Query 017070
Match_columns 378
No_of_seqs 292 out of 1686
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03115 ferredoxin--NADP(+) r 100.0 2.3E-58 4.9E-63 447.2 33.9 362 1-378 1-367 (367)
2 PLN03116 ferredoxin--NADP+ red 100.0 1.5E-52 3.3E-57 401.4 33.6 306 73-378 2-307 (307)
3 cd06208 CYPOR_like_FNR These f 100.0 1.7E-47 3.6E-52 363.4 31.6 285 88-378 1-286 (286)
4 TIGR03224 benzo_boxA benzoyl-C 100.0 6.6E-46 1.4E-50 367.7 31.7 281 82-378 129-411 (411)
5 PRK11872 antC anthranilate dio 100.0 1.3E-45 2.8E-50 358.4 25.0 258 41-353 63-324 (340)
6 PRK07609 CDP-6-deoxy-delta-3,4 100.0 2.1E-45 4.5E-50 357.3 23.8 264 39-362 58-326 (339)
7 cd06182 CYPOR_like NADPH cytoc 100.0 4.5E-42 9.8E-47 322.7 27.6 254 100-378 2-267 (267)
8 PRK05713 hypothetical protein; 100.0 2.3E-42 5E-47 332.0 21.7 248 42-364 56-304 (312)
9 PRK05464 Na(+)-translocating N 100.0 6.4E-42 1.4E-46 340.3 23.4 273 42-353 96-396 (409)
10 TIGR01941 nqrF NADH:ubiquinone 100.0 6.1E-42 1.3E-46 340.1 22.2 273 42-353 92-392 (405)
11 cd06200 SiR_like1 Cytochrome p 100.0 3.1E-40 6.6E-45 306.8 27.1 225 114-378 17-245 (245)
12 cd06201 SiR_like2 Cytochrome p 100.0 5.5E-40 1.2E-44 312.0 27.1 237 94-378 44-289 (289)
13 cd06211 phenol_2-monooxygenase 100.0 6.2E-40 1.3E-44 303.5 21.9 224 93-362 4-232 (238)
14 cd06210 MMO_FAD_NAD_binding Me 100.0 1.7E-39 3.7E-44 300.0 21.3 216 96-353 2-224 (236)
15 cd06189 flavin_oxioreductase N 100.0 1.4E-39 2.9E-44 298.5 20.5 218 98-363 1-219 (224)
16 PRK08051 fre FMN reductase; Va 100.0 1.2E-39 2.7E-44 300.4 20.1 221 95-363 2-224 (232)
17 cd06188 NADH_quinone_reductase 100.0 1.3E-39 2.8E-44 308.9 19.9 236 93-353 7-272 (283)
18 cd06209 BenDO_FAD_NAD Benzoate 100.0 6.8E-39 1.5E-43 294.6 21.8 217 96-362 2-221 (228)
19 cd06212 monooxygenase_like The 100.0 7.9E-39 1.7E-43 294.9 21.6 215 96-353 1-220 (232)
20 cd06213 oxygenase_e_transfer_s 100.0 9.7E-39 2.1E-43 293.4 21.5 212 97-353 2-216 (227)
21 cd06195 FNR1 Ferredoxin-NADP+ 100.0 2.6E-38 5.7E-43 293.1 21.9 237 99-378 1-241 (241)
22 cd06207 CyPoR_like NADPH cytoc 100.0 2.3E-37 5E-42 305.1 27.3 215 149-378 161-382 (382)
23 cd06190 T4MO_e_transfer_like T 100.0 7.7E-38 1.7E-42 288.2 20.5 214 100-353 1-219 (232)
24 PRK10926 ferredoxin-NADP reduc 100.0 2.1E-37 4.6E-42 288.2 23.1 223 94-352 3-228 (248)
25 PRK10684 HCP oxidoreductase, N 100.0 1E-37 2.3E-42 302.3 21.8 218 93-353 7-226 (332)
26 TIGR01931 cysJ sulfite reducta 100.0 1.1E-36 2.4E-41 314.7 30.7 269 90-378 229-597 (597)
27 cd06187 O2ase_reductase_like T 100.0 1.3E-37 2.9E-42 285.0 21.0 212 100-353 1-213 (224)
28 COG2871 NqrF Na+-transporting 100.0 9.6E-38 2.1E-42 281.7 17.2 273 46-357 101-401 (410)
29 cd06206 bifunctional_CYPOR The 100.0 2.4E-36 5.1E-41 298.1 28.4 266 99-378 1-384 (384)
30 cd06215 FNR_iron_sulfur_bindin 100.0 3.1E-37 6.8E-42 283.8 20.3 214 99-352 2-219 (231)
31 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 4.9E-37 1.1E-41 300.1 21.8 224 96-354 2-231 (352)
32 cd06199 SiR Cytochrome p450- l 100.0 4.6E-37 9.9E-42 300.4 21.4 224 125-378 129-360 (360)
33 cd06191 FNR_iron_sulfur_bindin 100.0 3.7E-37 7.9E-42 283.6 19.5 220 99-363 2-226 (231)
34 PRK10953 cysJ sulfite reductas 100.0 6.4E-36 1.4E-40 307.7 30.4 270 89-378 231-600 (600)
35 PRK06214 sulfite reductase; Pr 100.0 1E-35 2.2E-40 300.6 30.6 269 89-378 162-530 (530)
36 cd06194 FNR_N-term_Iron_sulfur 100.0 1.2E-36 2.6E-41 278.4 21.5 215 100-363 1-216 (222)
37 PRK08345 cytochrome-c3 hydroge 100.0 7.5E-37 1.6E-41 290.6 20.6 226 93-367 3-245 (289)
38 cd06217 FNR_iron_sulfur_bindin 100.0 8.1E-37 1.8E-41 281.8 20.1 219 96-353 2-224 (235)
39 cd06204 CYPOR NADPH cytochrome 100.0 1.7E-35 3.6E-40 294.4 30.0 269 94-378 4-416 (416)
40 cd06184 flavohem_like_fad_nad_ 100.0 2.2E-36 4.7E-41 281.2 21.4 219 94-352 5-231 (247)
41 cd06214 PA_degradation_oxidore 100.0 3.2E-36 6.9E-41 278.9 21.8 229 96-364 2-236 (241)
42 cd00322 FNR_like Ferredoxin re 100.0 2.8E-36 6E-41 275.4 20.2 213 102-353 2-214 (223)
43 COG0369 CysJ Sulfite reductase 100.0 1.3E-35 2.8E-40 301.5 27.2 270 90-378 216-587 (587)
44 PRK13289 bifunctional nitric o 100.0 4.6E-36 1E-40 297.9 21.7 225 94-363 153-387 (399)
45 PTZ00274 cytochrome b5 reducta 100.0 1E-35 2.2E-40 285.7 22.8 226 92-348 49-281 (325)
46 cd06203 methionine_synthase_re 100.0 3E-35 6.6E-40 291.1 25.9 214 149-378 171-398 (398)
47 cd06216 FNR_iron_sulfur_bindin 100.0 1E-35 2.2E-40 276.1 20.9 216 94-354 16-234 (243)
48 cd06221 sulfite_reductase_like 100.0 7.1E-36 1.5E-40 278.8 19.4 219 100-367 1-223 (253)
49 cd06196 FNR_like_1 Ferredoxin 100.0 1.1E-35 2.3E-40 271.4 19.3 213 96-362 1-214 (218)
50 cd06183 cyt_b5_reduct_like Cyt 100.0 6.1E-35 1.3E-39 268.8 22.5 224 99-363 2-231 (234)
51 COG1018 Hmp Flavodoxin reducta 100.0 2.1E-34 4.6E-39 268.8 24.4 214 94-356 4-222 (266)
52 PRK08221 anaerobic sulfite red 100.0 4.8E-35 1E-39 274.6 18.6 215 95-364 7-222 (263)
53 PTZ00319 NADH-cytochrome B5 re 100.0 3.3E-34 7.1E-39 273.7 23.5 246 89-363 27-297 (300)
54 cd06202 Nitric_oxide_synthase 100.0 5.4E-34 1.2E-38 282.8 24.7 218 150-378 175-402 (406)
55 cd06198 FNR_like_3 NAD(P) bind 100.0 7E-34 1.5E-38 259.1 18.5 201 115-364 9-211 (216)
56 cd06218 DHOD_e_trans FAD/NAD b 100.0 6.2E-34 1.3E-38 264.7 18.3 205 100-356 1-206 (246)
57 KOG0534 NADH-cytochrome b-5 re 100.0 3.3E-33 7.1E-38 259.5 22.7 225 92-353 48-277 (286)
58 TIGR02911 sulfite_red_B sulfit 100.0 1.3E-33 2.8E-38 264.6 19.9 214 95-362 5-218 (261)
59 COG0543 UbiB 2-polyprenylpheno 100.0 2.2E-33 4.7E-38 261.5 21.2 205 97-353 9-215 (252)
60 PRK00054 dihydroorotate dehydr 100.0 3.9E-33 8.5E-38 260.0 18.7 203 94-354 3-205 (250)
61 cd06185 PDR_like Phthalate dio 100.0 9.7E-33 2.1E-37 250.6 20.4 195 101-354 1-200 (211)
62 PRK06222 ferredoxin-NADP(+) re 100.0 9.5E-33 2.1E-37 261.5 20.7 202 98-354 2-205 (281)
63 cd06219 DHOD_e_trans_like1 FAD 100.0 4.9E-33 1.1E-37 259.0 17.8 202 98-354 1-204 (248)
64 KOG1158 NADP/FAD dependent oxi 100.0 7.6E-33 1.7E-37 280.9 19.3 220 149-378 419-645 (645)
65 PLN02252 nitrate reductase [NA 100.0 3.1E-32 6.8E-37 289.9 24.6 244 89-362 628-884 (888)
66 cd06220 DHOD_e_trans_like2 FAD 100.0 4.7E-32 1E-36 250.1 18.5 199 99-363 2-200 (233)
67 cd06192 DHOD_e_trans_like FAD/ 100.0 1.3E-31 2.7E-36 248.8 20.1 200 100-353 1-201 (243)
68 COG4097 Predicted ferric reduc 100.0 5.1E-32 1.1E-36 253.1 15.5 210 93-353 213-424 (438)
69 PRK05802 hypothetical protein; 100.0 2E-31 4.4E-36 256.0 20.0 210 92-352 61-276 (320)
70 cd06197 FNR_like_2 FAD/NAD(P) 100.0 3.1E-31 6.8E-36 242.5 18.3 191 102-351 2-211 (220)
71 PTZ00306 NADH-dependent fumara 100.0 1.3E-30 2.9E-35 287.5 22.2 227 91-353 910-1152(1167)
72 KOG1159 NADP-dependent flavopr 100.0 5E-29 1.1E-33 239.7 21.4 262 91-378 192-574 (574)
73 cd06193 siderophore_interactin 100.0 1.7E-29 3.7E-34 233.3 15.5 203 100-352 1-220 (235)
74 PRK12779 putative bifunctional 100.0 6.5E-29 1.4E-33 267.6 21.8 218 94-353 647-870 (944)
75 PRK12778 putative bifunctional 100.0 4.9E-29 1.1E-33 265.6 18.2 202 98-354 2-205 (752)
76 cd06186 NOX_Duox_like_FAD_NADP 100.0 1.5E-27 3.3E-32 216.3 17.2 179 115-351 12-197 (210)
77 PRK12775 putative trifunctiona 99.9 1.3E-26 2.7E-31 251.9 19.3 201 98-354 2-205 (1006)
78 PLN02292 ferric-chelate reduct 99.9 5.8E-24 1.2E-28 220.5 22.0 210 96-343 325-550 (702)
79 PLN02631 ferric-chelate reduct 99.9 6.2E-23 1.4E-27 212.4 19.4 173 97-302 309-491 (699)
80 PLN02844 oxidoreductase/ferric 99.9 5.7E-22 1.2E-26 206.2 21.4 206 99-342 315-538 (722)
81 PF00175 NAD_binding_1: Oxidor 99.8 1.3E-20 2.8E-25 152.8 10.9 109 232-347 1-109 (109)
82 KOG3378 Globins and related he 99.8 2.6E-21 5.6E-26 174.2 5.7 217 94-358 148-374 (385)
83 KOG0039 Ferric reductase, NADH 99.8 5.1E-18 1.1E-22 176.7 20.8 225 96-353 355-632 (646)
84 PF00970 FAD_binding_6: Oxidor 99.7 5.9E-18 1.3E-22 135.0 9.4 96 97-220 1-99 (99)
85 PRK06567 putative bifunctional 99.6 6.4E-15 1.4E-19 156.4 18.2 125 94-253 789-916 (1028)
86 PF08030 NAD_binding_6: Ferric 99.4 8.8E-13 1.9E-17 113.7 8.5 121 228-349 2-155 (156)
87 PF08022 FAD_binding_8: FAD-bi 99.2 1.9E-12 4.2E-17 104.4 -1.5 91 98-217 4-103 (105)
88 COG2375 ViuB Siderophore-inter 99.2 8.4E-09 1.8E-13 95.1 21.4 217 94-362 16-250 (265)
89 PF08021 FAD_binding_9: Sidero 98.6 2E-07 4.2E-12 76.6 8.1 99 99-218 1-117 (117)
90 PF00667 FAD_binding_1: FAD bi 98.2 7.3E-06 1.6E-10 74.9 8.4 50 91-140 4-54 (219)
91 CHL00134 petF ferredoxin; Vali 87.5 0.36 7.8E-06 38.2 1.9 26 44-75 66-91 (99)
92 PF04954 SIP: Siderophore-inte 87.4 2.8 6.2E-05 34.1 7.2 100 228-351 2-101 (119)
93 PLN03136 Ferredoxin; Provision 86.2 0.47 1E-05 40.4 2.0 26 44-75 115-140 (148)
94 TIGR02008 fdx_plant ferredoxin 84.7 0.59 1.3E-05 36.7 1.8 25 45-75 65-89 (97)
95 cd06199 SiR Cytochrome p450- l 83.5 1.8 3.9E-05 42.5 5.0 43 99-141 1-44 (360)
96 PTZ00038 ferredoxin; Provision 79.8 1.1 2.3E-05 39.9 1.7 27 43-75 155-181 (191)
97 PRK10713 2Fe-2S ferredoxin Yfa 78.2 1.5 3.2E-05 33.5 1.9 21 49-75 63-83 (84)
98 cd06202 Nitric_oxide_synthase 77.8 3.4 7.3E-05 41.3 4.8 43 99-141 1-45 (406)
99 COG1465 Predicted alternative 77.0 17 0.00037 34.4 8.7 92 94-217 198-295 (376)
100 PF00677 Lum_binding: Lumazine 73.8 14 0.0003 28.3 6.2 76 96-212 6-83 (85)
101 PRK10684 HCP oxidoreductase, N 62.1 4.1 8.8E-05 39.4 1.4 27 43-75 306-332 (332)
102 cd00207 fer2 2Fe-2S iron-sulfu 58.8 5.6 0.00012 29.7 1.4 25 45-75 60-84 (84)
103 KOG1611 Predicted short chain- 52.8 38 0.00083 31.1 5.9 55 231-297 6-61 (249)
104 PRK09783 copper/silver efflux 50.6 34 0.00073 34.2 5.8 47 92-140 274-321 (409)
105 TIGR02160 PA_CoA_Oxy5 phenylac 50.5 8.7 0.00019 37.4 1.6 27 43-75 323-350 (352)
106 PF01959 DHQS: 3-dehydroquinat 39.4 37 0.00081 33.1 3.9 61 150-234 230-293 (354)
107 PRK12446 undecaprenyldiphospho 37.8 36 0.00078 33.2 3.7 25 228-252 2-28 (352)
108 PRK02290 3-dehydroquinate synt 37.6 38 0.00082 32.9 3.6 62 150-235 220-284 (344)
109 PLN02292 ferric-chelate reduct 36.4 29 0.00063 37.3 2.9 24 329-352 665-688 (702)
110 KOG0427 Ubiquitin conjugating 34.5 97 0.0021 25.6 5.0 41 98-138 45-85 (161)
111 PLN02844 oxidoreductase/ferric 32.5 58 0.0012 35.2 4.4 24 329-352 674-697 (722)
112 TIGR00999 8a0102 Membrane Fusi 31.9 1.2E+02 0.0025 27.8 6.0 45 94-140 153-198 (265)
113 COG0633 Fdx Ferredoxin [Energy 31.5 32 0.0007 27.2 1.8 19 55-76 77-95 (102)
114 COG5310 Homospermidine synthas 31.4 1.3E+02 0.0028 29.3 6.0 44 328-371 153-206 (481)
115 PF08877 MepB: MepB protein; 30.8 1.2E+02 0.0027 24.9 5.1 46 115-176 18-63 (123)
116 PRK09859 multidrug efflux syst 27.8 1.8E+02 0.0039 28.6 6.8 43 96-140 252-295 (385)
117 TIGR02007 fdx_isc ferredoxin, 25.7 49 0.0011 26.4 1.9 18 55-75 80-98 (110)
118 PLN02631 ferric-chelate reduct 25.2 58 0.0013 35.0 2.9 24 329-352 662-685 (699)
119 PRK09578 periplasmic multidrug 25.1 2.1E+02 0.0045 28.2 6.7 44 95-140 254-298 (385)
120 PRK09289 riboflavin synthase s 24.5 2.8E+02 0.006 24.7 6.7 77 96-213 104-182 (194)
121 PRK15030 multidrug efflux syst 24.1 1.9E+02 0.0041 28.6 6.2 42 97-140 257-299 (397)
122 PRK13020 riboflavin synthase s 23.6 2.6E+02 0.0057 25.1 6.4 82 95-217 104-188 (206)
123 PRK11556 multidrug efflux syst 23.4 2.2E+02 0.0049 28.4 6.6 45 94-140 270-315 (415)
124 PF09923 DUF2155: Uncharacteri 21.8 2E+02 0.0043 22.3 4.5 72 99-206 2-74 (90)
125 PRK13020 riboflavin synthase s 21.3 3.8E+02 0.0083 24.1 7.0 79 96-215 8-88 (206)
126 COG0521 MoaB Molybdopterin bio 20.7 53 0.0011 28.7 1.2 15 228-242 68-82 (169)
127 PRK07533 enoyl-(acyl carrier p 20.3 6.4E+02 0.014 22.7 8.9 24 228-253 10-36 (258)
No 1
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=2.3e-58 Score=447.19 Aligned_cols=362 Identities=46% Similarity=0.793 Sum_probs=286.5
Q ss_pred CcccccceeeeeeccCCccccccCcccccccccccCCCccccccccccccCCcCCccEEEEeeeeeec----ccceeecc
Q 017070 1 MAHSAVSQVAVAVPVGTDSTLRSAPLFKTQNLRLGEKSWAPVLSLDLKSRNPRLRNRYVVCMSVQQAS----KSKVAVSP 76 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~l~C~~~~~~~----~sd~~i~~ 76 (378)
||++++++|+++.+.+++++.+. ..+.+.+++|.... +.-+ ++.+..++...- ..+.+. .....+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 71 (367)
T PLN03115 1 MAAAVNAAVSLPSSKSSSLPART-SAISPERIRLKKGP------LYYR-NNVSSGKRVVSI-RAQVTTETTTEAPAKVVK 71 (367)
T ss_pred Ccchhhhhhcccccccccccccc-eeccCccccccccc------eecc-cccccccccccc-cccccccccccCCccccc
Confidence 89999999999999998887777 66667777774422 1001 000011211111 111111 00011111
Q ss_pred cccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecc
Q 017070 77 LELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYS 156 (378)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~yS 156 (378)
........+++|.|.++.++.++|+++++++.++..+++++|+|+.++.++|+||||+.|.+++. +.+|.++..|+||
T Consensus 72 ~~~~~~~~~~~n~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~--~~~g~p~~~R~YS 149 (367)
T PLN03115 72 VSKKNEEGVVVNKFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGI--DKNGKPHKLRLYS 149 (367)
T ss_pred ccchhccCCceEeeccCCCeEEEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCc--CCCCCcCceeeee
Confidence 11233346899999999999999999999999888889999999988889999999999998763 2345666789999
Q ss_pred cccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecC
Q 017070 157 IASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATG 236 (378)
Q Consensus 157 ias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgG 236 (378)
|+|.|.++..+++.++|+||++.|.++ ++. .+.|.+|+||+++++||+|.|.||+|.+++.+. +..+++||||||
T Consensus 150 IAS~p~~~~~~~~~l~L~Vk~~~y~~~-~g~---~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~-~~~~~iImIAgG 224 (367)
T PLN03115 150 IASSALGDFGDSKTVSLCVKRLVYTND-QGE---IVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPK-DPNATIIMLATG 224 (367)
T ss_pred cCCCCcccCCCCCEEEEEEEEEEeecC-CCc---cCCeehHhhHhhCCCcCEEEEEeecCCceeCCc-CCCCCEEEEeCC
Confidence 999986432234789999998766432 222 267999999999999999999999999988764 356799999999
Q ss_pred CcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHH
Q 017070 237 TGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKI 316 (378)
Q Consensus 237 tGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i 316 (378)
||||||+||+++++.......++.++++||||+|+.++++|.+||++|+++++++|++++++||++.+|.|.++|+++++
T Consensus 225 TGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i 304 (367)
T PLN03115 225 TGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRM 304 (367)
T ss_pred eeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehhHH
Confidence 99999999999876554332333468999999999999999999999999987799999999999999999999999999
Q ss_pred HhhHHHHHhccC-CCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 317 EEYSDEIFKRLD-GGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 317 ~~~~~~l~~~~~-~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
.++.+++++.++ .+..||+|||++|+++|.++|.+++...|++|++++.+|+++||||+|||
T Consensus 305 ~e~~e~l~~~l~~~~~~vYiCGp~~M~~~V~~~l~~l~~~~g~~~~~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 305 AEYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAAKDGIDWFEYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHhhcccCCeEEEEeCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHCCCeEEecC
Confidence 988888877663 56899999999999999999999999999999999999999999999999
No 2
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=1.5e-52 Score=401.42 Aligned_cols=306 Identities=88% Similarity=1.488 Sum_probs=257.1
Q ss_pred eecccccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCc
Q 017070 73 AVSPLELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNV 152 (378)
Q Consensus 73 ~i~~~~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~ 152 (378)
.+++.++.++++.+.+.+.+..++.++|+++++++....+.++++|+|+.+.++.|+||||+.|.+++.+.+.+|.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~ 81 (307)
T PLN03116 2 AVKPLELEDAKEPPLNLYKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNV 81 (307)
T ss_pred CcccCChhhccCCceeeccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCc
Confidence 35566778888889999999999999999999999222223499999999888999999999998875321223444468
Q ss_pred eecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEE
Q 017070 153 RLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIM 232 (378)
Q Consensus 153 R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~ 232 (378)
|+|||||.|.++..++..++|+||++.+++|.++..+..++|.+|+||+++++||+|.|+||+|.|++.+..+..+++||
T Consensus 82 R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~vl 161 (307)
T PLN03116 82 RLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPEEDPNATHIM 161 (307)
T ss_pred eeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCCCCCCCcEEE
Confidence 99999999964322334899999999888888888777789999999999999999999999999988552224579999
Q ss_pred EecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccch
Q 017070 233 IATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYV 312 (378)
Q Consensus 233 IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v 312 (378)
||||||||||+||+++++..+.+..++.++++||||+|+.++++|.+||++|+++++++|++++++|++...|.+.++++
T Consensus 162 IAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v 241 (307)
T PLN03116 162 VATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYV 241 (307)
T ss_pred EecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccch
Confidence 99999999999999998765432112236799999999999999999999999998767999999999888888888999
Q ss_pred hHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 313 QDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 313 ~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
++.+.+..++++..+..+..||+|||++|++++.+.|.+...+.|+++++++..|+++|||++|+|
T Consensus 242 ~~~l~~~~~~~~~~~~~~~~vYiCGp~~mv~~v~~~L~~~~~~~g~~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 242 QDKIEEYSDEIFKLLDNGAHIYFCGLKGMMPGIQDTLKRVAEERGESWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred hhHHHHHHHHHHhhhcCCcEEEEeCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHcCceEEecC
Confidence 998887666655444456899999999999999999999999999999999999999999999999
No 3
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=1.7e-47 Score=363.36 Aligned_cols=285 Identities=65% Similarity=1.167 Sum_probs=232.2
Q ss_pred CCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCC
Q 017070 88 NLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFD 167 (378)
Q Consensus 88 ~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~ 167 (378)
|.+++++++.++|+++++++++.++.++++|+|+.+..++|+||||+.|.+++.+. ..|.+...|+|||+|.|.+...+
T Consensus 1 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~-~~g~~~~~R~YSIas~p~~~~~~ 79 (286)
T cd06208 1 NLYKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDA-KNGKPHKLRLYSIASSRYGDDGD 79 (286)
T ss_pred CCCCCCCCeEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcch-hcCCCCCceeeEecCCccccCCC
Confidence 35677889999999999999654455699999999778899999999998775321 02333468999999998642123
Q ss_pred CCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHH
Q 017070 168 GKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLR 247 (378)
Q Consensus 168 ~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~ 247 (378)
.+.++|+||.+.+..+.++. .+.|.+|.||+++++||+|.|.||+|.|++.+. +..+++||||||||||||++|++
T Consensus 80 ~~~l~l~Vk~~~~~~~~~~~---~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~-~~~~~~vlIagGtGIaP~~s~l~ 155 (286)
T cd06208 80 GKTLSLCVKRLVYTDPETDE---TKKGVCSNYLCDLKPGDDVQITGPVGKTMLLPE-DPNATLIMIATGTGIAPFRSFLR 155 (286)
T ss_pred CCEEEEEEEEEEEecCCCCc---eeccchHHHHhhCCCCCEEEEEeecCCcccCCC-CCCCCEEEEecCccHHHHHHHHH
Confidence 46899999997443332221 245999999999999999999999999988763 24579999999999999999999
Q ss_pred HHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhcc
Q 017070 248 RMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRL 327 (378)
Q Consensus 248 ~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~ 327 (378)
+++.......+..++++||||+|+.++++|.++|++|+++++++|++++++|+++..|.+..+|+++.+.+...++++.+
T Consensus 156 ~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l 235 (286)
T cd06208 156 RLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLL 235 (286)
T ss_pred HHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHH
Confidence 98765211111136799999999999999999999999988768999999999888888888999999887666665544
Q ss_pred C-CCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 328 D-GGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 328 ~-~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
+ .+..||+|||++|++++.+.|.++.. .+..+++++..|+++|||++|+|
T Consensus 236 ~~~~~~vYiCGp~~m~~~v~~~L~~~~~-~~~~~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 236 DKDNTHVYICGLKGMEPGVDDALTSVAE-GGLAWEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred hcCCcEEEEeCCchHHHHHHHHHHHHHh-ccHHHHHHHHHHHHcCCeEEecC
Confidence 3 44689999999999999999999876 66778999999999999999999
No 4
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=6.6e-46 Score=367.66 Aligned_cols=281 Identities=37% Similarity=0.637 Sum_probs=227.0
Q ss_pred CCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCCCCCCCCCCceecccccC
Q 017070 82 RSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIAST 160 (378)
Q Consensus 82 ~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~ 160 (378)
+...++|.|.++.+++++|++++++++++...++++|+|+.++ .+.|+||||+.|.+|+.+ ..|.+...|+|||+|.
T Consensus 129 ~~~~~~~~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~--~~g~~~~~R~YSIas~ 206 (411)
T TIGR03224 129 AAHPYVNLYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD--ASGKPHYARMYSVASP 206 (411)
T ss_pred ccCCccccccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC--cCCCcCcceeeeecCC
Confidence 3456789999999999999999999875555569999999876 688999999999987632 1344457899999998
Q ss_pred CCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcch
Q 017070 161 RYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIA 240 (378)
Q Consensus 161 p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGia 240 (378)
|.++..+.+.++|+||++.+ +..+ ...+|.+|+||+++++||+|.|.||+|.+|+.+. ...+++||||||||||
T Consensus 207 ~~~~~~~~~~l~l~Vk~v~~--~~~g---~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~-~~~~~lllIagGtGIA 280 (411)
T TIGR03224 207 RNGERPGYNNLALTVKRVTT--DHQG---NAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPN-HPESSIMMICTGTGSA 280 (411)
T ss_pred CCccCCCCCEEEEEEEEEEe--cCCC---CcCcccchhHHhcCCCcCEEEEEeccCCcccCCC-CCCCCEEEEecccCcH
Confidence 74321122579999998721 1111 1147999999999999999999999999887763 2357999999999999
Q ss_pred hhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhH
Q 017070 241 PFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYS 320 (378)
Q Consensus 241 P~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~ 320 (378)
||++|++++....... ..++++||||+|+.++++|.+||++|.+.+. ++++++|+++.. .++||++.+.+..
T Consensus 281 P~~s~l~~~~~~~~~~--~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~---~~~~~~sr~~~~---~~g~V~d~l~~~~ 352 (411)
T TIGR03224 281 PMRAMTERRRRRRDHG--EGGKLMLFFGARTKEELPYFGPLQKLPKDFI---DINFAFSRTPEQ---PKRYVQDAIRERA 352 (411)
T ss_pred HHHHHHHHHHHHhhcC--CCCCEEEEEecCccccchHHHHHHHHHhcCc---eEEEEeccCCcc---CcccHhhHHHHhH
Confidence 9999999887532110 1368999999999999999999999987654 455678886542 5789999988766
Q ss_pred HHHHhccC-CCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 321 DEIFKRLD-GGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 321 ~~l~~~~~-~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
.++...+. .+..||+|||++|++++.+.|.+++.+.|+.|+.+.++|+++||||+|+|
T Consensus 353 ~~v~~ll~~~~~~vYiCGp~~M~~~v~~~L~~~~~~~~~~~~~~~~~l~~~~r~~~e~~ 411 (411)
T TIGR03224 353 ADVAALLKDPNTYIYICGLKGMEEGVLDAFRDVCATNGLSWETLEPRLRAEGRLHLETY 411 (411)
T ss_pred HHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHCCCeEEecC
Confidence 66544443 45789999999999999999999999999999999999999999999999
No 5
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=1.3e-45 Score=358.42 Aligned_cols=258 Identities=22% Similarity=0.385 Sum_probs=215.7
Q ss_pred ccccccccccCCcCCccEEEEeeeeeecccceeecccccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEe
Q 017070 41 PVLSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVSPLELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVI 120 (378)
Q Consensus 41 ~~~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~~~~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l 120 (378)
....|+..++.. |++|+| |+.+.+||.|+ ++...+. . ...+.+.+.++|++++.++++ +++|+|
T Consensus 63 ~~~~l~~~~~~~---g~~L~C---~~~~~~d~~i~---~~~~~~~-~-~~~~~~~~~~~V~~i~~~s~d-----i~~l~l 126 (340)
T PRK11872 63 DEDALSERDLAQ---RKMLAC---QTRVKSDAAFY---FDFDSSL-C-NAGDTLKISGVVTAVELVSET-----TAILHL 126 (340)
T ss_pred ccccCCHHHHhC---CeEEEe---eCEECCceEEE---ecCcccc-c-cccccceeeEEEEEEEecCCC-----eEEEEE
Confidence 345688888888 999999 99999999997 3322111 1 112446788999999999998 999999
Q ss_pred eCC---CCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchh
Q 017070 121 DHG---GNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICS 197 (378)
Q Consensus 121 ~~~---~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S 197 (378)
+.+ ..+.|+||||+.|.+++.. .+|+|||+|.|.+ .+.++|+||.+ ++|.+|
T Consensus 127 ~~~~~~~~~~~~pGQ~v~l~~~~~~--------~~R~ySias~p~~----~~~l~~~ik~~-------------~~G~~s 181 (340)
T PRK11872 127 DASAHGRQLDFLPGQYARLQIPGTD--------DWRSYSFANRPNA----TNQLQFLIRLL-------------PDGVMS 181 (340)
T ss_pred EcCCCCCccCcCCCCEEEEEeCCCC--------ceeecccCCCCCC----CCeEEEEEEEC-------------CCCcch
Confidence 876 4678999999999988632 5899999999864 37899999998 889999
Q ss_pred hHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcc
Q 017070 198 NFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLL 276 (378)
Q Consensus 198 ~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~ 276 (378)
+||++ +++|++|.|+||+|.|++.. ..+++||||||||||||++|+++++..+. .++++||||+|+.++++
T Consensus 182 ~~L~~~l~~G~~v~i~gP~G~f~l~~---~~~~~vliagGtGiaP~~s~l~~~~~~~~-----~~~v~l~~g~r~~~dl~ 253 (340)
T PRK11872 182 NYLRERCQVGDEILFEAPLGAFYLRE---VERPLVFVAGGTGLSAFLGMLDELAEQGC-----SPPVHLYYGVRHAADLC 253 (340)
T ss_pred hhHhhCCCCCCEEEEEcCcceeEeCC---CCCcEEEEeCCcCccHHHHHHHHHHHcCC-----CCcEEEEEecCChHHhc
Confidence 99986 99999999999999998754 35899999999999999999999887543 25799999999999999
Q ss_pred cHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 277 YDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 277 ~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
|.++|++|+++++ +|+++++++++++.|.+..|++++.+.+.. + .....+||+|||++|++++.+.|.+.|
T Consensus 254 ~~~el~~~~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~--l---~~~~~~vy~CGp~~mv~~~~~~L~~~G 324 (340)
T PRK11872 254 ELQRLAAYAERLP-NFRYHPVVSKASADWQGKRGYIHEHFDKAQ--L---RDQAFDMYLCGPPPMVEAVKQWLDEQA 324 (340)
T ss_pred cHHHHHHHHHHCC-CcEEEEEEeCCCCcCCCceeeccHHHHHhh--c---CcCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 9999999999998 999999999888889888999988765421 1 113468999999999999999886554
No 6
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=2.1e-45 Score=357.32 Aligned_cols=264 Identities=22% Similarity=0.369 Sum_probs=218.4
Q ss_pred ccccccccccccCCcCCccEEEEeeeeeecccceeecccccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEE
Q 017070 39 WAPVLSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVSPLELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHI 118 (378)
Q Consensus 39 ~~~~~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~~~~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l 118 (378)
+.....|++++++. |++|+| |+.|.+||+|+. ....+. .. .+.+.+.++|++++.++++ +++|
T Consensus 58 ~~~~~~l~~~~~~~---g~~L~C---~~~~~~d~~i~~---~~~~~~--~~-~~~~~~~~~V~~~~~~~~d-----~~~l 120 (339)
T PRK07609 58 PHQASALSGEERAA---GEALTC---CAKPLSDLVLEA---REVPAL--GD-IPVKKLPCRVASLERVAGD-----VMRL 120 (339)
T ss_pred cccccCCCHHHHhC---CcEEEe---eCEECCCEEEEe---cccccc--cc-ccceEEEEEEEEEEcCCCc-----EEEE
Confidence 33467789999988 999999 999999999983 332221 11 3456789999999999998 9999
Q ss_pred EeeCC--CCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCch
Q 017070 119 VIDHG--GNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGIC 196 (378)
Q Consensus 119 ~l~~~--~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~ 196 (378)
+|+.+ ..+.|+||||+.|.+++. ..|+|||+|.|.+ .+.++|+||.. ++|.+
T Consensus 121 ~l~~~~~~~~~~~pGQfv~l~~~~~---------~~R~ySias~p~~----~~~l~~~ik~~-------------~~G~~ 174 (339)
T PRK07609 121 KLRLPATERLQYLAGQYIEFILKDG---------KRRSYSIANAPHS----GGPLELHIRHM-------------PGGVF 174 (339)
T ss_pred EEEcCCCCCCccCCCCeEEEECCCC---------ceeeeecCCCCCC----CCEEEEEEEec-------------CCCcc
Confidence 99976 357899999999998752 5799999999864 37899999997 88999
Q ss_pred hhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCc
Q 017070 197 SNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSL 275 (378)
Q Consensus 197 S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~ 275 (378)
|+||++ +++|++|.+.||+|.|++.+. ..+++|||||||||||+++|+++++..+.. ++++||||+|+.+++
T Consensus 175 s~~l~~~l~~G~~v~v~gP~G~~~~~~~--~~~~ivlIagGtGiaP~~s~l~~~~~~~~~-----~~i~l~~g~r~~~dl 247 (339)
T PRK07609 175 TDHVFGALKERDILRIEGPLGTFFLRED--SDKPIVLLASGTGFAPIKSIVEHLRAKGIQ-----RPVTLYWGARRPEDL 247 (339)
T ss_pred HHHHHHhccCCCEEEEEcCceeEEecCC--CCCCEEEEecCcChhHHHHHHHHHHhcCCC-----CcEEEEEecCChHHh
Confidence 999985 999999999999999988652 467999999999999999999999876532 579999999999999
Q ss_pred ccHHHHHHHHhhCCCceEEEEEeecc--ccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 276 LYDDEFTKYLQDYPDNFRYDKALSRE--QKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 276 ~~~del~~l~~~~~~~~~~~~~~Sr~--~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
++.++|++|.++++ +|++++++|++ ++.|.+..|++++.+.+...+ . .+..+|+|||++|++++.+.|.+.
T Consensus 248 ~~~e~l~~~~~~~~-~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~~~----~-~~~~vy~CGp~~m~~~~~~~l~~~- 320 (339)
T PRK07609 248 YLSALAEQWAEELP-NFRYVPVVSDALDDDAWTGRTGFVHQAVLEDFPD----L-SGHQVYACGSPVMVYAARDDFVAA- 320 (339)
T ss_pred ccHHHHHHHHHhCC-CeEEEEEecCCCCCCCccCccCcHHHHHHhhccc----c-cCCEEEEECCHHHHHHHHHHHHHc-
Confidence 99999999999988 89999999984 456778889988876543211 1 457899999999999999888664
Q ss_pred HHcCCCHHH
Q 017070 354 EQRGESWDQ 362 (378)
Q Consensus 354 ~~~g~~~~~ 362 (378)
|++.+.
T Consensus 321 ---G~~~~~ 326 (339)
T PRK07609 321 ---GLPAEE 326 (339)
T ss_pred ---CCCHHH
Confidence 554443
No 7
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=4.5e-42 Score=322.68 Aligned_cols=254 Identities=35% Similarity=0.602 Sum_probs=209.5
Q ss_pred EeEEEEecCCCCCCceEEEEeeCC--CCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEE
Q 017070 100 IVSVERVVGAKAPGETCHIVIDHG--GNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRR 177 (378)
Q Consensus 100 V~~~~~lt~~~~~~~v~~l~l~~~--~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~ 177 (378)
|+..+++++.+++.++++|+|+.+ ..+.|.||||+.|.+++. ...|+|||+|.|++. .+.++|+||.
T Consensus 2 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~~--------~~~R~ySias~p~~~---~~~l~l~Ik~ 70 (267)
T cd06182 2 ITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPNP--------LQPRYYSIASSPDVD---PGEVHLCVRV 70 (267)
T ss_pred ccccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCCC--------CCCeeEeecCCCCCC---CCEEEEEEEE
Confidence 456678888889999999999998 568899999999998752 368999999998642 3789999998
Q ss_pred eeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCC-CCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhc---c
Q 017070 178 AVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSG-KIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFME---S 253 (378)
Q Consensus 178 ~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G-~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~---~ 253 (378)
..+..+ .+.. ..|.+|.+|+++++||.|.+.||+| .|.+.. +..+++|||||||||||+++|+++++.. .
