cols=92 Identities=22% Similarity=0.278 Sum_probs=56.0
Q ss_pred eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHH----Hhhcccc--c-cccccccCCCCCCccccccccCcc
Q 017068 226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIG--V-YHDWCEPFSTYPRTYDLIHVSGIE 296 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig--~-~~~w~~~f~typrtyDliH~~~~~ 296 (378)
..|||+|||.|.++..+... +- .+|...|.+ ..+..+ .+.|+-. + ..+....++.-+.+||.|-+....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 48999999999999988754 21 245555544 444432 2223311 1 112111112223689998775433
Q ss_pred ccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
.. +..++-++-|.|+|||++++.
T Consensus 99 ~~------------~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 GL------------LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hh------------HHHHHHHHHHHcCCCCEEEEE
Confidence 21 247889999999999999985
No 122
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=1.9e-05 Score=71.39 Aligned_cols=52 Identities=31% Similarity=0.403 Sum_probs=46.2
Q ss_pred ccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcCCC
Q 017068 37 GTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGPPV 88 (378)
Q Consensus 37 dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~pp~ 88 (378)
.....+|.|+|.|+|.|.+++.|+.-.+ ..+++|.+|+|||||++-++.|..
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 3567899999999999999999998766 479999999999999999998843
No 123
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.47 E-value=0.00024 Score=73.36 Aligned_cols=142 Identities=12% Similarity=0.101 Sum_probs=84.8
Q ss_pred EEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc-cc-ccccccccCCCCCCccccccccCcccc
Q 017068 227 NIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYDLIHVSGIESL 298 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~w~~~f~typrtyDliH~~~~~~~ 298 (378)
+|||+|||+|.++.+|... +- .+|...|.+ ..++.+-++ |+ +- +..|+.+...+-...||+|-|+--+..
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 7999999999999887642 21 245666765 667655443 32 21 234555431111247999999754321
Q ss_pred ccCCCC--C-----------CCCCC---ccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCCCCCC
Q 017068 299 IKNPGS--N-----------KNSCS---LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNG 362 (378)
Q Consensus 299 ~~~~~~--~-----------~~~c~---~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~ 362 (378)
-..... + +..-. +..++-+.-+.|+|||++++--..+.-+.+++++++..|+......+ -.+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kD--l~G 409 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPD--LAG 409 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEc--CCC
Confidence 100000 0 00001 22555566788999999988655566778888888877865432222 136
Q ss_pred CeEEEEEEec
Q 017068 363 REKILVATKS 372 (378)
Q Consensus 363 ~e~~l~~~K~ 372 (378)
.++++++++.
T Consensus 410 ~dR~v~~~~~ 419 (423)
T PRK14966 410 LDRVTLGKYM 419 (423)
T ss_pred CcEEEEEEEh
Confidence 7999998753
No 124
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.46 E-value=0.00016 Score=66.18 Aligned_cols=66 Identities=27% Similarity=0.286 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHcCCCeEEEEcccCC-C-CCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 15 DSHKAQIQFALERGIPAFVAMLGTRR-L-PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 15 D~se~~vq~A~erg~~~~~~v~dae~-L-Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
|.++++++.|+++++. +..++++. + ++++++||+|+|+.+++|..++. .+++|+.|+++ ..+++.|
T Consensus 43 D~s~~~i~~a~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~-~~l~e~~r~~~---~~ii~~p 110 (194)
T TIGR02081 43 EIDQDGVLACVARGVN--VIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPE-EILDEMLRVGR---HAIVSFP 110 (194)
T ss_pred eCCHHHHHHHHHcCCe--EEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHH-HHHHHHHHhCC---eEEEEcC
Confidence 5667899999887754 45566654 5 58899999999999998887776 89999998865 4455554
No 125
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.46 E-value=7.7e-05 Score=68.82 Aligned_cols=94 Identities=21% Similarity=0.235 Sum_probs=59.4
Q ss_pred eEEEecCCcceeeeeeccCCC---eeEEEeccCCCC-cchHHHHhhc----c---cccc-ccccccCCCCCCcccccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDP---VWVMNVVPARKS-STLSVIYDRG----L---IGVY-HDWCEPFSTYPRTYDLIHVS 293 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~---vwvmnv~p~~~~-~~l~~i~eRG----l---ig~~-~~w~~~f~typrtyDliH~~ 293 (378)
..|||+|||.|.++..+...- . .++-.|.+ ..+..+-++- + +-+. .|..+ ++.-+.+||+|.++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~ 128 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTG---EVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIA 128 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCC---eEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEe
Confidence 479999999999987775432 2 34445544 4554443331 1 1111 22222 22223689999998
Q ss_pred CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
.++..+ .+...+|-++-++|+|||.+++.+
T Consensus 129 ~~l~~~---------~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 129 FGLRNV---------PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccccC---------CCHHHHHHHHHHhccCCcEEEEEE
Confidence 766533 345678899999999999998864
No 126
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.44 E-value=4.8e-05 Score=69.92 Aligned_cols=124 Identities=11% Similarity=0.169 Sum_probs=71.9
Q ss_pred eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHH----hhcccc---ccccccccC-CCCC-Cccccccc
Q 017068 225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIY----DRGLIG---VYHDWCEPF-STYP-RTYDLIHV 292 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~----eRGlig---~~~~w~~~f-~typ-rtyDliH~ 292 (378)
=+.+||+|||.|.|+.+|..+ .. ||+-.|.. ..+..+. +.|+-. +..|..+.. ..+| .++|.|+.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~---~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDK---NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCC---CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 358999999999999888754 23 55556654 5554443 334311 111221111 1234 48999887
Q ss_pred cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHH-HhcCCceEE
Q 017068 293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRI-ANTVRWTAA 352 (378)
Q Consensus 293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~-~~~l~W~~~ 352 (378)
... ..|........|.....+|-|+-|+|+|||.+++. |.......+.+. .+.-+|+..
T Consensus 94 ~~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 94 NFP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred ECC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 532 12321112224455567899999999999999886 555556655444 443345543
No 127
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.42 E-value=4.2e-05 Score=69.97 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=58.0
Q ss_pred EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCC-CccccccccCccccccCCCC
Q 017068 227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGS 304 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typ-rtyDliH~~~~~~~~~~~~~ 304 (378)
+|||+|||.|.++.+|.+..-. ++.-.|.+ ..+..+.++|+--+..|..+.+++++ ++||+|-|..+|....
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~---- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR---- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc----
Confidence 7999999999999888654211 23444544 66777777776333344443333344 7999999998887553
Q ss_pred CCCCCCccceeeeecccccCCCeEEEe
Q 017068 305 NKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 305 ~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
+...+|-||-|++ |..|+.
T Consensus 90 -----d~~~~l~e~~r~~---~~~ii~ 108 (194)
T TIGR02081 90 -----NPEEILDEMLRVG---RHAIVS 108 (194)
T ss_pred -----CHHHHHHHHHHhC---CeEEEE
Confidence 2345666665554 445544
No 128
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.41 E-value=0.00018 Score=70.85 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=58.0
Q ss_pred EecCCCCChHHHHHHHHHc--------CC----------------------------CeEEEEcccCCCCCC-CCceeEE
Q 017068 9 LSFAPRDSHKAQIQFALER--------GI----------------------------PAFVAMLGTRRLPFP-AFSFDIV 51 (378)
Q Consensus 9 ms~ap~D~se~~vq~A~er--------g~----------------------------~~~~~v~dae~LPfp-d~SFD~V 51 (378)
+.|-..|+|+..++.|++- ++ .+.|...+....|++ .+.||+|
T Consensus 148 ~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I 227 (287)
T PRK10611 148 WKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAI 227 (287)
T ss_pred cEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCccee
Confidence 3455667778999998773 11 123555565554554 6889999
Q ss_pred EecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068 52 HCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 52 ~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p 86 (378)
+|.++++|+.... .++++.+.+.|+|||+|++...
T Consensus 228 ~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 228 FCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred eHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 9999999997643 5899999999999999988654
No 129
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.41 E-value=8.7e-05 Score=69.22 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=65.9
Q ss_pred eeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhcc-ccc-cccccccCCCCCCccccccccCccccc
Q 017068 225 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IGV-YHDWCEPFSTYPRTYDLIHVSGIESLI 299 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig~-~~~w~~~f~typrtyDliH~~~~~~~~ 299 (378)
-..|||+|||+|.++..|... .. ++...|.+ .+++.+-++.- +.+ ..+-.++|+ +++||+|-|..++.++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~---~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFK---HIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC
Confidence 457999999999999998765 33 56777765 78887766421 112 223333332 4899999999999866
Q ss_pred cCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
. .-.+..++-||.|++ +++++|.+
T Consensus 119 ~-------p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 119 N-------PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred C-------HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 3 124567899999998 57888864
No 130
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.37 E-value=8.4e-05 Score=71.21 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=61.7
Q ss_pred CCCChHHHHHHHHHc---CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068 13 PRDSHKAQIQFALER---GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 13 p~D~se~~vq~A~er---g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
..|.|..|++.++.. ++.....++|-|.|||.++|||+|+++..+ ||.++-...+..+.-.|||.|.|+-+.
T Consensus 100 ~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 100 MMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred eeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hhhccCchHHHHHHHhcCCCccchhHH
Confidence 357888999998775 455567889999999999999999998875 898877699999999999999998764
No 131
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.36 E-value=0.00031 Score=70.14 Aligned_cols=74 Identities=26% Similarity=0.283 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHcC-----------CCeEEEEccc------CCCCCCCCceeEEEecCccccccCCh---HHHHHHHhh
Q 017068 14 RDSHKAQIQFALERG-----------IPAFVAMLGT------RRLPFPAFSFDIVHCSRCLIPFTAYN---ATYLIEVDR 73 (378)
Q Consensus 14 ~D~se~~vq~A~erg-----------~~~~~~v~da------e~LPfpd~SFD~V~cs~~l~hw~~~~---~~~L~Ev~R 73 (378)
.|+++..|+.|++|. .++.|..+|. ..++++|.+||+|-|-+|+|+--... ..+|+.+.+
T Consensus 146 iDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~ 225 (389)
T KOG1975|consen 146 IDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAK 225 (389)
T ss_pred eehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHh
Confidence 455578888888872 2456777762 46788888899999999987643322 479999999
Q ss_pred cccCCcEEEEEcCC
Q 017068 74 LLRPGGYLVISGPP 87 (378)
Q Consensus 74 VLkPGG~lvis~pp 87 (378)
.|||||+|+-+.|.
T Consensus 226 ~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 226 CLKPGGVFIGTIPD 239 (389)
T ss_pred hcCCCcEEEEecCc
Confidence 99999999999883
No 132
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.35 E-value=0.00031 Score=65.52 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=51.5
Q ss_pred EecCCCCChHHHHHHHHHc--------CC-------------------------CeEEEEcccCCCCCCCCceeEEEecC
Q 017068 9 LSFAPRDSHKAQIQFALER--------GI-------------------------PAFVAMLGTRRLPFPAFSFDIVHCSR 55 (378)
Q Consensus 9 ms~ap~D~se~~vq~A~er--------g~-------------------------~~~~~v~dae~LPfpd~SFD~V~cs~ 55 (378)
+.|-.+|+|...++.|++- ++ .+.|...+....+-+.+.||+|+|..
T Consensus 65 ~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRN 144 (196)
T PF01739_consen 65 FRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRN 144 (196)
T ss_dssp EEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-S
T ss_pred eEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecC
Confidence 5666778888999999772 22 23455666555455678999999999
Q ss_pred ccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068 56 CLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 56 ~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p 86 (378)
+++++.+.. .++++.+++.|+|||+|++...
T Consensus 145 VlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 145 VLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp SGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred EEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 999997754 5899999999999999999754
No 133
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.35 E-value=0.00039 Score=65.70 Aligned_cols=139 Identities=15% Similarity=0.233 Sum_probs=78.2
Q ss_pred cccccchHHHHHHHHHHHHHhh-----h------hcC-CCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCCcchH
Q 017068 196 DVFEADSRRWRRRVAYYKNTLN-----V------KLG-TPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLS 262 (378)
Q Consensus 196 ~~F~~d~~~w~~~v~~Y~~~~~-----~------~~~-~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~~~l~ 262 (378)
+.|.+|-+.|..-=..|.+++. | .|. ...--.|-|||||-|..|+++.+. .|.-.-+++.+..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~---- 107 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR---- 107 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTT----
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCC----
Confidence 5588888777766555665542 1 122 233458999999999999887532 4655555554432
Q ss_pred HHHhhccccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHH---HHH
Q 017068 263 VIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV---IDK 339 (378)
Q Consensus 263 ~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~---~~~ 339 (378)
.+. -|- ...|.-+.+.|.+.+ |+|.- .-+..++|.|..|||||||.++|-+-..- ++.
T Consensus 108 ------Vta--cdi-a~vPL~~~svDv~Vf--cLSLM--------GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~ 168 (219)
T PF05148_consen 108 ------VTA--CDI-ANVPLEDESVDVAVF--CLSLM--------GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQ 168 (219)
T ss_dssp ------EEE--S-T-TS-S--TT-EEEEEE--ES-----------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHH
T ss_pred ------EEE--ecC-ccCcCCCCceeEEEE--Ehhhh--------CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHH
Confidence 111 011 123334489998876 44432 23557999999999999999999886543 344
Q ss_pred HHHHHhcCCceEEEecCC
Q 017068 340 VSRIANTVRWTAAVHDKE 357 (378)
Q Consensus 340 ~~~~~~~l~W~~~~~~~~ 357 (378)
..+..+++-.++...|..
T Consensus 169 F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 169 FIKALKKLGFKLKSKDES 186 (219)
T ss_dssp HHHHHHCTTEEEEEEE--
T ss_pred HHHHHHHCCCeEEecccC
Confidence 445578888888876643
No 134
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.34 E-value=0.00035 Score=65.14 Aligned_cols=79 Identities=16% Similarity=0.304 Sum_probs=57.3
Q ss_pred CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEE
Q 017068 4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLV 82 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lv 82 (378)
.+|+|+|+++.-+.. ..+.|.++++++...+.|.....++ +.||+|++..+++|...+. ...++.|..-++|||+++
T Consensus 53 ~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 53 FDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp -EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEE
T ss_pred CeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEE
Confidence 467888887643333 2455667789988888898887876 6899999988887776653 478899999999999988
Q ss_pred EE
Q 017068 83 IS 84 (378)
Q Consensus 83 is 84 (378)
+.
T Consensus 131 i~ 132 (192)
T PF03848_consen 131 IV 132 (192)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.33 E-value=0.00013 Score=77.05 Aligned_cols=139 Identities=15% Similarity=0.263 Sum_probs=83.5
Q ss_pred eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----ccc---c-ccccccccCCCCCCccccccccCc
Q 017068 226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLI---G-VYHDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gli---g-~~~~w~~~f~typrtyDliH~~~~ 295 (378)
..|||+|||+|.++.+|+.. +- ..|+..|.+ ..+.++-++ |+- - +..|+.+.++ ++.||+|.|+--
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsNPP 215 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNPP 215 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEECCC
Confidence 57999999999999877642 21 145666755 666655544 442 1 2345544332 368999998643
Q ss_pred cccccCC-----CC---C------CCCCC---ccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCC
Q 017068 296 ESLIKNP-----GS---N------KNSCS---LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEP 358 (378)
Q Consensus 296 ~~~~~~~-----~~---~------~~~c~---~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~ 358 (378)
+...... +. + ...-. +..++-++.++|+|||.+++.-....-+++.+++.+..|+....-.+
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D- 294 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKD- 294 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEec-
Confidence 3321100 00 0 00011 22466788999999999999755556667888777777765432222
Q ss_pred CCCCCeEEEEEE
Q 017068 359 GSNGREKILVAT 370 (378)
Q Consensus 359 ~~~~~e~~l~~~ 370 (378)
-.+.++++++.
T Consensus 295 -~~g~~R~v~~~ 305 (506)
T PRK01544 295 -LQGHSRVILIS 305 (506)
T ss_pred -CCCCceEEEec
Confidence 13568888765
No 136
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.32 E-value=0.00067 Score=66.26 Aligned_cols=67 Identities=30% Similarity=0.473 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEc
Q 017068 16 SHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 16 ~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~ 85 (378)
+|+.|++.|+++ |+. +.+...|...++. .||.|++..++.|..... ..+++++.|+|||||.+++..
T Consensus 93 lS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 93 LSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp S-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 468999988764 554 5667777766654 999999999999996532 489999999999999999753
No 137
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.31 E-value=0.00052 Score=70.31 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=56.3
Q ss_pred CCCeEEEecCCCCChHHHHHHHHHcCCC-eEEEEcccCCC--CCCCCceeEEEecCccccccCCh------HHHHHHHhh
Q 017068 3 SENILTLSFAPRDSHKAQIQFALERGIP-AFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAYN------ATYLIEVDR 73 (378)
Q Consensus 3 ~~~v~~ms~ap~D~se~~vq~A~erg~~-~~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~~~~------~~~L~Ev~R 73 (378)
+.+++++++.+..+..+ .+.|.++++. +.+..+|+..+ ++++++||.|++.+. .+|+... ...+.|+.|
T Consensus 146 ~~~~iGIEI~~~~i~~a-~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP-dPW~KkrHRRlv~~~fL~e~~R 223 (390)
T PRK14121 146 NKLFIGIEIHTPSIEQV-LKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP-VPWDKKPHRRVISEDFLNEALR 223 (390)
T ss_pred CCCEEEEECCHHHHHHH-HHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-CCccccchhhccHHHHHHHHHH
Confidence 35778888775333322 2333444553 56677888655 689999999997653 3554322 278999999
Q ss_pred cccCCcEEEEEcC
Q 017068 74 LLRPGGYLVISGP 86 (378)
Q Consensus 74 VLkPGG~lvis~p 86 (378)
+|+|||.+.+.+-
T Consensus 224 vLkpGG~l~l~TD 236 (390)
T PRK14121 224 VLKPGGTLELRTD 236 (390)
T ss_pred HcCCCcEEEEEEE
Confidence 9999999998763
No 138
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.31 E-value=0.0006 Score=56.33 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=47.5
Q ss_pred CCChHHHHHHHHHc----CC-CeEEEEcccCC-CCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068 14 RDSHKAQIQFALER----GI-PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~-~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
.|.++.+++.|+++ +. .+.+...++.. +++..++||.|++..+..+ . ..+++++.|+|||||+|+++.
T Consensus 49 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~-~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 49 IERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL---L-QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh---H-HHHHHHHHHHcCCCCEEEEEe
Confidence 34456777777653 33 35566666554 4455579999998765432 2 388999999999999999875
No 139
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.31 E-value=0.00013 Score=67.77 Aligned_cols=95 Identities=8% Similarity=0.072 Sum_probs=66.8
Q ss_pred CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc-------c-ccccccccCCCCCCccccccccC
Q 017068 224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-------G-VYHDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli-------g-~~~~w~~~f~typrtyDliH~~~ 294 (378)
.-..|||+|||.|.|+..|.+++. .|.-.|.+ .++..+.+|.-. . ...|.. ..+.+||+|-+..
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~~~~fD~ii~~~ 127 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL----SLCGEFDIVVCMD 127 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh----hCCCCcCEEEEhh
Confidence 356899999999999999987765 56677765 777777666421 1 122222 2248899998877
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
++..+. ...+..++-++.|+++|++++.+..
T Consensus 128 ~l~~~~-------~~~~~~~l~~i~~~~~~~~~i~~~~ 158 (219)
T TIGR02021 128 VLIHYP-------ASDMAKALGHLASLTKERVIFTFAP 158 (219)
T ss_pred HHHhCC-------HHHHHHHHHHHHHHhCCCEEEEECC
Confidence 776542 2345678899999999888877754
No 140
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.30 E-value=0.00076 Score=60.79 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCC--------------------hHHHHHH
Q 017068 15 DSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY--------------------NATYLIE 70 (378)
Q Consensus 15 D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~--------------------~~~~L~E 70 (378)
|.++.+++.|+++ +..+.+..+|....+ .++||+|+++..+++..+. -...+++
T Consensus 48 D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 125 (179)
T TIGR00537 48 DINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDE 125 (179)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHh
Confidence 4446788777764 445566667765543 4599999998777655432 1257999
Q ss_pred HhhcccCCcEEEEEcC
Q 017068 71 VDRLLRPGGYLVISGP 86 (378)
Q Consensus 71 v~RVLkPGG~lvis~p 86 (378)
+.|+|||||.+++..+
T Consensus 126 ~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 126 LPEILKEGGRVQLIQS 141 (179)
T ss_pred HHHhhCCCCEEEEEEe
Confidence 9999999999998765
No 141
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.29 E-value=7.6e-05 Score=73.04 Aligned_cols=101 Identities=14% Similarity=0.258 Sum_probs=64.7
Q ss_pred cCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCCcchHHH----Hhhcccc----ccccccccCCCCCCccccc
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVI----YDRGLIG----VYHDWCEPFSTYPRTYDLI 290 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~~~l~~i----~eRGlig----~~~~w~~~f~typrtyDli 290 (378)
+.....+.|+|+|||+|.++.++..+ |-. +++-.|.+..++.+ -+.|+-. +-+|-.+ .++| .+|++
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~--~~~~-~~D~v 219 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK--ESYP-EADAV 219 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccC--CCCC-CCCEE
Confidence 44456789999999999999888754 321 34444545455443 3445532 2233322 1234 37998
Q ss_pred cccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 291 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 291 H~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
-.++++..|. .. ....+|-++-|.|+|||.++|-|
T Consensus 220 ~~~~~lh~~~-----~~--~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 220 LFCRILYSAN-----EQ--LSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EeEhhhhcCC-----hH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 8877776653 11 12468889999999999999875
No 142
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.28 E-value=0.00094 Score=61.14 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=49.7
Q ss_pred CeEEEecCCCCChHHHHHHHHH----cCCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068 5 NILTLSFAPRDSHKAQIQFALE----RGIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 79 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~e----rg~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG 79 (378)
.|+++++++ .|++.|++ .+++ +.+..+|++.++ ++++||+|+|.. + .+.. ..++++.|+|||||
T Consensus 68 ~V~~iD~s~-----~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~---~~~~-~~~~~~~~~LkpgG 136 (181)
T TIGR00138 68 KLTLLESNH-----KKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L---ASLN-VLLELTLNLLKVGG 136 (181)
T ss_pred eEEEEeCcH-----HHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h---hCHH-HHHHHHHHhcCCCC
Confidence 466666654 55555443 3553 677888888875 368999998754 3 2333 67889999999999
Q ss_pred EEEEEcC
Q 017068 80 YLVISGP 86 (378)
Q Consensus 80 ~lvis~p 86 (378)
.+++...
T Consensus 137 ~lvi~~~ 143 (181)
T TIGR00138 137 YFLAYKG 143 (181)
T ss_pred EEEEEcC
Confidence 9998643
No 143
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.28 E-value=0.00052 Score=64.17 Aligned_cols=56 Identities=14% Similarity=-0.040 Sum_probs=41.7
Q ss_pred eEEEEcccCCCC--------CCCCceeEEEecCccccccCCh----------HHHHHHHhhcccCCcEEEEEcC
Q 017068 31 AFVAMLGTRRLP--------FPAFSFDIVHCSRCLIPFTAYN----------ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 31 ~~~~v~dae~LP--------fpd~SFD~V~cs~~l~hw~~~~----------~~~L~Ev~RVLkPGG~lvis~p 86 (378)
+.+..+|+...+ +++++||+|+|..+.....++. ..+|+++.|+|||||.|++...
T Consensus 93 v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 93 VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 567778877753 7889999999976543322210 2589999999999999999653
No 144
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.28 E-value=0.00037 Score=67.91 Aligned_cols=141 Identities=18% Similarity=0.266 Sum_probs=84.2
Q ss_pred eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc---c-cccccccccCCCCCCccccccccCc
Q 017068 226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL---I-GVYHDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---i-g~~~~w~~~f~typrtyDliH~~~~ 295 (378)
..|+|+|||+|.++.+|... +- .+|...|.+ ..+.++-+. |+ + =+..|+.++++. ..||+|-++--
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 47999999999999888753 21 155667765 666555543 33 1 123567665432 37999988632
Q ss_pred cccccC----CCC---CCCC---------CCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHh-cCCceEEEecCCC
Q 017068 296 ESLIKN----PGS---NKNS---------CSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIAN-TVRWTAAVHDKEP 358 (378)
Q Consensus 296 ~~~~~~----~~~---~~~~---------c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~-~l~W~~~~~~~~~ 358 (378)
+..-.+ ++. +... -.+..++-+.-+.|+|||++++.-....-..+.++.. ...|.....-.+
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D- 270 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRD- 270 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecC-
Confidence 211100 000 0000 0133577788899999999999766555667777655 456753322122
Q ss_pred CCCCCeEEEEEEec
Q 017068 359 GSNGREKILVATKS 372 (378)
Q Consensus 359 ~~~~~e~~l~~~K~ 372 (378)
-.+.++++++++.
T Consensus 271 -~~g~~R~~~~~~~ 283 (284)
T TIGR00536 271 -LNGKERVVLGFYH 283 (284)
T ss_pred -CCCCceEEEEEec
Confidence 2467899998753
No 145
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.28 E-value=0.00014 Score=71.34 Aligned_cols=75 Identities=24% Similarity=0.229 Sum_probs=63.0
Q ss_pred ecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcEEEEEc
Q 017068 10 SFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 10 s~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~lvis~ 85 (378)
.+.+.|.+...+.-|++.|.. ...++|+.++|+++.+||.+++..+++||.... ..+++|+.|+|||||...+..
T Consensus 67 ~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 67 LIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred eeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 466778888988888887754 466789999999999999999999999997643 589999999999999876543
No 146
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0036 Score=62.07 Aligned_cols=127 Identities=18% Similarity=0.241 Sum_probs=74.7
Q ss_pred EEEecCCcceeeeeeccCCC---eeEEEeccCCCC-cchH----HHHhhcccc--c-cccccccCCCCCCccccccccCc
Q 017068 227 NIMDMNAFFGGFAAALTSDP---VWVMNVVPARKS-STLS----VIYDRGLIG--V-YHDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~~---vwvmnv~p~~~~-~~l~----~i~eRGlig--~-~~~w~~~f~typrtyDliH~~~~ 295 (378)
+|+|+|||+|=.|+.|.++. -++| +|.. .-|+ -+.+.++-+ + ..|-.++ =...||+|-|.--
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtm----vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~---v~~kfd~IisNPP 233 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTL----VDVNARAVESARKNLAANGVENTEVWASNLYEP---VEGKFDLIISNPP 233 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEE----EecCHHHHHHHHHhHHHcCCCccEEEEeccccc---ccccccEEEeCCC
Confidence 99999999999999998554 3444 3332 1121 122334444 2 2233432 2348999998766
Q ss_pred cccccCCCCCCCCCCccceeeeecccccCCCeEEEe--CCHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068 296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR--DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS 372 (378)
Q Consensus 296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~--d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~ 372 (378)
|..-+ ....--...++-+-=+-|++||-++|- .-..+-.+++++.. ++...... ++-+||-++|.
T Consensus 234 fh~G~----~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k~ 300 (300)
T COG2813 234 FHAGK----AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKKA 300 (300)
T ss_pred ccCCc----chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEecC
Confidence 66321 000000125667778899999987665 44556677777665 45444332 46778877763
No 147
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00057 Score=66.93 Aligned_cols=160 Identities=17% Similarity=0.181 Sum_probs=98.2
Q ss_pred cccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHH----Hhhccc--
Q 017068 198 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLI-- 270 (378)
Q Consensus 198 F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i----~eRGli-- 270 (378)
...||..+-..+..... ..+. +|+|||||+|-.|.+|....-- .+|..+|-+ .-|.++ -..|+.
T Consensus 92 Pr~dTe~Lve~~l~~~~------~~~~--~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~ 162 (280)
T COG2890 92 PRPDTELLVEAALALLL------QLDK--RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRV 162 (280)
T ss_pred cCCchHHHHHHHHHhhh------hcCC--cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccE
Confidence 45688888887762121 1122 9999999999999999754321 467888865 555444 333542
Q ss_pred -cccccccccCCCCCCccccccccCccccccCCCC-C------------CCCCC---ccceeeeecccccCCCeEEEeCC
Q 017068 271 -GVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGS-N------------KNSCS---LVDLMVEMDRMLRPEGTVVVRDS 333 (378)
Q Consensus 271 -g~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~-~------------~~~c~---~~~~l~EmDRiLRPgG~~ii~d~ 333 (378)
-+..|| |+..+..||+|.|+--.-.-.++.. + ..... +..++-+..++|+|||++++.-.
T Consensus 163 ~~~~~dl---f~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 163 LVVQSDL---FEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred EEEeeec---ccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 222344 4445569999998743321110000 0 01122 23678889999999999999987
Q ss_pred HHHHHHHHHHHhcCCc-eEEEecCCCCCCCCeEEEEEEe
Q 017068 334 PEVIDKVSRIANTVRW-TAAVHDKEPGSNGREKILVATK 371 (378)
Q Consensus 334 ~~~~~~~~~~~~~l~W-~~~~~~~~~~~~~~e~~l~~~K 371 (378)
.+..+.++++.....+ ...... ..-.+.+++.++++
T Consensus 240 ~~q~~~v~~~~~~~~~~~~v~~~--~d~~g~~rv~~~~~ 276 (280)
T COG2890 240 LTQGEAVKALFEDTGFFEIVETL--KDLFGRDRVVLAKL 276 (280)
T ss_pred CCcHHHHHHHHHhcCCceEEEEE--ecCCCceEEEEEEe
Confidence 7777888888888884 222111 12246777777765
No 148
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.24 E-value=7.9e-05 Score=69.40 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=92.5
Q ss_pred hhhhcCCCCeeEEEecCCcceeeeeeccC-CCeeEEEeccCCCC-cchHHHHhhccccccccccccCCCCC-Cccccccc
Q 017068 216 LNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHV 292 (378)
Q Consensus 216 ~~~~~~~~~iR~vlDm~ag~g~faa~L~~-~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f~typ-rtyDliH~ 292 (378)
+...|..| -.|||+|||.|.+-++|.+ ++|-. .-.+-. ..+.-..+||+-=+-+|.-+-++.|| .+||.+-.
T Consensus 7 I~~~I~pg--srVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 7 IAEWIEPG--SRVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred HHHHcCCC--CEEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence 44456666 5799999999999999986 67744 333433 67888999999878888888888898 89999999
Q ss_pred cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe------------------------------CCH----HHHH
Q 017068 293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR------------------------------DSP----EVID 338 (378)
Q Consensus 293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~------------------------------d~~----~~~~ 338 (378)
+..+.... .-+.+|-|| ||=|.-.|++ |+. -++.
T Consensus 82 sqtLQ~~~---------~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~ 149 (193)
T PF07021_consen 82 SQTLQAVR---------RPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIK 149 (193)
T ss_pred HhHHHhHh---------HHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHH
Confidence 98887665 135789998 5557788887 222 2678
Q ss_pred HHHHHHhcCCceEE
Q 017068 339 KVSRIANTVRWTAA 352 (378)
Q Consensus 339 ~~~~~~~~l~W~~~ 352 (378)
..+++.+.+..++.
T Consensus 150 DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 150 DFEDLCRELGIRIE 163 (193)
T ss_pred HHHHHHHHCCCEEE
Confidence 88888888888875
No 149
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.24 E-value=0.00034 Score=68.41 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=73.8
Q ss_pred eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~~ 294 (378)
.+|||+|||+|.++.+|..+ +. .|+..|.+ ..+..+-++ |+ +- +..|+.+.++ +.+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~---~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA---EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECC
Confidence 57999999999999999754 23 55667765 666555443 54 22 2344444442 35899999863
Q ss_pred ccccccC-----CCC--C--------CCCC-CccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEec
Q 017068 295 IESLIKN-----PGS--N--------KNSC-SLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHD 355 (378)
Q Consensus 295 ~~~~~~~-----~~~--~--------~~~c-~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~ 355 (378)
-+..... +.. + .+.. .+..++-+.-+.|+|||.+++.-..+. .+++++.+...|...-.+
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFE 273 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeec
Confidence 2211000 000 0 0000 124677888999999999998644333 678887776555544443
No 150
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.23 E-value=0.00091 Score=63.14 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=53.6
Q ss_pred CeEEEecCCCCChHHHHHHH-HHcCC----------------CeEEEEcccCCCCCC-CCceeEEEecCccccccCCh-H
Q 017068 5 NILTLSFAPRDSHKAQIQFA-LERGI----------------PAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTAYN-A 65 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A-~erg~----------------~~~~~v~dae~LPfp-d~SFD~V~cs~~l~hw~~~~-~ 65 (378)
+|+|++++| ..++.| .++++ .+.+.++|...++.. ...||.|+-..+++|++... .
T Consensus 61 ~V~avD~s~-----~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~ 135 (218)
T PRK13255 61 EVLGVELSE-----LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRE 135 (218)
T ss_pred eEEEEccCH-----HHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHH
Confidence 577777775 555554 34444 345677888777543 36899999888888987643 5
Q ss_pred HHHHHHhhcccCCcEEEE
Q 017068 66 TYLIEVDRLLRPGGYLVI 83 (378)
Q Consensus 66 ~~L~Ev~RVLkPGG~lvi 83 (378)
.+++.+.++|||||++++
T Consensus 136 ~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 136 RYVQQLAALLPAGCRGLL 153 (218)
T ss_pred HHHHHHHHHcCCCCeEEE
Confidence 899999999999996443
No 151
>PRK14967 putative methyltransferase; Provisional
Probab=97.23 E-value=0.00015 Score=67.81 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=68.4
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc-c-cccccccccCCCCCCccccccccCcccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL-I-GVYHDWCEPFSTYPRTYDLIHVSGIESL 298 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-i-g~~~~w~~~f~typrtyDliH~~~~~~~ 298 (378)
-.|||+|||.|.++..+...+. -+|+-.|-. .++..+-+ .|+ + -+..|+.+.++ +.+||+|.++--+..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 4799999999999888776532 144555544 55543333 233 1 12235554332 368999999743321
Q ss_pred ccCCCC------------CCCCCCccceeeeecccccCCCeEEEeC-CHHHHHHHHHHHhcCCceEEE
Q 017068 299 IKNPGS------------NKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAV 353 (378)
Q Consensus 299 ~~~~~~------------~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~~~~~~~~~l~W~~~~ 353 (378)
-...+. ......+..++-++-|+|+|||.+++-. +.....++.+.+++-.+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 110000 0011123456778999999999998842 222333444444544554443
No 152
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.22 E-value=0.00012 Score=65.96 Aligned_cols=146 Identities=19% Similarity=0.252 Sum_probs=72.8
Q ss_pred cCCCCeeEEEecCCcceeeeeeccCCC-----eeEEEeccCCCCcchHHHHhhccc---cccccccccCCCCCCcccccc
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTSDP-----VWVMNVVPARKSSTLSVIYDRGLI---GVYHDWCEPFSTYPRTYDLIH 291 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~~~-----vwvmnv~p~~~~~~l~~i~eRGli---g~~~~w~~~f~typrtyDliH 291 (378)
+..+.-.+|||+||+.|||..+++.+. |+-+-+.|.+....+..+ +|=+ .....-.+.++.-...+|+|.
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 455678999999999999999999887 233344443221111111 1111 111122222221126899999
Q ss_pred ccCccccccCCCCCCCCCCccceeee---ecccccCCCeEEEe-----CCHHHHHHHHHHHhcCCceEEEecCCCCCCCC
Q 017068 292 VSGIESLIKNPGSNKNSCSLVDLMVE---MDRMLRPEGTVVVR-----DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGR 363 (378)
Q Consensus 292 ~~~~~~~~~~~~~~~~~c~~~~~l~E---mDRiLRPgG~~ii~-----d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~ 363 (378)
|+..+..-..+..+ ..-.+..++-+ +-..|+|||.+|+- +..+.+..++...+..++-.-.. .++.+.
T Consensus 97 ~D~~~~~~g~~~~d-~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~---sr~~s~ 172 (181)
T PF01728_consen 97 SDMAPNVSGDRNID-EFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPS---SRSESS 172 (181)
T ss_dssp E-------SSHHSS-HHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TT---SBTTCB
T ss_pred cccccCCCCchhhH-HHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcC---CCCCcc
Confidence 99854321100000 00011122222 23569999988874 23466666776666544433322 234578
Q ss_pred eEEEEEEe
Q 017068 364 EKILVATK 371 (378)
Q Consensus 364 e~~l~~~K 371 (378)
|.+|||.+
T Consensus 173 E~Ylv~~~ 180 (181)
T PF01728_consen 173 EEYLVCRG 180 (181)
T ss_dssp EEEEESEE
T ss_pred EEEEEEcC
Confidence 99999975
No 153
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.22 E-value=0.00064 Score=66.23 Aligned_cols=137 Identities=17% Similarity=0.238 Sum_probs=87.0
Q ss_pred ccccchHHHHHHHHHHHHHhh-----h---hcCC----CCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHH
Q 017068 197 VFEADSRRWRRRVAYYKNTLN-----V---KLGT----PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVI 264 (378)
Q Consensus 197 ~F~~d~~~w~~~v~~Y~~~~~-----~---~~~~----~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i 264 (378)
.|++|.+.+.--=..|-.++. | .|.+ ..--.|-|||||-|-.|. -...+|..|-+++.+..-+.
T Consensus 141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~V~~--- 216 (325)
T KOG3045|consen 141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS-SERHKVHSFDLVAVNERVIA--- 216 (325)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh-ccccceeeeeeecCCCceee---
Confidence 488886665544444444432 1 0111 122358899999998875 34567888888887653110
Q ss_pred HhhccccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHH---H
Q 017068 265 YDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKV---S 341 (378)
Q Consensus 265 ~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~---~ 341 (378)
-|-.. .|.-++|.|++.+ |+|.- .-++.+.+.|..|||+|||.++|-+-..-...+ .
T Consensus 217 ---------cDm~~-vPl~d~svDvaV~--CLSLM--------gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~ 276 (325)
T KOG3045|consen 217 ---------CDMRN-VPLEDESVDVAVF--CLSLM--------GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFV 276 (325)
T ss_pred ---------ccccC-CcCccCcccEEEe--eHhhh--------cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHH
Confidence 01111 3555699998776 56643 346789999999999999999998765433333 3
Q ss_pred HHHhcCCceEEEecCC
Q 017068 342 RIANTVRWTAAVHDKE 357 (378)
Q Consensus 342 ~~~~~l~W~~~~~~~~ 357 (378)
+-+++|-.++...|..
T Consensus 277 r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 277 RALTKLGFDVKHKDVS 292 (325)
T ss_pred HHHHHcCCeeeehhhh
Confidence 3367788888766544
No 154
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.21 E-value=8.5e-05 Score=72.99 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=83.8
Q ss_pred Cccccccch-HHHHHHHHHHHHHhhh-hcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cch----HHHH
Q 017068 194 GYDVFEADS-RRWRRRVAYYKNTLNV-KLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STL----SVIY 265 (378)
Q Consensus 194 ~~~~F~~d~-~~w~~~v~~Y~~~~~~-~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l----~~i~ 265 (378)
|-..|+.++ ..=......+-..+.. .++.| -+|||+|||-|+++-+++.+ +| +|+-++-+ +|+ +-|.
T Consensus 42 scayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~ 116 (283)
T COG2230 42 SCAYFEDPDMTLEEAQRAKLDLILEKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIA 116 (283)
T ss_pred eeEEeCCCCCChHHHHHHHHHHHHHhcCCCCC--CEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHH
Confidence 444566664 2333333333332221 15555 47999999999999988865 79 55555555 666 4467
Q ss_pred hhccc----cccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 266 DRGLI----GVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 266 eRGli----g~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
++|+- -.++||+.. +-.||=|.+-+.|-+.. .-+..+++-=+.++|+|||-+++.
T Consensus 117 ~~gl~~~v~v~l~d~rd~----~e~fDrIvSvgmfEhvg-------~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 117 ARGLEDNVEVRLQDYRDF----EEPFDRIVSVGMFEHVG-------KENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred HcCCCcccEEEecccccc----ccccceeeehhhHHHhC-------cccHHHHHHHHHhhcCCCceEEEE
Confidence 78995 358888863 33399999999988763 345678899999999999999886
No 155
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.21 E-value=0.00017 Score=69.41 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=79.4
Q ss_pred eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----ccccccccccccCCC-CCCccccccccCcccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFST-YPRTYDLIHVSGIESL 298 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~w~~~f~t-yprtyDliH~~~~~~~ 298 (378)
..|+|+|||+|.++-+|... +- .+|+-.|.+ ..++.+-+. |.--+-.|+.+.++. ....||+|-++--+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 47999999999999887642 21 144566654 555443332 321123455443321 2357999988754332
Q ss_pred cc-----CCCC--CCCCCC----------ccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEecCCC
Q 017068 299 IK-----NPGS--NKNSCS----------LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEP 358 (378)
Q Consensus 299 ~~-----~~~~--~~~~c~----------~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~~~~~ 358 (378)
.. .++. ...+.. +..++-...++|+|||.+++.-..+...++..++++..|+..+..+++
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEccc
Confidence 10 0000 000111 236777788999999999987656667788888888888888776654
No 156
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.21 E-value=8.9e-05 Score=74.56 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=77.3
Q ss_pred EEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHH----HhhccccccccccccCCCCCCccccccccCcccccc
Q 017068 227 NIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~ 300 (378)
.|||+|||+|.++.++..+ +- ..|+-.|.+ ..+..+ -+.|+-+.+. +...++..+..||+|.|+-.|....
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~--~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK--IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 5999999999999998765 21 134555554 444332 2234433221 2222333458899999987775321
Q ss_pred CCCCCCCCCCccceeeeecccccCCCeEEEeCC--HHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--PEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS 372 (378)
Q Consensus 301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~--~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~ 372 (378)
....-..+.++-++-|.|+|||.++|-.. ..+-..+++..... ++... .++-+|+-|+|.
T Consensus 276 ----~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~la~------~~~f~v~~a~~~ 337 (342)
T PRK09489 276 ----QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EVLAQ------TGRFKVYRAIMT 337 (342)
T ss_pred ----cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EEEEe------CCCEEEEEEEcc
Confidence 01112246788999999999999988643 22334445444332 33332 146688888764
No 157
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.21 E-value=0.00035 Score=69.25 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=69.5
Q ss_pred eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh----cc---cc-ccccccccCCCCCCccccccccCc
Q 017068 226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~w~~~f~typrtyDliH~~~~ 295 (378)
.+|||+|||+|.++.+|... +- .+|+..|-+ ..+..+-++ |+ +- +..|+.+.++ +.+||+|.|+--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 57999999999999988754 22 256777765 666555443 44 22 2345555443 368999998733
Q ss_pred ccccc-----------CCCC----CCCCC-CccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcC
Q 017068 296 ESLIK-----------NPGS----NKNSC-SLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTV 347 (378)
Q Consensus 296 ~~~~~-----------~~~~----~~~~c-~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l 347 (378)
+.... .|.. ..+.. .+..++-+.-+.|+|||.+++.-..+ ..++.++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 22110 0000 00000 12367888899999999999853322 34566665544
No 158
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.21 E-value=0.00012 Score=56.36 Aligned_cols=95 Identities=24% Similarity=0.280 Sum_probs=58.2
Q ss_pred EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH---hhcc---cccc-ccccccCCCCCCccccccccCcccc
Q 017068 227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---DRGL---IGVY-HDWCEPFSTYPRTYDLIHVSGIESL 298 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~---eRGl---ig~~-~~w~~~f~typrtyDliH~~~~~~~ 298 (378)
+++|+|||.|+++..+...+. .++.-.|.+ ..+..+- +.+. +-.+ .|.......-+..||++.+...+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 489999999999988887221 244455543 3333222 1111 1111 2222221113478999999888764
Q ss_pred ccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
+. -....++-.+.+.|||||++++.
T Consensus 79 ~~--------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LV--------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hh--------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 21 12357888889999999999986
No 159
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.20 E-value=0.00091 Score=65.48 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=51.2
Q ss_pred HHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068 19 AQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 19 ~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.+++.|+++ |.. +.+..+|....++|+ +|+|++++++++|.+.. ..+++++.|+|||||++++...
T Consensus 183 ~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 183 GAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred HHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 566666543 443 567778887777775 69999999999987654 4799999999999999999764
No 160
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.20 E-value=0.00087 Score=62.18 Aligned_cols=69 Identities=22% Similarity=0.184 Sum_probs=50.0
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 78 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG 78 (378)
.|+++++. +.+++.|+++ +.. +.+..+|+...+.++++||+|++..++.|. ..|+.|+|+||
T Consensus 99 ~V~~iD~~-----~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~g 166 (205)
T PRK13944 99 KVYTVEIV-----KELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI-------PSALVRQLKDG 166 (205)
T ss_pred EEEEEeCC-----HHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchh-------hHHHHHhcCcC
Confidence 45556555 5777777653 443 567778887665567899999998776543 35889999999
Q ss_pred cEEEEEc
Q 017068 79 GYLVISG 85 (378)
Q Consensus 79 G~lvis~ 85 (378)
|++++..
T Consensus 167 G~lvi~~ 173 (205)
T PRK13944 167 GVLVIPV 173 (205)
T ss_pred cEEEEEE
Confidence 9999854
No 161
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.19 E-value=8.7e-06 Score=66.50 Aligned_cols=91 Identities=24% Similarity=0.270 Sum_probs=60.0
Q ss_pred EEecCCcceeeeeeccCCC--eeEEEeccCCCC-cchHHHHhhcc-----cc-ccccccccCCCCCCccccccccCc-cc
Q 017068 228 IMDMNAFFGGFAAALTSDP--VWVMNVVPARKS-STLSVIYDRGL-----IG-VYHDWCEPFSTYPRTYDLIHVSGI-ES 297 (378)
Q Consensus 228 vlDm~ag~g~faa~L~~~~--vwvmnv~p~~~~-~~l~~i~eRGl-----ig-~~~~w~~~f~typrtyDliH~~~~-~~ 297 (378)
|||+|||.|....+|.+.- --...+...|-+ .+|..+.++.- +- +..|. +.++....+||+|-|.++ |.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccC
Confidence 7999999999999887541 011367778866 88888887773 11 12222 223433469999999766 66
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCC
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEG 326 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG 326 (378)
++ +.-.+..++=++=|+|||||
T Consensus 80 ~~-------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL-------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS-------SHHHHHHHHHHHHHTEEEEE
T ss_pred CC-------CHHHHHHHHHHHHHHhCCCC
Confidence 54 33455789999999999998
No 162
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.16 E-value=0.0003 Score=65.51 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=52.9
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH----hhcc--c-cccccccccCCCCCCccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGL--I-GVYHDWCEPFSTYPRTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~----eRGl--i-g~~~~w~~~f~typrtyDliH~~~~~~ 297 (378)
..|||+|||+|.+++.|....--.-.|+..|.. ..+..+- +.|+ + -+..|..+.++. ...||+|+++....
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTAAGP 157 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcCCcc
Confidence 479999999999999886531100013444433 4444333 2344 1 123344443332 25899999864332
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
.+.-++-+.|+|||.+|+.