T Consensus 71 ~~~~~~-~~~~---~~G~~S~~L~~lk~Gd~v~v~~p~G~~f~l~~--~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~ 144 (267)
T cd06182 71 VSYEAP-AGRI---RKGVCSNFLAGLQLGAKVTVFIRPAPSFRLPK--DPTTPIIMVGPGTGIAPFRGFLQERAALRANG 144 (267)
T ss_pred EEEecC-CCCe---eccchhHHHhhCCCCCEEEEEEecCCcccCCC--CCCCCEEEEecCccHHHHHHHHHHHHHhhhcc
Confidence 733222 1111 4599999999999999999999999 777655 2468999999999999999999998763 1
Q ss_pred CCCcccCCeEEEEEeecCC-CCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeE
Q 017070 254 VPTYKFGGLAWLFLGVANP-DSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAH 332 (378)
Q Consensus 254 ~~~~~~~~~v~L~~g~r~~-~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~ 332 (378)
.. .++++||||+|+. ++++|.++|.+|.++++ +|+++.++|+++.. ..+++++.+....+.+.+.+.++..
T Consensus 145 ~~----~~~v~l~~g~r~~~~d~~~~del~~~~~~~~-~~~~~~~~S~~~~~---~~~~v~~~l~~~~~~l~~~l~~~~~ 216 (267)
T cd06182 145 KA----RGPAWLFFGCRNFASDYLYREELQEALKDGA-LTRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLNEGAH 216 (267)
T ss_pred cc----CCCEEEEEeCCCCcccccHHHHHHHHHhCCC-cceEEEEEccCCCC---CceehHHHHHHhHHHHHHHHhcCCE
Confidence 11 3679999999999 89999999999999776 89999999986532 3578888887665555444445569
Q ss_pred EEEeCCCC-cHHHHHHHHHHHHHHcC----CCHHHHHHHHHHcCCeEEeeC
Q 017070 333 IYFCGLKG-MMPGIQETLKRVAEQRG----ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 333 vyvCGp~~-m~~~v~~~L~~~g~~~g----~~~~~~~~~l~~~~r~~~e~~ 378 (378)
||+|||+. |++++.+.|.+...+.+ +.++.++++|+++|||++|||
T Consensus 217 vyvCGp~~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 217 IYVCGDAKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred EEEECCcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence 99999999 99999999999977753 678899999999999999999
No 8
>PRK05713 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=332.03 Aligned_cols=248 Identities=17% Similarity=0.251 Sum_probs=200.3
Q ss_pred cccccccccCCcCCccEEEEeeeeeecccceeecccccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEee
Q 017070 42 VLSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVSPLELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVID 121 (378)
Q Consensus 42 ~~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~~~~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~ 121 (378)
...|++.+++. |++|+| |+.+.+|++|+.. ++ . ...++++|++++++++| +++|+|+
T Consensus 56 ~~~l~~~~~~~---g~~L~C---~~~~~~d~~i~~~---~~-~--------~~~~~~~V~~~~~~t~d-----v~~l~l~ 112 (312)
T PRK05713 56 PEALAAEKREQ---GWRLAC---QCRVVGDLRVEVF---DP-Q--------RDGLPARVVALDWLGGD-----VLRLRLE 112 (312)
T ss_pred cccCCHHHHhC---CeEEEe---ECEECCceEEEec---Cc-c--------cCcCCeEEEEEecCCCC-----EEEEEEc
Confidence 35688888888 999999 9999999999842 11 1 12366999999999998 9999999
Q ss_pred CCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhh
Q 017070 122 HGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLC 201 (378)
Q Consensus 122 ~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~ 201 (378)
.+..+.|+||||+.|.+++ ...|+|||+|.|.++ +.++|+||+. ++|.+|.+|.
T Consensus 113 ~~~~~~~~~GQfv~l~~~~---------~~~R~ySias~p~~~----~~l~~~I~~~-------------~~G~~s~~l~ 166 (312)
T PRK05713 113 PERPLRYRAGQHLVLWTAG---------GVARPYSLASLPGED----PFLEFHIDCS-------------RPGAFCDAAR 166 (312)
T ss_pred cCCcCCcCCCCEEEEecCC---------CcccccccCcCCCCC----CeEEEEEEEc-------------CCCccchhhh
Confidence 8778899999999998764 258999999998643 7899999987 8899999998
Q ss_pred cCCCCCEEEEEeeCCCC-CCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHH
Q 017070 202 NSKPGDKVLITGPSGKI-MLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDE 280 (378)
Q Consensus 202 ~l~~Gd~v~v~GP~G~~-~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~de 280 (378)
++++||+|.+++|+|.+ ++.+. ...+++||||||||||||+||+++++..+.. ++++|+||+|+.++++|.++
T Consensus 167 ~l~~Gd~v~l~~p~gg~~~~~~~-~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~-----~~v~l~~g~r~~~d~~~~~e 240 (312)
T PRK05713 167 QLQVGDLLRLGELRGGALHYDPD-WQERPLWLLAAGTGLAPLWGILREALRQGHQ-----GPIRLLHLARDSAGHYLAEP 240 (312)
T ss_pred cCCCCCEEEEccCCCCceEecCC-CCCCcEEEEecCcChhHHHHHHHHHHhcCCC-----CcEEEEEEcCchHHhhhHHH
Confidence 89999999999999854 44432 1357999999999999999999998876532 57999999999999999999
Q ss_pred HHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCH
Q 017070 281 FTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVAEQRGESW 360 (378)
Q Consensus 281 l~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~ 360 (378)
|++|+++++ +|++++++++. +++.+.+ +. .....+.+|+|||++|++++.+.|.+ .|++.
T Consensus 241 l~~l~~~~~-~~~~~~~~~~~----------~~~~l~~----~~-~~~~~~~vyiCGp~~mv~~~~~~L~~----~Gv~~ 300 (312)
T PRK05713 241 LAALAGRHP-QLSVELVTAAQ----------LPAALAE----LR-LVSRQTMALLCGSPASVERFARRLYL----AGLPR 300 (312)
T ss_pred HHHHHHHCC-CcEEEEEECcc----------hhhhhhh----cc-CCCCCeEEEEeCCHHHHHHHHHHHHH----cCCCH
Confidence 999999988 89998877542 3332221 11 11245789999999999999999865 46655
Q ss_pred HHHH
Q 017070 361 DQKL 364 (378)
Q Consensus 361 ~~~~ 364 (378)
+.++
T Consensus 301 ~~i~ 304 (312)
T PRK05713 301 NQLL 304 (312)
T ss_pred HHee
Confidence 5443
No 9
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=100.00 E-value=6.4e-42 Score=340.33 Aligned_cols=273 Identities=22% Similarity=0.345 Sum_probs=213.0
Q ss_pred cccccccccCCcCCccEEEEeeeeeecccceeecccccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEee
Q 017070 42 VLSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVSPLELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVID 121 (378)
Q Consensus 42 ~~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~~~~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~ 121 (378)
...|+.+++.. |++|+| |+.+.+|++|+. ... . .+...++++|++++.++++ +++|+|+
T Consensus 96 ~~~l~~~e~~~---g~rLaC---q~~~~~d~~ie~---~~~--~-----~~~~~~~~~V~~~~~ls~~-----i~~l~l~ 154 (409)
T PRK05464 96 LSHISKREAKE---GWRLSC---QVKVKQDMKIEV---PEE--I-----FGVKKWECTVISNDNVATF-----IKELVLK 154 (409)
T ss_pred hhhcCHhhccC---CcEEEe---eCEECCCEEEEE---Ccc--c-----ccceEEEEEEEEcccCCch-----hheEEEe
Confidence 45678888888 999999 999999999973 221 1 1234589999999999998 9999999
Q ss_pred CC--CCccccCCcEEEEeCCCCCCC-----------------------CCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 122 HG--GNVPYWEGQSYGVIPPGENPK-----------------------KPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 122 ~~--~~~~~~pGQ~v~l~~~~~~~~-----------------------~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
.+ .++.|+||||+.|.+++.+.+ ....+...|+|||+|.|.++ +.++|+||
T Consensus 155 ~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~----~~l~~~vr 230 (409)
T PRK05464 155 IPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYSMANYPEEK----GIIMLNVR 230 (409)
T ss_pred cCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeeccCCCCCCC----CeEEEEEE
Confidence 87 467899999999998742100 00112467999999998653 68999999
Q ss_pred EeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCC
Q 017070 177 RAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPT 256 (378)
Q Consensus 177 ~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~ 256 (378)
...+. +... ..++|.+|.||+++++||+|.|.||+|.|++.. ..+++|||||||||||+++|+++++.....
T Consensus 231 ~~~~~-~~~~---~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~---~~~~ivlIAgGtGIaP~~sml~~~l~~~~~- 302 (409)
T PRK05464 231 IATPP-PGNP---DVPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD---TDAEMVFIGGGAGMAPMRSHIFDQLKRLKS- 302 (409)
T ss_pred EeecC-CCcC---CCCCCchhhHHHhCCCCCEEEEEccccCcEecC---CCceEEEEEeccChhHHHHHHHHHHhCCCC-
Confidence 74211 0000 116799999999999999999999999998764 458999999999999999999987765332
Q ss_pred cccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccc--cccCCCccchhHHHHhhH-HHHHhccCCCeEE
Q 017070 257 YKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQ--KNKKGGKMYVQDKIEEYS-DEIFKRLDGGAHI 333 (378)
Q Consensus 257 ~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~--~~~~~~~~~v~~~i~~~~-~~l~~~~~~~~~v 333 (378)
.++++||||+|+.++++|.++|++|.++++ ||+++++++++. +.|.+..|++++.+.+.. ... ....+..|
T Consensus 303 ---~~~v~L~~g~r~~~d~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l~~~--~~~~~~~v 376 (409)
T PRK05464 303 ---KRKISFWYGARSLREMFYVEDFDQLAAENP-NFKWHVALSDPLPEDNWTGYTGFIHNVLYENYLKDH--EAPEDCEY 376 (409)
T ss_pred ---CceEEEEEecCCHHHhhHHHHHHHHHHhCC-CeEEEEEEcCCCCCCCCCCccceeCHHHHHhhhhhc--CCCCCeEE
Confidence 267999999999999999999999999998 999999998753 457777889888765421 110 01245789
Q ss_pred EEeCCCCcHHHHHHHHHHHH
Q 017070 334 YFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 334 yvCGp~~m~~~v~~~L~~~g 353 (378)
|+|||++|++++.+.|.+.|
T Consensus 377 yiCGP~~m~~av~~~L~~~G 396 (409)
T PRK05464 377 YMCGPPMMNAAVIKMLKDLG 396 (409)
T ss_pred EEECCHHHHHHHHHHHHHcC
Confidence 99999999999998887653
No 10
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=100.00 E-value=6.1e-42 Score=340.06 Aligned_cols=273 Identities=22% Similarity=0.340 Sum_probs=212.1
Q ss_pred cccccccccCCcCCccEEEEeeeeeecccceeecccccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEee
Q 017070 42 VLSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVSPLELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVID 121 (378)
Q Consensus 42 ~~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~~~~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~ 121 (378)
...|+..++++ |++|+| |+.+.+|++|+. ... . + +...++++|+++++++++ +++++|+
T Consensus 92 ~~~L~~~~~~~---g~rLaC---q~~~~~d~~i~~---~~~-~-----~-~~~~~~~~v~~~~~~s~~-----i~~l~l~ 150 (405)
T TIGR01941 92 LSHFSKREAKE---GWRLSC---QVKVKQDMSIEI---PEE-I-----F-GVKKWECEVISNDNVATF-----IKELVLK 150 (405)
T ss_pred hhhcCHhHhcC---CcEEEe---eCEECCCEEEEE---Ccc-c-----c-ccceeeeEEEEcccccch-----hheEEEe
Confidence 45678888888 999999 999999999973 221 1 1 234588999999999998 9999999
Q ss_pred CCC--CccccCCcEEEEeCCCCCCC-----------------------CCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 122 HGG--NVPYWEGQSYGVIPPGENPK-----------------------KPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 122 ~~~--~~~~~pGQ~v~l~~~~~~~~-----------------------~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
.+. ++.|+||||+.|.++..+.+ .+..+...|+|||+|.|.++ +.++|+||
T Consensus 151 ~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~----~~l~~~vr 226 (405)
T TIGR01941 151 LPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYSMANYPAEK----GIIKLNVR 226 (405)
T ss_pred cCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeecCCCCCCCC----CeEEEEEE
Confidence 863 47899999999998743100 00112467999999998653 78999999
Q ss_pred EeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCC
Q 017070 177 RAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPT 256 (378)
Q Consensus 177 ~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~ 256 (378)
...+.. .. ...++|.+|.||+++++||+|.|+||+|.|++.+ ..+++|||||||||||+++|+++++.....
T Consensus 227 ~~~~~~---~~-~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~---~~~~lvlIAgGtGIaP~lsmi~~~l~~~~~- 298 (405)
T TIGR01941 227 IATPPF---IN-SDIPPGIMSSYIFSLKPGDKVTISGPFGEFFAKD---TDAEMVFIGGGAGMAPMRSHIFDQLKRLKS- 298 (405)
T ss_pred EeccCc---cc-CCCCCCcHHHHHhcCCCcCEEEEEeccCCCeecC---CCCCEEEEecCcCcchHHHHHHHHHhcCCC-
Confidence 741100 00 0016799999999999999999999999998864 357999999999999999999987764322
Q ss_pred cccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccc--cccCCCccchhHHHHhh-HHHHHhccCCCeEE
Q 017070 257 YKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQ--KNKKGGKMYVQDKIEEY-SDEIFKRLDGGAHI 333 (378)
Q Consensus 257 ~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~--~~~~~~~~~v~~~i~~~-~~~l~~~~~~~~~v 333 (378)
.++++|+||+|+.++++|.++|++|.++++ +|++++++++++ +.|.+..|++++.+.+. +... ....+..|
T Consensus 299 ---~~~v~l~~g~R~~~dl~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~l~~~--~~~~~~~v 372 (405)
T TIGR01941 299 ---KRKISFWYGARSLREMFYQEDFDQLEAENP-NFVWHVALSDPQPEDNWTGYTGFIHNVLYENYLKDH--DAPEDCEF 372 (405)
T ss_pred ---CCeEEEEEecCCHHHHhHHHHHHHHHHhCC-CeEEEEEeCCCCccCCCCCccceeCHHHHHhhhccc--CCCCCeEE
Confidence 357999999999999999999999999998 999999998753 46777888988776532 1110 01245789
Q ss_pred EEeCCCCcHHHHHHHHHHHH
Q 017070 334 YFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 334 yvCGp~~m~~~v~~~L~~~g 353 (378)
|+|||++|++++.+.|.+.|
T Consensus 373 ylCGP~~m~~av~~~L~~~G 392 (405)
T TIGR01941 373 YMCGPPMMNAAVIKMLEDLG 392 (405)
T ss_pred EEeCCHHHHHHHHHHHHHcC
Confidence 99999999999998887653
No 11
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=3.1e-40 Score=306.81 Aligned_cols=225 Identities=26% Similarity=0.380 Sum_probs=184.9
Q ss_pred ceEEEEeeCC-CCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCC
Q 017070 114 ETCHIVIDHG-GNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSK 192 (378)
Q Consensus 114 ~v~~l~l~~~-~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~ 192 (378)
++++|+|+.+ ..+.|+||||+.|.+++. ...|+|||+|.|.+ +.++|+||++... ..+
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~~--------~~~R~YSIas~p~~-----~~l~l~Vk~~~~~--------~~~ 75 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRHP--------LPHREYSIASLPAD-----GALELLVRQVRHA--------DGG 75 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCCC--------CCCcceEeccCCCC-----CEEEEEEEEeccC--------CCC
Confidence 6999999998 568899999999997641 36899999999853 6899999987100 002
Q ss_pred CCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecC
Q 017070 193 SGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVAN 271 (378)
Q Consensus 193 ~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~ 271 (378)
.|.+|+||++ +++|++|.|.||.|..|..+. ..+++||||||||||||+||++++...+. ++++||||+|+
T Consensus 76 ~G~~S~~L~~~~~~Gd~v~i~gp~gg~F~~~~--~~~~~vlIAgGtGIaP~~s~l~~~~~~~~------~~~~l~~g~r~ 147 (245)
T cd06200 76 LGLGSGWLTRHAPIGASVALRLRENPGFHLPD--DGRPLILIGNGTGLAGLRSHLRARARAGR------HRNWLLFGERQ 147 (245)
T ss_pred CeeechhhhhCCCCCCEEEEEecCCCcccCCC--CCCCEEEEecCcChHHHHHHHHHHHhccC------CCeEEEEecCC
Confidence 2889999998 799999999998775555552 45899999999999999999999876542 46899999999
Q ss_pred CC-CcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCC-CcHHHHHHHH
Q 017070 272 PD-SLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLK-GMMPGIQETL 349 (378)
Q Consensus 272 ~~-~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~-~m~~~v~~~L 349 (378)
.+ +++|.+||++|.++++ ++++++++|+++. .++|+++.+.+..+++...+..+..||+|||+ +|++++++.|
T Consensus 148 ~~~d~~~~~el~~~~~~~~-~~~~~~~~s~~~~----~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l 222 (245)
T cd06200 148 AAHDFFCREELEAWQAAGH-LARLDLAFSRDQA----QKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVL 222 (245)
T ss_pred ccccHhHHHHHHHHHHCCC-cceEEEEEccCCC----CCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHH
Confidence 85 8999999999999887 8999999998643 36899998887666554433456799999999 9999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 350 KRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 350 ~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
.++..+ +.++.|+++|||++|+|
T Consensus 223 ~~~~~~------~~~~~~~~~~r~~~d~~ 245 (245)
T cd06200 223 DEILGE------EAVEALLAAGRYRRDVY 245 (245)
T ss_pred HHHHHH------HHHHHHHHCCCeEEecC
Confidence 988754 34789999999999999
No 12
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=5.5e-40 Score=312.02 Aligned_cols=237 Identities=28% Similarity=0.498 Sum_probs=197.8
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCC-------CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCC
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGG-------NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSF 166 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-------~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~ 166 (378)
..+.++|+++++++++. ..+++.|+|+.+. ...|.||||+.|.+++. ...|+|||+|.|.+
T Consensus 44 ~~~~~~l~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~--------~~~R~YSias~p~~--- 111 (289)
T cd06201 44 RTKALELVERKDYGAAV-QAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS--------DVPRFYSLASSSSD--- 111 (289)
T ss_pred CccceEEEeeeecCCCC-CCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC--------CCCceEecCCCCCC---
Confidence 56889999999999521 1249999999876 46799999999987653 25799999999843
Q ss_pred CCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEe-eCCCCCCCCCCCCCCcEEEEecCCcchhhHHH
Q 017070 167 DGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITG-PSGKIMLLPEDNPNATHIMIATGTGIAPFRGY 245 (378)
Q Consensus 167 ~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~G-P~G~~~~~~~~~~~~~vv~IAgGtGiaP~~si 245 (378)
+.++|+||+. ++|.+|+||+++++|++|.+.+ |.|.|.+.. ..+++||||||||||||++|
T Consensus 112 --g~l~l~Vk~~-------------~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~~~---~~~~lvlIAgGtGIaP~~s~ 173 (289)
T cd06201 112 --GFLEICVRKH-------------PGGLCSGYLHGLKPGDTIKAFIRPNPSFRPAK---GAAPVILIGAGTGIAPLAGF 173 (289)
T ss_pred --CeEEEEEEeC-------------CCccchhhHhhCCCcCEEEEEeccCCCccCCC---CCCCEEEEecCcCHHHHHHH
Confidence 6899999987 7899999999999999999985 788877643 46899999999999999999
Q ss_pred HHHHHhccCCCcccCCeEEEEEeecCCC-CcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHH
Q 017070 246 LRRMFMESVPTYKFGGLAWLFLGVANPD-SLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIF 324 (378)
Q Consensus 246 l~~~~~~~~~~~~~~~~v~L~~g~r~~~-~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~ 324 (378)
+++.. . .++++||||+|+.+ +++|.+||++|.++++ +++++.++|++. ..+|+++.+....+.+.
T Consensus 174 l~~~~-~-------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~-~~~~~~~~s~~~-----~~g~v~~~l~~~~~~l~ 239 (289)
T cd06201 174 IRANA-A-------RRPMHLYWGGRDPASDFLYEDELDQYLADGR-LTQLHTAFSRTP-----DGAYVQDRLRADAERLR 239 (289)
T ss_pred HHhhh-c-------cCCEEEEEEecCcccchHHHHHHHHHHHcCC-CceEEEEECCCC-----CcccchhHHHHhHHHHH
Confidence 99752 1 25799999999985 8999999999999887 889999998763 35789888776555554
Q ss_pred hccCCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 325 KRLDGGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 325 ~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
..+.++..||+|||++|++++.+.|.++..+++++ +..|+++|||.+|||
T Consensus 240 ~~~~~~~~vyiCGp~~M~~~v~~~L~~i~~~~~~~----~~~~~~~g~~~~d~y 289 (289)
T cd06201 240 RLIEDGAQIMVCGSRAMAQGVAAVLEEILAPQPLS----LDELKLQGRYAEDVY 289 (289)
T ss_pred HHHHCCcEEEEECCHHHHHHHHHHHHHHHHHcCcC----HHHHHHCCCEEeecC
Confidence 44446789999999999999999999998777643 788899999999999
No 13
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=6.2e-40 Score=303.50 Aligned_cols=224 Identities=26% Similarity=0.384 Sum_probs=188.1
Q ss_pred CCCeEEEEeEEEEecCCCCCCceEEEEeeCCCCc--cccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCE
Q 017070 93 KEPYTATIVSVERVVGAKAPGETCHIVIDHGGNV--PYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKT 170 (378)
Q Consensus 93 ~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~--~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~ 170 (378)
...+.++|++++.++++ +++|+|+.+.+. .|+||||+.|.+++.. ..|+|||+|.|.+ .+.
T Consensus 4 ~~~~~~~v~~~~~~t~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--------~~r~ySi~s~~~~----~~~ 66 (238)
T cd06211 4 VKDFEGTVVEIEDLTPT-----IKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--------GTRAFSIASSPSD----AGE 66 (238)
T ss_pred ceEEeEEEEEEEecCCC-----EEEEEEEcCCCCcCccCCCCeEEEEcCCCC--------CccccccCCCCCC----CCE
Confidence 35688999999999998 999999987654 8999999999988632 5799999999864 378
Q ss_pred EEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHH
Q 017070 171 ASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRM 249 (378)
Q Consensus 171 l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~ 249 (378)
++|+||.+ ++|.+|++|++ +++|++|.|.||+|.+++.+. ..+++|||||||||||+++|++++
T Consensus 67 l~l~i~~~-------------~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~~--~~~~~v~iagG~GiaP~~~~l~~~ 131 (238)
T cd06211 67 IELHIRLV-------------PGGIATTYVHKQLKEGDELEISGPYGDFFVRDS--DQRPIIFIAGGSGLSSPRSMILDL 131 (238)
T ss_pred EEEEEEEC-------------CCCcchhhHhhcCCCCCEEEEECCccceEecCC--CCCCEEEEeCCcCHHHHHHHHHHH
Confidence 99999987 78999999985 999999999999999987652 358999999999999999999998
Q ss_pred HhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccc--cccCCCccchhHHHHhhHHHHHhcc
Q 017070 250 FMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQ--KNKKGGKMYVQDKIEEYSDEIFKRL 327 (378)
Q Consensus 250 ~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~--~~~~~~~~~v~~~i~~~~~~l~~~~ 327 (378)
+..+.. ++++|+|++|+.++++|.++|++|++.++ +|+++++++++. ..|.+..|++++.+.+...+ .
T Consensus 132 ~~~~~~-----~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~g~v~~~l~~~~~~----~ 201 (238)
T cd06211 132 LERGDT-----RKITLFFGARTRAELYYLDEFEALEKDHP-NFKYVPALSREPPESNWKGFTGFVHDAAKKHFKN----D 201 (238)
T ss_pred HhcCCC-----CcEEEEEecCChhhhccHHHHHHHHHhCC-CeEEEEEECCCCCCcCcccccCcHHHHHHHhccc----c
Confidence 876532 57999999999999999999999999988 899999999854 45777788888766543211 1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHH
Q 017070 328 DGGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQ 362 (378)
Q Consensus 328 ~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~ 362 (378)
.++..+|+|||++|++++.+.|.+. |++.+.
T Consensus 202 ~~~~~vyvCGp~~m~~~~~~~L~~~----Gv~~~~ 232 (238)
T cd06211 202 FRGHKAYLCGPPPMIDACIKTLMQG----RLFERD 232 (238)
T ss_pred cccCEEEEECCHHHHHHHHHHHHHc----CCCHHH
Confidence 2457899999999999999988764 555444
No 14
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=1.7e-39 Score=300.01 Aligned_cols=216 Identities=28% Similarity=0.391 Sum_probs=184.1
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCC------ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCC
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGN------VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGK 169 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~------~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~ 169 (378)
++++|+++++++++ +++++|+.+.. +.|+||||+.|.+++. ..+|+|||+|.|.++ +
T Consensus 2 ~~~~v~~~~~~~~~-----~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~R~ySi~s~~~~~----~ 64 (236)
T cd06210 2 REAEIVAVDRVSSN-----VVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--------DTRRSYSLANTPNWD----G 64 (236)
T ss_pred ceEEEEEEeecCCc-----eEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--------ccceecccCCCCCCC----C
Confidence 56999999999998 99999998764 6899999999998863 258999999998642 7
Q ss_pred EEEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHH
Q 017070 170 TASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRR 248 (378)
Q Consensus 170 ~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~ 248 (378)
.++|+||.. ++|.+|++|++ +++|++|.|+||+|.|++.+ +..+++|||||||||||+++|+++
T Consensus 65 ~l~~~i~~~-------------~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~--~~~~~~vliagGtGiaP~~~~l~~ 129 (236)
T cd06210 65 RLEFLIRLL-------------PGGAFSTYLETRAKVGQRLNLRGPLGAFGLRE--NGLRPRWFVAGGTGLAPLLSMLRR 129 (236)
T ss_pred EEEEEEEEc-------------CCCccchhhhhCcCCCCEEEEecCcceeeecC--CCCccEEEEccCcchhHHHHHHHH
Confidence 899999987 78999999998 99999999999999987755 245789999999999999999999
Q ss_pred HHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccC
Q 017070 249 MFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLD 328 (378)
Q Consensus 249 ~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~ 328 (378)
+...+. .++++|+|++|+.++++|.++|++|++.++ +|++++++++++..|.+..+++.+.+.+.+.+ ..
T Consensus 130 ~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l~~----~~ 199 (236)
T cd06210 130 MAEWGE-----PQEARLFFGVNTEAELFYLDELKRLADSLP-NLTVRICVWRPGGEWEGYRGTVVDALREDLAS----SD 199 (236)
T ss_pred HHhcCC-----CceEEEEEecCCHHHhhhHHHHHHHHHhCC-CeEEEEEEcCCCCCcCCccCcHHHHHHHhhcc----cC
Confidence 876543 257999999999999999999999999998 99999999987777877788887765543211 12
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 329 GGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 329 ~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
....||+|||++|++++++.|++.|
T Consensus 200 ~~~~vyicGp~~m~~~~~~~l~~~G 224 (236)
T cd06210 200 AKPDIYLCGPPGMVDAAFAAAREAG 224 (236)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcC
Confidence 4568999999999999999887654
No 15
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=1.4e-39 Score=298.49 Aligned_cols=218 Identities=22% Similarity=0.360 Sum_probs=186.4
Q ss_pred EEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEE
Q 017070 98 ATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRR 177 (378)
Q Consensus 98 a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~ 177 (378)
++|++++.++++ +++|+|+.+..+.|.||||+.|.+++. ..|+|||+|.|.++ +.++|+||.
T Consensus 1 ~~v~~~~~~t~~-----~~~l~l~~~~~~~~~pGQ~v~l~~~~~---------~~r~ySi~s~~~~~----~~l~~~vk~ 62 (224)
T cd06189 1 CKVESIEPLNDD-----VYRVRLKPPAPLDFLAGQYLDLLLDDG---------DKRPFSIASAPHED----GEIELHIRA 62 (224)
T ss_pred CEEEEEEeCCCc-----eEEEEEecCCCcccCCCCEEEEEcCCC---------CceeeecccCCCCC----CeEEEEEEe
Confidence 579999999998 999999988778899999999998762 58999999998643 789999999
Q ss_pred eeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCC
Q 017070 178 AVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPT 256 (378)
Q Consensus 178 ~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~ 256 (378)
. ++|.+|++|++ +++|++|.|+||+|.+++.+. ..+++|||||||||||+++|++++.....
T Consensus 63 ~-------------~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~~--~~~~ivliagG~GiaP~~~~l~~l~~~~~-- 125 (224)
T cd06189 63 V-------------PGGSFSDYVFEELKENGLVRIEGPLGDFFLRED--SDRPLILIAGGTGFAPIKSILEHLLAQGS-- 125 (224)
T ss_pred c-------------CCCccHHHHHHhccCCCEEEEecCCccEEeccC--CCCCEEEEecCcCHHHHHHHHHHHHhcCC--
Confidence 7 78999999987 999999999999999987652 46799999999999999999999987653
Q ss_pred cccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEe
Q 017070 257 YKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFC 336 (378)
Q Consensus 257 ~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvC 336 (378)
.++++|+|++|+.++++|.++|++|+++++ +|++++++++++++|.+..+++++.+.+... . ..+..+|+|
T Consensus 126 ---~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~----~-~~~~~v~vC 196 (224)
T cd06189 126 ---KRPIHLYWGARTEEDLYLDELLEAWAEAHP-NFTYVPVLSEPEEGWQGRTGLVHEAVLEDFP----D-LSDFDVYAC 196 (224)
T ss_pred ---CCCEEEEEecCChhhccCHHHHHHHHHhCC-CeEEEEEeCCCCcCCccccccHHHHHHhhcc----C-ccccEEEEE
Confidence 257999999999999999999999999887 9999999999877788888888877654321 1 145789999
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCHHHH
Q 017070 337 GLKGMMPGIQETLKRVAEQRGESWDQK 363 (378)
Q Consensus 337 Gp~~m~~~v~~~L~~~g~~~g~~~~~~ 363 (378)
||++|++++.+.|.+. |++.+.+
T Consensus 197 Gp~~m~~~~~~~l~~~----G~~~~~i 219 (224)
T cd06189 197 GSPEMVYAARDDFVEK----GLPEENF 219 (224)
T ss_pred CCHHHHHHHHHHHHHc----CCCHHHc
Confidence 9999999999998754 5554443
No 16
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=1.2e-39 Score=300.40 Aligned_cols=221 Identities=18% Similarity=0.203 Sum_probs=184.9
Q ss_pred CeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEE
Q 017070 95 PYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLC 174 (378)
Q Consensus 95 ~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~ 174 (378)
.++++|++++.++++ +++|+|+.++.+.|+||||+.|.++. ...|+|||+|.|.++ +.++|+
T Consensus 2 ~~~~~v~~i~~~~~~-----~~~l~l~~~~~~~~~pGQ~v~l~~~~---------~~~r~ySias~p~~~----~~l~~~ 63 (232)
T PRK08051 2 TLSCKVTSVEAITDT-----VYRVRLVPEAPFSFRAGQYLMVVMGE---------KDKRPFSIASTPREK----GFIELH 63 (232)
T ss_pred eeEEEEEEEecCCCC-----eEEEEEecCCCCccCCCCEEEEEcCC---------CcceeecccCCCCCC----CcEEEE
Confidence 478999999999998 99999998878899999999999865 257999999998642 779999
Q ss_pred EEEeeeecCCCCCCCCCCCCchhhHhh-cCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhcc
Q 017070 175 VRRAVYYDPESGKEDPSKSGICSNFLC-NSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMES 253 (378)
Q Consensus 175 Ir~~~~~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~ 253 (378)
|+.. ++|..+.++. ++++|++|.|.||+|.+++.++ ..+++|||||||||||+++|++++...+
T Consensus 64 v~~~-------------~~~~~~~~~~~~l~~G~~v~v~gP~G~~~~~~~--~~~~~vliagG~GiaP~~~~l~~~~~~~ 128 (232)
T PRK08051 64 IGAS-------------ELNLYAMAVMERILKDGEIEVDIPHGDAWLREE--SERPLLLIAGGTGFSYARSILLTALAQG 128 (232)
T ss_pred EEEc-------------CCCcchHHHHHHcCCCCEEEEEcCCCceEccCC--CCCcEEEEecCcCcchHHHHHHHHHHhC
Confidence 9987 6676666665 5999999999999999988652 4578999999999999999999998765
Q ss_pred CCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEE
Q 017070 254 VPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHI 333 (378)
Q Consensus 254 ~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~v 333 (378)
.. ++++|+|++|+.++++|.+||.+|+++++ +|+++++++++++.|.+..|++++.+.+.... ..+.+|
T Consensus 129 ~~-----~~v~l~~g~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~v 197 (232)
T PRK08051 129 PN-----RPITLYWGGREEDHLYDLDELEALALKHP-NLHFVPVVEQPEEGWQGKTGTVLTAVMQDFGS-----LAEYDI 197 (232)
T ss_pred CC-----CcEEEEEEeccHHHhhhhHHHHHHHHHCC-CcEEEEEeCCCCCCcccceeeehHHHHhhccC-----cccCEE
Confidence 32 57999999999999999999999999997 89999999998888888888887765432111 134689
Q ss_pred EEeCCCCcHHHHHHHH-HHHHHHcCCCHHHH
Q 017070 334 YFCGLKGMMPGIQETL-KRVAEQRGESWDQK 363 (378)
Q Consensus 334 yvCGp~~m~~~v~~~L-~~~g~~~g~~~~~~ 363 (378)
|+|||++|++++.+.| .+. |++.+++
T Consensus 198 yicGp~~m~~~v~~~l~~~~----G~~~~~i 224 (232)
T PRK08051 198 YIAGRFEMAKIARELFCRER----GAREEHL 224 (232)
T ss_pred EEECCHHHHHHHHHHHHHHc----CCCHHHe
Confidence 9999999999998887 654 5555544
No 17
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=1.3e-39 Score=308.94 Aligned_cols=236 Identities=24% Similarity=0.394 Sum_probs=186.6
Q ss_pred CCCeEEEEeEEEEecCCCCCCceEEEEeeCCCC--ccccCCcEEEEeCCCCC-------C-----------------CCC
Q 017070 93 KEPYTATIVSVERVVGAKAPGETCHIVIDHGGN--VPYWEGQSYGVIPPGEN-------P-----------------KKP 146 (378)
Q Consensus 93 ~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~--~~~~pGQ~v~l~~~~~~-------~-----------------~~~ 146 (378)
.+.++++|++++.+++| +++|+|+.+.. +.|+||||+.|.+++.. . ..+
T Consensus 7 ~~~~~~~v~~~~~~~~d-----~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (283)
T cd06188 7 AKKWECTVISNDNVATF-----IKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKH 81 (283)
T ss_pred cceEEEEEEEcccccch-----hhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhccccccccc
Confidence 35688999999999998 99999998765 78999999999987530 0 000
Q ss_pred CCCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCC
Q 017070 147 GNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNP 226 (378)
Q Consensus 147 g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~ 226 (378)
+. ...|+|||+|.|.+ .+.++|+||...... + ....++|.+|+||+++++|++|.|+||+|.|++.. .
T Consensus 82 ~~-~~~R~ySias~p~~----~~~l~l~vk~~~~~~---~-~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~~---~ 149 (283)
T cd06188 82 DE-PVSRAYSLANYPAE----EGELKLNVRIATPPP---G-NSDIPPGIGSSYIFNLKPGDKVTASGPFGEFFIKD---T 149 (283)
T ss_pred CC-ccccccCcCCCCCC----CCeEEEEEEEeccCC---c-cCCCCCceehhHHhcCCCCCEEEEECccccccccC---C
Confidence 11 24699999999864 378999999741000 0 00015799999999999999999999999998754 3
Q ss_pred CCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccc--cc
Q 017070 227 NATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQ--KN 304 (378)
Q Consensus 227 ~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~--~~ 304 (378)
.+++||||||||||||++|+++++..... .++++|+|++|+.++++|.++|++|+++++ +|++++++|++. +.
T Consensus 150 ~~~~vlIAgGtGItP~~s~l~~~~~~~~~----~~~v~l~~g~r~~~d~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~ 224 (283)
T cd06188 150 DREMVFIGGGAGMAPLRSHIFHLLKTLKS----KRKISFWYGARSLKELFYQEEFEALEKEFP-NFKYHPVLSEPQPEDN 224 (283)
T ss_pred CCcEEEEEecccHhHHHHHHHHHHhcCCC----CceEEEEEecCCHHHhhHHHHHHHHHHHCC-CeEEEEEECCCCccCC
Confidence 57999999999999999999998765432 257999999999999999999999999998 899999999865 56
Q ss_pred cCCCccchhHHHHhhHHHHHhcc--CCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 305 KKGGKMYVQDKIEEYSDEIFKRL--DGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 305 ~~~~~~~v~~~i~~~~~~l~~~~--~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
|.+..|++++.+.+.. .... ..+..||+|||++|++++.+.|.+.|
T Consensus 225 ~~~~~G~v~~~~~~~~---~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~G 272 (283)
T cd06188 225 WDGYTGFIHQVLLENY---LKKHPAPEDIEFYLCGPPPMNSAVIKMLDDLG 272 (283)
T ss_pred CCCcceeecHHHHHHH---hccCCCCCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 7778889888765432 1111 24568999999999999998887653
No 18
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=100.00 E-value=6.8e-39 Score=294.58 Aligned_cols=217 Identities=25% Similarity=0.439 Sum_probs=184.5
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCC--CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
++++|++++.++++ +++|+|+.+. .+.|+||||+.|.+++.. ..|+|||+|.|.+ +.++|
T Consensus 2 ~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--------~~r~ysi~s~~~~-----~~i~~ 63 (228)
T cd06209 2 FEATVTEVERLSDS-----TIGLTLELDEAGALAFLPGQYVNLQVPGTD--------ETRSYSFSSAPGD-----PRLEF 63 (228)
T ss_pred eeEEEEEEEEcCCC-----eEEEEEEcCCCCcCccCCCCEEEEEeCCCC--------cccccccccCCCC-----CeEEE
Confidence 57999999999998 9999999876 578999999999987632 5899999998853 68999
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhc
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFME 252 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~ 252 (378)
+||.. ++|.+|+||++ +++|++|.|+||+|.+++.+ ..++++||||||||||+++|++++...
T Consensus 64 ~i~~~-------------~~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~~---~~~~~vlia~GtGIaP~~~ll~~~~~~ 127 (228)
T cd06209 64 LIRLL-------------PGGAMSSYLRDRAQPGDRLTLTGPLGSFYLRE---VKRPLLMLAGGTGLAPFLSMLDVLAED 127 (228)
T ss_pred EEEEc-------------CCCcchhhHHhccCCCCEEEEECCcccceecC---CCCeEEEEEcccCHhHHHHHHHHHHhc
Confidence 99997 78999999998 99999999999999998754 347899999999999999999998776
Q ss_pred cCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeE
Q 017070 253 SVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAH 332 (378)
Q Consensus 253 ~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~ 332 (378)
.. .++++|+|++|+.++++|.++|++|.++++ +|++++++++++. |.+..+++++.+.+.. ....+..