T Consensus 158 ---------------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 158 ---------------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred ---------------cccHHHHHhcCcCcEEEEE
Confidence 2334567889999999885
No 163
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.16 E-value=0.00067 Score=68.11 Aligned_cols=72 Identities=31% Similarity=0.408 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHcC---------------CCeEEEEcccC------CCCCCCCceeEEEecCccccccCCh---HHHHHH
Q 017068 15 DSHKAQIQFALERG---------------IPAFVAMLGTR------RLPFPAFSFDIVHCSRCLIPFTAYN---ATYLIE 70 (378)
Q Consensus 15 D~se~~vq~A~erg---------------~~~~~~v~dae------~LPfpd~SFD~V~cs~~l~hw~~~~---~~~L~E 70 (378)
|+|...|+.|++|. ..+.+..+|.. .++.+...||+|.|.+++|+.-..+ ..+|+.
T Consensus 92 Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~N 171 (331)
T PF03291_consen 92 DISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKN 171 (331)
T ss_dssp ES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHH
Confidence 45567888888875 24556666643 2233346999999999998876655 368999
Q ss_pred HhhcccCCcEEEEEcC
Q 017068 71 VDRLLRPGGYLVISGP 86 (378)
Q Consensus 71 v~RVLkPGG~lvis~p 86 (378)
+.+.|||||+|+.+.|
T Consensus 172 vs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 172 VSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHHTEEEEEEEEEEEE
T ss_pred HHHhcCCCCEEEEEec
Confidence 9999999999999987
No 164
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.16 E-value=0.00046 Score=64.08 Aligned_cols=68 Identities=24% Similarity=0.230 Sum_probs=52.4
Q ss_pred CCChHHHHHHHHHcC----C--CeEEEEcccCCCCCCCCceeEEEecCccccccCC-hHHHHHHHhhcccCCcEEEEE
Q 017068 14 RDSHKAQIQFALERG----I--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 14 ~D~se~~vq~A~erg----~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-~~~~L~Ev~RVLkPGG~lvis 84 (378)
.|+|+.+++.|+++. . .+.+.++|.+.++ ++||+|++..+++|++.. ...+++++.|++++|+++.++
T Consensus 83 vD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 83 VDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 345578888887752 2 4667888887776 899999999999898653 258899999999988777654
No 165
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.15 E-value=0.001 Score=66.01 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=60.3
Q ss_pred EEecCCCCChHHHHHHHHHc-CCCe-EEEE-cccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068 8 TLSFAPRDSHKAQIQFALER-GIPA-FVAM-LGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 8 ~ms~ap~D~se~~vq~A~er-g~~~-~~~v-~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis 84 (378)
.+.|.|....-.|-+++++- |... .+.. ...+.||. .++||+|+|.-+++|-.++- ..|.++...|||||.+++-
T Consensus 141 ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl-~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 141 VIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPL-DHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred EEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHH-HHHHHHHHhhCCCCEEEEE
Confidence 46777887777777666664 2222 2222 57899998 89999999999999988888 9999999999999999974
Q ss_pred c
Q 017068 85 G 85 (378)
Q Consensus 85 ~ 85 (378)
+
T Consensus 219 T 219 (315)
T PF08003_consen 219 T 219 (315)
T ss_pred E
Confidence 3
No 166
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.15 E-value=0.00015 Score=67.12 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=62.0
Q ss_pred eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----ccccccccccccCCCCCCccccccccCccccc
Q 017068 225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 299 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~w~~~f~typrtyDliH~~~~~~~~ 299 (378)
-.+|||+|||.|.|+..|.+... .|.-.|.+ ++++.+-++ |+-...+-....++..+.+||+|.|..++..+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 46899999999999999987654 46677765 777666554 22111111112244445789999998887655
Q ss_pred cCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 300 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 300 ~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
. .-.+..++-++-|++++++.+.+..
T Consensus 141 ~-------~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 141 P-------QEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred C-------HHHHHHHHHHHHhhcCCeEEEEECC
Confidence 3 1234567777778776555544433
No 167
>PRK04266 fibrillarin; Provisional
Probab=97.14 E-value=0.0024 Score=60.70 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=45.0
Q ss_pred CeEEEecCCCCChHHHHH----HHHHcCCCeEEEEcccCC----CCCCCCceeEEEecCccccccCChHHHHHHHhhccc
Q 017068 5 NILTLSFAPRDSHKAQIQ----FALERGIPAFVAMLGTRR----LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR 76 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq----~A~erg~~~~~~v~dae~----LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLk 76 (378)
.|+++++.| .|++ .|+++ .++.+..+|+.. .+++ ++||+|++... -++....+++|+.|+||
T Consensus 98 ~V~avD~~~-----~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~---~p~~~~~~L~~~~r~LK 167 (226)
T PRK04266 98 VVYAVEFAP-----RPMRELLEVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQDVA---QPNQAEIAIDNAEFFLK 167 (226)
T ss_pred eEEEEECCH-----HHHHHHHHHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEECCC---ChhHHHHHHHHHHHhcC
Confidence 366666654 5555 44443 345666677653 2233 56999986422 11122356899999999
Q ss_pred CCcEEEEEcC
Q 017068 77 PGGYLVISGP 86 (378)
Q Consensus 77 PGG~lvis~p 86 (378)
|||+|+++.+
T Consensus 168 pGG~lvI~v~ 177 (226)
T PRK04266 168 DGGYLLLAIK 177 (226)
T ss_pred CCcEEEEEEe
Confidence 9999999744
No 168
>PRK04457 spermidine synthase; Provisional
Probab=97.11 E-value=0.00081 Score=65.10 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=76.4
Q ss_pred CCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh-cccc-------ccccccccCCCCCCcccccc
Q 017068 222 TPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR-GLIG-------VYHDWCEPFSTYPRTYDLIH 291 (378)
Q Consensus 222 ~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR-Glig-------~~~~w~~~f~typrtyDliH 291 (378)
...-+.|||+|||.|+++..+... |- +.|.-.+-. ..+.++-+. ++.+ +..|-.+-+...+.+||+|-
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEE
Confidence 345688999999999999877543 21 244555543 555555444 1111 12233332344567899997
Q ss_pred ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe---CCHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEE
Q 017068 292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR---DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILV 368 (378)
Q Consensus 292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~---d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~ 368 (378)
++. |.. ...+.. .....++-++-++|+|||.+++- .+...-..++.+.+.+.-.+.....+. ....+++
T Consensus 142 ~D~-~~~---~~~~~~-l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~ 213 (262)
T PRK04457 142 VDG-FDG---EGIIDA-LCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVF 213 (262)
T ss_pred EeC-CCC---CCCccc-cCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEE
Confidence 752 321 111111 22357888999999999999983 232222223333333332222332221 2346788
Q ss_pred EEe
Q 017068 369 ATK 371 (378)
Q Consensus 369 ~~K 371 (378)
|.|
T Consensus 214 a~~ 216 (262)
T PRK04457 214 AFK 216 (262)
T ss_pred EEC
Confidence 876
No 169
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.09 E-value=0.00084 Score=66.75 Aligned_cols=73 Identities=22% Similarity=0.191 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCc--c-----cccc-CChHHHHHHHhhcccCCcE
Q 017068 14 RDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRC--L-----IPFT-AYNATYLIEVDRLLRPGGY 80 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~--l-----~hw~-~~~~~~L~Ev~RVLkPGG~ 80 (378)
.|+++.|++.|+++ |+. +.+..+|+.++|+++++||+|++.-- . .+.. +.-..++.++.|+|||||+
T Consensus 210 ~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~ 289 (329)
T TIGR01177 210 CDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGW 289 (329)
T ss_pred EcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcE
Confidence 35556777766654 443 46778899999999999999998521 1 0101 1124899999999999999
Q ss_pred EEEEcC
Q 017068 81 LVISGP 86 (378)
Q Consensus 81 lvis~p 86 (378)
+++..+
T Consensus 290 lv~~~~ 295 (329)
T TIGR01177 290 IVYAVP 295 (329)
T ss_pred EEEEEc
Confidence 998876
No 170
>PTZ00146 fibrillarin; Provisional
Probab=97.08 E-value=0.0016 Score=64.51 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=52.3
Q ss_pred CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCC---CCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEE
Q 017068 5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR---LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL 81 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~---LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~l 81 (378)
.|+|++++|. .-+.+++.|+++ .++.....|+.. ++++..+||+|++... . +++...++.|+.|+|||||+|
T Consensus 159 ~VyAVD~s~r-~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-~--pdq~~il~~na~r~LKpGG~~ 233 (293)
T PTZ00146 159 VVYAVEFSHR-SGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVA-Q--PDQARIVALNAQYFLKNGGHF 233 (293)
T ss_pred EEEEEECcHH-HHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCC-C--cchHHHHHHHHHHhccCCCEE
Confidence 4888888843 223567777765 345666677643 2334568999998763 2 344436777999999999999
Q ss_pred EEEcC
Q 017068 82 VISGP 86 (378)
Q Consensus 82 vis~p 86 (378)
++...
T Consensus 234 vI~ik 238 (293)
T PTZ00146 234 IISIK 238 (293)
T ss_pred EEEEe
Confidence 99644
No 171
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.04 E-value=0.0015 Score=50.16 Aligned_cols=70 Identities=29% Similarity=0.327 Sum_probs=49.4
Q ss_pred CChHHHHHHHHH---cC--CCeEEEEcccCCCCC-CCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068 15 DSHKAQIQFALE---RG--IPAFVAMLGTRRLPF-PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 15 D~se~~vq~A~e---rg--~~~~~~v~dae~LPf-pd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis 84 (378)
|.++.+++.+++ .+ ....+...+....+. +.+.||+|++..++.++.......++.+.+.|||||.++++
T Consensus 28 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 28 DISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 344566766662 11 234556666655553 67889999999988763333348999999999999999876
No 172
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.04 E-value=0.0016 Score=63.72 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=48.5
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCCe--EEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIPA--FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 78 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~~--~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG 78 (378)
.|+++++. +.+++.|+++ ++.. .+...+ .+++.+++||+|+|+.... .-..++.++.|+||||
T Consensus 184 ~V~avDid-----~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~~----~l~~ll~~~~~~Lkpg 252 (288)
T TIGR00406 184 KVVGIDID-----PLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILAE----VIKELYPQFSRLVKPG 252 (288)
T ss_pred eEEEEECC-----HHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCHH----HHHHHHHHHHHHcCCC
Confidence 46666655 5777777775 3332 222222 3456678999999875432 1237889999999999
Q ss_pred cEEEEEcC
Q 017068 79 GYLVISGP 86 (378)
Q Consensus 79 G~lvis~p 86 (378)
|+|++++.
T Consensus 253 G~li~sgi 260 (288)
T TIGR00406 253 GWLILSGI 260 (288)
T ss_pred cEEEEEeC
Confidence 99999985
No 173
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.03 E-value=0.0011 Score=65.27 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=51.9
Q ss_pred cCCCCChHHHHHHHHHc------CCCeEEEEcccCC-CCCCCCc----eeEEEecCccccccCCh-HHHHHHHhhcccCC
Q 017068 11 FAPRDSHKAQIQFALER------GIPAFVAMLGTRR-LPFPAFS----FDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPG 78 (378)
Q Consensus 11 ~ap~D~se~~vq~A~er------g~~~~~~v~dae~-LPfpd~S----FD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPG 78 (378)
+.+.|+|++|++.|+++ ++++....+|... ++++... ..++++..++.|+...+ ..+|+++.++|+||
T Consensus 91 ~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 91 YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 44556678998888775 2344556777654 4555443 44555556676665433 47899999999999
Q ss_pred cEEEEEcC
Q 017068 79 GYLVISGP 86 (378)
Q Consensus 79 G~lvis~p 86 (378)
|.|++...
T Consensus 171 G~~lig~d 178 (301)
T TIGR03438 171 GGLLIGVD 178 (301)
T ss_pred CEEEEecc
Confidence 99998654
No 174
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.02 E-value=0.00016 Score=65.13 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=67.1
Q ss_pred eeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHh----hccc---cccccccccCCCCCCccccccccCc
Q 017068 225 IRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYD----RGLI---GVYHDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~e----RGli---g~~~~w~~~f~typrtyDliH~~~~ 295 (378)
-.+|||+|||+|-.|.+|..+. -. .|...|.. ..+..+.+ .++- -+.+|+.+.++ +..||+|-|+--
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~--~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDA--KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCE--EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCC--EEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 4569999999999988887542 21 24555654 44444332 2321 24567776655 589999998744
Q ss_pred cccccCCCCCCCCCCccceeeeecccccCCCeE--EEeCCHHHHHHHHHHHh
Q 017068 296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTV--VVRDSPEVIDKVSRIAN 345 (378)
Q Consensus 296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~--ii~d~~~~~~~~~~~~~ 345 (378)
|..-. ......+..++-+--|+|+|||.+ +++...+.-..++++..
T Consensus 108 ~~~~~----~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAGG----DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTTS----HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhccc----ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 32110 001123467888999999999987 44444444444555544
No 175
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.00 E-value=0.00065 Score=69.08 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=47.7
Q ss_pred EEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068 32 FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 32 ~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis 84 (378)
.+.+.+....||+|++||.|-+..+..|-++.. .+++|+.|||+|||+++.-
T Consensus 163 ~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~-~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 163 NFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLE-KVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ceehhhhhcCCCCccccCcEEEEeecccCCcHH-HHHHHHhcccCCCceEEeH
Confidence 456678889999999999999999999999988 9999999999999999973
No 176
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.99 E-value=0.00024 Score=68.09 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=63.3
Q ss_pred cCCCCChHHHHHHHHHcCCCeEEEEcccC-CCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 11 FAPRDSHKAQIQFALERGIPAFVAMLGTR-RLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 11 ~ap~D~se~~vq~A~erg~~~~~~v~dae-~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
+...|+|++|+++|.++|+.-.+.++++. -++ ..+..||+|++..++.+..+-+ .++.-+.+.|+|||.|.||..
T Consensus 150 ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le-~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 150 LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALE-GLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchh-hHHHHHHHhcCCCceEEEEec
Confidence 56779999999999999976555666654 233 5678999999999999988877 899999999999999999966
No 177
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.98 E-value=0.00047 Score=68.21 Aligned_cols=132 Identities=17% Similarity=0.241 Sum_probs=71.2
Q ss_pred cCCCCeeEEEecCCcceeee--eecc-CCCeeEEEeccCCCCcchHHHHhhccccccc-cccccCCCCCCccccccccCc
Q 017068 220 LGTPAIRNIMDMNAFFGGFA--AALT-SDPVWVMNVVPARKSSTLSVIYDRGLIGVYH-DWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~fa--a~L~-~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~-~w~~~f~typrtyDliH~~~~ 295 (378)
...| .+|||+|||+|=+| |+++ .+.|.-.-+-|..-.+...-+...|+-.-+. ...+.++. ..||+|-|+=+
T Consensus 159 ~~~g--~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~ 234 (295)
T PF06325_consen 159 VKPG--KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANIL 234 (295)
T ss_dssp SSTT--SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-
T ss_pred ccCC--CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCC
Confidence 3444 49999999999654 4444 2345333222221112333344445422110 01222222 78999998755
Q ss_pred cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068 296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS 372 (378)
Q Consensus 296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K~ 372 (378)
..-+ ..++=++.+.|+|||++|++.-. +..+.|.+.++. -|++.....+ +.=.-|+++|+
T Consensus 235 ~~vL------------~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 235 ADVL------------LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp HHHH------------HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred HHHH------------HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 4433 24666789999999999999743 345666666666 7777654332 23345556664
No 178
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.98 E-value=0.0042 Score=62.56 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCC----hHHHHHHHhhcccCCcEEEEEc
Q 017068 14 RDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY----NATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~----~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
.|+|+.+++.|+++ ++...+...|... ..++.||+|+|+..+|+.... ...+++++.|.|||||.|++..
T Consensus 226 vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 226 SDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred EECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 45556788777653 4555555555533 346889999998876543222 2488999999999999998876
Q ss_pred CCCCCCccchHHHH-HHHHHHHhceeeeccccceEEEe
Q 017068 86 PPVQWPKQDKEWAD-LQAVARALCYELIAVDGNTVIWK 122 (378)
Q Consensus 86 pp~~~~~~~~~w~~-l~~l~~~lcw~~~~~~~~~~iw~ 122 (378)
.. ..+ |.. ++.... ..+.+++.+...+|+
T Consensus 304 n~---~l~---y~~~l~~~Fg--~~~~la~~~~f~v~~ 333 (342)
T PRK09489 304 NA---FLP---YPDLLDETFG--SHEVLAQTGRFKVYR 333 (342)
T ss_pred eC---CCC---hHHHHHHHcC--CeEEEEeCCCEEEEE
Confidence 41 111 222 222222 236666777777775
No 179
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.97 E-value=0.00029 Score=67.66 Aligned_cols=94 Identities=14% Similarity=0.213 Sum_probs=73.8
Q ss_pred EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc-cccccccccC---CCCC-CccccccccCcccccc
Q 017068 227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GVYHDWCEPF---STYP-RTYDLIHVSGIESLIK 300 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~~~~w~~~f---~typ-rtyDliH~~~~~~~~~ 300 (378)
.|||+|||-|.++-.|...+- +|.-.|.+ ..++++-.+.+. |+.-++...- ..-. -+||.|-|.-++.+..
T Consensus 62 ~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred eEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 489999999999999998886 89999987 888888877773 4444554330 0111 5899999998888775
Q ss_pred CCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 301 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 301 ~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
+.+.++.+..+.+||||.++++.
T Consensus 139 ---------dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 139 ---------DPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred ---------CHHHHHHHHHHHcCCCcEEEEec
Confidence 23569999999999999999985
No 180
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.96 E-value=0.00052 Score=70.33 Aligned_cols=120 Identities=14% Similarity=0.081 Sum_probs=71.9
Q ss_pred eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cch----HHHHhhcc--cc-ccccccccCCCCC-CccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STL----SVIYDRGL--IG-VYHDWCEPFSTYP-RTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l----~~i~eRGl--ig-~~~~w~~~f~typ-rtyDliH~~~ 294 (378)
..+||+|||.|.|..+|..+ .. |++-.+-. ..+ .-+.++|+ +- +..|-.+-+...| .++|.|++..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~---~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK---LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC---CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 57999999999999999754 34 55666654 333 33445565 21 2334322222233 7999998752
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHH-hcCCceE
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIA-NTVRWTA 351 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~-~~l~W~~ 351 (378)
. ..|.. ....|=-....|-|+-|+|+|||.+.++ |..++.+.+.+.+ +.-+++.
T Consensus 201 P-dPW~K--krHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 201 P-VPWDK--KPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred C-CCccc--cchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 1 33421 1111222257899999999999999886 5556655554443 3335554
No 181
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.93 E-value=0.00017 Score=67.94 Aligned_cols=118 Identities=17% Similarity=0.264 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHH-----hhhhcCCCCeeEEEecCCcceeeeeeccC-CCeeEEEeccCCCCcchHHHHhh-ccccccc
Q 017068 202 SRRWRRRVAYYKNT-----LNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKSSTLSVIYDR-GLIGVYH 274 (378)
Q Consensus 202 ~~~w~~~v~~Y~~~-----~~~~~~~~~iR~vlDm~ag~g~faa~L~~-~~vwvmnv~p~~~~~~l~~i~eR-Glig~~~ 274 (378)
.+.|...+..+... +.....+.++++|+|+|+|.|.|+++++. .|=+ .++-.|.+..++.+.+. .+--+=+
T Consensus 73 ~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~rv~~~~g 150 (241)
T PF00891_consen 73 AKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEADRVEFVPG 150 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTTTEEEEES
T ss_pred HHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhccccccccccccc
Confidence 34555555554332 22346778899999999999999999963 2211 23334444434333331 1111233
Q ss_pred cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCC--CeEEEeC
Q 017068 275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPE--GTVVVRD 332 (378)
Q Consensus 275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPg--G~~ii~d 332 (378)
|.- .++|. +|++...+++..|. .+.| ..||--+-+.|+|| |.++|-|
T Consensus 151 d~f---~~~P~-~D~~~l~~vLh~~~-----d~~~--~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 151 DFF---DPLPV-ADVYLLRHVLHDWS-----DEDC--VKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp -TT---TCCSS-ESEEEEESSGGGS------HHHH--HHHHHHHHHHSEECTTEEEEEEE
T ss_pred cHH---hhhcc-ccceeeehhhhhcc-----hHHH--HHHHHHHHHHhCCCCCCeEEEEe
Confidence 333 45566 99999999999986 2334 68899999999999 9999976
No 182
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.90 E-value=0.00067 Score=62.94 Aligned_cols=88 Identities=22% Similarity=0.181 Sum_probs=52.5
Q ss_pred eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHH----Hhhcccc---cc-ccccccCCCCCCcccccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVI----YDRGLIG---VY-HDWCEPFSTYPRTYDLIHVS 293 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i----~eRGlig---~~-~~w~~~f~typrtyDliH~~ 293 (378)
..|||+|||+|.+++.|... .- .|+-.|.. ..+..+ ...|+.. ++ .|-.+.++. ..+||.|.+.
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 149 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVT 149 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEc
Confidence 46999999999998777532 22 22333433 444332 2334422 22 244343332 3689999987
Q ss_pred CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
..+... .-|+-|+|+|||.+++--
T Consensus 150 ~~~~~~---------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTI---------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchh---------------hHHHHHhcCcCcEEEEEE
Confidence 554322 236679999999998853
No 183
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.001 Score=65.98 Aligned_cols=129 Identities=15% Similarity=0.174 Sum_probs=75.4
Q ss_pred CeeEEEecCCcceeeeeeccCCCeeEEEeccCCC-CcchHHHHhhccccccc----cccccCCCCC--CccccccccCcc
Q 017068 224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARK-SSTLSVIYDRGLIGVYH----DWCEPFSTYP--RTYDLIHVSGIE 296 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~-~~~l~~i~eRGlig~~~----~w~~~f~typ--rtyDliH~~~~~ 296 (378)
+=+||||+|||+|=+|-|.++...= -|+..|- +-.++++.|.=..--.+ .-.-..+..+ +.||+|.|+= +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 5689999999999887666544320 1244553 24444444432211111 1000112233 4899999953 2
Q ss_pred ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-HHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068 297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK 371 (378)
Q Consensus 297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~~~K 371 (378)
..- +..+.=++-|.|+|||++|++.=. +..+.+.+.+.+=-|++..+-.. .|.+.+.-|
T Consensus 239 A~v-----------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~-----~eW~~i~~k 298 (300)
T COG2264 239 AEV-----------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER-----EEWVAIVGK 298 (300)
T ss_pred HHH-----------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec-----CCEEEEEEE
Confidence 111 124555778999999999999853 34666777777778888765432 455555443
No 184
>PRK14967 putative methyltransferase; Provisional
Probab=96.88 E-value=0.0044 Score=57.97 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=50.0
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCC-----------------
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY----------------- 63 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~----------------- 63 (378)
.|++++++ +.+++.|+++ +..+.+..+|... .+++++||+|+|+--..+-...
T Consensus 61 ~v~~vD~s-----~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~ 134 (223)
T PRK14967 61 SVTAVDIS-----RRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDG 134 (223)
T ss_pred eEEEEECC-----HHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcH
Confidence 45666665 4677766653 4556666677654 4678899999997422211110
Q ss_pred ---hHHHHHHHhhcccCCcEEEEEcC
Q 017068 64 ---NATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 64 ---~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
-..+++++.++|||||.+++..+
T Consensus 135 ~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 135 RAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 12577899999999999998654
No 185
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.87 E-value=0.002 Score=59.66 Aligned_cols=66 Identities=24% Similarity=0.243 Sum_probs=47.3
Q ss_pred CCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEE
Q 017068 14 RDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLV 82 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lv 82 (378)
.|.|+.+++.|+++ +. .+.+..+| ++..+++||+|+|..+++|++++. ...++++.+++++|+.+.
T Consensus 91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 91 SDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 44557888888875 22 34566655 566789999999999999988654 478889988876544433
No 186
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.79 E-value=0.00066 Score=64.11 Aligned_cols=95 Identities=9% Similarity=0.005 Sum_probs=62.9
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchH-HHHhhcccccc--------------ccccccC---CCCC-C
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLS-VIYDRGLIGVY--------------HDWCEPF---STYP-R 285 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~-~i~eRGlig~~--------------~~w~~~f---~typ-r 285 (378)
..|||.|||.|.-+.+|.+++. +|+.+|-+ .-++ +.-++|+.... +-++.-+ ++.+ .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 3899999999999999999988 77888865 4444 34577774221 0011111 1112 3
Q ss_pred ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068 286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 330 (378)
Q Consensus 286 tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii 330 (378)
+||+|-...+|..+. ...-..++-.|.++|+|||++++
T Consensus 116 ~fd~v~D~~~~~~l~-------~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALP-------EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCC-------HHHHHHHHHHHHHHcCCCCeEEE
Confidence 678877777766552 11124788999999999997544
No 187
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.78 E-value=0.0022 Score=60.83 Aligned_cols=133 Identities=15% Similarity=0.235 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHhhhh----cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-------
Q 017068 202 SRRWRRRVAYYKNTLNVK----LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL------- 269 (378)
Q Consensus 202 ~~~w~~~v~~Y~~~~~~~----~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl------- 269 (378)
+..+++.++.|++.|=.. +....==.||.+|||+|.-=-++-..|. -+|.-.|.. ++-.++ +.-.
T Consensus 50 t~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~--~svt~lDpn~~mee~~-~ks~~E~k~~~ 126 (252)
T KOG4300|consen 50 TSIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPI--NSVTCLDPNEKMEEIA-DKSAAEKKPLQ 126 (252)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCC--ceEEEeCCcHHHHHHH-HHHHhhccCcc
Confidence 467788888888665322 2333344689999999976555544443 134444544 333322 2111
Q ss_pred cc-ccccccccCCC-CCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC----HHHHHHH-HH
Q 017068 270 IG-VYHDWCEPFST-YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----PEVIDKV-SR 342 (378)
Q Consensus 270 ig-~~~~w~~~f~t-yprtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~----~~~~~~~-~~ 342 (378)
.. ..|---|.+|- -..|||.|.|.-+++.-. +-...|-|+-|||||||.+|+-+. -++++++ +.
T Consensus 127 ~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve---------~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 127 VERFVVADGENLPQLADGSYDTVVCTLVLCSVE---------DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQ 197 (252)
T ss_pred eEEEEeechhcCcccccCCeeeEEEEEEEeccC---------CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHH
Confidence 11 11222244452 237999999998887443 236799999999999999999764 3455554 33
Q ss_pred HHhc
Q 017068 343 IANT 346 (378)
Q Consensus 343 ~~~~ 346 (378)
.+..
T Consensus 198 v~ep 201 (252)
T KOG4300|consen 198 VAEP 201 (252)
T ss_pred Hhch
Confidence 3443
No 188
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.75 E-value=0.00042 Score=64.76 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=49.0
Q ss_pred eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCCCCCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~typrtyDliH~~~ 294 (378)
..|||+|||+|.+++.|... .-- |+-.|.. ..++.+-++ |+ +- +..|-.+.++ -...||.|++..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~---V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGK---VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-ENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-cCCCcCEEEECC
Confidence 58999999999999777532 222 2333323 444433332 32 11 1112111111 126899999864
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
.+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~~---------------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP---------------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc---------------cchHHHHHhhCCCcEEEEE
Confidence 432 2333556789999999885
No 189
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.71 E-value=0.0013 Score=60.26 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=58.9
Q ss_pred eEEEecCCcceeeeeeccC--CCeeEEEeccCCCC-cchHHHHh----hcc--cccc-ccccccCCCCCCccccccccCc
Q 017068 226 RNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLSVIYD----RGL--IGVY-HDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~-~~w~~~f~typrtyDliH~~~~ 295 (378)
..|+|+|||+|.++..+.. ... .|+-.|.. ..+..+-+ .|+ +-+. .|-.+.++.....+|.++..
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~---~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~-- 116 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKG---RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE-- 116 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE--
Confidence 4799999999999877642 223 34555543 44444332 243 1111 11111111111123544332
Q ss_pred cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcC
Q 017068 296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTV 347 (378)
Q Consensus 296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l 347 (378)
....+..++-++.|+|+|||.+++... .+.+..+.+..+.+
T Consensus 117 -----------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 117 -----------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred -----------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 112356889999999999999998854 34555565655554
No 190
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.67 E-value=0.0078 Score=47.25 Aligned_cols=71 Identities=31% Similarity=0.379 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHcCC--C---eEEEEcccCC--CCCCC-CceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068 14 RDSHKAQIQFALERGI--P---AFVAMLGTRR--LPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 14 ~D~se~~vq~A~erg~--~---~~~~v~dae~--LPfpd-~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
.|.+..+++.+..... . +.+...+... +||.+ ..||++ +.....++.. ....+.++.|+|+|+|.+++..
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 78 VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLP-PAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEe
Confidence 5666677776555431 1 3556666655 89988 599999 7777777666 4489999999999999999876
Q ss_pred C
Q 017068 86 P 86 (378)
Q Consensus 86 p 86 (378)
.
T Consensus 156 ~ 156 (257)
T COG0500 156 L 156 (257)
T ss_pred c
Confidence 5
No 191
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.62 E-value=0.0028 Score=52.30 Aligned_cols=78 Identities=26% Similarity=0.434 Sum_probs=53.6
Q ss_pred CCeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCC--CCCCceeEEEecCccccccCC-------hHHHH
Q 017068 4 ENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTAY-------NATYL 68 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~~~-------~~~~L 68 (378)
..++++++. +..++.|+++ +. ++.+.++|...++ +++++||+|+++--....... -..++
T Consensus 24 ~~~~gvdi~-----~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~ 98 (117)
T PF13659_consen 24 ARVTGVDID-----PEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFL 98 (117)
T ss_dssp CEEEEEESS-----HHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHH
T ss_pred CeEEEEEEC-----HHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHH
Confidence 456666666 4677777764 22 4678888887775 899999999997544432111 13789
Q ss_pred HHHhhcccCCcEEEEEcC
Q 017068 69 IEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 69 ~Ev~RVLkPGG~lvis~p 86 (378)
+++.|+|||||.+++..+
T Consensus 99 ~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 99 EAAARLLKPGGVLVFITP 116 (117)
T ss_dssp HHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHcCCCeEEEEEeC
Confidence 999999999999998654
No 192
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.56 E-value=0.0047 Score=61.64 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHcC----------CCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEE
Q 017068 15 DSHKAQIQFALERG----------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVI 83 (378)
Q Consensus 15 D~se~~vq~A~erg----------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvi 83 (378)
|+|+.|++.|+++. ..+.+.++|.+.+ +++||+|+|..+++|+++.. ...++.+.+ +.+||.++
T Consensus 173 D~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI- 247 (315)
T PLN02585 173 DISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII- 247 (315)
T ss_pred ECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-
Confidence 45568888888763 1245666665443 68999999999999988754 235555554 45655544
Q ss_pred EcC
Q 017068 84 SGP 86 (378)
Q Consensus 84 s~p 86 (378)
+..
T Consensus 248 s~~ 250 (315)
T PLN02585 248 SFA 250 (315)
T ss_pred EeC
Confidence 443
No 193
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.55 E-value=0.00073 Score=63.60 Aligned_cols=95 Identities=12% Similarity=0.029 Sum_probs=57.8
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHH-HHhhcccccc--------------ccccccCCCCC----C
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSV-IYDRGLIGVY--------------HDWCEPFSTYP----R 285 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~-i~eRGlig~~--------------~~w~~~f~typ----r 285 (378)
..|||.|||.|..|.+|.++.- +|+..|.+ .-+.. ..+.|+.... .-++.-|-.++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 4999999999999999999877 66777755 44443 3344542111 00111111111 2
Q ss_pred ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068 286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 330 (378)
Q Consensus 286 tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii 330 (378)
+||+|-...+|..+. ...-..++-.|-|.|||||++++
T Consensus 113 ~fD~i~D~~~~~~l~-------~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIALP-------EEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccCC-------HHHHHHHHHHHHHHcCCCCeEEE
Confidence 466665555555442 11124578889999999997544
No 194
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.52 E-value=0.0018 Score=59.97 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=51.1
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----ccc--c-ccccccccCCCCCCccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLI--G-VYHDWCEPFSTYPRTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli--g-~~~~w~~~f~typrtyDliH~~~~~~ 297 (378)
..|||+|||+|.+++.|....- .|.-.|.. +.+..+-++ |+- - ...|-.+.++. ..+||+|.++..+.
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~ 155 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA-YAPFDRILVTAAAP 155 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc-CCCcCEEEEccCch
Confidence 5799999999999887654421 23444443 444444332 331 1 11222222221 26899999875443
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
. +.-++-+.|+|||.+++.
T Consensus 156 ~---------------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 156 E---------------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred h---------------hhHHHHHhcCCCcEEEEE
Confidence 2 223456899999999886
No 195
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.51 E-value=0.0058 Score=59.17 Aligned_cols=128 Identities=17% Similarity=0.259 Sum_probs=81.6
Q ss_pred CCCCeeEEEecCCcceeeeeeccCC-C-eeEEEeccCCCCcchHHHHhh-----cc---ccc----cccccccCCCCCCc
Q 017068 221 GTPAIRNIMDMNAFFGGFAAALTSD-P-VWVMNVVPARKSSTLSVIYDR-----GL---IGV----YHDWCEPFSTYPRT 286 (378)
Q Consensus 221 ~~~~iR~vlDm~ag~g~faa~L~~~-~-vwvmnv~p~~~~~~l~~i~eR-----Gl---ig~----~~~w~~~f~typrt 286 (378)
.......|+|+|||.|..+-+|..+ + + -|+-++-...+---+.| ++ |-+ +.+|..++.. .+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a---~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~ 115 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKA---KIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--AS 115 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCC---cEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cc
Confidence 3345889999999999887777766 3 3 12222221111111111 22 333 3335544432 47
Q ss_pred cccccccCccccccCC---------CCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEE
Q 017068 287 YDLIHVSGIESLIKNP---------GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV 353 (378)
Q Consensus 287 yDliH~~~~~~~~~~~---------~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~ 353 (378)
||+|-|.--|-.-.+. ....-.|++++++-=--++|+|||++.+--..+.+.++-+++++++|....
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 9999998665432211 011234677777777889999999999999999999999999999999753
No 196
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.48 E-value=0.00094 Score=66.37 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=65.7
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcccc--c-cccccccCCCCCCccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIG--V-YHDWCEPFSTYPRTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig--~-~~~w~~~f~typrtyDliH~~~~~~ 297 (378)
..|||.+||+|+|...+...+. .+.-.|.. .++..+-. -|+-. + ..|-. .+|..+.+||+|-++--+.
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCCc
Confidence 3799999999999644433333 44555654 45543222 24432 1 22222 2333347899999974443
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCc
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRW 349 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W 349 (378)
.-..............+|-|+-|+|+|||++++--+... .+++++++--|
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~ 309 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR 309 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc
Confidence 211000000112246789999999999999877644321 44455666666
No 197
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.47 E-value=0.0011 Score=64.49 Aligned_cols=90 Identities=19% Similarity=0.383 Sum_probs=68.5
Q ss_pred CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc--ccccccccccCCCCCCccccccccCcccccc
Q 017068 224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL--IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 300 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl--ig~~~~w~~~f~typrtyDliH~~~~~~~~~ 300 (378)
+..++||+|||-|+-.+.|...= =.|..++.+ .+.--.-+||+ +. ..+|.+. +..||+|-|-.++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~kg~~vl~-~~~w~~~----~~~fDvIscLNvLD--- 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKKGFTVLD-IDDWQQT----DFKFDVISCLNVLD--- 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhCCCeEEe-hhhhhcc----CCceEEEeehhhhh---
Confidence 56789999999999999886521 145777776 67777888999 33 3448753 46799999866554
Q ss_pred CCCCCCCCCCc-cceeeeecccccCCCeEEEe
Q 017068 301 NPGSNKNSCSL-VDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 301 ~~~~~~~~c~~-~~~l~EmDRiLRPgG~~ii~ 331 (378)
||.- ..+|-+|-+.|+|+|.+|+.
T Consensus 163 -------Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 -------RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -------ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 6653 46888999999999999995
No 198
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.47 E-value=0.011 Score=56.58 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=57.2
Q ss_pred CCeEEEecCCCCChHHHHHHHHH-----------------cCCCeEEEEcccCCCCCC---CCceeEEEecCccccccCC
Q 017068 4 ENILTLSFAPRDSHKAQIQFALE-----------------RGIPAFVAMLGTRRLPFP---AFSFDIVHCSRCLIPFTAY 63 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~e-----------------rg~~~~~~v~dae~LPfp---d~SFD~V~cs~~l~hw~~~ 63 (378)
.+|++++++| ..|+.+.+ ++..+.+.++|.-.++.+ -+.||+|.=..++++++..
T Consensus 66 ~~V~GvDlS~-----~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~ 140 (226)
T PRK13256 66 VKVIGIELSE-----KAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPND 140 (226)
T ss_pred CcEEEEecCH-----HHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHH
Confidence 4577777775 45555433 245678889998888743 2689999888888888765
Q ss_pred h-HHHHHHHhhcccCCcEEEEE
Q 017068 64 N-ATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 64 ~-~~~L~Ev~RVLkPGG~lvis 84 (378)
. .+..+.+.++|+|||.+++-
T Consensus 141 ~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 141 LRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred HHHHHHHHHHHHhCCCcEEEEE
Confidence 4 58999999999999998864
No 199
>PRK14968 putative methyltransferase; Provisional
Probab=96.46 E-value=0.021 Score=50.79 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=46.9
Q ss_pred CChHHHHHHHHHc----CCC---eEEEEcccCCCCCCCCceeEEEecCccccccC--------------------ChHHH
Q 017068 15 DSHKAQIQFALER----GIP---AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA--------------------YNATY 67 (378)
Q Consensus 15 D~se~~vq~A~er----g~~---~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~--------------------~~~~~ 67 (378)
|.|+.+++.|+++ +.. +.+...|... ++++++||+|+++.-+.+... .-..+
T Consensus 52 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (188)
T PRK14968 52 DINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRF 130 (188)
T ss_pred ECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHH
Confidence 4456777777554 332 5566666544 567779999998754432110 01257
Q ss_pred HHHHhhcccCCcEEEEEcC
Q 017068 68 LIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 68 L~Ev~RVLkPGG~lvis~p 86 (378)
++++.++|||||.+++..+
T Consensus 131 i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 131 LDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHhcCCCeEEEEEEc
Confidence 8999999999999988655
No 200
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.45 E-value=0.006 Score=56.98 Aligned_cols=69 Identities=14% Similarity=0.033 Sum_probs=50.4
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 79 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG 79 (378)
.|+++++. +.+++.|+++ +. ++.+..+|+...+.+++.||+|++.....+ ...++.+.|||||
T Consensus 103 ~V~~vE~~-----~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG 170 (212)
T PRK13942 103 KVVTIERI-----PELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGG 170 (212)
T ss_pred EEEEEeCC-----HHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCc
Confidence 45666655 5778777765 44 367888888777777899999998765533 2356778999999
Q ss_pred EEEEEc
Q 017068 80 YLVISG 85 (378)
Q Consensus 80 ~lvis~ 85 (378)
.+++..
T Consensus 171 ~lvi~~ 176 (212)
T PRK13942 171 IMVIPV 176 (212)
T ss_pred EEEEEE
Confidence 999853
No 201
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.44 E-value=0.00014 Score=60.21 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=56.2
Q ss_pred EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc-------ccccccccccCCCCCCccccccccC
Q 017068 227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL-------IGVYHDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-------ig~~~~w~~~f~typrtyDliH~~~ 294 (378)
.|||+|||.|.|+.++.... .-++.-.|-. ..+.++-. .|+ .|-+.+..+.++ +..||+|-++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP--DGKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT--TT-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc--CceeEEEEECC
Confidence 69999999999999887664 2255555544 33332221 111 121222222232 38899999988
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 330 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii 330 (378)
-|........... -....++-++.|+|||||.+++
T Consensus 79 P~~~~~~~~~~~~-~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAALR-RLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT----GG-CHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchhhH-HHHHHHHHHHHHHcCCCeEEEE
Confidence 7764421111111 1335678899999999999976
No 202
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.41 E-value=0.02 Score=53.53 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=50.3
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCcccc------ccCC----------
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIP------FTAY---------- 63 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~h------w~~~---------- 63 (378)
.|+++++ ++.+++.|+++ +.. +.+..+|... ++++++||+|+|+--... +...
T Consensus 113 ~v~~iD~-----~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~ 186 (251)
T TIGR03534 113 RVTAVDI-----SPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLAL 186 (251)
T ss_pred EEEEEEC-----CHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHH
Confidence 4555554 46777777654 444 5677777755 678899999998532211 1100
Q ss_pred ---------hHHHHHHHhhcccCCcEEEEEcC
Q 017068 64 ---------NATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 64 ---------~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
-...+.++.|+|+|||.+++...
T Consensus 187 ~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 187 FGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred cCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 02568899999999999998653
No 203
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.41 E-value=0.0066 Score=62.87 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=58.5
Q ss_pred eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHh----hccc--c-ccccccccCCCCCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGLI--G-VYHDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~e----RGli--g-~~~~w~~~f~typrtyDliH~~~ 294 (378)
.+|||+|||.|+++.++... +- .|+..|.. ..++.+-+ .|+- - +..|..+....++.+||+|-++-
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~---~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTG---KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 57999999999999887643 22 34555654 55554433 2431 1 22344433233458899987653
Q ss_pred ccccc----cCCCCCC--CCCCc-------cceeeeecccccCCCeEEEe
Q 017068 295 IESLI----KNPGSNK--NSCSL-------VDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 295 ~~~~~----~~~~~~~--~~c~~-------~~~l~EmDRiLRPgG~~ii~ 331 (378)
-.+.. ..|+..- ....+ ..+|-+.=|+|+|||.+|++
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 21110 0011000 00011 24788889999999999986
No 204
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.0053 Score=61.97 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=57.2
Q ss_pred EEEecCCCCChHHHHHHHHHc----CCC-eE-EEEcccCCCCCCCCceeEEEecC-----ccccccC---ChHHHHHHHh
Q 017068 7 LTLSFAPRDSHKAQIQFALER----GIP-AF-VAMLGTRRLPFPAFSFDIVHCSR-----CLIPFTA---YNATYLIEVD 72 (378)
Q Consensus 7 ~~ms~ap~D~se~~vq~A~er----g~~-~~-~~v~dae~LPfpd~SFD~V~cs~-----~l~hw~~---~~~~~L~Ev~ 72 (378)
.+...-..|+.+.|++-|+.+ ++. .. +.+.|+.++||++++||+|.|-- +-..-.. --..++.++.
T Consensus 218 ~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~ 297 (347)
T COG1041 218 MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESAS 297 (347)
T ss_pred cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHH
Confidence 344455668889999999886 322 22 34459999999999999998731 0001011 1137899999
Q ss_pred hcccCCcEEEEEcC
Q 017068 73 RLLRPGGYLVISGP 86 (378)
Q Consensus 73 RVLkPGG~lvis~p 86 (378)
+|||+||++++..|
T Consensus 298 evLk~gG~~vf~~p 311 (347)
T COG1041 298 EVLKPGGRIVFAAP 311 (347)
T ss_pred HHhhcCcEEEEecC
Confidence 99999999999887
No 205
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.40 E-value=0.0069 Score=55.66 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=49.1
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCC-CCCCCCceeEEEecCccccccCChHHHHHHHhhcccC
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP 77 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP 77 (378)
.|+++++. +.+++.|+++ ++ .+.+..+|+.. ++..++.||.|++.. ...+.. .+++++.|+|||
T Consensus 67 ~v~avD~~-----~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---~~~~~~-~~l~~~~~~Lkp 137 (198)
T PRK00377 67 KVYAVDKD-----EKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG---GSEKLK-EIISASWEIIKK 137 (198)
T ss_pred EEEEEECC-----HHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC---CcccHH-HHHHHHHHHcCC
Confidence 35666665 4677766554 42 35566667654 444457899999843 222333 899999999999
Q ss_pred CcEEEEEcC
Q 017068 78 GGYLVISGP 86 (378)
Q Consensus 78 GG~lvis~p 86 (378)
||++++...
T Consensus 138 gG~lv~~~~ 146 (198)
T PRK00377 138 GGRIVIDAI 146 (198)
T ss_pred CcEEEEEee
Confidence 999998554
No 206
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.36 E-value=0.0088 Score=61.65 Aligned_cols=82 Identities=18% Similarity=0.148 Sum_probs=52.1
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCCeEE--EEcccCCCCC--CCCceeEEEe----c-Cc-cccccC-----C--
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIPAFV--AMLGTRRLPF--PAFSFDIVHC----S-RC-LIPFTA-----Y-- 63 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~--~v~dae~LPf--pd~SFD~V~c----s-~~-l~hw~~-----~-- 63 (378)
.|+++++. +.+++.++++ |+.+.+ ..+|+..+++ ++++||.|++ + .. +.+-++ .
T Consensus 264 ~v~a~D~~-----~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~ 338 (426)
T TIGR00563 264 QVVALDIH-----EHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPR 338 (426)
T ss_pred eEEEEeCC-----HHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHH
Confidence 45666555 5666666554 655333 4556655554 6789999984 2 22 222222 1
Q ss_pred --------hHHHHHHHhhcccCCcEEEEEcCCCCCC
Q 017068 64 --------NATYLIEVDRLLRPGGYLVISGPPVQWP 91 (378)
Q Consensus 64 --------~~~~L~Ev~RVLkPGG~lvis~pp~~~~ 91 (378)
...+|.++.|+|||||++++++-.....
T Consensus 339 ~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~ 374 (426)
T TIGR00563 339 DIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE 374 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 2379999999999999999987644433
No 207
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.32 E-value=0.015 Score=59.97 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=53.3
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCC--CCCCceeEEE----ecCcc-------ccccCC----
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP--FPAFSFDIVH----CSRCL-------IPFTAY---- 63 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LP--fpd~SFD~V~----cs~~l-------~hw~~~---- 63 (378)
.|+++++. +.+++.++++ |+.+.+..+|+..++ +++++||.|+ |+..- ..|...
T Consensus 270 ~v~a~D~s-----~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l 344 (427)
T PRK10901 270 QVVALDID-----AQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDI 344 (427)
T ss_pred EEEEEeCC-----HHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHH
Confidence 45555555 5777666554 566677788887765 4578899998 43211 112111
Q ss_pred ------hHHHHHHHhhcccCCcEEEEEcCCCCC
Q 017068 64 ------NATYLIEVDRLLRPGGYLVISGPPVQW 90 (378)
Q Consensus 64 ------~~~~L~Ev~RVLkPGG~lvis~pp~~~ 90 (378)
...+|.++.++|||||++++++-....
T Consensus 345 ~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 345 AALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 126899999999999999998753333
No 208
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.28 E-value=0.0026 Score=63.28 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=70.7
Q ss_pred hhhhcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCCcchHHHHhhcccccccc-cc-----ccCCCCCCccc
Q 017068 216 LNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVIYDRGLIGVYHD-WC-----EPFSTYPRTYD 288 (378)
Q Consensus 216 ~~~~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~~-w~-----~~f~typrtyD 288 (378)
+.+.+..=+=|.|||+|||.|-|.=.|+.+ +-.|+-+-|..- ..+|+-+-+-++|.-.. .. |.+|. ..+||
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FD 184 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFD 184 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcC
Confidence 333333334579999999999998777755 445555555332 44566665666653211 12 22455 68999
Q ss_pred cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
+|-|.+++-+.. +--..|.++-..|||||-+|+.