T Consensus 128 ~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~-~~~~~g~v~~~~~~~~-----~~~~~~~ 195 (228)
T cd06209 128 GS-----AHPVHLVYGVTRDADLVELDRLEALAERLP-GFSFRTVVADPDS-WHPRKGYVTDHLEAED-----LNDGDVD 195 (228)
T ss_pred CC-----CCcEEEEEecCCHHHhccHHHHHHHHHhCC-CeEEEEEEcCCCc-cCCCcCCccHHHHHhh-----ccCCCcE
Confidence 53 257999999999999999999999999988 8999999998654 7777888887665421 0124568
Q ss_pred EEEeCCCCcHHHHHHHHHHHHHHcCCCHHH
Q 017070 333 IYFCGLKGMMPGIQETLKRVAEQRGESWDQ 362 (378)
Q Consensus 333 vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~ 362 (378)
||+|||++|++++++.|.+. |++.++
T Consensus 196 v~icGp~~m~~~~~~~l~~~----G~~~~~ 221 (228)
T cd06209 196 VYLCGPPPMVDAVRSWLDEQ----GIEPAN 221 (228)
T ss_pred EEEeCCHHHHHHHHHHHHHc----CCCHHH
Confidence 99999999999999999754 555443
No 19
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=7.9e-39 Score=294.89 Aligned_cols=215 Identities=24% Similarity=0.431 Sum_probs=181.5
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCC--CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
++++|++++.++++ +++|+|+.+. .+.|+||||+.|.+++.. ..|+|||+|.|.+. +.++|
T Consensus 1 ~~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--------~~r~ySi~s~~~~~----~~l~l 63 (232)
T cd06212 1 FVGTVVAVEALTHD-----IRRLRLRLEEPEPIKFFAGQYVDITVPGTE--------ETRSFSMANTPADP----GRLEF 63 (232)
T ss_pred CceEEEEEeecCCC-----eEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--------cccccccCCCCCCC----CEEEE
Confidence 46899999999998 9999998755 478999999999988632 68999999998643 78999
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhc
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFME 252 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~ 252 (378)
+||.. ++|.+|++|++ +++|++|.|.||+|.+++... ..+++|||||||||||+++|++++...
T Consensus 64 ~vk~~-------------~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~~--~~~~~l~iagG~Giap~~~~l~~~~~~ 128 (232)
T cd06212 64 IIKKY-------------PGGLFSSFLDDGLAVGDPVTVTGPYGTCTLRES--RDRPIVLIGGGSGMAPLLSLLRDMAAS 128 (232)
T ss_pred EEEEC-------------CCCchhhHHhhcCCCCCEEEEEcCcccceecCC--CCCcEEEEecCcchhHHHHHHHHHHhc
Confidence 99997 78999999997 999999999999999987652 467999999999999999999998876
Q ss_pred cCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccc--cccCCCccchhHHHHhhHHHHHhccCCC
Q 017070 253 SVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQ--KNKKGGKMYVQDKIEEYSDEIFKRLDGG 330 (378)
Q Consensus 253 ~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~--~~~~~~~~~v~~~i~~~~~~l~~~~~~~ 330 (378)
+. .++++|+|++|+.++++|.++|.+|+++++ +|+++++++++. ..|.+..+++++.+.+... .. .+
T Consensus 129 ~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~----~~-~~ 197 (232)
T cd06212 129 GS-----DRPVRFFYGARTARDLFYLEEIAALGEKIP-DFTFIPALSESPDDEGWSGETGLVTEVVQRNEA----TL-AG 197 (232)
T ss_pred CC-----CCcEEEEEeccchHHhccHHHHHHHHHhCC-CEEEEEEECCCCCCCCCcCCcccHHHHHHhhcc----Cc-cC
Confidence 53 257999999999999999999999998887 899999999864 4566677888775544221 11 45
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHH
Q 017070 331 AHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 331 ~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
..||+|||++|++++.+.|.+.|
T Consensus 198 ~~v~~CGp~~~~~~v~~~l~~~G 220 (232)
T cd06212 198 CDVYLCGPPPMIDAALPVLEMSG 220 (232)
T ss_pred CEEEEECCHHHHHHHHHHHHHcC
Confidence 78999999999999998887654
No 20
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=9.7e-39 Score=293.40 Aligned_cols=212 Identities=25% Similarity=0.413 Sum_probs=180.5
Q ss_pred EEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 97 TATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 97 ~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
+++|++++.++++ +++|+|+.+..+.|+||||+.|.+++.. ..|+|||+|.|.+ .+.++|+||
T Consensus 2 ~~~v~~~~~~t~~-----~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--------~~r~ysi~s~~~~----~~~l~~~vk 64 (227)
T cd06213 2 RGTIVAQERLTHD-----IVRLTVQLDRPIAYKAGQYAELTLPGLP--------AARSYSFANAPQG----DGQLSFHIR 64 (227)
T ss_pred eEEEEEEeecCCC-----EEEEEEecCCCCCcCCCCEEEEEeCCCC--------cccccccCCCCCC----CCEEEEEEE
Confidence 5899999999998 9999999887788999999999987632 5899999999864 378999999
Q ss_pred EeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCC
Q 017070 177 RAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVP 255 (378)
Q Consensus 177 ~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~ 255 (378)
.. ++|.+|++|++ +++||+|.|+||+|.|++.+ ..+++|||||||||||+++|++++...+.
T Consensus 65 ~~-------------~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~---~~~~~lliagG~GiaP~~~~~~~~~~~~~- 127 (227)
T cd06213 65 KV-------------PGGAFSGWLFGADRTGERLTVRGPFGDFWLRP---GDAPILCIAGGSGLAPILAILEQARAAGT- 127 (227)
T ss_pred EC-------------CCCcchHHHHhcCCCCCEEEEeCCCcceEeCC---CCCcEEEEecccchhHHHHHHHHHHhcCC-
Confidence 87 78999999976 99999999999999998754 34789999999999999999999876643
Q ss_pred CcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccc--cccCCCccchhHHHHhhHHHHHhccCCCeEE
Q 017070 256 TYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQ--KNKKGGKMYVQDKIEEYSDEIFKRLDGGAHI 333 (378)
Q Consensus 256 ~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~--~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~v 333 (378)
.++++|+|++|+.++++|.++|.++++++..+|+++.++|++. ..|.+..+++++.+.+.. ..+..|
T Consensus 128 ----~~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~~~~-------~~~~~v 196 (227)
T cd06213 128 ----KRDVTLLFGARTQRDLYALDEIAAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTEHIAEVL-------LAATEA 196 (227)
T ss_pred ----CCcEEEEEeeCCHHHhccHHHHHHHHHhccCCeEEEEEecCCCCCCCccCCcccHHHHHHhhc-------cCCCEE
Confidence 2579999999999999999999999987655899999998764 346677788877655422 256789
Q ss_pred EEeCCCCcHHHHHHHHHHHH
Q 017070 334 YFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 334 yvCGp~~m~~~v~~~L~~~g 353 (378)
|+|||++|++++.+.|.+.|
T Consensus 197 ~~CGp~~~~~~~~~~l~~~G 216 (227)
T cd06213 197 YLCGPPAMIDAAIAVLRALG 216 (227)
T ss_pred EEECCHHHHHHHHHHHHHcC
Confidence 99999999999998887653
No 21
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=2.6e-38 Score=293.10 Aligned_cols=237 Identities=27% Similarity=0.343 Sum_probs=191.2
Q ss_pred EEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEe
Q 017070 99 TIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRA 178 (378)
Q Consensus 99 ~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~ 178 (378)
+|++++.++++ +++|+|+.+..+.|+||||+.|.++..+ ....+|+|||+|.|.+ +.++|+|+++
T Consensus 1 ~v~~~~~~t~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~-----~~~~~R~ySi~s~~~~-----~~i~~~i~~~ 65 (241)
T cd06195 1 TVLKRRDWTDD-----LFSFRVTRDIPFRFQAGQFTKLGLPNDD-----GKLVRRAYSIASAPYE-----ENLEFYIILV 65 (241)
T ss_pred CeEEEEEcCCC-----EEEEEEcCCCCCccCCCCeEEEeccCCC-----CCeeeecccccCCCCC-----CeEEEEEEEe
Confidence 47899999998 9999999887788999999999987631 1146899999998854 6899999987
Q ss_pred eeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEE-eeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCc
Q 017070 179 VYYDPESGKEDPSKSGICSNFLCNSKPGDKVLIT-GPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTY 257 (378)
Q Consensus 179 ~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~ 257 (378)
++|.+|+||+++++|++|.+. ||+|.|.+.+. ...+++|||||||||||+++|++++.....
T Consensus 66 -------------~~G~~s~~l~~l~~Gd~v~v~~gP~G~f~~~~~-~~~~~~vlIagGtGiaP~~~~l~~~~~~~~--- 128 (241)
T cd06195 66 -------------PDGPLTPRLFKLKPGDTIYVGKKPTGFLTLDEV-PPGKRLWLLATGTGIAPFLSMLRDLEIWER--- 128 (241)
T ss_pred -------------cCCCCchHHhcCCCCCEEEECcCCCCceeecCC-CCCceEEEEeeccchhhHHHHHHHHHhhCC---
Confidence 789999999999999999999 99999877652 135799999999999999999999875432
Q ss_pred ccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHh-hHHHHHhc--cCCCeEEE
Q 017070 258 KFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEE-YSDEIFKR--LDGGAHIY 334 (378)
Q Consensus 258 ~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~-~~~~l~~~--~~~~~~vy 334 (378)
.++++|+|++|+.++++|.++|.+|+++++.+|++++++++++..| +..|++++.+.. .+.+.... ......||
T Consensus 129 --~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy 205 (241)
T cd06195 129 --FDKIVLVHGVRYAEELAYQDEIEALAKQYNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVM 205 (241)
T ss_pred --CCcEEEEEccCCHHHhhhHHHHHHHHhhcCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEE
Confidence 2679999999999999999999999988333899999999887766 567888876652 22222111 12467899
Q ss_pred EeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 335 FCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 335 vCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
+|||++|++++++.|.+.|+.... . .+-+|+|.|.|
T Consensus 206 iCGp~~m~~~~~~~l~~~G~~~~~----~----~~~~~~~~E~~ 241 (241)
T cd06195 206 LCGNPQMIDDTQELLKEKGFSKNH----R----RKPGNITVEKY 241 (241)
T ss_pred EeCCHHHHHHHHHHHHHcCCCccc----c----CCCceEEEecC
Confidence 999999999999999877654321 1 44578888876
No 22
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=2.3e-37 Score=305.05 Aligned_cols=215 Identities=30% Similarity=0.515 Sum_probs=178.9
Q ss_pred CCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCC
Q 017070 149 PHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNA 228 (378)
Q Consensus 149 ~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~ 228 (378)
+..+|+|||+|+|.. +++.++|+|+.+.|.++. +. .+.|.+|+||+++++|++|.+.+|.|.|.+.. +..+
T Consensus 161 ~l~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~-~~---~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp~--~~~~ 231 (382)
T cd06207 161 LIKPRYYSISSSPLK---NPNEVHLLVSLVSWKTPS-GR---SRYGLCSSYLAGLKVGQRVTVFIKKSSFKLPK--DPKK 231 (382)
T ss_pred CCCCceeeecCCCcC---CCCeEEEEEEEEEeeCCC-CC---eecccHHHHHhhcCCCCEEEEEEECCcccCCC--CCCC
Confidence 468999999999964 247899999997665542 22 26799999999999999999999999987754 3468
Q ss_pred cEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCC-CCcccHHHHHHHHhhCCCceEEEEEeeccccccCC
Q 017070 229 THIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANP-DSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKG 307 (378)
Q Consensus 229 ~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~-~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~ 307 (378)
|+||||+|||||||+||++++....... ...++++||||+|+. .+++|.+||++|.+.++ ++++++++||++.
T Consensus 232 plImIa~GtGIAP~rs~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~-~~~~~~a~Srd~~---- 305 (382)
T cd06207 232 PIIMVGPGTGLAPFRAFLQERAALLAQG-PEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGV-LTTLGTAFSRDQP---- 305 (382)
T ss_pred CEEEEcCCccHHHHHHHHHHHHHHhhcC-ccCCCEEEEECCCCCCccccHHHHHHHHHhCCC-CceEEEEecCCCC----
Confidence 9999999999999999999875431110 113789999999999 79999999999998876 8999999999754
Q ss_pred CccchhHHHHhhHHHHHhccCCC-eEEEEeCCCC-cHHHHHHHHHHHHHHcC----CCHHHHHHHHHHcCCeEEeeC
Q 017070 308 GKMYVQDKIEEYSDEIFKRLDGG-AHIYFCGLKG-MMPGIQETLKRVAEQRG----ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 308 ~~~~v~~~i~~~~~~l~~~~~~~-~~vyvCGp~~-m~~~v~~~L~~~g~~~g----~~~~~~~~~l~~~~r~~~e~~ 378 (378)
.++||++.+.+..+.+.+.+.++ +.||+|||+. |+++|++.|.+++.+.+ ..+++++++|+++|||++|||
T Consensus 306 ~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 306 KKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 37899999988766666655444 4899999998 99999999999998875 457789999999999999999
No 23
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=100.00 E-value=7.7e-38 Score=288.22 Aligned_cols=214 Identities=24% Similarity=0.327 Sum_probs=179.6
Q ss_pred EeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEee
Q 017070 100 IVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAV 179 (378)
Q Consensus 100 V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~ 179 (378)
|+++++++++ +++|+|+.+.++.|+||||+.|.+++.+ ..|+|||+|.|.+ .+.++|+||..
T Consensus 1 ~~~~~~~t~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--------~~r~ySi~s~~~~----~~~~~~~vk~~- 62 (232)
T cd06190 1 LVDVRELTHD-----VAEFRFALDGPADFLPGQYALLALPGVE--------GARAYSMANLANA----SGEWEFIIKRK- 62 (232)
T ss_pred CCceEEcCCC-----EEEEEEEcCCccccCCCCEEEEECCCCC--------cccCccCCcCCCC----CCEEEEEEEEc-
Confidence 4678899998 9999999988889999999999998632 5799999998864 37899999987
Q ss_pred eecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcc
Q 017070 180 YYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYK 258 (378)
Q Consensus 180 ~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~ 258 (378)
++|.+|.+|++ +++|++|.|+||+|.+++.+. ..+++|||||||||||+++|++++......
T Consensus 63 ------------~~G~~s~~l~~~~~~g~~v~v~gP~G~~~~~~~--~~~~illIagG~GiaP~~~~l~~~~~~~~~--- 125 (232)
T cd06190 63 ------------PGGAASNALFDNLEPGDELELDGPYGLAYLRPD--EDRDIVCIAGGSGLAPMLSILRGAARSPYL--- 125 (232)
T ss_pred ------------CCCcchHHHhhcCCCCCEEEEECCcccceecCC--CCCcEEEEeeCcCHHHHHHHHHHHHhcccC---
Confidence 78999999997 899999999999999987652 457999999999999999999998875211
Q ss_pred cCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeecccc----ccCCCccchhHHHHhhHHHHHhccCCCeEEE
Q 017070 259 FGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQK----NKKGGKMYVQDKIEEYSDEIFKRLDGGAHIY 334 (378)
Q Consensus 259 ~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~----~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vy 334 (378)
...+++|+|++|+.++++|.++|.+|.+.++ +|+++++++++.. .|.+..+++++.+.+... ....+..||
T Consensus 126 ~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~~~----~~~~~~~vy 200 (232)
T cd06190 126 SDRPVDLFYGGRTPSDLCALDELSALVALGA-RLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLG----DRLAEFEFY 200 (232)
T ss_pred CCCeEEEEEeecCHHHHhhHHHHHHHHHhCC-CEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhhcc----CCccccEEE
Confidence 1368999999999999999999999999876 8999999987653 377778888876654322 112467999
Q ss_pred EeCCCCcHHHHHHHHHHHH
Q 017070 335 FCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 335 vCGp~~m~~~v~~~L~~~g 353 (378)
+|||++|++++.+.|.+.|
T Consensus 201 iCGp~~m~~~v~~~l~~~g 219 (232)
T cd06190 201 FAGPPPMVDAVQRMLMIEG 219 (232)
T ss_pred EECCHHHHHHHHHHHHHhC
Confidence 9999999999999997764
No 24
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=100.00 E-value=2.1e-37 Score=288.25 Aligned_cols=223 Identities=21% Similarity=0.202 Sum_probs=175.8
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
..+.++|++++.++++ +++|+|+.+. ..|+||||+.|.++..+ . ...|+|||+|.|.+ +.++|
T Consensus 3 ~~~~~~V~~i~~~t~~-----v~~l~l~~~~-~~~~pGQfv~l~~~~~g-----~-~~~R~ySias~p~~-----~~l~~ 65 (248)
T PRK10926 3 DWVTGKVTKVQNWTDA-----LFSLTVHAPV-DPFTAGQFTKLGLEIDG-----E-RVQRAYSYVNAPDN-----PDLEF 65 (248)
T ss_pred ccEEEEEEEEEEcCCC-----eEEEEEeCCC-CCCCCCCEEEEEEecCC-----c-EEEeeecccCCCCC-----CeEEE
Confidence 3588999999999998 9999998753 37999999999875321 1 35799999999853 57999
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhcc
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMES 253 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~ 253 (378)
+||.+ ++|.+|+||+++++||+|.|+||.|.++..+.....+++|||||||||||++||++++...+
T Consensus 66 ~ik~~-------------~~G~~S~~L~~l~~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~ 132 (248)
T PRK10926 66 YLVTV-------------PEGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE 132 (248)
T ss_pred EEEEe-------------CCCCcChHHHhCCCCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC
Confidence 99998 88999999999999999999998755443331113479999999999999999999986544
Q ss_pred CCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHh-hHHHHHhc-c-CCC
Q 017070 254 VPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEE-YSDEIFKR-L-DGG 330 (378)
Q Consensus 254 ~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~-~~~~l~~~-~-~~~ 330 (378)
. .++++|+||+|+.++++|.++|++|+++++.+|+++.++|+++. +.+..|++++.+.+ .+...... . .++
T Consensus 133 ~-----~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~s~~~~-~~~~~G~v~~~i~~~~l~~~~~~~~~~~~ 206 (248)
T PRK10926 133 R-----FKNLVLVHAARYAADLSYLPLMQELEQRYEGKLRIQTVVSRETA-PGSLTGRVPALIESGELEAAVGLPMDAET 206 (248)
T ss_pred C-----CCcEEEEEeCCcHHHHHHHHHHHHHHHhCcCCEEEEEEECCCCC-CCCcCCccchhhhcchHHHHhcCCCCccC
Confidence 2 25799999999999999999999999988658999999998543 23346777765543 12221111 1 245
Q ss_pred eEEEEeCCCCcHHHHHHHHHHH
Q 017070 331 AHIYFCGLKGMMPGIQETLKRV 352 (378)
Q Consensus 331 ~~vyvCGp~~m~~~v~~~L~~~ 352 (378)
..+|+|||++|++++.+.|.+.
T Consensus 207 ~~vy~CGp~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 207 SHVMLCGNPQMVRDTQQLLKET 228 (248)
T ss_pred CEEEEECCHHHHHHHHHHHHHh
Confidence 7899999999999999988754
No 25
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=1e-37 Score=302.31 Aligned_cols=218 Identities=19% Similarity=0.309 Sum_probs=175.9
Q ss_pred CCCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEE
Q 017070 93 KEPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTAS 172 (378)
Q Consensus 93 ~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~ 172 (378)
.-++.++|++++.++++ ++.|+|+.++.+.|+||||+.|.+++.. ...|+|||+|.|.+. +.++
T Consensus 7 ~~~~~~~V~~i~~~t~~-----v~~l~l~~~~~~~f~pGQfv~l~~~~~~-------~~~R~ySias~p~~~----~~l~ 70 (332)
T PRK10684 7 QCPNRMQVHSIVQETPD-----VWTISLICHDFYPYRAGQYALVSIRNSA-------ETLRAYTLSSTPGVS----EFIT 70 (332)
T ss_pred CCceeEEEEEEEccCCC-----eEEEEEcCCCCCCcCCCCEEEEEecCCC-------EeeeeecccCCCCCC----CcEE
Confidence 35689999999999998 9999999877789999999999987532 257999999998642 6899
Q ss_pred EEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHh
Q 017070 173 LCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFM 251 (378)
Q Consensus 173 l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~ 251 (378)
|+||++ ++|.+|+||++ +++||+|.+.||+|.|++... ..+++|||||||||||+++|+++++.
T Consensus 71 i~Vk~~-------------~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~--~~~~~vliAgG~GItP~~sml~~~~~ 135 (332)
T PRK10684 71 LTVRRI-------------DDGVGSQWLTRDVKRGDYLWLSDAMGEFTCDDK--AEDKYLLLAAGCGVTPIMSMRRWLLK 135 (332)
T ss_pred EEEEEc-------------CCCcchhHHHhcCCCCCEEEEeCCccccccCCC--CCCcEEEEecCcCcchHHHHHHHHHh
Confidence 999998 88999999975 999999999999999887652 45799999999999999999999876
Q ss_pred ccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCC-CccchhHHHHhhHHHHHhccCCC
Q 017070 252 ESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKG-GKMYVQDKIEEYSDEIFKRLDGG 330 (378)
Q Consensus 252 ~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~-~~~~v~~~i~~~~~~l~~~~~~~ 330 (378)
... ..+++|+|++|+.++++|.+||.+|+++++ ++++++..+++. +.+ ..|++...+ +.+....+ .+
T Consensus 136 ~~~-----~~~v~l~y~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~--~~~~~~grl~~~~---l~~~~~~~-~~ 203 (332)
T PRK10684 136 NRP-----QADVQVIFNVRTPQDVIFADEWRQLKQRYP-QLNLTLVAENNA--TEGFIAGRLTREL---LQQAVPDL-AS 203 (332)
T ss_pred cCC-----CCCEEEEEeCCChHHhhhHHHHHHHHHHCC-CeEEEEEeccCC--CCCccccccCHHH---HHHhcccc-cC
Confidence 543 257999999999999999999999999998 888887766532 222 234443221 12211111 35
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHH
Q 017070 331 AHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 331 ~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
..+|+|||++|++++.+.|.+.|
T Consensus 204 ~~vyiCGP~~m~~~v~~~l~~~G 226 (332)
T PRK10684 204 RTVMTCGPAPYMDWVEQEVKALG 226 (332)
T ss_pred CEEEEECCHHHHHHHHHHHHHcC
Confidence 78999999999999988886653
No 26
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=1.1e-36 Score=314.66 Aligned_cols=269 Identities=32% Similarity=0.578 Sum_probs=222.0
Q ss_pred CCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCC-------------CC----------
Q 017070 90 YKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP-------------KK---------- 145 (378)
Q Consensus 90 ~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~-------------~~---------- 145 (378)
+....++.++|+.+++|++..+..++++|.|+.++ .+.|+||.++.|.+.+... +.
T Consensus 229 ~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~~~~~t 308 (597)
T TIGR01931 229 YSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIGGKTIP 308 (597)
T ss_pred ccCCCCeEEEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeCCCCcC
Confidence 44567899999999999998888899999999854 6899999999998765310 00
Q ss_pred ---------------------------------------------------------C-----------CCCCCceeccc
Q 017070 146 ---------------------------------------------------------P-----------GNPHNVRLYSI 157 (378)
Q Consensus 146 ---------------------------------------------------------~-----------g~~~~~R~ySi 157 (378)
+ -.+..+|+|||
T Consensus 309 l~~~l~~~~dl~~~~~~~l~~la~~~~~~~l~~~~~~~~~~~~y~~~~~~~dvl~~fp~~~~~gq~v~ll~~~~~R~YSI 388 (597)
T TIGR01931 309 LFEALITHFELTQNTKPLLKAYAELTGNKELKALIADNEKLKAYIQNTPLIDLIRDYPADLDAEQLISLLRPLTPRLYSI 388 (597)
T ss_pred HHHHHHhceeCCCCCHHHHHHHHHhcCCHHHHHHhcCHHHHHHHHcCCCHHHHHHHCCCCCCHHHHHHhCcccCCceeee
Confidence 0 01456899999
Q ss_pred ccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCC-CCCCCCCCCCCCcEEEEec
Q 017070 158 ASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSG-KIMLLPEDNPNATHIMIAT 235 (378)
Q Consensus 158 as~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G-~~~~~~~~~~~~~vv~IAg 235 (378)
+|+|... ++.++|+|+.+.|.. .+ ..+.|.+|+||++ +++|++|.|.+|.| .|.+.. ++..|+||||+
T Consensus 389 aSsp~~~---~~~l~ltV~~v~~~~--~~---~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~F~lp~--~~~~piImIg~ 458 (597)
T TIGR01931 389 SSSQSEV---GDEVHLTVGVVRYQA--HG---RARLGGASGFLAERLKEGDTVPVYIEPNDNFRLPE--DPDTPIIMIGP 458 (597)
T ss_pred ccCcccC---CCEEEEEEEEEEecC--CC---CccccchhHHHHhhCCCCCEEEEEEeeCCcccCCC--CCCCCEEEEcC
Confidence 9999642 478999999875532 12 2278999999998 99999999998665 566644 35689999999
Q ss_pred CCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecC-CCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhH
Q 017070 236 GTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVAN-PDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQD 314 (378)
Q Consensus 236 GtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~-~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~ 314 (378)
|||||||++|++++...+. .++++||||+|+ ..|++|.+||++|.+++. .++++.++||++ +.++||++
T Consensus 459 GTGIAPfrsflq~r~~~~~-----~g~~~LffG~R~~~~D~ly~~El~~~~~~~~-l~~l~~afSRd~----~~k~yVqd 528 (597)
T TIGR01931 459 GTGVAPFRAFMQERAEDGA-----KGKNWLFFGNPHFTTDFLYQVEWQNYLKKGV-LTKMDLAFSRDQ----AEKIYVQH 528 (597)
T ss_pred CcCchhHHHHHHHHHHccC-----CCCEEEEECCCCCCcchhHHHHHHHHHHcCC-CceeEEEEecCC----CCCccHHH
Confidence 9999999999998876653 268999999999 679999999999998876 788999999953 25799999
Q ss_pred HHHhhHHHHHhccCCCeEEEEeC-CCCcHHHHHHHHHHHHHHcC----CCHHHHHHHHHHcCCeEEeeC
Q 017070 315 KIEEYSDEIFKRLDGGAHIYFCG-LKGMMPGIQETLKRVAEQRG----ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 315 ~i~~~~~~l~~~~~~~~~vyvCG-p~~m~~~v~~~L~~~g~~~g----~~~~~~~~~l~~~~r~~~e~~ 378 (378)
++.+...++++++..+..||+|| |+.|+++|.++|.++..++| ..+++++++|+++|||+.|||
T Consensus 529 ~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 529 RIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred HHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99988888877766778999999 88999999999999988875 456789999999999999999
No 27
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=1.3e-37 Score=284.99 Aligned_cols=212 Identities=26% Similarity=0.391 Sum_probs=180.7
Q ss_pred EeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEee
Q 017070 100 IVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAV 179 (378)
Q Consensus 100 V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~ 179 (378)
|+++++++++ +++++|+.+..+.|+||||+.|.+++.. ...|+|||+|.|.+. +.++|+|+..
T Consensus 1 v~~~~~~~~~-----~~~~~l~~~~~~~~~pGq~i~l~~~~~~-------~~~r~ysi~s~~~~~----~~~~~~i~~~- 63 (224)
T cd06187 1 VVSVERLTHD-----IAVVRLQLDQPLPFWAGQYVNVTVPGRP-------RTWRAYSPANPPNED----GEIEFHVRAV- 63 (224)
T ss_pred CeeeeecCCC-----EEEEEEEeCCCCCcCCCceEEEEcCCCC-------CcceeccccCCCCCC----CEEEEEEEeC-
Confidence 5688899998 9999999888788999999999988642 257999999988642 6899999986
Q ss_pred eecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcc
Q 017070 180 YYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYK 258 (378)
Q Consensus 180 ~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~ 258 (378)
.+|.+|+||++ +++|++|.|.||+|.+++.+. ..+++|||||||||||+++|++++...+.
T Consensus 64 ------------~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~~--~~~~~lliagG~GI~p~~sll~~~~~~~~---- 125 (224)
T cd06187 64 ------------PGGRVSNALHDELKVGDRVRLSGPYGTFYLRRD--HDRPVLCIAGGTGLAPLRAIVEDALRRGE---- 125 (224)
T ss_pred ------------CCCcchHHHhhcCccCCEEEEeCCccceEecCC--CCCCEEEEecCcCHHHHHHHHHHHHhcCC----
Confidence 67999999998 999999999999999887652 35789999999999999999999886542
Q ss_pred cCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCC
Q 017070 259 FGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGL 338 (378)
Q Consensus 259 ~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp 338 (378)
.++++|+|++|+.++++|.++|.+|.++++ ++++++++++++..|.+.++++++.+.+... . ..++.||+|||
T Consensus 126 -~~~v~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~-~~~~~v~vcGp 198 (224)
T cd06187 126 -PRPVHLFFGARTERDLYDLEGLLALAARHP-WLRVVPVVSHEEGAWTGRRGLVTDVVGRDGP----D-WADHDIYICGP 198 (224)
T ss_pred -CCCEEEEEecCChhhhcChHHHHHHHHhCC-CeEEEEEeCCCCCccCCCcccHHHHHHHhcc----c-cccCEEEEECC
Confidence 257999999999999999999999999887 8999999988766677788898887765321 1 14678999999
Q ss_pred CCcHHHHHHHHHHHH
Q 017070 339 KGMMPGIQETLKRVA 353 (378)
Q Consensus 339 ~~m~~~v~~~L~~~g 353 (378)
++|++++++.|++.|
T Consensus 199 ~~~~~~v~~~l~~~G 213 (224)
T cd06187 199 PAMVDATVDALLARG 213 (224)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999987643
No 28
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=100.00 E-value=9.6e-38 Score=281.65 Aligned_cols=273 Identities=22% Similarity=0.352 Sum_probs=222.4
Q ss_pred cccccCCcCCccEEEEeeeeeecccceeecccccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-
Q 017070 46 DLKSRNPRLRNRYVVCMSVQQASKSKVAVSPLELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG- 124 (378)
Q Consensus 46 ~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~~~~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~- 124 (378)
+.++..+ |.+|+| |+..+.|+.|+ +++. +-..+.++++|+++...+.- |.++.+..|.
T Consensus 101 skrea~e---G~RLsC---Q~~Vk~dm~le---vpEe-------~fgvkkWectViSNdN~ATF-----IKEL~laip~g 159 (410)
T COG2871 101 SKREAKE---GWRLSC---QVNVKHDMDLE---VPEE-------VFGVKKWECTVISNDNKATF-----IKELKLAIPEG 159 (410)
T ss_pred hhhhhhc---cceEEE---Eecccccceee---chHH-------hcCccceeEEEEeCCchhhh-----hhhheeeCCCC
Confidence 4456666 999999 99999999998 4433 12236699999999998876 8888888764
Q ss_pred -CccccCCcEEEEeCCCCCCC-----------------------CCCCCCCceecccccCCCCCCCCCCEEEEEEEEeee
Q 017070 125 -NVPYWEGQSYGVIPPGENPK-----------------------KPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVY 180 (378)
Q Consensus 125 -~~~~~pGQ~v~l~~~~~~~~-----------------------~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~ 180 (378)
.++|+||-|++|..|..... ........|.||+||.|.+. +.+.|.||..
T Consensus 160 ~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPeE~----giI~~NvRIA-- 233 (410)
T COG2871 160 EEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPEEK----GIIKLNVRIA-- 233 (410)
T ss_pred CccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChhhc----CeEEEEEEec--
Confidence 58999999999988743211 11122368999999999874 8899999986
Q ss_pred ecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccC
Q 017070 181 YDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFG 260 (378)
Q Consensus 181 ~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~ 260 (378)
+|+...+ ..|.|.+|.|+..|+|||+|.|+||+|.||... .++++|||+||.|.||++|.+-+.+++.+. .
T Consensus 234 -tPPp~~~-~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaKd---tdaemvFigGGAGmapmRSHIfDqL~rlhS----k 304 (410)
T COG2871 234 -TPPPRNP-DAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKD---TDAEMVFIGGGAGMAPMRSHIFDQLKRLHS----K 304 (410)
T ss_pred -cCCCCCC-CCCccceeeeEEeecCCCeEEEeccchhhhhcc---CCCceEEEecCcCcCchHHHHHHHHHhhcc----c
Confidence 3433333 348899999999999999999999999998875 579999999999999999999888777654 3
Q ss_pred CeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccc--cccCCCccchhHHHHh-hHHHHHhccCCCeEEEEeC
Q 017070 261 GLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQ--KNKKGGKMYVQDKIEE-YSDEIFKRLDGGAHIYFCG 337 (378)
Q Consensus 261 ~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~--~~~~~~~~~v~~~i~~-~~~~l~~~~~~~~~vyvCG 337 (378)
+++.+.||+|+..+.+|.+++++|++++| ||++|.++|++. ++|.+..++++..+.+ +++++ ..+++..+|+||
T Consensus 305 Rkis~WYGARS~rE~fY~Ed~d~L~ae~p-NF~wH~aLSdplpEDnW~g~TgFihnv~~en~Lk~h--~aPEDceyYmCG 381 (410)
T COG2871 305 RKISFWYGARSLREMFYQEDFDQLQAENP-NFHWHLALSDPLPEDNWDGYTGFIHNVLYENYLKDH--EAPEDCEYYMCG 381 (410)
T ss_pred ceeeeeeccchHHHhHHHHHHHHHHhhCC-CcEEEEEecCCCCcCCcccchhHHHHHHHhhhhhcC--CCchheeEEeeC
Confidence 78999999999999999999999999999 999999999865 4899988999887754 22221 113788999999
Q ss_pred CCCcHHHHHHHHHHHHHHcC
Q 017070 338 LKGMMPGIQETLKRVAEQRG 357 (378)
Q Consensus 338 p~~m~~~v~~~L~~~g~~~g 357 (378)
||-|..+|.+.|.++|+++.
T Consensus 382 Pp~mNasvikmL~dlGVE~e 401 (410)
T COG2871 382 PPLMNASVIKMLKDLGVERE 401 (410)
T ss_pred cchhhHHHHHHHHhcCcccc
Confidence 99999999999999987653
No 29
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=2.4e-36 Score=298.08 Aligned_cols=266 Identities=27% Similarity=0.439 Sum_probs=211.3
Q ss_pred EEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCC-----------------------------------
Q 017070 99 TIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENP----------------------------------- 143 (378)
Q Consensus 99 ~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~----------------------------------- 143 (378)
+|++++++|+..+..+++++.|+.+..+.|+||.++.|.+.+...
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~~~~~p~~~~~t 80 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPDGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGSATGLPLGTPIS 80 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCCCCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCCCCCCCCCCCEE
Confidence 477889999888888999999999878899999999997654221
Q ss_pred ---------CCCC---------------------------------------------------------------CCCC
Q 017070 144 ---------KKPG---------------------------------------------------------------NPHN 151 (378)
Q Consensus 144 ---------~~~g---------------------------------------------------------------~~~~ 151 (378)
+..+ .+..
T Consensus 81 l~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~d~l~~f~s~~~~~~~~l~~~p~l~ 160 (384)
T cd06206 81 VSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLAGEAYAAEVLAKRVSVLDLLERFPSIALPLATFLAMLPPMR 160 (384)
T ss_pred HHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhhhhHHHHHHHhcCCCHHHHHHhCCCCCCCHHHHHHhCcccC
Confidence 0000 1346
Q ss_pred ceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEE--EeeCCCCCCCCCCCCCCc
Q 017070 152 VRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLI--TGPSGKIMLLPEDNPNAT 229 (378)
Q Consensus 152 ~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v--~GP~G~~~~~~~~~~~~~ 229 (378)
+|+|||+|+|... ++.++|+|+.+.+..+..+. .+.|.+|+||+++++|++|.+ .+|.|.|.+.. +..++
T Consensus 161 ~R~YSIaSsp~~~---~~~i~l~v~v~~~~~~~~~~---~~~G~~S~~L~~l~~Gd~v~v~i~~p~g~F~l~~--~~~~p 232 (384)
T cd06206 161 PRQYSISSSPLVD---PGHATLTVSVLDAPALSGQG---RYRGVASSYLSSLRPGDSIHVSVRPSHSAFRPPS--DPSTP 232 (384)
T ss_pred CcceeeccCccCC---CCeEEEEEEEEEeecCCCCc---eeeeehHHHHhhCCCCCeEEEEEecCCCccCCCC--CCCCC
Confidence 8999999999642 36788888876443221111 157999999999999999985 58999988765 24689
Q ss_pred EEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCC-CCcccHHHHHHHHhhCCCceEEEEEeeccccccCCC
Q 017070 230 HIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANP-DSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGG 308 (378)
Q Consensus 230 vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~-~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~ 308 (378)
+||||||||||||++|++++....... ...++++||||+|+. .+++|.+||++|++. + ++++++++||++.. .
T Consensus 233 iImIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~-~~~l~~a~Sr~~~~---~ 306 (384)
T cd06206 233 LIMIAAGTGLAPFRGFLQERAALLAQG-RKLAPALLFFGCRHPDHDDLYRDELEEWEAA-G-VVSVRRAYSRPPGG---G 306 (384)
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHHhcC-CCcCCEEEEEeCCCCCcccchHHHHHHHHHC-C-CeEEEEEecccCCC---C
Confidence 999999999999999999876432110 012579999999999 799999999999874 3 89999999987542 3
Q ss_pred ccchhHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHHHHcC--------CCHHHHHHHHHHcCCeEEeeC
Q 017070 309 KMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVAEQRG--------ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 309 ~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g--------~~~~~~~~~l~~~~r~~~e~~ 378 (378)
++|+++.+.+..+++++.+.+++.||+|||++|++++.+.|.+++.+.+ .++++++++|+++|||++|||
T Consensus 307 ~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gry~~dvw 384 (384)
T cd06206 307 CRYVQDRLWAEREEVWELWEQGARVYVCGDGRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGRYATDVF 384 (384)
T ss_pred CEechhhHHhhHHHHHHHHHCCcEEEEECCCchHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 6899999987777766655577899999999999999999999998865 456789999999999999999
No 30
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=3.1e-37 Score=283.79 Aligned_cols=214 Identities=20% Similarity=0.361 Sum_probs=176.3
Q ss_pred EEeEEEEecCCCCCCceEEEEeeCCCC--ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 99 TIVSVERVVGAKAPGETCHIVIDHGGN--VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 99 ~V~~~~~lt~~~~~~~v~~l~l~~~~~--~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
+|+++++++++ +++|+|+.+.. +.|+||||+.|.++..+. ...|+|||+|.|.+ .+.++|+||
T Consensus 2 ~v~~~~~~t~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~------~~~R~ySi~s~~~~----~~~l~~~vk 66 (231)
T cd06215 2 RCVKIIQETPD-----VKTFRFAAPDGSLFAYKPGQFLTLELEIDGE------TVYRAYTLSSSPSR----PDSLSITVK 66 (231)
T ss_pred eEEEEEEcCCC-----eEEEEEECCCCCcCCcCCCCeEEEEEecCCC------eEEEeeecccCCCC----CCcEEEEEE
Confidence 78999999998 99999999876 789999999999864221 24799999999864 367999999
Q ss_pred EeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCC
Q 017070 177 RAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVP 255 (378)
Q Consensus 177 ~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~ 255 (378)
.. ++|.+|.||++ +++|++|.|+||+|.|.+.. ...+++|||||||||||+++|++++...+.
T Consensus 67 ~~-------------~~G~~s~~l~~~~~~G~~v~i~gP~G~f~~~~--~~~~~~vlIagG~Giap~~~~l~~~~~~~~- 130 (231)
T cd06215 67 RV-------------PGGLVSNWLHDNLKVGDELWASGPAGEFTLID--HPADKLLLLSAGSGITPMMSMARWLLDTRP- 130 (231)
T ss_pred Ec-------------CCCcchHHHHhcCCCCCEEEEEcCcceeEeCC--CCCCcEEEEecCcCcchHHHHHHHHHhcCC-
Confidence 87 77999999974 99999999999999987754 236899999999999999999999886643
Q ss_pred CcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccc-cCCCccchhHHHHhhHHHHHhccCCCeEEE
Q 017070 256 TYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKN-KKGGKMYVQDKIEEYSDEIFKRLDGGAHIY 334 (378)
Q Consensus 256 ~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~-~~~~~~~v~~~i~~~~~~l~~~~~~~~~vy 334 (378)
.++++|+|++|+.++++|.++|++|+++++ ++++++++++++.. |.+..|++...+. .++.... .+..||
T Consensus 131 ----~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~l---~~~~~~~-~~~~v~ 201 (231)
T cd06215 131 ----DADIVFIHSARSPADIIFADELEELARRHP-NFRLHLILEQPAPGAWGGYRGRLNAELL---ALLVPDL-KERTVF 201 (231)
T ss_pred ----CCcEEEEEecCChhhhhHHHHHHHHHHHCC-CeEEEEEEccCCCCcccccCCcCCHHHH---HHhcCCc-cCCeEE
Confidence 257999999999999999999999999887 89999999987664 6666677754222 1111111 346899
Q ss_pred EeCCCCcHHHHHHHHHHH
Q 017070 335 FCGLKGMMPGIQETLKRV 352 (378)
Q Consensus 335 vCGp~~m~~~v~~~L~~~ 352 (378)
+|||++|++++++.|.+.
T Consensus 202 icGp~~m~~~~~~~l~~~ 219 (231)
T cd06215 202 VCGPAGFMKAVKSLLAEL 219 (231)
T ss_pred EECCHHHHHHHHHHHHHc
Confidence 999999999999888654
No 31
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=100.00 E-value=4.9e-37 Score=300.05 Aligned_cols=224 Identities=18% Similarity=0.315 Sum_probs=179.2
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCC----ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGN----VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTA 171 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~----~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l 171 (378)
+..+|++++.++++ +++|+|+.+.. +.|+||||+.|.++..+ ....|+|||+|.|.+ +.+
T Consensus 2 ~~~~V~~i~~~t~~-----~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g------~~~~R~ySi~s~p~~-----~~l 65 (352)
T TIGR02160 2 HRLTVAEVERLTAD-----AVAISFEIPDELAEDYRFAPGQHLTLRREVDG------EELRRSYSICSAPAP-----GEI 65 (352)
T ss_pred eEeEEEEEEecCCC-----eEEEEEeCCccccccCCCCCCCeEEEEEecCC------cEeeeeccccCCCCC-----CcE
Confidence 56899999999998 99999997642 58999999999875321 135799999998843 689
Q ss_pred EEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHH
Q 017070 172 SLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMF 250 (378)
Q Consensus 172 ~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~ 250 (378)
+|+||++ ++|.+|.||++ +++||+|.|.||+|.|++.+.....+++|||||||||||+++|+++++
T Consensus 66 ~i~vk~~-------------~~G~~S~~l~~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~ 132 (352)
T TIGR02160 66 RVAVKKI-------------PGGLFSTWANDEIRPGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVL 132 (352)
T ss_pred EEEEEEe-------------CCCcchHHHHhcCCCCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHH
Confidence 9999998 78999999975 999999999999999887653222478999999999999999999987
Q ss_pred hccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchh-HHHHhhHHHHHhccCC
Q 017070 251 MESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQ-DKIEEYSDEIFKRLDG 329 (378)
Q Consensus 251 ~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~-~~i~~~~~~l~~~~~~ 329 (378)
..+. .++++|+|++|+.++++|.+||++|++.++.+|++++++|++...|.+..+.+. +.+.+.+.++.. ...
T Consensus 133 ~~~~-----~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~-~~~ 206 (352)
T TIGR02160 133 AAEP-----RSTFTLVYGNRRTASVMFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLID-VDR 206 (352)
T ss_pred hcCC-----CceEEEEEEeCCHHHHHHHHHHHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccC-ccc
Confidence 7543 257999999999999999999999998887669999999987665544444442 233333333211 124
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHH
Q 017070 330 GAHIYFCGLKGMMPGIQETLKRVAE 354 (378)
Q Consensus 330 ~~~vyvCGp~~m~~~v~~~L~~~g~ 354 (378)
...||+|||++|++++++.|.+.|.
T Consensus 207 ~~~vyiCGp~~m~~~v~~~L~~~Gv 231 (352)
T TIGR02160 207 ADEWFLCGPQAMVDDAEQALTGLGV 231 (352)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC
Confidence 5689999999999999999977644
No 32
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=4.6e-37 Score=300.42 Aligned_cols=224 Identities=34% Similarity=0.558 Sum_probs=187.0
Q ss_pred CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-C
Q 017070 125 NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-S 203 (378)
Q Consensus 125 ~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l 203 (378)
...+.+|||+.+..+. .+|+|||+|+|... ++.++|+|+.+.|..+ + ..+.|.+|+||++ +
T Consensus 129 ~~~~~~gq~l~l~~~~----------~~R~YSIaSsp~~~---~~~i~l~v~~v~~~~~--~---~~~~G~~S~~L~~~~ 190 (360)
T cd06199 129 PARLTAEELLDLLRPL----------QPRLYSIASSPKAV---PDEVHLTVAVVRYESH--G---RERKGVASTFLADRL 190 (360)
T ss_pred CCCCCHHHHHHhCcCC----------CCcceeeccCcccC---CCeEEEEEEEeeecCC--C---CccceehhHHHHhcC
Confidence 4678999999997653 68999999999642 4789999998654332 1 1267999999998 5
Q ss_pred CCCCEEEEEeeCC-CCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCC-CCcccHHHH
Q 017070 204 KPGDKVLITGPSG-KIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANP-DSLLYDDEF 281 (378)
Q Consensus 204 ~~Gd~v~v~GP~G-~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~-~~~~~~del 281 (378)
++|++|.+.+|.| .|.+.. +...|+||||+|||||||+||+++...... .++++||||+|+. .|++|.+||
T Consensus 191 ~~Gd~v~v~~~~~~~F~lp~--~~~~piImIa~GtGIAP~~s~l~~~~~~~~-----~~~~~L~~G~R~~~~D~~y~~el 263 (360)
T cd06199 191 KEGDTVPVFVQPNPHFRLPE--DPDAPIIMVGPGTGIAPFRAFLQEREATGA-----KGKNWLFFGERHFATDFLYQDEL 263 (360)
T ss_pred CCCCEEEEEEecCCCcCCCC--CCCCCEEEEecCcChHHHHHHHHHHHhccC-----CCcEEEEEcCCCCccchhHHHHH
Confidence 7999999998554 676654 346899999999999999999998775543 2679999999997 699999999
Q ss_pred HHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCC-CcHHHHHHHHHHHHHHcC---
Q 017070 282 TKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLK-GMMPGIQETLKRVAEQRG--- 357 (378)
Q Consensus 282 ~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~g--- 357 (378)
++|.+.+. +++++.++||++. .++||++.+.+..+++++.+..++.||+|||+ .|+++|+++|.++..+.+
T Consensus 264 ~~~~~~~~-~~~~~~a~Sr~~~----~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~ 338 (360)
T cd06199 264 QQWLKDGV-LTRLDTAFSRDQA----EKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMD 338 (360)
T ss_pred HHHHHcCC-CeEEEEEEccCCC----CCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCC
Confidence 99998876 8999999999753 46899999988877776666567899999999 899999999999987754
Q ss_pred -CCHHHHHHHHHHcCCeEEeeC
Q 017070 358 -ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 358 -~~~~~~~~~l~~~~r~~~e~~ 378 (378)
.++++++++|+++|||++|||
T Consensus 339 ~~~a~~~~~~l~~~~Ry~~dvw 360 (360)
T cd06199 339 EEEAEAYLKELKKEKRYQRDVY 360 (360)
T ss_pred HHHHHHHHHHHHHcCCeeeecC
Confidence 456789999999999999999
No 33
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=100.00 E-value=3.7e-37 Score=283.60 Aligned_cols=220 Identities=21% Similarity=0.354 Sum_probs=178.2
Q ss_pred EEeEEEEecCCCCCCceEEEEeeCCCC--ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 99 TIVSVERVVGAKAPGETCHIVIDHGGN--VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 99 ~V~~~~~lt~~~~~~~v~~l~l~~~~~--~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
+|++++.++++ +++|+|+.++. +.|+||||+.|.++..+. ..+|+|||+|.|.. +.++|+||
T Consensus 2 ~v~~i~~~t~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~------~~~r~ySi~s~~~~-----~~l~~~v~ 65 (231)
T cd06191 2 RVAEVRSETPD-----AVTIVFAVPGPLQYGFRPGQHVTLKLDFDGE------ELRRCYSLCSSPAP-----DEISITVK 65 (231)
T ss_pred EEEEEEecCCC-----cEEEEEeCCCCCCCCCCCCCeEEEEEecCCe------EEeeeeeccCCCCC-----CeEEEEEE
Confidence 68999999998 99999998764 589999999998753221 35799999998852 78999999
Q ss_pred EeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCC
Q 017070 177 RAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVP 255 (378)
Q Consensus 177 ~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~ 255 (378)
.+ ++|.+|+||++ +++||+|.|+||+|.|.+.+. ..+++|||||||||||+++|++++.....
T Consensus 66 ~~-------------~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~~--~~~~~lliagG~Gitp~~s~~~~~~~~~~- 129 (231)
T cd06191 66 RV-------------PGGRVSNYLREHIQPGMTVEVMGPQGHFVYQPQ--PPGRYLLVAAGSGITPLMAMIRATLQTAP- 129 (231)
T ss_pred EC-------------CCCccchHHHhcCCCCCEEEEeCCccceEeCCC--CCCcEEEEecCccHhHHHHHHHHHHhcCC-
Confidence 97 78999999985 999999999999999887652 45789999999999999999999876543
Q ss_pred CcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccc--cccCCCccchhHHHHhhHHHHHhccCCCeEE
Q 017070 256 TYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQ--KNKKGGKMYVQDKIEEYSDEIFKRLDGGAHI 333 (378)
Q Consensus 256 ~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~--~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~v 333 (378)
.++++|+|++|+.++++|.+||++|+++++ ++++++++++++ ..|.+.++++.+.+.+. +... .....|
T Consensus 130 ----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~---~~~~-~~~~~v 200 (231)
T cd06191 130 ----ESDFTLIHSARTPADMIFAQELRELADKPQ-RLRLLCIFTRETLDSDLLHGRIDGEQSLGAA---LIPD-RLEREA 200 (231)
T ss_pred ----CCCEEEEEecCCHHHHhHHHHHHHHHHhCC-CeEEEEEECCCCCCccccCCcccccHHHHHH---hCcc-ccCCeE
Confidence 257999999999999999999999998887 999999999864 35666666666544331 1111 135789
Q ss_pred EEeCCCCcHHHHHHHHHHHHHHcCCCHHHH
Q 017070 334 YFCGLKGMMPGIQETLKRVAEQRGESWDQK 363 (378)
Q Consensus 334 yvCGp~~m~~~v~~~L~~~g~~~g~~~~~~ 363 (378)
|+|||++|++++++.|.+ .|++.+++
T Consensus 201 yicGp~~mv~~~~~~l~~----~G~~~~~i 226 (231)
T cd06191 201 FICGPAGMMDAVETALKE----LGMPPERI 226 (231)
T ss_pred EEECCHHHHHHHHHHHHH----cCCCHHHe
Confidence 999999999999988865 45554443
No 34
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=6.4e-36 Score=307.73 Aligned_cols=270 Identities=32% Similarity=0.557 Sum_probs=223.3
Q ss_pred CCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCC-CCccccCCcEEEEeCCCCCC-------------C----------
Q 017070 89 LYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPGENP-------------K---------- 144 (378)
Q Consensus 89 ~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~-~~~~~~pGQ~v~l~~~~~~~-------------~---------- 144 (378)
.+....++.++|+.+++||+..+..++++|.|+.. ..+.|+||.++.|.+.+... +
T Consensus 231 ~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~~~~ 310 (600)
T PRK10953 231 PYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTL 310 (600)
T ss_pred CCCCCCCeEEEEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCCCCC
Confidence 34556789999999999999888899999999985 46899999999997764210 0
Q ss_pred -----------C----------------------------------------------C-----------CCCCCceecc
Q 017070 145 -----------K----------------------------------------------P-----------GNPHNVRLYS 156 (378)
Q Consensus 145 -----------~----------------------------------------------~-----------g~~~~~R~yS 156 (378)
. + -.+..+|+||
T Consensus 311 tl~~~l~~~~dl~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~dvL~~f~~~~~~~q~l~ll~~l~pR~YS 390 (600)
T PRK10953 311 PLAEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAALQHYAATTPIVDMVRFAPAQLDAEQLIGLLRPLTPRLYS 390 (600)
T ss_pred CHHHHHHHhcccCCCcHHHHHHHHHhCCCHHHHHHhcCHHHHHHHhcCCCHHHHHHhCCCCCCHHHHHHhCCCCCCeeee
Confidence 0 0 0245789999
Q ss_pred cccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCC-CCCCCCCCCCCCcEEEEe
Q 017070 157 IASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSG-KIMLLPEDNPNATHIMIA 234 (378)
Q Consensus 157 ias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G-~~~~~~~~~~~~~vv~IA 234 (378)
|+|+|.. .++.++|+|+.+.|.. .+. .+.|.+|.||.+ +++|++|.|.+|.| .|.+.. ++..|+||||
T Consensus 391 IaSsp~~---~~~~v~ltv~~v~~~~--~g~---~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~F~lp~--~~~~piImIg 460 (600)
T PRK10953 391 IASSQAE---VENEVHITVGVVRYDI--EGR---ARAGGASSFLADRLEEEGEVRVFIEHNDNFRLPA--NPETPVIMIG 460 (600)
T ss_pred cccCCCC---CCCeEEEEEEEEEeec--CCC---CcCceEhhhhhhcCCCCCEEEEEeccCCcccCCC--CCCCCEEEEe
Confidence 9999964 2478999998765542 222 268999999997 99999999999886 565543 3578999999
Q ss_pred cCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecC-CCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchh
Q 017070 235 TGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVAN-PDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQ 313 (378)
Q Consensus 235 gGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~-~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~ 313 (378)
+|||||||++|++++...+. .+++|||||+|+ ..|++|.+||++|.+.+. ..+++.++||++. .++|||
T Consensus 461 ~GTGIAPfrsflq~r~~~~~-----~~~~~LffG~R~~~~D~lY~~El~~~~~~g~-l~~l~~afSRd~~----~k~YVQ 530 (600)
T PRK10953 461 PGTGIAPFRAFMQQRAADGA-----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGL-LTRIDLAWSRDQK----EKIYVQ 530 (600)
T ss_pred cCcCcHHHHHHHHHHHHcCC-----CCCeEEEeeccCCccchhHHHHHHHHHHcCC-cceEEEEECCCCC----CCCcHH
Confidence 99999999999998876543 268999999999 569999999999999876 6779999999863 578999
Q ss_pred HHHHhhHHHHHhccCCCeEEEEeCCC-CcHHHHHHHHHHHHHHcC----CCHHHHHHHHHHcCCeEEeeC
Q 017070 314 DKIEEYSDEIFKRLDGGAHIYFCGLK-GMMPGIQETLKRVAEQRG----ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 314 ~~i~~~~~~l~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~g----~~~~~~~~~l~~~~r~~~e~~ 378 (378)
++|.+..+++++++.++..||+||+. .|.++|+++|.++..++| ..+++++++|+++|||+.|||
T Consensus 531 ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 531 DKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred HHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99999999999888888999999996 588999999999988765 446689999999999999999
No 35
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=1e-35 Score=300.58 Aligned_cols=269 Identities=32% Similarity=0.517 Sum_probs=217.6
Q ss_pred CCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCC-------------C----------
Q 017070 89 LYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP-------------K---------- 144 (378)
Q Consensus 89 ~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~-------------~---------- 144 (378)
.+....++.++|+++++||+..+..++++|+|+.++ .+.|+||.++.|.+.+... +
T Consensus 162 ~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~~~tlr~ 241 (530)
T PRK06214 162 GTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPIGGKTLRE 241 (530)
T ss_pred ccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCccCCccHHH
Confidence 345668899999999999998888899999999864 6899999999997654310 0
Q ss_pred ---------------------------------------CC----------------C------------CCCCceeccc
Q 017070 145 ---------------------------------------KP----------------G------------NPHNVRLYSI 157 (378)
Q Consensus 145 ---------------------------------------~~----------------g------------~~~~~R~ySi 157 (378)
.. + .+..+|+|||
T Consensus 242 ~L~~~~Dl~~~p~~~~~~la~~~~~~~~~~l~~L~~~~~~~~~~~~~~vldvL~~fp~~~~~~~~lle~lp~l~pR~YSI 321 (530)
T PRK06214 242 ALLEDVSLGPAPDGLFELLSYITGGAARKKARALAAGEDPDGDAATLDVLAALEKFPGIRPDPEAFVEALDPLQPRLYSI 321 (530)
T ss_pred HHHHheeccCCCHHHHHHHHHhCCcHHHHHHHHhhcccChhhhhhhCcHHHHHHhCCCCCCCHHHHHhhcCCCCcEEEEe
Confidence 00 0 2457899999
Q ss_pred ccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEe--eCCCCCCCCCCCCCCcEEEEe
Q 017070 158 ASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITG--PSGKIMLLPEDNPNATHIMIA 234 (378)
Q Consensus 158 as~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~G--P~G~~~~~~~~~~~~~vv~IA 234 (378)
+|+|.. +++.++|+|+.+.|... + ..+.|.+|+||++ +++|++|.+.+ |.| |.+.. +...++||||
T Consensus 322 SSsP~~---~~~~i~ltV~~V~~~~~--~---~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~g-F~lp~--~~~~PiImIg 390 (530)
T PRK06214 322 SSSPKA---TPGRVSLTVDAVRYEIG--S---RLRLGVASTFLGERLAPGTRVRVYVQKAHG-FALPA--DPNTPIIMVG 390 (530)
T ss_pred ccCCcC---CCCEEEEEEEEEeeccC--C---ccccchhhHHHHhcCCCCCEEEEEecCCCC-CccCC--CCCCCEEEEc
Confidence 999964 24789999998755421 1 2267999999985 99999999875 445 66543 3467999999
Q ss_pred cCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCC-CCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchh
Q 017070 235 TGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANP-DSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQ 313 (378)
Q Consensus 235 gGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~-~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~ 313 (378)
+|||||||+||+++...... .++++||||+|+. .|++|.+||++|.+.+. ++++++++||++. .++||+
T Consensus 391 ~GTGIAPfrsfLq~r~~~~~-----~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~-l~~l~~afSRd~~----~k~YVQ 460 (530)
T PRK06214 391 PGTGIAPFRAFLHERAATKA-----PGRNWLFFGHQRSATDFFYEDELNGLKAAGV-LTRLSLAWSRDGE----EKTYVQ 460 (530)
T ss_pred CCeeHHHHHHHHHHHHHhcC-----CCCeEEEEEecCChhhhHHHHHHHHHHHhCC-ceEEEEEEecCCC----CCCchh
Confidence 99999999999998765432 2679999999764 58999999999998876 7889999999753 468999
Q ss_pred HHHHhhHHHHHhccCCCeEEEEeCCCC-cHHHHHHHHHHHHHHcC----CCHHHHHHHHHHcCCeEEeeC
Q 017070 314 DKIEEYSDEIFKRLDGGAHIYFCGLKG-MMPGIQETLKRVAEQRG----ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 314 ~~i~~~~~~l~~~~~~~~~vyvCGp~~-m~~~v~~~L~~~g~~~g----~~~~~~~~~l~~~~r~~~e~~ 378 (378)
++|.+...++++++.++.+||+|||.. |.++|+++|.++..++| .++++++++|+++|||++|||
T Consensus 461 ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY~~Dvw 530 (530)
T PRK06214 461 DRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRYQADVY 530 (530)
T ss_pred hHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 999988888887777788999999976 66999999999988765 345679999999999999999
No 36
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=100.00 E-value=1.2e-36 Score=278.41 Aligned_cols=215 Identities=24% Similarity=0.437 Sum_probs=174.2
Q ss_pred EeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEee
Q 017070 100 IVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAV 179 (378)
Q Consensus 100 V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~ 179 (378)
|++++.++++ +++|+|+.+..+.|+||||+.|.+++. ..|+|||+|.|.++ +.++|+||..
T Consensus 1 V~~~~~~~~~-----~~~i~l~~~~~~~~~pGQ~v~l~~~~~---------~~r~ySi~s~~~~~----~~~~~~i~~~- 61 (222)
T cd06194 1 VVSLQRLSPD-----VLRVRLEPDRPLPYLPGQYVNLRRAGG---------LARSYSPTSLPDGD----NELEFHIRRK- 61 (222)
T ss_pred CceeeecCCC-----EEEEEEecCCCCCcCCCCEEEEEcCCC---------CceeeecCCCCCCC----CEEEEEEEec-
Confidence 5678899998 999999998888999999999998762 56999999998653 6899999987
Q ss_pred eecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcc
Q 017070 180 YYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYK 258 (378)
Q Consensus 180 ~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~ 258 (378)
++|.+|.||++ +++|++|.|.||+|.+++.+. ...+++|||||||||||+++|+++++..+.
T Consensus 62 ------------~~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~-~~~~~~v~iagG~Giap~~~~l~~~~~~~~---- 124 (222)
T cd06194 62 ------------PNGAFSGWLGEEARPGHALRLQGPFGQAFYRPE-YGEGPLLLVGAGTGLAPLWGIARAALRQGH---- 124 (222)
T ss_pred ------------cCCccchHHHhccCCCCEEEEecCcCCeeccCC-CCCCCEEEEecCcchhhHHHHHHHHHhcCC----
Confidence 77999999998 799999999999999988642 245799999999999999999999876543
Q ss_pred cCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCC
Q 017070 259 FGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGL 338 (378)
Q Consensus 259 ~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp 338 (378)
.++++|+|++|+.++++|.+||++|+++++ ++++++++++++..|.. ++... +.+. + ........+|+|||
T Consensus 125 -~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~~~~---~-~~~~~~~~vyicGp 195 (222)
T cd06194 125 -QGEIRLVHGARDPDDLYLHPALLWLAREHP-NFRYIPCVSEGSQGDPR--VRAGR-IAAH---L-PPLTRDDVVYLCGA 195 (222)
T ss_pred -CccEEEEEecCChhhccCHHHHHHHHHHCC-CeEEEEEEccCCCCCcc--cccch-hhhh---h-ccccCCCEEEEeCC
Confidence 267999999999999999999999998887 89999999887654321 11211 1111 1 11235679999999
Q ss_pred CCcHHHHHHHHHHHHHHcCCCHHHH
Q 017070 339 KGMMPGIQETLKRVAEQRGESWDQK 363 (378)
Q Consensus 339 ~~m~~~v~~~L~~~g~~~g~~~~~~ 363 (378)
++|++++++.|.+. |++.+.+
T Consensus 196 ~~m~~~~~~~L~~~----Gv~~~~i 216 (222)
T cd06194 196 PSMVNAVRRRAFLA----GAPMKRI 216 (222)
T ss_pred HHHHHHHHHHHHHc----CCCHHHe
Confidence 99999999998764 5554433
No 37
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=100.00 E-value=7.5e-37 Score=290.63 Aligned_cols=226 Identities=24% Similarity=0.261 Sum_probs=175.2
Q ss_pred CCCeEEEEeEEEEecCCCCCCceEEEEeeC--C---CCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCC
Q 017070 93 KEPYTATIVSVERVVGAKAPGETCHIVIDH--G---GNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFD 167 (378)
Q Consensus 93 ~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~--~---~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~ 167 (378)
...++++|++++++++| +..++|+. + ..+.|+||||+.|.+++. ..|+|||+|.|.+
T Consensus 3 ~~~~~~~V~~~~~~t~d-----~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---------~~~pySias~p~~---- 64 (289)
T PRK08345 3 YALHDAKILEVYDLTER-----EKLFLLRFEDPELAESFTFKPGQFVQVTIPGV---------GEVPISICSSPTR---- 64 (289)
T ss_pred cCceeEEEEEEEecCCC-----CCEEEEEEeCccccCCCCcCCCCEEEEEcCCC---------CceeeEecCCCCC----
Confidence 35688999999999998 66666553 3 236799999999998763 3489999999864
Q ss_pred CCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHH
Q 017070 168 GKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLR 247 (378)
Q Consensus 168 ~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~ 247 (378)
.+.++|+||+. |.+|++|+++++|++|.|+||+|.++..+. ...+++|||||||||||+++|++
T Consensus 65 ~~~l~l~Ik~~---------------G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~-~~~~~~llIAgGtGIaP~~s~l~ 128 (289)
T PRK08345 65 KGFFELCIRRA---------------GRVTTVIHRLKEGDIVGVRGPYGNGFPVDE-MEGMDLLLIAGGLGMAPLRSVLL 128 (289)
T ss_pred CCEEEEEEEeC---------------ChHHHHHHhCCCCCEEEEeCCCCCCCCccc-ccCceEEEEecccchhHHHHHHH
Confidence 37899999975 899999999999999999999999655432 13468999999999999999999
Q ss_pred HHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCC------------CccchhHH
Q 017070 248 RMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKG------------GKMYVQDK 315 (378)
Q Consensus 248 ~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~------------~~~~v~~~ 315 (378)
+++....+ .++++|+|++|+.++++|.+||.+|+++++ +|++++++++++ .|.+ ..+++.+.
T Consensus 129 ~~l~~~~~----~~~v~l~~~~r~~~d~~~~deL~~l~~~~~-~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~g~v~~~ 202 (289)
T PRK08345 129 YAMDNRWK----YGNITLIYGAKYYEDLLFYDELIKDLAEAE-NVKIIQSVTRDP-EWPGCHGLPQGFIERVCKGVVTDL 202 (289)
T ss_pred HHHhcCCC----CCcEEEEEecCCHHHhhHHHHHHHHHhcCC-CEEEEEEecCCC-CCcCccccccccccccccCchhhh
Confidence 98766422 257999999999999999999999988887 899999999854 3322 12344443
Q ss_pred HHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 017070 316 IEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQL 367 (378)
Q Consensus 316 i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l 367 (378)
+.+.. ....+..+|+|||++|++++.+.|.+. |++.+.++..|
T Consensus 203 ~~~~~-----~~~~~~~vyiCGP~~m~~~v~~~L~~~----Gv~~~~i~~~l 245 (289)
T PRK08345 203 FREAN-----TDPKNTYAAICGPPVMYKFVFKELINR----GYRPERIYVTL 245 (289)
T ss_pred hhhcC-----CCccccEEEEECCHHHHHHHHHHHHHc----CCCHHHEEEEe
Confidence 32210 001456899999999999999888654 66666655444
No 38
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=8.1e-37 Score=281.77 Aligned_cols=219 Identities=20% Similarity=0.307 Sum_probs=180.1
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCC--ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGN--VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~--~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
.+++|++++.++++ +++++|+.++. +.|+||||+.|.++..+ + ....|+|||+|.|.+ .+.++|
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~----~-~~~~r~ySi~s~~~~----~~~l~l 67 (235)
T cd06217 2 RVLRVTEIIQETPT-----VKTFRLAVPDGVPPPFLAGQHVDLRLTAID----G-YTAQRSYSIASSPTQ----RGRVEL 67 (235)
T ss_pred ceEEEEEEEecCCC-----eEEEEEECCCCCcCCcCCcCeEEEEEecCC----C-ceeeeeecccCCCCC----CCeEEE
Confidence 35899999999998 99999998876 78999999999986311 1 135699999999864 268999
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhc
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFME 252 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~ 252 (378)
+|+.. ++|.+|.+|++ +++||+|.|.||+|.|.+.+. ..+++|||||||||||+++|++++...
T Consensus 68 ~v~~~-------------~~G~~s~~l~~~l~~Gd~v~i~gP~G~~~~~~~--~~~~~vliagG~Giap~~~~~~~~~~~ 132 (235)
T cd06217 68 TVKRV-------------PGGEVSPYLHDEVKVGDLLEVRGPIGTFTWNPL--HGDPVVLLAGGSGIVPLMSMIRYRRDL 132 (235)
T ss_pred EEEEc-------------CCCcchHHHHhcCCCCCEEEEeCCceeeEeCCC--CCceEEEEecCcCccHHHHHHHHHHhc
Confidence 99987 77999999987 999999999999999877652 357899999999999999999998876
Q ss_pred cCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeecc-ccccCCCccchhHHHHhhHHHHHhccCCCe
Q 017070 253 SVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSRE-QKNKKGGKMYVQDKIEEYSDEIFKRLDGGA 331 (378)
Q Consensus 253 ~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~-~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~ 331 (378)
+. ..+++|+|++|+.++++|.++|.++.++++ +++++++++++ ++.|.+..|++...+.+ ++... ..+.
T Consensus 133 ~~-----~~~i~l~~~~r~~~~~~~~~el~~~~~~~~-~~~~~~~~s~~~~~~~~~~~g~~~~~~l~---~~~~~-~~~~ 202 (235)
T cd06217 133 GW-----PVPFRLLYSARTAEDVIFRDELEQLARRHP-NLHVTEALTRAAPADWLGPAGRITADLIA---ELVPP-LAGR 202 (235)
T ss_pred CC-----CceEEEEEecCCHHHhhHHHHHHHHHHHCC-CeEEEEEeCCCCCCCcCCcCcEeCHHHHH---hhCCC-ccCC
Confidence 53 257999999999999999999999999887 89999999987 45566666777654322 11111 2567
Q ss_pred EEEEeCCCCcHHHHHHHHHHHH
Q 017070 332 HIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 332 ~vyvCGp~~m~~~v~~~L~~~g 353 (378)
.||+|||++|++++.+.|.+.|
T Consensus 203 ~v~icGp~~m~~~v~~~l~~~G 224 (235)
T cd06217 203 RVYVCGPPAFVEAATRLLLELG 224 (235)
T ss_pred EEEEECCHHHHHHHHHHHHHcC
Confidence 9999999999999999987653
No 39
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=1.7e-35 Score=294.41 Aligned_cols=269 Identities=27% Similarity=0.466 Sum_probs=216.9
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCC--------------CC--------------
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGEN--------------PK-------------- 144 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~--------------~~-------------- 144 (378)
.++.++|+++++|++. +..++++|.|+.++ .+.|+||.++.|.+.+.. .+
T Consensus 4 ~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~~~~ 82 (416)
T cd06204 4 NPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEPASK 82 (416)
T ss_pred CCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCccccc
Confidence 4689999999999998 77799999999865 689999999998654311 00
Q ss_pred -----------------------------------------C--------CC----------------------------
Q 017070 145 -----------------------------------------K--------PG---------------------------- 147 (378)
Q Consensus 145 -----------------------------------------~--------~g---------------------------- 147 (378)
+ +|
T Consensus 83 ~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s~~~~~~~~~~~~~~~~~~dvL~~f~s~~~~ 162 (416)
T cd06204 83 KVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLASEGKDEYAKWIVEPHRNLLEVLQDFPSAKPT 162 (416)
T ss_pred CCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHhcCHHHHHHHHhhcCCCHHHHHHhCcccCCC
Confidence 0 00
Q ss_pred -----------CCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCC------------
Q 017070 148 -----------NPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSK------------ 204 (378)
Q Consensus 148 -----------~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~------------ 204 (378)
.+.++|.|||+|+|.. +++.++|+|+.+.|..+. +. ...|.+|+||+++.
T Consensus 163 ~~pl~~ll~~lp~~~pR~YSIsSsp~~---~~~~i~ltV~~v~~~~~~-~~---~~~G~~S~~L~~~~~~~~~~~~~~~~ 235 (416)
T cd06204 163 PPPFDFLIELLPRLQPRYYSISSSSKV---HPNRIHITAVVVKYPTPT-GR---IIKGVATNWLLALKPALNGEKPPTPY 235 (416)
T ss_pred CCCHHHHHHhCccCCCcceeeccCccC---CCCEEEEEEEEEEeeCCC-CC---EEeeeehHHHHhhhhhhccccccccc
Confidence 1346899999999964 357899999987554432 22 26799999999955
Q ss_pred ---------CCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCC-CC
Q 017070 205 ---------PGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANP-DS 274 (378)
Q Consensus 205 ---------~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~-~~ 274 (378)
+|+.|.+..|.|.|.+.. +...++||||+|||||||+||+++......... ..++++||||+|+. .+
T Consensus 236 ~~~~~~~~~~g~~v~v~~~~g~F~lp~--~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~-~~~~v~L~~G~R~~~~d 312 (416)
T cd06204 236 YLSGPRKKGGGSKVPVFVRRSNFRLPT--KPSTPVIMIGPGTGVAPFRGFIQERAALKESGK-KVGPTLLFFGCRHPDED 312 (416)
T ss_pred ccccccccCCCCeEEEEEecCCCCCCC--CCCCCEEEEeCCcchHHHHHHHHHHHHHhhccC-ccCCEEEEEcCCCCCcc
Confidence 899999999999987754 346899999999999999999998653321100 13689999999998 69
Q ss_pred cccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCCC-cHHHHHHHHHHHH
Q 017070 275 LLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKG-MMPGIQETLKRVA 353 (378)
Q Consensus 275 ~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~-m~~~v~~~L~~~g 353 (378)
++|.+||++|.+.++ ++++++++||++. .++|+++++.+..+++++.+.+++.||+|||+. |++++++.|.++.
T Consensus 313 ~ly~~el~~~~~~~~-~~~l~~a~Sr~~~----~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~ 387 (416)
T cd06204 313 FIYKDELEEYAKLGG-LLELVTAFSREQP----KKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEIL 387 (416)
T ss_pred cchHHHHHHHHHcCC-ceEEEEEECcCCC----CCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHH
Confidence 999999999998776 8999999998753 478999999887777766665678999999998 9999999999998
Q ss_pred HHcC-C---CHHHHHHHHHHcCCeEEeeC
Q 017070 354 EQRG-E---SWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 354 ~~~g-~---~~~~~~~~l~~~~r~~~e~~ 378 (378)
.+.+ + .+++++++|+++|||++|||
T Consensus 388 ~~~~~~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 388 AEQGGMTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence 8765 3 47789999999999999999
No 40
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=100.00 E-value=2.2e-36 Score=281.23 Aligned_cols=219 Identities=20% Similarity=0.323 Sum_probs=177.6
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCC---ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKT 170 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~ 170 (378)
....++|+++++++++ +++|+|+.+.. +.|+||||+.|.++..+. .....|+|||+|.|.+ +.
T Consensus 5 ~~~~~~v~~~~~~s~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~----~~~~~R~ySi~s~~~~-----~~ 70 (247)
T cd06184 5 GFRPFVVARKVAESED-----ITSFYLEPADGGPLPPFLPGQYLSVRVKLPGL----GYRQIRQYSLSDAPNG-----DY 70 (247)
T ss_pred CcEEEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCCCCCCEEEEEEecCCC----CCceeEEeEeccCCCC-----Ce
Confidence 4578999999999998 99999998753 689999999999864210 1136899999999864 58
Q ss_pred EEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHH
Q 017070 171 ASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRM 249 (378)
Q Consensus 171 l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~ 249 (378)
++|+||.. ++|.+|+||++ +++|++|.|.||+|.|.+.+. ..+++|||||||||||+++|++++
T Consensus 71 l~~~ik~~-------------~~G~~s~~l~~~~~~Gd~v~i~gP~G~~~~~~~--~~~~llliagGtGiaP~~~~l~~~ 135 (247)
T cd06184 71 YRISVKRE-------------PGGLVSNYLHDNVKVGDVLEVSAPAGDFVLDEA--SDRPLVLISAGVGITPMLSMLEAL 135 (247)
T ss_pred EEEEEEEc-------------CCCcchHHHHhcCCCCCEEEEEcCCCceECCCC--CCCcEEEEeccccHhHHHHHHHHH
Confidence 99999987 77999999998 999999999999999877542 457899999999999999999999
Q ss_pred HhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeecccccc----CCCccchhHHHHhhHHHHHh
Q 017070 250 FMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNK----KGGKMYVQDKIEEYSDEIFK 325 (378)
Q Consensus 250 ~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~----~~~~~~v~~~i~~~~~~l~~ 325 (378)
..... .++++|+|++|+.++++|.++|.+|+++++ +++++++++++...| .+..|++...+. .+.
T Consensus 136 ~~~~~-----~~~i~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l---~~~-- 204 (247)
T cd06184 136 AAEGP-----GRPVTFIHAARNSAVHAFRDELEELAARLP-NLKLHVFYSEPEAGDREEDYDHAGRIDLALL---REL-- 204 (247)
T ss_pred HhcCC-----CCcEEEEEEcCchhhHHHHHHHHHHHhhCC-CeEEEEEECCCCcccccccccccCccCHHHH---hhc--
Confidence 87532 257999999999999999999999998887 999999999875543 333455543221 111
Q ss_pred ccCCCeEEEEeCCCCcHHHHHHHHHHH
Q 017070 326 RLDGGAHIYFCGLKGMMPGIQETLKRV 352 (378)
Q Consensus 326 ~~~~~~~vyvCGp~~m~~~v~~~L~~~ 352 (378)
....+..||+|||++|++++++.|.+.
T Consensus 205 ~~~~~~~v~icGp~~m~~~v~~~l~~~ 231 (247)
T cd06184 205 LLPADADFYLCGPVPFMQAVREGLKAL 231 (247)
T ss_pred cCCCCCEEEEECCHHHHHHHHHHHHHc
Confidence 113568999999999999999988754
No 41
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=100.00 E-value=3.2e-36 Score=278.93 Aligned_cols=229 Identities=22% Similarity=0.315 Sum_probs=185.1
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCC----ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGN----VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTA 171 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~----~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l 171 (378)
+.++|+++++++++ +++|+|+.+.+ +.|.||||+.|.++..+ ....|+|||+|.+.+ +.+
T Consensus 2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g------~~~~r~ysi~s~~~~-----~~l 65 (241)
T cd06214 2 HPLTVAEVVRETAD-----AVSITFDVPEELRDAFRYRPGQFLTLRVPIDG------EEVRRSYSICSSPGD-----DEL 65 (241)
T ss_pred ceEEEEEEEecCCC-----eEEEEEecCcccCCCCCcCCCCeEEEEeecCC------CeeeeeeeecCCCCC-----CcE
Confidence 67899999999998 99999998764 47999999999987422 136899999998754 479
Q ss_pred EEEEEEeeeecCCCCCCCCCCCCchhhHhh-cCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHH
Q 017070 172 SLCVRRAVYYDPESGKEDPSKSGICSNFLC-NSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMF 250 (378)
Q Consensus 172 ~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~ 250 (378)
+|+|+.+ ++|.+|.||+ ++++|+++.|.||+|.+++.+. +...++|||||||||||++++++++.