T Consensus 185 tVF~MGVLYHrr---------~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 185 TVFSMGVLYHRR---------SPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred EEEEeeehhccC---------CHHHHHHHHHHhhCCCCEEEEE
Confidence 999999987543 3357888999999999999975
No 209
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.26 E-value=0.012 Score=53.24 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=48.0
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 79 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG 79 (378)
.|++++++ +.+++.|+++ ++ .+.+..+++. .+++ ++||+|++.....+ .. ..++++.++|+|||
T Consensus 57 ~v~~vD~s-----~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~~~~---~~-~~l~~~~~~Lk~gG 125 (187)
T PRK08287 57 QVTAIERN-----PDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGSGGN---LT-AIIDWSLAHLHPGG 125 (187)
T ss_pred EEEEEECC-----HHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCCccC---HH-HHHHHHHHhcCCCe
Confidence 46666666 4667776653 33 3455556653 3454 68999998765432 23 78899999999999
Q ss_pred EEEEEcC
Q 017068 80 YLVISGP 86 (378)
Q Consensus 80 ~lvis~p 86 (378)
++++...
T Consensus 126 ~lv~~~~ 132 (187)
T PRK08287 126 RLVLTFI 132 (187)
T ss_pred EEEEEEe
Confidence 9998653
No 210
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.25 E-value=0.015 Score=52.76 Aligned_cols=71 Identities=11% Similarity=0.014 Sum_probs=46.2
Q ss_pred CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCC--------CCCCceeEEEecCccc---cccC-C------hHH
Q 017068 5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPAFSFDIVHCSRCLI---PFTA-Y------NAT 66 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LP--------fpd~SFD~V~cs~~l~---hw~~-~------~~~ 66 (378)
.|++++++|.. ....+.+..+|....+ +++++||+|+|..+.. +|.. . ...
T Consensus 59 ~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~ 127 (188)
T TIGR00438 59 RVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVEL 127 (188)
T ss_pred eEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHH
Confidence 47888887632 1123455566665543 6788999999864321 1211 1 137
Q ss_pred HHHHHhhcccCCcEEEEEcC
Q 017068 67 YLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 67 ~L~Ev~RVLkPGG~lvis~p 86 (378)
++.++.++|+|||++++...
T Consensus 128 ~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 128 ALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHHHccCCCEEEEEEc
Confidence 89999999999999999653
No 211
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.24 E-value=0.014 Score=60.32 Aligned_cols=75 Identities=24% Similarity=0.250 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHc----CCC-eEEEEcccCCCC----CCCCceeEEEe----cC--ccccccCC---------------h
Q 017068 15 DSHKAQIQFALER----GIP-AFVAMLGTRRLP----FPAFSFDIVHC----SR--CLIPFTAY---------------N 64 (378)
Q Consensus 15 D~se~~vq~A~er----g~~-~~~~v~dae~LP----fpd~SFD~V~c----s~--~l~hw~~~---------------~ 64 (378)
|.++.+++.++++ |+. +.+..+|+..++ +.+++||.|++ +- ++.+-++. .
T Consensus 284 D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q 363 (434)
T PRK14901 284 DRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQ 363 (434)
T ss_pred cCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHH
Confidence 4456777666554 553 567778887776 66789999985 21 22222220 2
Q ss_pred HHHHHHHhhcccCCcEEEEEcCCCC
Q 017068 65 ATYLIEVDRLLRPGGYLVISGPPVQ 89 (378)
Q Consensus 65 ~~~L~Ev~RVLkPGG~lvis~pp~~ 89 (378)
...|.++.++|||||++++++-..+
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 3779999999999999998875443
No 212
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.13 E-value=0.0067 Score=62.91 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=51.7
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEe----cCc--cc-----cccC------
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHC----SRC--LI-----PFTA------ 62 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~c----s~~--l~-----hw~~------ 62 (378)
.|+++++. +.+++.|+++ |+. +.+..+|+..++ ++++||+|++ +-. +. .|..
T Consensus 277 ~V~avD~s-----~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~ 350 (445)
T PRK14904 277 QITAVDRY-----PQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLA 350 (445)
T ss_pred EEEEEECC-----HHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHH
Confidence 35555554 5777666554 554 567778887765 6789999985 211 10 1111
Q ss_pred ----ChHHHHHHHhhcccCCcEEEEEcCCCC
Q 017068 63 ----YNATYLIEVDRLLRPGGYLVISGPPVQ 89 (378)
Q Consensus 63 ----~~~~~L~Ev~RVLkPGG~lvis~pp~~ 89 (378)
....+|.++.++|||||++++++-...
T Consensus 351 ~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 351 ELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 122589999999999999999876443
No 213
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.0062 Score=63.72 Aligned_cols=80 Identities=28% Similarity=0.272 Sum_probs=57.8
Q ss_pred CCCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChH---------HHHHHHhh
Q 017068 3 SENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA---------TYLIEVDR 73 (378)
Q Consensus 3 ~~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~---------~~L~Ev~R 73 (378)
.++|+.+++++.++...++..|+++ .-..+..+|...+.|+|+|||+|+---.+.+...++. ..+.|+.|
T Consensus 71 ~~dI~~iD~S~V~V~~m~~~~~~~~-~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsr 149 (482)
T KOG2352|consen 71 FEDITNIDSSSVVVAAMQVRNAKER-PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSR 149 (482)
T ss_pred CCCceeccccHHHHHHHHhccccCC-cceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHH
Confidence 4678888777765555555444332 2245677899999999999999997777766544332 45689999
Q ss_pred cccCCcEEEE
Q 017068 74 LLRPGGYLVI 83 (378)
Q Consensus 74 VLkPGG~lvi 83 (378)
||+|||+++.
T Consensus 150 vl~~~gk~~s 159 (482)
T KOG2352|consen 150 VLAPGGKYIS 159 (482)
T ss_pred HhccCCEEEE
Confidence 9999998764
No 214
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.01 E-value=0.0052 Score=59.85 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=63.9
Q ss_pred CCeeEEEecCCcceeeeeeccCCCeeE------EEeccCCC-CcchHHHHhhccc-cccc----cccc----cCCCCC-C
Q 017068 223 PAIRNIMDMNAFFGGFAAALTSDPVWV------MNVVPARK-SSTLSVIYDRGLI-GVYH----DWCE----PFSTYP-R 285 (378)
Q Consensus 223 ~~iR~vlDm~ag~g~faa~L~~~~vwv------mnv~p~~~-~~~l~~i~eRGli-g~~~----~w~~----~f~typ-r 285 (378)
+.-=.+|||+||+|=.|=.+++. |-. =+|.-.|- +.||.+...|-.- +..- -|-+ .+| || .
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~ 176 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDD 176 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCC
Confidence 34467999999999655444422 111 23444554 4888776666531 1222 2433 366 45 8
Q ss_pred ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 286 tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
+||+.-.+.-.-++. .+...|-|+-|||+|||-|.+-+
T Consensus 177 s~D~yTiafGIRN~t---------h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVT---------HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred cceeEEEecceecCC---------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999987765555444 35789999999999999998765
No 215
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=95.98 E-value=0.014 Score=55.96 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHHcCCCeEEEEcc-cCCCCCCCCceeEEEecCcccccc--------CCh---HHHHHHHhhcccCCcEE
Q 017068 14 RDSHKAQIQFALERGIPAFVAMLG-TRRLPFPAFSFDIVHCSRCLIPFT--------AYN---ATYLIEVDRLLRPGGYL 81 (378)
Q Consensus 14 ~D~se~~vq~A~erg~~~~~~v~d-ae~LPfpd~SFD~V~cs~~l~hw~--------~~~---~~~L~Ev~RVLkPGG~l 81 (378)
.|+|..|++.|.++-+...+..+| .+-|||+.++||.|++..++ +|. ++. ..++.-++.+|++|+..
T Consensus 78 vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~ra 156 (270)
T KOG1541|consen 78 VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARA 156 (270)
T ss_pred ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCcee
Confidence 356669999999875554444444 38999999999999977654 663 111 13566789999999999
Q ss_pred EEEcC
Q 017068 82 VISGP 86 (378)
Q Consensus 82 vis~p 86 (378)
++-.-
T Consensus 157 V~QfY 161 (270)
T KOG1541|consen 157 VLQFY 161 (270)
T ss_pred EEEec
Confidence 98654
No 216
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.90 E-value=0.02 Score=53.30 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=48.8
Q ss_pred eEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068 6 ILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY 80 (378)
Q Consensus 6 v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~ 80 (378)
|+++++. +.+++.|+++ ++ ++.+..+|+.......+.||+|++..+.. ....++.+.|+|||+
T Consensus 105 V~~vD~~-----~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~-------~~~~~~~~~L~~gG~ 172 (215)
T TIGR00080 105 VVSIERI-----PELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP-------KIPEALIDQLKEGGI 172 (215)
T ss_pred EEEEeCC-----HHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc-------cccHHHHHhcCcCcE
Confidence 6666665 5777777664 44 36677788766555567899999876543 334678899999999
Q ss_pred EEEEc
Q 017068 81 LVISG 85 (378)
Q Consensus 81 lvis~ 85 (378)
+++..
T Consensus 173 lv~~~ 177 (215)
T TIGR00080 173 LVMPV 177 (215)
T ss_pred EEEEE
Confidence 99864
No 217
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.89 E-value=0.013 Score=55.19 Aligned_cols=64 Identities=22% Similarity=0.190 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCC--cEEEEEcC
Q 017068 19 AQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPG--GYLVISGP 86 (378)
Q Consensus 19 ~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPG--G~lvis~p 86 (378)
..++.|++ .-.+.+..+|.. -|+|. +|+++.++++|+|++.. ..+|+.+.+.|+|| |+++|...
T Consensus 134 ~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 134 EVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 55666666 345677778876 67887 99999999999999876 68999999999999 99999765
No 218
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.87 E-value=0.0061 Score=58.25 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=43.6
Q ss_pred eEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068 6 ILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 6 v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
|+++++. +.+++.|+++.....+ .+...++..+.+||+|+|+... +.-...+.++.|+|||||++++++
T Consensus 145 v~giDis-----~~~l~~A~~n~~~~~~--~~~~~~~~~~~~fD~Vvani~~----~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 145 VLAVDID-----PQAVEAARENAELNGV--ELNVYLPQGDLKADVIVANILA----NPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred EEEEECC-----HHHHHHHHHHHHHcCC--CceEEEccCCCCcCEEEEcCcH----HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5555554 6888888775211000 0111123333489999986432 112377899999999999999987
Q ss_pred C
Q 017068 86 P 86 (378)
Q Consensus 86 p 86 (378)
.
T Consensus 214 i 214 (250)
T PRK00517 214 I 214 (250)
T ss_pred C
Confidence 5
No 219
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.85 E-value=0.015 Score=56.14 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHcCC------CeEEEEcccC--CCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEc
Q 017068 15 DSHKAQIQFALERGI------PAFVAMLGTR--RLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 15 D~se~~vq~A~erg~------~~~~~v~dae--~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~ 85 (378)
|.|...|++-+++.. .+.+..++.. .-|.+.+++|+|++-+++.-.+... ..++.+++|+|||||.+++..
T Consensus 104 Dfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 104 DFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred CCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 444567777776521 1222233333 4468899999999999887765543 689999999999999999975
Q ss_pred C
Q 017068 86 P 86 (378)
Q Consensus 86 p 86 (378)
-
T Consensus 184 Y 184 (264)
T KOG2361|consen 184 Y 184 (264)
T ss_pred c
Confidence 4
No 220
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.81 E-value=0.0054 Score=63.20 Aligned_cols=103 Identities=22% Similarity=0.206 Sum_probs=56.1
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH---hh-cccc----ccccccccCCC--CCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---DR-GLIG----VYHDWCEPFST--YPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~---eR-Glig----~~~~w~~~f~t--yprtyDliH~~~ 294 (378)
.+|||||||.|+++.++...-- .-.|+..|.+ ..+..+- +| |+-- +-.|... .+. .+.+||.|.++-
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~-~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRG-PSQWAENEQFDRILLDA 317 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccc-ccccccccccCEEEEcC
Confidence 5899999999999988764310 1134555654 5554433 32 4310 1112211 111 236899998642
Q ss_pred ccc---cc-cCCCCCCCCCC----------ccceeeeecccccCCCeEEEe
Q 017068 295 IES---LI-KNPGSNKNSCS----------LVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 295 ~~~---~~-~~~~~~~~~c~----------~~~~l~EmDRiLRPgG~~ii~ 331 (378)
-.| .+ ..|+.. ++=. -..+|-++=|+|||||.+|++
T Consensus 318 PcSg~G~~~~~p~~~-~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 318 PCSATGVIRRHPDIK-WLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred CCCCCcccccCcchh-hcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 111 11 101100 0000 136888999999999999998
No 221
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.80 E-value=0.016 Score=56.55 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=52.2
Q ss_pred cCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068 11 FAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 11 ~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis 84 (378)
+..++.|..|...-++||..+. +.....-.+..||+|.|..++=.-.++. ..|+++++.|+|+|.++++
T Consensus 119 v~aTE~S~~Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNvLDRc~~P~-~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 119 VYATEASPPMRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNVLDRCDRPL-TLLRDIRRALKPNGRLILA 187 (265)
T ss_pred EEeecCCHHHHHHHHhCCCeEE----ehhhhhccCCceEEEeehhhhhccCCHH-HHHHHHHHHhCCCCEEEEE
Confidence 3456778899988889987543 3333333467899999998875544444 9999999999999999986
No 222
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=95.78 E-value=0.038 Score=53.08 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=85.9
Q ss_pred cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcccc--ccccccccCCCCCCccccccccCcc
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIG--VYHDWCEPFSTYPRTYDLIHVSGIE 296 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig--~~~~w~~~f~typrtyDliH~~~~~ 296 (378)
+..+.=+-|||+|||+|--|+.|.+..- -.+=.|.+ .+|.++.+|-+-| ++.|--|.+|+-|-|||=+-.-.-
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA- 121 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA- 121 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee-
Confidence 5555788999999999999999987763 12334544 9999999977765 566777999988999996543221
Q ss_pred ccccCCCCCCCCCCcc-----------ceeeeecccccCCCeEEEe---CCHHHHHHHHHHHhcCCceEE-EecCCCCCC
Q 017068 297 SLIKNPGSNKNSCSLV-----------DLMVEMDRMLRPEGTVVVR---DSPEVIDKVSRIANTVRWTAA-VHDKEPGSN 361 (378)
Q Consensus 297 ~~~~~~~~~~~~c~~~-----------~~l~EmDRiLRPgG~~ii~---d~~~~~~~~~~~~~~l~W~~~-~~~~~~~~~ 361 (378)
.. +-||-. ...--.=..|.+|+-.+++ ++.+.++.|..-|..--..-. ++|.-....
T Consensus 122 --vQ------WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k 193 (270)
T KOG1541|consen 122 --VQ------WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTK 193 (270)
T ss_pred --ee------eecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccc
Confidence 11 333321 1222345778899999988 444555666554443333322 234322333
Q ss_pred CCeEEEEE
Q 017068 362 GREKILVA 369 (378)
Q Consensus 362 ~~e~~l~~ 369 (378)
++.-+||-
T Consensus 194 ~kK~yLVL 201 (270)
T KOG1541|consen 194 NKKYYLVL 201 (270)
T ss_pred cceeEEEE
Confidence 44444444
No 223
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.76 E-value=0.03 Score=55.23 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=54.7
Q ss_pred CCeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhccc
Q 017068 4 ENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLR 76 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLk 76 (378)
-+|++++++ ++|.+.|++| |.. +.+...| .+..++.||-|++.-+++|+.... ..+++-+.++|+
T Consensus 96 v~V~GvTlS-----~~Q~~~~~~r~~~~gl~~~v~v~l~d---~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~ 167 (283)
T COG2230 96 VTVVGVTLS-----EEQLAYAEKRIAARGLEDNVEVRLQD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLK 167 (283)
T ss_pred CEEEEeeCC-----HHHHHHHHHHHHHcCCCcccEEEecc---ccccccccceeeehhhHHHhCcccHHHHHHHHHhhcC
Confidence 456666655 6888887774 655 3343333 343445599999999999997732 599999999999
Q ss_pred CCcEEEEEcC
Q 017068 77 PGGYLVISGP 86 (378)
Q Consensus 77 PGG~lvis~p 86 (378)
|||.+++.+-
T Consensus 168 ~~G~~llh~I 177 (283)
T COG2230 168 PGGRMLLHSI 177 (283)
T ss_pred CCceEEEEEe
Confidence 9999998654
No 224
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.72 E-value=0.0084 Score=47.07 Aligned_cols=93 Identities=22% Similarity=0.266 Sum_probs=56.4
Q ss_pred EEecCCccee--eeeeccCCCeeEEEeccCCCC-cchHHHHhhc-------cccccccccc-cCCCCC-CccccccccCc
Q 017068 228 IMDMNAFFGG--FAAALTSDPVWVMNVVPARKS-STLSVIYDRG-------LIGVYHDWCE-PFSTYP-RTYDLIHVSGI 295 (378)
Q Consensus 228 vlDm~ag~g~--faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG-------lig~~~~w~~-~f~typ-rtyDliH~~~~ 295 (378)
++|+|||.|. +.+.+......+.. .+.. .++.....+. +-....+... .++.-. .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 45555554433333 3433 3343322222 1223333333 133322 389999 7666
Q ss_pred cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068 296 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 333 (378)
Q Consensus 296 ~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~ 333 (378)
...+. . ...++-|+-|+|+|+|.+++...
T Consensus 128 ~~~~~------~---~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 VLHLL------P---PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred ehhcC------C---HHHHHHHHHHhcCCCcEEEEEec
Confidence 55443 1 57899999999999999999864
No 225
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.70 E-value=0.026 Score=50.72 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCC-----hHHHHHHHhhcccCCcEEEEE
Q 017068 15 DSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-----NATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 15 D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~-----~~~~L~Ev~RVLkPGG~lvis 84 (378)
|+++.+++.|++. ++. +.+...|... ++++++||+|+|+-=+ |.... ....+++..+.|||||.|++.
T Consensus 62 Di~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~-~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 62 DINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPF-HAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp ESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---S-BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccch-hcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 4456778887763 555 6666666532 4558999999997432 22222 247899999999999999765
Q ss_pred cC
Q 017068 85 GP 86 (378)
Q Consensus 85 ~p 86 (378)
..
T Consensus 140 ~~ 141 (170)
T PF05175_consen 140 IN 141 (170)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 226
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.67 E-value=0.029 Score=58.22 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=53.4
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCC-CCCCceeEEEecC-c--cccccC-------------
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP-FPAFSFDIVHCSR-C--LIPFTA------------- 62 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LP-fpd~SFD~V~cs~-~--l~hw~~------------- 62 (378)
.|+++++. +.+++.++++ |+. +.+..+|+..++ +.+++||.|++.- | +-.+..
T Consensus 264 ~V~a~Dis-----~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~ 338 (431)
T PRK14903 264 KILAVDIS-----REKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDF 338 (431)
T ss_pred EEEEEECC-----HHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHH
Confidence 45666555 5777766654 554 567788888777 6678999998520 1 111111
Q ss_pred -----ChHHHHHHHhhcccCCcEEEEEcCCCCC
Q 017068 63 -----YNATYLIEVDRLLRPGGYLVISGPPVQW 90 (378)
Q Consensus 63 -----~~~~~L~Ev~RVLkPGG~lvis~pp~~~ 90 (378)
...+.|.++.+.|||||++++++-....
T Consensus 339 ~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 339 KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 1135689999999999999998764433
No 227
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.64 E-value=0.028 Score=57.54 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=47.6
Q ss_pred CCChHHHHHHHHHc----CC----CeEEEEcccCCCCCCCCceeEEEecCccccc---cCC-hHHHHHHHhhcccCCcEE
Q 017068 14 RDSHKAQIQFALER----GI----PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF---TAY-NATYLIEVDRLLRPGGYL 81 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~----~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw---~~~-~~~~L~Ev~RVLkPGG~l 81 (378)
.|.|+.+++.|+++ +. .+.+...|... .+++++||+|+|+--++.- .+. ..+.++++.|+|||||.|
T Consensus 258 vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L 336 (378)
T PRK15001 258 VDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL 336 (378)
T ss_pred EECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEE
Confidence 45567888888874 22 23455555422 2456789999998655322 111 137889999999999999
Q ss_pred EEEc
Q 017068 82 VISG 85 (378)
Q Consensus 82 vis~ 85 (378)
++..
T Consensus 337 ~iV~ 340 (378)
T PRK15001 337 YIVA 340 (378)
T ss_pred EEEE
Confidence 9875
No 228
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.62 E-value=0.014 Score=56.45 Aligned_cols=107 Identities=12% Similarity=0.203 Sum_probs=58.0
Q ss_pred cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-----c-c----ccc-cccccccCCCCCCcc
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-----G-L----IGV-YHDWCEPFSTYPRTY 287 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-----G-l----ig~-~~~w~~~f~typrty 287 (378)
+...+-++||++|||.|+++..+++.+- +.+++-++.. +.+..+-+. | + +-+ ..|-.+-+...+++|
T Consensus 68 ~~~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 68 FTHPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred hcCCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 3444566999999999999988876541 1234444443 333333221 0 0 001 111111112235789
Q ss_pred ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
|+|-++.... .. +....-....+-.+-|+|+|||.+++..
T Consensus 147 DvIi~D~~~~-~~----~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 147 DVIIVDSTDP-VG----PAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred cEEEEeCCCC-CC----cccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9998764321 11 1111001345567889999999999863
No 229
>PRK01581 speE spermidine synthase; Validated
Probab=95.57 E-value=0.017 Score=58.92 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=82.2
Q ss_pred HHHHhh--hhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-ccc----c---------ccc
Q 017068 212 YKNTLN--VKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-GLI----G---------VYH 274 (378)
Q Consensus 212 Y~~~~~--~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-Gli----g---------~~~ 274 (378)
|-+.|. ++....+-++||++|||.|+.+..++..+- +-+|+-++-. ..++++-+. .|. | +..
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~ 214 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC 214 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEEC
Confidence 444443 234556778999999999998887877641 2355666654 556655531 110 0 112
Q ss_pred cccccCCCCCCccccccccCccccccCCCCC-CCCCCccceeeeecccccCCCeEEEeCCH-----HHHHHHHHHHhcCC
Q 017068 275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSN-KNSCSLVDLMVEMDRMLRPEGTVVVRDSP-----EVIDKVSRIANTVR 348 (378)
Q Consensus 275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~-~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-----~~~~~~~~~~~~l~ 348 (378)
|-.+-+..-++.||+|-++-. +|... ..+---...+-.+-|.|+|||.++..... .....+.+..++.-
T Consensus 215 Da~~fL~~~~~~YDVIIvDl~-----DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af 289 (374)
T PRK01581 215 DAKEFLSSPSSLYDVIIIDFP-----DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAG 289 (374)
T ss_pred cHHHHHHhcCCCccEEEEcCC-----CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhC
Confidence 222212233468999988721 11110 01111134667889999999999887541 22233333333333
Q ss_pred ceEEEecCCCCCCC-CeEEEEEEecCC
Q 017068 349 WTAAVHDKEPGSNG-REKILVATKSLW 374 (378)
Q Consensus 349 W~~~~~~~~~~~~~-~e~~l~~~K~~w 374 (378)
-.+..+.+--.+.+ .=.+.+|.|.-.
T Consensus 290 ~~v~~y~t~vPsyg~~WgF~~as~~~~ 316 (374)
T PRK01581 290 LTVKSYHTIVPSFGTDWGFHIAANSAY 316 (374)
T ss_pred CceEEEEEecCCCCCceEEEEEeCCcc
Confidence 33332221111122 256777776544
No 230
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.57 E-value=0.013 Score=56.51 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=50.5
Q ss_pred CCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEe----cCc--cc-------cccC--------ChHHH
Q 017068 14 RDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHC----SRC--LI-------PFTA--------YNATY 67 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~c----s~~--l~-------hw~~--------~~~~~ 67 (378)
.|.++.+++.++++ |+. +.+...|+..++...++||.|++ +.. +. .|.. ....+
T Consensus 102 ~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~i 181 (264)
T TIGR00446 102 NEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKEL 181 (264)
T ss_pred EcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHH
Confidence 34556777766654 543 56677788777776778999985 211 10 1111 12358
Q ss_pred HHHHhhcccCCcEEEEEcCCCCC
Q 017068 68 LIEVDRLLRPGGYLVISGPPVQW 90 (378)
Q Consensus 68 L~Ev~RVLkPGG~lvis~pp~~~ 90 (378)
|.++.+.|||||++++++-..+.
T Consensus 182 L~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 182 IDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred HHHHHHhcCCCCEEEEEeCCCCh
Confidence 99999999999999998764443
No 231
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=95.54 E-value=0.035 Score=51.29 Aligned_cols=69 Identities=17% Similarity=0.047 Sum_probs=46.9
Q ss_pred eEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068 6 ILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY 80 (378)
Q Consensus 6 v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~ 80 (378)
|+++++. +.+++.|+++ ++ .+.+..+|......+.+.||+|++..+..+ ...++.+.|+|||.
T Consensus 103 v~~vd~~-----~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~ 170 (212)
T PRK00312 103 VFSVERI-----KTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE-------IPRALLEQLKEGGI 170 (212)
T ss_pred EEEEeCC-----HHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-------hhHHHHHhcCCCcE
Confidence 5555444 6777777764 34 356677776443224588999998765533 34678899999999
Q ss_pred EEEEcC
Q 017068 81 LVISGP 86 (378)
Q Consensus 81 lvis~p 86 (378)
+++...
T Consensus 171 lv~~~~ 176 (212)
T PRK00312 171 LVAPVG 176 (212)
T ss_pred EEEEEc
Confidence 998653
No 232
>PRK00811 spermidine synthase; Provisional
Probab=95.51 E-value=0.017 Score=56.55 Aligned_cols=113 Identities=14% Similarity=0.212 Sum_probs=63.3
Q ss_pred HHHHhh--hhcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhh------cc-----cc-cccc
Q 017068 212 YKNTLN--VKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR------GL-----IG-VYHD 275 (378)
Q Consensus 212 Y~~~~~--~~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl-----ig-~~~~ 275 (378)
|-+.|. +++....-++|||+|||.|+++..++++ ++ -+|+-++-. ..+.++-+. |+ +- +..|
T Consensus 62 Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D 139 (283)
T PRK00811 62 YHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD 139 (283)
T ss_pred HHHHhhhHHHhhCCCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc
Confidence 444432 3444456789999999999999988876 33 244555544 444444332 11 00 1112
Q ss_pred ccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 276 WCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 276 w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
-.+-+..-+.+||+|-++. +..+. +...---..++-++-|+|+|||.+++.
T Consensus 140 a~~~l~~~~~~yDvIi~D~-~dp~~----~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 140 GIKFVAETENSFDVIIVDS-TDPVG----PAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred hHHHHhhCCCcccEEEECC-CCCCC----chhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 1111223347899998752 11110 111000134566889999999999986
No 233
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.49 E-value=0.0044 Score=57.52 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=70.2
Q ss_pred eeEEEecCCcceeeeeecc--CCCeeEEEeccCCCC-----cchHHHHhhcc--ccccc-cccccCC--CCCCccccccc
Q 017068 225 IRNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKS-----STLSVIYDRGL--IGVYH-DWCEPFS--TYPRTYDLIHV 292 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~--~~~vwvmnv~p~~~~-----~~l~~i~eRGl--ig~~~-~w~~~f~--typrtyDliH~ 292 (378)
-..+||+|||.|.|..+++ ..+. |++-.+.. ..+.-+..+|+ +.+++ |-...+. .-|.+.|.||.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~---n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDI---NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTS---EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCC---CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE
Confidence 3489999999999999885 3445 44444433 34566777787 33332 1111111 11478888776
Q ss_pred cCcc-ccccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHHHHHHHhc--CCceEE
Q 017068 293 SGIE-SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANT--VRWTAA 352 (378)
Q Consensus 293 ~~~~-~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~~~~~~~~--l~W~~~ 352 (378)
. | ..|-.....+.|=--...|-++-|+|+|||.+.+. |..++.+.+.+.++. -.++..
T Consensus 95 ~--FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 95 N--FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp E--S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred e--CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 3 3 22321111112222247888999999999999776 666777777766555 355554
No 234
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.35 E-value=0.0098 Score=61.38 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=58.0
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHH---hh-cc-cc-ccccccccCCCC-CCccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---DR-GL-IG-VYHDWCEPFSTY-PRTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~---eR-Gl-ig-~~~~w~~~f~ty-prtyDliH~~~~~~ 297 (378)
..|||+|||.|+++..+...-- --.|+..|.+ ..+..+- +| |+ +- +.+|-.+....+ +.+||.|-++--.+
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 4699999999999988765310 0135566654 5554443 22 32 11 122333221122 36899998544222
Q ss_pred c----ccCCCCCCCCC---------CccceeeeecccccCCCeEEEeC
Q 017068 298 L----IKNPGSNKNSC---------SLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 298 ~----~~~~~~~~~~c---------~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
. ...|+..-.+- ....+|-+.=|+|+|||.++++.
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 11111100000 01257888999999999999874
No 235
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.28 E-value=0.0073 Score=58.34 Aligned_cols=102 Identities=25% Similarity=0.302 Sum_probs=55.1
Q ss_pred eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHh---h-cc--cccc-ccccccCCCCCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD---R-GL--IGVY-HDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~e---R-Gl--ig~~-~~w~~~f~typrtyDliH~~~ 294 (378)
..|||++||.|+++.+|... .- .|+..|.+ ..++.+-+ | |+ +-++ +|-. .++.....||.|-++-
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~-~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGR-VFGAAVPKFDAILLDA 148 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHH-HhhhhccCCCEEEEcC
Confidence 36999999999999766432 22 24566655 55543332 2 33 1122 2221 2333335699987643
Q ss_pred ccccc----cCCCCCCCCC--C-------ccceeeeecccccCCCeEEEe
Q 017068 295 IESLI----KNPGSNKNSC--S-------LVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 295 ~~~~~----~~~~~~~~~c--~-------~~~~l~EmDRiLRPgG~~ii~ 331 (378)
-.|.. .+|+..-.+. . -..+|-++=|+|||||++|.+
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22210 1111000000 0 125888889999999999998
No 236
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.25 E-value=0.024 Score=55.47 Aligned_cols=43 Identities=28% Similarity=0.474 Sum_probs=37.6
Q ss_pred CCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068 44 PAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 44 pd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p 86 (378)
..+-||+|+|..+++++..+. .+++..++..|+|||+|++...
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 456799999999999997754 5899999999999999999654
No 237
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.25 E-value=0.041 Score=51.90 Aligned_cols=42 Identities=33% Similarity=0.692 Sum_probs=35.2
Q ss_pred CCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcEEEEEcC
Q 017068 44 PAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 44 pd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~lvis~p 86 (378)
..++||+|+|..++ |+.... ..+++++.++|+|||.|++-+|
T Consensus 99 ~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 99 SPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred CCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 35699999999965 665533 4889999999999999999888
No 238
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=95.24 E-value=0.011 Score=56.38 Aligned_cols=128 Identities=14% Similarity=0.221 Sum_probs=68.4
Q ss_pred CCeeEEEecCCccee----eeeeccCCCeeEEEeccCCCC-cchH----HHHhhcc---ccc-cccccccCCC----C-C
Q 017068 223 PAIRNIMDMNAFFGG----FAAALTSDPVWVMNVVPARKS-STLS----VIYDRGL---IGV-YHDWCEPFST----Y-P 284 (378)
Q Consensus 223 ~~iR~vlDm~ag~g~----faa~L~~~~vwvmnv~p~~~~-~~l~----~i~eRGl---ig~-~~~w~~~f~t----y-p 284 (378)
.+-++|||+|||+|. +|+++.... .|+-.|.. ..+. .+-+-|+ |-+ ..|..+.++. . .
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g----~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDG----RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCC----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 346799999999886 333443222 12333322 2222 2233344 111 2233332221 1 3
Q ss_pred CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-------------H----HHHHHHHH----H
Q 017068 285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------------P----EVIDKVSR----I 343 (378)
Q Consensus 285 rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-------------~----~~~~~~~~----~ 343 (378)
.+||+|.++.-=.. ...++-++-|.|||||.+|+.+. . .....+++ +
T Consensus 143 ~~fD~VfiDa~k~~------------y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i 210 (234)
T PLN02781 143 PEFDFAFVDADKPN------------YVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLL 210 (234)
T ss_pred CCCCEEEECCCHHH------------HHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHH
Confidence 58999987533222 23566677899999999997531 0 12233433 3
Q ss_pred HhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068 344 ANTVRWTAAVHDKEPGSNGREKILVATKS 372 (378)
Q Consensus 344 ~~~l~W~~~~~~~~~~~~~~e~~l~~~K~ 372 (378)
...=+++...... .+++++++|.
T Consensus 211 ~~~~~~~~~~lp~------gdG~~i~~k~ 233 (234)
T PLN02781 211 ASDPRVEISQISI------GDGVTLCRRL 233 (234)
T ss_pred hhCCCeEEEEEEe------CCccEEEEEe
Confidence 4445677666543 3568888875
No 239
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.22 E-value=0.05 Score=51.82 Aligned_cols=70 Identities=20% Similarity=0.337 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHcC-----CCeEEEEcccCCCCCCCCceeEEEecCcccc------ccC-------------------Ch
Q 017068 15 DSHKAQIQFALERG-----IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP------FTA-------------------YN 64 (378)
Q Consensus 15 D~se~~vq~A~erg-----~~~~~~v~dae~LPfpd~SFD~V~cs~~l~h------w~~-------------------~~ 64 (378)
|+|+.+++.|+++. ..+.+..+|... ++++++||+|+|+--... ... .-
T Consensus 139 Dis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~ 217 (275)
T PRK09328 139 DISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFY 217 (275)
T ss_pred ECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHH
Confidence 45567888887751 235666667533 455789999998521110 000 00
Q ss_pred HHHHHHHhhcccCCcEEEEEc
Q 017068 65 ATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 65 ~~~L~Ev~RVLkPGG~lvis~ 85 (378)
..+++++.++|||||++++..
T Consensus 218 ~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 218 RRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHhcccCCEEEEEE
Confidence 257788889999999999854
No 240
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.21 E-value=0.028 Score=58.20 Aligned_cols=140 Identities=19% Similarity=0.300 Sum_probs=73.3
Q ss_pred eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc--cc-ccccccccCC----CCCCccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL--IG-VYHDWCEPFS----TYPRTYDLI 290 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig-~~~~w~~~f~----typrtyDli 290 (378)
-.|||+|||.|+++.+|... .- .|+..|.. ..+..+-++ |+ +- +-.|-.. ++ ..+.+||.|
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~-~~~~~~~~~~~fD~V 329 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQG---EIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRN-LLELKPQWRGYFDRI 329 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCc---eEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhh-cccccccccccCCEE
Confidence 46999999999999877643 22 34555654 555444332 33 11 1122221 12 223689998
Q ss_pred ccc----CccccccCCCCCCCC---CC-------ccceeeeecccccCCCeEEEeC----CHHHHHHHHHHHhcC-CceE
Q 017068 291 HVS----GIESLIKNPGSNKNS---CS-------LVDLMVEMDRMLRPEGTVVVRD----SPEVIDKVSRIANTV-RWTA 351 (378)
Q Consensus 291 H~~----~~~~~~~~~~~~~~~---c~-------~~~~l~EmDRiLRPgG~~ii~d----~~~~~~~~~~~~~~l-~W~~ 351 (378)
-++ +.-..-+.|+.. ++ .. ...+|-++=|+|||||.+|.+. ..+....|+.++++- .|+.
T Consensus 330 l~DaPCSg~G~~~r~p~~~-~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~ 408 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDAR-WRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL 408 (434)
T ss_pred EEeCCCCcccccccCcchh-hhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence 754 211111111100 00 01 1467889999999999999874 234445555555443 3543
Q ss_pred EEec--CCCCCCCCeEEEEEE
Q 017068 352 AVHD--KEPGSNGREKILVAT 370 (378)
Q Consensus 352 ~~~~--~~~~~~~~e~~l~~~ 370 (378)
.... .-+..++.+++++|.
T Consensus 409 ~~~~~~~~P~~~~~dGfF~a~ 429 (434)
T PRK14901 409 EPPKQKIWPHRQDGDGFFMAV 429 (434)
T ss_pred cCCCCccCCCCCCCCcEEEEE
Confidence 3110 001122467888874
No 241
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=95.21 E-value=0.0073 Score=60.29 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=49.7
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhccc-------ccccccc-ccCCCCCCccccccccCcc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-------GVYHDWC-EPFSTYPRTYDLIHVSGIE 296 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGli-------g~~~~w~-~~f~typrtyDliH~~~~~ 296 (378)
.+|||+|||+|.++..|..+.. +|+-.|.+ .+|.++-+|.-- +.-.++. ..+...+.+||+|-|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 4799999999999999988764 67888877 888877776321 0111111 1122336899999998887
Q ss_pred cccc
Q 017068 297 SLIK 300 (378)
Q Consensus 297 ~~~~ 300 (378)
.++.
T Consensus 223 ~H~p 226 (315)
T PLN02585 223 IHYP 226 (315)
T ss_pred EecC
Confidence 6653
No 242
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.16 E-value=0.0086 Score=53.45 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=36.0
Q ss_pred cccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 277 CEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 277 ~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
.+.+|.-+.+||+|-+..++..+. +....|-|+-|+|+|||.+++.|
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~~---------d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNVV---------DRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcCC---------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 344654447999999887666543 23578999999999999998875
No 243
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.07 E-value=0.013 Score=61.25 Aligned_cols=128 Identities=22% Similarity=0.311 Sum_probs=65.8
Q ss_pred cCccccccchHHHHHHHHHHHHHhhhhcCCCC----eeEEEecCCcceeeee------eccCCCeeEEEeccCCCC----
Q 017068 193 NGYDVFEADSRRWRRRVAYYKNTLNVKLGTPA----IRNIMDMNAFFGGFAA------ALTSDPVWVMNVVPARKS---- 258 (378)
Q Consensus 193 ~~~~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~----iR~vlDm~ag~g~faa------~L~~~~vwvmnv~p~~~~---- 258 (378)
.+.+.|+.|...+..-=+.-.+-|.......+ --+|||+|||.|-+.. +-...++= |.+++..
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~---VyAVEkn~~A~ 227 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK---VYAVEKNPNAV 227 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE---EEEEESSTHHH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE---EEEEcCCHhHH
Confidence 36789999987665432221111222234443 3569999999998852 12233442 2333332
Q ss_pred cchH-HHHhhcc---ccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 259 STLS-VIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 259 ~~l~-~i~eRGl---ig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
.+|+ .+-+.|+ |-+++.=-+.+.. |--.|+|.+-.+-|... +. .+..+|.-.||.|+|||.+|=+
T Consensus 228 ~~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIVSElLGsfg~------nE-l~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 228 VTLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDIIVSELLGSFGD------NE-LSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp HHHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEEE---BTTBT------TT-SHHHHHHHGGGGEEEEEEEESS
T ss_pred HHHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEEEEeccCCccc------cc-cCHHHHHHHHhhcCCCCEEeCc
Confidence 2343 2345555 5555544333322 45678888765544322 11 3345678889999999877643
No 244
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.04 E-value=0.039 Score=52.73 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=57.1
Q ss_pred CCeEEEecCCCCChHHHHHHHHHcCC-CeEEEEcccCCC-C--CCCCceeEEEecCccccccCCh--------HHHHHHH
Q 017068 4 ENILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRL-P--FPAFSFDIVHCSRCLIPFTAYN--------ATYLIEV 71 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~erg~-~~~~~v~dae~L-P--fpd~SFD~V~cs~~l~hw~~~~--------~~~L~Ev 71 (378)
.+.++|.+...= -...++.+.+.++ ++.+...|+..+ + ++++|.|-|+..+- -+|+-.. ...++++
T Consensus 73 ~nfiGiEi~~~~-v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-DPWpKkRH~KRRl~~~~fl~~~ 150 (227)
T COG0220 73 KNFLGIEIRVPG-VAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-DPWPKKRHHKRRLTQPEFLKLY 150 (227)
T ss_pred CCEEEEEEehHH-HHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-CCCCCccccccccCCHHHHHHH
Confidence 466777776532 2344677778899 788887887544 2 46669999986553 3454322 2789999
Q ss_pred hhcccCCcEEEEEcC
Q 017068 72 DRLLRPGGYLVISGP 86 (378)
Q Consensus 72 ~RVLkPGG~lvis~p 86 (378)
.|+|||||.|.+.+-
T Consensus 151 a~~Lk~gG~l~~aTD 165 (227)
T COG0220 151 ARKLKPGGVLHFATD 165 (227)
T ss_pred HHHccCCCEEEEEec
Confidence 999999999999763
No 245
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=94.99 E-value=0.056 Score=52.66 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=49.6
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecC-------------ccccccC---
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSR-------------CLIPFTA--- 62 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~-------------~l~hw~~--- 62 (378)
.|++++ +|+.+++.|+++ +.. +.+..+|... +++++.||+|+|+- .+.|-+.
T Consensus 140 ~v~avD-----is~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL 213 (284)
T TIGR00536 140 EVIAVD-----ISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLAL 213 (284)
T ss_pred EEEEEE-----CCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHh
Confidence 455555 456788887774 443 6677777644 56666899999851 1112110
Q ss_pred --------ChHHHHHHHhhcccCCcEEEEEcC
Q 017068 63 --------YNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 63 --------~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.-...+.++.+.|+|||++++...
T Consensus 214 ~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 214 VGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 112678899999999999998654
No 246
>PRK01581 speE spermidine synthase; Validated
Probab=94.95 E-value=0.057 Score=55.24 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=50.2
Q ss_pred CeEEEecCCCCChHHHHHHHHHc------------CCCeEEEEcccCC-CCCCCCceeEEEecCccccccC-----ChHH
Q 017068 5 NILTLSFAPRDSHKAQIQFALER------------GIPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTA-----YNAT 66 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er------------g~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~-----~~~~ 66 (378)
.|+++++. +++++.|++. ...+.+.++|+.+ ++-.++.||+|++... -+... ....
T Consensus 176 ~It~VEID-----peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~E 249 (374)
T PRK01581 176 HVDLVDLD-----GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSE 249 (374)
T ss_pred eEEEEeCC-----HHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHH
Confidence 35555555 6999999961 2245667777654 4555778999998631 11111 1136
Q ss_pred HHHHHhhcccCCcEEEEEcC
Q 017068 67 YLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 67 ~L~Ev~RVLkPGG~lvis~p 86 (378)
+++.+.+.|+|||.|++...
T Consensus 250 Fy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 250 LFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HHHHHHHhcCCCcEEEEecC
Confidence 88999999999999988643
No 247
>PRK00811 spermidine synthase; Provisional
Probab=94.90 E-value=0.069 Score=52.26 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=50.0
Q ss_pred eEEEecCCCCChHHHHHHHHHcC----------CCeEEEEcccCC-CCCCCCceeEEEecCccccccCC----hHHHHHH
Q 017068 6 ILTLSFAPRDSHKAQIQFALERG----------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY----NATYLIE 70 (378)
Q Consensus 6 v~~ms~ap~D~se~~vq~A~erg----------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~----~~~~L~E 70 (378)
|+++++. +.+++.|++.- ..+.+..+|+.+ +...+++||+|++... -++... ...++++
T Consensus 103 V~~VEid-----~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~-dp~~~~~~l~t~ef~~~ 176 (283)
T PRK00811 103 ITLVEID-----ERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDST-DPVGPAEGLFTKEFYEN 176 (283)
T ss_pred EEEEeCC-----HHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCC-CCCCchhhhhHHHHHHH
Confidence 4555555 58888888741 235567777643 3446789999998543 233221 1367889
Q ss_pred HhhcccCCcEEEEEcC
Q 017068 71 VDRLLRPGGYLVISGP 86 (378)
Q Consensus 71 v~RVLkPGG~lvis~p 86 (378)
+.|.|+|||.+++...
T Consensus 177 ~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 177 CKRALKEDGIFVAQSG 192 (283)
T ss_pred HHHhcCCCcEEEEeCC
Confidence 9999999999998643
No 248
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.87 E-value=0.008 Score=65.98 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=72.2
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hccc-c----ccccccccCCCCCCccccccccCc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI-G----VYHDWCEPFSTYPRTYDLIHVSGI 295 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGli-g----~~~~w~~~f~typrtyDliH~~~~ 295 (378)
+.|||++||+|+|+.++...+.- .|+-+|.+ ..+..+-+ .|+- . +..|..+.+....++||+|-++--
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 68999999999999998876431 35666655 45543332 2331 0 122322212123578999998632
Q ss_pred -cccccCC-CCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEe
Q 017068 296 -ESLIKNP-GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVH 354 (378)
Q Consensus 296 -~~~~~~~-~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~ 354 (378)
|..-... ......-....++-..=|+|+|||.+++......+....+.+..-.+++...