T Consensus 66 ~~~i~~~-------------~~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~-~~~~~~llia~GtGiap~~~~~~~~~ 131 (241)
T cd06214 66 RITVKRV-------------PGGRFSNWANDELKAGDTLEVMPPAGRFTLPPL-PGARHYVLFAAGSGITPVLSILKTAL 131 (241)
T ss_pred EEEEEEc-------------CCCccchhHHhccCCCCEEEEeCCccccccCCC-CCCCcEEEEecccChhhHHHHHHHHH
Confidence 9999998 7899999998 5999999999999999988763 13689999999999999999999988
Q ss_pred hccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHH-HhhHHHHHhccCC
Q 017070 251 MESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKI-EEYSDEIFKRLDG 329 (378)
Q Consensus 251 ~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i-~~~~~~l~~~~~~ 329 (378)
.... .++++|+|++|+.++++|.++|++|.+.++++|+++.++++++..|.+..|.+.+.+ .+...++. ....
T Consensus 132 ~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~ 205 (241)
T cd06214 132 AREP-----ASRVTLVYGNRTEASVIFREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLL-DATE 205 (241)
T ss_pred hcCC-----CCcEEEEEEeCCHHHhhHHHHHHHHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhc-cccc
Confidence 7643 257999999999999999999999998887789999999987777765566665432 22222211 1124
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHH
Q 017070 330 GAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKL 364 (378)
Q Consensus 330 ~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~ 364 (378)
...||+|||+.|++++.+.|++ .|++.+.++
T Consensus 206 ~~~v~icGp~~mv~~v~~~l~~----~G~~~~~i~ 236 (241)
T cd06214 206 FDEAFLCGPEPMMDAVEAALLE----LGVPAERIH 236 (241)
T ss_pred CcEEEEECCHHHHHHHHHHHHH----cCCCHHHee
Confidence 5789999999999999988865 456655443
No 42
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=100.00 E-value=2.8e-36 Score=275.39 Aligned_cols=213 Identities=31% Similarity=0.471 Sum_probs=173.3
Q ss_pred EEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEeeee
Q 017070 102 SVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYY 181 (378)
Q Consensus 102 ~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~ 181 (378)
+++.++++ +++++|+.++.+.|+||||+.|.+++.+. ...|+|||+|.|.+ .+.++|+||..
T Consensus 2 ~~~~~~~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~------~~~r~ySi~s~~~~----~~~~~l~vk~~--- 63 (223)
T cd00322 2 ATEDVTDD-----VRLFRLQLPNGFSFKPGQYVDLHLPGDGR------GLRRAYSIASSPDE----EGELELTVKIV--- 63 (223)
T ss_pred ceEEecCC-----eEEEEEecCCCCCcCCCcEEEEEecCCCC------cceeeeeccCCCCC----CCeEEEEEEEe---
Confidence 46778887 99999999887889999999999886321 47899999999864 27899999997
Q ss_pred cCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCC
Q 017070 182 DPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGG 261 (378)
Q Consensus 182 ~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~ 261 (378)
++|.+|+||+++++|++|.|.||+|.+++.. ...+++|||||||||||+++|++++..... .+
T Consensus 64 ----------~~G~~s~~l~~~~~G~~v~i~gP~G~~~~~~--~~~~~~v~ia~G~Giap~~~~l~~~~~~~~-----~~ 126 (223)
T cd00322 64 ----------PGGPFSAWLHDLKPGDEVEVSGPGGDFFLPL--EESGPVVLIAGGIGITPFRSMLRHLAADKP-----GG 126 (223)
T ss_pred ----------CCCchhhHHhcCCCCCEEEEECCCcccccCc--ccCCcEEEEecCCchhHHHHHHHHHHhhCC-----CC
Confidence 7799999999999999999999999997554 256899999999999999999999887642 26
Q ss_pred eEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCCCc
Q 017070 262 LAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKGM 341 (378)
Q Consensus 262 ~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m 341 (378)
+++|+|++|+.++++|.++|.+|.+.++ ++++++++++++..+.+..+++.. ........ ....+..+|+|||++|
T Consensus 127 ~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~yvCGp~~m 202 (223)
T cd00322 127 EITLLYGARTPADLLFLDELEELAKEGP-NFRLVLALSRESEAKLGPGGRIDR--EAEILALL-PDDSGALVYICGPPAM 202 (223)
T ss_pred cEEEEEecCCHHHhhHHHHHHHHHHhCC-CeEEEEEecCCCCCCCcccceeeH--HHHHHhhc-ccccCCEEEEECCHHH
Confidence 7999999999999999999999999887 999999999887766544443321 01111111 1125679999999999
Q ss_pred HHHHHHHHHHHH
Q 017070 342 MPGIQETLKRVA 353 (378)
Q Consensus 342 ~~~v~~~L~~~g 353 (378)
++++++.|.+.|
T Consensus 203 ~~~~~~~L~~~g 214 (223)
T cd00322 203 AKAVREALVSLG 214 (223)
T ss_pred HHHHHHHHHHcC
Confidence 999999987653
No 43
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=301.49 Aligned_cols=270 Identities=34% Similarity=0.599 Sum_probs=233.3
Q ss_pred CCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCC-----------C-------------
Q 017070 90 YKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP-----------K------------- 144 (378)
Q Consensus 90 ~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~-----------~------------- 144 (378)
+.+...+.+++..++++++..+.++++++.|+.++ .+.|.||+++.|.+.+... +
T Consensus 216 ~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~~~~~~ 295 (587)
T COG0369 216 YSKPAPSVAILLENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVDGETLP 295 (587)
T ss_pred ccccCcceeEeeccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccCCCcch
Confidence 34567899999999999999999999999999998 7899999999998875431 0
Q ss_pred -----------------------------------C-----------------------------------CCCCCCcee
Q 017070 145 -----------------------------------K-----------------------------------PGNPHNVRL 154 (378)
Q Consensus 145 -----------------------------------~-----------------------------------~g~~~~~R~ 154 (378)
. ...++.+|.
T Consensus 296 ~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~d~L~~f~~~~l~~~~li~~l~~lkPR~ 375 (587)
T COG0369 296 LVEALKSHFEFTSAPKSLLENLAHFAGQEELRRLLEQLDIADLQDYAKRRTLIDVLRDFPPAKLPAEELIDLLPPLKPRL 375 (587)
T ss_pred HHHHHHHheecccchHHHHHHHHHhcCCHHHHHHHHhhhhHHHHhhhccccHHHHHhhccccCCCHHHHHHhCccCCCee
Confidence 0 013568999
Q ss_pred cccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCC-CCEEEEEeeCCCCCCCCCCCCCCcEEEE
Q 017070 155 YSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKP-GDKVLITGPSGKIMLLPEDNPNATHIMI 233 (378)
Q Consensus 155 ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~-Gd~v~v~GP~G~~~~~~~~~~~~~vv~I 233 (378)
|||+|++... +++++|+|..+.|..+.. .+.|.||+||+++.+ |++|.|....++-|..+. ++.+|+|||
T Consensus 376 YSIsSs~~~~---~~~vhltV~vV~y~~~~~-----~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~-~~~~PiIMI 446 (587)
T COG0369 376 YSIASSPGVS---PDEVHLTVGVVRYQAEGR-----ERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPE-DPETPIIMI 446 (587)
T ss_pred eEeccCCCCC---CCeEEEEEEEEEeccCCC-----cccccchHHHHhhhcCCCeEEEEeccCCccccCC-CCCCceEEE
Confidence 9999999863 589999999887766632 388999999999554 999999998885455453 355999999
Q ss_pred ecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCC-CCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccch
Q 017070 234 ATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANP-DSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYV 312 (378)
Q Consensus 234 AgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~-~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v 312 (378)
+.|||||||++++++....+.. +++|||||+|+. .|++|++||+++.+.+- .++++.++||++. ++.||
T Consensus 447 G~GTGIAPFRafvq~r~~~~~~-----gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~-~~~l~~AfSRdq~----~KiYV 516 (587)
T COG0369 447 GPGTGIAPFRAFVQERAANGAE-----GKNWLFFGCRHFTEDFLYQEEWEEYLKDGV-LTRLDLAFSRDQE----EKIYV 516 (587)
T ss_pred cCCCCchhHHHHHHHHHhcccc-----CceEEEecCCCCccchhhHHHHHHHHhcCC-ceeEEEEEeecCC----CCccH
Confidence 9999999999999999887754 579999999995 59999999999998875 7999999999984 68999
Q ss_pred hHHHHhhHHHHHhccCCCeEEEEeC-CCCcHHHHHHHHHHHHHHcC----CCHHHHHHHHHHcCCeEEeeC
Q 017070 313 QDKIEEYSDEIFKRLDGGAHIYFCG-LKGMMPGIQETLKRVAEQRG----ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 313 ~~~i~~~~~~l~~~~~~~~~vyvCG-p~~m~~~v~~~L~~~g~~~g----~~~~~~~~~l~~~~r~~~e~~ 378 (378)
|++|++..++++.++++++.+|+|| ...|.+.|.++|.++..+.| .++++++++|++++||+.|||
T Consensus 517 Qd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 517 QDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred HHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 9999999999999998889999999 89999999999999998876 568899999999999999999
No 44
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=100.00 E-value=4.6e-36 Score=297.93 Aligned_cols=225 Identities=20% Similarity=0.288 Sum_probs=179.3
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCC---CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGG---NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKT 170 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~ 170 (378)
....++|++++.++++ ++.|+|+.++ .+.|+||||+.|.++..+. ....+|+|||+|.|.+ +.
T Consensus 153 ~~~~~~V~~~~~~t~~-----~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~----~~~~~R~ySias~p~~-----~~ 218 (399)
T PRK13289 153 GWRDFRVVKKVPESEV-----ITSFYLEPVDGGPVADFKPGQYLGVRLDPEGE----EYQEIRQYSLSDAPNG-----KY 218 (399)
T ss_pred CcEEEEEEEEEECCCC-----EEEEEEEcCCCCcCCCCCCCCeEEEEEecCCc----cccceeEEEeeeCCCC-----Ce
Confidence 5577899999999998 9999999764 2689999999998753210 0123599999999853 68
Q ss_pred EEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHH
Q 017070 171 ASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRM 249 (378)
Q Consensus 171 l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~ 249 (378)
++|+||+. ++|.+|+||++ +++||+|.|.||+|.|.+... ..+++|||||||||||+++|++++
T Consensus 219 l~~~Vk~~-------------~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~--~~~~~vlIagGtGIaP~~s~l~~~ 283 (399)
T PRK13289 219 YRISVKRE-------------AGGKVSNYLHDHVNVGDVLELAAPAGDFFLDVA--SDTPVVLISGGVGITPMLSMLETL 283 (399)
T ss_pred EEEEEEEC-------------CCCeehHHHhhcCCCCCEEEEEcCccccccCCC--CCCcEEEEecCccHHHHHHHHHHH
Confidence 99999987 88999999997 999999999999999887652 468999999999999999999998
Q ss_pred HhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeecccccc-CC----CccchhHHHHhhHHHHH
Q 017070 250 FMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNK-KG----GKMYVQDKIEEYSDEIF 324 (378)
Q Consensus 250 ~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~-~~----~~~~v~~~i~~~~~~l~ 324 (378)
..... .++++||||+|+.++++|.++|++|+++++ +|+++++++++...+ .+ ..|++...+ +.+
T Consensus 284 ~~~~~-----~~~v~l~~~~r~~~~~~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~---l~~-- 352 (399)
T PRK13289 284 AAQQP-----KRPVHFIHAARNGGVHAFRDEVEALAARHP-NLKAHTWYREPTEQDRAGEDFDSEGLMDLEW---LEA-- 352 (399)
T ss_pred HhcCC-----CCCEEEEEEeCChhhchHHHHHHHHHHhCC-CcEEEEEECCCccccccCCcccccCcccHHH---HHh--
Confidence 76543 268999999999999999999999999998 899999999865422 22 134554321 111
Q ss_pred hcc-CCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHH
Q 017070 325 KRL-DGGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQK 363 (378)
Q Consensus 325 ~~~-~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~ 363 (378)
.+ ..+..||+|||++|++++.+.|.+. |++.+.+
T Consensus 353 -~~~~~~~~vyiCGp~~m~~~v~~~L~~~----Gv~~~~I 387 (399)
T PRK13289 353 -WLPDPDADFYFCGPVPFMQFVAKQLLEL----GVPEERI 387 (399)
T ss_pred -hCCCCCCEEEEECCHHHHHHHHHHHHHc----CCCHHHe
Confidence 12 2467899999999999999888654 5555543
No 45
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=100.00 E-value=1e-35 Score=285.71 Aligned_cols=226 Identities=16% Similarity=0.161 Sum_probs=179.8
Q ss_pred CCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC--CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCC
Q 017070 92 PKEPYTATIVSVERVVGAKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGK 169 (378)
Q Consensus 92 ~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~ 169 (378)
....++++|++++.+|+| +++|+|+.+. .+.|.||||+.+.++.... + .....|+|||+|.|.+ .+
T Consensus 49 ~~~~~~~~V~~i~~~t~d-----v~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~--~-~~~~~R~YSiaS~p~~----~~ 116 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHD-----TALFRFLLHSEEEFNLKPCSTLQACYKYGVQ--P-MDQCQRFYTPVTANHT----KG 116 (325)
T ss_pred CCceEEEEEEEEEEeCCC-----eEEEEEeCCcccccCCCCccEEEEEEecCCC--C-CCEEEEeeecCCCCCC----CC
Confidence 346789999999999998 9999998764 5889999999987653110 1 1136899999999964 27
Q ss_pred EEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHH
Q 017070 170 TASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRM 249 (378)
Q Consensus 170 ~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~ 249 (378)
.++|+||+. ++|.+|+||+++++||+|.|.||.|.+.+.++ ..+++|||||||||||+++|++++
T Consensus 117 ~le~~IK~~-------------~~G~~S~~L~~lk~Gd~v~v~GP~f~~~~~~~--~~~~lvlIAGGsGITP~lsmlr~~ 181 (325)
T PTZ00274 117 YFDIIVKRK-------------KDGLMTNHLFGMHVGDKLLFRSVTFKIQYRPN--RWKHVGMIAGGTGFTPMLQIIRHS 181 (325)
T ss_pred eEEEEEEEc-------------CCCcccHHHhcCCCCCEEEEeCCeeecccCCC--CCceEEEEeCCcchhHHHHHHHHH
Confidence 899999998 89999999999999999999999888766542 347999999999999999999998
Q ss_pred HhccCCCc-ccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeecc--ccccCCCccchhHHH-HhhHHHHHh
Q 017070 250 FMESVPTY-KFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSRE--QKNKKGGKMYVQDKI-EEYSDEIFK 325 (378)
Q Consensus 250 ~~~~~~~~-~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~--~~~~~~~~~~v~~~i-~~~~~~l~~ 325 (378)
+.++.... ....+++|+|++|+.++++|.++|++|+++++++|+++++++++ ++.|.+..|++.+.+ .+.. .
T Consensus 182 l~~~~~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~----~ 257 (325)
T PTZ00274 182 LTEPWDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTM----P 257 (325)
T ss_pred HhcccccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhc----C
Confidence 87642100 01247999999999999999999999999998679999999875 346777778887654 3221 1
Q ss_pred ccC-CCeEEEEeCCCCcHHHHHHH
Q 017070 326 RLD-GGAHIYFCGLKGMMPGIQET 348 (378)
Q Consensus 326 ~~~-~~~~vyvCGp~~m~~~v~~~ 348 (378)
... ....+|+|||++|++++...
T Consensus 258 ~~~~~~~~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 258 APEEKKKIIMLCGPDQLLNHVAGT 281 (325)
T ss_pred CCccCCcEEEEeCCHHHHHHhcCC
Confidence 111 23579999999999988554
No 46
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=3e-35 Score=291.09 Aligned_cols=214 Identities=29% Similarity=0.462 Sum_probs=173.8
Q ss_pred CCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCC-----CCCEEEEEe-eCCCCCCCC
Q 017070 149 PHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSK-----PGDKVLITG-PSGKIMLLP 222 (378)
Q Consensus 149 ~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~-----~Gd~v~v~G-P~G~~~~~~ 222 (378)
+..+|+|||+|+|.. .++.++|+|+.+.+. ..|.+|+||++++ +|++|.+.+ |.|.|.+..
T Consensus 171 ~~~~R~YSIsSsp~~---~~~~i~l~v~~v~~~----------~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~ 237 (398)
T cd06203 171 RLQPRPYSIASSPLE---GPGKLRFIFSVVEFP----------AKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPP 237 (398)
T ss_pred cCCCcceeecCCccc---CCCeEEEEEEEEEec----------CCChhhHHHHHhhhhhcCCCCEEEEEEecCCCcCCCC
Confidence 457899999999964 247899999987210 1599999999977 999999999 667777654
Q ss_pred CCCCCCcEEEEecCCcchhhHHHHHHHHhccC-CCcccCCeEEEEEeecCC-CCcccHHHHHHHHhhCCCceEEEEEeec
Q 017070 223 EDNPNATHIMIATGTGIAPFRGYLRRMFMESV-PTYKFGGLAWLFLGVANP-DSLLYDDEFTKYLQDYPDNFRYDKALSR 300 (378)
Q Consensus 223 ~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~-~~~~~~~~v~L~~g~r~~-~~~~~~del~~l~~~~~~~~~~~~~~Sr 300 (378)
. +...|+||||+|||||||++|++++..... ......++++||||+|+. .|++|.+||++|.++++ ++++++++||
T Consensus 238 ~-~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~-~~~~~~a~SR 315 (398)
T cd06203 238 D-DLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGI-LTRLIVAFSR 315 (398)
T ss_pred c-CCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCC-CceEEEEECC
Confidence 2 146899999999999999999998765210 000113689999999999 69999999999999887 7889999999
Q ss_pred cccccCCCccchhHHHHhhHHHHHhcc-CCCeEEEEeCCC-CcHHHHHHHHHHHHHHc-CC---CHHHHHHHHHHcCCeE
Q 017070 301 EQKNKKGGKMYVQDKIEEYSDEIFKRL-DGGAHIYFCGLK-GMMPGIQETLKRVAEQR-GE---SWDQKLSQLKKNKQWH 374 (378)
Q Consensus 301 ~~~~~~~~~~~v~~~i~~~~~~l~~~~-~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~-g~---~~~~~~~~l~~~~r~~ 374 (378)
++..| +.++||++.+.+..+++++.+ ..++.||+|||+ .|.++|+++|.++..+. |+ .+++++++|+++|||+
T Consensus 316 d~~~~-g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l~~~gRy~ 394 (398)
T cd06203 316 DENDG-STPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLARLRKEDRYL 394 (398)
T ss_pred CCCCC-CCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCee
Confidence 87644 568999999998887776665 367899999984 79999999999988775 33 4568999999999999
Q ss_pred EeeC
Q 017070 375 VEVY 378 (378)
Q Consensus 375 ~e~~ 378 (378)
+|||
T Consensus 395 ~dvw 398 (398)
T cd06203 395 EDVW 398 (398)
T ss_pred eecC
Confidence 9999
No 47
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=100.00 E-value=1e-35 Score=276.14 Aligned_cols=216 Identities=22% Similarity=0.326 Sum_probs=175.6
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCC-CCCCCCCEE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRY-GDSFDGKTA 171 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~-~~~~~~~~l 171 (378)
+.+.++|++++.++++ +++|+|+.+.. ..|+||||+.|.++..+. ...|+|||+|.|. + .+.+
T Consensus 16 ~~~~~~v~~i~~~~~~-----~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~------~~~r~ysi~s~~~~~----~~~l 80 (243)
T cd06216 16 RELRARVVAVRPETAD-----MVTLTLRPNRGWPGHRAGQHVRLGVEIDGV------RHWRSYSLSSSPTQE----DGTI 80 (243)
T ss_pred ceeEEEEEEEEEcCCC-----cEEEEEecCCCCCCcCCCceEEEEEEECCe------EEEEEEeccCCCcCC----CCeE
Confidence 5678999999999998 99999998765 579999999998864221 3579999999886 3 3789
Q ss_pred EEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHH
Q 017070 172 SLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMF 250 (378)
Q Consensus 172 ~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~ 250 (378)
+|+||.. ++|.+|.||++ +++|++|.|+||+|.|.+... ..+++|||||||||||++++++++.
T Consensus 81 ~~~ik~~-------------~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~~--~~~~~v~iagG~Giap~~s~l~~~~ 145 (243)
T cd06216 81 TLTVKAQ-------------PDGLVSNWLVNHLAPGDVVELSQPQGDFVLPDP--LPPRLLLIAAGSGITPVMSMLRTLL 145 (243)
T ss_pred EEEEEEc-------------CCCcchhHHHhcCCCCCEEEEECCceeeecCCC--CCCCEEEEecCccHhHHHHHHHHHH
Confidence 9999997 78999999997 999999999999999876542 3589999999999999999999987
Q ss_pred hccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCC
Q 017070 251 MESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGG 330 (378)
Q Consensus 251 ~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~ 330 (378)
.... .++++|+|++|+.++++|.++|++|.++++ +++++++++++ +..+++.... ++++... ..+
T Consensus 146 ~~~~-----~~~i~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~-----~~~g~~~~~~---l~~~~~~-~~~ 210 (243)
T cd06216 146 ARGP-----TADVVLLYYARTREDVIFADELRALAAQHP-NLRLHLLYTRE-----ELDGRLSAAH---LDAVVPD-LAD 210 (243)
T ss_pred hcCC-----CCCEEEEEEcCChhhhHHHHHHHHHHHhCC-CeEEEEEEcCC-----ccCCCCCHHH---HHHhccC-ccc
Confidence 7642 257999999999999999999999998887 89999888875 2344443321 1221111 145
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHH
Q 017070 331 AHIYFCGLKGMMPGIQETLKRVAE 354 (378)
Q Consensus 331 ~~vyvCGp~~m~~~v~~~L~~~g~ 354 (378)
..+|+|||++|++++++.|++.|.
T Consensus 211 ~~vyvcGp~~m~~~~~~~l~~~Gv 234 (243)
T cd06216 211 RQVYACGPPGFLDAAEELLEAAGL 234 (243)
T ss_pred CeEEEECCHHHHHHHHHHHHHCCC
Confidence 699999999999999999876543
No 48
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=100.00 E-value=7.1e-36 Score=278.85 Aligned_cols=219 Identities=23% Similarity=0.313 Sum_probs=177.8
Q ss_pred EeEEEEecCCCCCCceEEEEeeCCCC----ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEE
Q 017070 100 IVSVERVVGAKAPGETCHIVIDHGGN----VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCV 175 (378)
Q Consensus 100 V~~~~~lt~~~~~~~v~~l~l~~~~~----~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~I 175 (378)
|++++.++++ +..++|+.+.+ +.|+||||+.|.++.. ..|+|||+|.|.++ +.++|+|
T Consensus 1 v~~i~~~t~~-----v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~---------~~~pySi~s~~~~~----~~l~~~I 62 (253)
T cd06221 1 IVEVVDETED-----IKTFTLRLEDDDEELFTFKPGQFVMLSLPGV---------GEAPISISSDPTRR----GPLELTI 62 (253)
T ss_pred CceEEeccCC-----ceEEEEEeCCCccccCCcCCCCEEEEEcCCC---------CccceEecCCCCCC----CeEEEEE
Confidence 5688999998 77787776543 7899999999998863 34899999998642 7899999
Q ss_pred EEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCC
Q 017070 176 RRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVP 255 (378)
Q Consensus 176 r~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~ 255 (378)
|.. |.+|++|+++++|++|.|+||+|.++..+. ...+++||||+||||||+++|+++++.....
T Consensus 63 k~~---------------G~~S~~L~~l~~G~~v~i~gP~G~~f~~~~-~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~ 126 (253)
T cd06221 63 RRV---------------GRVTEALHELKPGDTVGLRGPFGNGFPVEE-MKGKDLLLVAGGLGLAPLRSLINYILDNRED 126 (253)
T ss_pred EeC---------------ChhhHHHHcCCCCCEEEEECCcCCCccccc-ccCCeEEEEccccchhHHHHHHHHHHhcccc
Confidence 974 889999999999999999999999766542 1458999999999999999999999876322
Q ss_pred CcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEE
Q 017070 256 TYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYF 335 (378)
Q Consensus 256 ~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyv 335 (378)
.++++|+|++|+.++++|.++|++|.++ + +|+++++++++.+.|.+..+++++.+.+... . ..+..||+
T Consensus 127 ----~~~i~Li~~~r~~~~~~~~~~L~~l~~~-~-~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~~----~-~~~~~vyi 195 (253)
T cd06221 127 ----YGKVTLLYGARTPEDLLFKEELKEWAKR-S-DVEVILTVDRAEEGWTGNVGLVTDLLPELTL----D-PDNTVAIV 195 (253)
T ss_pred ----CCcEEEEEecCChHHcchHHHHHHHHhc-C-CeEEEEEeCCCCCCccCCccccchhHHhcCC----C-cCCcEEEE
Confidence 2579999999999999999999999988 5 8999999998777777677787766544211 1 25678999
Q ss_pred eCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 017070 336 CGLKGMMPGIQETLKRVAEQRGESWDQKLSQL 367 (378)
Q Consensus 336 CGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l 367 (378)
|||++|++++.+.|.+ .|++.++++..+
T Consensus 196 cGp~~mv~~~~~~L~~----~Gv~~~~i~~~~ 223 (253)
T cd06221 196 CGPPIMMRFVAKELLK----LGVPEEQIWVSL 223 (253)
T ss_pred ECCHHHHHHHHHHHHH----cCCCHHHEEEeh
Confidence 9999999999988865 466666555444
No 49
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.1e-35 Score=271.38 Aligned_cols=213 Identities=22% Similarity=0.300 Sum_probs=168.8
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCV 175 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~I 175 (378)
++++|++++.++++ +++|+|+.+..+.|+||||+.|.++..+ .+...|+|||+|.|.+ +.++|+|
T Consensus 1 ~~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~-----~~~~~r~ySi~s~~~~-----~~l~~~v 65 (218)
T cd06196 1 HTVTLLSIEPVTHD-----VKRLRFDKPEGYDFTPGQATEVAIDKPG-----WRDEKRPFTFTSLPED-----DVLEFVI 65 (218)
T ss_pred CceEEEEEEEcCCC-----eEEEEEcCCCcCCCCCCCEEEEEeeCCC-----CCccccccccccCCCC-----CeEEEEE
Confidence 35899999999998 9999999988889999999999986532 2236899999999854 7899999
Q ss_pred EEeeeecCCCCCCCCCCC-CchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccC
Q 017070 176 RRAVYYDPESGKEDPSKS-GICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESV 254 (378)
Q Consensus 176 r~~~~~~~~~~~~~~~~~-G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~ 254 (378)
|.. ++ |.+|++|+++++|++|.++||+|.+.+. +++|||||||||||+++|+++++..+.
T Consensus 66 k~~-------------~~~g~~s~~l~~l~~G~~v~i~gP~G~~~~~------~~~vlia~GtGiaP~~s~l~~~~~~~~ 126 (218)
T cd06196 66 KSY-------------PDHDGVTEQLGRLQPGDTLLIEDPWGAIEYK------GPGVFIAGGAGITPFIAILRDLAAKGK 126 (218)
T ss_pred EEc-------------CCCCcHhHHHHhCCCCCEEEEECCccceEec------CceEEEecCCCcChHHHHHHHHHhCCC
Confidence 986 43 7789999999999999999999997642 579999999999999999999887543
Q ss_pred CCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEE
Q 017070 255 PTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIY 334 (378)
Q Consensus 255 ~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vy 334 (378)
..+++|+|++|+.++++|.+||++|. +++++++++++... ....+++...+ +.++. .+....||
T Consensus 127 -----~~~v~l~~~~r~~~~~~~~~el~~l~-----~~~~~~~~s~~~~~-~~~~g~~~~~~---l~~~~--~~~~~~vy 190 (218)
T cd06196 127 -----LEGNTLIFANKTEKDIILKDELEKML-----GLKFINVVTDEKDP-GYAHGRIDKAF---LKQHV--TDFNQHFY 190 (218)
T ss_pred -----CceEEEEEecCCHHHHhhHHHHHHhh-----cceEEEEEcCCCCC-CeeeeEECHHH---HHHhc--CCCCCEEE
Confidence 25799999999999999999999984 56777888875432 11244554322 12211 12346899
Q ss_pred EeCCCCcHHHHHHHHHHHHHHcCCCHHH
Q 017070 335 FCGLKGMMPGIQETLKRVAEQRGESWDQ 362 (378)
Q Consensus 335 vCGp~~m~~~v~~~L~~~g~~~g~~~~~ 362 (378)
+|||++|++++.+.|.+. |++.+.
T Consensus 191 iCGp~~m~~~~~~~l~~~----G~~~~~ 214 (218)
T cd06196 191 VCGPPPMEEAINGALKEL----GVPEDS 214 (218)
T ss_pred EECCHHHHHHHHHHHHHc----CCCHHH
Confidence 999999999999888665 555444
No 50
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=6.1e-35 Score=268.85 Aligned_cols=224 Identities=24% Similarity=0.328 Sum_probs=183.2
Q ss_pred EEeEEEEecCCCCCCceEEEEeeCCC---CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEE
Q 017070 99 TIVSVERVVGAKAPGETCHIVIDHGG---NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCV 175 (378)
Q Consensus 99 ~V~~~~~lt~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~I 175 (378)
+|++++.++++ +++++|+.+. .+.|+||||+.|.++..+. ...|+|||+|.+.+ .+.++|+|
T Consensus 2 ~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~------~~~R~ysi~s~~~~----~~~~~~~v 66 (234)
T cd06183 2 KLVSKEDISHD-----TRIFRFELPSPDQVLGLPVGQHVELKAPDDGE------QVVRPYTPISPDDD----KGYFDLLI 66 (234)
T ss_pred EeEEeEecCCC-----EEEEEEECCCCCCcCCCCcccEEEEEecCCCc------ccccccccccCCCc----CCEEEEEE
Confidence 68899999998 9999999875 3689999999999876321 36899999998864 26899999
Q ss_pred EEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCC-CcEEEEecCCcchhhHHHHHHHHhccC
Q 017070 176 RRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPN-ATHIMIATGTGIAPFRGYLRRMFMESV 254 (378)
Q Consensus 176 r~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~-~~vv~IAgGtGiaP~~sil~~~~~~~~ 254 (378)
|.. ++|.+|+||+++++|++|.|+||+|.|.+.+. .. .++|||||||||||+++++++++....
T Consensus 67 ~~~-------------~~G~~s~~l~~~~~G~~v~i~gP~G~~~~~~~--~~~~~~vliagGtGiaP~~~~l~~~~~~~~ 131 (234)
T cd06183 67 KIY-------------PGGKMSQYLHSLKPGDTVEIRGPFGKFEYKPN--GKVKHIGMIAGGTGITPMLQLIRAILKDPE 131 (234)
T ss_pred EEC-------------CCCcchhHHhcCCCCCEEEEECCccceeecCC--CCccEEEEEcCCcchhHHHHHHHHHHhCcC
Confidence 987 67999999999999999999999999887652 33 789999999999999999999876532
Q ss_pred CCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhc-cCCCeEE
Q 017070 255 PTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKR-LDGGAHI 333 (378)
Q Consensus 255 ~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~-~~~~~~v 333 (378)
. .++++|+|++|+.++++|.++|++|.+.++.++++++++++++..|.+..+++++.+... .... ...+..+
T Consensus 132 ~----~~~i~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~~~ 204 (234)
T cd06183 132 D----KTKISLLYANRTEEDILLREELDELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKE---HLPPPPSEDTLV 204 (234)
T ss_pred c----CcEEEEEEecCCHHHhhhHHHHHHHHHhCcccEEEEEEEcCCCcCCccccceECHHHHHH---hCCCCCCCCeEE
Confidence 1 368999999999999999999999998865589999999988777877778877544321 1111 1246789
Q ss_pred EEeCCCCcHH-HHHHHHHHHHHHcCCCHHHH
Q 017070 334 YFCGLKGMMP-GIQETLKRVAEQRGESWDQK 363 (378)
Q Consensus 334 yvCGp~~m~~-~v~~~L~~~g~~~g~~~~~~ 363 (378)
|+|||++|++ ++++.|.+ .|++.+.+
T Consensus 205 ~icGp~~~~~~~~~~~l~~----~G~~~~~i 231 (234)
T cd06183 205 LVCGPPPMIEGAVKGLLKE----LGYKKDNV 231 (234)
T ss_pred EEECCHHHHHHHHHHHHHH----cCCCHHHE
Confidence 9999999999 99999865 46655543
No 51
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=2.1e-34 Score=268.84 Aligned_cols=214 Identities=21% Similarity=0.338 Sum_probs=173.1
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCCc--cccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGNV--PYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTA 171 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~--~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l 171 (378)
..++.+|.+++..|+| ++.|+|..+... .|+||||+.|.++..+. ...|.|||+|+|.+. ..+
T Consensus 4 ~~~~~~V~~v~~~t~d-----i~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~------~~~R~YSl~s~p~~~----~~~ 68 (266)
T COG1018 4 GFRRVTVTSVEPETDD-----VFSFTLEPPDGLRLDFEPGQYITVGLPNGGE------PLLRAYSLSSAPDED----SLY 68 (266)
T ss_pred ceEEEEEEEEEEecCc-----eEEEEEEcCCCCccccCCCCeEEEEecCCCc------eeeEEEEeccCCCCC----ceE
Confidence 4588999999999998 999999998876 59999999999886431 489999999999863 689
Q ss_pred EEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHH
Q 017070 172 SLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMF 250 (378)
Q Consensus 172 ~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~ 250 (378)
.|.||+. ++|.+|+||++ +++||+|.|++|.|.|.+... ...+++|||||+|||||+||++.+.
T Consensus 69 ~isVk~~-------------~~G~~S~~Lh~~lk~Gd~l~v~~P~G~F~l~~~--~~~~~llla~G~GITP~lSml~~~~ 133 (266)
T COG1018 69 RISVKRE-------------DGGGGSNWLHDHLKVGDTLEVSAPAGDFVLDDL--PERKLLLLAGGIGITPFLSMLRTLL 133 (266)
T ss_pred EEEEEEe-------------CCCcccHHHHhcCCCCCEEEEecCCCCccCCCC--CCCcEEEEeccccHhHHHHHHHHHH
Confidence 9999997 66999999995 999999999999999999773 3458999999999999999999987
Q ss_pred hccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchh-HHHHhhHHHHHhccCC
Q 017070 251 MESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQ-DKIEEYSDEIFKRLDG 329 (378)
Q Consensus 251 ~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~-~~i~~~~~~l~~~~~~ 329 (378)
..+. .++.|+|++|+.+++.|.|| +.+.+++++...+....+ |....+++. .++. ....+
T Consensus 134 ~~~~------~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~~~~~~~~-----~~~~~g~~~~~~l~-------~~~~~ 194 (266)
T COG1018 134 DRGP------ADVVLVHAARTPADLAFRDE-LELAAELPNALLLGLYTE-----RGKLQGRIDVSRLL-------SAAPD 194 (266)
T ss_pred HhCC------CCEEEEEecCChhhcchhhH-HHHHhhCCCCeeEEEEEe-----cCCccccccHHHHh-------ccCCC
Confidence 7652 35999999999999999999 999999984344444443 111223332 2111 11222
Q ss_pred C-eEEEEeCCCCcHHHHHHHHHHHHHHc
Q 017070 330 G-AHIYFCGLKGMMPGIQETLKRVAEQR 356 (378)
Q Consensus 330 ~-~~vyvCGp~~m~~~v~~~L~~~g~~~ 356 (378)
. ..+|+|||.+|+++++..|.+++.+.
T Consensus 195 ~~r~~y~CGp~~fm~av~~~l~~~g~~~ 222 (266)
T COG1018 195 GGREVYLCGPGPFMQAVRLALEALGVPD 222 (266)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCh
Confidence 2 89999999999999999998776543
No 52
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=100.00 E-value=4.8e-35 Score=274.64 Aligned_cols=215 Identities=22% Similarity=0.323 Sum_probs=172.1
Q ss_pred CeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEE
Q 017070 95 PYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLC 174 (378)
Q Consensus 95 ~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~ 174 (378)
+++++|+++++++++ ++.|+|..+ ..|+||||+.|.+++. ..|+|||++.+ + +.++|+
T Consensus 7 ~~~~~v~~i~~~t~~-----~~~~~l~~~--~~~~pGQfi~l~~~~~---------~~~pySi~~~~-~-----~~~~~~ 64 (263)
T PRK08221 7 PAAYKILDITKHTDI-----EYTFRVEVD--GPVKPGQFFEVSLPKV---------GEAPISVSDYG-D-----GYIDLT 64 (263)
T ss_pred CccEEEEEEeccCCc-----EEEEEecCC--CCCCCCceEEEEeCCC---------CcceeeccCCC-C-----CEEEEE
Confidence 467999999999998 999999875 4799999999998863 34899999875 2 689999
Q ss_pred EEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCC-CCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhcc
Q 017070 175 VRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGK-IMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMES 253 (378)
Q Consensus 175 Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~ 253 (378)
||+. |.+|++|+++++|++|.|+||+|. |.+.+ ...+++|||||||||||+++|+++++...