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 2210000 0000000123566667889999999999765544444466666667777764
No 249
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.76 E-value=0.0061 Score=57.92 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=65.7
Q ss_pred CeeEEEecCCcceeeeeeccCCCe-eEEEeccCCCCcchHHHH-----hhcccccccc-ccccCCCCCCccccccccCcc
Q 017068 224 AIRNIMDMNAFFGGFAAALTSDPV-WVMNVVPARKSSTLSVIY-----DRGLIGVYHD-WCEPFSTYPRTYDLIHVSGIE 296 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~~~v-wvmnv~p~~~~~~l~~i~-----eRGlig~~~~-w~~~f~typrtyDliH~~~~~ 296 (378)
+...+||.|||.|..+-.|+-+-. .|==|-|.. .-++.+. +.+-+|-+.. ==+.|-+-+..||+|=+-||.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~--~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVE--KFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-H--HHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCH--HHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 588899999999999976654332 222222322 2222233 2223332221 111232335799999999999
Q ss_pred ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----------------HHHHHHHHHHhcCCceEEEec
Q 017068 297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAAVHD 355 (378)
Q Consensus 297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----------------~~~~~~~~~~~~l~W~~~~~~ 355 (378)
.+++ + ..+..+|----.-|||+|.+|+-|+. -.-+.+.+|.+.=-.++...+
T Consensus 133 ghLT------D-~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLT------D-EDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-------H-HHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccCC------H-HHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 9987 2 23345566666789999999998531 134556666666666665543
No 250
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=94.72 E-value=0.016 Score=60.22 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=56.4
Q ss_pred eEEEecCCcceeeeeeccC---CCeeEEEeccCCCC-cchHHHHh----hcc--c-cccccccccCCCCCCcccccccc-
Q 017068 226 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYD----RGL--I-GVYHDWCEPFSTYPRTYDLIHVS- 293 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~---~~vwvmnv~p~~~~-~~l~~i~e----RGl--i-g~~~~w~~~f~typrtyDliH~~- 293 (378)
..|||+|||.|+++.+|.. ..- .|+..|.+ ..++.+-+ .|+ + -+.+|... ++ .+.+||.|-++
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~-~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGITIIETIEGDARS-FS-PEEQPDAILLDA 326 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccc-cc-cCCCCCEEEEcC
Confidence 5799999999998866653 222 34555655 55543332 243 1 12233332 22 23679998753
Q ss_pred ---CccccccCCCCCCCCC--Cc-------cceeeeecccccCCCeEEEeC
Q 017068 294 ---GIESLIKNPGSNKNSC--SL-------VDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 294 ---~~~~~~~~~~~~~~~c--~~-------~~~l~EmDRiLRPgG~~ii~d 332 (378)
+.-.....|+..-... .+ ..+|-++=|+|||||.++++.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2211111111100000 11 257889999999999999984
No 251
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.71 E-value=0.047 Score=50.68 Aligned_cols=81 Identities=25% Similarity=0.338 Sum_probs=51.6
Q ss_pred CCCeEEEecCCCCChHHHHHHHHHcCCC-eEEEEcccCC-CC--CCCCceeEEEecCccccccCCh--------HHHHHH
Q 017068 3 SENILTLSFAPRDSHKAQIQFALERGIP-AFVAMLGTRR-LP--FPAFSFDIVHCSRCLIPFTAYN--------ATYLIE 70 (378)
Q Consensus 3 ~~~v~~ms~ap~D~se~~vq~A~erg~~-~~~~v~dae~-LP--fpd~SFD~V~cs~~l~hw~~~~--------~~~L~E 70 (378)
+.+++++.+...-+..+ .+.+.+++++ +.+..+|+.. |+ ++++++|.|+..+- -+|+... ...+.+
T Consensus 41 d~n~iGiE~~~~~v~~a-~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-DPWpK~rH~krRl~~~~fl~~ 118 (195)
T PF02390_consen 41 DINFIGIEIRKKRVAKA-LRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-DPWPKKRHHKRRLVNPEFLEL 118 (195)
T ss_dssp TSEEEEEES-HHHHHHH-HHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES------SGGGGGGSTTSHHHHHH
T ss_pred CCCEEEEecchHHHHHH-HHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-CCCcccchhhhhcCCchHHHH
Confidence 46778888776433333 3444455664 5667778766 33 67899999986542 3444311 279999
Q ss_pred HhhcccCCcEEEEEc
Q 017068 71 VDRLLRPGGYLVISG 85 (378)
Q Consensus 71 v~RVLkPGG~lvis~ 85 (378)
+.|+|+|||.+.+.+
T Consensus 119 ~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 119 LARVLKPGGELYFAT 133 (195)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHHcCCCCEEEEEe
Confidence 999999999999876
No 252
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.69 E-value=0.11 Score=49.49 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=53.1
Q ss_pred ccCCCCC---CCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcE-----EEEEcCCCCCCcc-chHHHHHHHHHH
Q 017068 37 GTRRLPF---PAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGY-----LVISGPPVQWPKQ-DKEWADLQAVAR 105 (378)
Q Consensus 37 dae~LPf---pd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~-----lvis~pp~~~~~~-~~~w~~l~~l~~ 105 (378)
|-...|. +++.||+|.|+.++-..+++. +..++-+.+.|||+|. |++..|....... +-.-+.+..+..
T Consensus 91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~ 170 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIME 170 (219)
T ss_pred ccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHH
Confidence 4444454 488999999999998888765 6899999999999999 8877662111111 111234556667
Q ss_pred Hhceeeecc
Q 017068 106 ALCYELIAV 114 (378)
Q Consensus 106 ~lcw~~~~~ 114 (378)
.+.+..+..
T Consensus 171 ~LGf~~~~~ 179 (219)
T PF11968_consen 171 SLGFTRVKY 179 (219)
T ss_pred hCCcEEEEE
Confidence 777766554
No 253
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=94.61 E-value=0.016 Score=55.34 Aligned_cols=107 Identities=15% Similarity=0.212 Sum_probs=64.8
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-------ccccc-cccccccCCCCCCccccccccCcc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-------GLIGV-YHDWCEPFSTYPRTYDLIHVSGIE 296 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-------Glig~-~~~w~~~f~typrtyDliH~~~~~ 296 (378)
++|||+|||+|+|+-.|+.++. =.|...|.. ++|.--+.. +..-+ +-+|.+-. .|++.|+-+|
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~------~d~~~~Dvsf 148 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIF------PDFATFDVSF 148 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcC------CCceeeeEEE
Confidence 5899999999999999988753 235666655 566542222 11111 22444422 2555555555
Q ss_pred ccccCCCCCCCCCCccceeeeecccccCCCeEEEe-------------------CC---HHHHHHHHHHHhcCCceEEE
Q 017068 297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-------------------DS---PEVIDKVSRIANTVRWTAAV 353 (378)
Q Consensus 297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-------------------d~---~~~~~~~~~~~~~l~W~~~~ 353 (378)
.... .+|-.|.+.|+| |.+|+- |+ ...++++...+.++-|++.-
T Consensus 149 iS~~------------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 149 ISLI------------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred eehH------------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 4332 356666777777 665542 32 24677777778888898764
No 254
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=94.59 E-value=0.11 Score=50.83 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=46.4
Q ss_pred CCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecC------c-------cccccC-------C----
Q 017068 14 RDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSR------C-------LIPFTA-------Y---- 63 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~------~-------l~hw~~-------~---- 63 (378)
.|+|+.+++.|+++ ++. +.+..+|... ++++++||+|+|+- . +.|-+. +
T Consensus 151 vDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~ 229 (284)
T TIGR03533 151 VDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDL 229 (284)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHH
Confidence 34556788877765 543 5677777532 45677899999851 0 111110 0
Q ss_pred hHHHHHHHhhcccCCcEEEEEcC
Q 017068 64 NATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 64 ~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
-...++++.++|+|||++++-..
T Consensus 230 ~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 230 VRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 02668899999999999998654
No 255
>PRK07402 precorrin-6B methylase; Provisional
Probab=94.58 E-value=0.094 Score=47.93 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=45.5
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCC-CCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 78 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG 78 (378)
.|+++++. +.+++.|+++ ++ .+.+..+|+.. ++.-...+|.++... ......+++++.|+|+||
T Consensus 66 ~V~~vD~s-----~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~Lkpg 135 (196)
T PRK07402 66 RVIAIERD-----EEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPG 135 (196)
T ss_pred EEEEEeCC-----HHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCC
Confidence 46666665 4677776653 43 35566666643 333233467665421 223248999999999999
Q ss_pred cEEEEEcC
Q 017068 79 GYLVISGP 86 (378)
Q Consensus 79 G~lvis~p 86 (378)
|+|++..+
T Consensus 136 G~li~~~~ 143 (196)
T PRK07402 136 GRLVATAS 143 (196)
T ss_pred eEEEEEee
Confidence 99999865
No 256
>PHA03411 putative methyltransferase; Provisional
Probab=94.55 E-value=0.018 Score=56.65 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=61.4
Q ss_pred eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHhhcc-cc-ccccccccCCCCCCccccccccCcccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IG-VYHDWCEPFSTYPRTYDLIHVSGIESLIK 300 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~w~~~f~typrtyDliH~~~~~~~~~ 300 (378)
..|||+|||+|.|+..+..+ .. +|+-.|.. ..++.+-++-- +- +..|-.+.. -+++||+|-++-.|....
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~---~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPE---KIVCVELNPEFARIGKRLLPEAEWITSDVFEFE--SNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--ccCCCcEEEEcCCccccC
Confidence 47999999999998877653 22 56666765 77776655410 11 122222211 136899999988876542
Q ss_pred CCCCCC----------CCC-CccceeeeecccccCCCeEEEe
Q 017068 301 NPGSNK----------NSC-SLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 301 ~~~~~~----------~~c-~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
..+... ..| .+...+-..-++|.|+|.+++-
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 111111 011 1456778889999999977654
No 257
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=94.49 E-value=0.04 Score=57.11 Aligned_cols=78 Identities=22% Similarity=0.410 Sum_probs=49.6
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCC--CCCCceeEEEecC-c-----ccc-----ccCC---
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP--FPAFSFDIVHCSR-C-----LIP-----FTAY--- 63 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LP--fpd~SFD~V~cs~-~-----l~h-----w~~~--- 63 (378)
.|+++++. +.+++.++++ |+. +.+..+|+..++ ++ ++||+|++.- | +.+ |...
T Consensus 277 ~v~avDi~-----~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~ 350 (444)
T PRK14902 277 KVVALDIH-----EHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKED 350 (444)
T ss_pred EEEEEeCC-----HHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHH
Confidence 35555554 5777766653 543 567778877653 44 7899998631 0 111 1110
Q ss_pred -------hHHHHHHHhhcccCCcEEEEEcCCC
Q 017068 64 -------NATYLIEVDRLLRPGGYLVISGPPV 88 (378)
Q Consensus 64 -------~~~~L~Ev~RVLkPGG~lvis~pp~ 88 (378)
...+|.++.|+|||||.+++++-..
T Consensus 351 ~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 351 IESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1257999999999999999886533
No 258
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.46 E-value=0.096 Score=51.97 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=46.5
Q ss_pred CCChHHHHHHHHHc----CC--CeEEEEcccCCCCCCCCceeEEEecCc-------------cccccC-------C----
Q 017068 14 RDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRC-------------LIPFTA-------Y---- 63 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~--~~~~~v~dae~LPfpd~SFD~V~cs~~-------------l~hw~~-------~---- 63 (378)
.|+|+.+++.|+++ ++ .+.+..+|... ++++++||+|+|+-= +.|.+. +
T Consensus 163 vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~ 241 (307)
T PRK11805 163 VDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDL 241 (307)
T ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHH
Confidence 35556888887775 44 26677777533 345678999998610 111111 0
Q ss_pred hHHHHHHHhhcccCCcEEEEEc
Q 017068 64 NATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 64 ~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
-...++++.++|+|||++++-.
T Consensus 242 ~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 242 VRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 0267899999999999999854
No 259
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.44 E-value=0.089 Score=51.63 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=56.7
Q ss_pred EEEEcccCCCCCCC---CceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCCCCCCcc---------chHHHH
Q 017068 32 FVAMLGTRRLPFPA---FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ---------DKEWAD 99 (378)
Q Consensus 32 ~~~v~dae~LPfpd---~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp~~~~~~---------~~~w~~ 99 (378)
....+|-..+.-++ ++||+|+..+ ++.-...--..+..|.++|||||+++=.+|-.+.... +-.|++
T Consensus 147 sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eE 225 (270)
T PF07942_consen 147 SMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEE 225 (270)
T ss_pred eEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHH
Confidence 34556655554444 7999998754 3333332347899999999999988766663322211 122889
Q ss_pred HHHHHHHhceeeecccc
Q 017068 100 LQAVARALCYELIAVDG 116 (378)
Q Consensus 100 l~~l~~~lcw~~~~~~~ 116 (378)
+..+++.+.|+.+.+..
T Consensus 226 i~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 226 IKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHHHHCCCEEEEEEE
Confidence 99999999999886643
No 260
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.40 E-value=0.11 Score=50.44 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=33.4
Q ss_pred EEEEcccCCC--CCCCCceeEEEecCcccccc-C-ChHHHHHHHhhcccCCcEEEE
Q 017068 32 FVAMLGTRRL--PFPAFSFDIVHCSRCLIPFT-A-YNATYLIEVDRLLRPGGYLVI 83 (378)
Q Consensus 32 ~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~-~-~~~~~L~Ev~RVLkPGG~lvi 83 (378)
.+..+|+.++ .|+|+|||+|+---=..-.. + ....+.+|++|||||||.++-
T Consensus 188 ~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 188 KIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred EEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 4555666444 49999999996311000000 0 113788999999999999985
No 261
>PLN03075 nicotianamine synthase; Provisional
Probab=94.37 E-value=0.017 Score=57.39 Aligned_cols=135 Identities=10% Similarity=0.056 Sum_probs=75.3
Q ss_pred CeeEEEecCCcceeeeeeccC----CCeeEEEeccCCCC-cchHH---HH--hhcc---cc-ccccccccCCCCCCcccc
Q 017068 224 AIRNIMDMNAFFGGFAAALTS----DPVWVMNVVPARKS-STLSV---IY--DRGL---IG-VYHDWCEPFSTYPRTYDL 289 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~----~~vwvmnv~p~~~~-~~l~~---i~--eRGl---ig-~~~~w~~~f~typrtyDl 289 (378)
.-+.|+|+|||-|++.|.++. .+--+ .-.|.. ..++. .+ +.|+ +- ..+|-.+. ++....||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~---~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSF---HNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-TESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEE---EEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-ccccCCcCE
Confidence 568999999999988666442 22222 333333 22221 22 2444 11 12333332 111368999
Q ss_pred ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH---HHHHH-HH-HHHhcCCceEEEecCCCCCCCCe
Q 017068 290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---EVIDK-VS-RIANTVRWTAAVHDKEPGSNGRE 364 (378)
Q Consensus 290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~---~~~~~-~~-~~~~~l~W~~~~~~~~~~~~~~e 364 (378)
|-|. .+.++. +-.-..++-.+-|.|||||+++++.-. ..+.. +. +..+ .|++...-+-.+ ..-.
T Consensus 199 VF~~-ALi~~d-------k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~-~v~N 267 (296)
T PLN03075 199 VFLA-ALVGMD-------KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTD-EVIN 267 (296)
T ss_pred EEEe-cccccc-------cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCC-Ccee
Confidence 9998 666553 112267999999999999999999532 22221 11 1122 777765332211 1345
Q ss_pred EEEEEEecC
Q 017068 365 KILVATKSL 373 (378)
Q Consensus 365 ~~l~~~K~~ 373 (378)
-+++++|.-
T Consensus 268 svi~~r~~~ 276 (296)
T PLN03075 268 SVIIARKPG 276 (296)
T ss_pred eEEEEEeec
Confidence 788888864
No 262
>PRK03612 spermidine synthase; Provisional
Probab=94.37 E-value=0.022 Score=60.49 Aligned_cols=125 Identities=16% Similarity=0.168 Sum_probs=67.5
Q ss_pred CCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh-cc------------cc-ccccccccCCCCCCcc
Q 017068 223 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-GL------------IG-VYHDWCEPFSTYPRTY 287 (378)
Q Consensus 223 ~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR-Gl------------ig-~~~~w~~~f~typrty 287 (378)
.+-++|||+|||.|+.+..+++++- +-.|+-.|-. ..++.+-+. .+ +- +..|=.+-+...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4568899999999999887776541 1244445543 555544442 11 11 1112111122346799
Q ss_pred ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-----CHHHHHHHHHHHhcCCceEE
Q 017068 288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAA 352 (378)
Q Consensus 288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-----~~~~~~~~~~~~~~l~W~~~ 352 (378)
|+|-++.. .... +. ..... -...+-++-|.|+|||.+++.. ..+...++.+..++....+.
T Consensus 375 DvIi~D~~-~~~~-~~-~~~L~-t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 375 DVIIVDLP-DPSN-PA-LGKLY-SVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CEEEEeCC-CCCC-cc-hhccc-hHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 99988621 1110 00 00000 0235567789999999999963 23444555555555544443
No 263
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=94.27 E-value=0.013 Score=53.21 Aligned_cols=120 Identities=20% Similarity=0.257 Sum_probs=59.2
Q ss_pred chHHHHHHHH--HHHHHhhh---hcCCCCeeEEEecCCcce--eeeeeccCCCeeEEEeccCCCCcc---hHHHHhh---
Q 017068 201 DSRRWRRRVA--YYKNTLNV---KLGTPAIRNIMDMNAFFG--GFAAALTSDPVWVMNVVPARKSST---LSVIYDR--- 267 (378)
Q Consensus 201 d~~~w~~~v~--~Y~~~~~~---~~~~~~iR~vlDm~ag~g--~faa~L~~~~vwvmnv~p~~~~~~---l~~i~eR--- 267 (378)
+...|...+- .|+..... ......-++||++|||+| |++++.....- .|+-+|.+.. ++...++
T Consensus 17 G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~---~Vv~TD~~~~l~~l~~Ni~~N~~ 93 (173)
T PF10294_consen 17 GGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAA---RVVLTDYNEVLELLRRNIELNGS 93 (173)
T ss_dssp ------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-S---EEEEEE-S-HHHHHHHHHHTT--
T ss_pred cEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCc---eEEEeccchhhHHHHHHHHhccc
Confidence 4677876553 46654210 012234569999999988 66666662122 3455665433 2333333
Q ss_pred ---cc-ccccccccccC--CC-CCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 268 ---GL-IGVYHDWCEPF--ST-YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 268 ---Gl-ig~~~~w~~~f--~t-yprtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
+- --.-.+|.+.. .. -++.||+|-++-|+-.- -..+.++-=++++|.|+|-+++.-
T Consensus 94 ~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---------~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 94 LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---------ELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp ------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---------GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cccccccCcEEEecCcccccccccccCCEEEEecccchH---------HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 11 23456897743 11 24689999999887631 223566666899999999988863
No 264
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=94.26 E-value=0.073 Score=49.85 Aligned_cols=117 Identities=16% Similarity=0.227 Sum_probs=66.5
Q ss_pred EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cch---HHHHh-hcccc----ccccccccCCCCCCccccccccCccc
Q 017068 227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STL---SVIYD-RGLIG----VYHDWCEPFSTYPRTYDLIHVSGIES 297 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l---~~i~e-RGlig----~~~~w~~~f~typrtyDliH~~~~~~ 297 (378)
+|||+|||-|.+=-.|++...-- -++-+|=+ ..+ |-|.| +|+-- ...|.-.+ -..+.-||+||--+.+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 89999999998877776554310 02333322 222 33343 45421 01111111 11247899999888876
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhc
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANT 346 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~ 346 (378)
... .+..+..-.+..++==++++|+|||.|+|..=.-+.+++.+....
T Consensus 148 Ais-Ls~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~ 195 (227)
T KOG1271|consen 148 AIS-LSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN 195 (227)
T ss_pred eee-cCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc
Confidence 442 111112223356777789999999999999866666666554333
No 265
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=94.25 E-value=0.019 Score=59.51 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=57.2
Q ss_pred eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh----cc--c-cccccccccCCCC-CCcccccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GL--I-GVYHDWCEPFSTY-PRTYDLIHVS 293 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR----Gl--i-g~~~~w~~~f~ty-prtyDliH~~ 293 (378)
.+||||+||.||.+.++... .- .|+..|.+ ..|..+-++ |+ + -+.+|... ++.+ +.+||.|-++
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEEC
Confidence 36999999999988776532 33 45666765 666555433 43 1 12233332 2322 4689998764
Q ss_pred Ccccc---cc-CCCCCCCCC---C-------ccceeeeecccccCCCeEEEe
Q 017068 294 GIESL---IK-NPGSNKNSC---S-------LVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 294 ~~~~~---~~-~~~~~~~~c---~-------~~~~l~EmDRiLRPgG~~ii~ 331 (378)
---|. +. .|+.. ++- . -..+|-+.=+.|+|||.++.+
T Consensus 315 aPCsg~G~~~~~p~~~-~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 315 APCTSLGTARNHPEVL-RRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCCCccccCChHHH-HhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22111 10 00000 000 0 025677888999999999997
No 266
>PHA03411 putative methyltransferase; Provisional
Probab=94.17 E-value=0.16 Score=50.11 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=55.5
Q ss_pred CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCCh-------------------H
Q 017068 5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-------------------A 65 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-------------------~ 65 (378)
.|+++++. +.+++.|+++...+.+..+|+..++ .+++||+|+++-.+.|....+ .
T Consensus 90 ~V~gVDis-----p~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~ 163 (279)
T PHA03411 90 KIVCVELN-----PEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLG 163 (279)
T ss_pred EEEEEECC-----HHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHH
Confidence 45555555 5899999887545778888887665 357899999987776643221 2
Q ss_pred HHHHHHhhcccCCcEEEEE--cCCCC
Q 017068 66 TYLIEVDRLLRPGGYLVIS--GPPVQ 89 (378)
Q Consensus 66 ~~L~Ev~RVLkPGG~lvis--~pp~~ 89 (378)
..++.+.++|+|+|.+.+. +.|.+
T Consensus 164 ~~l~~v~~~L~p~G~~~~~yss~~~y 189 (279)
T PHA03411 164 QKFADVGYFIVPTGSAGFAYSGRPYY 189 (279)
T ss_pred HHHhhhHheecCCceEEEEEeccccc
Confidence 5667888999999977653 44554
No 267
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=94.12 E-value=0.082 Score=52.62 Aligned_cols=73 Identities=27% Similarity=0.488 Sum_probs=48.2
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCC-CceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 79 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd-~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG 79 (378)
.|+++|+.| ..|+.|+++ +++..........+..+. +.||+|+|+- + .+.-.....++.+.|||||
T Consensus 187 ~v~g~DiDp-----~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L---A~vl~~La~~~~~~lkpgg 257 (300)
T COG2264 187 KVVGVDIDP-----QAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L---AEVLVELAPDIKRLLKPGG 257 (300)
T ss_pred eEEEecCCH-----HHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h---HHHHHHHHHHHHHHcCCCc
Confidence 366777665 667777664 454211112223344555 5999999875 3 2333478889999999999
Q ss_pred EEEEEcC
Q 017068 80 YLVISGP 86 (378)
Q Consensus 80 ~lvis~p 86 (378)
++++|+-
T Consensus 258 ~lIlSGI 264 (300)
T COG2264 258 RLILSGI 264 (300)
T ss_pred eEEEEee
Confidence 9999985
No 268
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=94.03 E-value=0.055 Score=55.68 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=63.9
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc--c-cccccccccCCCC---CCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--I-GVYHDWCEPFSTY---PRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--i-g~~~~w~~~f~ty---prtyDliH~~~ 294 (378)
..|||++||+|.|+..|.+..- .|+..|.. ..++.+-+ .|+ + -+..|..+.++.+ ..+||+|-.+-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 4799999999999999987643 44555554 45543332 233 1 1223333323322 24688877532
Q ss_pred ccccccCCCCCCCCCC-ccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEE
Q 017068 295 IESLIKNPGSNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA 352 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~-~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~ 352 (378)
- |-. ...++-++.+ |+|+|.++++-+..++.+--+.+..-.|++.
T Consensus 371 P------------r~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 371 P------------RKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred C------------CCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 1 112 1334444444 7899999999777766554444444456654
No 269
>PRK04457 spermidine synthase; Provisional
Probab=93.97 E-value=0.15 Score=49.43 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=49.0
Q ss_pred CeEEEecCCCCChHHHHHHHHHc-C-----CCeEEEEcccCC-CCCCCCceeEEEecCccc--cccC--ChHHHHHHHhh
Q 017068 5 NILTLSFAPRDSHKAQIQFALER-G-----IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLI--PFTA--YNATYLIEVDR 73 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er-g-----~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~--hw~~--~~~~~L~Ev~R 73 (378)
.|+++++. +++++.|++. + ..+.+.++|+.. ++-..++||+|++.. +. ..+. ....+++++.+
T Consensus 92 ~v~~VEid-----p~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~ 165 (262)
T PRK04457 92 RQTAVEIN-----PQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRN 165 (262)
T ss_pred eEEEEECC-----HHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHH
Confidence 45666665 5889998885 2 224567777532 232246899999742 21 1111 11389999999
Q ss_pred cccCCcEEEEEc
Q 017068 74 LLRPGGYLVISG 85 (378)
Q Consensus 74 VLkPGG~lvis~ 85 (378)
+|+|||.+++..
T Consensus 166 ~L~pgGvlvin~ 177 (262)
T PRK04457 166 ALSSDGIFVVNL 177 (262)
T ss_pred hcCCCcEEEEEc
Confidence 999999999853
No 270
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=93.91 E-value=0.18 Score=49.95 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=87.7
Q ss_pred cchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCC--CeeEEEeccCCCC-cchHHHHh-------hcc
Q 017068 200 ADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYD-------RGL 269 (378)
Q Consensus 200 ~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~-~~l~~i~e-------RGl 269 (378)
-.|+.|-..|-.=.+... ...+. -++|+|||+|.-+-+|+.. +. -|.++|-+ ..+.++-| .|-
T Consensus 128 pETEE~V~~Vid~~~~~~--~~~~~--~ildlgtGSGaIslsll~~L~~~---~v~AiD~S~~Ai~La~eN~qr~~l~g~ 200 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSE--HSKHT--HILDLGTGSGAISLSLLHGLPQC---TVTAIDVSKAAIKLAKENAQRLKLSGR 200 (328)
T ss_pred ccHHHHHHHHHHHHhhhh--hcccc--eEEEecCCccHHHHHHHhcCCCc---eEEEEeccHHHHHHHHHHHHHHhhcCc
Confidence 358999998865443221 22222 7999999999888777532 22 23455543 44443333 344
Q ss_pred ccccccc--cccCCCCC---CccccccccCccccccC-----CCC----------CCCCCC--ccceeeeecccccCCCe
Q 017068 270 IGVYHDW--CEPFSTYP---RTYDLIHVSGIESLIKN-----PGS----------NKNSCS--LVDLMVEMDRMLRPEGT 327 (378)
Q Consensus 270 ig~~~~w--~~~f~typ---rtyDliH~~~~~~~~~~-----~~~----------~~~~c~--~~~~l~EmDRiLRPgG~ 327 (378)
|++.|.- -+.|-+|| ..+|+|-|+--...-.| +++ .+..|. +-.+..=.-|.|+|||+
T Consensus 201 i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~ 280 (328)
T KOG2904|consen 201 IEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGF 280 (328)
T ss_pred eEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCe
Confidence 7777662 33355666 79999888743221110 000 011111 11444556799999999
Q ss_pred EEEeCC-----HHHHHHHHHH-HhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068 328 VVVRDS-----PEVIDKVSRI-ANTVRWTAAVHDKEPGSNGREKILVATK 371 (378)
Q Consensus 328 ~ii~d~-----~~~~~~~~~~-~~~l~W~~~~~~~~~~~~~~e~~l~~~K 371 (378)
+++.-. ...+..+..- .+.--|.+.+. .+ -.+.+++++..+
T Consensus 281 ~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~-~D--f~~~~Rfv~i~r 327 (328)
T KOG2904|consen 281 EQLELVERKEHSYLVRIWMISLKDDSNGKAAVV-SD--FAGRPRFVIIHR 327 (328)
T ss_pred EEEEecccccCcHHHHHHHHhchhhccchhhee-ec--ccCCcceEEEEe
Confidence 999732 2344444333 33333444332 22 246778877654
No 271
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=93.88 E-value=0.16 Score=47.65 Aligned_cols=76 Identities=26% Similarity=0.345 Sum_probs=53.9
Q ss_pred cCCCCChHHHHHHHHH----cCCC--eEEEEcccCCCCCCCCceeEEEecCc-----cccccC--ChHHHHHHHhhcccC
Q 017068 11 FAPRDSHKAQIQFALE----RGIP--AFVAMLGTRRLPFPAFSFDIVHCSRC-----LIPFTA--YNATYLIEVDRLLRP 77 (378)
Q Consensus 11 ~ap~D~se~~vq~A~e----rg~~--~~~~v~dae~LPfpd~SFD~V~cs~~-----l~hw~~--~~~~~L~Ev~RVLkP 77 (378)
+...|.|+..|..|+. ++.+ +.|.++|+..-.|-.+.||+|+---+ |+.-.. ....++.-+.+.|+|
T Consensus 94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~ 173 (227)
T KOG1271|consen 94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP 173 (227)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC
Confidence 4567888888887765 4666 78899998777888999999963222 221111 112577889999999
Q ss_pred CcEEEEEcC
Q 017068 78 GGYLVISGP 86 (378)
Q Consensus 78 GG~lvis~p 86 (378)
||.|+|+.=
T Consensus 174 ~gifvItSC 182 (227)
T KOG1271|consen 174 GGIFVITSC 182 (227)
T ss_pred CcEEEEEec
Confidence 999999864
No 272
>PLN02366 spermidine synthase
Probab=93.87 E-value=0.099 Score=52.11 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=57.1
Q ss_pred cCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh------cc----cc-ccccccccCCCC-CCc
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR------GL----IG-VYHDWCEPFSTY-PRT 286 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~w~~~f~ty-prt 286 (378)
.....-++||++|||.|+.+..+++++- +..|+-++-. ..+.++-+. |+ +- +..|=.+-.... ++.
T Consensus 87 ~~~~~pkrVLiIGgG~G~~~rellk~~~-v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 87 CSIPNPKKVLVVGGGDGGVLREIARHSS-VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred hhCCCCCeEEEEcCCccHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 3345678999999999999988887641 2333333322 222222111 11 11 111211101122 368
Q ss_pred cccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 287 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 287 yDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
||+|-++. +... .+...---..++-.+-|.|+|||.++...
T Consensus 166 yDvIi~D~-~dp~----~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 166 YDAIIVDS-SDPV----GPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCEEEEcC-CCCC----CchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99998753 2211 11000001356678899999999998753
No 273
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.74 E-value=0.14 Score=51.47 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=48.1
Q ss_pred eEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068 6 ILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY 80 (378)
Q Consensus 6 v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~ 80 (378)
|+++++. +.+++.|+++ |.. +.+..+|+...+.+.+.||+|++...+.+ ....+.++|+|||.
T Consensus 108 VvgVDis-----~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~ 175 (322)
T PRK13943 108 VVSVEYS-----RKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGR 175 (322)
T ss_pred EEEEECC-----HHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchHH-------hHHHHHHhcCCCCE
Confidence 5666555 5777777663 443 56677887776666688999998765433 23457889999999
Q ss_pred EEEEc
Q 017068 81 LVISG 85 (378)
Q Consensus 81 lvis~ 85 (378)
+++..
T Consensus 176 Lvv~~ 180 (322)
T PRK13943 176 VIVPI 180 (322)
T ss_pred EEEEe
Confidence 98854
No 274
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=93.73 E-value=0.1 Score=49.74 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHcCCC-----eEEEEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEE
Q 017068 15 DSHKAQIQFALERGIP-----AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 15 D~se~~vq~A~erg~~-----~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis 84 (378)
+..+..++.|++.-.+ ..+...+.+..--+.+.||+|.|-.|+-|.+|.+ -.+|+-....|+|||.+++-
T Consensus 85 Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 85 EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 4567888888864211 3445556665544468999999999999999976 68999999999999999983
No 275
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=93.57 E-value=0.035 Score=54.30 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=64.7
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc-----cc-------ccccccccCCCCCCccccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-----IG-------VYHDWCEPFSTYPRTYDLIHV 292 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl-----ig-------~~~~w~~~f~typrtyDliH~ 292 (378)
|+|||+|||.|-+.-.|....- +|+-.|.+ .++.++-+.-- .+ ..|.=-|.+- -.||.|.|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeee
Confidence 6699999999999988888876 77888887 67766655411 11 1111112211 23999999
Q ss_pred cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068 293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 333 (378)
Q Consensus 293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~ 333 (378)
+-++.+.++ ...++-=+=+.|+|||-++|+.-
T Consensus 165 sevleHV~d---------p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 165 SEVLEHVKD---------PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHHHhC---------HHHHHHHHHHHhCCCCceEeeeh
Confidence 988887762 23455566789999999999863
No 276
>PHA03412 putative methyltransferase; Provisional
Probab=93.54 E-value=0.021 Score=55.05 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=56.4
Q ss_pred eEEEecCCcceeeeeeccCC----CeeEEEeccCCCC-cchHHHHhhcccc---ccccccccCCCCCCccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKS-STLSVIYDRGLIG---VYHDWCEPFSTYPRTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~----~vwvmnv~p~~~~-~~l~~i~eRGlig---~~~~w~~~f~typrtyDliH~~~~~~ 297 (378)
..|||+|||+|.|+.++..+ + ..+|..++-. ..+..+.+. +.. ...|... + ..+.+||+|-+.--|.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~--~~~V~aVEID~~Al~~Ar~n-~~~~~~~~~D~~~-~-~~~~~FDlIIsNPPY~ 125 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAK--PREIVCVELNHTYYKLGKRI-VPEATWINADALT-T-EFDTLFDMAISNPPFG 125 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCC--CcEEEEEECCHHHHHHHHhh-ccCCEEEEcchhc-c-cccCCccEEEECCCCC
Confidence 37999999999999877542 1 1256666654 555544432 211 1222222 1 1245899999998877
Q ss_pred cccCCCCCCCC---CCccc-eeeeecccccCCCeEEE
Q 017068 298 LIKNPGSNKNS---CSLVD-LMVEMDRMLRPEGTVVV 330 (378)
Q Consensus 298 ~~~~~~~~~~~---c~~~~-~l~EmDRiLRPgG~~ii 330 (378)
.....+. ..+ ..+.. ++-..-|+||||++ |+
T Consensus 126 ~~~~~d~-~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 126 KIKTSDF-KGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred Ccccccc-CCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 5542111 122 22223 44455678999887 55
No 277
>PRK13699 putative methylase; Provisional
Probab=93.44 E-value=0.11 Score=49.35 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=33.0
Q ss_pred EEEcccCCC--CCCCCceeEEEecC----ccccccC----------ChHHHHHHHhhcccCCcEEEEE
Q 017068 33 VAMLGTRRL--PFPAFSFDIVHCSR----CLIPFTA----------YNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 33 ~~v~dae~L--Pfpd~SFD~V~cs~----~l~hw~~----------~~~~~L~Ev~RVLkPGG~lvis 84 (378)
+..+|+.++ .+||+|+|+|+..= ...+... --...+.|+.|||||||.+++.
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 345565333 57889999988651 0001000 0136889999999999999864
No 278
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=93.28 E-value=0.024 Score=56.87 Aligned_cols=87 Identities=20% Similarity=0.114 Sum_probs=48.6
Q ss_pred eEEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHh----hccc--c-ccccccccCCCCCCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGLI--G-VYHDWCEPFSTYPRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~e----RGli--g-~~~~w~~~f~typrtyDliH~~~ 294 (378)
..|||+|||+|.+++.|... .-. |+-.|.. ..+..+-+ .|+- - +..|-.+..+ ....||+|.++.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~---VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-~~~~fD~Ii~~~ 157 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGL---VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-EFAPYDVIFVTV 157 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCE---EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-ccCCccEEEECC
Confidence 47999999999999888642 111 2333433 44433332 3431 1 1223222222 225699998853
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
-.. .+.-.+-|.|+|||.+++-
T Consensus 158 g~~---------------~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 158 GVD---------------EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred chH---------------HhHHHHHHhcCCCCEEEEE
Confidence 222 1222356799999998874
No 279
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=93.27 E-value=0.23 Score=48.31 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHc----CC-C-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCC
Q 017068 15 DSHKAQIQFALER----GI-P-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 87 (378)
Q Consensus 15 D~se~~vq~A~er----g~-~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp 87 (378)
+..+...+.|+++ |+ . +.+...|..+.-+++ .||+|+. ..++++ .++..+..+|||||.+++-.|.
T Consensus 126 E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L-----Dmp~PW-~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 126 EIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL-----DLPDPW-NVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred EecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE-----cCCChH-HHHHHHHHHhCCCcEEEEEcCC
Confidence 3457888888886 32 2 556677877766666 9999974 668888 9999999999999999998773
No 280
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=93.19 E-value=0.17 Score=50.31 Aligned_cols=72 Identities=22% Similarity=0.385 Sum_probs=47.3
Q ss_pred CCeEEEecCCCCChHHHHHHHHH----cCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068 4 ENILTLSFAPRDSHKAQIQFALE----RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 79 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~e----rg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG 79 (378)
+.|+|+|+.| ..++.|++ +|+...+.+.. ...++...||+|+++-.. +.-...+..+.++|+|||
T Consensus 185 ~~v~a~DiDp-----~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G 253 (295)
T PF06325_consen 185 KKVVAIDIDP-----LAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILA----DVLLELAPDIASLLKPGG 253 (295)
T ss_dssp SEEEEEESSC-----HHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-H----HHHHHHHHHCHHHEEEEE
T ss_pred CeEEEecCCH-----HHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCH----HHHHHHHHHHHHhhCCCC
Confidence 4688999988 44555555 46655444432 234456999999986432 122366778999999999
Q ss_pred EEEEEcC
Q 017068 80 YLVISGP 86 (378)
Q Consensus 80 ~lvis~p 86 (378)
+|++|+-
T Consensus 254 ~lIlSGI 260 (295)
T PF06325_consen 254 YLILSGI 260 (295)
T ss_dssp EEEEEEE
T ss_pred EEEEccc
Confidence 9999985
No 281
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=93.19 E-value=0.51 Score=49.18 Aligned_cols=91 Identities=16% Similarity=0.104 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHc----CCCeEEEEcccCCCCCC-CCceeEEEecCcccccc--------------------CCh----
Q 017068 14 RDSHKAQIQFALER----GIPAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFT--------------------AYN---- 64 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~~~~~~v~dae~LPfp-d~SFD~V~cs~~l~hw~--------------------~~~---- 64 (378)
.|+|+.+++.|+++ +..+.+..+|.....++ +++||+|+|+-=.+.-. +++
T Consensus 281 VDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~y 360 (423)
T PRK14966 281 SDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCI 360 (423)
T ss_pred EECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHH
Confidence 34456888888774 45567777886544443 46899999964211100 000
Q ss_pred HHHHHHHhhcccCCcEEEEEcCCCCCCccchHHHHHHHHHHHhceee
Q 017068 65 ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 111 (378)
Q Consensus 65 ~~~L~Ev~RVLkPGG~lvis~pp~~~~~~~~~w~~l~~l~~~lcw~~ 111 (378)
...+.++.+.|+|||.+++.... + + -+.+..+.....|..
T Consensus 361 r~Ii~~a~~~LkpgG~lilEiG~-~-----Q-~e~V~~ll~~~Gf~~ 400 (423)
T PRK14966 361 RTLAQGAPDRLAEGGFLLLEHGF-D-----Q-GAAVRGVLAENGFSG 400 (423)
T ss_pred HHHHHHHHHhcCCCcEEEEEECc-c-----H-HHHHHHHHHHCCCcE
Confidence 15666778899999999875431 1 1 134555555544543
No 282
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=93.13 E-value=0.1 Score=50.04 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=82.3
Q ss_pred hcCCCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHhhcc-----ccccccccccCCCCCCcccccc
Q 017068 219 KLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL-----IGVYHDWCEPFSTYPRTYDLIH 291 (378)
Q Consensus 219 ~~~~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~eRGl-----ig~~~~w~~~f~typrtyDliH 291 (378)
.|.....|.|.|+|||.|--...|..+ |.= -|.-.|++ ++|.-+.+|+. .|=+++||-. +..|||.
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A--~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~~dllf 97 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWPDA--VITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QPTDLLF 97 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCCCC--eEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Cccchhh
Confidence 356678999999999999888877643 220 13566777 99999999998 5888999942 6679999
Q ss_pred ccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH----HHHHHHHHHHhcCCceEEE
Q 017068 292 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----EVIDKVSRIANTVRWTAAV 353 (378)
Q Consensus 292 ~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~----~~~~~~~~~~~~l~W~~~~ 353 (378)
++-+|.-+- .+--.+..+| --|+|||.+-+.-+. ..-.-|.+.++..-|....
T Consensus 98 aNAvlqWlp-----dH~~ll~rL~----~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l 154 (257)
T COG4106 98 ANAVLQWLP-----DHPELLPRLV----SQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQEL 154 (257)
T ss_pred hhhhhhhcc-----ccHHHHHHHH----HhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhh
Confidence 998887442 2322222333 358999999998432 2334466677776776544
No 283
>PRK03612 spermidine synthase; Provisional
Probab=93.12 E-value=0.14 Score=54.51 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=50.7
Q ss_pred CeEEEecCCCCChHHHHHHHHHc------------CCCeEEEEcccCC-CCCCCCceeEEEecCccccccCC-----hHH
Q 017068 5 NILTLSFAPRDSHKAQIQFALER------------GIPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY-----NAT 66 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er------------g~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~-----~~~ 66 (378)
.|+++++. +++++.|++. ...+.+..+|+.+ +...+++||+|++... .+.... ...
T Consensus 323 ~v~~VEid-----~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~-~~~~~~~~~L~t~e 396 (521)
T PRK03612 323 QVTLVDLD-----PAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP-DPSNPALGKLYSVE 396 (521)
T ss_pred eEEEEECC-----HHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC-CCCCcchhccchHH
Confidence 45555555 6899999883 1235667777654 3334579999998643 222111 125
Q ss_pred HHHHHhhcccCCcEEEEEcC
Q 017068 67 YLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 67 ~L~Ev~RVLkPGG~lvis~p 86 (378)
+++++.|.|||||.+++...
T Consensus 397 f~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 397 FYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred HHHHHHHhcCCCeEEEEecC
Confidence 78999999999999998654
No 284
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=93.01 E-value=0.35 Score=50.20 Aligned_cols=128 Identities=16% Similarity=0.251 Sum_probs=72.1
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--c-cccccccccCCC--C-CCccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--I-GVYHDWCEPFST--Y-PRTYDLIHVSG 294 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--i-g~~~~w~~~f~t--y-prtyDliH~~~ 294 (378)
..|||+|||+|.|+.+|..+.. .|+..|.+ .++..+-+. |+ + =...|+.+.++. + +.+||+|-++-
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 4799999999999999987753 56777766 666554432 33 1 122333332222 2 35799987642
Q ss_pred ccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHH-HHHHHHHHhcCCceEEE---ecCCCCCCCCeEEEEEE
Q 017068 295 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV-IDKVSRIANTVRWTAAV---HDKEPGSNGREKILVAT 370 (378)
Q Consensus 295 ~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~-~~~~~~~~~~l~W~~~~---~~~~~~~~~~e~~l~~~ 370 (378)
.+..+..++-.+-+ |.|++.++++=+..+ -..++.+.+ --|++.. .|-=+.+..=|-|.+-+
T Consensus 376 ------------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~HvE~v~lL~ 441 (443)
T PRK13168 376 ------------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHVESMALFE 441 (443)
T ss_pred ------------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcEEEEEEEE
Confidence 22223344433334 589999999955554 344555533 2366543 44433333335554443
No 285
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.93 E-value=0.067 Score=48.97 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=35.0
Q ss_pred CCceeEEEecCcccccc--------CC--hHHHHHHHhhcccCCcEEEEEcC
Q 017068 45 AFSFDIVHCSRCLIPFT--------AY--NATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 45 d~SFD~V~cs~~l~hw~--------~~--~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.++||.+.|..++.|.. ++ +.++++++.|+|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 46899999988888873 11 23899999999999999999988
No 286
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=92.90 E-value=0.024 Score=58.33 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=64.8
Q ss_pred eEEEecCCcceeeeeecc-CCCeeEEEeccCCCC-cchHHHHh----hccc-c----ccccccccCCCC---CCcccccc
Q 017068 226 RNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKS-STLSVIYD----RGLI-G----VYHDWCEPFSTY---PRTYDLIH 291 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~-~~~vwvmnv~p~~~~-~~l~~i~e----RGli-g----~~~~w~~~f~ty---prtyDliH 291 (378)
++|||++||+|+|+-+.+ ...- .|+.+|.+ ..+..+-+ -|+- . +..|..+.+..+ .++||+|-
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~---~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCS---QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 679999999999985533 3232 34555654 44443322 2331 1 112222212222 35899999
Q ss_pred ccCcc-ccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC------HHHHHHHHHHHhcCCceEEE
Q 017068 292 VSGIE-SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------PEVIDKVSRIANTVRWTAAV 353 (378)
Q Consensus 292 ~~~~~-~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~------~~~~~~~~~~~~~l~W~~~~ 353 (378)
++--+ ..-+ .........+..++.-.-++|+|||.++.... ....+.+.+-+..-.-++++
T Consensus 299 lDPP~f~~~k-~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~ 366 (396)
T PRK15128 299 MDPPKFVENK-SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQF 366 (396)
T ss_pred ECCCCCCCCh-HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 87432 1100 00000002234444556689999999998542 23555556556666556554
No 287
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=92.87 E-value=0.2 Score=48.77 Aligned_cols=40 Identities=35% Similarity=0.527 Sum_probs=33.3
Q ss_pred ceeEEEecCccccccCCh---HHHHHHHhhcccCCcEEEEEcC
Q 017068 47 SFDIVHCSRCLIPFTAYN---ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 47 SFD~V~cs~~l~hw~~~~---~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.||+|++.+|+.-...+. ..+++.+.+.|||||.|++.+-
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 599999999998776543 4899999999999999998643
No 288
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=92.82 E-value=0.087 Score=51.07 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=62.8
Q ss_pred EEEecCCcceeeeeeccCC--C--eeEEEeccCC-CCcchHHHHhhcc------cccccccccc---CCCCCCccccccc
Q 017068 227 NIMDMNAFFGGFAAALTSD--P--VWVMNVVPAR-KSSTLSVIYDRGL------IGVYHDWCEP---FSTYPRTYDLIHV 292 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~--~--vwvmnv~p~~-~~~~l~~i~eRGl------ig~~~~w~~~---f~typrtyDliH~ 292 (378)
+||.+|||.|.----|+.- + +-+ -.-| +++.+.++-++-- -+..+|.+.+ -|..+.+.|.|-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v---~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKV---YACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEE---EEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 8999999999765555421 2 322 3333 2244443332221 2344444443 2344589999999
Q ss_pred cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
-.++|... .-.+...+-.+-|+|+|||.+++||
T Consensus 151 IFvLSAi~-------pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 151 IFVLSAIH-------PEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EEEEeccC-------hHHHHHHHHHHHHHhCCCcEEEEee
Confidence 99999774 3346788889999999999999997
No 289
>PLN02476 O-methyltransferase
Probab=92.31 E-value=0.079 Score=52.17 Aligned_cols=133 Identities=11% Similarity=0.118 Sum_probs=72.9
Q ss_pred CCCeeEEEecCCcceeeeeeccC----CC-eeEEEeccCCCCcchHHHHhhccc---c-ccccccccCCCC-----CCcc
Q 017068 222 TPAIRNIMDMNAFFGGFAAALTS----DP-VWVMNVVPARKSSTLSVIYDRGLI---G-VYHDWCEPFSTY-----PRTY 287 (378)
Q Consensus 222 ~~~iR~vlDm~ag~g~faa~L~~----~~-vwvmnv~p~~~~~~l~~i~eRGli---g-~~~~w~~~f~ty-----prty 287 (378)
..+-++||++|+++|..+.+|.. .. |.++=.-|....-.-+.+-+-|+- = ...+-.+.++.. +.+|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 34578999999999998887753 22 333222221111111333344441 1 011112222221 3579
Q ss_pred ccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-------------HH--HHHHH-HHHHhcCCceE
Q 017068 288 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------------PE--VIDKV-SRIANTVRWTA 351 (378)
Q Consensus 288 DliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-------------~~--~~~~~-~~~~~~l~W~~ 351 (378)
|+|-.+.-=. +...++-+.=++|||||.+|+.+. .. .+.++ +.+...=+++.
T Consensus 196 D~VFIDa~K~------------~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~ 263 (278)
T PLN02476 196 DFAFVDADKR------------MYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSI 263 (278)
T ss_pred CEEEECCCHH------------HHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9988763322 224556666689999999999742 11 12222 33466667888
Q ss_pred EEecCCCCCCCCeEEEEEEec
Q 017068 352 AVHDKEPGSNGREKILVATKS 372 (378)
Q Consensus 352 ~~~~~~~~~~~~e~~l~~~K~ 372 (378)
.+... .+++++++|+
T Consensus 264 ~llPi------gDGl~i~~K~ 278 (278)
T PLN02476 264 SMVPI------GDGMTICRKR 278 (278)
T ss_pred EEEEe------CCeeEEEEEC
Confidence 77654 3578998885
No 290
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=92.30 E-value=0.26 Score=47.69 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHcC---------CCeEEEEcccCC-CCCCCCceeEEEecCccccccCC----hHHHHHHHhhcccCCcE
Q 017068 15 DSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY----NATYLIEVDRLLRPGGY 80 (378)
Q Consensus 15 D~se~~vq~A~erg---------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~----~~~~L~Ev~RVLkPGG~ 80 (378)
|+++.+++.|++.- ..+.+..+|+.+ +.-.++.||+|++... .+.... ...+++.+.+.|+|||.