T Consensus 65 Ik~~---------------G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~--~~~~~~llIAgGtGItP~~sil~~~~~~~ 127 (263)
T PRK08221 65 IRRV---------------GKVTDEIFNLKEGDKLFLRGPYGNGFPVDT--YKGKELIVVAGGTGVAPVKGLMRYFYENP 127 (263)
T ss_pred EEeC---------------CchhhHHHhCCCCCEEEEECCCCCCcccCc--cCCccEEEEcccccHHHHHHHHHHHHhCc
Confidence 9975 899999999999999999999998 44433 24579999999999999999999987654
Q ss_pred CCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEE
Q 017070 254 VPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHI 333 (378)
Q Consensus 254 ~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~v 333 (378)
.. .++++|+|++|+.++++|.+||++|++.+ + +++++++++..|.+..|++++.+.+.. ... ..+.++
T Consensus 128 ~~----~~~v~L~~g~r~~~~l~~~~el~~~~~~~--~--~~~~~~~~~~~~~~~~G~v~~~l~~~~---~~~-~~~~~v 195 (263)
T PRK08221 128 QE----IKSLDLILGFKNPDDILFKEDLKRWREKI--N--LILTLDEGEEGYRGNVGLVTKYIPELT---LKD-IDNMQV 195 (263)
T ss_pred cc----CceEEEEEecCCHHHhhHHHHHHHHhhcC--c--EEEEecCCCCCCccCccccChhhHhcc---CCC-cCCeEE
Confidence 32 25799999999999999999999998754 3 445567766677777788876544310 011 146789
Q ss_pred EEeCCCCcHHHHHHHHHHHHHHcCCCHHHHH
Q 017070 334 YFCGLKGMMPGIQETLKRVAEQRGESWDQKL 364 (378)
Q Consensus 334 yvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~ 364 (378)
|+|||++|++++.+.|++. |++.+.++
T Consensus 196 ylCGp~~mv~~~~~~L~~~----Gv~~~~i~ 222 (263)
T PRK08221 196 IVVGPPIMMKFTVLEFLKR----GIKEENIW 222 (263)
T ss_pred EEECCHHHHHHHHHHHHHc----CCCHHHEE
Confidence 9999999999999988654 56555443
No 53
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=100.00 E-value=3.3e-34 Score=273.67 Aligned_cols=246 Identities=20% Similarity=0.232 Sum_probs=181.8
Q ss_pred CCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC---CccccCCcEEEEeCCCCCCCCCCCC-CCceecccccCCCCC
Q 017070 89 LYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG---NVPYWEGQSYGVIPPGENPKKPGNP-HNVRLYSIASTRYGD 164 (378)
Q Consensus 89 ~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~g~~-~~~R~ySias~p~~~ 164 (378)
.+.+...+.++|+++++++++ ++.++|+.+. .+.|+||||+.|.++..+. +.+ ...|+||++|.|.+
T Consensus 27 ~~~~~~~~~~~v~~~~~~s~d-----~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~---~~~~~~~R~YS~~s~~~~- 97 (300)
T PTZ00319 27 ALDPDMFQHFKLIKKTEVTHD-----TFIFRFALHSPTQRLGLPIGQHIVFRCDCTTP---GKPETVQHSYTPISSDDE- 97 (300)
T ss_pred ccCcCceEEEEEEEEEEcCCC-----ceEEEEECCCCcccCCCccceEEEEEEEeCCC---CccceEEeeeccCCCccc-
Confidence 345567789999999999998 9999998643 2679999999999864211 111 25799999998854
Q ss_pred CCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCC-------------CCCCcEE
Q 017070 165 SFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPED-------------NPNATHI 231 (378)
Q Consensus 165 ~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~-------------~~~~~vv 231 (378)
.+.++|+||.+.- ...... ..+|.+|+||+.+++||+|.|+||+|.|.+.... ...+++|
T Consensus 98 ---~~~i~~~Ik~~~~-~~~~~~---~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~il 170 (300)
T PTZ00319 98 ---KGYVDFLIKVYFK-GVHPSF---PNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFA 170 (300)
T ss_pred ---CCEEEEEEEEecc-CCCCCC---CCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeeccccccccccccceEE
Confidence 3789999997400 000000 0469999999889999999999999998664310 0125799
Q ss_pred EEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeecc-ccccCCCcc
Q 017070 232 MIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSRE-QKNKKGGKM 310 (378)
Q Consensus 232 ~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~-~~~~~~~~~ 310 (378)
||||||||||+++|+++++....+ ..+++|+|++|+.++++|.++|.+++ +++ +++++++++++ ...|.+..|
T Consensus 171 lIAgGtGIaP~~sml~~l~~~~~~----~~~i~liyg~r~~~dl~~~~eL~~~~-~~~-~~~~~~~~~~~~~~~~~~~~G 244 (300)
T PTZ00319 171 MIAGGTGITPMLQIIHAIKKNKED----RTKVFLVYANQTEDDILLRKELDEAA-KDP-RFHVWYTLDREATPEWKYGTG 244 (300)
T ss_pred EEecCcccCHHHHHHHHHHhCCCC----CceEEEEEecCCHHHhhHHHHHHHHh-hCC-CEEEEEEECCCCCCCcccccc
Confidence 999999999999999998865422 24799999999999999999999954 555 89999999874 456777788
Q ss_pred chhHHHHhhHHHHHhccC------CCeEEEEeCCCCcHH-HHHHHHHHHHHHcCCCHHHH
Q 017070 311 YVQDKIEEYSDEIFKRLD------GGAHIYFCGLKGMMP-GIQETLKRVAEQRGESWDQK 363 (378)
Q Consensus 311 ~v~~~i~~~~~~l~~~~~------~~~~vyvCGp~~m~~-~v~~~L~~~g~~~g~~~~~~ 363 (378)
+++..+.+. .+...+ .+..||+|||++|++ ++.+.|++ .|++.+++
T Consensus 245 ~v~~~~l~~---~~~~~~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~----~G~~~~~i 297 (300)
T PTZ00319 245 YVDEEMLRA---HLPVPDPQNSGIKKVMALMCGPPPMLQMAVKPNLEK----IGYTADNM 297 (300)
T ss_pred eeCHHHHHh---hcCCccccccccCCeEEEEECCHHHHHHHHHHHHHH----cCCCHHHE
Confidence 887654321 111111 346899999999999 45667754 56666554
No 54
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=5.4e-34 Score=282.76 Aligned_cols=218 Identities=29% Similarity=0.446 Sum_probs=175.7
Q ss_pred CCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCC-CCCCCCCCCCCC
Q 017070 150 HNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSG-KIMLLPEDNPNA 228 (378)
Q Consensus 150 ~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G-~~~~~~~~~~~~ 228 (378)
..+|+|||+|+|.. .++.++|+|+.+.|.++... ...+.|.+|+||+++++||+|.+.++.| .|.+.. +...
T Consensus 175 l~pR~YSIsSsp~~---~~~~~~l~v~vv~~~~~~~~--~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~--~~~~ 247 (406)
T cd06202 175 LQPRYYSISSSPDM---YPGEIHLTVAVVSYRTRDGQ--GPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPE--DPSV 247 (406)
T ss_pred cCCcccccCCCccC---CCCeEEEEEEEEEEECCCCC--CCcccccHHHHHHhCCCCCEEEEEEeeCCccCCCC--CCCC
Confidence 68999999999964 24789999988655432111 1125799999999999999999988654 555543 3568
Q ss_pred cEEEEecCCcchhhHHHHHHHHhcc---CCCcccCCeEEEEEeecCC-CCcccHHHHHHHHhhCCCceEEEEEeeccccc
Q 017070 229 THIMIATGTGIAPFRGYLRRMFMES---VPTYKFGGLAWLFLGVANP-DSLLYDDEFTKYLQDYPDNFRYDKALSREQKN 304 (378)
Q Consensus 229 ~vv~IAgGtGiaP~~sil~~~~~~~---~~~~~~~~~v~L~~g~r~~-~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~ 304 (378)
|+||||+|||||||++|+++..... ....+..++++||||+|+. .|++|.+||++|.+.+. ++++++++||++..
T Consensus 248 piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~-~~~~~~a~SR~~~~ 326 (406)
T cd06202 248 PVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV-LTEVYTALSREPGK 326 (406)
T ss_pred CEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC-CceEEEEEcCCCCC
Confidence 9999999999999999999864321 0000113789999999999 78999999999998876 88999999997542
Q ss_pred cCCCccchhHHHHhhHHHHHhcc-CCCeEEEEeCCCCcHHHHHHHHHHHHHHcC----CCHHHHHHHHHHcCCeEEeeC
Q 017070 305 KKGGKMYVQDKIEEYSDEIFKRL-DGGAHIYFCGLKGMMPGIQETLKRVAEQRG----ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 305 ~~~~~~~v~~~i~~~~~~l~~~~-~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g----~~~~~~~~~l~~~~r~~~e~~ 378 (378)
.++|||+.+.+..+++++.+ ..++.||+|||+.|+++|+++|.++..+.| ..+++++++|+++|||++|||
T Consensus 327 ---~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l~~~gRy~~dvw 402 (406)
T cd06202 327 ---PKTYVQDLLKEQAESVYDALVREGGHIYVCGDVTMAEDVSQTIQRILAEHGNMSAEEAEEFILKLRDENRYHEDIF 402 (406)
T ss_pred ---CCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 47899999998888877765 578899999999999999999999988765 567789999999999999999
No 55
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=7e-34 Score=259.14 Aligned_cols=201 Identities=20% Similarity=0.287 Sum_probs=158.1
Q ss_pred eEEEEeeCCCC-ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCC
Q 017070 115 TCHIVIDHGGN-VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKS 193 (378)
Q Consensus 115 v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~ 193 (378)
+++|+|+.+.+ +.|+||||+.|.+++.+ ....|+|||+|.|.++ +.++|+||..
T Consensus 9 ~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~------~~~~r~ySi~s~~~~~----~~l~l~vk~~--------------- 63 (216)
T cd06198 9 TTTLTLEPRGPALGHRAGQFAFLRFDASG------WEEPHPFTISSAPDPD----GRLRFTIKAL--------------- 63 (216)
T ss_pred eEEEEEeeCCCCCCcCCCCEEEEEeCCCC------CCCCCCcEEecCCCCC----CeEEEEEEeC---------------
Confidence 88999998776 78999999999987531 1478999999988642 6899999975
Q ss_pred CchhhHhh-cCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCC
Q 017070 194 GICSNFLC-NSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANP 272 (378)
Q Consensus 194 G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~ 272 (378)
|.+|++|+ ++++|++|.|+||+|.|.+.+ ..+++|||||||||||+++|++++...+. .++++|+|++|+.
T Consensus 64 G~~t~~l~~~l~~G~~v~i~gP~G~~~~~~---~~~~~vlia~GtGiap~~~~l~~~~~~~~-----~~~v~l~~~~r~~ 135 (216)
T cd06198 64 GDYTRRLAERLKPGTRVTVEGPYGRFTFDD---RRARQIWIAGGIGITPFLALLEALAARGD-----ARPVTLFYCVRDP 135 (216)
T ss_pred ChHHHHHHHhCCCCCEEEEECCCCCCcccc---cCceEEEEccccCHHHHHHHHHHHHhcCC-----CceEEEEEEECCH
Confidence 78999999 699999999999999987765 26899999999999999999999887643 2579999999999
Q ss_pred CCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHH
Q 017070 273 DSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRV 352 (378)
Q Consensus 273 ~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~ 352 (378)
++++|.++|++|.+++ ++++++..++. ..|.+.. ..+. .... ......||+|||++|++++++.|.+.
T Consensus 136 ~~~~~~~~l~~l~~~~--~~~~~~~~~~~-~~~~~~~----~~~~----~~~~-~~~~~~vyicGp~~m~~~v~~~l~~~ 203 (216)
T cd06198 136 EDAVFLDELRALAAAA--GVVLHVIDSPS-DGRLTLE----QLVR----ALVP-DLADADVWFCGPPGMADALEKGLRAL 203 (216)
T ss_pred HHhhhHHHHHHHHHhc--CeEEEEEeCCC-Ccccchh----hhhh----hcCC-CcCCCeEEEECcHHHHHHHHHHHHHc
Confidence 9999999999999886 78887765543 2232211 1110 1111 12567999999999999999988764
Q ss_pred HHHcCCCHHHHH
Q 017070 353 AEQRGESWDQKL 364 (378)
Q Consensus 353 g~~~g~~~~~~~ 364 (378)
|++.+.++
T Consensus 204 ----Gv~~~~I~ 211 (216)
T cd06198 204 ----GVPARRFH 211 (216)
T ss_pred ----CCChHhcc
Confidence 55555443
No 56
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=6.2e-34 Score=264.68 Aligned_cols=205 Identities=21% Similarity=0.292 Sum_probs=165.7
Q ss_pred EeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEe
Q 017070 100 IVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRA 178 (378)
Q Consensus 100 V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~ 178 (378)
|+++++++++ +++|+|+.+. ...|+||||+.|.+++.+ .+...|+|||+|.|.+ .+.++|+||..
T Consensus 1 V~~~~~~t~~-----v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~-----~~~~~R~ySi~s~~~~----~~~l~l~v~~~ 66 (246)
T cd06218 1 VLSNREIADD-----IYRLVLEAPEIAAAAKPGQFVMLRVPDGS-----DPLLRRPISIHDVDPE----EGTITLLYKVV 66 (246)
T ss_pred CcceeEecCC-----eEEEEEeCcchhccCCCCcEEEEEeCCCC-----CCcCCCceEeeeccCC----CCEEEEEEEEE
Confidence 5678999998 9999999887 578999999999987521 2247899999998853 27899999976
Q ss_pred eeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcc
Q 017070 179 VYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYK 258 (378)
Q Consensus 179 ~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~ 258 (378)
|.+|++|+++++|++|.|+||+|.++..++ ...++|||||||||||+++|++++...+
T Consensus 67 ---------------G~~s~~l~~l~~Gd~v~i~gP~G~~~~~~~--~~~~~vlIagGtGIaP~~s~l~~~~~~~----- 124 (246)
T cd06218 67 ---------------GKGTRLLSELKAGDELDVLGPLGNGFDLPD--DDGKVLLVGGGIGIAPLLFLAKQLAERG----- 124 (246)
T ss_pred ---------------CcchHHHhcCCCCCEEEEEecCCCCcCCCC--CCCcEEEEecccCHHHHHHHHHHHHhcC-----
Confidence 778999999999999999999998665552 4689999999999999999999987632
Q ss_pred cCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCC
Q 017070 259 FGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGL 338 (378)
Q Consensus 259 ~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp 338 (378)
++++|+|++|+.++++|.++|++|.. ++ .. .++ ..|.+..+++++.+.+...+ ..+..||+|||
T Consensus 125 --~~v~l~~~~r~~~d~~~~~eL~~l~~----~~--~~-~~~--~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp 188 (246)
T cd06218 125 --IKVTVLLGFRSADDLFLVEEFEALGA----EV--YV-ATD--DGSAGTKGFVTDLLKELLAE-----ARPDVVYACGP 188 (246)
T ss_pred --CceEEEEEccchhhhhhHHHHHhhCC----cE--EE-EcC--CCCCCcceehHHHHHHHhhc-----cCCCEEEEECC
Confidence 46999999999999999999999842 22 22 222 23556678888876654332 15679999999
Q ss_pred CCcHHHHHHHHHHHHHHc
Q 017070 339 KGMMPGIQETLKRVAEQR 356 (378)
Q Consensus 339 ~~m~~~v~~~L~~~g~~~ 356 (378)
++|++++++.|++.|...
T Consensus 189 ~~mv~~~~~~L~~~Gv~~ 206 (246)
T cd06218 189 EPMLKAVAELAAERGVPC 206 (246)
T ss_pred HHHHHHHHHHHHhcCCCE
Confidence 999999999998766543
No 57
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.3e-33 Score=259.49 Aligned_cols=225 Identities=21% Similarity=0.263 Sum_probs=191.0
Q ss_pred CCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC---CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCC
Q 017070 92 PKEPYTATIVSVERVVGAKAPGETCHIVIDHGG---NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDG 168 (378)
Q Consensus 92 ~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~ 168 (378)
+...++.++++.+.+++| +..++|..+. .+....|||+.+..+..+ ....|+||..|.+.+ .
T Consensus 48 ~~~~~~~~l~~k~~~shd-----t~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g------~~vvRpYTPvs~~~~----~ 112 (286)
T KOG0534|consen 48 PESYYPFRLIDKTELSHD-----TSLFRFVLPSADHVLGLPIGQHVVLKAPIGG------KLVVRPYTPVSLDDD----K 112 (286)
T ss_pred CcceEEEEEEEEEeccCC-----ceeEEEecCCchhccCcccceEEEEEecCCC------cEEEEecCCccCccc----c
Confidence 335799999999999998 8888888763 478999999999887642 258999999998864 3
Q ss_pred CEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHH
Q 017070 169 KTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRR 248 (378)
Q Consensus 169 ~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~ 248 (378)
+.++|.||.+ .+|.+|++|..|++||+|.++||.|.+.+.+. ..+.+.|||||||||||++++++
T Consensus 113 g~~~l~VK~Y-------------~~G~mS~~l~~LkiGd~ve~rGP~G~~~~~~~--~~~~l~miAgGtGItPmlqii~~ 177 (286)
T KOG0534|consen 113 GYFDLVVKVY-------------PKGKMSQHLDSLKIGDTVEFRGPIGEFKYDPQ--KAKHLGMIAGGTGITPMLQLIRA 177 (286)
T ss_pred ceEEEEEEec-------------cCCcccHHHhcCCCCCEEEEecCccceEecCC--CcceEEEEecccchhhHHHHHHH
Confidence 7999999998 88999999999999999999999999999873 47899999999999999999999
Q ss_pred HHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHH-hhHHHHHhcc
Q 017070 249 MFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIE-EYSDEIFKRL 327 (378)
Q Consensus 249 ~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~-~~~~~l~~~~ 327 (378)
.+....+ ..+++|+|++++.+|+++++||+.+++++|++|.++++++.++..|.+..||+..-+. +.+ ....
T Consensus 178 il~~~~d----~tki~lly~N~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l---~~~~ 250 (286)
T KOG0534|consen 178 ILKDPED----TTKISLLYANKTEDDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHL---PPPK 250 (286)
T ss_pred HhcCCCC----CcEEEEEEecCCccccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHhhC---CCCC
Confidence 9887654 3679999999999999999999999999999999999999999999999999975443 221 1111
Q ss_pred CCCeEEEEeCCCCcHH-HHHHHHHHHH
Q 017070 328 DGGAHIYFCGLKGMMP-GIQETLKRVA 353 (378)
Q Consensus 328 ~~~~~vyvCGp~~m~~-~v~~~L~~~g 353 (378)
+....+++|||++|++ ++...|.++|
T Consensus 251 ~~~~~~liCGPp~m~~~~~~~~le~Lg 277 (286)
T KOG0534|consen 251 EGETLVLICGPPPMINGAAQGNLEKLG 277 (286)
T ss_pred CCCeEEEEECCHHHHhHHHHHHHHhcC
Confidence 1258999999999998 4666665554
No 58
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=100.00 E-value=1.3e-33 Score=264.61 Aligned_cols=214 Identities=21% Similarity=0.316 Sum_probs=168.3
Q ss_pred CeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEE
Q 017070 95 PYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLC 174 (378)
Q Consensus 95 ~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~ 174 (378)
+++++|+++.+++++ ++.|+++. ++.|+||||+.|.+++. ..|+|||++.+ .+.++|+
T Consensus 5 ~~~~~v~~~~~~t~~-----~~~~~~~~--~~~~~pGQ~v~l~~~~~---------~~~pySi~~~~------~~~l~~~ 62 (261)
T TIGR02911 5 PFKSEILEIIKHTDI-----EYTFRMSY--DGPVKPGQFFEVSLPKY---------GEAPISVSGIG------EGYIDLT 62 (261)
T ss_pred CceEEEEEEeeccCC-----EEEEEcCC--CCCCCCCcEEEEEecCC---------CccceecCCCC------CCeEEEE
Confidence 578999999999998 88888865 46799999999999863 35899999843 2689999
Q ss_pred EEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccC
Q 017070 175 VRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESV 254 (378)
Q Consensus 175 Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~ 254 (378)
||.. |.+|.+|+++++||+|.|+||+|.+|..+. ...+++|||||||||||+++|+++++....
T Consensus 63 Vk~~---------------G~~S~~L~~l~~Gd~v~i~gP~G~~f~~~~-~~~~~~llIAgGtGIaP~~sil~~l~~~~~ 126 (261)
T TIGR02911 63 IRRV---------------GKVTDEVFTLKEGDNLFLRGPYGNGFDVDN-YKHKELVVVAGGTGVAPVKGVVEYFVKNPK 126 (261)
T ss_pred EEeC---------------chhhHHHHcCCCCCEEEEecCCCCCcccCc-cCCceEEEEecccCcHHHHHHHHHHHhCcc
Confidence 9975 899999999999999999999999544332 245799999999999999999999876542
Q ss_pred CCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEE
Q 017070 255 PTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIY 334 (378)
Q Consensus 255 ~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vy 334 (378)
. .++++|+|++|+.++++|.+||++|.+++ ++. +.++++...|.+..|++.+.+.+.. ... ..+.+||
T Consensus 127 ~----~~~v~L~~~~r~~~~~~~~~eL~~l~~~~--~~~--~~~~~~~~~~~~~~g~v~~~l~~~~---~~~-~~~~~v~ 194 (261)
T TIGR02911 127 E----IKSLNLILGFKTPDDILFKEDIAEWKGNI--NLT--LTLDEAEEDYKGNIGLVTKYIPELT---LKD-IEEVQAI 194 (261)
T ss_pred c----CceEEEEEecCCHHHhhHHHHHHHHHhcC--cEE--EEEcCCCCCCcCCeeccCHhHHhcc---CCC-ccceEEE
Confidence 2 25799999999999999999999998754 444 4455555566666777776544310 011 1457899
Q ss_pred EeCCCCcHHHHHHHHHHHHHHcCCCHHH
Q 017070 335 FCGLKGMMPGIQETLKRVAEQRGESWDQ 362 (378)
Q Consensus 335 vCGp~~m~~~v~~~L~~~g~~~g~~~~~ 362 (378)
+|||++|++++++.|.+. |++.+.
T Consensus 195 lCGp~~mv~~~~~~L~~~----Gv~~~~ 218 (261)
T TIGR02911 195 VVGPPIMMKFTVQELLKK----GIKEEN 218 (261)
T ss_pred EECCHHHHHHHHHHHHHc----CCCHHH
Confidence 999999999999888764 555544
No 59
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=2.2e-33 Score=261.45 Aligned_cols=205 Identities=25% Similarity=0.350 Sum_probs=175.4
Q ss_pred EEEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEE
Q 017070 97 TATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCV 175 (378)
Q Consensus 97 ~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~I 175 (378)
.++|.+++.++++ ++.++|+.+.. +.|+||||+.|+.|+ ...||||+++.+.+. +.++|+|
T Consensus 9 ~~~I~~~~~is~~-----~~~l~~~~~~~~~~~~pGQfv~l~~~~---------~~~~P~si~~~~~~~----g~~~l~i 70 (252)
T COG0543 9 SYKVVEKEEISPD-----TFLLRLRLPFVALTFKPGQFVMLRVPG---------GVRRPYSLASAPDDK----GELELHI 70 (252)
T ss_pred ccEEEEEEEecCc-----eEEEEEeccccccccCCCcEEEEEeCC---------CcEEEeeeccCCCcC----CcEEEEE
Confidence 5999999999998 88999888765 689999999999998 278999999998753 7889999
Q ss_pred EEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCC
Q 017070 176 RRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVP 255 (378)
Q Consensus 176 r~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~ 255 (378)
+.. +.|.+|.+|+.+++||.|.+.||+|++++.++ ..+++++||||||+||++++++++...+ .
T Consensus 71 ~~~-------------~~G~~T~~i~~~k~gd~i~v~GP~G~~~~~~~--~~~~vlliagGtG~aPl~~i~~~~~~~~-~ 134 (252)
T COG0543 71 RVY-------------EVGKVTKYIFGLKEGDKIRVRGPLGNGFLREK--IGKPVLLIAGGTGIAPLYAIAKELKEKG-D 134 (252)
T ss_pred EEE-------------eCChHHHHHhhccCCCEEEEEcCCCCCccccc--cCCcEEEEecccCHhHHHHHHHHHHhcC-C
Confidence 887 78999999999999999999999999999874 3566999999999999999999998765 3
Q ss_pred CcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccch-hHHHHhhHHHHHhccCCCeEEE
Q 017070 256 TYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYV-QDKIEEYSDEIFKRLDGGAHIY 334 (378)
Q Consensus 256 ~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v-~~~i~~~~~~l~~~~~~~~~vy 334 (378)
..+++++||+|+.+++++.++|+++..+ +++++++ ++|.|.+|++ ++.+.+... .+...+|
T Consensus 135 ----~~~V~~~~G~~~~~dl~~~~el~~~~~~-----~~~~~~~---~~~~G~~G~v~~~~~~~~~~------~~~~~v~ 196 (252)
T COG0543 135 ----ANKVTLLYGARTAKDLLLLDELEELAEK-----EVHPVTD---DGWKGRKGFVTTDVLKELLD------LEVDDVY 196 (252)
T ss_pred ----CceEEEEEeccChhhcccHHHHHHhhcC-----cEEEEEC---CCCCccCcceeHHHHhhhcc------ccCCEEE
Confidence 3679999999999999999999999864 4555554 6788899999 666554321 1568999
Q ss_pred EeCCCCcHHHHHHHHHHHH
Q 017070 335 FCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 335 vCGp~~m~~~v~~~L~~~g 353 (378)
+|||+.|++++.+.+.+.+
T Consensus 197 ~cGp~~M~~~v~~~~~~~g 215 (252)
T COG0543 197 ICGPPAMVKAVREKLKEYG 215 (252)
T ss_pred EECCHHHHHHHHHHHHhcC
Confidence 9999999999988887654
No 60
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=100.00 E-value=3.9e-33 Score=259.95 Aligned_cols=203 Identities=25% Similarity=0.330 Sum_probs=165.6
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
+++.++|+++++++++ +++|+|+.+..+.|+||||+.|.++..+ +...|+|||+|.| + +.++|
T Consensus 3 ~~~~~~V~~~~~~t~d-----~~~l~l~~~~~~~~~pGQ~v~l~~~~~~------~~~~r~ySi~s~~-~-----~~l~l 65 (250)
T PRK00054 3 KPENMKIVENKEIAPN-----IYTLVLDGEKVFDMKPGQFVMVWVPGVE------PLLERPISISDID-K-----NEITI 65 (250)
T ss_pred CceEEEEEEEEEecCC-----eEEEEEeCccccCCCCCcEEEEEeCCCC------CcCceeeEEeeeC-C-----CEEEE
Confidence 4578999999999998 9999999776678999999999987632 1368999999988 3 78999
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhcc
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMES 253 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~ 253 (378)
+||.. |.+|.+|+++++|++|.|.||+|..+..+. ..+++|||||||||||+++|++++...+
T Consensus 66 ~Vk~~---------------G~~t~~l~~l~~G~~v~i~gP~G~~f~l~~--~~~~~vlIagG~GiaP~~s~l~~~~~~~ 128 (250)
T PRK00054 66 LYRKV---------------GEGTKKLSKLKEGDELDIRGPLGNGFDLEE--IGGKVLLVGGGIGVAPLYELAKELKKKG 128 (250)
T ss_pred EEEEc---------------ChHHHHHhcCCCCCEEEEEcccCCCCCCCC--CCCeEEEEeccccHHHHHHHHHHHHHcC
Confidence 99975 889999999999999999999998544442 4579999999999999999999987643
Q ss_pred CCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEE
Q 017070 254 VPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHI 333 (378)
Q Consensus 254 ~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~v 333 (378)
.+++|+|++|+.++++|.++|+++. ++. + .+ ++.|.+..+++++.+.+.. .....|
T Consensus 129 -------~~v~l~~~~r~~~d~~~~~el~~~~-----~~~--~-~~--~~~~~~~~g~v~~~l~~~~-------~~~~~v 184 (250)
T PRK00054 129 -------VEVTTVLGARTKDEVIFEEEFAKVG-----DVY--V-TT--DDGSYGFKGFVTDVLDELD-------SEYDAI 184 (250)
T ss_pred -------CcEEEEEEcCCHHHhhhHHHHHhcC-----CEE--E-Ee--cCCCCCcccchhHhHhhhc-------cCCCEE
Confidence 3589999999999999999999853 221 1 12 2345566778887665421 245689
Q ss_pred EEeCCCCcHHHHHHHHHHHHH
Q 017070 334 YFCGLKGMMPGIQETLKRVAE 354 (378)
Q Consensus 334 yvCGp~~m~~~v~~~L~~~g~ 354 (378)
|+|||++|++++++.|.+.|+
T Consensus 185 yvCGp~~m~~~v~~~l~~~Gv 205 (250)
T PRK00054 185 YSCGPEIMMKKVVEILKEKKV 205 (250)
T ss_pred EEeCCHHHHHHHHHHHHHcCC
Confidence 999999999999999987654
No 61
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=100.00 E-value=9.7e-33 Score=250.56 Aligned_cols=195 Identities=18% Similarity=0.282 Sum_probs=155.6
Q ss_pred eEEEEecCCCCCCceEEEEeeCCCC---ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEE
Q 017070 101 VSVERVVGAKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRR 177 (378)
Q Consensus 101 ~~~~~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~ 177 (378)
++++.++++ +++|+|+.+.. ..|+||||+.|.+++ ...|+|||+|.|.+ .+.++|+||.
T Consensus 1 ~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---------~~~r~ySi~s~~~~----~~~l~~~v~~ 62 (211)
T cd06185 1 VRIRDEAPD-----IRSFELEAPDGAPLPAFEPGAHIDVHLPN---------GLVRQYSLCGDPAD----RDRYRIAVLR 62 (211)
T ss_pred CceEEcCCC-----eEEEEEEeCCCCcCCCCCCCceEEEEcCC---------CCceeeeccCCCCC----CCEEEEEEEe
Confidence 367889998 99999999865 389999999999876 26799999999864 3789999998
Q ss_pred eeeecCCCCCCCCCCCCc-hhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCC
Q 017070 178 AVYYDPESGKEDPSKSGI-CSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVP 255 (378)
Q Consensus 178 ~~~~~~~~~~~~~~~~G~-~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~ 255 (378)
. .+|. +|.||++ +++||+|.|+||+|.|.+.+ ..+++||||+||||||+++|++++....
T Consensus 63 ~-------------~~g~~~s~~l~~~~~~Gd~v~i~gP~g~f~~~~---~~~~~v~ia~GtGiap~~~il~~~~~~~-- 124 (211)
T cd06185 63 E-------------PASRGGSRYMHELLRVGDELEVSAPRNLFPLDE---AARRHLLIAGGIGITPILSMARALAARG-- 124 (211)
T ss_pred c-------------cCCCchHHHHHhcCCCCCEEEEcCCccCCcCCC---CCCcEEEEeccchHhHHHHHHHHHHhCC--
Confidence 6 5443 8999986 89999999999999988765 3579999999999999999999987532
Q ss_pred CcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEE
Q 017070 256 TYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYF 335 (378)
Q Consensus 256 ~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyv 335 (378)
++++|+|++|+.++++|.++|+++. .. ++++.+ +++. ++..+.+.+. ...++..||+
T Consensus 125 -----~~v~l~~~~r~~~~~~~~~~l~~~~--~~-~~~~~~--~~~~-----~~~~~~~~~~--------~~~~~~~vyi 181 (211)
T cd06185 125 -----ADFELHYAGRSREDAAFLDELAALP--GD-RVHLHF--DDEG-----GRLDLAALLA--------APPAGTHVYV 181 (211)
T ss_pred -----CCEEEEEEeCCCcchhHHHHHhhhc--CC-cEEEEE--CCCC-----CccCHHHHhc--------cCCCCCEEEE
Confidence 4699999999999999999999997 33 666654 3321 2233333332 2234679999
Q ss_pred eCCCCcHHHHHHHHHHHHH
Q 017070 336 CGLKGMMPGIQETLKRVAE 354 (378)
Q Consensus 336 CGp~~m~~~v~~~L~~~g~ 354 (378)
|||+.|++++++.|.+.|+
T Consensus 182 cGp~~m~~~~~~~l~~~gv 200 (211)
T cd06185 182 CGPEGMMDAVRAAAAALGW 200 (211)
T ss_pred ECCHHHHHHHHHHHHHcCC
Confidence 9999999999998876543
No 62
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=100.00 E-value=9.5e-33 Score=261.49 Aligned_cols=202 Identities=20% Similarity=0.184 Sum_probs=162.9
Q ss_pred EEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 98 ATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 98 a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
++|+++++++++ ++.|+|+.+.. ..|+||||+.|.+++.+ .+|+|||+|.+.+ .+.++|+||
T Consensus 2 ~~I~~~~~~t~~-----~~~l~l~~~~~~~~~~pGQfv~l~~~~~~--------~~rpySias~~~~----~~~i~l~vk 64 (281)
T PRK06222 2 YKILEKEELAPN-----VFLMEIEAPRVAKKAKPGQFVIVRIDEKG--------ERIPLTIADYDRE----KGTITIVFQ 64 (281)
T ss_pred cEEEEEEEecCC-----EEEEEEeCchhhccCCCCeEEEEEeCCCC--------CceeeEeeEEcCC----CCEEEEEEE
Confidence 589999999998 99999987653 57999999999986532 4689999998754 378999999
Q ss_pred EeeeecCCCCCCCCCCCCchhhHhhcCCCCCEE-EEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCC
Q 017070 177 RAVYYDPESGKEDPSKSGICSNFLCNSKPGDKV-LITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVP 255 (378)
Q Consensus 177 ~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~ 255 (378)
.. |.+|.+|+++++||+| .|.||+|+++..+ ..+++||||||+||||++++++++...+
T Consensus 65 ~~---------------G~~T~~L~~l~~Gd~v~~i~GP~G~~~~~~---~~~~~llIaGGiGiaPl~~l~~~l~~~~-- 124 (281)
T PRK06222 65 AV---------------GKSTRKLAELKEGDSILDVVGPLGKPSEIE---KFGTVVCVGGGVGIAPVYPIAKALKEAG-- 124 (281)
T ss_pred eC---------------CcHHHHHhcCCCCCEEeeEEcCCCCCcccC---CCCeEEEEeCcCcHHHHHHHHHHHHHCC--
Confidence 75 8999999999999999 7999999988754 2479999999999999999999886543
Q ss_pred CcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEE
Q 017070 256 TYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYF 335 (378)
Q Consensus 256 ~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyv 335 (378)
.+++|+|++|+.++++|.++|.++... + +. .+ +++|.+..|++++.+.+...+ ......||+
T Consensus 125 -----~~v~l~~g~r~~~d~~~~~el~~~~~~----~--~v-~~--~d~~~g~~G~v~~~l~~~~~~----~~~~~~vy~ 186 (281)
T PRK06222 125 -----NKVITIIGARNKDLLILEDEMKAVSDE----L--YV-TT--DDGSYGRKGFVTDVLKELLES----GKKVDRVVA 186 (281)
T ss_pred -----CeEEEEEecCCHHHhhcHHHHHhhCCe----E--EE-Ec--CCCCcCcccchHHHHHHHhhc----CCCCcEEEE
Confidence 369999999999999999999988642 2 22 22 235677788888766543221 112467999
Q ss_pred eCCCCcHHHHHHHHHHHHH
Q 017070 336 CGLKGMMPGIQETLKRVAE 354 (378)
Q Consensus 336 CGp~~m~~~v~~~L~~~g~ 354 (378)
|||++|++++.+.|.+.++
T Consensus 187 CGP~~M~~~v~~~l~~~gv 205 (281)
T PRK06222 187 IGPVIMMKFVAELTKPYGI 205 (281)
T ss_pred ECCHHHHHHHHHHHHhcCC
Confidence 9999999999998876644
No 63
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=100.00 E-value=4.9e-33 Score=259.00 Aligned_cols=202 Identities=19% Similarity=0.189 Sum_probs=161.8
Q ss_pred EEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 98 ATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 98 a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
++|+++++++++ ++.|+|+.+.. ..|+||||+.|.++.. ...|+|||+|.|.+ .+.++|+||
T Consensus 1 ~~v~~~~~~t~d-----~~~~~l~~~~~~~~~~pGQf~~l~~~~~--------~~~~pySi~s~~~~----~~~~~~~vk 63 (248)
T cd06219 1 YKILEKEELAPN-----VKLFEIEAPLIAKKAKPGQFVIVRADEK--------GERIPLTIADWDPE----KGTITIVVQ 63 (248)
T ss_pred CEEEEEEEeCCC-----eEEEEEEChhhhccCCCCcEEEEEcCCC--------CCccceEeEEEcCC----CCEEEEEEE
Confidence 478999999998 99999998653 5799999999998643 25689999998754 278999999
Q ss_pred EeeeecCCCCCCCCCCCCchhhHhhcCCCCCEE-EEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCC
Q 017070 177 RAVYYDPESGKEDPSKSGICSNFLCNSKPGDKV-LITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVP 255 (378)
Q Consensus 177 ~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~ 255 (378)
.. |.+|.+|.++++|++| .++||+|.+++.+ ..+++||||||+||||+++|++++...+
T Consensus 64 ~~---------------G~~t~~l~~l~~G~~v~~i~gP~G~~~~~~---~~~~~lliagG~GiaP~~~~l~~~~~~~-- 123 (248)
T cd06219 64 VV---------------GKSTRELATLEEGDKIHDVVGPLGKPSEIE---NYGTVVFVGGGVGIAPIYPIAKALKEAG-- 123 (248)
T ss_pred eC---------------CchHHHHHhcCCCCEeeeeecCCCCCeecC---CCCeEEEEeCcccHHHHHHHHHHHHHcC--
Confidence 74 8899999889999999 6999999988754 3579999999999999999999987643
Q ss_pred CcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEE
Q 017070 256 TYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYF 335 (378)
Q Consensus 256 ~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyv 335 (378)
++++|+|++|+.++++|.+||++|.++ . +. .++ ..|.+..|++.+.+.+.... ......||+
T Consensus 124 -----~~v~l~~~~r~~~~~~~~~el~~l~~~----~--~~-~~~--~~~~~~~g~v~~~l~~~~~~----~~~~~~vyi 185 (248)
T cd06219 124 -----NRVITIIGARTKDLVILEDEFRAVSDE----L--II-TTD--DGSYGEKGFVTDPLKELIES----GEKVDLVIA 185 (248)
T ss_pred -----CeEEEEEEcCCHHHhhhHHHHHhhcCe----E--EE-EeC--CCCCCccccchHHHHHHHhc----cCCccEEEE
Confidence 469999999999999999999999643 1 22 233 23556677887766543321 124458999
Q ss_pred eCCCCcHHHHHHHHHHHHH
Q 017070 336 CGLKGMMPGIQETLKRVAE 354 (378)
Q Consensus 336 CGp~~m~~~v~~~L~~~g~ 354 (378)
|||++|++++.+.|.+.|+
T Consensus 186 CGP~~m~~~~~~~l~~~Gv 204 (248)
T cd06219 186 IGPPIMMKAVSELTRPYGI 204 (248)
T ss_pred ECCHHHHHHHHHHHHHcCC
Confidence 9999999999998876543
No 64
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=7.6e-33 Score=280.94 Aligned_cols=220 Identities=41% Similarity=0.685 Sum_probs=187.6
Q ss_pred CCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCC
Q 017070 149 PHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNA 228 (378)
Q Consensus 149 ~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~ 228 (378)
.+++|+|||+|+|.. ..+.+++++-.+.|.+| ++ .+.+.|.||+||.++++|+.+..-+|.+.+.+....++..
T Consensus 419 ~L~pR~YSIssS~~~---~~~~vhl~~~vv~~~~~-dg--~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~frlp~dp~~ 492 (645)
T KOG1158|consen 419 RLQPRYYSISSSPKV---HPNEVHLTVTVVEYGTP-DG--GPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMFRLPSDPST 492 (645)
T ss_pred cccccccccccCccc---CCCEEEEEEEEeeeccC-CC--CCccceehhhhHHhcCCccccCcceeecccceecCCCCCC
Confidence 368999999999875 35788888877544443 32 3457799999999999999998777777765544335789
Q ss_pred cEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCC-CcccHHHHHHHHhhCCCceEEEEEeeccccccCC
Q 017070 229 THIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPD-SLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKG 307 (378)
Q Consensus 229 ~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~-~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~ 307 (378)
|+||||.|||||||++++++++....++.++...+|||+|+|+.+ |.+|.+||+++.+..- ++++..++||++. +
T Consensus 493 PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~-l~~l~~A~SReq~---~ 568 (645)
T KOG1158|consen 493 PIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGI-LTRLDVAFSREQT---P 568 (645)
T ss_pred cEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCc-chhheeeeeccCC---C
Confidence 999999999999999999998877655444444599999999998 5699999999976664 8999999999975 4
Q ss_pred CccchhHHHHhhHHHHHhcc-CCCeEEEEeCCCC-cHHHHHHHHHHHHHHcC----CCHHHHHHHHHHcCCeEEeeC
Q 017070 308 GKMYVQDKIEEYSDEIFKRL-DGGAHIYFCGLKG-MMPGIQETLKRVAEQRG----ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 308 ~~~~v~~~i~~~~~~l~~~~-~~~~~vyvCGp~~-m~~~v~~~L~~~g~~~g----~~~~~~~~~l~~~~r~~~e~~ 378 (378)
.+.|||+.++++.+++++.+ +++++||+||... |.+.|.++|.++..+.| +++++++++|++.+||++|||
T Consensus 569 ~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 569 KKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred CceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 68899999999999999998 4699999999998 99999999999999988 999999999999999999999
No 65
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=3.1e-32 Score=289.87 Aligned_cols=244 Identities=17% Similarity=0.205 Sum_probs=188.3
Q ss_pred CCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCCC---ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCC
Q 017070 89 LYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDS 165 (378)
Q Consensus 89 ~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~ 165 (378)
.+.+....+++|++++.++++ ++.|+|+.+.+ +.|.||||++|.++..+. ...|+||++|.+.+.
T Consensus 628 ~l~p~~~~~~~Lv~k~~lS~d-----~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~------~~~R~YSpaS~~~~~- 695 (888)
T PLN02252 628 ALNPREKIPCRLVEKISLSHD-----VRLFRFALPSEDHVLGLPVGKHVFLCATINGK------LCMRAYTPTSSDDEV- 695 (888)
T ss_pred ccccCceEEEEEEEEEEccCC-----eEEEEEEECCCcccCCCCCCCEEEEEEecCCe------EEEeeeEecccCCCC-
Confidence 345667889999999999998 99999997653 579999999998753211 368999999998643
Q ss_pred CCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCC--------CCCCCCCcEEEEecCC
Q 017070 166 FDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLL--------PEDNPNATHIMIATGT 237 (378)
Q Consensus 166 ~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~--------~~~~~~~~vv~IAgGt 237 (378)
+.++|+||.+ +..+....+ ++|.+|++|++|++|++|.|+||+|.|.+. ......++++||||||
T Consensus 696 ---g~lel~VK~~-~~~~~~~~p---~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGs 768 (888)
T PLN02252 696 ---GHFELVIKVY-FKNVHPKFP---NGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGT 768 (888)
T ss_pred ---CEEEEEEEEE-eccccCccC---CCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEecce
Confidence 7899999974 111111111 469999999999999999999999987443 1111247899999999
Q ss_pred cchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccc-cccCCCccchhHHH
Q 017070 238 GIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQ-KNKKGGKMYVQDKI 316 (378)
Q Consensus 238 GiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~-~~~~~~~~~v~~~i 316 (378)
||||+++||++++....+ ..+++|||++|+.++++|.+||++|+++++++|+++++++++. ..|.+..|++.+.+
T Consensus 769 GITPi~silr~ll~~~~d----~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~l 844 (888)
T PLN02252 769 GITPMYQVIQAILRDPED----KTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAM 844 (888)
T ss_pred ehhHHHHHHHHHHhccCC----CCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHH
Confidence 999999999998865432 3579999999999999999999999999877999999999865 67888888887654
Q ss_pred HhhHHHHHhccCCCeEEEEeCCCCcHH-HHHHHHHHHHHHcCCCHHH
Q 017070 317 EEYSDEIFKRLDGGAHIYFCGLKGMMP-GIQETLKRVAEQRGESWDQ 362 (378)
Q Consensus 317 ~~~~~~l~~~~~~~~~vyvCGp~~m~~-~v~~~L~~~g~~~g~~~~~ 362 (378)
.+ ++.........+|+|||++|++ +++..|.+ .|++.+.
T Consensus 845 l~---~~l~~~~~~~~vyiCGPp~Mi~~av~~~L~~----~G~~~~~ 884 (888)
T PLN02252 845 LR---EHLPEGGDETLALMCGPPPMIEFACQPNLEK----MGYDKDS 884 (888)
T ss_pred HH---HhcccCCCCeEEEEeCCHHHHHHHHHHHHHH----cCCCHHH
Confidence 32 1111112457899999999999 46777765 4555444
No 66
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=4.7e-32 Score=250.11 Aligned_cols=199 Identities=26% Similarity=0.324 Sum_probs=158.9
Q ss_pred EEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEe
Q 017070 99 TIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRA 178 (378)
Q Consensus 99 ~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~ 178 (378)
+|+++++++++ +++|+|+.+ ..|+||||+.|.+++. ..|+|||+|.| +.++|+||+.
T Consensus 2 ~v~~~~~~t~~-----~~~~~l~~~--~~~~pGQ~v~l~~~~~---------~~~~~Si~s~~-------~~l~~~v~~~ 58 (233)
T cd06220 2 TIKEVIDETPT-----VKTFVFDWD--FDFKPGQFVMVWVPGV---------DEIPMSLSYID-------GPNSITVKKV 58 (233)
T ss_pred EEEEEEEEcCC-----EEEEEEecC--CCCCCCceEEEEeCCC---------CcceeEEecCC-------CeEEEEEEec
Confidence 78999999998 999999874 5899999999998753 35899999987 4699999875
Q ss_pred eeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcc
Q 017070 179 VYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYK 258 (378)
Q Consensus 179 ~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~ 258 (378)
|.+|+||+++++||+|.|.||+|..+..+ .+++|||||||||||+++|++++...
T Consensus 59 ---------------G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~----~~~~vliAgGtGitP~~sil~~~~~~------ 113 (233)
T cd06220 59 ---------------GEATSALHDLKEGDKLGIRGPYGNGFELV----GGKVLLIGGGIGIAPLAPLAERLKKA------ 113 (233)
T ss_pred ---------------ChHHHHHHhcCCCCEEEEECcCCCCccCC----CCeEEEEecCcChHHHHHHHHHHHhc------
Confidence 89999999999999999999999844332 47999999999999999999998754
Q ss_pred cCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCC
Q 017070 259 FGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGL 338 (378)
Q Consensus 259 ~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp 338 (378)
++++|+|++|+.++++|.+||+++ . ++.+ ... +.|.+..+++++.+.+.. ......||+|||
T Consensus 114 --~~i~l~~~~r~~~d~~~~~eL~~~----~-~~~~--~~~---~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp 175 (233)
T cd06220 114 --ADVTVLLGARTKEELLFLDRLRKS----D-ELIV--TTD---DGSYGFKGFVTDLLKELD------LEEYDAIYVCGP 175 (233)
T ss_pred --CCEEEEEecCChHHChhHHHHhhC----C-cEEE--EEe---CCCCcccceehHHHhhhc------ccCCCEEEEECC
Confidence 359999999999999999999972 1 3322 222 245556677777554422 124468999999
Q ss_pred CCcHHHHHHHHHHHHHHcCCCHHHH
Q 017070 339 KGMMPGIQETLKRVAEQRGESWDQK 363 (378)
Q Consensus 339 ~~m~~~v~~~L~~~g~~~g~~~~~~ 363 (378)
++|++++.+.|.+.|....+..|.+
T Consensus 176 ~~m~~~~~~~L~~~g~~~~i~~e~f 200 (233)
T cd06220 176 EIMMYKVLEILDERGVRAQFSLERY 200 (233)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccc
Confidence 9999999999988766444444444
No 67
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=100.00 E-value=1.3e-31 Score=248.75 Aligned_cols=200 Identities=20% Similarity=0.207 Sum_probs=158.5
Q ss_pred EeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEe
Q 017070 100 IVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRA 178 (378)
Q Consensus 100 V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~ 178 (378)
|+++++++++ +++|+|+.+. .+.|+||||+.|.++..+ ....|+|||+|.+.+. +.++|+||..
T Consensus 1 i~~~~~~t~~-----~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~------~~~~rpySi~s~~~~~----~~l~l~i~~~ 65 (243)
T cd06192 1 IVKKEQLEPN-----LVLLTIKAPLAARLFRPGQFVFLRNFESP------GLERIPLSLAGVDPEE----GTISLLVEIR 65 (243)
T ss_pred CceEEEecCC-----EEEEEEEccchhhcCCCCCeEEEecCCCC------CceeeeeEeeecCCCC----CEEEEEEEEc
Confidence 4678899998 9999999875 368999999999986421 1368999999998543 7899999975
Q ss_pred eeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcc
Q 017070 179 VYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYK 258 (378)
Q Consensus 179 ~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~ 258 (378)
|.+|+||.++++|++|.|.||+|.+++.+. ..+++|||||||||||+++|++++...+
T Consensus 66 ---------------G~~t~~l~~~~~G~~l~i~gP~G~~~~~~~--~~~~~lliagGtGiap~~~~l~~~~~~~----- 123 (243)
T cd06192 66 ---------------GPKTKLIAELKPGEKLDVMGPLGNGFEGPK--KGGTVLLVAGGIGLAPLLPIAKKLAANG----- 123 (243)
T ss_pred ---------------CchHHHHHhCCCCCEEEEEccCCCCCccCC--CCCEEEEEeCcccHHHHHHHHHHHHHCC-----
Confidence 889999999999999999999999887652 3579999999999999999999987652
Q ss_pred cCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCC
Q 017070 259 FGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGL 338 (378)
Q Consensus 259 ~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp 338 (378)
++++|+|++|+.+++++.+||+++. .+. +.+++ ++|.+..++++..... .. ......||+|||
T Consensus 124 --~~v~l~~~~r~~~d~~~~~el~~~~-----~~~--~~~~~--~~~~~~~g~v~~~~~~-----~~-~~~~~~v~icGp 186 (243)
T cd06192 124 --NKVTVLAGAKKAKEEFLDEYFELPA-----DVE--IWTTD--DGELGLEGKVTDSDKP-----IP-LEDVDRIIVAGS 186 (243)
T ss_pred --CeEEEEEecCcHHHHHHHHHHHhhc-----CeE--EEEec--CCCCccceeechhhhh-----hh-cccCCEEEEECC
Confidence 4799999999999999999998872 222 22333 3455556666543111 11 123468999999
Q ss_pred CCcHHHHHHHHHHHH
Q 017070 339 KGMMPGIQETLKRVA 353 (378)
Q Consensus 339 ~~m~~~v~~~L~~~g 353 (378)
++|++++++.|++.|
T Consensus 187 ~~mv~~~~~~l~~~g 201 (243)
T cd06192 187 DIMMKAVVEALDEWL 201 (243)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998875
No 68
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.98 E-value=5.1e-32 Score=253.14 Aligned_cols=210 Identities=25% Similarity=0.329 Sum_probs=172.4
Q ss_pred CCCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEE
Q 017070 93 KEPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTAS 172 (378)
Q Consensus 93 ~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~ 172 (378)
..+|.++|+..++.+.+ +.+++....++..|+||||..|.++..+ ....+||||||++... .+++
T Consensus 213 s~~y~~~vt~~~r~~~~-----t~eit~~l~~~~~~qaGQFAfLk~~~~~-----~~~~~HPFTIa~s~~~-----sel~ 277 (438)
T COG4097 213 SFPYLGKVTAPQRGNVD-----TLEITIGLQGPWLYQAGQFAFLKIEIEE-----FRMRPHPFTIACSHEG-----SELR 277 (438)
T ss_pred ccccceEEechhhcCcc-----hheeecccCCcccccCCceEEEEecccc-----ccCCCCCeeeeeCCCC-----ceEE
Confidence 46799999999999998 9999999988877999999999998743 1135899999998753 5899
Q ss_pred EEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHh
Q 017070 173 LCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFM 251 (378)
Q Consensus 173 l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~ 251 (378)
|.||.. |.+|+-|.+ +++|+++.|+||||.|..... ..+.|+||||+|||||+|+++.+..
T Consensus 278 FsIK~L---------------GD~Tk~l~dnLk~G~k~~vdGPYG~F~~~~g---~~~QVWIAGGIGITPFis~l~~l~~ 339 (438)
T COG4097 278 FSIKAL---------------GDFTKTLKDNLKVGTKLEVDGPYGKFDFERG---LNTQVWIAGGIGITPFISMLFTLAE 339 (438)
T ss_pred EEehhh---------------hhhhHHHHHhccCCceEEEecCcceeecccC---CcccEEEecCcCcchHHHHHHhhcc
Confidence 999987 999999998 999999999999999988762 3449999999999999999999876
Q ss_pred ccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchh-HHHHhhHHHHHhccCCC
Q 017070 252 ESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQ-DKIEEYSDEIFKRLDGG 330 (378)
Q Consensus 252 ~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~-~~i~~~~~~l~~~~~~~ 330 (378)
+.. .++|+|+|++|+.++..|.+||+++++++| |+.+|..-|. ..||+. +.++.+.+ .+..
T Consensus 340 ~~s-----~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~-~~~lHiiDSs-------~~g~l~~e~ler~~~-----~~~~ 401 (438)
T COG4097 340 RKS-----DPPVHLFYCSRNWEEALYAEELRALAQKLP-NVVLHIIDSS-------KDGYLDQEDLERYPD-----RPRT 401 (438)
T ss_pred ccc-----CCceEEEEEecCCchhHHHHHHHHHHhcCC-CeEEEEecCC-------CCCccCHHHhhcccc-----ccCc
Confidence 443 368999999999999999999999999998 8988883332 345543 22332211 1234
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHH
Q 017070 331 AHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 331 ~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
..||+|||++|++.+++.|++..
T Consensus 402 ~sv~fCGP~~m~dsL~r~l~~~~ 424 (438)
T COG4097 402 RSVFFCGPIKMMDSLRRDLKKQN 424 (438)
T ss_pred ceEEEEcCHHHHHHHHHHHHHcC
Confidence 48999999999999999987654
No 69
>PRK05802 hypothetical protein; Provisional
Probab=99.98 E-value=2e-31 Score=256.03 Aligned_cols=210 Identities=14% Similarity=0.173 Sum_probs=160.0
Q ss_pred CCCCeEEEEeEEEEecCCCCCCceEEEEeeCCCC---ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCC
Q 017070 92 PKEPYTATIVSVERVVGAKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDG 168 (378)
Q Consensus 92 ~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~ 168 (378)
+.+.++++|++++.++++ +++|+|+.+.. ..|+||||++|++++.+ +...|||||++.+.+ .
T Consensus 61 ~~~~~~~~I~~~~~~t~d-----v~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~------~~~~rP~SI~~~~~~----~ 125 (320)
T PRK05802 61 GRKTYECKIIKKENIEDN-----LIILTLKVPHKLARDLVYPGSFVFLRNKNSS------SFFDVPISIMEADTE----E 125 (320)
T ss_pred ccccEeEEEEEEEEecCC-----EEEEEEECCchhhhccCCCCceEEEEEcCCC------CEeEEeeEecccCCC----C
Confidence 346789999999999998 99999998754 34799999999987532 145799999999864 3
Q ss_pred CEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCC--CCCCCC-CCCCCcEEEEecCCcchhhHHH
Q 017070 169 KTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGK--IMLLPE-DNPNATHIMIATGTGIAPFRGY 245 (378)
Q Consensus 169 ~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~--~~~~~~-~~~~~~vv~IAgGtGiaP~~si 245 (378)
+.++|+||.. |.+|++|+++++||+|.|.||+|+ |.+.+. ....+++||||||+||||+++|
T Consensus 126 g~l~l~ik~~---------------G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l 190 (320)
T PRK05802 126 NIIKVAIEIR---------------GVKTKKIAKLNKGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPV 190 (320)
T ss_pred CEEEEEEEec---------------ChhHHHHhcCCCCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHH
Confidence 7899999976 999999999999999999999965 433210 1134689999999999999999
Q ss_pred HHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHh
Q 017070 246 LRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFK 325 (378)
Q Consensus 246 l~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~ 325 (378)
++++...+ .+++|+||+|+.++++|.++|+++..+.. ++++ +.+...++ +.++++.+.+.+
T Consensus 191 ~~~l~~~~-------~~v~li~g~r~~~~~~~~~el~~~~~~~~-~~~~---~ddG~~~~-~~~g~v~~~l~~------- 251 (320)
T PRK05802 191 IKKLYSNG-------NKIIVIIDKGPFKNNFIKEYLELYNIEII-ELNL---LDDGELSE-EGKDILKEIIKK------- 251 (320)
T ss_pred HHHHHHcC-------CcEEEEEeCCCHHHHHHHHHHHHhhCceE-EEEe---cccCCCCc-cccchHHHHhcC-------
Confidence 99987654 35999999999999999999999865432 2211 12111111 123444444332
Q ss_pred ccCCCeEEEEeCCCCcHHHHHHHHHHH
Q 017070 326 RLDGGAHIYFCGLKGMMPGIQETLKRV 352 (378)
Q Consensus 326 ~~~~~~~vyvCGp~~m~~~v~~~L~~~ 352 (378)
. +...||+|||+.|++++.+.|.++
T Consensus 252 -~-~~~~vy~CGP~~M~k~v~~~l~~~ 276 (320)
T PRK05802 252 -E-DINLIHCGGSDILHYKIIEYLDKL 276 (320)
T ss_pred -C-CCCEEEEECCHHHHHHHHHHHhhh
Confidence 1 336799999999999999988764
No 70
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.97 E-value=3.1e-31 Score=242.47 Aligned_cols=191 Identities=19% Similarity=0.249 Sum_probs=144.6
Q ss_pred EEEEecCCCCCCceEEEEeeCCCC---ccccCCcEEEEeCCCCCCCC-----CC-----CCCCceecccccCCCCCCCCC
Q 017070 102 SVERVVGAKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENPKK-----PG-----NPHNVRLYSIASTRYGDSFDG 168 (378)
Q Consensus 102 ~~~~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~~-----~g-----~~~~~R~ySias~p~~~~~~~ 168 (378)
+.+.+++| |.+|+|+.+.+ +.|+||||+.|.+++..... .. .....|+|||+|.|.++. ..
T Consensus 2 ~~~~~s~~-----v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~-~~ 75 (220)
T cd06197 2 KSEVITPT-----LTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDP-AT 75 (220)
T ss_pred cceecccc-----eeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCC-CC
Confidence 45778887 99999999876 89999999999987521000 00 113579999999996420 12
Q ss_pred CEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcC-C-C---CCEEEEEeeCCCCCCCCCC-CCCCcEEEEecCCcchhh
Q 017070 169 KTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNS-K-P---GDKVLITGPSGKIMLLPED-NPNATHIMIATGTGIAPF 242 (378)
Q Consensus 169 ~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l-~-~---Gd~v~v~GP~G~~~~~~~~-~~~~~vv~IAgGtGiaP~ 242 (378)
+.++|+||.. |.+|++|+++ . + |++|.|.||+|.|.+.... +..+++|||||||||||+
T Consensus 76 ~~l~l~vk~~---------------G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~ 140 (220)
T cd06197 76 DEFEITVRKK---------------GPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPF 140 (220)
T ss_pred CEEEEEEEeC---------------CCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhH
Confidence 6899999975 8999999884 3 3 9999999999999875411 135789999999999999
Q ss_pred HHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHH
Q 017070 243 RGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDE 322 (378)
Q Consensus 243 ~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~ 322 (378)
++|+++++..... ..+++|+|++|+.++++|.+||.++.+. .+.+....
T Consensus 141 ~sil~~l~~~~~~----~~~v~l~~~~r~~~~~~~~~el~~~~~~---~~~~~~~~------------------------ 189 (220)
T cd06197 141 LAMLRAILSSRNT----TWDITLLWSLREDDLPLVMDTLVRFPGL---PVSTTLFI------------------------ 189 (220)
T ss_pred HHHHHHHHhcccC----CCcEEEEEEecchhhHHHHHHHHhccCC---ceEEEEEE------------------------
Confidence 9999998765321 2579999999999999999999776531 12222110
Q ss_pred HHhccCCCeEEEEeCCCCcHHHHHHHHHH
Q 017070 323 IFKRLDGGAHIYFCGLKGMMPGIQETLKR 351 (378)
Q Consensus 323 l~~~~~~~~~vyvCGp~~m~~~v~~~L~~ 351 (378)
...||+|||++|++++.+.+.+
T Consensus 190 -------~~~v~~CGP~~m~~~~~~~~~~ 211 (220)
T cd06197 190 -------TSEVYLCGPPALEKAVLEWLEG 211 (220)
T ss_pred -------eccEEEECcHHHHHHHHHHhhh
Confidence 1179999999999999888764
No 71
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.97 E-value=1.3e-30 Score=287.51 Aligned_cols=227 Identities=16% Similarity=0.208 Sum_probs=180.5
Q ss_pred CCCCCeEEEEeEEE---EecCCCCCCceEEEEeeCCCC---ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCC
Q 017070 91 KPKEPYTATIVSVE---RVVGAKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGD 164 (378)
Q Consensus 91 ~~~~~~~a~V~~~~---~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~ 164 (378)
.+++..+++|++++ +++++ ++.|+|+.+.. +.|.|||||.|.++..+ . ...|+||++|.|.+
T Consensus 910 ~~~~w~~~~l~~~~~~~~~~~~-----~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g-----~-~~~R~YS~~S~p~~- 977 (1167)
T PTZ00306 910 SKDKWTTVVVREVREGGQFGTG-----SRVLRFNLPGALQRSGLTLGQFIAIRGDWDG-----Q-QLIGYYSPITLPDD- 977 (1167)
T ss_pred CCCceEEEEEEEEeccccccCC-----eEEEEEECCCcccccCCCCCeEEEEEeeeCC-----e-EEEEEeccCCCCCC-
Confidence 35677899999997 56777 99999988753 47999999999875321 1 35799999999964
Q ss_pred CCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCC----------CCCCCCCCCCCcEEEEe
Q 017070 165 SFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGK----------IMLLPEDNPNATHIMIA 234 (378)
Q Consensus 165 ~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~----------~~~~~~~~~~~~vv~IA 234 (378)
.+.++|+||. ++|.+|+||+++++||+|.|+||+|. |.+.+ ...+++||||
T Consensus 978 ---~~~i~l~Vr~--------------~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~--~~~~~ivlIA 1038 (1167)
T PTZ00306 978 ---LGVISILARG--------------DKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFRG--HVIRKLALIA 1038 (1167)
T ss_pred ---CCeEEEEEEc--------------CCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeecc--CCCceEEEEE
Confidence 3689999974 67999999988999999999998873 33332 2457899999
Q ss_pred cCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhH
Q 017070 235 TGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQD 314 (378)
Q Consensus 235 gGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~ 314 (378)
||||||||++|+++++.+.... ...+++|||++|+.++++|.+||++|+++++++|++++++++++..|.+..|++.+
T Consensus 1039 GGtGItP~~sml~~~l~~~~~~--~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~ 1116 (1167)
T PTZ00306 1039 GGTGVAPMLQIIRAALKKPYVD--SIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDR 1116 (1167)
T ss_pred CCccHhHHHHHHHHHHhCcccC--CCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCH
Confidence 9999999999999988654210 02579999999999999999999999999986799999999887788877888876
Q ss_pred HHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 315 KIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 315 ~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
.+.+ +++.....+..||+|||++|++++++.|.+.|
T Consensus 1117 ~~l~---~~l~~~~~~~~vyiCGP~~mv~~v~~~L~~~G 1152 (1167)
T PTZ00306 1117 ALLQ---SALQPPSKDLLVAICGPPVMQRAVKADLLALG 1152 (1167)
T ss_pred HHHH---HhcCCCCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 4322 11111224678999999999999998887643
No 72
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=99.97 E-value=5e-29 Score=239.67 Aligned_cols=262 Identities=28% Similarity=0.461 Sum_probs=216.4
Q ss_pred CCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCC--------------------------
Q 017070 91 KPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP-------------------------- 143 (378)
Q Consensus 91 ~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~-------------------------- 143 (378)
.+....+++++.++++|+.+...||.+|.|+.++ ...|.||.-+.|.+.+.+.
T Consensus 192 ~~~~~~~~k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~ 271 (574)
T KOG1159|consen 192 EPQGQIPAKLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDR 271 (574)
T ss_pred ccccccccchhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCcc
Confidence 3455666999999999999999999999999987 6889999999998765431
Q ss_pred -------------------------------------------C---------CCC------------------------
Q 017070 144 -------------------------------------------K---------KPG------------------------ 147 (378)
Q Consensus 144 -------------------------------------------~---------~~g------------------------ 147 (378)
+ ..|
T Consensus 272 ~~~~~~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~s 351 (574)
T KOG1159|consen 272 SSPLPLLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRS 351 (574)
T ss_pred cccccccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchh
Confidence 0 000
Q ss_pred ------------CCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeC
Q 017070 148 ------------NPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPS 215 (378)
Q Consensus 148 ------------~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~ 215 (378)
....+|.|||||.|.. -.++|+|-.+.|.+ ...++ +.|.||+||++|++|+.|.+.---
T Consensus 352 v~lp~~yl~d~~P~IrPR~fSIas~~~~-----~~leL~VAiV~ykT-~l~~p---RrGlCS~wl~sL~~g~~i~~~v~~ 422 (574)
T KOG1159|consen 352 VKLPIDYLLDLLPVIRPRAFSIASSPGA-----HHLELLVAIVEYKT-ILKEP---RRGLCSNWLASLKPGDEIPIKVRP 422 (574)
T ss_pred ccCCHHHHHHhccccccceeeeccCCCC-----CceeEEEEEEEEee-ecccc---ccchhHHHHhhcCCCCeEEEEEec
Confidence 2457999999999975 45999998865544 44444 899999999999999999999988
Q ss_pred CCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCC-CcccHHHHHHHHhhCCCceEE
Q 017070 216 GKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPD-SLLYDDEFTKYLQDYPDNFRY 294 (378)
Q Consensus 216 G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~-~~~~~del~~l~~~~~~~~~~ 294 (378)
|.+.+.. +.+.|+|||+.|||+||+++++++....+. ....||+|+|+.+ |++|.++|.++... -+
T Consensus 423 g~l~~p~--~~~~PlImVGPGTGvAPfRa~i~er~~q~~------~~~~lFfGCR~K~~Df~y~~eW~~~~~~-----~~ 489 (574)
T KOG1159|consen 423 GTLYFPS--DLNKPLIMVGPGTGVAPFRALIQERIYQGD------KENVLFFGCRNKDKDFLYEDEWTELNKR-----AF 489 (574)
T ss_pred CccccCC--CCCCCeEEEcCCCCcccHHHHHHHHHhhcc------CCceEEEecccCCccccccchhhhhhcc-----hh
Confidence 9877765 357899999999999999999998876443 2458999999997 89999999888754 35
Q ss_pred EEEeeccccccCCCccchhHHHHhhHHHHHhccC-CCeEEEEeCCC-CcHHHHHHHHHHHHHHcC-C--CHHHHHHHHHH
Q 017070 295 DKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLD-GGAHIYFCGLK-GMMPGIQETLKRVAEQRG-E--SWDQKLSQLKK 369 (378)
Q Consensus 295 ~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~-~~~~vyvCGp~-~m~~~v~~~L~~~g~~~g-~--~~~~~~~~l~~ 369 (378)
+.++||+++ .+.|||+.+.+..+++++.+. .++.||+||+. .|-.+|.++|.++..+.+ . +...+++.|+|
T Consensus 490 ~~AFSRDqe----~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~~l~~lek 565 (574)
T KOG1159|consen 490 HTAFSRDQE----QKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVASYLKALEK 565 (574)
T ss_pred hhhcccccc----cceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Confidence 668999986 578999999999999999885 88999999976 699999999999966654 3 23348899999
Q ss_pred cCCeEEeeC
Q 017070 370 NKQWHVEVY 378 (378)
Q Consensus 370 ~~r~~~e~~ 378 (378)
.+||+.|+|
T Consensus 566 t~ryq~ETW 574 (574)
T KOG1159|consen 566 TRRYQQETW 574 (574)
T ss_pred hccccccCC
Confidence 999999999
No 73
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.96 E-value=1.7e-29 Score=233.29 Aligned_cols=203 Identities=13% Similarity=0.169 Sum_probs=150.3
Q ss_pred EeEEEEecCCCCCCceEEEEeeCCCC---ccccCCcEEEEeCCCCCC-----------C--CCCCCCCceecccccCCCC
Q 017070 100 IVSVERVVGAKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENP-----------K--KPGNPHNVRLYSIASTRYG 163 (378)
Q Consensus 100 V~~~~~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~-----------~--~~g~~~~~R~ySias~p~~ 163 (378)
|+++++++++ +++|+|+.+.. ..|.||||+.|.++..+. . ..+.+...|+|||++.+.+
T Consensus 1 V~~~~~~s~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~ 75 (235)
T cd06193 1 VVRVERLTPH-----MRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE 75 (235)
T ss_pred CceeEecCCC-----EEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC
Confidence 5788999998 99999998764 579999999999875310 0 0001246899999998754
Q ss_pred CCCCCCEEEEEEEEeeeecCCCCCCCCCCC-CchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhh
Q 017070 164 DSFDGKTASLCVRRAVYYDPESGKEDPSKS-GICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPF 242 (378)
Q Consensus 164 ~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~-G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~ 242 (378)
.++++|.|+.. .+ |.+|+||+++++||+|.+.||+|.|++.+ ..+++||||+||||||+
T Consensus 76 ----~~~l~~~v~~~-------------~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~---~~~~~vlia~GtGi~p~ 135 (235)
T cd06193 76 ----AGELDIDFVLH-------------GDEGPASRWAASAQPGDTLGIAGPGGSFLPPP---DADWYLLAGDETALPAI 135 (235)
T ss_pred ----CCEEEEEEEeC-------------CCCCchHHHHhhCCCCCEEEEECCCCCCCCCC---CcceEEEEeccchHHHH
Confidence 37899999886 55 89999999999999999999999998854 35789999999999999
Q ss_pred HHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHH
Q 017070 243 RGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDE 322 (378)
Q Consensus 243 ~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~ 322 (378)
++|++++... .++++++++|+.+++++.+++ + +++++.+.+++... +..+.. +. ..
T Consensus 136 ~~il~~~~~~--------~~~~~~~~~~~~~d~~~l~~~-------~-~~~~~~~~~~~~~~--~~~~~~---~~---~~ 191 (235)
T cd06193 136 AAILEELPAD--------ARGTALIEVPDAADEQPLPAP-------A-GVEVTWLHRGGAEA--GELALL---AV---RA 191 (235)
T ss_pred HHHHHhCCCC--------CeEEEEEEECCHHHccccCCC-------C-CcEEEEEeCCCCCc--chhHHH---HH---hc
Confidence 9999987532 369999999998665443332 2 67777766544321 111111 11 11
Q ss_pred HHhccCCCeEEEEeCCCCcHHHHHHHHHHH
Q 017070 323 IFKRLDGGAHIYFCGLKGMMPGIQETLKRV 352 (378)
Q Consensus 323 l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~ 352 (378)
.........+|+|||++|++++++.|.+.
T Consensus 192 -~~~~~~~~~vyicGp~~mv~~v~~~l~~~ 220 (235)
T cd06193 192 -LAPPAGDGYVWIAGEAGAVRALRRHLREE 220 (235)
T ss_pred -ccCCCCCeEEEEEccHHHHHHHHHHHHHc
Confidence 11112467999999999999999998753
No 74
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.96 E-value=6.5e-29 Score=267.60 Aligned_cols=218 Identities=20% Similarity=0.198 Sum_probs=169.5
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTAS 172 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~ 172 (378)
..+.++|++++.++++ ++.|+|+.+.. ..|+||||+.|.++..+ ..|+|||++.+.+ .+.++
T Consensus 647 ~~~~~~I~~~~~lt~d-----v~~~~l~~p~~~~~~~PGQFv~L~~~~~g--------e~rP~SIas~~~~----~g~i~ 709 (944)
T PRK12779 647 GQIPQTIVGKVQLAGG-----IVEFTVRAPMVARSAQAGQFVRVLPWEKG--------ELIPLTLADWDAE----KGTID 709 (944)
T ss_pred cceEEEEEEEEEecCC-----EEEEEEeCCCccccCCCCceEEEEeCCCC--------CEEeEEccCCCCC----CCEEE
Confidence 4788999999999998 99999988754 47999999999875422 4699999998753 37899
Q ss_pred EEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEE-EEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHh
Q 017070 173 LCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVL-ITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFM 251 (378)
Q Consensus 173 l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~-v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~ 251 (378)
|+|+.+ |.+|.+|.++++||.|. |.||+|.++..+.....+++||||||+||||+++|++++..
T Consensus 710 l~Vk~v---------------G~~T~~L~~lk~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~ 774 (944)
T PRK12779 710 LVVQGM---------------GTSSLEINRMAIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLR 774 (944)
T ss_pred EEEEee---------------ccHHHHHhcCCCcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHH
Confidence 999976 88899898899999995 99999998754321124689999999999999999999876
Q ss_pred ccCCCcccCCeEEEEEeecCCCCcccHHH---HHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccC
Q 017070 252 ESVPTYKFGGLAWLFLGVANPDSLLYDDE---FTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLD 328 (378)
Q Consensus 252 ~~~~~~~~~~~v~L~~g~r~~~~~~~~de---l~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~ 328 (378)
.+ .+++|+||+|+.+++++.++ |.+|++.+++.++++++ + +++|.+.+|++++.+.+...+......
T Consensus 775 ~g-------~~V~li~G~Rs~edl~~~del~~L~~la~~~~~~~~v~~t-t--ddgs~G~~G~Vt~~l~~ll~~~~~~~~ 844 (944)
T PRK12779 775 LG-------NHVTLISGFRAKEFLFWTGDDERVGKLKAEFGDQLDVIYT-T--NDGSFGVKGFVTGPLEEMLKANQQGKG 844 (944)
T ss_pred CC-------CCEEEEEEeCCHHHhhhHHHHHHHHHHHHHcCCCeEEEEE-e--cCCCCCCccccChHHHHHHHhcccccc
Confidence 54 36999999999999888765 56677777755665544 3 235677788888876554332100000
Q ss_pred -CCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 329 -GGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 329 -~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
....||+|||++||+++.+.|.+.|
T Consensus 845 ~~~~~Vy~CGP~~Mmkav~~~l~~~G 870 (944)
T PRK12779 845 RTIAEVIAIGPPLMMRAVSDLTKPYG 870 (944)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 1367999999999999988886554
No 75
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=4.9e-29 Score=265.58 Aligned_cols=202 Identities=19% Similarity=0.193 Sum_probs=164.4
Q ss_pred EEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 98 ATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 98 a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
.+|+++++++++ ++.|+|+.+.. ..|+||||++|++++.+ ..|+|||+|.+.+ .+.++|+|+
T Consensus 2 ~~I~~~~~~t~~-----v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--------~~rp~Si~~~~~~----~g~i~~~vk 64 (752)
T PRK12778 2 NKIVEKEIFSEK-----VFLLEIEAPLIAKSRKPGQFVIVRVGEKG--------ERIPLTIADADPE----KGTITLVIQ 64 (752)
T ss_pred CEEEEEEEEcCC-----EEEEEEeCCchhccCCCCeeEEEEeCCCC--------CeeEEEeeeeCCC----CCEEEEEEE
Confidence 478999999998 99999997653 57999999999987532 4689999999864 378999999
Q ss_pred EeeeecCCCCCCCCCCCCchhhHhhcCCCCCEE-EEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCC
Q 017070 177 RAVYYDPESGKEDPSKSGICSNFLCNSKPGDKV-LITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVP 255 (378)
Q Consensus 177 ~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~ 255 (378)
.+ |.+|.+|+++++||.| .|.||+|+++..+ ..+++||||||+||||++++++++...+
T Consensus 65 ~v---------------G~~T~~L~~l~~Gd~v~~v~GP~G~~~~~~---~~~~~llvaGG~GiaPl~~l~~~l~~~~-- 124 (752)
T PRK12778 65 EV---------------GLSTTKLCELNEGDYITDVVGPLGNPSEIE---NYGTVVCAGGGVGVAPMLPIVKALKAAG-- 124 (752)
T ss_pred Ec---------------CchHHHHhcCCCCCEeCeEeCCCCCCccCC---CCCeEEEEECCEeHHHHHHHHHHHHHCC--
Confidence 86 9999999999999999 7999999998864 2479999999999999999999987654
Q ss_pred CcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEE
Q 017070 256 TYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYF 335 (378)
Q Consensus 256 ~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyv 335 (378)
.+++||||+|+.++++|.++|.+|..+ + ++ .+ +++|.+.+|++++.+.+.... ......||+
T Consensus 125 -----~~v~l~~g~r~~~~l~~~~el~~~~~~----~--~~-~t--~dg~~g~~G~v~~~l~~~~~~----~~~~~~vy~ 186 (752)
T PRK12778 125 -----NRVITILGGRSKELIILEDEMRESSDE----V--II-MT--DDGSYGRKGLVTDGLEEVIKR----ETKVDKVFA 186 (752)
T ss_pred -----CeEEEEeccCCHHHhhhHHHHHhhcCe----E--EE-EE--CCCCCCCcccHHHHHHHHhhc----CCCCCEEEE
Confidence 369999999999999999999988642 2 22 22 345777888988876554321 112357999
Q ss_pred eCCCCcHHHHHHHHHHHHH
Q 017070 336 CGLKGMMPGIQETLKRVAE 354 (378)
Q Consensus 336 CGp~~m~~~v~~~L~~~g~ 354 (378)
|||++|++++.+.|.+.|+
T Consensus 187 CGP~~M~~~v~~~l~~~gv 205 (752)
T PRK12778 187 IGPAIMMKFVCLLTKKYGI 205 (752)
T ss_pred ECCHHHHHHHHHHHHHcCC
Confidence 9999999999998876543
No 76
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.95 E-value=1.5e-27 Score=216.29 Aligned_cols=179 Identities=19% Similarity=0.215 Sum_probs=137.6
Q ss_pred eEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCC
Q 017070 115 TCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSG 194 (378)
Q Consensus 115 v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G 194 (378)
+++++|..+..+.|+||||+.|.++... ..+++|+|||+|.+.+. .+.++|+||.. +|
T Consensus 12 ~~~l~~~~~~~~~~~pGq~v~l~~~~~~-----~~~~~hpfsias~~~~~---~~~i~~~vk~~--------------~G 69 (210)
T cd06186 12 VIRLTIPKPKPFKWKPGQHVYLNFPSLL-----SFWQSHPFTIASSPEDE---QDTLSLIIRAK--------------KG 69 (210)
T ss_pred EEEEEEecCCCCccCCCCEEEEEeCCCC-----CCcccCCcEeeeCCCCC---CCEEEEEEEec--------------CC
Confidence 9999999988889999999999998740 12578999999998641 27899999974 47
Q ss_pred chhhHhhcCC------CCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEe
Q 017070 195 ICSNFLCNSK------PGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLG 268 (378)
Q Consensus 195 ~~S~~L~~l~------~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g 268 (378)
.+++.+..++ .|++|.|+||||.++... ...+++||||||+||||+++|++++...... ....++++|+|+
T Consensus 70 ~~t~~~~~~~~~~~~~~~~~v~v~GP~G~~~~~~--~~~~~~vliagG~GItp~~s~l~~l~~~~~~-~~~~~~v~l~w~ 146 (210)
T cd06186 70 FTTRLLRKALKSPGGGVSLKVLVEGPYGSSSEDL--LSYDNVLLVAGGSGITFVLPILRDLLRRSSK-TSRTRRVKLVWV 146 (210)
T ss_pred hHHHHHHHHHhCcCCCceeEEEEECCCCCCccCh--hhCCeEEEEeccccHhhhHHHHHHHHhhhhc-cCCccEEEEEEE
Confidence 7777777666 899999999999987332 2468999999999999999999998876421 001368999999
Q ss_pred ecCCCC-cccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHH
Q 017070 269 VANPDS-LLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQE 347 (378)
Q Consensus 269 ~r~~~~-~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~ 347 (378)
+|+.++ .+|.++|.+..+... ..+++.++++ ||+|||++|++.++.