T Consensus 103 eid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~ 181 (270)
T TIGR00417 103 DIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDST-DPVGPAETLFTKEFYELLKKALNEDGI 181 (270)
T ss_pred eCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCC-CCCCcccchhHHHHHHHHHHHhCCCcE
Confidence 44467888887741 123455555422 2223579999997543 222221 23678999999999999
Q ss_pred EEEEcC
Q 017068 81 LVISGP 86 (378)
Q Consensus 81 lvis~p 86 (378)
+++...
T Consensus 182 lv~~~~ 187 (270)
T TIGR00417 182 FVAQSE 187 (270)
T ss_pred EEEcCC
Confidence 998744
No 291
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=92.29 E-value=0.36 Score=45.71 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=47.0
Q ss_pred CeEEEecCCCCChHHHHHHH-HHcCC----------------CeEEEEcccCCCCCCC-CceeEEEecCccccccCC-hH
Q 017068 5 NILTLSFAPRDSHKAQIQFA-LERGI----------------PAFVAMLGTRRLPFPA-FSFDIVHCSRCLIPFTAY-NA 65 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A-~erg~----------------~~~~~v~dae~LPfpd-~SFD~V~cs~~l~hw~~~-~~ 65 (378)
+|++++++ +..|+.| .+++. .+.+.++|.-.++-.+ +.||+|.=.-+++-++.. ..
T Consensus 61 ~VvGvDls-----~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~ 135 (218)
T PF05724_consen 61 DVVGVDLS-----PTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRE 135 (218)
T ss_dssp EEEEEES------HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHH
T ss_pred eEEEEecC-----HHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHH
Confidence 56666666 5677776 34443 1245677876766443 479999855555444433 35
Q ss_pred HHHHHHhhcccCCcEEE
Q 017068 66 TYLIEVDRLLRPGGYLV 82 (378)
Q Consensus 66 ~~L~Ev~RVLkPGG~lv 82 (378)
+..+.+.++|||||.++
T Consensus 136 ~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 136 RYAQQLASLLKPGGRGL 152 (218)
T ss_dssp HHHHHHHHCEEEEEEEE
T ss_pred HHHHHHHHHhCCCCcEE
Confidence 89999999999999943
No 292
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=92.26 E-value=0.16 Score=47.95 Aligned_cols=133 Identities=18% Similarity=0.258 Sum_probs=83.0
Q ss_pred EEEecCCcceeeeeeccC-CCeeEEEeccCCCC-cch----HHHHhhccc----cc----ccc-cc--ccCCCCCCcccc
Q 017068 227 NIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STL----SVIYDRGLI----GV----YHD-WC--EPFSTYPRTYDL 289 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~-~~vwvmnv~p~~~~-~~l----~~i~eRGli----g~----~~~-w~--~~f~typrtyDl 289 (378)
.||.+|+|+|--|+++.. .|- +---|+|.. +.+ .-+.+.|+. .+ -.+ |. .+-+.++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 899999999987766642 121 134677765 222 234566662 12 222 32 223346789999
Q ss_pred ccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC---------------------------HHHHHHHHH
Q 017068 290 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS---------------------------PEVIDKVSR 342 (378)
Q Consensus 290 iH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~---------------------------~~~~~~~~~ 342 (378)
|-|..++.-- .+.| .+-++-+.-|+|+|||.+++-++ ..-++.|++
T Consensus 106 i~~~N~lHI~------p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~ 178 (204)
T PF06080_consen 106 IFCINMLHIS------PWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEA 178 (204)
T ss_pred eeehhHHHhc------CHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHH
Confidence 9998875321 1223 26788999999999999999531 124677888
Q ss_pred HHhcCCceEEEecCCCCCCCCeEEEEEEe
Q 017068 343 IANTVRWTAAVHDKEPGSNGREKILVATK 371 (378)
Q Consensus 343 ~~~~l~W~~~~~~~~~~~~~~e~~l~~~K 371 (378)
+|.+-..+.... .+ -| ...++||.+|
T Consensus 179 lA~~~GL~l~~~-~~-MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 179 LAAAHGLELEED-ID-MP-ANNLLLVFRK 204 (204)
T ss_pred HHHHCCCccCcc-cc-cC-CCCeEEEEeC
Confidence 888877776431 11 22 2357888876
No 293
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=91.85 E-value=0.099 Score=46.71 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=51.6
Q ss_pred eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhcc----cccc-ccccccCCCCC-CccccccccCccc
Q 017068 225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL----IGVY-HDWCEPFSTYP-RTYDLIHVSGIES 297 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGl----ig~~-~~w~~~f~typ-rtyDliH~~~~~~ 297 (378)
-.+|+|+|||.|.++..|+++.- .|+..|.. ..++.+-++-- +-++ .|.. .++ ++ ..||.|-++--+.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~-~~~-~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDAL-KFD-LPKLQPYKVVGNLPYN 88 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchh-cCC-ccccCCCEEEECCCcc
Confidence 34899999999999999998753 45666655 55555544421 1122 2222 222 23 3578775543222
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
. ..--+.. +++... +.++|++++..
T Consensus 89 ~--------~~~~i~~-~l~~~~-~~~~~~l~~q~ 113 (169)
T smart00650 89 I--------STPILFK-LLEEPP-AFRDAVLMVQK 113 (169)
T ss_pred c--------HHHHHHH-HHhcCC-CcceEEEEEEH
Confidence 1 0111222 334322 56899998874
No 294
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=91.80 E-value=0.23 Score=45.39 Aligned_cols=71 Identities=23% Similarity=0.355 Sum_probs=47.4
Q ss_pred CCCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCccccccCCh----------HHHHHHHhhcc
Q 017068 12 APRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN----------ATYLIEVDRLL 75 (378)
Q Consensus 12 ap~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~----------~~~L~Ev~RVL 75 (378)
...|+++.+++.|+++ |+. +.+...|+.++|+++++||.|+|.- +|-..- ..+++|+.|+|
T Consensus 65 ~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l 141 (179)
T PF01170_consen 65 IGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVL 141 (179)
T ss_dssp EEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHS
T ss_pred EecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHC
Confidence 3456667788777775 443 5678889999999999999999863 332211 25689999999
Q ss_pred cCCcEEEEEc
Q 017068 76 RPGGYLVISG 85 (378)
Q Consensus 76 kPGG~lvis~ 85 (378)
++...++++.
T Consensus 142 ~~~~v~l~~~ 151 (179)
T PF01170_consen 142 KPRAVFLTTS 151 (179)
T ss_dssp TTCEEEEEES
T ss_pred CCCEEEEEEC
Confidence 9955555554
No 295
>PLN02366 spermidine synthase
Probab=91.63 E-value=1 Score=44.96 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHcC---------CCeEEEEcccCCC--CCCCCceeEEEecCccccccCC----hHHHHHHHhhcccCCc
Q 017068 15 DSHKAQIQFALERG---------IPAFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAY----NATYLIEVDRLLRPGG 79 (378)
Q Consensus 15 D~se~~vq~A~erg---------~~~~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~~~----~~~~L~Ev~RVLkPGG 79 (378)
|+.+.+++.|++.- ..+.+..+|+... ..+++.||+|++-. ..++... ...+++.+.+.|+|||
T Consensus 122 EiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgG 200 (308)
T PLN02366 122 EIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDS-SDPVGPAQELFEKPFFESVARALRPGG 200 (308)
T ss_pred ECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCc
Confidence 34468888888741 2356677775321 13467899999743 2332221 1367899999999999
Q ss_pred EEEEEc
Q 017068 80 YLVISG 85 (378)
Q Consensus 80 ~lvis~ 85 (378)
.++...
T Consensus 201 vlv~q~ 206 (308)
T PLN02366 201 VVCTQA 206 (308)
T ss_pred EEEECc
Confidence 998743
No 296
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=91.33 E-value=0.54 Score=44.77 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=46.8
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEEcccCCC-C-----CCCCceeEEEecCccccccCChHHHHHHHh
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRL-P-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVD 72 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v~dae~L-P-----fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~ 72 (378)
.|+|+++.| ..++.|++. |+. +.+..+++... + .++++||+|++-.- .+.-..++.++.
T Consensus 95 ~v~tiD~d~-----~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~ 165 (234)
T PLN02781 95 RITAIDIDK-----EAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLL 165 (234)
T ss_pred EEEEEECCH-----HHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHH
Confidence 467777765 555555553 543 56677776432 2 23578999987421 122237889999
Q ss_pred hcccCCcEEEEEc
Q 017068 73 RLLRPGGYLVISG 85 (378)
Q Consensus 73 RVLkPGG~lvis~ 85 (378)
+.|||||.+++-.
T Consensus 166 ~ll~~GG~ii~dn 178 (234)
T PLN02781 166 KLVKVGGIIAFDN 178 (234)
T ss_pred HhcCCCeEEEEEc
Confidence 9999999998743
No 297
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=91.27 E-value=0.38 Score=45.90 Aligned_cols=71 Identities=27% Similarity=0.325 Sum_probs=48.0
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC--eEEEE-ccc-CCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcc
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP--AFVAM-LGT-RRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLL 75 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~--~~~~v-~da-e~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL 75 (378)
.++|+++.| .+++.|++. |+. +.+.. +|+ +.|- +.+++||+|+.- +....-..++.++.+.|
T Consensus 86 ~l~tiE~~~-----e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lL 156 (219)
T COG4122 86 RLTTIERDE-----ERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLL 156 (219)
T ss_pred eEEEEeCCH-----HHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHh
Confidence 477777774 677777764 443 33444 353 2222 668999999853 33333348999999999
Q ss_pred cCCcEEEEE
Q 017068 76 RPGGYLVIS 84 (378)
Q Consensus 76 kPGG~lvis 84 (378)
||||.+++-
T Consensus 157 r~GGliv~D 165 (219)
T COG4122 157 RPGGLIVAD 165 (219)
T ss_pred CCCcEEEEe
Confidence 999999974
No 298
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=90.88 E-value=0.17 Score=51.03 Aligned_cols=54 Identities=11% Similarity=0.125 Sum_probs=35.9
Q ss_pred CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC--CHHHHHHHHHH
Q 017068 285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD--SPEVIDKVSRI 343 (378)
Q Consensus 285 rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d--~~~~~~~~~~~ 343 (378)
..||++-|-.+|.+-- .+.+.. ...|.-+=+-|||||+||=.- ...++.+++..
T Consensus 195 p~fDivScQF~~HYaF-etee~a----r~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAF-ETEESA----RIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCcceeeeeeeEeeee-ccHHHH----HHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 3499999988876432 011122 345667788999999999874 44577777654
No 299
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=90.77 E-value=0.6 Score=45.58 Aligned_cols=45 Identities=27% Similarity=0.521 Sum_probs=33.1
Q ss_pred CCCCCCceeEEEecCcc----ccccCCh-HHHHHHHhhcccCCcEEEEEc
Q 017068 41 LPFPAFSFDIVHCSRCL----IPFTAYN-ATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 41 LPfpd~SFD~V~cs~~l----~hw~~~~-~~~L~Ev~RVLkPGG~lvis~ 85 (378)
|-+....||+|.|...- .+|.|++ ..+++.+.|.|.|||+|++-.
T Consensus 160 l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 160 LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 34566789999985421 2345554 478999999999999999854
No 300
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=90.48 E-value=0.5 Score=45.83 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=49.3
Q ss_pred CChHHHHHHHHHc----CCC--eEEEEcccCCCCCC---CCceeEEEecCccccccCChHHHHHHHhhcc-cCCcEEEEE
Q 017068 15 DSHKAQIQFALER----GIP--AFVAMLGTRRLPFP---AFSFDIVHCSRCLIPFTAYNATYLIEVDRLL-RPGGYLVIS 84 (378)
Q Consensus 15 D~se~~vq~A~er----g~~--~~~~v~dae~LPfp---d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL-kPGG~lvis 84 (378)
|.++..++.|++. |+. +.+...|..+-.|+ ++.||+|+. ..+++. .++..+.++| ||||++++-
T Consensus 72 E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw-~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 72 EFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPW-EAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGG-GGHHHHHHHE-EEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEE-----eCCCHH-HHHHHHHHHHhcCCceEEEE
Confidence 3567888888775 553 67778887655564 368999974 678888 9999999999 999999987
Q ss_pred cC
Q 017068 85 GP 86 (378)
Q Consensus 85 ~p 86 (378)
.|
T Consensus 146 sP 147 (247)
T PF08704_consen 146 SP 147 (247)
T ss_dssp ES
T ss_pred CC
Confidence 77
No 301
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=90.31 E-value=0.59 Score=43.64 Aligned_cols=139 Identities=17% Similarity=0.211 Sum_probs=79.5
Q ss_pred cCccccccc--hHHHHHHHHH-HHHHhhhhcCCCCeeEEEecCCcceeeeeecc--CCCeeEEEeccCCCC----cchHH
Q 017068 193 NGYDVFEAD--SRRWRRRVAY-YKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKS----STLSV 263 (378)
Q Consensus 193 ~~~~~F~~d--~~~w~~~v~~-Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~--~~~vwvmnv~p~~~~----~~l~~ 263 (378)
+..+.|..| ...=|+-|.. -+..|. +..|. .++|+|||+||-+--+. ...- -|...+.. .+++.
T Consensus 4 ipD~~F~~~~~~p~TK~EIRal~ls~L~--~~~g~--~l~DIGaGtGsi~iE~a~~~p~~---~v~AIe~~~~a~~~~~~ 76 (187)
T COG2242 4 IPDELFERDEGGPMTKEEIRALTLSKLR--PRPGD--RLWDIGAGTGSITIEWALAGPSG---RVIAIERDEEALELIER 76 (187)
T ss_pred CCchhhccCCCCCCcHHHHHHHHHHhhC--CCCCC--EEEEeCCCccHHHHHHHHhCCCc---eEEEEecCHHHHHHHHH
Confidence 344556666 2222344433 223343 55665 79999999999875443 3332 33555543 22222
Q ss_pred HHhh-cc--ccccc-cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-CHHHHH
Q 017068 264 IYDR-GL--IGVYH-DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVID 338 (378)
Q Consensus 264 i~eR-Gl--ig~~~-~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-~~~~~~ 338 (378)
..+| |+ +-+.. +=-+.++..| ++|-|.-++- -+++.||--...-|||||-+|..- +.+...
T Consensus 77 N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg-------------~~i~~ile~~~~~l~~ggrlV~naitlE~~~ 142 (187)
T COG2242 77 NAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG-------------GNIEEILEAAWERLKPGGRLVANAITLETLA 142 (187)
T ss_pred HHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC-------------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHH
Confidence 2222 21 01111 1123355556 7776665432 456778888888999999999985 567777
Q ss_pred HHHHHHhcCCc-eEE
Q 017068 339 KVSRIANTVRW-TAA 352 (378)
Q Consensus 339 ~~~~~~~~l~W-~~~ 352 (378)
.+-+..+.+.+ ++.
T Consensus 143 ~a~~~~~~~g~~ei~ 157 (187)
T COG2242 143 KALEALEQLGGREIV 157 (187)
T ss_pred HHHHHHHHcCCceEE
Confidence 77777777888 554
No 302
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=90.27 E-value=0.056 Score=54.37 Aligned_cols=112 Identities=15% Similarity=0.226 Sum_probs=57.9
Q ss_pred CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhhc---------------ccccc--cc-----ccccC
Q 017068 224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG---------------LIGVY--HD-----WCEPF 280 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRG---------------lig~~--~~-----w~~~f 280 (378)
.-.+||||+||=||=----...++ =.++-.|-. ..|+-+.+|= +...+ .| ..+.|
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 567999999998872111111111 122333433 4454455554 11111 11 12224
Q ss_pred CCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe--CCHHHHHHHHH
Q 017068 281 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR--DSPEVIDKVSR 342 (378)
Q Consensus 281 ~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~--d~~~~~~~~~~ 342 (378)
++-.+.||+|=|--++.+-- ...-....+|--+-.-|||||+||.. |...++.++++
T Consensus 140 ~~~~~~FDvVScQFalHY~F-----ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAF-----ESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGG-----SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred cccCCCcceeehHHHHHHhc-----CCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 43346999998877666433 11222346888899999999999998 44445455554
No 303
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=90.17 E-value=1.9 Score=43.02 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=60.8
Q ss_pred CCCCChHHHHHHHHHc----CCCeEEEEcccCCCCCCCCceeEEEecCccccccCChH----HHHHHHhhcccCCcEEEE
Q 017068 12 APRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA----TYLIEVDRLLRPGGYLVI 83 (378)
Q Consensus 12 ap~D~se~~vq~A~er----g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~----~~L~Ev~RVLkPGG~lvi 83 (378)
...|++...|+.|++. ++.......+..-.+-.+ +||+|+|+==+|.=.+-.. +.+++..+.|++||.|.+
T Consensus 186 tmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 186 TLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred EEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 3457888889998875 344322233333445555 9999999864432222222 788999999999999988
Q ss_pred EcCCCCCCccchHHH-HHHHHHHHhceeeeccccceEEEe
Q 017068 84 SGPPVQWPKQDKEWA-DLQAVARALCYELIAVDGNTVIWK 122 (378)
Q Consensus 84 s~pp~~~~~~~~~w~-~l~~l~~~lcw~~~~~~~~~~iw~ 122 (378)
... ...+ ++ .|.++.. .-+.+++.+...|++
T Consensus 265 Van---~~l~---y~~~L~~~Fg--~v~~la~~~gf~Vl~ 296 (300)
T COG2813 265 VAN---RHLP---YEKKLKELFG--NVEVLAKNGGFKVLR 296 (300)
T ss_pred EEc---CCCC---hHHHHHHhcC--CEEEEEeCCCEEEEE
Confidence 654 1111 11 2333322 245566666666654
No 304
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.12 E-value=0.45 Score=46.05 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=73.5
Q ss_pred eeEEEecCCcceeeeeeccCCCeeEEEeccCCC-CcchHHHHhhcc-cccccc--ccccCC--CCCCccccccccCcccc
Q 017068 225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARK-SSTLSVIYDRGL-IGVYHD--WCEPFS--TYPRTYDLIHVSGIESL 298 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~-~~~l~~i~eRGl-ig~~~~--w~~~f~--typrtyDliH~~~~~~~ 298 (378)
=|++||+|+-+|||.-.|+.+..= =|...|- .+||--=+.-.. +=++-. -+.-.+ .+ .-.|++.|+-.|..
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFIS 156 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFIS 156 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehhh
Confidence 478999999999999988877320 1244443 366632222222 111100 000000 11 13589999988886
Q ss_pred ccCCCCCCCCCCccceeeeecccccCCCeEEEe-------------------CC---HHHHHHHHHHHhcCCceEEE
Q 017068 299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-------------------DS---PEVIDKVSRIANTVRWTAAV 353 (378)
Q Consensus 299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-------------------d~---~~~~~~~~~~~~~l~W~~~~ 353 (378)
++ .+|-.+..+|-|+|-++.. |+ ..+++++++.++.+.|.+.-
T Consensus 157 L~------------~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 157 LK------------LILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred HH------------HHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 64 6888999999999988875 22 35888999999999999864
No 305
>PLN02823 spermine synthase
Probab=89.43 E-value=0.58 Score=47.28 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=58.7
Q ss_pred HHHHhh--hhcCCCCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhhccccccc-------------
Q 017068 212 YKNTLN--VKLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDRGLIGVYH------------- 274 (378)
Q Consensus 212 Y~~~~~--~~~~~~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eRGlig~~~------------- 274 (378)
|-+.|. +++....-++||-+|+|.|+.+..+++.+ + ..|+-++-. ..++++-+. ++..+
T Consensus 89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~--~~~~~~~~~dprv~v~~~ 164 (336)
T PLN02823 89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKH--LTVNREAFCDKRLELIIN 164 (336)
T ss_pred HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHh--cccccccccCCceEEEEC
Confidence 444443 33444567899999999999988777643 4 234444433 344433222 11111
Q ss_pred cccccCCCCCCccccccccCccccccCCCCCCCCCC---ccceee-eecccccCCCeEEEe
Q 017068 275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCS---LVDLMV-EMDRMLRPEGTVVVR 331 (378)
Q Consensus 275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~---~~~~l~-EmDRiLRPgG~~ii~ 331 (378)
|=..-+..-+..||+|-++ ++.... .+ -|. -...+- .+.|.|+|||.+++.
T Consensus 165 Da~~~L~~~~~~yDvIi~D-~~dp~~----~~-~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 165 DARAELEKRDEKFDVIIGD-LADPVE----GG-PCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred hhHHHHhhCCCCccEEEec-CCCccc----cC-cchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 1000011224689999887 222211 00 010 012333 578999999999876
No 306
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=89.17 E-value=0.12 Score=48.62 Aligned_cols=132 Identities=18% Similarity=0.281 Sum_probs=72.9
Q ss_pred CCeeEEEecCCcceeeeeecc----C-CCeeEEEeccCCCCcchHHHHhhcc---ccc-cccccccCCCC-----CCccc
Q 017068 223 PAIRNIMDMNAFFGGFAAALT----S-DPVWVMNVVPARKSSTLSVIYDRGL---IGV-YHDWCEPFSTY-----PRTYD 288 (378)
Q Consensus 223 ~~iR~vlDm~ag~g~faa~L~----~-~~vwvmnv~p~~~~~~l~~i~eRGl---ig~-~~~w~~~f~ty-----prtyD 288 (378)
.+-++||.+|+++|==|.+|. + -.|+++-+-|....-.-+.+-.-|+ |-+ ..+..+.++.. +.+||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 467899999999985444443 2 2344444433222112233344455 222 22333333321 35899
Q ss_pred cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH-------------H--HHHH-HHHHHhcCCceEE
Q 017068 289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------------E--VIDK-VSRIANTVRWTAA 352 (378)
Q Consensus 289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~-------------~--~~~~-~~~~~~~l~W~~~ 352 (378)
+|-.+.-=..| ..++-..-+.|||||.+|+.+.. + .+.+ .+.+.+.=+.+..
T Consensus 124 ~VFiDa~K~~y------------~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~ 191 (205)
T PF01596_consen 124 FVFIDADKRNY------------LEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETV 191 (205)
T ss_dssp EEEEESTGGGH------------HHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEE
T ss_pred EEEEcccccch------------hhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEE
Confidence 99876443333 23444555899999999998631 1 1233 3445666678887
Q ss_pred EecCCCCCCCCeEEEEEEec
Q 017068 353 VHDKEPGSNGREKILVATKS 372 (378)
Q Consensus 353 ~~~~~~~~~~~e~~l~~~K~ 372 (378)
+... .+++++++|+
T Consensus 192 llpi------gdGl~l~~K~ 205 (205)
T PF01596_consen 192 LLPI------GDGLTLARKR 205 (205)
T ss_dssp EECS------TTEEEEEEE-
T ss_pred EEEe------CCeeEEEEEC
Confidence 7754 4579999985
No 307
>PRK04148 hypothetical protein; Provisional
Probab=88.86 E-value=0.2 Score=44.36 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=61.4
Q ss_pred eEEEecCCccee-eeeeccCCCeeEEEeccCCCC-cchHHHHhhccccccccccccC-CCCCCccccccccCccccccCC
Q 017068 226 RNIMDMNAFFGG-FAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPF-STYPRTYDLIHVSGIESLIKNP 302 (378)
Q Consensus 226 R~vlDm~ag~g~-faa~L~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w~~~f-~typrtyDliH~~~~~~~~~~~ 302 (378)
+.++|+|||+|. +|..|.+... .|+..|.. ..++-+-++|+-.+..|+-++= .-| +.+|
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y-~~a~-------------- 79 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIY-KNAK-------------- 79 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHH-hcCC--------------
Confidence 569999999995 9989998887 66777765 6688888888766666554421 100 2223
Q ss_pred CCCCCCCCccceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEEEe
Q 017068 303 GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVH 354 (378)
Q Consensus 303 ~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~~~ 354 (378)
++.+ +|-+.+.+..+.++++++.=++.+.
T Consensus 80 -----------liys------------irpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 80 -----------LIYS------------IRPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred -----------EEEE------------eCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3333 2345778888999999998888764
No 308
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=88.70 E-value=0.92 Score=40.44 Aligned_cols=72 Identities=8% Similarity=-0.035 Sum_probs=47.4
Q ss_pred CeEEEecCCCCChHHHHHHHHHcC---CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhh--cccCCc
Q 017068 5 NILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR--LLRPGG 79 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~R--VLkPGG 79 (378)
.|+++++. +.+++.++++. ..+.+..+|+.++++++..||.|+++- ..|... ..+..+.+ .+.++|
T Consensus 37 ~v~~vE~~-----~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py~~~~---~~i~~~l~~~~~~~~~ 107 (169)
T smart00650 37 RVTAIEID-----PRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL-PYNIST---PILFKLLEEPPAFRDA 107 (169)
T ss_pred eEEEEECC-----HHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC-CcccHH---HHHHHHHhcCCCcceE
Confidence 45566655 57888887763 246678889999999988899998754 344432 33333332 245888
Q ss_pred EEEEEc
Q 017068 80 YLVISG 85 (378)
Q Consensus 80 ~lvis~ 85 (378)
.|++-.
T Consensus 108 ~l~~q~ 113 (169)
T smart00650 108 VLMVQK 113 (169)
T ss_pred EEEEEH
Confidence 888753
No 309
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.45 E-value=0.2 Score=42.95 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=27.2
Q ss_pred ceeEEEecCcc--cc--ccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068 47 SFDIVHCSRCL--IP--FTAYN-ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 47 SFD~V~cs~~l--~h--w~~~~-~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.||+|.|-.+. +| |.|.+ ..+++.+.+.|+|||.|++-..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 38999986543 22 23333 4688999999999999999654
No 310
>PRK11524 putative methyltransferase; Provisional
Probab=88.40 E-value=0.31 Score=47.54 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=35.7
Q ss_pred EEEEcccCCC--CCCCCceeEEEec--Ccc--------ccccCC-----hHHHHHHHhhcccCCcEEEEEcC
Q 017068 32 FVAMLGTRRL--PFPAFSFDIVHCS--RCL--------IPFTAY-----NATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 32 ~~~v~dae~L--Pfpd~SFD~V~cs--~~l--------~hw~~~-----~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.+..+|+... .+++++||+|++. +.. -.|... -...+.|+.|+|||||.+++...
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3455665443 4788999999984 111 011100 12688999999999999998643
No 311
>PHA03412 putative methyltransferase; Provisional
Probab=88.28 E-value=1.6 Score=42.33 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccc--cC---------ChHHHHHHHhhcccCCcEEEE
Q 017068 15 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF--TA---------YNATYLIEVDRLLRPGGYLVI 83 (378)
Q Consensus 15 D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw--~~---------~~~~~L~Ev~RVLkPGG~lvi 83 (378)
|+++.+++.|++....+.+..+|....++ +++||+|+|+==+... .+ ....++..+.|+|+||+. ++
T Consensus 83 EID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 83 ELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 44568999999876567788888876665 5799999987322211 11 012577888897777775 44
No 312
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.79 E-value=0.39 Score=44.28 Aligned_cols=44 Identities=27% Similarity=0.572 Sum_probs=36.1
Q ss_pred CCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 42 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 42 Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
--.-..||.|.|+.|+. +.+.....++-+.+.|||.|..++..|
T Consensus 98 q~eq~tFDiIlaADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 98 QQEQHTFDIILAADCLF-FDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred HHhhCcccEEEeccchh-HHHHHHHHHHHHHHHhCcccceeEecC
Confidence 34567999999999984 455445888999999999999888887
No 313
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=87.45 E-value=0.41 Score=45.81 Aligned_cols=119 Identities=14% Similarity=0.188 Sum_probs=71.0
Q ss_pred eEEEecCCcceeeeeeccCC--CeeEEEeccCCCC--cchHHHHhhcc--ccccc-cccccCCCCC--CccccccccCcc
Q 017068 226 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS--STLSVIYDRGL--IGVYH-DWCEPFSTYP--RTYDLIHVSGIE 296 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~--~vwvmnv~p~~~~--~~l~~i~eRGl--ig~~~-~w~~~f~typ--rtyDliH~~~~~ 296 (378)
..+|++|||.|.|-+.++.+ ..-.+-|-..... .-+.-|-+.|| +-++. |=.+-+..++ .|.|-|+-. |
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--F 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE--C
Confidence 58999999999999999743 3433344444332 45577888888 44442 2222222233 388877752 4
Q ss_pred c-cccCCCCCCCCCCccceeeeecccccCCCeEEEe-CCHHHHHH-HHHHHhc
Q 017068 297 S-LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDK-VSRIANT 346 (378)
Q Consensus 297 ~-~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~-d~~~~~~~-~~~~~~~ 346 (378)
. .|.---..+.|=-=...|-++-|+|+|||.+.+. |..++.+. +.+....
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 3 4431111122222247888999999999999886 55555555 5554433
No 314
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=87.37 E-value=0.4 Score=44.38 Aligned_cols=135 Identities=17% Similarity=0.288 Sum_probs=78.5
Q ss_pred ccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeee---eccCCCeeEEEeccCCCC----cch-HHHHhhcc-
Q 017068 199 EADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAA---ALTSDPVWVMNVVPARKS----STL-SVIYDRGL- 269 (378)
Q Consensus 199 ~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa---~L~~~~vwvmnv~p~~~~----~~l-~~i~eRGl- 269 (378)
....+.|.+.+-+=+. +.+.+..... +++|+|+|-| |=+ |+..... +|+-.|+. +=| .++-+=||
T Consensus 25 ~~~~~~~~~Hi~DSL~-~~~~~~~~~~-~~lDiGSGaG-fPGipLaI~~p~~---~~~LvEs~~KK~~FL~~~~~~L~L~ 98 (184)
T PF02527_consen 25 RDPEEIWERHILDSLA-LLPFLPDFGK-KVLDIGSGAG-FPGIPLAIARPDL---QVTLVESVGKKVAFLKEVVRELGLS 98 (184)
T ss_dssp -SHHHHHHHHHHHHHG-GGGCS-CCCS-EEEEETSTTT-TTHHHHHHH-TTS---EEEEEESSHHHHHHHHHHHHHHT-S
T ss_pred CCHHHHHHHHHHHHHH-hhhhhccCCc-eEEecCCCCC-ChhHHHHHhCCCC---cEEEEeCCchHHHHHHHHHHHhCCC
Confidence 3345777766644333 2233444333 5999999966 422 2223333 22333332 222 55666677
Q ss_pred -ccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC---HHHHHHHHHHHh
Q 017068 270 -IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS---PEVIDKVSRIAN 345 (378)
Q Consensus 270 -ig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~---~~~~~~~~~~~~ 345 (378)
+-++|...|. +.++..||++-| +-++ .+..++--+-+.|+|||.++.--. .+.+++.++-.+
T Consensus 99 nv~v~~~R~E~-~~~~~~fd~v~a-RAv~------------~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~ 164 (184)
T PF02527_consen 99 NVEVINGRAEE-PEYRESFDVVTA-RAVA------------PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWK 164 (184)
T ss_dssp SEEEEES-HHH-TTTTT-EEEEEE-ESSS------------SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHH
T ss_pred CEEEEEeeecc-cccCCCccEEEe-ehhc------------CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHH
Confidence 4578888887 667899999876 3443 334566667789999999988743 445666666677
Q ss_pred cCCceEEE
Q 017068 346 TVRWTAAV 353 (378)
Q Consensus 346 ~l~W~~~~ 353 (378)
.+.++...
T Consensus 165 ~~~~~~~~ 172 (184)
T PF02527_consen 165 KLGLKVLS 172 (184)
T ss_dssp CCCEEEEE
T ss_pred HhCCEEee
Confidence 77777654
No 315
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=87.18 E-value=0.78 Score=48.44 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=46.5
Q ss_pred CChHHHHHHHHH----cCCC-eEEEEcccCCCC-CCCCceeEEE----ecCc---------cccccCC--------hHHH
Q 017068 15 DSHKAQIQFALE----RGIP-AFVAMLGTRRLP-FPAFSFDIVH----CSRC---------LIPFTAY--------NATY 67 (378)
Q Consensus 15 D~se~~vq~A~e----rg~~-~~~~v~dae~LP-fpd~SFD~V~----cs~~---------l~hw~~~--------~~~~ 67 (378)
|+++..++..++ -|+. +.+...|+..++ ...+.||.|+ ||-. ...|... ....
T Consensus 145 D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~i 224 (470)
T PRK11933 145 EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQREL 224 (470)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHH
Confidence 333444444433 3665 345556776653 3346799998 6622 1223211 1368
Q ss_pred HHHHhhcccCCcEEEEEcCCCCCC
Q 017068 68 LIEVDRLLRPGGYLVISGPPVQWP 91 (378)
Q Consensus 68 L~Ev~RVLkPGG~lvis~pp~~~~ 91 (378)
|..+.+.|||||+++.|+=.++..
T Consensus 225 L~~A~~~LkpGG~LVYSTCT~~~e 248 (470)
T PRK11933 225 IESAFHALKPGGTLVYSTCTLNRE 248 (470)
T ss_pred HHHHHHHcCCCcEEEEECCCCCHH
Confidence 889999999999999987644433
No 316
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=86.28 E-value=0.67 Score=51.13 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=46.7
Q ss_pred eEEEecCCCCChHHHHHHHHHc----CCC---eEEEEcccCC-CCCCCCceeEEEecCc-cc------c---ccCChHHH
Q 017068 6 ILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRR-LPFPAFSFDIVHCSRC-LI------P---FTAYNATY 67 (378)
Q Consensus 6 v~~ms~ap~D~se~~vq~A~er----g~~---~~~~v~dae~-LPfpd~SFD~V~cs~~-l~------h---w~~~~~~~ 67 (378)
|++++++ +.+++.|+++ |+. +.+..+|+.+ +.-..++||+|++.-= +. . ....-...
T Consensus 564 V~~vD~s-----~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l 638 (702)
T PRK11783 564 TTTVDMS-----NTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVAL 638 (702)
T ss_pred EEEEeCC-----HHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHH
Confidence 5555555 6777777764 443 5677777633 2111578999998410 00 0 00111257
Q ss_pred HHHHhhcccCCcEEEEEcC
Q 017068 68 LIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 68 L~Ev~RVLkPGG~lvis~p 86 (378)
+..+.++|+|||.++++..
T Consensus 639 ~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 639 IKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred HHHHHHHcCCCCEEEEEeC
Confidence 7888999999999998764
No 317
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=86.17 E-value=1.4 Score=43.54 Aligned_cols=128 Identities=13% Similarity=0.152 Sum_probs=70.4
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc--ccc-cccccccCCCCCCccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--IGV-YHDWCEPFSTYPRTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~-~~~w~~~f~typrtyDliH~~~~~~ 297 (378)
..|||+|||+|.|+..|..+.- .|+..|.. ..+..+-+ .|+ +-. ..|-.+-.......||+|.++-
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP--- 248 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP--- 248 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC---
Confidence 6799999999999999988654 66777765 66654432 343 111 1111111111224689888751
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHHHH-HHHHHHHhcCCceEEE---ecCCCCCCCCeEEEEEEe
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVI-DKVSRIANTVRWTAAV---HDKEPGSNGREKILVATK 371 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~~~-~~~~~~~~~l~W~~~~---~~~~~~~~~~e~~l~~~K 371 (378)
.|..+..-++++=.-++|++.++++-...++ ..++.+ . -|++.. .|-=+.+..=|-+..-++
T Consensus 249 ---------Pr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 249 ---------PRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred ---------CCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 1223333333332336899999999665543 344444 2 466543 344333333466655544
No 318
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=86.05 E-value=2.6 Score=41.06 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=48.6
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC--CeEEEEcccCCCC--CCCCceeEEEecCcccccc---------------
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFT--------------- 61 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~--~~~~~v~dae~LP--fpd~SFD~V~cs~~l~hw~--------------- 61 (378)
.|.++.+. +.++++|.+. ++ .+.+..+|..... ++-.+||+|+|+==...-.
T Consensus 70 ~I~~VEiq-----~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e 144 (248)
T COG4123 70 KIVGVEIQ-----EEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHE 144 (248)
T ss_pred cEEEEEeC-----HHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhh
Confidence 35555555 6788888775 12 2456667765553 4455899999973211110
Q ss_pred --CChHHHHHHHhhcccCCcEEEEEcC
Q 017068 62 --AYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 62 --~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
-.-...++-..++|||||++.+..+
T Consensus 145 ~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 145 ITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred hcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 0112667778899999999998776
No 319
>PLN02823 spermine synthase
Probab=85.98 E-value=4.5 Score=40.91 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=47.9
Q ss_pred CeEEEecCCCCChHHHHHHHHHcC---------CCeEEEEcccCC-CCCCCCceeEEEecCccccccC--C----hHHHH
Q 017068 5 NILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTA--Y----NATYL 68 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg---------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~--~----~~~~L 68 (378)
.|+++.+. +.+++.|++.- ..+.+.++|+.+ |.-.+++||+|++-. .-++.. . ...++
T Consensus 129 ~v~~VEiD-----~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~-~dp~~~~~~~~Lyt~eF~ 202 (336)
T PLN02823 129 KVVMCDID-----QEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL-ADPVEGGPCYQLYTKSFY 202 (336)
T ss_pred eEEEEECC-----HHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC-CCccccCcchhhccHHHH
Confidence 34555555 58999998752 234566666533 344568899999752 222211 0 12567
Q ss_pred H-HHhhcccCCcEEEEEc
Q 017068 69 I-EVDRLLRPGGYLVISG 85 (378)
Q Consensus 69 ~-Ev~RVLkPGG~lvis~ 85 (378)
+ .+.+.|+|||.+++..
T Consensus 203 ~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 203 ERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred HHHHHHhcCCCcEEEEec
Confidence 6 8999999999998754
No 320
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=85.35 E-value=1 Score=45.62 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=34.6
Q ss_pred eEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEEcC
Q 017068 49 DIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 49 D~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis~p 86 (378)
|+|++-++++||.|.+ .+.|+.+..-|+|||.+++...
T Consensus 238 daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 238 DAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 4999999999999977 7999999999999999998654
No 321
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=85.07 E-value=1.1 Score=42.16 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=44.8
Q ss_pred eEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068 6 ILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY 80 (378)
Q Consensus 6 v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~ 80 (378)
|+++.+. +..++.|+++ +. ++.+..+|...---+...||.|++..+.. ..+ .++.+-||+||+
T Consensus 100 Vv~vE~~-----~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~---~ip----~~l~~qL~~gGr 167 (209)
T PF01135_consen 100 VVSVERD-----PELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVP---EIP----EALLEQLKPGGR 167 (209)
T ss_dssp EEEEESB-----HHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSBBS---S------HHHHHTEEEEEE
T ss_pred EEEECcc-----HHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeeccc---hHH----HHHHHhcCCCcE
Confidence 5566555 5777777765 44 46778888644322456899999987653 222 567778999999
Q ss_pred EEEEcC
Q 017068 81 LVISGP 86 (378)
Q Consensus 81 lvis~p 86 (378)
+++-..
T Consensus 168 LV~pi~ 173 (209)
T PF01135_consen 168 LVAPIG 173 (209)
T ss_dssp EEEEES
T ss_pred EEEEEc
Confidence 998543
No 322
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=84.93 E-value=2.4 Score=43.12 Aligned_cols=109 Identities=10% Similarity=0.147 Sum_probs=59.3
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--ccc-cccccccCCCCCCccccccccCccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--IGV-YHDWCEPFSTYPRTYDLIHVSGIES 297 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~-~~~w~~~f~typrtyDliH~~~~~~ 297 (378)
++|||++||+|.|+..|..+.- .|+-+|.. ..+..+-+. |+ +-. -.|..+..+..-..||+|-.+--
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP-- 309 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP-- 309 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC--
Confidence 5899999999999999987654 45666644 455433332 22 101 11111111111134788777421
Q ss_pred cccCCCCCCCCCCc-cceeeeecccccCCCeEEEeCCHHHHH-HHHHHHhcCCceEEE
Q 017068 298 LIKNPGSNKNSCSL-VDLMVEMDRMLRPEGTVVVRDSPEVID-KVSRIANTVRWTAAV 353 (378)
Q Consensus 298 ~~~~~~~~~~~c~~-~~~l~EmDRiLRPgG~~ii~d~~~~~~-~~~~~~~~l~W~~~~ 353 (378)
|..+ ..++-.+. -++|++.++++-...++. .+..+ . -|++..
T Consensus 310 ----------r~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L-~--gy~l~~ 353 (374)
T TIGR02085 310 ----------RRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL-S--GYQIER 353 (374)
T ss_pred ----------CCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh-c--CceEEE
Confidence 2222 22222222 279999999997766544 45555 2 477653
No 323
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=84.83 E-value=2.6 Score=40.47 Aligned_cols=73 Identities=19% Similarity=0.098 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHcC--CCeEEEEcccCC-CCC-CCCceeEEEecCccc--------------ccc-------CC----h
Q 017068 14 RDSHKAQIQFALERG--IPAFVAMLGTRR-LPF-PAFSFDIVHCSRCLI--------------PFT-------AY----N 64 (378)
Q Consensus 14 ~D~se~~vq~A~erg--~~~~~~v~dae~-LPf-pd~SFD~V~cs~~l~--------------hw~-------~~----~ 64 (378)
.|.|+.+++.|+++- ....+..+|..+ ++- ..+.||+|+++-=.+ |.+ .+ -
T Consensus 116 vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~ 195 (251)
T TIGR03704 116 ADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVL 195 (251)
T ss_pred EECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHH
Confidence 345567888877651 113566666543 221 135799999863111 110 00 0
Q ss_pred HHHHHHHhhcccCCcEEEEEcC
Q 017068 65 ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 65 ~~~L~Ev~RVLkPGG~lvis~p 86 (378)
...+..+.++|||||.+++...
T Consensus 196 ~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 196 RRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred HHHHHHHHHhcCCCCEEEEEEC
Confidence 2566777899999999998754
No 324
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.62 E-value=1.8 Score=41.80 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=48.7
Q ss_pred CeEEEecCCCCChHHHHHHHHHcCCC--eEEEEccc-CCC-----CCCCCceeEEEecCccccccCChHHHHHHHhhccc
Q 017068 5 NILTLSFAPRDSHKAQIQFALERGIP--AFVAMLGT-RRL-----PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR 76 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg~~--~~~~v~da-e~L-----Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLk 76 (378)
.|+|+++-+...--. .++-+..|+. +.+.++.+ +.| -.+.++||+|+. =||.+.-.....+..|.||
T Consensus 100 rv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr 174 (237)
T KOG1663|consen 100 RVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLR 174 (237)
T ss_pred eEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcc
Confidence 467777765332222 3444444543 45555543 222 257899999984 4666654578899999999
Q ss_pred CCcEEEEE
Q 017068 77 PGGYLVIS 84 (378)
Q Consensus 77 PGG~lvis 84 (378)
+||.+++-
T Consensus 175 ~GGvi~~D 182 (237)
T KOG1663|consen 175 VGGVIVVD 182 (237)
T ss_pred cccEEEEe
Confidence 99999974
No 325
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=84.18 E-value=4.5 Score=40.48 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=52.8
Q ss_pred cCCCCChHHHHHH----HHHcCCC--eEEEEcccCC---CCCCCCceeEEEecCccccccCCh--HHHHHHHhhcccCCc
Q 017068 11 FAPRDSHKAQIQF----ALERGIP--AFVAMLGTRR---LPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGG 79 (378)
Q Consensus 11 ~ap~D~se~~vq~----A~erg~~--~~~~v~dae~---LPfpd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG 79 (378)
+--+|.|+..|+. ++++|+. +.|..+|+-. +.=-+-..++++.+-.+.-++|.. ...+.-+.+.|.|||
T Consensus 164 i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG 243 (311)
T PF12147_consen 164 ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGG 243 (311)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCc
Confidence 3345666666655 4456776 3677777532 221244458888887777777755 467899999999999
Q ss_pred EEEEEcCC
Q 017068 80 YLVISGPP 87 (378)
Q Consensus 80 ~lvis~pp 87 (378)
+++.++.|
T Consensus 244 ~lIyTgQP 251 (311)
T PF12147_consen 244 YLIYTGQP 251 (311)
T ss_pred EEEEcCCC
Confidence 99999864
No 326
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=83.97 E-value=0.36 Score=45.12 Aligned_cols=120 Identities=10% Similarity=0.034 Sum_probs=60.0
Q ss_pred cccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeee-ccCCCeeEEEeccCCCC-cchHHHHh----hcc--
Q 017068 198 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAA-LTSDPVWVMNVVPARKS-STLSVIYD----RGL-- 269 (378)
Q Consensus 198 F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~-L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-- 269 (378)
+...+..-++.+-++.... ..+ ..|||++||+|.||.. |..... .|+-.+.. ..+..+.+ -|+
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~----~~~--~~vLDl~~GsG~l~l~~lsr~a~---~V~~vE~~~~a~~~a~~Nl~~~~~~~ 103 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPV----IVD--ARCLDCFAGSGALGLEALSRYAA---GATLLEMDRAVAQQLIKNLATLKAGN 103 (199)
T ss_pred cCcCCHHHHHHHHHHHhhh----cCC--CEEEEcCCCccHHHHHHHHcCCC---EEEEEECCHHHHHHHHHHHHHhCCCc
Confidence 4556666666665544311 122 3699999999999975 444334 33444433 22222211 122
Q ss_pred cc-ccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH
Q 017068 270 IG-VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 334 (378)
Q Consensus 270 ig-~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~ 334 (378)
+- +..|..+.++.....||+|-++--|-. +-...+-..|.+ -.+|.|+|.+++.-..
T Consensus 104 v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~-------g~~~~~l~~l~~-~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 104 ARVVNTNALSFLAQPGTPHNVVFVDPPFRK-------GLLEETINLLED-NGWLADEALIYVESEV 161 (199)
T ss_pred EEEEEchHHHHHhhcCCCceEEEECCCCCC-------ChHHHHHHHHHH-CCCcCCCcEEEEEecC
Confidence 11 122333323222346999988644310 000111122222 3568999999998543
No 327
>PLN02672 methionine S-methyltransferase
Probab=83.39 E-value=1 Score=52.10 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=69.4
Q ss_pred eEEEecCCcceeeeeeccCC-CeeEEEeccCCCC-cchHHHHh---h----------------cc---cc-ccccccccC
Q 017068 226 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD---R----------------GL---IG-VYHDWCEPF 280 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~~-~~l~~i~e---R----------------Gl---ig-~~~~w~~~f 280 (378)
..|+|+|||+|-.+-+|..+ +-. .|+..|-+ ..+.++.+ + ++ +- +..||.+.+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~--~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPS--KVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 36999999999999988653 311 45666654 55554421 1 11 11 344676655
Q ss_pred CCCCCccccccccCccccccC-----CCCC-----------CCCCCc-------------cceeeeecccccCCCeEEEe
Q 017068 281 STYPRTYDLIHVSGIESLIKN-----PGSN-----------KNSCSL-------------VDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 281 ~typrtyDliH~~~~~~~~~~-----~~~~-----------~~~c~~-------------~~~l~EmDRiLRPgG~~ii~ 331 (378)
......||+|.+.--.....+ +... +..|-+ ..++-|.-++|+|||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 321125999988643221110 0000 012322 35777888999999999987
Q ss_pred CCHHHHHHHH-HHHhcCCceE
Q 017068 332 DSPEVIDKVS-RIANTVRWTA 351 (378)
Q Consensus 332 d~~~~~~~~~-~~~~~l~W~~ 351 (378)
=..+.-+.+. ++.++.-|+.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCe
Confidence 4444444555 4555444443
No 328
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=83.17 E-value=0.59 Score=45.34 Aligned_cols=39 Identities=10% Similarity=0.284 Sum_probs=30.4
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR 267 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR 267 (378)
.+|||+|||+|.++.+|.++.- .|+..|.. .+++.+-++
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHh
Confidence 5799999999999999988754 56667755 677766554
No 329
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=81.92 E-value=3.2 Score=42.86 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=45.5
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC---CeEEEEcccCCCC--C--CCCceeEEEecCccccccCCh---------
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRRLP--F--PAFSFDIVHCSRCLIPFTAYN--------- 64 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~---~~~~~v~dae~LP--f--pd~SFD~V~cs~~l~hw~~~~--------- 64 (378)
.|++++++ +.+++.|+++ |+ .+.+..+|+...- + ..++||+|++.-= .+....
T Consensus 245 ~V~~VD~s-----~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP--~f~~~k~~l~~~~~~ 317 (396)
T PRK15128 245 QVVSVDTS-----QEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPP--KFVENKSQLMGACRG 317 (396)
T ss_pred EEEEEECC-----HHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCC--CCCCChHHHHHHHHH
Confidence 35666555 5777777664 44 3567777764421 2 3568999998621 111111
Q ss_pred -HHHHHHHhhcccCCcEEEEEcC
Q 017068 65 -ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 65 -~~~L~Ev~RVLkPGG~lvis~p 86 (378)
...+....++|+|||.++.++-
T Consensus 318 y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 318 YKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeC
Confidence 1334457899999999997543
No 330
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=81.82 E-value=0.26 Score=45.98 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=65.9
Q ss_pred ccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcce----eeeeeccC----CCeeEEEeccCCCC-cchHHHHhh
Q 017068 197 VFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFG----GFAAALTS----DPVWVMNVVPARKS-STLSVIYDR 267 (378)
Q Consensus 197 ~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g----~faa~L~~----~~vwvmnv~p~~~~-~~l~~i~eR 267 (378)
.|-.|..+|..-.+.....+......++-=.|...||++| |.|..|.+ ..-|-+.|..+|-+ ..|+. +.+
T Consensus 4 ~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~-Ar~ 82 (196)
T PF01739_consen 4 YFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEK-ARA 82 (196)
T ss_dssp -TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHH-HHH
T ss_pred cccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHH-HHh
Confidence 4666777777666555521211122234455788888888 55555544 22345677777765 44432 233
Q ss_pred cc----------cc--------------------------ccccccccCCCCCCccccccccCccccccCCCCCCCCCCc
Q 017068 268 GL----------IG--------------------------VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSL 311 (378)
Q Consensus 268 Gl----------ig--------------------------~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~ 311 (378)
|. .+ ..||-.+ .++.+.-||+|-|-.++.++. .-.-
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-------~~~~ 154 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-------PETQ 154 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--------HHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-------HHHH
Confidence 33 00 1233333 234457999999999999885 1122
Q ss_pred cceeeeecccccCCCeEEEeCCH
Q 017068 312 VDLMVEMDRMLRPEGTVVVRDSP 334 (378)
Q Consensus 312 ~~~l~EmDRiLRPgG~~ii~d~~ 334 (378)
..++--+-+.|+||||+++-...
T Consensus 155 ~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 155 QRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HHHHHHHGGGEEEEEEEEE-TT-
T ss_pred HHHHHHHHHHcCCCCEEEEecCc
Confidence 46777889999999999997654
No 331
>PRK00536 speE spermidine synthase; Provisional
Probab=80.99 E-value=4.5 Score=39.60 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHcC---------CCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068 15 DSHKAQIQFALERG---------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 15 D~se~~vq~A~erg---------~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
|+.+..|+.|++-- ..+.+.. ... .-..++||+|++-.. .+. ...+.+.|.|+|||.++.-.
T Consensus 101 eID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVIIvDs~-----~~~-~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 101 QADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLIICLQE-----PDI-HKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred ECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEEEEcCC-----CCh-HHHHHHHHhcCCCcEEEECC
Confidence 45578999998831 1222222 111 112478999997532 233 77899999999999999854
Q ss_pred C
Q 017068 86 P 86 (378)
Q Consensus 86 p 86 (378)
.
T Consensus 172 ~ 172 (262)
T PRK00536 172 K 172 (262)
T ss_pred C
Confidence 3
No 332
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=80.78 E-value=0.38 Score=46.71 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=66.0
Q ss_pred CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHH---HhhccccccccccccCCCCC-CccccccccCcccc
Q 017068 224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI---YDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESL 298 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i---~eRGlig~~~~w~~~f~typ-rtyDliH~~~~~~~ 298 (378)
..-+++|+||+.|-.+-.|+..+| =-+.-.|.+ .+++-. -|-+++-.|-.--|.|..|- +++|||-.+-.+ +
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-H 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-H 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-h
Confidence 578999999999999999998875 122334444 454433 34566666666666655555 899999876433 3
Q ss_pred ccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 299 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 299 ~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
|. -.+..-|+-..-+|+|.|.||-+
T Consensus 149 W~--------NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 149 WT--------NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hh--------ccCchHHHHHHHhcCCCccchhH
Confidence 44 12344567778899999999876
No 333
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=80.75 E-value=0.92 Score=42.76 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=49.0
Q ss_pred HHHHhhhhcCCCCeeEEEecCCcceeeeeecc---CCCeeEEEeccCCCC-cchHHHHhh-cc--cc-ccccccccCCCC
Q 017068 212 YKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKS-STLSVIYDR-GL--IG-VYHDWCEPFSTY 283 (378)
Q Consensus 212 Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~---~~~vwvmnv~p~~~~-~~l~~i~eR-Gl--ig-~~~~w~~~f~ty 283 (378)
..+.|. ++.|. .|||+|||+|=++|.|. .+.--|.+|-....- ..-+-.+++ |+ +. +..|=.+.++..
T Consensus 64 ~l~~L~--l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 64 MLEALD--LKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHTT--C-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHh--cCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 344444 66664 79999999998888775 222223444332211 111222222 33 11 233433322221
Q ss_pred CCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 284 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 284 prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
-.||.||++..... +--++=.-|+|||.+|+-
T Consensus 140 -apfD~I~v~~a~~~---------------ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 140 -APFDRIIVTAAVPE---------------IPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp --SEEEEEESSBBSS-----------------HHHHHTEEEEEEEEEE
T ss_pred -CCcCEEEEeeccch---------------HHHHHHHhcCCCcEEEEE
Confidence 36999999644432 222233458999999873
No 334
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.62 E-value=0.23 Score=45.37 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=36.4
Q ss_pred cccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 275 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 275 ~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
+|-.+|- |+|.|+|-|.+++-++. - -+.-..+-|-.|+|||||++=+.
T Consensus 38 s~e~~F~--dns~d~iyaeHvlEHlt------~-~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 38 SNESMFE--DNSVDAIYAEHVLEHLT------Y-DEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hhhccCC--CcchHHHHHHHHHHHHh------H-HHHHHHHHHHHHHhCcCcEEEEE
Confidence 3445554 59999999999987765 1 12246788999999999999886
No 335
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.53 E-value=6.5 Score=37.37 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=46.7
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCCCCC-CceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 78 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LPfpd-~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG 78 (378)
.|+++... +...++|+++ |. ++.+.++|. ..-++. .-||.|++.-+.-.. + .-+.+-||||
T Consensus 96 ~V~siEr~-----~~L~~~A~~~L~~lg~~nV~v~~gDG-~~G~~~~aPyD~I~Vtaaa~~v---P----~~Ll~QL~~g 162 (209)
T COG2518 96 RVVSIERI-----EELAEQARRNLETLGYENVTVRHGDG-SKGWPEEAPYDRIIVTAAAPEV---P----EALLDQLKPG 162 (209)
T ss_pred eEEEEEEc-----HHHHHHHHHHHHHcCCCceEEEECCc-ccCCCCCCCcCEEEEeeccCCC---C----HHHHHhcccC
Confidence 56666665 5778888775 55 466777775 345655 789999987765333 2 3456679999
Q ss_pred cEEEEEc
Q 017068 79 GYLVISG 85 (378)
Q Consensus 79 G~lvis~ 85 (378)
|++++-.
T Consensus 163 Grlv~Pv 169 (209)
T COG2518 163 GRLVIPV 169 (209)
T ss_pred CEEEEEE
Confidence 9999843
No 336
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.09 E-value=0.39 Score=44.29 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=70.3
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC----cchHHHHhhccccc--------cccccccCCCCCCcccccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS----STLSVIYDRGLIGV--------YHDWCEPFSTYPRTYDLIHVS 293 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~----~~l~~i~eRGlig~--------~~~w~~~f~typrtyDliH~~ 293 (378)
|-|+.+|+|+-|+|.-|+...+-+-+|--+|+. ..++-|.-+.-... .|.|.-.-.---.|||.|-|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 678999999999999887443322233334432 34444444442111 222222212222699999999
Q ss_pred Cc--cccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH--HHHHHHHHHHhcCCceE
Q 017068 294 GI--ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--EVIDKVSRIANTVRWTA 351 (378)
Q Consensus 294 ~~--~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~--~~~~~~~~~~~~l~W~~ 351 (378)
.| |+.++ +.++=-|.+.|||.|..++..+. +.+++..+.++..-..+
T Consensus 111 DClFfdE~h-----------~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v 161 (201)
T KOG3201|consen 111 DCLFFDEHH-----------ESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTV 161 (201)
T ss_pred cchhHHHHH-----------HHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEE
Confidence 98 56665 67888899999999999998753 35555555444443333
No 337
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=78.71 E-value=2 Score=39.97 Aligned_cols=68 Identities=18% Similarity=0.001 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHcCCCeEEEEcccCCCC-----CCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEE
Q 017068 16 SHKAQIQFALERGIPAFVAMLGTRRLP-----FPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVI 83 (378)
Q Consensus 16 ~se~~vq~A~erg~~~~~~v~dae~LP-----fpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvi 83 (378)
.|..-+..-.++...+.+..+|+..|- +++.-||.|+|..=+..++-+. -..|+++..-|++||.++-
T Consensus 81 ~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 81 YSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred eCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 455666666666555667777876664 7899999999987777776654 4788899999999999985
No 338
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=78.59 E-value=0.63 Score=46.04 Aligned_cols=44 Identities=16% Similarity=0.361 Sum_probs=35.2
Q ss_pred CCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH
Q 017068 284 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 334 (378)
Q Consensus 284 prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~ 334 (378)
+..||+|.|-.+|.+.. .-.-..++-.+-+.|+|||++++-...
T Consensus 221 ~~~fD~I~cRNvliyF~-------~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFD-------KTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcCC-------HHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 37899999999998874 112257999999999999999887543
No 339
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=78.54 E-value=0.88 Score=46.17 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=57.1
Q ss_pred eEEEecCCcceeeeeeccC-CCeeEEEeccCCCC-cchHHHHhhcc-------ccccccccccCCCCCCccccccccCcc
Q 017068 226 RNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYDRGL-------IGVYHDWCEPFSTYPRTYDLIHVSGIE 296 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~-~~vwvmnv~p~~~~-~~l~~i~eRGl-------ig~~~~w~~~f~typrtyDliH~~~~~ 296 (378)
++|||+|||+|=+...-++ -.+-|+.|-.++.. -..+++.+.|+ .|-..+-- +| .--.|.|-+-|.-
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~--LP--~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE--LP--VEKVDIIVSEWMG 137 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe--cC--ccceeEEeehhhh
Confidence 6799999999965432221 13433444433322 33478888888 24444442 33 3677888876552
Q ss_pred ccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068 297 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 330 (378)
Q Consensus 297 ~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii 330 (378)
..+- -.-.+..+|.-=||-|.|||.++=
T Consensus 138 y~Ll------~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLL------YESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHH------HhhhhhhhhhhhhhccCCCceEcc
Confidence 2111 112345788889999999998764
No 340
>PRK00536 speE spermidine synthase; Provisional
Probab=78.03 E-value=4.2 Score=39.79 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=63.2
Q ss_pred HHHHhh--hhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cc-------hHHHHhhcc----cccccccc
Q 017068 212 YKNTLN--VKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-ST-------LSVIYDRGL----IGVYHDWC 277 (378)
Q Consensus 212 Y~~~~~--~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~-------l~~i~eRGl----ig~~~~w~ 277 (378)
|-+.|. +++..+.-|+||=+|.|-||-+--+++.+- +|+-++-- .- ++.+- .++ +-++- +-
T Consensus 58 YHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~-~~~~DpRv~l~~-~~ 132 (262)
T PRK00536 58 ESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFH-EVKNNKNFTHAK-QL 132 (262)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHH-HhhcCCCEEEee-hh
Confidence 555443 567788999999999999988877888773 44444432 11 22211 122 11111 11
Q ss_pred ccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068 278 EPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 333 (378)
Q Consensus 278 ~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~ 333 (378)
. .....+||+|=.+.+|+. ...-.+.|.|+|||.++.+..
T Consensus 133 ~--~~~~~~fDVIIvDs~~~~--------------~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 133 L--DLDIKKYDLIICLQEPDI--------------HKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred h--hccCCcCCEEEEcCCCCh--------------HHHHHHHHhcCCCcEEEECCC
Confidence 1 122478999999876551 223457999999999999853
No 341
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=77.70 E-value=1.3 Score=42.67 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=28.2
Q ss_pred eeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh
Q 017068 225 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD 266 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e 266 (378)
-.+|+|+|||+|.++..|..+.. .|+..+-. ..++.+-+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~ 69 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRD 69 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHH
Confidence 37899999999999999998764 44555544 45554444
No 342
>PLN02476 O-methyltransferase
Probab=77.23 E-value=4.7 Score=39.85 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=44.9
Q ss_pred eEEEecCCCCChHHHHHHHHH----cCCC--eEEEEcccCC-CC-C----CCCceeEEEecCccccccCChHHHHHHHhh
Q 017068 6 ILTLSFAPRDSHKAQIQFALE----RGIP--AFVAMLGTRR-LP-F----PAFSFDIVHCSRCLIPFTAYNATYLIEVDR 73 (378)
Q Consensus 6 v~~ms~ap~D~se~~vq~A~e----rg~~--~~~~v~dae~-LP-f----pd~SFD~V~cs~~l~hw~~~~~~~L~Ev~R 73 (378)
|+|++..| ..++.|++ .|+. +.+..+++.. |+ + .+++||+|+.-. ....-..++..+.+
T Consensus 146 V~TiE~d~-----e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa----~K~~Y~~y~e~~l~ 216 (278)
T PLN02476 146 LVACERDS-----NSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDA----DKRMYQDYFELLLQ 216 (278)
T ss_pred EEEEECCH-----HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECC----CHHHHHHHHHHHHH
Confidence 67777765 44455544 3553 5667777532 33 2 246899998642 22222478899999
Q ss_pred cccCCcEEEEE
Q 017068 74 LLRPGGYLVIS 84 (378)
Q Consensus 74 VLkPGG~lvis 84 (378)
.|||||.+++-
T Consensus 217 lL~~GGvIV~D 227 (278)
T PLN02476 217 LVRVGGVIVMD 227 (278)
T ss_pred hcCCCcEEEEe
Confidence 99999999874
No 343
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=76.87 E-value=0.99 Score=47.66 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=58.2
Q ss_pred CCCCeeEEEecCCcceeeeeecc----CCCeeEEEeccCCCC----cchHHHHhh-cccc--cc-ccccccCCCCCCccc
Q 017068 221 GTPAIRNIMDMNAFFGGFAAALT----SDPVWVMNVVPARKS----STLSVIYDR-GLIG--VY-HDWCEPFSTYPRTYD 288 (378)
Q Consensus 221 ~~~~iR~vlDm~ag~g~faa~L~----~~~vwvmnv~p~~~~----~~l~~i~eR-Glig--~~-~~w~~~f~typrtyD 288 (378)
..|. .||||.|+-||=+.+|. ++.. |+..|.+ ..|+-.++| |+-- +. .|=+..-..+|..||
T Consensus 112 ~pg~--~VLD~CAAPGgKTt~la~~l~~~g~----lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 112 NAPQ--RVLDMAAAPGSKTTQIAALMNNQGA----IVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCC--EEEEeCCCccHHHHHHHHHcCCCCE----EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcC
Confidence 4453 69999999999776654 3333 3444433 444555566 4411 11 111111124467899
Q ss_pred ccc----ccCccccccCCCCCCCCCC---c-------cceeeeecccccCCCeEEEe
Q 017068 289 LIH----VSGIESLIKNPGSNKNSCS---L-------VDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 289 liH----~~~~~~~~~~~~~~~~~c~---~-------~~~l~EmDRiLRPgG~~ii~ 331 (378)
.|- ||+.-..-++|+.-. +-. + ..||-..=+.|||||++|.+
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~-~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALK-NWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhh-hCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 998 665533322222110 000 0 26777778999999999998
No 344
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=76.36 E-value=15 Score=32.88 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHc----CC--CeEEEEcccCCCC-C-CCCceeEEEecCccccccCCh--------HHHHHHHhhcccCC
Q 017068 15 DSHKAQIQFALER----GI--PAFVAMLGTRRLP-F-PAFSFDIVHCSRCLIPFTAYN--------ATYLIEVDRLLRPG 78 (378)
Q Consensus 15 D~se~~vq~A~er----g~--~~~~~v~dae~LP-f-pd~SFD~V~cs~~l~hw~~~~--------~~~L~Ev~RVLkPG 78 (378)
|+-++.++.+++| +. .+.+...+=+++. + +.+.+|+|+.+....+=.|+. -.+++.+.++|+||
T Consensus 6 DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~g 85 (140)
T PF06962_consen 6 DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPG 85 (140)
T ss_dssp ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEE
T ss_pred ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccC
Confidence 4447888888776 32 2555554444554 3 335999999877654432221 27999999999999
Q ss_pred cEEEEEcCCCCCCccchH---HHHHHHHHHHh
Q 017068 79 GYLVISGPPVQWPKQDKE---WADLQAVARAL 107 (378)
Q Consensus 79 G~lvis~pp~~~~~~~~~---w~~l~~l~~~l 107 (378)
|.+++..- ++++.+ .+.+...+..+
T Consensus 86 G~i~iv~Y----~GH~gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 86 GIITIVVY----PGHPGGKEESEAVEEFLASL 113 (140)
T ss_dssp EEEEEEE------STCHHHHHHHHHHHHHHTS
T ss_pred CEEEEEEe----CCCCCCHHHHHHHHHHHHhC
Confidence 99998764 333433 33455555543
No 345
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=75.67 E-value=1.4 Score=44.93 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=39.7
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHHHhhcccccccccccc-CCCCCCccccccccCc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEP-FSTYPRTYDLIHVSGI 295 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~-f~typrtyDliH~~~~ 295 (378)
.+++|+||..|||.-.|+++.. .|+.+|....-+-+.+-+-+-.+-.=--. .|. ++.+|++.|+-+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~-~~~vDwvVcDmv 279 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPP-RKNVDWLVCDMV 279 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCC---EEEEEechhcCHhhhCCCCEEEEeccCcccCCC-CCCCCEEEEecc
Confidence 4799999999999999999986 55666633222333444332111100001 122 567899999743
No 346
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=75.16 E-value=2.3 Score=43.95 Aligned_cols=77 Identities=21% Similarity=0.190 Sum_probs=48.5
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC---eEEEEcccC-CCCCC---CCceeEEEecC--------ccccccCChH
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTR-RLPFP---AFSFDIVHCSR--------CLIPFTAYNA 65 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~---~~~~v~dae-~LPfp---d~SFD~V~cs~--------~l~hw~~~~~ 65 (378)
.|+++|++ ...++.|+++ |+. +.+.++|+- -|... ...||+|+.-= .......+-.
T Consensus 242 ~vt~VD~S-----~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~ 316 (393)
T COG1092 242 EVTSVDLS-----KRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYK 316 (393)
T ss_pred ceEEEecc-----HHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHH
Confidence 45666555 6778888775 443 567788752 23322 34999998521 0100011113
Q ss_pred HHHHHHhhcccCCcEEEEEcC
Q 017068 66 TYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 66 ~~L~Ev~RVLkPGG~lvis~p 86 (378)
..+.+..++|+|||.+++++-
T Consensus 317 ~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 317 DLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred HHHHHHHHHcCCCCEEEEEec
Confidence 788899999999999999875
No 347
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=74.35 E-value=1.8 Score=37.68 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhhcCC----CCeeEEEecCCcceeeeeeccC
Q 017068 207 RRVAYYKNTLNVKLGT----PAIRNIMDMNAFFGGFAAALTS 244 (378)
Q Consensus 207 ~~v~~Y~~~~~~~~~~----~~iR~vlDm~ag~g~faa~L~~ 244 (378)
+.|+.+.+.+...+.. .....|+|+|||-|=++-+|..
T Consensus 4 ~Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 4 HEIERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHH
Confidence 3455566555554444 6799999999999988887766
No 348
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=74.30 E-value=7.7 Score=39.39 Aligned_cols=84 Identities=27% Similarity=0.364 Sum_probs=46.7
Q ss_pred EEEecCCCCChHHHHHHHHHcCCCe-EEEEcccCCCC--CCCC-ceeEEE----ec-Cccc--------cccCC------
Q 017068 7 LTLSFAPRDSHKAQIQFALERGIPA-FVAMLGTRRLP--FPAF-SFDIVH----CS-RCLI--------PFTAY------ 63 (378)
Q Consensus 7 ~~ms~ap~D~se~~vq~A~erg~~~-~~~v~dae~LP--fpd~-SFD~V~----cs-~~l~--------hw~~~------ 63 (378)
+|.++.+. --..+.+.+++-|+.. .....|+..++ ++.+ .||.|. |+ ...+ .|...
T Consensus 186 ~A~D~~~~-Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~ 264 (355)
T COG0144 186 VAVDVSPK-RLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELA 264 (355)
T ss_pred EEEcCCHH-HHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHH
Confidence 55555542 1122233333446653 45566766554 2333 599996 22 1211 12111
Q ss_pred --hHHHHHHHhhcccCCcEEEEEcCCCCCC
Q 017068 64 --NATYLIEVDRLLRPGGYLVISGPPVQWP 91 (378)
Q Consensus 64 --~~~~L~Ev~RVLkPGG~lvis~pp~~~~ 91 (378)
....|....++|||||.++.|+=.....
T Consensus 265 ~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 265 KLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 2268889999999999999986544433
No 349
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=73.72 E-value=2.3 Score=40.58 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=21.1
Q ss_pred CCeeEEEecCCcceeeeeeccCCCe
Q 017068 223 PAIRNIMDMNAFFGGFAAALTSDPV 247 (378)
Q Consensus 223 ~~iR~vlDm~ag~g~faa~L~~~~v 247 (378)
..-.+|||+|||.|.++..|.++.-
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~ 52 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK 52 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC
Confidence 3457899999999999999987654
No 350
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=73.72 E-value=3 Score=39.72 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=30.1
Q ss_pred CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 43 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 43 fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.+..++|.+.... .+| +....++.+++++.|||||.+++-.+
T Consensus 126 ~~~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 126 VPTAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 3456666665444 344 44446899999999999999998655
No 351
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=73.42 E-value=2.6 Score=40.66 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=41.4
Q ss_pred hHHHHHHHHHcCC----CeEEEEccc-CCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068 17 HKAQIQFALERGI----PAFVAMLGT-RRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 17 se~~vq~A~erg~----~~~~~v~da-e~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
|....++-++-|. ++....+-= .-+| ++|++||.|.----..+..+-. ...+.+.|+|||+|.|-+..
T Consensus 133 hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~-~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 133 HPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLR-HFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred CHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechhhHHHHHH-HHHHHHhhhcCCCceEEEec
Confidence 4555666555543 222222211 1233 7899999997533224444444 67788999999999997754
No 352
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=73.33 E-value=12 Score=35.68 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=84.4
Q ss_pred ccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeee--ccCCCeeEEEeccCCCC----cch-HHHHhhcc
Q 017068 197 VFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAA--LTSDPVWVMNVVPARKS----STL-SVIYDRGL 269 (378)
Q Consensus 197 ~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~--L~~~~vwvmnv~p~~~~----~~l-~~i~eRGl 269 (378)
......+.|.+.+-+-...+ +.+... -.+++|+|+|-|-=|-- +...++ +|+-.|+- +=| +++-|=||
T Consensus 42 ~~~~~~e~~~rHilDSl~~~-~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~---~vtLles~~Kk~~FL~~~~~eL~L 116 (215)
T COG0357 42 AIRDPEELWQRHILDSLVLL-PYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDL---KVTLLESLGKKIAFLREVKKELGL 116 (215)
T ss_pred CCCCHHHHHHHHHHHHhhhh-hccccc-CCEEEEeCCCCCCchhhHHHhccCC---cEEEEccCchHHHHHHHHHHHhCC
Confidence 34555788888774433321 111111 47899999997743332 333344 34555542 222 56667777
Q ss_pred --ccccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE---eCCHHHHHHHHHHH
Q 017068 270 --IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV---RDSPEVIDKVSRIA 344 (378)
Q Consensus 270 --ig~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii---~d~~~~~~~~~~~~ 344 (378)
+-++|..-|.|..-++-||.|-| |-|.... .++-=.-..|++||+++. ..-.+++.++++-.
T Consensus 117 ~nv~i~~~RaE~~~~~~~~~D~vts-RAva~L~------------~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~ 183 (215)
T COG0357 117 ENVEIVHGRAEEFGQEKKQYDVVTS-RAVASLN------------VLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAI 183 (215)
T ss_pred CCeEEehhhHhhcccccccCcEEEe-ehccchH------------HHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHH
Confidence 67889888887632222998765 4444332 222223578999888743 34567888888888
Q ss_pred hcCCceEEEe
Q 017068 345 NTVRWTAAVH 354 (378)
Q Consensus 345 ~~l~W~~~~~ 354 (378)
..+.+.+..+
T Consensus 184 ~~~~~~~~~~ 193 (215)
T COG0357 184 LPLGGQVEKV 193 (215)
T ss_pred HhhcCcEEEE
Confidence 8888887754
No 353
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=73.08 E-value=5.8 Score=38.43 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=43.4
Q ss_pred CeEEEecCCCCChHHHHHHHHH----cCCC--eEEEEcccC-CCCC------CCCceeEEEecCccccccCChHHHHHHH
Q 017068 5 NILTLSFAPRDSHKAQIQFALE----RGIP--AFVAMLGTR-RLPF------PAFSFDIVHCSRCLIPFTAYNATYLIEV 71 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~e----rg~~--~~~~v~dae-~LPf------pd~SFD~V~cs~~l~hw~~~~~~~L~Ev 71 (378)
.|+|+...| ...+.|++ .|+. +.+..+++. -||- .+++||+|+.-. +...-...+..+
T Consensus 106 ~v~tiE~~~-----~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDa----dK~~Y~~y~~~~ 176 (247)
T PLN02589 106 KILAMDINR-----ENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDA----DKDNYINYHKRL 176 (247)
T ss_pred EEEEEeCCH-----HHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecC----CHHHhHHHHHHH
Confidence 367777664 44445544 3543 566667652 2331 136899998642 222223777888
Q ss_pred hhcccCCcEEEE
Q 017068 72 DRLLRPGGYLVI 83 (378)
Q Consensus 72 ~RVLkPGG~lvi 83 (378)
.+.|+|||.+++
T Consensus 177 l~ll~~GGviv~ 188 (247)
T PLN02589 177 IDLVKVGGVIGY 188 (247)
T ss_pred HHhcCCCeEEEE
Confidence 999999999887
No 354
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=72.85 E-value=4.7 Score=37.87 Aligned_cols=72 Identities=26% Similarity=0.331 Sum_probs=46.2
Q ss_pred CeEEEecCCCCChHHHHHHHHH----cCC--CeEEEEcccCC-CC-----CCCCceeEEEecCccccccCChHHHHHHHh
Q 017068 5 NILTLSFAPRDSHKAQIQFALE----RGI--PAFVAMLGTRR-LP-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVD 72 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~e----rg~--~~~~~v~dae~-LP-----fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~ 72 (378)
.|+|+.+.| ...+.|++ .|. .+.+..+++.. |+ .+.+.||+|+.-. ....-...+..+.
T Consensus 72 ~i~tiE~~~-----~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa----~K~~y~~y~~~~~ 142 (205)
T PF01596_consen 72 KITTIEIDP-----ERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDA----DKRNYLEYFEKAL 142 (205)
T ss_dssp EEEEEESSH-----HHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEES----TGGGHHHHHHHHH
T ss_pred eEEEecCcH-----HHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcc----cccchhhHHHHHh
Confidence 467777765 45555544 354 36677777532 22 2246899998643 2232247888999
Q ss_pred hcccCCcEEEEEc
Q 017068 73 RLLRPGGYLVISG 85 (378)
Q Consensus 73 RVLkPGG~lvis~ 85 (378)
+.|+|||.+++-.
T Consensus 143 ~ll~~ggvii~DN 155 (205)
T PF01596_consen 143 PLLRPGGVIIADN 155 (205)
T ss_dssp HHEEEEEEEEEET
T ss_pred hhccCCeEEEEcc
Confidence 9999999999854
No 355
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=72.57 E-value=1.9 Score=41.21 Aligned_cols=144 Identities=15% Similarity=0.226 Sum_probs=80.4
Q ss_pred HHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeec----cCCC-eeEEEeccCCCCcchHHHHhhcc---cccc--cccc
Q 017068 208 RVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAAL----TSDP-VWVMNVVPARKSSTLSVIYDRGL---IGVY--HDWC 277 (378)
Q Consensus 208 ~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L----~~~~-vwvmnv~p~~~~~~l~~i~eRGl---ig~~--~~w~ 277 (378)
-...|+.+|. ....-++||.+|.+.|==|..| -+.. +.+.=+-|......-+..-+=|+ |=++ .|+-
T Consensus 46 e~g~~L~~L~---~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLA---RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHH---HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 3445666554 3347889999999887333222 2222 32222222211122244444455 1122 4777
Q ss_pred ccCC-CCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC---------C-----HHHHHHHHH
Q 017068 278 EPFS-TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD---------S-----PEVIDKVSR 342 (378)
Q Consensus 278 ~~f~-typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d---------~-----~~~~~~~~~ 342 (378)
+.++ ...-+||||-.+.- +-+...++-+.=++|||||.+|+.+ + ......+..
T Consensus 123 ~~l~~~~~~~fDliFIDad------------K~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~ 190 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDAD------------KADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRD 190 (219)
T ss_pred HHHHhccCCCccEEEEeCC------------hhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHH
Confidence 7776 36689999877532 2333467777778899999999974 1 123434454
Q ss_pred HHhcC----CceEEEecCCCCCCCCeEEEEEEec
Q 017068 343 IANTV----RWTAAVHDKEPGSNGREKILVATKS 372 (378)
Q Consensus 343 ~~~~l----~W~~~~~~~~~~~~~~e~~l~~~K~ 372 (378)
+..-+ +++....- .+++++++.|.
T Consensus 191 ~~~~~~~~~~~~t~~lP------~gDGl~v~~k~ 218 (219)
T COG4122 191 FNDYLLEDPRYDTVLLP------LGDGLLLSRKR 218 (219)
T ss_pred HHHHHhhCcCceeEEEe------cCCceEEEeec
Confidence 44444 44444432 23679998885
No 356
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=70.71 E-value=12 Score=36.11 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=49.0
Q ss_pred CeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCC----CCCceeEEEecCccccccCChHHHHHHHhhcccCCcE
Q 017068 5 NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF----PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGY 80 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPf----pd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~ 80 (378)
-|.|+-|+|+. ....++.|++|. ++.=...|+. .|. -=+.+|+|++-- .+ ++....++..+...||+||.
T Consensus 100 ~VYaVEfs~r~-~rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~VDvI~~DV-aQ--p~Qa~I~~~Na~~fLk~gG~ 173 (229)
T PF01269_consen 100 VVYAVEFSPRS-MRDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMVDVIFQDV-AQ--PDQARIAALNARHFLKPGGH 173 (229)
T ss_dssp EEEEEESSHHH-HHHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--EEEEEEE--SS--TTHHHHHHHHHHHHEEEEEE
T ss_pred cEEEEEecchh-HHHHHHHhccCC-ceeeeeccCC-ChHHhhcccccccEEEecC-CC--hHHHHHHHHHHHhhccCCcE
Confidence 47788898863 345678898883 4443455653 231 134899998742 22 34445788899999999999
Q ss_pred EEEEcC
Q 017068 81 LVISGP 86 (378)
Q Consensus 81 lvis~p 86 (378)
++++..
T Consensus 174 ~~i~iK 179 (229)
T PF01269_consen 174 LIISIK 179 (229)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998754
No 357
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=70.61 E-value=6.8 Score=36.24 Aligned_cols=54 Identities=28% Similarity=0.318 Sum_probs=37.9
Q ss_pred HHcCCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068 25 LERGIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 25 ~erg~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis 84 (378)
.+-|++ +.+....++. +....+||+|++.. +. +.. ..+.-+.+.|++||++++-
T Consensus 93 ~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA-v~---~l~-~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 93 RELGLSNVEVINGRAEE-PEYRESFDVVTARA-VA---PLD-KLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp HHHT-SSEEEEES-HHH-TTTTT-EEEEEEES-SS---SHH-HHHHHHGGGEEEEEEEEEE
T ss_pred HHhCCCCEEEEEeeecc-cccCCCccEEEeeh-hc---CHH-HHHHHHHHhcCCCCEEEEE
Confidence 334666 6667777777 77789999998754 42 223 7888899999999998874
No 358
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=70.50 E-value=1.3 Score=42.30 Aligned_cols=96 Identities=9% Similarity=-0.031 Sum_probs=58.9
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHH-Hhhcccc--------------ccccccccCCCCC-----
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI-YDRGLIG--------------VYHDWCEPFSTYP----- 284 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i-~eRGlig--------------~~~~w~~~f~typ----- 284 (378)
..||+-|||-|-=+..|.++.. .|+-.|-+ .-+.-. -|.|+.- -..-+|--|-..+
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 4789999999999999999887 56666654 333322 2233211 0111121121121
Q ss_pred -CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 285 -RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 285 -rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
..||+|--..+|+.+. +..| ..+.--|-++|||||.+++-
T Consensus 122 ~~~fD~VyDra~~~Alp----p~~R---~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 122 LPVFDIWYDRGAYIALP----NDLR---TNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cCCcCeeeeehhHhcCC----HHHH---HHHHHHHHHHhCCCcEEEEE
Confidence 3688877767777663 1111 36777889999999998763
No 359
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=70.36 E-value=1.7 Score=40.84 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=16.3
Q ss_pred eEEEecCCcceeee--eeccC-CCee
Q 017068 226 RNIMDMNAFFGGFA--AALTS-DPVW 248 (378)
Q Consensus 226 R~vlDm~ag~g~fa--a~L~~-~~vw 248 (378)
++|+|+|||+|.|| |+|+. +-|.
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~ 72 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVL 72 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEE
Confidence 45999999999875 44443 4453
No 360
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=70.19 E-value=5.3 Score=38.42 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=79.1
Q ss_pred cCCCCeeEEEecCCcceeeeeeccCCC-eeEEEeccCCCC-cchHHHHhhccccc----ccccccc---------CCCCC
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDRGLIGV----YHDWCEP---------FSTYP 284 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~~~-vwvmnv~p~~~~-~~l~~i~eRGlig~----~~~w~~~---------f~typ 284 (378)
+...+-++||=+|.|-|+.+..|+..+ + .+|.-++-. ..+.++ |-.++. +.|-+.. +-..+
T Consensus 72 ~~~~~p~~VLiiGgG~G~~~~ell~~~~~--~~i~~VEiD~~Vv~~a--~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 72 LLHPNPKRVLIIGGGDGGTARELLKHPPV--ESITVVEIDPEVVELA--RKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHSSST-EEEEEESTTSHHHHHHTTSTT---SEEEEEES-HHHHHHH--HHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred hcCCCcCceEEEcCCChhhhhhhhhcCCc--ceEEEEecChHHHHHH--HHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 334479999999999999999998877 3 233333332 333322 112211 1111111 23456
Q ss_pred C-ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC-----CHHHHHHHHHHHhcCCceEEEecCCC
Q 017068 285 R-TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHDKEP 358 (378)
Q Consensus 285 r-tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d-----~~~~~~~~~~~~~~l~W~~~~~~~~~ 358 (378)
+ +||+|-.+-.- |.......--...+-.+.|.|+|||.+++.. ..+.+..+.+..++..-.+..+-.--
T Consensus 148 ~~~yDvIi~D~~d-----p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~v 222 (246)
T PF01564_consen 148 EEKYDVIIVDLTD-----PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYV 222 (246)
T ss_dssp ST-EEEEEEESSS-----TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred CCcccEEEEeCCC-----CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEc
Confidence 6 99998764221 1111111111355667889999999999873 34566677777777777776532222
Q ss_pred CCCCC--eEEEEEEecC
Q 017068 359 GSNGR--EKILVATKSL 373 (378)
Q Consensus 359 ~~~~~--e~~l~~~K~~ 373 (378)
.+... =.+.+|.|..
T Consensus 223 P~~~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 223 PSYGSGWWSFASASKDI 239 (246)
T ss_dssp TTSCSSEEEEEEEESST
T ss_pred CeecccceeEEEEeCCC
Confidence 22222 3467777654
No 361
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=69.39 E-value=10 Score=39.42 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=46.2
Q ss_pred CCCChHHHHHHHHHc----CC-CeEEEEcccCC----CCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEE
Q 017068 13 PRDSHKAQIQFALER----GI-PAFVAMLGTRR----LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 83 (378)
Q Consensus 13 p~D~se~~vq~A~er----g~-~~~~~v~dae~----LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvi 83 (378)
..|.|+.+++.|+++ ++ ++.+..+|+.. +++++++||+|++.-- ..... ..+..+.+ |+|++.+++
T Consensus 324 gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP---r~g~~-~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 324 GVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP---RAGAA-EVMQALAK-LGPKRIVYV 398 (443)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC---CcChH-HHHHHHHh-cCCCeEEEE
Confidence 345557888888764 44 36777777643 4577789999987421 11122 45555555 699999999
Q ss_pred EcCCCC
Q 017068 84 SGPPVQ 89 (378)
Q Consensus 84 s~pp~~ 89 (378)
|-.|..
T Consensus 399 SCnp~t 404 (443)
T PRK13168 399 SCNPAT 404 (443)
T ss_pred EeChHH
Confidence 866543
No 362
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=68.92 E-value=14 Score=38.11 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=35.4
Q ss_pred CCCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcEEEEEc
Q 017068 43 FPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 43 fpd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~lvis~ 85 (378)
.++++||.++.+.. ..|.++. ...++++.|+++|||++++-+
T Consensus 291 ~~~~s~~~~vL~D~-~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 291 LPPGSFDRFVLSDH-MDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CCCCCeeEEEecch-hhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 68999999999885 5777765 478899999999999999843
No 363
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=68.87 E-value=4.2 Score=36.77 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=30.2
Q ss_pred CCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 44 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 44 pd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
....||+|+++.|++.- ..-..++.=+.++|+|+|.++++.+
T Consensus 116 ~~~~~D~IlasDv~Y~~-~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 116 EPHSFDVILASDVLYDE-ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp S-SSBSEEEEES--S-G-GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccccCCEEEEecccchH-HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 45689999999998763 3334888999999999999888765
No 364
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=67.26 E-value=3.5 Score=40.59 Aligned_cols=45 Identities=9% Similarity=0.362 Sum_probs=36.2
Q ss_pred CccceeeeecccccCCCeEEEeCC---------------HH-HHHHHHHHHhcCCceEEEe
Q 017068 310 SLVDLMVEMDRMLRPEGTVVVRDS---------------PE-VIDKVSRIANTVRWTAAVH 354 (378)
Q Consensus 310 ~~~~~l~EmDRiLRPgG~~ii~d~---------------~~-~~~~~~~~~~~l~W~~~~~ 354 (378)
||-++|-.|.++|+|||+||=-++ .+ .+++|..+++++-|+....
T Consensus 180 Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 180 NIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred HHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 456889999999999998886432 22 5899999999999998753
No 365
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=66.62 E-value=9.6 Score=38.68 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=46.7
Q ss_pred CCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcCCCCCCcc----c------hHHHHHHHHHHHhceeeecc
Q 017068 45 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ----D------KEWADLQAVARALCYELIAV 114 (378)
Q Consensus 45 d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~pp~~~~~~----~------~~w~~l~~l~~~lcw~~~~~ 114 (378)
.++||+|+..+ ++.-...--..+.-+..+|||||+++=-+|-.+.... + -..+.+..+++.+.|....+
T Consensus 257 ~~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 257 AGSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CCccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEe
Confidence 35799997543 3332222237888999999999999976763332211 1 12667888899999988776
Q ss_pred c
Q 017068 115 D 115 (378)
Q Consensus 115 ~ 115 (378)
.
T Consensus 336 ~ 336 (369)
T KOG2798|consen 336 R 336 (369)
T ss_pred e
Confidence 5
No 366
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=65.75 E-value=5.1 Score=39.20 Aligned_cols=105 Identities=16% Similarity=0.232 Sum_probs=59.8
Q ss_pred eEEEecCCcceeeeeecc----CC-CeeEEEeccCCCCcchHHHHhh----cccc----ccccccccCCCCCCccccccc
Q 017068 226 RNIMDMNAFFGGFAAALT----SD-PVWVMNVVPARKSSTLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDLIHV 292 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~----~~-~vwvmnv~p~~~~~~l~~i~eR----Glig----~~~~w~~~f~typrtyDliH~ 292 (378)
-.|||.|.|+|.++|+|+ +. .|++.-+-+ +.++.+.+. ||.- ...|-++... +..||.|-.
T Consensus 96 ~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~----d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--~~~vDav~L 169 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE----DFAKTARENLSEFGLGDRVTLKLGDVREGID--EEDVDAVFL 169 (256)
T ss_pred CEEEEcccCchHHHHHHHHhhCCCceEEEEEecH----HHHHHHHHHHHHhccccceEEEecccccccc--ccccCEEEE
Confidence 369999999999999998 32 344433322 333322221 4422 1245555432 346776665
Q ss_pred cCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-HHHHHHHHHHHhcCCce
Q 017068 293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWT 350 (378)
Q Consensus 293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-~~~~~~~~~~~~~l~W~ 350 (378)
+ +-..| .+|=-++.+|+|||.+++--+ .+.++++-+-++..+|.
T Consensus 170 D-mp~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 170 D-LPDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred c-CCChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 3 11222 366667899999999988754 44455544444444553
No 367
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=65.69 E-value=2.4 Score=40.51 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.4
Q ss_pred ceeeeecccccCCCeEEEeCC
Q 017068 313 DLMVEMDRMLRPEGTVVVRDS 333 (378)
Q Consensus 313 ~~l~EmDRiLRPgG~~ii~d~ 333 (378)
.+|.|.-=+||+||.++...+
T Consensus 164 ~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred hHHHHHHhhhhcCceEEEEee
Confidence 678888899999999977644
No 368
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=64.81 E-value=16 Score=37.27 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=47.3
Q ss_pred CCeEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEE
Q 017068 4 ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 83 (378)
Q Consensus 4 ~~v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvi 83 (378)
..|++++.. +.-.+.|++-|....+...+...+.--.+.||+|+..-. . ..+....+.||+||++++
T Consensus 191 a~Via~~~~-----~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-------~-~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 191 AEVIAITRS-----EEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-------P-ATLEPSLKALRRGGTLVL 257 (339)
T ss_pred CeEEEEeCC-----hHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-------h-hhHHHHHHHHhcCCEEEE
Confidence 456666655 688889999887644432222222211223999986321 2 778999999999999999
Q ss_pred EcCC
Q 017068 84 SGPP 87 (378)
Q Consensus 84 s~pp 87 (378)
.+.+
T Consensus 258 vG~~ 261 (339)
T COG1064 258 VGLP 261 (339)
T ss_pred ECCC
Confidence 8764
No 369
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=63.07 E-value=16 Score=36.05 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHc-------CCCeEEEEcccCCCCCCCCceeEEEecCcccccc-CChHHHHHHHhhcccCCcEEEEEc
Q 017068 14 RDSHKAQIQFALER-------GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 14 ~D~se~~vq~A~er-------g~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~-~~~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
.|++++.++.|++- +....+..+|....+..-..||+|+.+... -.. .+..+.+..+.+..+||..+++-.
T Consensus 152 iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 152 IDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 34445667776541 334567778877777766899999876532 221 233599999999999999999854
No 370
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.59 E-value=13 Score=35.86 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=37.6
Q ss_pred eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEc
Q 017068 31 AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 31 ~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~ 85 (378)
..+.++|....-=+.+.||.|||.... . ...+++...|+|||.+++-.
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa------~-~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA------S-ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc------c-ccHHHHHHhhccCCeEEEee
Confidence 346788887777778899999997543 1 56688999999999999843
No 371
>PF14881 Tubulin_3: Tubulin domain
Probab=60.87 E-value=8.5 Score=35.51 Aligned_cols=34 Identities=26% Similarity=0.632 Sum_probs=26.8
Q ss_pred CCeeEEEecCCcceeeeeecc--------CCCe-eEEEeccCC
Q 017068 223 PAIRNIMDMNAFFGGFAAALT--------SDPV-WVMNVVPAR 256 (378)
Q Consensus 223 ~~iR~vlDm~ag~g~faa~L~--------~~~v-wvmnv~p~~ 256 (378)
.++..+.|+-.|.||||+.++ ++++ |+.++.+..
T Consensus 75 QGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~ 117 (180)
T PF14881_consen 75 QGFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPS 117 (180)
T ss_pred cceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCcc
Confidence 369999999999999999996 4564 877665444
No 372
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=60.07 E-value=44 Score=31.31 Aligned_cols=53 Identities=25% Similarity=0.180 Sum_probs=36.3
Q ss_pred CCC-eEEEEccc-CCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 28 GIP-AFVAMLGT-RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 28 g~~-~~~~v~da-e~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
|++ +.+..+++ +.|+=.+ +||.|+..-. - ..+ ..|+.+...|||||+++...-
T Consensus 82 g~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg-~---~i~-~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 82 GVDNLEVVEGDAPEALPDLP-SPDAIFIGGG-G---NIE-EILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCcEEEEeccchHhhcCCC-CCCEEEECCC-C---CHH-HHHHHHHHHcCcCCeEEEEee
Confidence 554 44556665 3344222 8999997665 2 233 888999999999999998653
No 373
>PRK13699 putative methylase; Provisional
Probab=59.95 E-value=8.6 Score=36.53 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=33.6
Q ss_pred cceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCceEE---EecCC------CCCCCCeEEEEEEec
Q 017068 312 VDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA---VHDKE------PGSNGREKILVATKS 372 (378)
Q Consensus 312 ~~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W~~~---~~~~~------~~~~~~e~~l~~~K~ 372 (378)
..++-|+-|||+|||.+++--....+..+....+...|.+. +-+.. ......|-++++.|.
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~ 121 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKG 121 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEeeEEEEECCCCCCCCCCccceeEEEEEECC
Confidence 46789999999999999874332222333333333333321 11111 112345888888875
No 374
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=59.77 E-value=2.6 Score=41.37 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=37.3
Q ss_pred CCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCHH
Q 017068 283 YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE 335 (378)
Q Consensus 283 yprtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~~ 335 (378)
++.-||+|-|=.++.+.. .+.. ..++-.+...|+|||++++-.+..
T Consensus 199 ~~~~fD~IfCRNVLIYFd---~~~q----~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFD---EETQ----ERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred ccCCCCEEEEcceEEeeC---HHHH----HHHHHHHHHHhCCCCEEEEccCcc
Confidence 778999999999998875 1111 578899999999999999976543
No 375
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=59.15 E-value=19 Score=35.61 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=47.5
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCC-CCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPF-PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 78 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPf-pd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG 78 (378)
.|+++++. +.+++.|+++ ++. +.+..+|++.+.. .++.||+|++.- +...- ...+.+...-++|+
T Consensus 197 ~V~gvD~s-----~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP---Pr~G~-~~~~~~~l~~~~~~ 267 (315)
T PRK03522 197 QLTGIEIS-----AEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP---PRRGI-GKELCDYLSQMAPR 267 (315)
T ss_pred EEEEEeCC-----HHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC---CCCCc-cHHHHHHHHHcCCC
Confidence 35555554 6777777654 553 6788888876543 356799998752 11111 13444555557889
Q ss_pred cEEEEEcCCCCC
Q 017068 79 GYLVISGPPVQW 90 (378)
Q Consensus 79 G~lvis~pp~~~ 90 (378)
+.+++|..|...
T Consensus 268 ~ivyvsc~p~t~ 279 (315)
T PRK03522 268 FILYSSCNAQTM 279 (315)
T ss_pred eEEEEECCcccc
Confidence 988888765443
No 376
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=58.77 E-value=4.5 Score=37.96 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=52.4
Q ss_pred CccccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccC--CCeeEEEeccCC-CCcch-HHHHhhcc
Q 017068 194 GYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS--DPVWVMNVVPAR-KSSTL-SVIYDRGL 269 (378)
Q Consensus 194 ~~~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~--~~vwvmnv~p~~-~~~~l-~~i~eRGl 269 (378)
+.-.|......-++++.+. +..| .+|+||-||+|.|+-.++. +...|..+-.-. +-.-| .-+..-++
T Consensus 80 ~kvyfs~rl~~Er~Ri~~~-------v~~~--e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv 150 (200)
T PF02475_consen 80 SKVYFSPRLSTERRRIANL-------VKPG--EVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV 150 (200)
T ss_dssp TTS---GGGHHHHHHHHTC---------TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred ceEEEccccHHHHHHHHhc-------CCcc--eEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC
Confidence 3445676666666666432 3444 5999999999999987775 555443332221 11222 22222233
Q ss_pred ---c-cccccccccCCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeE
Q 017068 270 ---I-GVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTV 328 (378)
Q Consensus 270 ---i-g~~~~w~~~f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ 328 (378)
| .+..|-.+ |.. ...+|-+.+... ..+ ...|-+.-+++|+||.+
T Consensus 151 ~~~i~~~~~D~~~-~~~-~~~~drvim~lp-----------~~~--~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 151 ENRIEVINGDARE-FLP-EGKFDRVIMNLP-----------ESS--LEFLDAALSLLKEGGII 198 (200)
T ss_dssp TTTEEEEES-GGG-----TT-EEEEEE--T-----------SSG--GGGHHHHHHHEEEEEEE
T ss_pred CCeEEEEcCCHHH-hcC-ccccCEEEECCh-----------HHH--HHHHHHHHHHhcCCcEE
Confidence 2 33445433 332 567775554311 111 24666677888888865
No 377
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=58.66 E-value=39 Score=30.64 Aligned_cols=99 Identities=13% Similarity=0.265 Sum_probs=59.2
Q ss_pred CCeEEEecCCCC-------ChHHHHHHHHHcCCCeEEEEcccCCCC----CCCCceeEEEecCcccccc-----CCh---
Q 017068 4 ENILTLSFAPRD-------SHKAQIQFALERGIPAFVAMLGTRRLP----FPAFSFDIVHCSRCLIPFT-----AYN--- 64 (378)
Q Consensus 4 ~~v~~ms~ap~D-------~se~~vq~A~erg~~~~~~v~dae~LP----fpd~SFD~V~cs~~l~hw~-----~~~--- 64 (378)
.+|+|=++...+ ..+..++.-++.|+.+.+.+ |+.+|. ...+.||.|+-++ -|.. ...
T Consensus 22 ~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~V-Dat~l~~~~~~~~~~FDrIiFNF--PH~G~~~~~~~~~i~ 98 (166)
T PF10354_consen 22 TNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGV-DATKLHKHFRLKNQRFDRIIFNF--PHVGGGSEDGKRNIR 98 (166)
T ss_pred CeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCC-CCCcccccccccCCcCCEEEEeC--CCCCCCccchhHHHH
Confidence 355665555443 23455666667777666543 666654 3679999998654 4444 011
Q ss_pred ------HHHHHHHhhcccCCcEEEEEcCCCCCCccchHHHHHHHHHHHhce
Q 017068 65 ------ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCY 109 (378)
Q Consensus 65 ------~~~L~Ev~RVLkPGG~lvis~pp~~~~~~~~~w~~l~~l~~~lcw 109 (378)
..+++.+.++|+++|.+.++.... .++..|+ ++.+|..-..
T Consensus 99 ~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~---~py~~W~-i~~lA~~~gl 145 (166)
T PF10354_consen 99 LNRELLRGFFKSASQLLKPDGEIHVTLKDG---QPYDSWN-IEELAAEAGL 145 (166)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEeCCC---CCCcccc-HHHHHHhcCC
Confidence 256788899999999999985411 1123355 4456664333
No 378
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=58.44 E-value=16 Score=35.04 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=46.4
Q ss_pred CeEEEecCCCCChHHHHHHHHHc---------CCCeEEEEcccCC-CCCCCC-ceeEEEecCccccccCC----hHHHHH
Q 017068 5 NILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGTRR-LPFPAF-SFDIVHCSRCLIPFTAY----NATYLI 69 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er---------g~~~~~~v~dae~-LPfpd~-SFD~V~cs~~l~hw~~~----~~~~L~ 69 (378)
.|+.+.+. ++.++.|++- ...+.+...|+.. |--..+ .||+|+.-..- ..... ....++
T Consensus 102 ~i~~VEiD-----~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~ 175 (246)
T PF01564_consen 102 SITVVEID-----PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQ 175 (246)
T ss_dssp EEEEEES------HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHH
T ss_pred eEEEEecC-----hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHH
Confidence 35555555 5888888773 1245667777522 111233 89999864322 22111 138899
Q ss_pred HHhhcccCCcEEEEEcC
Q 017068 70 EVDRLLRPGGYLVISGP 86 (378)
Q Consensus 70 Ev~RVLkPGG~lvis~p 86 (378)
.+.|.|+|||.+++...
T Consensus 176 ~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 176 LCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp HHHHHEEEEEEEEEEEE
T ss_pred HHHhhcCCCcEEEEEcc
Confidence 99999999999998653
No 379
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=58.07 E-value=8.6 Score=39.43 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=31.4
Q ss_pred CCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 281 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 281 ~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
|+-..|||.+-+.-...+. -+...++-|+=|+|.|||++|.-
T Consensus 173 ~fedn~fd~v~~ld~~~~~---------~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 173 PFEDNTFDGVRFLEVVCHA---------PDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CCCccccCcEEEEeecccC---------CcHHHHHHHHhcccCCCceEEeH
Confidence 3445899998775444432 23468999999999999999986
No 380
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=58.06 E-value=16 Score=37.62 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=46.0
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCC----CCCCCCceeEEEecCccccccCChHHHHHHHhhcc
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR----LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLL 75 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~----LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVL 75 (378)
.|+++++. +.+++.|+++ ++ .+.+..+|++. +++.+++||+|++.--. ..-...+++++.+ |
T Consensus 316 ~V~~vE~~-----~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr---~G~~~~~l~~l~~-l 386 (431)
T TIGR00479 316 SVVGIEVV-----PESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR---KGCAAEVLRTIIE-L 386 (431)
T ss_pred EEEEEEcC-----HHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC---CCCCHHHHHHHHh-c
Confidence 45555554 6777777764 44 36677788654 34567789999863221 1111266666655 8
Q ss_pred cCCcEEEEEcCC
Q 017068 76 RPGGYLVISGPP 87 (378)
Q Consensus 76 kPGG~lvis~pp 87 (378)
+|++.+++|-.|
T Consensus 387 ~~~~ivyvsc~p 398 (431)
T TIGR00479 387 KPERIVYVSCNP 398 (431)
T ss_pred CCCEEEEEcCCH
Confidence 999988887543
No 381
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=57.52 E-value=6.2 Score=35.56 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=18.9
Q ss_pred HHHHHHHhhcccCCcEEEEEcC
Q 017068 65 ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 65 ~~~L~Ev~RVLkPGG~lvis~p 86 (378)
...+.|+.|+|||||.+++...
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHHhhcCCCeeEEEEec
Confidence 3789999999999999998765
No 382
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=56.98 E-value=14 Score=37.12 Aligned_cols=125 Identities=20% Similarity=0.353 Sum_probs=76.5
Q ss_pred CCCeeEEEecCCcceeeee-eccCCCeeEEEeccCCCC-cch----HHHHhhccccc--cccccccCC--CCC---Cccc
Q 017068 222 TPAIRNIMDMNAFFGGFAA-ALTSDPVWVMNVVPARKS-STL----SVIYDRGLIGV--YHDWCEPFS--TYP---RTYD 288 (378)
Q Consensus 222 ~~~iR~vlDm~ag~g~faa-~L~~~~vwvmnv~p~~~~-~~l----~~i~eRGlig~--~~~w~~~f~--typ---rtyD 288 (378)
.|+==.||||-||.|.--- +|.+.+--+-+|.-.|-+ ..+ ..|.+|||-++ ++. -.+|. +|- -.++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~-~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQ-GDAFDRDSLAALDPAPT 211 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEe-cCCCCHhHhhccCCCCC
Confidence 3444458999999997411 122233222355555533 333 78999999554 211 12222 121 3468
Q ss_pred cccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH--HHHHHHHHHHhcC----CceEEE
Q 017068 289 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--EVIDKVSRIANTV----RWTAAV 353 (378)
Q Consensus 289 liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~--~~~~~~~~~~~~l----~W~~~~ 353 (378)
|+-.+++|.++. +.-.+..-|-=+-++|.||||+|..... -.++.|...+.+- -|-++.
T Consensus 212 l~iVsGL~ElF~------Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr 276 (311)
T PF12147_consen 212 LAIVSGLYELFP------DNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR 276 (311)
T ss_pred EEEEecchhhCC------cHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe
Confidence 999999998875 3233344556688999999999999853 4566666666553 576654
No 383
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=56.26 E-value=6.7 Score=37.79 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=44.8
Q ss_pred CCChHHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccC-CcEEEEE
Q 017068 14 RDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP-GGYLVIS 84 (378)
Q Consensus 14 ~D~se~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkP-GG~lvis 84 (378)
...|..|...-++++..+.-. .+-.+ .|=.||+|.|-..+-- ...+.+.|+.++-||+| .|..+++
T Consensus 140 TElS~tMr~rL~kk~ynVl~~-~ew~~---t~~k~dli~clNlLDR-c~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 140 TELSWTMRDRLKKKNYNVLTE-IEWLQ---TDVKLDLILCLNLLDR-CFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHhhHHHHHHHhhcCCceeee-hhhhh---cCceeehHHHHHHHHh-hcChHHHHHHHHHHhccCCCcEEEE
Confidence 346777887777776554322 12112 2556999999776533 33445999999999999 8988875
No 384
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=56.14 E-value=9.4 Score=37.76 Aligned_cols=127 Identities=15% Similarity=0.158 Sum_probs=73.5
Q ss_pred hhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHHHhhccccccccccc-c------------CCCCC
Q 017068 218 VKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCE-P------------FSTYP 284 (378)
Q Consensus 218 ~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~-~------------f~typ 284 (378)
+++..++-|.||=+|-|-||.+-.+++.+- +=.++-++-- --=+.+-|..++..|.+.. + .-.++
T Consensus 70 ~~~ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID-~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 70 PLLAHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEID-PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhhhCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcC-HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 456778889999999999999999887762 1112222221 1123456777777764444 1 23456
Q ss_pred CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceE
Q 017068 285 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTA 351 (378)
Q Consensus 285 rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~ 351 (378)
.+||+|-++. .++..+...=--....-...|.|+|+|.++.+.. .+.+..+.+-.+++.+..
T Consensus 148 ~~fDvIi~D~-----tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~ 214 (282)
T COG0421 148 EKFDVIIVDS-----TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIV 214 (282)
T ss_pred CcCCEEEEcC-----CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhcccc
Confidence 7999987741 1111110000002344457899999999999832 133344444455554443
No 385
>PLN02672 methionine S-methyltransferase
Probab=55.98 E-value=28 Score=40.68 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=17.4
Q ss_pred HHHHHHhhcccCCcEEEEEc
Q 017068 66 TYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 66 ~~L~Ev~RVLkPGG~lvis~ 85 (378)
+++.+..++|||||.+++-.
T Consensus 259 ~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 259 RAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred HHHHHHHHhccCCCEEEEEE
Confidence 67889999999999999854
No 386
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=54.59 E-value=9.3 Score=38.65 Aligned_cols=148 Identities=11% Similarity=0.107 Sum_probs=74.0
Q ss_pred cccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHhh----cc--c
Q 017068 198 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--I 270 (378)
Q Consensus 198 F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--i 270 (378)
|..+...-..-++...+.+. ...+ | |||++||+|.|+-+|....- .|+-++.. ..+..+-+. |+ +
T Consensus 176 ~Q~N~~~~~~l~~~v~~~~~--~~~~--~-vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v 247 (353)
T TIGR02143 176 TQPNAAVNIKMLEWACEVTQ--GSKG--D-LLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNV 247 (353)
T ss_pred ccCCHHHHHHHHHHHHHHhh--cCCC--c-EEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcE
Confidence 43444444444444444332 1122 3 99999999999998887644 45555654 555444432 22 1
Q ss_pred ccc-ccccccCCC------CC---------CccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCCH
Q 017068 271 GVY-HDWCEPFST------YP---------RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 334 (378)
Q Consensus 271 g~~-~~w~~~f~t------yp---------rtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~~ 334 (378)
-++ .|..+.++. .+ ..||.|-.+ | .|..+..-++ +.|++|++.++++=+.
T Consensus 248 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lD--------P----PR~G~~~~~l--~~l~~~~~ivYvsC~p 313 (353)
T TIGR02143 248 QIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVD--------P----PRAGLDPDTC--KLVQAYERILYISCNP 313 (353)
T ss_pred EEEEcCHHHHHHHHhhccccccccccccccCCCCEEEEC--------C----CCCCCcHHHH--HHHHcCCcEEEEEcCH
Confidence 111 111110110 00 014554442 1 2344333222 3567799999999666
Q ss_pred HH-HHHHHHHHhcCCceEEE---ecCCCCCCCCeEEEEE
Q 017068 335 EV-IDKVSRIANTVRWTAAV---HDKEPGSNGREKILVA 369 (378)
Q Consensus 335 ~~-~~~~~~~~~~l~W~~~~---~~~~~~~~~~e~~l~~ 369 (378)
.+ ...++.+.++ |++.. .|-=+.+..=|-+..-
T Consensus 314 ~tlaRDl~~L~~~--Y~l~~v~~~DmFP~T~HvE~v~lL 350 (353)
T TIGR02143 314 ETLKANLEQLSET--HRVERFALFDQFPYTHHMECGVLL 350 (353)
T ss_pred HHHHHHHHHHhcC--cEEEEEEEcccCCCCCcEEEEEEE
Confidence 54 4456666655 87653 3433333333555444
No 387
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=54.54 E-value=7 Score=37.87 Aligned_cols=134 Identities=15% Similarity=0.183 Sum_probs=67.5
Q ss_pred CCCCeeEEEecCCcceeeee----eccCC-CeeEEEeccCCCCcchHHHHhhcccc----ccccccccCCC------CCC
Q 017068 221 GTPAIRNIMDMNAFFGGFAA----ALTSD-PVWVMNVVPARKSSTLSVIYDRGLIG----VYHDWCEPFST------YPR 285 (378)
Q Consensus 221 ~~~~iR~vlDm~ag~g~faa----~L~~~-~vwvmnv~p~~~~~~l~~i~eRGlig----~~~~w~~~f~t------ypr 285 (378)
+..+-++||.+|+++|==|. ++-+. .|.++=.-|....---+.+-.-|+-. ...+-.+.++. ++.
T Consensus 76 ~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 33457899999988773222 22222 23333222211111113334445411 11222222222 456
Q ss_pred ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC--------------HHH-------HHH-HHHH
Q 017068 286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--------------PEV-------IDK-VSRI 343 (378)
Q Consensus 286 tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~--------------~~~-------~~~-~~~~ 343 (378)
+||+|-.+.-=..| ..++-..=+.|||||.+|+.+. ... +.+ .+.+
T Consensus 156 ~fD~iFiDadK~~Y------------~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v 223 (247)
T PLN02589 156 TFDFIFVDADKDNY------------INYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKAL 223 (247)
T ss_pred cccEEEecCCHHHh------------HHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHH
Confidence 89998876432222 2232222379999999998742 011 112 2334
Q ss_pred HhcCCceEEEecCCCCCCCCeEEEEEEec
Q 017068 344 ANTVRWTAAVHDKEPGSNGREKILVATKS 372 (378)
Q Consensus 344 ~~~l~W~~~~~~~~~~~~~~e~~l~~~K~ 372 (378)
...=+++...... .+++++++|.
T Consensus 224 ~~d~~~~~~llPi------gDGl~l~~k~ 246 (247)
T PLN02589 224 AADPRIEICMLPV------GDGITLCRRI 246 (247)
T ss_pred HhCCCEEEEEEEe------CCccEEEEEe
Confidence 6667788877644 3568888885
No 388
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=54.40 E-value=34 Score=33.61 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.5
Q ss_pred HHHHHHhhcccCCcEEEEEc
Q 017068 66 TYLIEVDRLLRPGGYLVISG 85 (378)
Q Consensus 66 ~~L~Ev~RVLkPGG~lvis~ 85 (378)
+.+.++.+.|+|||.+++-.
T Consensus 219 ~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 219 RILGEAPDILKPGGVLILEI 238 (280)
T ss_pred HHHHhhHHHcCCCcEEEEEE
Confidence 67889999999999999854
No 389
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=54.18 E-value=19 Score=37.30 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.4
Q ss_pred CCCCCceeEEEecCccccccC
Q 017068 42 PFPAFSFDIVHCSRCLIPFTA 62 (378)
Q Consensus 42 Pfpd~SFD~V~cs~~l~hw~~ 62 (378)
=||++|.+++|+++++ ||..
T Consensus 157 LfP~~Slh~~~Ss~sl-HWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWLS 176 (386)
T ss_pred ccCCCceEEEEeeccc-eecc
Confidence 3999999999999987 7855
No 390
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=54.08 E-value=34 Score=33.91 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=46.9
Q ss_pred CeEEEecCCCCChHHHHHHHHHcC---------CCeEEEEcccCC-CCCCCCceeEEEecCccccccCC-----hHHHHH
Q 017068 5 NILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAY-----NATYLI 69 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg---------~~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~-----~~~~L~ 69 (378)
.++.+.|. ++.|+.|++.- ..+.+...|+.+ +.=....||+|++-. --+. .+ ...+++
T Consensus 102 ~i~~VEID-----~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~-tdp~-gp~~~Lft~eFy~ 174 (282)
T COG0421 102 RITMVEID-----PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS-TDPV-GPAEALFTEEFYE 174 (282)
T ss_pred eEEEEEcC-----HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC-CCCC-CcccccCCHHHHH
Confidence 45556665 58999998862 112445555432 221233899998643 2121 12 248999
Q ss_pred HHhhcccCCcEEEEEc
Q 017068 70 EVDRLLRPGGYLVISG 85 (378)
Q Consensus 70 Ev~RVLkPGG~lvis~ 85 (378)
.+.|.|+++|.++...
T Consensus 175 ~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 175 GCRRALKEDGIFVAQA 190 (282)
T ss_pred HHHHhcCCCcEEEEec
Confidence 9999999999999863
No 391
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=54.06 E-value=27 Score=35.15 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=49.5
Q ss_pred EecCCCCChHHHHHHHHHcCC----C-eEE--EEccc----CCCCC--CCCceeEEEe-cCccccccCCh-HHHHHHHhh
Q 017068 9 LSFAPRDSHKAQIQFALERGI----P-AFV--AMLGT----RRLPF--PAFSFDIVHC-SRCLIPFTAYN-ATYLIEVDR 73 (378)
Q Consensus 9 ms~ap~D~se~~vq~A~erg~----~-~~~--~v~da----e~LPf--pd~SFD~V~c-s~~l~hw~~~~-~~~L~Ev~R 73 (378)
....|.|+|+++++.|.++-. | +.+ ..+|- ..||= ......+++. ..++-++...+ ..+|+++.+
T Consensus 105 ~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~ 184 (319)
T TIGR03439 105 VDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLA 184 (319)
T ss_pred ceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHH
Confidence 456788999999999988632 3 222 23332 11321 1234555553 34666666554 478899999
Q ss_pred -cccCCcEEEEEc
Q 017068 74 -LLRPGGYLVISG 85 (378)
Q Consensus 74 -VLkPGG~lvis~ 85 (378)
.|+|||.|++..
T Consensus 185 ~~l~~~d~lLiG~ 197 (319)
T TIGR03439 185 TALSPSDSFLIGL 197 (319)
T ss_pred hhCCCCCEEEEec
Confidence 999999999964
No 392
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=53.35 E-value=4.1 Score=39.77 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=59.1
Q ss_pred CeeEEEecCCcceeeeeeccCCCeeE--EEeccCCCC-cchHH--HHhhcccccccc-ccccCC----CCCCcccccccc
Q 017068 224 AIRNIMDMNAFFGGFAAALTSDPVWV--MNVVPARKS-STLSV--IYDRGLIGVYHD-WCEPFS----TYPRTYDLIHVS 293 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~~~vwv--mnv~p~~~~-~~l~~--i~eRGlig~~~~-w~~~f~----typrtyDliH~~ 293 (378)
.-++|||.|||.|.- .+.-.++|- -.+...|.+ .++++ .+.+.....-+. |...+- +. ...|||-++
T Consensus 33 ~P~~vLD~GsGpGta--~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTA--LWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF-PPDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHH--HHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC-CCCcEEEEe
Confidence 567899999999853 333333442 244555655 44432 222333332222 332221 11 234999999
Q ss_pred CccccccCCCCCCCCCCccceeeeecccccCCCeEEEeCC-----HHHHHHHHHHHhcCCceEE
Q 017068 294 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTAA 352 (378)
Q Consensus 294 ~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~-----~~~~~~~~~~~~~l~W~~~ 352 (378)
++++.+.+ ..| ..++-.+=+ +-.+++||=|. -..+.++.+.+....+.+.
T Consensus 110 ~~L~EL~~----~~r---~~lv~~LW~--~~~~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 110 YVLNELPS----AAR---AELVRSLWN--KTAPVLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred hhhhcCCc----hHH---HHHHHHHHH--hccCcEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 99997751 111 222222211 23447777653 2356666666654444444
No 393
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=52.23 E-value=7.2 Score=38.60 Aligned_cols=36 Identities=8% Similarity=0.186 Sum_probs=25.8
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHH
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI 264 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i 264 (378)
.+|+|+|||.|.++..|++... .|+..+-. ..++.+
T Consensus 38 ~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l 74 (294)
T PTZ00338 38 DTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAEL 74 (294)
T ss_pred CEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHH
Confidence 4799999999999999987654 34555544 444443
No 394
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=51.48 E-value=3.7 Score=40.10 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=73.5
Q ss_pred eeEEEecCCcceeeeeeccCCCe-eEEEeccCCCCcchHH----HHhhcc----cc-ccccccccCCCCC-Cccccc-cc
Q 017068 225 IRNIMDMNAFFGGFAAALTSDPV-WVMNVVPARKSSTLSV----IYDRGL----IG-VYHDWCEPFSTYP-RTYDLI-HV 292 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~~v-wvmnv~p~~~~~~l~~----i~eRGl----ig-~~~~w~~~f~typ-rtyDli-H~ 292 (378)
=-+|||.=.|.|=+|+.-+.+.- .|.+|-- | +|-|++ =+.|+| |- ++.|--+...+++ -+||.| |-
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEk-d-p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEK-D-PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEee-C-CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 35799999999999887766553 4443321 1 111111 134444 11 2344444455666 579964 54
Q ss_pred cCccccccCCCCCCCCCCccceeeeecccccCCCeEEE--eCC------HHHHHHHHHHHhcCCceEEEecCCCCCCCCe
Q 017068 293 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV--RDS------PEVIDKVSRIANTVRWTAAVHDKEPGSNGRE 364 (378)
Q Consensus 293 ~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii--~d~------~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e 364 (378)
--=||.-. .--+ +.+--|+-|||||||-+.= ..+ .+....+.+-+++.-..+..... |
T Consensus 213 PPRfS~Ag------eLYs-eefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~-------~ 278 (287)
T COG2521 213 PPRFSLAG------ELYS-EEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR-------E 278 (287)
T ss_pred CCccchhh------hHhH-HHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh-------h
Confidence 43444211 1011 4566799999999998753 221 34566666667777777554332 2
Q ss_pred EE-EEEEec
Q 017068 365 KI-LVATKS 372 (378)
Q Consensus 365 ~~-l~~~K~ 372 (378)
.+ ++|+|+
T Consensus 279 ~~gv~A~k~ 287 (287)
T COG2521 279 ALGVVAVKP 287 (287)
T ss_pred ccceEEecC
Confidence 33 667763
No 395
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=50.88 E-value=44 Score=31.99 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=39.3
Q ss_pred CeEEEecCCCCChHHHHHHHHHcCCCeE-EEEcccC-----CCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068 5 NILTLSFAPRDSHKAQIQFALERGIPAF-VAMLGTR-----RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 78 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg~~~~-~~v~dae-----~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG 78 (378)
.|+|+++++ .|+...++....+. +...+.+ .++..-..||+++++.+ ..+..+.+.|+|
T Consensus 100 ~v~avD~~~-----~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~---------~~l~~i~~~l~~- 164 (228)
T TIGR00478 100 EVYGVDVGY-----NQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI---------SILPELDLLLNP- 164 (228)
T ss_pred EEEEEeCCH-----HHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH---------hHHHHHHHHhCc-
Confidence 467777664 56665444443322 2222333 23323347888887764 357899999999
Q ss_pred cEEEEEc
Q 017068 79 GYLVISG 85 (378)
Q Consensus 79 G~lvis~ 85 (378)
|.+++-.
T Consensus 165 ~~~~~L~ 171 (228)
T TIGR00478 165 NDLTLLF 171 (228)
T ss_pred CeEEEEc
Confidence 8777543
No 396
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=47.99 E-value=7.8 Score=38.58 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=32.1
Q ss_pred CCCCCCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEE
Q 017068 280 FSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 330 (378)
Q Consensus 280 f~typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii 330 (378)
.|.-+-+||..=...+.+.+. .++.=..+|-|+=|.|||||...+
T Consensus 97 ~p~~~~s~d~~lsiavihhls------T~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 97 LPFREESFDAALSIAVIHHLS------TRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred CCCCCCccccchhhhhhhhhh------hHHHHHHHHHHHHHHhcCCCceEE
Confidence 343336888876666666554 455557899999999999998544
No 397
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=47.77 E-value=2.4 Score=40.19 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=72.0
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHH-Hhhccc------ccccc--------ccccCCCCC----C
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI-YDRGLI------GVYHD--------WCEPFSTYP----R 285 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i-~eRGli------g~~~~--------w~~~f~typ----r 285 (378)
..||+-|||.|--+..|.+++- +|+-.|-+ .-++-. -++++- +.+.. +|--|=..+ .
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 4699999999999999999986 77777765 444433 456651 11111 122221222 3
Q ss_pred ccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEe--C--------CH--HHHHHHHHHHhcCCceEEE
Q 017068 286 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR--D--------SP--EVIDKVSRIANTVRWTAAV 353 (378)
Q Consensus 286 tyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~--d--------~~--~~~~~~~~~~~~l~W~~~~ 353 (378)
.||+|.=-.+|+.+. +..| ..+.-=|-++|+|||.+++- + +. -.-++|+++.. -.|++..
T Consensus 116 ~fD~iyDr~~l~Alp----p~~R---~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 116 KFDLIYDRTFLCALP----PEMR---ERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp SEEEEEECSSTTTS-----GGGH---HHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEE
T ss_pred CceEEEEecccccCC----HHHH---HHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEE
Confidence 588888777777664 1122 36777789999999994332 1 11 14566777776 7788765
No 398
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=47.63 E-value=27 Score=35.96 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=46.2
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCc
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 79 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG 79 (378)
.|+++++. +..++.|+++ ++. +.+..+|+..+....+.||+|...- ...+. .++....+.+++||
T Consensus 83 ~V~a~Din-----~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP----~Gs~~-~~l~~al~~~~~~g 152 (382)
T PRK04338 83 KVTLNDIN-----PDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP----FGSPA-PFLDSAIRSVKRGG 152 (382)
T ss_pred EEEEEeCC-----HHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----CCCcH-HHHHHHHHHhcCCC
Confidence 35555555 5666666653 444 3466677755422146799998632 22333 77788788899999
Q ss_pred EEEEEcC
Q 017068 80 YLVISGP 86 (378)
Q Consensus 80 ~lvis~p 86 (378)
.+.+|..
T Consensus 153 ilyvSAt 159 (382)
T PRK04338 153 LLCVTAT 159 (382)
T ss_pred EEEEEec
Confidence 9999854
No 399
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=47.40 E-value=1.2e+02 Score=29.66 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=45.2
Q ss_pred CCCeEEEecCCCCChHHHHHH----HHHcCCCeEEEEcccCCCCCC---CCceeEEEecCccccccCCh-HHHHHHHhhc
Q 017068 3 SENILTLSFAPRDSHKAQIQF----ALERGIPAFVAMLGTRRLPFP---AFSFDIVHCSRCLIPFTAYN-ATYLIEVDRL 74 (378)
Q Consensus 3 ~~~v~~ms~ap~D~se~~vq~----A~erg~~~~~~v~dae~LPfp---d~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RV 74 (378)
.++|+.++|. +..+++ |++.|+++.....|. +-|+| -+.||++++-= .+.-.. ..++.--...
T Consensus 67 ~~~I~VvDiD-----eRll~fI~~~a~~~gl~i~~~~~Dl-R~~LP~~~~~~fD~f~TDP---PyT~~G~~LFlsRgi~~ 137 (243)
T PF01861_consen 67 PKRITVVDID-----ERLLDFINRVAEEEGLPIEAVHYDL-RDPLPEELRGKFDVFFTDP---PYTPEGLKLFLSRGIEA 137 (243)
T ss_dssp -SEEEEE-S------HHHHHHHHHHHHHHT--EEEE---T-TS---TTTSS-BSEEEE------SSHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcC-----HHHHHHHHHHHHHcCCceEEEEecc-cccCCHHHhcCCCEEEeCC---CCCHHHHHHHHHHHHHH
Confidence 4567777766 566654 566788877777775 44666 48999998742 222222 2455555567
Q ss_pred ccCCc-EEEEEcCCCCCCccchHHHHHHHHHHHhceee
Q 017068 75 LRPGG-YLVISGPPVQWPKQDKEWADLQAVARALCYEL 111 (378)
Q Consensus 75 LkPGG-~lvis~pp~~~~~~~~~w~~l~~l~~~lcw~~ 111 (378)
||.-| ..+++-. ..+..-+.|..+++....|..-.
T Consensus 138 Lk~~g~~gy~~~~--~~~~s~~~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 138 LKGEGCAGYFGFT--HKEASPDKWLEVQRFLLEMGLVI 173 (243)
T ss_dssp B-STT-EEEEEE---TTT--HHHHHHHHHHHHTS--EE
T ss_pred hCCCCceEEEEEe--cCcCcHHHHHHHHHHHHHCCcCH
Confidence 77655 3333322 11112355888888777666433
No 400
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=47.21 E-value=12 Score=38.23 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=62.3
Q ss_pred CeeEEEecCCcceeeeeeccCCC--eeEEEeccCCCCcchHHHHhhccccccccccccCCCCCCccccccccCccccccC
Q 017068 224 AIRNIMDMNAFFGGFAAALTSDP--VWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN 301 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~~~--vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~f~typrtyDliH~~~~~~~~~~ 301 (378)
.+...+|.|+|.|.-...++.+- |=..|+.....-.+-+.+. .|+=|=-+..|-.-| +-|+|-.-|++..|.|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTD 251 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceecccccccCC-CcCeEEEEeecccCCh
Confidence 69999999999999988887532 2123433322112212222 334444455554434 3479999999999972
Q ss_pred CCCCCCCCCccceeeeecccccCCCeEEEeCC
Q 017068 302 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 333 (378)
Q Consensus 302 ~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d~ 333 (378)
+.| ..+|-=.---|.|||.+|+-|.
T Consensus 252 -----edc--vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 -----EDC--VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -----HHH--HHHHHHHHHhCCCCCEEEEEec
Confidence 445 4565555566999999999764
No 401
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=46.73 E-value=5.3 Score=33.90 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=23.6
Q ss_pred EEEecCCcceeeeeeccCCC--eeEEEeccCCCC-cchHHH
Q 017068 227 NIMDMNAFFGGFAAALTSDP--VWVMNVVPARKS-STLSVI 264 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~~--vwvmnv~p~~~~-~~l~~i 264 (378)
+++|+|||.|.++..+.... .-+..|-|.... ..++-.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 58999999999988776432 124455554333 334333
No 402
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=45.75 E-value=9.7 Score=38.37 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=22.2
Q ss_pred CCCeeEEEecCCcceeeeeeccCC-CeeEEEeccCCC
Q 017068 222 TPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARK 257 (378)
Q Consensus 222 ~~~iR~vlDm~ag~g~faa~L~~~-~vwvmnv~p~~~ 257 (378)
.|.-..|||+|||.|+.+..|..+ +-| +++.+|-
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDI 146 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDI 146 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeC
Confidence 344567999999999887766532 334 3455553
No 403
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=45.59 E-value=13 Score=37.00 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=28.2
Q ss_pred EEEecCCcceeeeeeccCC---CeeEEEeccCCCC-cchHHHHhh
Q 017068 227 NIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR 267 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~---~vwvmnv~p~~~~-~~l~~i~eR 267 (378)
+++|.+||.||++.++++. .- .|...|.. ..+..+-+|
T Consensus 22 ~vlD~TlG~GGhS~~il~~~~~~g---~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 22 IYVDGTFGGGGHSRAILERLGPKG---RLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred EEEEeCcCChHHHHHHHHhCCCCC---EEEEEcCCHHHHHHHHHh
Confidence 7999999999999999865 23 45666765 666666544
No 404
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=44.48 E-value=26 Score=33.66 Aligned_cols=112 Identities=13% Similarity=0.276 Sum_probs=68.5
Q ss_pred EEEecCCcceeeeeeccCCCeeEEEeccCCCCcchHHHHhhccccccccccccCCCCC-CccccccccCccccccCCCCC
Q 017068 227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSN 305 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w~~~f~typ-rtyDliH~~~~~~~~~~~~~~ 305 (378)
.+||+||=....+..- .+. .+|++.|-..+-+-|++.-+.- -|.|+=+ ..||+|.|+-++.+.-++.
T Consensus 54 rlLEVGals~~N~~s~--~~~--fdvt~IDLns~~~~I~qqDFm~------rplp~~~~e~FdvIs~SLVLNfVP~p~-- 121 (219)
T PF11968_consen 54 RLLEVGALSTDNACST--SGW--FDVTRIDLNSQHPGILQQDFME------RPLPKNESEKFDVISLSLVLNFVPDPK-- 121 (219)
T ss_pred eEEeecccCCCCcccc--cCc--eeeEEeecCCCCCCceeecccc------CCCCCCcccceeEEEEEEEEeeCCCHH--
Confidence 5899999855433221 121 2467777654444444433321 2344444 5899999998887654211
Q ss_pred CCCCCccceeeeecccccCCCe-----EEEeCC-------H-HHHHHHHHHHhcCCceEEEe
Q 017068 306 KNSCSLVDLMVEMDRMLRPEGT-----VVVRDS-------P-EVIDKVSRIANTVRWTAAVH 354 (378)
Q Consensus 306 ~~~c~~~~~l~EmDRiLRPgG~-----~ii~d~-------~-~~~~~~~~~~~~l~W~~~~~ 354 (378)
.| +..+.=.-+.|||+|. +.|--+ . -..+.+.+|..+|-......
T Consensus 122 -~R---G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 122 -QR---GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred -HH---HHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 12 3567778889999999 544311 1 13457788888998887764
No 405
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=44.47 E-value=32 Score=30.73 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=32.6
Q ss_pred cccccCCCeEEEe------CCHHHHHHHHHHHhcC---CceEEEecCCCCCCCCeEEEEEEe
Q 017068 319 DRMLRPEGTVVVR------DSPEVIDKVSRIANTV---RWTAAVHDKEPGSNGREKILVATK 371 (378)
Q Consensus 319 DRiLRPgG~~ii~------d~~~~~~~~~~~~~~l---~W~~~~~~~~~~~~~~e~~l~~~K 371 (378)
=++|+|||.++|- +..+.-+.|++.+++| .|++..+.--+-......+++.+|
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 3689999999886 2245667777777776 466665544333445666777665
No 406
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=43.78 E-value=7.3 Score=35.84 Aligned_cols=31 Identities=13% Similarity=0.003 Sum_probs=22.4
Q ss_pred eEEEecCCcceeeeeeccCCCeeEEEeccCCCC
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS 258 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~ 258 (378)
..|||+.||+|+||-.++++.-= .|+-++..
T Consensus 51 ~~vLDLfaGsG~lglea~srga~--~v~~vE~~ 81 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDD 81 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCC
Confidence 36999999999999999877531 23444543
No 407
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=42.04 E-value=4.8 Score=36.31 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.8
Q ss_pred ccceeeeecccccCCCeEEEe
Q 017068 311 LVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 311 ~~~~l~EmDRiLRPgG~~ii~ 331 (378)
+..++-|+-|||+|||+++|.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 357899999999999999887
No 408
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=42.01 E-value=70 Score=33.19 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=47.8
Q ss_pred CCCChHHHHHHHHHc----CCC--eEEEEcccCCCCCCCCceeEEEecCcccccc----CCh--H----HHHHHHhhccc
Q 017068 13 PRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT----AYN--A----TYLIEVDRLLR 76 (378)
Q Consensus 13 p~D~se~~vq~A~er----g~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~----~~~--~----~~L~Ev~RVLk 76 (378)
..|+...+|+.|+.+ |+. +.|.++|+..|+=+-+++|+|+|+- ++- +.. + .+.+++.|.++
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP---PYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP---PYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC---CcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 445556788887775 555 6788999888865448999999863 221 111 1 33445667777
Q ss_pred CCcEEEEEcC
Q 017068 77 PGGYLVISGP 86 (378)
Q Consensus 77 PGG~lvis~p 86 (378)
--+.++++++
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 7788998876
No 409
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=41.66 E-value=34 Score=34.62 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=29.0
Q ss_pred cccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCeeEEEe
Q 017068 198 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNV 252 (378)
Q Consensus 198 F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~vwvmnv 252 (378)
|.-.+..-.+-++.=.+.+. .. +. +++|+-||+|.|+-.|.++---|+-|
T Consensus 175 fQvN~~~~~~l~~~~~~~l~--~~-~~--~vlDlycG~G~fsl~la~~~~~V~gv 224 (352)
T PF05958_consen 175 FQVNPEQNEKLYEQALEWLD--LS-KG--DVLDLYCGVGTFSLPLAKKAKKVIGV 224 (352)
T ss_dssp --SBHHHHHHHHHHHHHHCT--T--TT--EEEEES-TTTCCHHHHHCCSSEEEEE
T ss_pred ccCcHHHHHHHHHHHHHHhh--cC-CC--cEEEEeecCCHHHHHHHhhCCeEEEe
Confidence 55555544444433333222 12 23 59999999999999998876655544
No 410
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=41.57 E-value=23 Score=35.64 Aligned_cols=124 Identities=6% Similarity=0.049 Sum_probs=67.7
Q ss_pred CccccccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeecc----C--CCeeEEEeccCCCC-cchHHHHh
Q 017068 194 GYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT----S--DPVWVMNVVPARKS-STLSVIYD 266 (378)
Q Consensus 194 ~~~~F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~----~--~~vwvmnv~p~~~~-~~l~~i~e 266 (378)
.+|-|+--++ ..-.+.|...|...+..+. .++|+|||.|.=...|+ . +++ ..+|.|-+ +.|+...+
T Consensus 50 lpEYYptr~E--~~iL~~~~~~Ia~~i~~~~--~lIELGsG~~~Kt~~LL~aL~~~~~~~---~Y~plDIS~~~L~~a~~ 122 (319)
T TIGR03439 50 SPEYYLTNDE--IEILKKHSSDIAASIPSGS--MLVELGSGNLRKVGILLEALERQKKSV---DYYALDVSRSELQRTLA 122 (319)
T ss_pred CCccCChHHH--HHHHHHHHHHHHHhcCCCC--EEEEECCCchHHHHHHHHHHHhcCCCc---eEEEEECCHHHHHHHHH
Confidence 4455554444 4455556666666666665 69999999988655443 2 344 67999987 77765554
Q ss_pred hcc---------cccccccccc---CCC--CCCccc-cccccCccccccCCCCCCCCCCccceeeeecc-cccCCCeEEE
Q 017068 267 RGL---------IGVYHDWCEP---FST--YPRTYD-LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDR-MLRPEGTVVV 330 (378)
Q Consensus 267 RGl---------ig~~~~w~~~---f~t--yprtyD-liH~~~~~~~~~~~~~~~~~c~~~~~l~EmDR-iLRPgG~~ii 330 (378)
+-- -|+..|.... ++. .+.... ++.-+..|.... .-....+|-++-| .|+|||.++|
T Consensus 123 ~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~-------~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 123 ELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFS-------RPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred hhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCC-------HHHHHHHHHHHHHhhCCCCCEEEE
Confidence 332 1222222111 111 110111 222222222221 1122367889999 9999999999
Q ss_pred e
Q 017068 331 R 331 (378)
Q Consensus 331 ~ 331 (378)
-
T Consensus 196 G 196 (319)
T TIGR03439 196 G 196 (319)
T ss_pred e
Confidence 5
No 411
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=41.44 E-value=29 Score=37.05 Aligned_cols=60 Identities=15% Similarity=0.307 Sum_probs=37.3
Q ss_pred cccccchHHHHH--HHHHHHHHhhhhcC----CCCeeEEEecCCcceeeeeeccC--------CCeeEEEeccC
Q 017068 196 DVFEADSRRWRR--RVAYYKNTLNVKLG----TPAIRNIMDMNAFFGGFAAALTS--------DPVWVMNVVPA 255 (378)
Q Consensus 196 ~~F~~d~~~w~~--~v~~Y~~~~~~~~~----~~~iR~vlDm~ag~g~faa~L~~--------~~vwvmnv~p~ 255 (378)
+.|..+...|+. ..+.+.+.|...++ -.++..+.|++-|+||||+.+++ +.+++-.+.|.
T Consensus 119 d~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG~sG~gs~lLE~L~DEy~k~~i~~~~v~P~ 192 (493)
T cd06060 119 EVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGFSGVGAKCLEHLQDEYGKASLLFPGLPPV 192 (493)
T ss_pred cccccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEecCCcccchHHHHHHHHHHhcCccceeEEEeCCC
Confidence 345555555544 33344443333222 24688999999999999999862 34566666664
No 412
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=41.28 E-value=20 Score=36.40 Aligned_cols=124 Identities=13% Similarity=0.235 Sum_probs=64.8
Q ss_pred EEEecCCcceeeeeeccCCCeeEEEeccCCCC-cchHHHHh----hcc--cccc----ccccccCCC---C---------
Q 017068 227 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--IGVY----HDWCEPFST---Y--------- 283 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~----~~w~~~f~t---y--------- 283 (378)
.|||++||+|+|+-+|....- .|+-++.. ..++.+-+ .|+ +-.+ .++...+.. +
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred eEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 499999999999998886543 34555544 44544433 233 1111 111110100 0
Q ss_pred CCccccccccCccccccCCCCCCCCCCc-cceeeeecccccCCCeEEEeCCHHHHHH-HHHHHhcCCceEEE---ecCCC
Q 017068 284 PRTYDLIHVSGIESLIKNPGSNKNSCSL-VDLMVEMDRMLRPEGTVVVRDSPEVIDK-VSRIANTVRWTAAV---HDKEP 358 (378)
Q Consensus 284 prtyDliH~~~~~~~~~~~~~~~~~c~~-~~~l~EmDRiLRPgG~~ii~d~~~~~~~-~~~~~~~l~W~~~~---~~~~~ 358 (378)
...||+|-.+-- |-.+ +.++ ..|++|++.++++=+..++.+ ++.+.+ .|++.. .|-=+
T Consensus 286 ~~~~D~v~lDPP------------R~G~~~~~l---~~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~~v~~~DmFP 348 (362)
T PRK05031 286 SYNFSTIFVDPP------------RAGLDDETL---KLVQAYERILYISCNPETLCENLETLSQ--THKVERFALFDQFP 348 (362)
T ss_pred CCCCCEEEECCC------------CCCCcHHHH---HHHHccCCEEEEEeCHHHHHHHHHHHcC--CcEEEEEEEcccCC
Confidence 013677666311 2221 1222 556678999999976665444 666654 577653 34333
Q ss_pred CCCCCeEEEEEE
Q 017068 359 GSNGREKILVAT 370 (378)
Q Consensus 359 ~~~~~e~~l~~~ 370 (378)
.+..=|-|..-.
T Consensus 349 qT~HvE~v~lL~ 360 (362)
T PRK05031 349 YTHHMECGVLLE 360 (362)
T ss_pred CCCcEEEEEEEE
Confidence 333335555443
No 413
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=41.08 E-value=69 Score=33.76 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=38.4
Q ss_pred HHcCC--CeEEEEcccCCCCCCCCceeEEEecCccccccCCh--HHHHHHHhhcccCCcEEE
Q 017068 25 LERGI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLV 82 (378)
Q Consensus 25 ~erg~--~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~lv 82 (378)
++.+. .+.+..+|++....|. .+|+|++-. +=.+.+.+ ...|....|.|||||.++
T Consensus 235 ~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSEl-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 235 NANGWGDKVTVIHGDMREVELPE-KVDIIVSEL-LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHTTTTTTEEEEES-TTTSCHSS--EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HhcCCCCeEEEEeCcccCCCCCC-ceeEEEEec-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 34443 4778889999888876 899998643 33444443 468899999999999886
No 414
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=40.54 E-value=11 Score=34.93 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCCCccccccccCccc-----cccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 282 TYPRTYDLIHVSGIES-----LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 282 typrtyDliH~~~~~~-----~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
.|+.+||.+-|-+.+. .|-+|..+.. -..-|.++-|+|+|||.+++.=
T Consensus 59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~G---dl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIG---DLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred HhhccchhhheechhccccccccCCCCCccc---cHHHHHHHHHhhccCCeEEEEe
Confidence 5889999987766642 2332222211 1245789999999999999984
No 415
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=36.97 E-value=27 Score=36.14 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=51.1
Q ss_pred eEEEecCCcceeeeeeccCCCeeE--EEeccCCCCcch---HHHHhhcccccccccccc-----CCCCC--Ccccccccc
Q 017068 226 RNIMDMNAFFGGFAAALTSDPVWV--MNVVPARKSSTL---SVIYDRGLIGVYHDWCEP-----FSTYP--RTYDLIHVS 293 (378)
Q Consensus 226 R~vlDm~ag~g~faa~L~~~~vwv--mnv~p~~~~~~l---~~i~eRGlig~~~~w~~~-----f~typ--rtyDliH~~ 293 (378)
..+||+|+|-|. +++....+|- =+++...++..| .--+++-..-.-.+|+.. ..+.| -.|+|+-+.
T Consensus 115 qsiLDvG~GPgt--gl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 115 QSILDVGAGPGT--GLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred chhhccCCCCch--hhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 349999999884 4555566662 133334444333 333445555555677654 12222 577776654
Q ss_pred CccccccCCCCCCCCCCccceeeeecc---cccCCCeEEEeC
Q 017068 294 GIESLIKNPGSNKNSCSLVDLMVEMDR---MLRPEGTVVVRD 332 (378)
Q Consensus 294 ~~~~~~~~~~~~~~~c~~~~~l~EmDR---iLRPgG~~ii~d 332 (378)
.-+-.-. .. ..|..-++| +++|||.+||-+
T Consensus 193 ~eLl~d~------~e---k~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 193 DELLPDG------NE---KPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhcccc------Cc---chHHHHHHHHHHhccCCCeEEEEe
Confidence 3332111 11 112223344 689999999965
No 416
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=36.21 E-value=68 Score=30.09 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=39.7
Q ss_pred CeEEEecCCCCChHHHHHHHHHcCCC--eEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEE
Q 017068 5 NILTLSFAPRDSHKAQIQFALERGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV 82 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg~~--~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lv 82 (378)
.|+|+++-|. .-+-+.+-++..++. +....+|+..++- .+.||-|++.. +.....+|.++.+.+|+||.+-
T Consensus 127 ~V~A~d~Np~-a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 127 RVYAVDLNPD-AVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEEES-HH-HHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred EEEEecCCHH-HHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 4677777762 112222333333444 4456788876655 89999888643 3333378899999999999864
No 417
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=34.93 E-value=23 Score=35.16 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHc----CCC---eEEEEcccCC-CC-C-CCCceeEEEecC---c--cccccCChHHHHHHHhhcccCCc
Q 017068 15 DSHKAQIQFALER----GIP---AFVAMLGTRR-LP-F-PAFSFDIVHCSR---C--LIPFTAYNATYLIEVDRLLRPGG 79 (378)
Q Consensus 15 D~se~~vq~A~er----g~~---~~~~v~dae~-LP-f-pd~SFD~V~cs~---~--l~hw~~~~~~~L~Ev~RVLkPGG 79 (378)
|.|...++.|+++ |+. +.+..+|+.. |. + ..+.||+|++-= . -......-...+..+.++|+|||
T Consensus 153 D~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG 232 (286)
T PF10672_consen 153 DSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGG 232 (286)
T ss_dssp ES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEE
T ss_pred eCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4457888888775 432 4567776532 11 1 246899998631 1 00111111367788999999999
Q ss_pred EEEEEcC
Q 017068 80 YLVISGP 86 (378)
Q Consensus 80 ~lvis~p 86 (378)
.+++++-
T Consensus 233 ~l~~~sc 239 (286)
T PF10672_consen 233 LLLTCSC 239 (286)
T ss_dssp EEEEEE-
T ss_pred EEEEEcC
Confidence 9987754
No 418
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=34.60 E-value=16 Score=35.14 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=24.4
Q ss_pred CeeEEEecCCcceeeeeeccCCCeeEEEeccCCCC
Q 017068 224 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS 258 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~~~vwvmnv~p~~~~ 258 (378)
.=.+|+|+|+|.|.|..+|++..- +|...+..
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d 61 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGK---RVIAVEID 61 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSS---EEEEEESS
T ss_pred CCCEEEEeCCCCccchhhHhcccC---cceeecCc
Confidence 567999999999999999987663 44444433
No 419
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=34.42 E-value=88 Score=30.65 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHcCCCeEEEEc--ccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 15 DSHKAQIQFALERGIPAFVAML--GTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 15 D~se~~vq~A~erg~~~~~~v~--dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
|.++..+++|++.|....+... +..++.-..+.||+|+-.-. .. ..+.+..+.|||||.+++.+.
T Consensus 201 ~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G------~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 201 DVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG------HP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred eCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC------CH-HHHHHHHHHhhcCCEEEEEcc
Confidence 3445667777777654322110 11111111234888875322 12 578899999999999998764
No 420
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=34.22 E-value=37 Score=32.79 Aligned_cols=93 Identities=16% Similarity=0.277 Sum_probs=61.1
Q ss_pred EEEecCCcceeeeeeccC-----CCeeEEEeccCCCCcchHHHHhhc-cccccccccccCCCCC---CccccccccCccc
Q 017068 227 NIMDMNAFFGGFAAALTS-----DPVWVMNVVPARKSSTLSVIYDRG-LIGVYHDWCEPFSTYP---RTYDLIHVSGIES 297 (378)
Q Consensus 227 ~vlDm~ag~g~faa~L~~-----~~vwvmnv~p~~~~~~l~~i~eRG-lig~~~~w~~~f~typ---rtyDliH~~~~~~ 297 (378)
.||-+||.+|....++.+ -.|..+-+.|....+-+.++-.|- +|.++.|=+.|. .|. -..|+|-+
T Consensus 76 kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~-~Y~~lv~~VDvI~~----- 149 (229)
T PF01269_consen 76 KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPE-KYRMLVEMVDVIFQ----- 149 (229)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGG-GGTTTS--EEEEEE-----
T ss_pred EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChH-HhhcccccccEEEe-----
Confidence 699999999998888852 346666777766667777777764 477888766542 122 23444444
Q ss_pred cccCCCCCCCCCCccceeeeecccccCCCeEEEe
Q 017068 298 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 331 (378)
Q Consensus 298 ~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~ 331 (378)
... ..-....+++=++.-|++||+++|.
T Consensus 150 DVa------Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 150 DVA------QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp E-S------STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCC------ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 332 2223456777888999999999986
No 421
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=33.99 E-value=39 Score=37.55 Aligned_cols=141 Identities=18% Similarity=0.111 Sum_probs=76.5
Q ss_pred CeeEEEecCCcceeeeeeccCCC---eeEEE------eccCCCC-cchHHHHhhcc------cccccccccc--C-----
Q 017068 224 AIRNIMDMNAFFGGFAAALTSDP---VWVMN------VVPARKS-STLSVIYDRGL------IGVYHDWCEP--F----- 280 (378)
Q Consensus 224 ~iR~vlDm~ag~g~faa~L~~~~---vwvmn------v~p~~~~-~~l~~i~eRGl------ig~~~~w~~~--f----- 280 (378)
.+|.+|-.|=|+||.+|+|+... .-+.| =....++ ..-+-++..+- |....-|.+| +
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~T 401 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPET 401 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCccH
Confidence 57999999999999999997332 12222 1111111 11122222221 5555557765 1
Q ss_pred --------CCCCCccccccccCccccccCCCCCCCCCCcc-ceeeeecccccCCCeEEEeC--------CHHHHHHHHHH
Q 017068 281 --------STYPRTYDLIHVSGIESLIKNPGSNKNSCSLV-DLMVEMDRMLRPEGTVVVRD--------SPEVIDKVSRI 343 (378)
Q Consensus 281 --------~typrtyDliH~~~~~~~~~~~~~~~~~c~~~-~~l~EmDRiLRPgG~~ii~d--------~~~~~~~~~~~ 343 (378)
-....++|||-|+--...-. -.-.|+ .+.--+.+||.++|.+|+-- +..++..+-.+
T Consensus 402 W~YF~~l~~~~~~~idLiv~DmEV~d~~------~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~ 475 (675)
T PF14314_consen 402 WKYFVSLKKQHNLSIDLIVMDMEVRDDS------IIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRY 475 (675)
T ss_pred HHHHHHHHhhcCCcccEEEEeceecChH------HHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhh
Confidence 12345667766642211000 000112 22223458999999999973 23466666666
Q ss_pred HhcCCceEEEecCCCCCCCCeEEEEEEecC
Q 017068 344 ANTVRWTAAVHDKEPGSNGREKILVATKSL 373 (378)
Q Consensus 344 ~~~l~W~~~~~~~~~~~~~~e~~l~~~K~~ 373 (378)
.++...-..-. ..++..|.+++++|..
T Consensus 476 F~~V~l~qT~~---SSs~TSEVYlv~~~~~ 502 (675)
T PF14314_consen 476 FKSVELVQTQF---SSSFTSEVYLVFQKLK 502 (675)
T ss_pred cCceEEEECCC---CCCCceEEEEEEeccc
Confidence 66555443322 2345789999999863
No 422
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=32.93 E-value=85 Score=29.25 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=41.3
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCC-CCCCCCceeEEEecCccccccCChHHHHHHHhh--ccc
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR--LLR 76 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~-LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~R--VLk 76 (378)
.|+++.+. +..++.|++. ++ .+.+..+|+.. ++...++||+|++.==+ + ......++..+.. +|+
T Consensus 78 ~V~~vE~~-----~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy-~-~g~~~~~l~~l~~~~~l~ 150 (199)
T PRK10909 78 GATLLEMD-----RAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF-R-KGLLEETINLLEDNGWLA 150 (199)
T ss_pred EEEEEECC-----HHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC-C-CChHHHHHHHHHHCCCcC
Confidence 35555554 4556555553 43 35666777543 33345679999975321 1 1111233343333 478
Q ss_pred CCcEEEEEcC
Q 017068 77 PGGYLVISGP 86 (378)
Q Consensus 77 PGG~lvis~p 86 (378)
|+|.++++.+
T Consensus 151 ~~~iv~ve~~ 160 (199)
T PRK10909 151 DEALIYVESE 160 (199)
T ss_pred CCcEEEEEec
Confidence 9999998765
No 423
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=31.63 E-value=83 Score=29.88 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=15.7
Q ss_pred HHHHHHhhcccCCcEEEEEcC
Q 017068 66 TYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 66 ~~L~Ev~RVLkPGG~lvis~p 86 (378)
.++.=..++|+|||.|++...
T Consensus 140 ~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 140 LALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHHHHHeeCCCCeEEEEEE
Confidence 445556679999999998653
No 424
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=31.49 E-value=20 Score=29.00 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=31.3
Q ss_pred eEEEEcccCC-C-CCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068 31 AFVAMLGTRR-L-PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 31 ~~~~v~dae~-L-Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis 84 (378)
+.+..++... + -++++.||+++.-- -|.. +.....++.+.+.|+|||.+++-
T Consensus 51 ~~~~~g~s~~~l~~~~~~~~dli~iDg-~H~~-~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 51 VEFIQGDSPDFLPSLPDGPIDLIFIDG-DHSY-EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEEEES-THHHHHHHHH--EEEEEEES----H-HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEEcCcHHHHHHcCCCCEEEEEECC-CCCH-HHHHHHHHHHHHHcCCCeEEEEe
Confidence 5666665432 2 24478999998642 2222 22237888999999999999874
No 425
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=30.91 E-value=2.1e+02 Score=21.47 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCeEEEEcccCCCCCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEE
Q 017068 18 KAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 18 e~~vq~A~erg~~~~~~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis 84 (378)
.+.-++-.++|+++.-.....+.|+-++.++ +++... ..+.+ . .-++++.+.+..||.+++.
T Consensus 8 ~a~~~~L~~~g~~v~~~~~~~~~l~~~~~tl-l~i~~~--~~~~~-~-~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 8 YALYQLLEEQGVKVERWRKPYEALEADDGTL-LVIGPD--LRLSE-P-EEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHCCCeeEEecccHHHhCCCCCEE-EEEeCC--CCCCc-h-HHHHHHHHHHHcCCEEEEe
Confidence 4455666677877653322344566556555 444443 23333 2 4567888888899999985
No 426
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=29.84 E-value=1e+02 Score=27.84 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=31.8
Q ss_pred HcCCCeE-EEEcccCCC--CCCCCceeEEEecCccccccCChHHHHHH--HhhcccCCcEEEEEcC
Q 017068 26 ERGIPAF-VAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAYNATYLIE--VDRLLRPGGYLVISGP 86 (378)
Q Consensus 26 erg~~~~-~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~~~~~~~L~E--v~RVLkPGG~lvis~p 86 (378)
.||-++. ....+.+.+ +.+-...|+++|..- .++.. ..+-|||||++++...
T Consensus 42 ~rGg~~~~~vris~~~i~~~s~~~~~D~lva~~~---------~~~~~~~~~~~l~~gg~ii~d~~ 98 (177)
T TIGR02175 42 RRGAPVRAFLRISDRPIRVHSQIYEPDYVVVLDP---------TLLKTVNVTAGLKEDGILIVNTK 98 (177)
T ss_pred hcCCcEEEEEEEcCccccCCCccCCCCEEEEcCH---------HHhCccchhhCcCCCeEEEEECC
Confidence 3444433 233344555 566778999987431 33432 5567999999998653
No 427
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=29.01 E-value=1.2e+02 Score=24.88 Aligned_cols=64 Identities=23% Similarity=0.313 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHcCCCeEEEEccc---CCC--CCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 16 SHKAQIQFALERGIPAFVAMLGT---RRL--PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 16 ~se~~vq~A~erg~~~~~~v~da---e~L--Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.++..++.|++.|....+..-+. +++ .++.+.+|+|+-.-. .+ ..+.+...+|+|||.+++.+-
T Consensus 22 ~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~~-~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 22 RSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------SG-DTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp SSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------SH-HHHHHHHHHEEEEEEEEEESS
T ss_pred CCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC------cH-HHHHHHHHHhccCCEEEEEEc
Confidence 34677888988884433221111 011 134468999974321 23 889999999999999998765
No 428
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=28.57 E-value=1.3e+02 Score=28.65 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=26.4
Q ss_pred CCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 44 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 44 pd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
+.+.+|+|+.... .. ..+.++.|.|++||.++..+.
T Consensus 229 ~~~~~D~vid~~g------~~-~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 229 LGGGFDVIFDFVG------TQ-PTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred cCCCceEEEECCC------CH-HHHHHHHHHhhcCCEEEEECC
Confidence 3567898875321 12 678999999999999997653
No 429
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.32 E-value=88 Score=29.73 Aligned_cols=139 Identities=19% Similarity=0.298 Sum_probs=70.7
Q ss_pred eeEEEecCCcceeeeeec---cCCC--eeEEEeccCCCCcchHHHHhhccc---cccccccccCCCCCCccccccccCc-
Q 017068 225 IRNIMDMNAFFGGFAAAL---TSDP--VWVMNVVPARKSSTLSVIYDRGLI---GVYHDWCEPFSTYPRTYDLIHVSGI- 295 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L---~~~~--vwvmnv~p~~~~~~l~~i~eRGli---g~~~~w~~~f~typrtyDliH~~~~- 295 (378)
--.|+|+||--|||.=.+ .... |...-+.|.+....+.++ +|=| .+.-.-.+.++. ...|++=++.-
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i--q~d~~~~~~~~~l~~~l~~--~~~DvV~sD~ap 121 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL--QGDITDEDTLEKLLEALGG--APVDVVLSDMAP 121 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE--eeeccCccHHHHHHHHcCC--CCcceEEecCCC
Confidence 356999999999996444 3333 566666777655322211 1110 111122222332 12455543311
Q ss_pred -cccccCCCCCCCCCCccceeeeec-ccccCCCeEEEe-----CCHHHHHHHHHHHhcCCceEEEecCCCCCCCCeEEEE
Q 017068 296 -ESLIKNPGSNKNSCSLVDLMVEMD-RMLRPEGTVVVR-----DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILV 368 (378)
Q Consensus 296 -~~~~~~~~~~~~~c~~~~~l~EmD-RiLRPgG~~ii~-----d~~~~~~~~~~~~~~l~W~~~~~~~~~~~~~~e~~l~ 368 (378)
.+...+-+. ...-.+..+.+||= ++|+|||-|++- +..+.+..++++.+.++=..-...+. .+.|-+++
T Consensus 122 ~~~g~~~~Dh-~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~---~S~E~y~v 197 (205)
T COG0293 122 NTSGNRSVDH-ARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRK---RSREIYLV 197 (205)
T ss_pred CcCCCccccH-HHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccC---CCceEEEE
Confidence 111000000 00011234555654 599999999986 34567777777776665333322222 24688888
Q ss_pred EEe
Q 017068 369 ATK 371 (378)
Q Consensus 369 ~~K 371 (378)
|.+
T Consensus 198 ~~~ 200 (205)
T COG0293 198 AKG 200 (205)
T ss_pred Eec
Confidence 865
No 430
>PRK11524 putative methyltransferase; Provisional
Probab=28.14 E-value=29 Score=33.77 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=21.3
Q ss_pred cceeeeecccccCCCeEEEeCCHHHHH
Q 017068 312 VDLMVEMDRMLRPEGTVVVRDSPEVID 338 (378)
Q Consensus 312 ~~~l~EmDRiLRPgG~~ii~d~~~~~~ 338 (378)
..+|-|+-|+|+|||.+++.-....+.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~~~~~~~~ 86 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIMNSTENMP 86 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEEcCchhhh
Confidence 468899999999999999875544333
No 431
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=28.08 E-value=1.5e+02 Score=30.25 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=43.8
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CC-CeEEEEcccCCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 78 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~-~~~~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG 78 (378)
.|+++++. +.+++.|+++ ++ .+.+..+|++... -..+.||+|++.= +...-...++..+. -++|+
T Consensus 257 ~v~~vE~~-----~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP---Pr~G~~~~~l~~l~-~~~p~ 327 (374)
T TIGR02085 257 QLTGIEIE-----SEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP---PRRGIGKELCDYLS-QMAPK 327 (374)
T ss_pred eEEEEECC-----HHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC---CCCCCcHHHHHHHH-hcCCC
Confidence 45566655 5667766654 44 4667788875432 1224699998752 11111224545554 47999
Q ss_pred cEEEEEcCC
Q 017068 79 GYLVISGPP 87 (378)
Q Consensus 79 G~lvis~pp 87 (378)
+.+++|-.|
T Consensus 328 ~ivyvsc~p 336 (374)
T TIGR02085 328 FILYSSCNA 336 (374)
T ss_pred eEEEEEeCH
Confidence 999998654
No 432
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=27.99 E-value=79 Score=30.28 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=32.1
Q ss_pred CeEEEecCCCCChHHHHHHHHHcC---CCeEEEEcccCCCCCCCCceeEEEecCc
Q 017068 5 NILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFSFDIVHCSRC 56 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg---~~~~~~v~dae~LPfpd~SFD~V~cs~~ 56 (378)
.|+++++. +.+++.++++. ..+.+..+|+.++++++ ||.|+++.-
T Consensus 53 ~v~~vEid-----~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~--~d~Vv~NlP 100 (258)
T PRK14896 53 KVYAIELD-----PRLAEFLRDDEIAAGNVEIIEGDALKVDLPE--FNKVVSNLP 100 (258)
T ss_pred EEEEEECC-----HHHHHHHHHHhccCCCEEEEEeccccCCchh--ceEEEEcCC
Confidence 35555555 57888887752 23667888998888864 899998754
No 433
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=27.76 E-value=90 Score=33.34 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=35.7
Q ss_pred ccCCCCCCCC-ceeEEEecCccccccCCh--HHHHHH-HhhcccCCcEEEEEcC
Q 017068 37 GTRRLPFPAF-SFDIVHCSRCLIPFTAYN--ATYLIE-VDRLLRPGGYLVISGP 86 (378)
Q Consensus 37 dae~LPfpd~-SFD~V~cs~~l~hw~~~~--~~~L~E-v~RVLkPGG~lvis~p 86 (378)
--..+|-+.. .||+|+|++.+++..... ....++ ..+..++||++++-.+
T Consensus 263 ~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 263 HRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred hcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 3467886544 499999999999987754 233333 4567889999998654
No 434
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=27.54 E-value=1.1e+02 Score=31.98 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=36.5
Q ss_pred CCCCCC-CCceeEEEecCccccccCCh--HHHHHHHhhcccCCcEEEEEcCCCCCCccchHHHHHHHH
Q 017068 39 RRLPFP-AFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAV 103 (378)
Q Consensus 39 e~LPfp-d~SFD~V~cs~~l~hw~~~~--~~~L~Ev~RVLkPGG~lvis~pp~~~~~~~~~w~~l~~l 103 (378)
.++|+| ..++++|+...-+.|-.... ...++.+..++.|||.|||..+ +.-.+|+.+.+.
T Consensus 176 dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr-----Gtp~Gf~~I~rA 238 (484)
T COG5459 176 DRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER-----GTPAGFERILRA 238 (484)
T ss_pred hccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC-----CCchhHHHHHHH
Confidence 356665 44566665555454433321 2377888889999999999875 222346665543
No 435
>CHL00125 psaE photosystem I subunit IV; Reviewed
Probab=27.45 E-value=28 Score=26.97 Aligned_cols=11 Identities=36% Similarity=0.350 Sum_probs=9.6
Q ss_pred ccccCCCeEEE
Q 017068 320 RMLRPEGTVVV 330 (378)
Q Consensus 320 RiLRPgG~~ii 330 (378)
|||||+-||.=
T Consensus 9 rIlR~ESYWyn 19 (64)
T CHL00125 9 RILRKESYWYN 19 (64)
T ss_pred EEccccceeec
Confidence 89999999864
No 436
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=27.23 E-value=83 Score=30.42 Aligned_cols=46 Identities=4% Similarity=-0.085 Sum_probs=32.5
Q ss_pred CeEEEecCCCCChHHHHHHHHHcC--CCeEEEEcccCCCCCCCCceeEEEecC
Q 017068 5 NILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSR 55 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~erg--~~~~~~v~dae~LPfpd~SFD~V~cs~ 55 (378)
.|+++++. +.|++.++++. ..+.+..+|+..+++++-.+|.|+++-
T Consensus 66 ~v~avE~d-----~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 66 KVTAVEID-----RDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred cEEEEECC-----HHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeC
Confidence 46666665 57888887753 356788899999988764468887753
No 437
>PRK02749 photosystem I reaction center subunit IV; Provisional
Probab=26.87 E-value=29 Score=27.41 Aligned_cols=11 Identities=45% Similarity=0.597 Sum_probs=9.6
Q ss_pred ccccCCCeEEE
Q 017068 320 RMLRPEGTVVV 330 (378)
Q Consensus 320 RiLRPgG~~ii 330 (378)
|||||+-||.=
T Consensus 10 rIlR~ESYWyn 20 (71)
T PRK02749 10 RILRPESYWYN 20 (71)
T ss_pred EEccccceeec
Confidence 89999999863
No 438
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=26.70 E-value=37 Score=30.26 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=22.7
Q ss_pred CceeEEEecCccccccCC----h-------HHHHHHHhhcccCCcEEEEEcC
Q 017068 46 FSFDIVHCSRCLIPFTAY----N-------ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 46 ~SFD~V~cs~~l~hw~~~----~-------~~~L~Ev~RVLkPGG~lvis~p 86 (378)
+.||+|+|--+ .+.... . ...+.-+...|||||.|++-..
T Consensus 90 ~~~dlv~~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 90 EKFDLVLSDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp CSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cCcceeccccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 79999998652 122111 1 1344445577999999998653
No 439
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=26.64 E-value=74 Score=32.72 Aligned_cols=72 Identities=10% Similarity=0.221 Sum_probs=46.0
Q ss_pred CeEEEecCCCCChHHHHHHHHHc----CCC-eEEEEcccCCCC-CCCCceeEEEecCccccccCChHHHHHHHhhcccCC
Q 017068 5 NILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 78 (378)
Q Consensus 5 ~v~~ms~ap~D~se~~vq~A~er----g~~-~~~~v~dae~LP-fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPG 78 (378)
.|++.++.| ..++.++++ ++. +.+...|+..+- ...+.||+|..- ++..+. ..+..+.+.+++|
T Consensus 71 ~Vv~nD~n~-----~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD----PfGs~~-~fld~al~~~~~~ 140 (374)
T TIGR00308 71 EVFANDINP-----KAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID----PFGTPA-PFVDSAIQASAER 140 (374)
T ss_pred EEEEEeCCH-----HHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC----CCCCcH-HHHHHHHHhcccC
Confidence 356666654 556665553 333 455556664432 224679999863 223344 8899999999999
Q ss_pred cEEEEEcC
Q 017068 79 GYLVISGP 86 (378)
Q Consensus 79 G~lvis~p 86 (378)
|.+.++..
T Consensus 141 glL~vTaT 148 (374)
T TIGR00308 141 GLLLVTAT 148 (374)
T ss_pred CEEEEEec
Confidence 99999843
No 440
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.85 E-value=27 Score=33.33 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=19.3
Q ss_pred eecccccCCCeEEEe--------CCHHHHHHHHHHHhcC
Q 017068 317 EMDRMLRPEGTVVVR--------DSPEVIDKVSRIANTV 347 (378)
Q Consensus 317 EmDRiLRPgG~~ii~--------d~~~~~~~~~~~~~~l 347 (378)
+||||||||....=- |+.-.++.|++.++.+
T Consensus 39 qIeRllrpgstyfnLNpfeVLqIdpev~~edikkryRkl 77 (250)
T KOG1150|consen 39 QIERLLRPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKL 77 (250)
T ss_pred HHHHHhcCCccccccChHHHHhcCCCCCHHHHHHHHHhh
Confidence 799999999543322 2222456666666655
No 441
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=25.22 E-value=62 Score=32.29 Aligned_cols=56 Identities=30% Similarity=0.536 Sum_probs=41.3
Q ss_pred CCCCccccccccCccccccCCCCCCCCCCccceee-eecccccCCCeEEEeCC-----------HHHHHHHHHHHhcCCc
Q 017068 282 TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMV-EMDRMLRPEGTVVVRDS-----------PEVIDKVSRIANTVRW 349 (378)
Q Consensus 282 typrtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~-EmDRiLRPgG~~ii~d~-----------~~~~~~~~~~~~~l~W 349 (378)
-|-.-||+|..+. ++...|- |+.++++|+|.+|+--. .+..++|.++|+.--|
T Consensus 218 ky~~~Fd~ifvs~---------------s~vh~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~ 282 (289)
T PF14740_consen 218 KYQNFFDLIFVSC---------------SMVHFLKPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGF 282 (289)
T ss_pred hhcCCCCEEEEhh---------------hhHhhcchHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCC
Confidence 4667899988753 3334444 68999999999999742 3578899999998877
Q ss_pred eEE
Q 017068 350 TAA 352 (378)
Q Consensus 350 ~~~ 352 (378)
+-.
T Consensus 283 ~p~ 285 (289)
T PF14740_consen 283 KPV 285 (289)
T ss_pred ccc
Confidence 643
No 442
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=25.01 E-value=1.4e+02 Score=26.42 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=28.2
Q ss_pred CCCCCC-CceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 40 RLPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 40 ~LPfpd-~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
..+.+. +.+|++++.. + ..+.....-|||||++++...
T Consensus 49 ~~~~~~~~~~Dilv~l~--------~-~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 49 IIPSPPVGEADILVALD--------P-EALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp -SSSS-TSSESEEEESS--------H-HHHHHCGTTCETTEEEEEETT
T ss_pred CccCcccCCCCEEEEcC--------H-HHHHHHhcCcCcCeEEEEECC
Confidence 445444 8999999842 2 566688888999999999765
No 443
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=24.75 E-value=18 Score=38.30 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=40.2
Q ss_pred eeEEEecCCcceeeeeeccCCC-------eeEEEeccCCCC-cchHHHHhh----ccc--ccc-cc-ccccC---CCCCC
Q 017068 225 IRNIMDMNAFFGGFAAALTSDP-------VWVMNVVPARKS-STLSVIYDR----GLI--GVY-HD-WCEPF---STYPR 285 (378)
Q Consensus 225 iR~vlDm~ag~g~faa~L~~~~-------vwvmnv~p~~~~-~~l~~i~eR----Gli--g~~-~~-w~~~f---~typr 285 (378)
..+|+|-+||+|+|.++++++- -.-.++.-.|-. ..+..+..+ +-+ -+. .| -|..+ ..+..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 4579999999999998886421 122455555543 333322221 211 111 11 11111 22345
Q ss_pred ccccccccCcccccc
Q 017068 286 TYDLIHVSGIESLIK 300 (378)
Q Consensus 286 tyDliH~~~~~~~~~ 300 (378)
.||+|-+.--|...+
T Consensus 112 ~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 112 LFDIVITNPPYGRLK 126 (524)
T ss_pred cccEEEeCCCccccC
Confidence 799999887766543
No 444
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=24.05 E-value=2e+02 Score=28.99 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=43.1
Q ss_pred CCChHHHHHHHHHc----CCCeEEEE------cc-cCCCCCCCCceeEEEecCccccccCCh------------------
Q 017068 14 RDSHKAQIQFALER----GIPAFVAM------LG-TRRLPFPAFSFDIVHCSRCLIPFTAYN------------------ 64 (378)
Q Consensus 14 ~D~se~~vq~A~er----g~~~~~~v------~d-ae~LPfpd~SFD~V~cs~~l~hw~~~~------------------ 64 (378)
.|.|++.+..|.|+ ++...+.+ .+ ....|.+++..|+++|+-=.+.=.|..
T Consensus 178 iD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg 257 (328)
T KOG2904|consen 178 IDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGG 257 (328)
T ss_pred EeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccc
Confidence 35557888888875 22222211 22 234556789999999873211100000
Q ss_pred -------HHHHHHHhhcccCCcEEEEEcC
Q 017068 65 -------ATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 65 -------~~~L~Ev~RVLkPGG~lvis~p 86 (378)
-.+..-+-|.|+|||.+.+..-
T Consensus 258 ~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 258 LEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 0345567899999999998754
No 445
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=24.02 E-value=31 Score=33.60 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=49.9
Q ss_pred cCCCCeeEEEecCCcceeeeeeccC---------CCeeEEEeccCCCC-cchHHHHh----hccccc-c-ccccccCCCC
Q 017068 220 LGTPAIRNIMDMNAFFGGFAAALTS---------DPVWVMNVVPARKS-STLSVIYD----RGLIGV-Y-HDWCEPFSTY 283 (378)
Q Consensus 220 ~~~~~iR~vlDm~ag~g~faa~L~~---------~~vwvmnv~p~~~~-~~l~~i~e----RGlig~-~-~~w~~~f~ty 283 (378)
+....-..|+|-.||+|+|-++... ... ++.-.|-. .++.++.- +|+-.. . -.+...|...
T Consensus 42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~---~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~ 118 (311)
T PF02384_consen 42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEI---NIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND 118 (311)
T ss_dssp HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCE---EEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH
T ss_pred hhccccceeechhhhHHHHHHHHHHhhcccccccccc---eeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 3444456799999999999877654 233 44433432 33333222 333111 0 0122223221
Q ss_pred ----CCccccccccCccccc--cCCCCCCCC---------CCcc-ceeeeecccccCCCeEEE
Q 017068 284 ----PRTYDLIHVSGIESLI--KNPGSNKNS---------CSLV-DLMVEMDRMLRPEGTVVV 330 (378)
Q Consensus 284 ----prtyDliH~~~~~~~~--~~~~~~~~~---------c~~~-~~l~EmDRiLRPgG~~ii 330 (378)
.+.||+|-+.--|... .+.....+. -+.+ ..+.-+-+.|++||.+++
T Consensus 119 ~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 119 KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 3579999888777655 211111100 0011 233447789999997543
No 446
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=23.61 E-value=2.1e+02 Score=27.64 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=48.1
Q ss_pred eEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCC----CCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEE
Q 017068 6 ILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP----FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL 81 (378)
Q Consensus 6 v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LP----fpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~l 81 (378)
|.++-|||+-..+ .+..|.+|. ++.=...|+ +.| +==+..|+|++- +.+ ++....+...+...||+||++
T Consensus 103 iYaVEfs~R~~re-Ll~~a~~R~-Ni~PIL~DA-~~P~~Y~~~Ve~VDviy~D-VAQ--p~Qa~I~~~Na~~FLk~~G~~ 176 (231)
T COG1889 103 IYAVEFSPRPMRE-LLDVAEKRP-NIIPILEDA-RKPEKYRHLVEKVDVIYQD-VAQ--PNQAEILADNAEFFLKKGGYV 176 (231)
T ss_pred EEEEEecchhHHH-HHHHHHhCC-Cceeeeccc-CCcHHhhhhcccccEEEEe-cCC--chHHHHHHHHHHHhcccCCeE
Confidence 7889999986555 478888873 222233454 223 123458988763 221 233347788999999999988
Q ss_pred EEEcC
Q 017068 82 VISGP 86 (378)
Q Consensus 82 vis~p 86 (378)
+++..
T Consensus 177 ~i~iK 181 (231)
T COG1889 177 VIAIK 181 (231)
T ss_pred EEEEE
Confidence 88644
No 447
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=23.38 E-value=1.9e+02 Score=28.88 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.6
Q ss_pred HHHHHHhhcccCCcEEEEEcC
Q 017068 66 TYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 66 ~~L~Ev~RVLkPGG~lvis~p 86 (378)
..+.++.|.|+|||.+++.+.
T Consensus 287 ~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 287 DALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred HHHHHHHHHhccCCEEEEEcC
Confidence 688999999999999998754
No 448
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=23.19 E-value=3.8e+02 Score=26.02 Aligned_cols=70 Identities=23% Similarity=0.185 Sum_probs=40.8
Q ss_pred CCCChHHHHHHHHHc--CCCe-E---E-EEcccCCCCCCCCceeEEEecCccccccCCh-HHHHHHHhhcccCCcEEEEE
Q 017068 13 PRDSHKAQIQFALER--GIPA-F---V-AMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVIS 84 (378)
Q Consensus 13 p~D~se~~vq~A~er--g~~~-~---~-~v~dae~LPfpd~SFD~V~cs~~l~hw~~~~-~~~L~Ev~RVLkPGG~lvis 84 (378)
..|.|+.|++.|+.- ..+. . . ...-.+.++++.. |+|+++++|-...+.. ..+++.+.+.+. +++++.
T Consensus 63 ~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--DLvi~s~~L~EL~~~~r~~lv~~LW~~~~--~~LVlV 138 (274)
T PF09243_consen 63 CVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPD--DLVIASYVLNELPSAARAELVRSLWNKTA--PVLVLV 138 (274)
T ss_pred eecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCC--cEEEEehhhhcCCchHHHHHHHHHHHhcc--CcEEEE
Confidence 456778888887763 1111 1 0 0011223455444 9999999999887732 244445545444 488887
Q ss_pred cC
Q 017068 85 GP 86 (378)
Q Consensus 85 ~p 86 (378)
.|
T Consensus 139 Ep 140 (274)
T PF09243_consen 139 EP 140 (274)
T ss_pred cC
Confidence 65
No 449
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=22.91 E-value=2.1e+02 Score=28.00 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=38.0
Q ss_pred cCCCCChHHHHHHHHHcCCCeEEEEcccCCC--CCCCCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 11 FAPRDSHKAQIQFALERGIPAFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 11 ~ap~D~se~~vq~A~erg~~~~~~v~dae~L--Pfpd~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
+...+.++...++|++.|... .....+.+ --..+.||+|+-.-. .. ..+.+..++||+||.+++.+.
T Consensus 202 ~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g------~~-~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 202 LNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG------VP-PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred EecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC------CH-HHHHHHHHHccCCcEEEEEec
Confidence 333344566677777766532 11111110 001245888875322 12 578999999999999987654
No 450
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=22.77 E-value=12 Score=36.60 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=28.8
Q ss_pred CCccccccccCccccccCCCCCCCCCCccceeeeecccccCCCeEEEeC
Q 017068 284 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 332 (378)
Q Consensus 284 prtyDliH~~~~~~~~~~~~~~~~~c~~~~~l~EmDRiLRPgG~~ii~d 332 (378)
|+.||.|-+..|+..-- .+.-.....|--+=+.|||||++|+-.
T Consensus 156 p~~~D~v~s~fcLE~a~-----~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 156 PPKFDCVISSFCLESAC-----KDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp -SSEEEEEEESSHHHH------SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccchhhhhhhHHHHHHc-----CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 56799988877765321 122222355666778999999999973
No 451
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=22.03 E-value=92 Score=31.09 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=40.3
Q ss_pred CCceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC-C-CCCC-ccchH-HHHHHHHHHHhceeee
Q 017068 45 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP-P-VQWP-KQDKE-WADLQAVARALCYELI 112 (378)
Q Consensus 45 d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p-p-~~~~-~~~~~-w~~l~~l~~~lcw~~~ 112 (378)
.+-||+|+.+....|...+ |+.++++|||.+++-+. . .... +..+. -+.+.++|..-.|+..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred cCCCCEEEEhhhhHhhcch------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 6789999988777775443 48889999999999664 1 1222 11122 2347777776666554
No 452
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=21.82 E-value=1.1e+02 Score=32.48 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=48.2
Q ss_pred cCCCCChHHHHHHHHHc--CCCeEEEEcccCC-C--CC---CCCceeEEEecCccccccCChHHHHH---HHhhcccCCc
Q 017068 11 FAPRDSHKAQIQFALER--GIPAFVAMLGTRR-L--PF---PAFSFDIVHCSRCLIPFTAYNATYLI---EVDRLLRPGG 79 (378)
Q Consensus 11 ~ap~D~se~~vq~A~er--g~~~~~~v~dae~-L--Pf---pd~SFD~V~cs~~l~hw~~~~~~~L~---Ev~RVLkPGG 79 (378)
-||.|..+..++.|++. |+.+.+.++|... | -| -+-..|+.+.--.-.+-..+..++++ -+.|+|.|||
T Consensus 202 aApldE~~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGgPFN~a~dRl~aFakaVa~sRIL~pGk 281 (505)
T PF10113_consen 202 AAPLDEMEEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGGPFNRAKDRLKAFAKAVAASRILVPGK 281 (505)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCCCcccchhHHHHHHHHHHHheeeecCc
Confidence 48889999999999985 5677888887532 1 01 14456766654433333333334444 4689999999
Q ss_pred EEEEEc
Q 017068 80 YLVISG 85 (378)
Q Consensus 80 ~lvis~ 85 (378)
.+.-.+
T Consensus 282 VVaTNG 287 (505)
T PF10113_consen 282 VVATNG 287 (505)
T ss_pred EEecCC
Confidence 887543
No 453
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=21.66 E-value=2.2e+02 Score=25.50 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=26.7
Q ss_pred cccCCCCCCC-CceeEEEecCccccccCChHHHHHHHhhcccCCcEEEEEcC
Q 017068 36 LGTRRLPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 36 ~dae~LPfpd-~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
.+.+....|. ..+|++++.. . ..+.....-|||||++++...
T Consensus 55 is~~~i~s~~~~~~D~lval~--------~-~~~~~~~~~l~~~g~vi~n~~ 97 (177)
T PRK08537 55 ISDEEIDYPKVISPDILVAMS--------Q-EAYDKYLDDLKEGGTVIVDPD 97 (177)
T ss_pred ECCCcccCccCCCCCEEEEeC--------H-HHHHHHHhccCCCeEEEEECC
Confidence 3444443444 5689998732 1 344455677899999998754
No 454
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.09 E-value=6.2e+02 Score=23.64 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCCeEEEecCCCCC--hHHHHHHHHHcCCCeEEE
Q 017068 3 SENILTLSFAPRDS--HKAQIQFALERGIPAFVA 34 (378)
Q Consensus 3 ~~~v~~ms~ap~D~--se~~vq~A~erg~~~~~~ 34 (378)
.+++-++-+.|.|. ....++.++++|+|+.+.
T Consensus 54 ~~~~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 54 SQKPDIIISIPVDPVSTAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred HhCCCEEEEcCCCchhhhHHHHHHHHcCCcEEEe
Confidence 34566666777764 367788899999987654
No 455
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.39 E-value=1.1e+02 Score=32.06 Aligned_cols=135 Identities=14% Similarity=0.190 Sum_probs=67.3
Q ss_pred cccchHHHHHHHHHHHHHhhhhcCCCCeeEEEecCCcceeeeeeccCCCe--eEEEeccCCCCcchHHHHhhcccccccc
Q 017068 198 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPV--WVMNVVPARKSSTLSVIYDRGLIGVYHD 275 (378)
Q Consensus 198 F~~d~~~w~~~v~~Y~~~~~~~~~~~~iR~vlDm~ag~g~faa~L~~~~v--wvmnv~p~~~~~~l~~i~eRGlig~~~~ 275 (378)
|........+-++.=.+. +....--.++|+=||+|.|+-+|.++.- .-|=++|..-.+.-.-+-.-|+-.+...
T Consensus 271 ~Q~N~~~~ekl~~~a~~~----~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~ 346 (432)
T COG2265 271 FQVNPAVAEKLYETALEW----LELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFI 346 (432)
T ss_pred eecCHHHHHHHHHHHHHH----HhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEE
Confidence 444544444443332222 3334456899999999999999996654 3333333222122222333333211111
Q ss_pred c--cccCCC-C--CCccccccccCccccccCCCCCCCCCCcc-ceeeeecccccCCCeEEEeCCHHHHHHHHHHHhcCCc
Q 017068 276 W--CEPFST-Y--PRTYDLIHVSGIESLIKNPGSNKNSCSLV-DLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRW 349 (378)
Q Consensus 276 w--~~~f~t-y--prtyDliH~~~~~~~~~~~~~~~~~c~~~-~~l~EmDRiLRPgG~~ii~d~~~~~~~~~~~~~~l~W 349 (378)
- -|.|.. . .-.+|.|-.+ ..|+.++ .++-++.+ +.|...+++|=+..++-+=-.++.+-..
T Consensus 347 ~~~ae~~~~~~~~~~~~d~VvvD------------PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 347 AGDAEEFTPAWWEGYKPDVVVVD------------PPRAGADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILASTGY 413 (432)
T ss_pred eCCHHHHhhhccccCCCCEEEEC------------CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHhCCe
Confidence 0 111111 1 1245666553 3455555 55544444 3577789999777665554444444333
No 456
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=20.33 E-value=1.9e+02 Score=30.70 Aligned_cols=69 Identities=28% Similarity=0.378 Sum_probs=41.3
Q ss_pred HHHHHcCCCeE-EEEcccCCCC---CCCCceeEEE----ecCcccc-------cc----------CChHHHHHHHhhccc
Q 017068 22 QFALERGIPAF-VAMLGTRRLP---FPAFSFDIVH----CSRCLIP-------FT----------AYNATYLIEVDRLLR 76 (378)
Q Consensus 22 q~A~erg~~~~-~~v~dae~LP---fpd~SFD~V~----cs~~l~h-------w~----------~~~~~~L~Ev~RVLk 76 (378)
+.+.+-|+... ....|...+| |+. +||-|. |+-.-.- |. .-..+.|......+|
T Consensus 284 ~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~ 362 (460)
T KOG1122|consen 284 ANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVK 362 (460)
T ss_pred HHHHHhCCCceEEEccCcccccccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhcc
Confidence 33444566543 4455666655 666 999986 5441100 10 112367777888999
Q ss_pred CCcEEEEEcCCCCCC
Q 017068 77 PGGYLVISGPPVQWP 91 (378)
Q Consensus 77 PGG~lvis~pp~~~~ 91 (378)
|||++|.|+=.+.-.
T Consensus 363 ~GGvLVYSTCSI~~~ 377 (460)
T KOG1122|consen 363 AGGVLVYSTCSITVE 377 (460)
T ss_pred CCcEEEEEeeecchh
Confidence 999999987544433
No 457
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=20.26 E-value=3.4e+02 Score=27.01 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=46.6
Q ss_pred eEEEecCCCCChHHHHHHHHHcCCCeEEEEcccCCCCCC----CCceeEEEecCccccccCChHHHHHHHhhcccCCcEE
Q 017068 6 ILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFP----AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL 81 (378)
Q Consensus 6 v~~ms~ap~D~se~~vq~A~erg~~~~~~v~dae~LPfp----d~SFD~V~cs~~l~hw~~~~~~~L~Ev~RVLkPGG~l 81 (378)
|.|+.|++.- -...+..|++|- +++-.+-|+ +.|+. =.-.|+|++ .+.+ ++....+.....-.||+||-|
T Consensus 184 VYAVEfs~rs-GRdL~nmAkkRt-NiiPIiEDA-rhP~KYRmlVgmVDvIFa-Dvaq--pdq~RivaLNA~~FLk~gGhf 257 (317)
T KOG1596|consen 184 VYAVEFSHRS-GRDLINMAKKRT-NIIPIIEDA-RHPAKYRMLVGMVDVIFA-DVAQ--PDQARIVALNAQYFLKNGGHF 257 (317)
T ss_pred EEEEEecccc-hHHHHHHhhccC-CceeeeccC-CCchheeeeeeeEEEEec-cCCC--chhhhhhhhhhhhhhccCCeE
Confidence 5677777653 345677888872 333334454 33422 346788875 3221 333346677889999999999
Q ss_pred EEEcC
Q 017068 82 VISGP 86 (378)
Q Consensus 82 vis~p 86 (378)
+++..
T Consensus 258 visik 262 (317)
T KOG1596|consen 258 VISIK 262 (317)
T ss_pred EEEEe
Confidence 99865
No 458
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=20.14 E-value=1.5e+02 Score=29.31 Aligned_cols=36 Identities=28% Similarity=0.276 Sum_probs=24.4
Q ss_pred EEecCccccccC--ChHHHHHHHhhcccCCcEEEEEcC
Q 017068 51 VHCSRCLIPFTA--YNATYLIEVDRLLRPGGYLVISGP 86 (378)
Q Consensus 51 V~cs~~l~hw~~--~~~~~L~Ev~RVLkPGG~lvis~p 86 (378)
+....+++|.++ +....++.+...|.||.+|++|..
T Consensus 154 vll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 154 VLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp EEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred eeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 444556666666 336899999999999999999855
No 459
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=20.11 E-value=82 Score=32.63 Aligned_cols=34 Identities=24% Similarity=0.178 Sum_probs=21.3
Q ss_pred CeeEEEecCCccee--eeeecc-CCCeeEEEeccCCCCcchH
Q 017068 224 AIRNIMDMNAFFGG--FAAALT-SDPVWVMNVVPARKSSTLS 262 (378)
Q Consensus 224 ~iR~vlDm~ag~g~--faa~L~-~~~vwvmnv~p~~~~~~l~ 262 (378)
.=|.|+|+|||+|- |=|+.. .+.| -.++++++-|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~v-----YAvEAS~MAq 213 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKV-----YAVEASEMAQ 213 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceE-----EEEehhHHHH
Confidence 45889999999994 334443 5556 4445554443
Done!