T Consensus 147 ~r~~~~~~~~~~~l~~~~~~~~-~~~~~i~~T~--------------------------------v~~CGp~~~~~~~~~ 193 (210)
T cd06186 147 VRDREDLEWFLDELRAAQELEV-DGEIEIYVTR--------------------------------VVVCGPPGLVDDVRN 193 (210)
T ss_pred ECCHHHhHHHHHHHHhhhhccC-CceEEEEEee--------------------------------EEEECchhhccHHHH
Confidence 999988 579999975111111 1133333332 999999999999988
Q ss_pred HHHH
Q 017070 348 TLKR 351 (378)
Q Consensus 348 ~L~~ 351 (378)
.+.+
T Consensus 194 ~~~~ 197 (210)
T cd06186 194 AVAK 197 (210)
T ss_pred HHhh
Confidence 8865
No 77
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=251.85 Aligned_cols=201 Identities=18% Similarity=0.207 Sum_probs=161.0
Q ss_pred EEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 98 ATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 98 a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
.+|++++.++++ ++.++|+.|. ...|+|||||.|++++. ..+|||||++.+.+ .+.++|.|+
T Consensus 2 ~~I~~~~~l~~~-----~~~l~l~ap~~a~~~~PGQFV~l~~~~~--------~errplSIa~~~~~----~g~i~l~vk 64 (1006)
T PRK12775 2 YSIVRREAFSDT-----TFLWEVEAPDVAASAEPGHFVMLRLYEG--------AERIPLTVADFDRK----KGTITMVVQ 64 (1006)
T ss_pred cEEEEEEEecCC-----EEEEEEecCCcccCCCCCeeEEEEeCCC--------CeeEEEEecCcCCC----CCEEEEEEE
Confidence 479999999998 9999999876 35799999999998642 24799999997753 378999999
Q ss_pred EeeeecCCCCCCCCCCCCchhhHhh-cCCCCCEE-EEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccC
Q 017070 177 RAVYYDPESGKEDPSKSGICSNFLC-NSKPGDKV-LITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESV 254 (378)
Q Consensus 177 ~~~~~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v-~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~ 254 (378)
.+ |.+|.+|+ ++++||.| .+.||+|.++... ..+++||||||+||||+++|++++...+
T Consensus 65 ~v---------------G~~T~~L~~~lk~Gd~l~~v~GPlG~~~~~~---~~~~vllVaGGiGIAPl~s~~r~l~~~g- 125 (1006)
T PRK12775 65 AL---------------GKTTREMMTKFKAGDTFEDFVGPLGLPQHID---KAGHVVLVGGGLGVAPVYPQLRAFKEAG- 125 (1006)
T ss_pred ec---------------CcHHHHHHhcCCCCCEEeeeecCCCCCCCCC---CCCeEEEEEEhHHHHHHHHHHHHHHhCC-
Confidence 76 89999995 69999999 7999999987654 2478999999999999999999887654
Q ss_pred CCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEE
Q 017070 255 PTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIY 334 (378)
Q Consensus 255 ~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vy 334 (378)
.+++++||+|+.++++|.++|.++.. ++. ++ + +++|.|.+|++++.+.+.+.+ .....||
T Consensus 126 ------~~v~li~g~R~~~~l~~~del~~~~~----~~~--v~-t--ddgs~G~~G~vt~~l~~~l~~-----~~~d~vy 185 (1006)
T PRK12775 126 ------ARTTGIIGFRNKDLVFWEDKFGKYCD----DLI--VC-T--DDGSYGKPGFVTAALKEVCEK-----DKPDLVV 185 (1006)
T ss_pred ------CcEEEEEeCCChHHcccHHHHHhhcC----cEE--EE-E--CCCCCCCCCChHHHHHHHhcc-----CCCCEEE
Confidence 35999999999999999999987753 222 21 2 235677788888876653321 1235799
Q ss_pred EeCCCCcHHHHHHHHHHHHH
Q 017070 335 FCGLKGMMPGIQETLKRVAE 354 (378)
Q Consensus 335 vCGp~~m~~~v~~~L~~~g~ 354 (378)
+|||+.||+++.+.+++.++
T Consensus 186 ~CGP~~Mm~av~~~~~~~gi 205 (1006)
T PRK12775 186 AIGPLPMMNACVETTRPFGV 205 (1006)
T ss_pred EECCHHHHHHHHHHHHHCCC
Confidence 99999999999988866543
No 78
>PLN02292 ferric-chelate reductase
Probab=99.92 E-value=5.8e-24 Score=220.49 Aligned_cols=210 Identities=15% Similarity=0.125 Sum_probs=155.0
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCV 175 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~I 175 (378)
..+++.+++.++++ +++++++.+..+.|+||||+.|.+|+.+. +++|||||+|.|.+ +++.++|+|
T Consensus 325 ~~~~Iv~~~~l~~d-----vv~L~~~~~~~~~~~PGQ~vfL~~P~~s~------~q~HPFTIaSsp~~---~~~~l~l~I 390 (702)
T PLN02292 325 NNVKLVSARVLPCD-----TVELNFSKNPMLMYSPTSIMFVNIPSISK------LQWHPFTITSSSKL---EPEKLSVMI 390 (702)
T ss_pred cceEEEEEEEcCCC-----EEEEEEEcCCCCCcCCCCeEEEEEccCCc------cceeeeEeeccCCC---CCCEEEEEE
Confidence 35788999999887 99999998877899999999999986432 58999999999853 237899999
Q ss_pred EEeeeecCCCCCCCCCCCCchhhHhhc-CCCCC-----EEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHH
Q 017070 176 RRAVYYDPESGKEDPSKSGICSNFLCN-SKPGD-----KVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRM 249 (378)
Q Consensus 176 r~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd-----~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~ 249 (378)
|.. |.+|++|.+ +++|| +|.++||||.+.... ...++++|||||+||||++++++++
T Consensus 391 K~~---------------G~~T~~L~~~l~~gd~i~~~~V~VeGPYG~~~~~~--~~~~~vvlIAGGiGITP~lsil~~L 453 (702)
T PLN02292 391 KSQ---------------GKWSTKLYHMLSSSDQIDRLAVSVEGPYGPASTDF--LRHESLVMVSGGSGITPFISIIRDL 453 (702)
T ss_pred EcC---------------CchhHHHHHhCCCCCccccceEEEECCccCCcccc--ccCCcEEEEEeccCHHHHHHHHHHH
Confidence 964 888999988 88888 467999999876433 2357999999999999999999999
Q ss_pred HhccCCCcccCCeEEEEEeecCCCCcccHHHHH-------HHHhhCCCceEEEEEeeccccccC-CCccchhHHHHhhHH
Q 017070 250 FMESVPTYKFGGLAWLFLGVANPDSLLYDDEFT-------KYLQDYPDNFRYDKALSREQKNKK-GGKMYVQDKIEEYSD 321 (378)
Q Consensus 250 ~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~-------~l~~~~~~~~~~~~~~Sr~~~~~~-~~~~~v~~~i~~~~~ 321 (378)
.++..+.....++++|+|++|+.+|+++.+++. +++++. ++++..+++++++... +..+ +. +..+
T Consensus 454 ~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~--~~~i~iyvTr~~~~~~~~~~~--~~---~~~~ 526 (702)
T PLN02292 454 IYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSFI--DIQIKAFVTREKEAGVKESTG--NM---NIIK 526 (702)
T ss_pred HhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcC--CceEEEEEeCCCCCCCccccc--ch---hhhh
Confidence 765421100025799999999999998876553 233333 7888888888765432 1122 11 1122
Q ss_pred HHHhccC--CCeEEEEeCCCCcHH
Q 017070 322 EIFKRLD--GGAHIYFCGLKGMMP 343 (378)
Q Consensus 322 ~l~~~~~--~~~~vyvCGp~~m~~ 343 (378)
+.+.... ++..+.+|||+...-
T Consensus 527 ~~~~~p~~~~~~~~~~~Gp~~~~w 550 (702)
T PLN02292 527 TLWFKPNLSDQPISPILGPNSWLW 550 (702)
T ss_pred hhcCCCCCCCCceEEEeCCCchHH
Confidence 2211112 667899999998543
No 79
>PLN02631 ferric-chelate reductase
Probab=99.90 E-value=6.2e-23 Score=212.43 Aligned_cols=173 Identities=18% Similarity=0.232 Sum_probs=137.7
Q ss_pred EEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 97 TATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 97 ~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
.+++++++.++++ +.+++++.+..+.|+||||+.|.+|..+ .+++|||||+|.|.+ +++.++|+||
T Consensus 309 ~~~lv~~~~l~~d-----~l~l~~~~~~~~~~~PGQfvfL~~p~~s------~~q~HPFSIaSsp~~---~~~~L~~~IK 374 (699)
T PLN02631 309 RSRLVSARILPSD-----NLELTFSKTPGLHYTPTSILFLHVPSIS------KLQWHPFTITSSSNL---EKDTLSVVIR 374 (699)
T ss_pred eEEEEEEEEeCCC-----eEEEEEEcCCCCcCCCCceEEEEeccCC------ccceEEEEEeccCCC---CCCEEEEEEE
Confidence 3678888888876 9999998777789999999999998743 268999999999853 2378999999
Q ss_pred EeeeecCCCCCCCCCCCCchhhHhhc-CCC-CC--EEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhc
Q 017070 177 RAVYYDPESGKEDPSKSGICSNFLCN-SKP-GD--KVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFME 252 (378)
Q Consensus 177 ~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~-Gd--~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~ 252 (378)
.. |.+|++|.+ ++. |+ +|.++||||.+.... ...+++||||||+||||++|+++++..+
T Consensus 375 ~~---------------Gg~T~~L~~~l~~~g~~i~V~VeGPYG~~~~~~--~~~~~vVlIAGGsGITP~lSiL~~ll~~ 437 (699)
T PLN02631 375 RQ---------------GSWTQKLYTHLSSSIDSLEVSTEGPYGPNSFDV--SRHNSLILVSGGSGITPFISVIRELIFQ 437 (699)
T ss_pred cC---------------ChHHHHHHHhhhcCCCeeEEEEECCCCCCCCCc--CCCCcEEEEEeCcChHhHHHHHHHHHhc
Confidence 64 889999987 654 45 688999999765433 2457899999999999999999999865
Q ss_pred cCCCcccCCeEEEEEeecCCCCcccHHHHHHH------HhhCCCceEEEEEeeccc
Q 017070 253 SVPTYKFGGLAWLFLGVANPDSLLYDDEFTKY------LQDYPDNFRYDKALSREQ 302 (378)
Q Consensus 253 ~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l------~~~~~~~~~~~~~~Sr~~ 302 (378)
........++++|+|++|+.+|++|.|||..+ .++ . |+++..++||++
T Consensus 438 ~~~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~-~-ni~i~iyVTR~~ 491 (699)
T PLN02631 438 SQNPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISR-L-NLRIEAYITRED 491 (699)
T ss_pred ccccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhc-C-ceEEEEEEcCCC
Confidence 43211112479999999999999999999863 223 2 899999999964
No 80
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.89 E-value=5.7e-22 Score=206.23 Aligned_cols=206 Identities=18% Similarity=0.231 Sum_probs=147.7
Q ss_pred EEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEe
Q 017070 99 TIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRA 178 (378)
Q Consensus 99 ~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~ 178 (378)
.+++++.++++ ++++++..+..+.|+||||+.|.+|..+. .++|||||+|.|.. +++.++|+||..
T Consensus 315 ~vvs~~~~~~~-----~v~l~i~r~~~~~f~PGQfV~L~vp~~s~------~q~HPFSIaS~p~~---~~~~l~~~IK~~ 380 (722)
T PLN02844 315 CILSARLFPCK-----AIELVLPKDPGLKYAPTSVIFMKIPSISR------FQWHPFSITSSSNI---DDHTMSVIIKCE 380 (722)
T ss_pred EEEEEEEecCC-----EEEEEEECCCCCCcCCCeeEEEEECCCCc------eeEEEEEeecCCCC---CCCeEEEEEEeC
Confidence 34455556555 99999988878999999999999987432 58999999998753 236899999874
Q ss_pred eeecCCCCCCCCCCCCchhhHhhc-C----CCC------CEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHH
Q 017070 179 VYYDPESGKEDPSKSGICSNFLCN-S----KPG------DKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLR 247 (378)
Q Consensus 179 ~~~~~~~~~~~~~~~G~~S~~L~~-l----~~G------d~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~ 247 (378)
|.+|+.|.+ + ++| .++.|+||||.+.... ...++++|||||+||||++++++
T Consensus 381 ---------------gG~T~~L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~--~~~~~lVLIAGGiGITPfLSiLr 443 (722)
T PLN02844 381 ---------------GGWTNSLYNKIQAELDSETNQMNCIPVAIEGPYGPASVDF--LRYDSLLLVAGGIGITPFLSILK 443 (722)
T ss_pred ---------------CCchHHHHHHHHhhccCCCCcccceEEEEECCccCCCCCc--cCCCeEEEEEcCcCHHHHHHHHH
Confidence 556777754 3 345 3899999999875433 23579999999999999999999
Q ss_pred HHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHH-----HHhhCCCceEEEEEeeccccccCCCccchhHHHHh--hH
Q 017070 248 RMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTK-----YLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEE--YS 320 (378)
Q Consensus 248 ~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~-----l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~--~~ 320 (378)
++...+....+..++++|+|++|+.+|+.|.+++.. +.+.. +++++++++|++... ..+++.+.. ..
T Consensus 444 dl~~~~~~~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~~~~--~lkl~iyVTRE~~~~----~rl~~~i~~~~~~ 517 (722)
T PLN02844 444 EIASQSSSRYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSSNQL--NLKLKVFVTQEEKPN----ATLRELLNQFSQV 517 (722)
T ss_pred HHHhccccccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHHHhc--CceEEEEECCCCCCC----CchhhHhhccchh
Confidence 998654322222357999999999999999998853 22222 788888899986531 244454443 11
Q ss_pred HHHHhccCCCeEEEEeCCCCcH
Q 017070 321 DEIFKRLDGGAHIYFCGLKGMM 342 (378)
Q Consensus 321 ~~l~~~~~~~~~vyvCGp~~m~ 342 (378)
+++ ..-.+..++-+||+....
T Consensus 518 ~~~-~~~~~~~~~~i~G~~~~l 538 (722)
T PLN02844 518 QTV-NFSTKCSRYAIHGLESFL 538 (722)
T ss_pred hhc-CCCCCCCceEEeCCCchH
Confidence 221 112356789999998754
No 81
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.84 E-value=1.3e-20 Score=152.77 Aligned_cols=109 Identities=33% Similarity=0.484 Sum_probs=89.8
Q ss_pred EEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccc
Q 017070 232 MIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMY 311 (378)
Q Consensus 232 ~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~ 311 (378)
|||||||||||++|+++++..+. .++++|+||+|+.++++|.++|.++.++++.+|+++.+ ++.+.+|.+..++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERND-----NRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTC-----TSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHhCC-----CCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 79999999999999999987743 37899999999999999999999999999844777666 6666778888999
Q ss_pred hhHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHH
Q 017070 312 VQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQE 347 (378)
Q Consensus 312 v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~ 347 (378)
+++.+.+.... ......+..||+|||++|++++++
T Consensus 75 v~~~~~~~~~~-~~~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 75 VTDLLLEDLLP-EKIDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHHH-HHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred hhHHHHHhhcc-cccCCCCCEEEEECCHHHHHHhcC
Confidence 99988553332 112247889999999999998864
No 82
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.83 E-value=2.6e-21 Score=174.24 Aligned_cols=217 Identities=18% Similarity=0.285 Sum_probs=144.9
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCC----ccccCCcEEEEe--CCCCCCCCCCCCCCceecccccCCCCCCCC
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGN----VPYWEGQSYGVI--PPGENPKKPGNPHNVRLYSIASTRYGDSFD 167 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~----~~~~pGQ~v~l~--~~~~~~~~~g~~~~~R~ySias~p~~~~~~ 167 (378)
...+.+|++.+..+.| +..+.+.+..+ .+..|||||.+. +++-+. ...|.||.++.... -
T Consensus 148 G~~~F~vT~~~~~sSD-----v~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~------k~~~~~~~S~~~~t---~ 213 (385)
T KOG3378|consen 148 GEVEFKVTELINESSD-----VKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSH------KTLREYSLSNRVDT---C 213 (385)
T ss_pred Cccceeeeeeeccccc-----eeEEEecCCCcceeeccCCCCceEEEeecCCccch------hHHHHHHHhhhhhh---h
Confidence 4467899999999998 99999987543 458899999984 344221 13455555444321 1
Q ss_pred CCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCC-CCCCCcEEEEecCCcchhhHHH
Q 017070 168 GKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPE-DNPNATHIMIATGTGIAPFRGY 245 (378)
Q Consensus 168 ~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~-~~~~~~vv~IAgGtGiaP~~si 245 (378)
.+.+.|.||++ .+|.+|+|+++ +++||.|.++.|-|+|.+..+ .+.++|++|+|||+||||+++|
T Consensus 214 rN~~R~sVr~~-------------A~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~i 280 (385)
T KOG3378|consen 214 RNQFRISVRRV-------------AGGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPI 280 (385)
T ss_pred ccceeEEEeeh-------------hchhhHHHhhccccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHH
Confidence 26799999998 88999999998 999999999999999987442 2456999999999999999999
Q ss_pred HHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHH-HHH
Q 017070 246 LRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSD-EIF 324 (378)
Q Consensus 246 l~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~-~l~ 324 (378)
++..+.-. ..| .+...+.++..++..+.+..-.++.+.... ....+++.+...++ +.+
T Consensus 281 iE~~~~C~--------------~~R-----P~~~~~~~~~~K~k~~~K~~e~~~~E~s~~--~~~IV~~~~~~iI~~~~L 339 (385)
T KOG3378|consen 281 IETALLCY--------------SSR-----PFKQWLEQLKLKYKENLKLKEFFSEESSVT--KEQIVDEVMTRIINEEDL 339 (385)
T ss_pred HHHHHhcC--------------CCC-----cHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhhhhhhhhhhhcCHHHh
Confidence 99875422 222 233333333333322222222233332211 11223333332221 111
Q ss_pred hcc-CCCeEEEEeCCCCcHHHHHHHHHHHHHHcCC
Q 017070 325 KRL-DGGAHIYFCGLKGMMPGIQETLKRVAEQRGE 358 (378)
Q Consensus 325 ~~~-~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~ 358 (378)
+.+ ....+||+|||..+|+++...|.+++++...
T Consensus 340 ~~~~~s~~DiY~~G~~~~M~~~~~~L~~L~~~~~~ 374 (385)
T KOG3378|consen 340 EKLDLSECDIYMLGPNNYMRFVKQELVKLGVEPNK 374 (385)
T ss_pred hhcChhhCceeeeCcHHHHHHHHHHHHHhcCCccc
Confidence 222 2678999999999999999999999876553
No 83
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=5.1e-18 Score=176.69 Aligned_cols=225 Identities=16% Similarity=0.195 Sum_probs=156.4
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCV 175 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~I 175 (378)
...++.++.-+..+ +.++++..|..+.|+||||+.|.+|.... +++|||||+|+|++ +.++++|
T Consensus 355 ~~~~i~~~~llp~~-----vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~------~qwHPFTItSsp~d-----d~lsvhI 418 (646)
T KOG0039|consen 355 KNVKIAKVVLLPSD-----VLELIMSKPPGFKYKPGQYIFVNCPSLSK------LEWHPFTITSAPED-----DFLSVHI 418 (646)
T ss_pred cCceEEEEEEcCCC-----eEEEEEeCCCCCCCCCCCEEEEECccccc------cccCCceeecCCCC-----CEEEEEE
Confidence 44778888888887 99999999988999999999999988654 89999999999943 7999999
Q ss_pred EEeeeecCCCCCCCCCCCCchhhHhhc-CC------------CCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhh
Q 017070 176 RRAVYYDPESGKEDPSKSGICSNFLCN-SK------------PGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPF 242 (378)
Q Consensus 176 r~~~~~~~~~~~~~~~~~G~~S~~L~~-l~------------~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~ 242 (378)
|.. |.+|+.|.+ +. ..-++.|+||||....+- ...+.+++|++|+|+||+
T Consensus 419 k~~---------------g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~--~~~e~~vLV~~GiGvtPf 481 (646)
T KOG0039|consen 419 KAL---------------GDWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDV--FKYEVLVLVGGGIGVTPF 481 (646)
T ss_pred Eec---------------CcHHHHHHHHHhhhcccccccccccCceEEEECCCCCCchhh--hhcceEEEEccCcccCcc
Confidence 976 889998876 33 144799999999877433 346788999999999999
Q ss_pred HHHHHHHHhccCCCc-----------ccCCeEEEEEeecCCCC-cccHHHHHHHHhhCCC-ceEEEEEeecc----cccc
Q 017070 243 RGYLRRMFMESVPTY-----------KFGGLAWLFLGVANPDS-LLYDDEFTKYLQDYPD-NFRYDKALSRE----QKNK 305 (378)
Q Consensus 243 ~sil~~~~~~~~~~~-----------~~~~~v~L~~g~r~~~~-~~~~del~~l~~~~~~-~~~~~~~~Sr~----~~~~ 305 (378)
.|++++++....... ...+++.++|.+|...+ .++.+.+.++...+.. -..++..++.. +..+
T Consensus 482 ~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~ 561 (646)
T KOG0039|consen 482 ASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARS 561 (646)
T ss_pred HHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhh
Confidence 999999987643321 12467899999888776 4566666666543210 13334433321 0000
Q ss_pred ------------CCCccchh------HHHHhhHHHHHhccC---CC--eEEEEeCCCCcHHHHHHHHHHHH
Q 017070 306 ------------KGGKMYVQ------DKIEEYSDEIFKRLD---GG--AHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 306 ------------~~~~~~v~------~~i~~~~~~l~~~~~---~~--~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
...+..++ ..-+...++++.... +. .-|+.|||+.|++.+++.+.+..
T Consensus 562 ~~~~~~~~~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~ 632 (646)
T KOG0039|consen 562 ALIQMVQKLLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFS 632 (646)
T ss_pred HHHHHHHhhcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcc
Confidence 00000010 000222333332221 22 58999999999999999888754
No 84
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.75 E-value=5.9e-18 Score=135.04 Aligned_cols=96 Identities=26% Similarity=0.330 Sum_probs=81.8
Q ss_pred EEEEeEEEEecCCCCCCceEEEEeeCCCC---ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 97 TATIVSVERVVGAKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 97 ~a~V~~~~~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
+++|+++++++++ ++.|+|+.+.+ +.|.||||+.|.++..+ ....|+|||+|.+.+ .+.++|
T Consensus 1 ~~~v~~~~~~s~~-----~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~------~~~~R~yS~~s~~~~----~~~~~~ 65 (99)
T PF00970_consen 1 KAKVVEIEELSPD-----VKIFRFKLPDPDQKLDFKPGQFVSVRVPING------KQVSRPYSPASSPDD----KGYLEF 65 (99)
T ss_dssp EEEEEEEEEESSS-----EEEEEEEESSTTTT-SSTTT-EEEEEEEETT------EEEEEEEEBCSSTTS----SSEEEE
T ss_pred CEEEEEEEEeCCC-----eEEEEEEECCCCcccccCcceEEEEEEccCC------cceecceeEeeecCC----CCcEEE
Confidence 4899999999998 99999988743 67999999999988322 136899999999965 379999
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCC
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIML 220 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~ 220 (378)
+||.. ++|.+|+||+++++||+|.|+||+|+|.+
T Consensus 66 ~ik~~-------------~~G~~S~~L~~l~~Gd~v~i~gP~G~f~y 99 (99)
T PF00970_consen 66 AIKRY-------------PNGRVSRYLHQLKPGDEVEIRGPYGNFTY 99 (99)
T ss_dssp EEEEC-------------TTSHHHHHHHTSCTTSEEEEEEEESSEEE
T ss_pred EEEec-------------cCCHHHHHHHhCCCCCEEEEEEcccccCC
Confidence 99998 89999999999999999999999999853
No 85
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.64 E-value=6.4e-15 Score=156.37 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=102.0
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCCCCCCCCCCCC--CceecccccCCCCCCCCCCE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPGENPKKPGNPH--NVRLYSIASTRYGDSFDGKT 170 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~~~~~g~~~--~~R~ySias~p~~~~~~~~~ 170 (378)
..++++|++++.++++ ++.++|+.|.. -.++||||++|..++. +.+. .+||+||++.+.+ .+.
T Consensus 789 ~~l~~~Vv~~~~lap~-----i~~L~l~aP~iA~~~kPGQFVmL~~~~~-----g~~~l~~p~P~SI~~vD~e----~g~ 854 (1028)
T PRK06567 789 YLLTSRVNKINILDDK-----TFELIIHSPLAAKNFKFGQFFRLQNYSE-----DAAKLIEPVALSPIDIDVE----KGL 854 (1028)
T ss_pred hhhceEEEEEEEecCC-----EEEEEEeCcchhhcCCCCceEEEEeCCC-----CCccccCceeEEeeccCCC----CCE
Confidence 4578999999999998 99999998764 3689999999997541 1112 4568999998654 378
Q ss_pred EEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHH
Q 017070 171 ASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMF 250 (378)
Q Consensus 171 l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~ 250 (378)
++|+++.+ |..|..|+++++||.|.|.||+|..|..+. .+++|+||||+|+|| +++++.
T Consensus 855 It~i~rvV---------------GkgT~~Ls~l~~Gd~v~v~GPLG~pF~i~~---~k~vLLVgGGVGiAp---Lak~Lk 913 (1028)
T PRK06567 855 ISFIVFEV---------------GKSTSLCKTLSENEKVVLMGPTGSPLEIPQ---NKKIVIVDFEVGNIG---LLKVLK 913 (1028)
T ss_pred EEEEEEEE---------------ChHHHHHhcCCCCCEEEEEcccCCCCCCCC---CCeEEEEEccccHHH---HHHHHH
Confidence 99999998 999999999999999999999999887652 468999999999997 456555
Q ss_pred hcc
Q 017070 251 MES 253 (378)
Q Consensus 251 ~~~ 253 (378)
..+
T Consensus 914 ~~G 916 (1028)
T PRK06567 914 ENN 916 (1028)
T ss_pred HCC
Confidence 443
No 86
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.40 E-value=8.8e-13 Score=113.74 Aligned_cols=121 Identities=20% Similarity=0.314 Sum_probs=71.6
Q ss_pred CcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCc-ccHHHHHHHHhhCC-CceEEEEEeecccccc
Q 017070 228 ATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSL-LYDDEFTKYLQDYP-DNFRYDKALSREQKNK 305 (378)
Q Consensus 228 ~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~-~~~del~~l~~~~~-~~~~~~~~~Sr~~~~~ 305 (378)
.++||||||+||||+++++++++..........++|+|+|.+|+.+++ +|.++|.++..... .++++..+++++....
T Consensus 2 ~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~~ 81 (156)
T PF08030_consen 2 DNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSAP 81 (156)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT-----
T ss_pred CEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcccc
Confidence 579999999999999999999876643111224789999999999875 66655655544332 2789999988765321
Q ss_pred CC----------------Cc----------cchhHHHHhhHHHHHhc-----cCCCeEEEEeCCCCcHHHHHHHH
Q 017070 306 KG----------------GK----------MYVQDKIEEYSDEIFKR-----LDGGAHIYFCGLKGMMPGIQETL 349 (378)
Q Consensus 306 ~~----------------~~----------~~v~~~i~~~~~~l~~~-----~~~~~~vyvCGp~~m~~~v~~~L 349 (378)
.. .. ..+..- +..+++++.. ......|++|||++|+++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~g-RP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v 155 (156)
T PF08030_consen 82 SNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYG-RPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNAV 155 (156)
T ss_dssp --------------------------------EEES----HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccCCcccCCCcccceecC-CCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHHh
Confidence 00 00 000000 1122222221 13567899999999999998765
No 87
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.18 E-value=1.9e-12 Score=104.40 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=6.3
Q ss_pred EEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 98 ATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 98 a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
.++.+++.+..+ +++|++..+.. +.|+||||+.|.+|.... ..+++|||||+|.|.+ +.+.|+||
T Consensus 4 ~~~~~v~~~~~~-----~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~----~~~q~HPFTIas~~~~-----~~i~l~ik 69 (105)
T PF08022_consen 4 VRIASVELLPDD-----VVEITIPKPSSPFKWKPGQYVFLSFPSISK----WFWQWHPFTIASSPED-----NSITLIIK 69 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEcCCC-----EEEEEEECCCCCCCCCCceEEEEEEcCcCc----CcccccccEeeccCCC-----CEEEEEEE
Confidence 456677777776 99999999876 899999999999987541 0148999999999874 78999999
Q ss_pred EeeeecCCCCCCCCCCCCchhhHhhc-CC-------CCCEEEEEeeCCC
Q 017070 177 RAVYYDPESGKEDPSKSGICSNFLCN-SK-------PGDKVLITGPSGK 217 (378)
Q Consensus 177 ~~~~~~~~~~~~~~~~~G~~S~~L~~-l~-------~Gd~v~v~GP~G~ 217 (378)
.. |.+|+.|.+ +. .+-+|.|+||||.
T Consensus 70 ~~---------------g~~T~~L~~~~~~~~~~~~~~~~v~idGPYG~ 103 (105)
T PF08022_consen 70 AR---------------GGWTKRLYEHLSESPSKQGNRLRVFIDGPYGA 103 (105)
T ss_dssp ------------------------------------------TTSTTSH
T ss_pred eC---------------CCchHHHHHHHhhhcccCCCceEEEEECCCCC
Confidence 75 778998877 32 3347889999995
No 88
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=99.16 E-value=8.4e-09 Score=95.14 Aligned_cols=217 Identities=18% Similarity=0.261 Sum_probs=147.4
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccc---cCC-cEEEEeCCCCCCCCC--------------CCCCCceec
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPY---WEG-QSYGVIPPGENPKKP--------------GNPHNVRLY 155 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~---~pG-Q~v~l~~~~~~~~~~--------------g~~~~~R~y 155 (378)
..+.++|+.+++++++ ..+|+|.-++...| .+| |++.|.+|..+.... ......|.|
T Consensus 16 ~~~~~~V~~~~~lsP~-----m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~Y 90 (265)
T COG2375 16 RLHEATVTRVTQLSPH-----MVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTY 90 (265)
T ss_pred cceEEEEEEEEecCCC-----eEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccc
Confidence 5689999999999998 99999998875444 444 599999886432110 011358999
Q ss_pred ccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEec
Q 017070 156 SIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIAT 235 (378)
Q Consensus 156 Sias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAg 235 (378)
||.+...+. +++.+-+-.. ...|..|.|-.++++||+|.|.||.|.++..+ ....++||+-
T Consensus 91 TiR~~d~~~----~e~~vDfVlH------------~~~gpas~WA~~a~~GD~l~i~GP~g~~~p~~---~~~~~lLigD 151 (265)
T COG2375 91 TIRAVDAAA----GELDVDFVLH------------GEGGPASRWARTAQPGDTLTIMGPRGSLVPPE---AADWYLLIGD 151 (265)
T ss_pred eeeeecccc----cEEEEEEEEc------------CCCCcchhhHhhCCCCCEEEEeCCCCCCCCCC---CcceEEEecc
Confidence 998765432 4554444332 16799999999999999999999999977666 4578999999
Q ss_pred CCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHH
Q 017070 236 GTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDK 315 (378)
Q Consensus 236 GtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~ 315 (378)
=|++-.|.+||+++-... +...|.-+.+.++. +++. +++.+++.....+... -...
T Consensus 152 etAlPAIa~iLE~lp~~~--------~~~a~lev~d~ad~---~~l~-----~~~~l~~~Wl~r~~~~--------~~~l 207 (265)
T COG2375 152 ETALPAIARILETLPADT--------PAEAFLEVDDAADR---DELP-----SPDDLELEWLARDDAP--------TEQL 207 (265)
T ss_pred ccchHHHHHHHHhCCCCC--------ceEEEEEeCChHHh---hccC-----CCCceeEEEecCCCcc--------chHH
Confidence 999999999999875442 34667777766554 1221 2236666665443321 1112
Q ss_pred HHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHH
Q 017070 316 IEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQ 362 (378)
Q Consensus 316 i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~ 362 (378)
+...+.+. ........|++.|-..+++++++.|++ +.|++...
T Consensus 208 l~~a~~~~-~~P~~~~~vwiagE~~~v~~~Rk~L~~---e~g~dk~~ 250 (265)
T COG2375 208 LAAALAQA-ALPAGDYYVWIAGEASAVKAIRKFLRN---ERGFDKSR 250 (265)
T ss_pred HHHHHhcc-cCCCCceEEEEeccHHHHHHHHHHHhh---hcCCCHHH
Confidence 22222111 111234799999999999999999975 34555543
No 89
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=98.59 E-value=2e-07 Score=76.60 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=60.5
Q ss_pred EEeEEEEecCCCCCCceEEEEeeCCCCcc---ccCCcEEEEeCCCCCCCCC---------------CCCCCceecccccC
Q 017070 99 TIVSVERVVGAKAPGETCHIVIDHGGNVP---YWEGQSYGVIPPGENPKKP---------------GNPHNVRLYSIAST 160 (378)
Q Consensus 99 ~V~~~~~lt~~~~~~~v~~l~l~~~~~~~---~~pGQ~v~l~~~~~~~~~~---------------g~~~~~R~ySias~ 160 (378)
+|++++.++++ +.+|+|..++-.. ..+|||+.|.+|....... ......|.||+.+.
T Consensus 1 ~V~~~~~ltP~-----~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~ 75 (117)
T PF08021_consen 1 TVVRVERLTPH-----MRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRF 75 (117)
T ss_dssp EEEEEEEEETT-----EEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EE
T ss_pred CEEEEEECCCC-----EEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeE
Confidence 68999999998 9999999876332 4699999999886442110 01136899999887
Q ss_pred CCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCC
Q 017070 161 RYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKI 218 (378)
Q Consensus 161 p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~ 218 (378)
..+ .+++.|-+-.. ...|..+.|...+++||+|.|.||.|.|
T Consensus 76 d~~----~~~l~iDfv~H------------g~~Gpas~WA~~A~pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 76 DPE----TGELDIDFVLH------------GDEGPASRWARSARPGDRVGVTGPRGSF 117 (117)
T ss_dssp ETT------EEEEEEE--------------SS--HHHHHHHH--TT-EEEEEEEE---
T ss_pred cCC----CCEEEEEEEEC------------CCCCchHHHHhhCCCCCEEEEeCCCCCC
Confidence 543 26777766554 1338999999999999999999999976
No 90
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=98.16 E-value=7.3e-06 Score=74.89 Aligned_cols=50 Identities=30% Similarity=0.560 Sum_probs=37.4
Q ss_pred CCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCC
Q 017070 91 KPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPG 140 (378)
Q Consensus 91 ~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~ 140 (378)
....++.++|+++++|++.++..++++|.|+.++ .+.|+||.++.|.+++
T Consensus 4 ~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N 54 (219)
T PF00667_consen 4 SRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPN 54 (219)
T ss_dssp BTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SS
T ss_pred CCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccC
Confidence 4567899999999999999899999999999865 7999999999998864
No 91
>CHL00134 petF ferredoxin; Validated
Probab=87.45 E-value=0.36 Score=38.18 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=23.9
Q ss_pred cccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 44 SLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 44 ~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
.|++++++. |++|+| |+.|.+|+.|+
T Consensus 66 ~l~~~e~~~---g~~L~C---~~~~~~d~~i~ 91 (99)
T CHL00134 66 FLDDDQLEA---GFVLTC---VAYPTSDCTIL 91 (99)
T ss_pred CCCHHHHhC---CeEEEe---eCEECCCeEEE
Confidence 388888888 999999 99999999997
No 92
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=87.35 E-value=2.8 Score=34.12 Aligned_cols=100 Identities=9% Similarity=0.168 Sum_probs=60.2
Q ss_pred CcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCC
Q 017070 228 ATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKG 307 (378)
Q Consensus 228 ~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~ 307 (378)
+.+||+|--|++..+.+|++.+-. ..+++++.-+.+.++... |.. +.+++++.+...... .
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~lp~--------~~~~~v~iev~~~~d~~~---l~~-----~~~~~v~wv~r~~~~---~ 62 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEALPA--------DAPGTVFIEVPDEADRQP---LPA-----PAGVEVTWVPRDGPA---A 62 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS-T--------T-EEEEEEEESSGGG---------------TEEEEEEEE-SS-----T
T ss_pred ceEEEEeccccHHHHHHHHHhCCC--------CCeEEEEEEECChHhccc---CCC-----CCCCEEEEEeCCCCC---c
Confidence 468999999999999999998832 246777777777666432 222 237777776544430 1
Q ss_pred CccchhHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHH
Q 017070 308 GKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKR 351 (378)
Q Consensus 308 ~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~ 351 (378)
....+.+.+.... .......++++|-..+++++++.|++
T Consensus 63 ~~~~l~~al~~~~-----~~~~~~~vW~AgE~~~~r~lR~~l~~ 101 (119)
T PF04954_consen 63 QGSALADALRDLP-----LPAGDGYVWVAGEASAVRALRRHLRE 101 (119)
T ss_dssp T-HHHHHHHTTS--------SS-EEEEEEEEHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhh-----ccCCCeEEEEEecHHHHHHHHHHHHH
Confidence 1112223322211 11367899999999999999999984
No 93
>PLN03136 Ferredoxin; Provisional
Probab=86.16 E-value=0.47 Score=40.45 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=23.1
Q ss_pred cccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 44 SLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 44 ~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
.|++++++. |++|+| |+.|.+|++|+
T Consensus 115 ~L~~~e~~~---G~~LaC---~a~p~sD~~Ie 140 (148)
T PLN03136 115 FLDDEQISE---GYVLTC---VAYPTSDVVIE 140 (148)
T ss_pred CCCHHHhcC---CEEEEe---EeEECCCcEEe
Confidence 477777777 999999 99999999997
No 94
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=84.67 E-value=0.59 Score=36.74 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=23.2
Q ss_pred ccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 45 LDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 45 l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
|++++++. |++|+| |+.+.+|++|+
T Consensus 65 l~~~~~~~---g~~LaC---~~~~~~di~v~ 89 (97)
T TIGR02008 65 LDDDQMEA---GYVLTC---VAYPTSDCTIE 89 (97)
T ss_pred CCHHHHhC---CeEEEe---eCEECCCeEEE
Confidence 78888888 999999 99999999998
No 95
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=83.51 E-value=1.8 Score=42.54 Aligned_cols=43 Identities=30% Similarity=0.531 Sum_probs=36.6
Q ss_pred EEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCC
Q 017070 99 TIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGE 141 (378)
Q Consensus 99 ~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~ 141 (378)
+|+.+++||+..+..+++++.|+.++ .+.|+||.++.|.+++.
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~ 44 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTND 44 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCC
Confidence 36678889988788889999999865 68999999999988764
No 96
>PTZ00038 ferredoxin; Provisional
Probab=79.75 E-value=1.1 Score=39.89 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=24.3
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
..|++++++. |++|+| |+.|.+|++|+
T Consensus 155 ~~Ls~ee~~~---G~~LaC---qa~p~sDi~Ie 181 (191)
T PTZ00038 155 SYLDDEQLKK---GYCLLC---TCYPKSDCTIE 181 (191)
T ss_pred ccCCHHHhcC---CEEEEe---eCEECCCeEEe
Confidence 3588888888 999999 99999999997
No 97
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=78.17 E-value=1.5 Score=33.47 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=18.2
Q ss_pred ccCCcCCccEEEEeeeeeecccceeec
Q 017070 49 SRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 49 ~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
++++ |++|+| |+.|.+|++|+
T Consensus 63 ~~~~---g~~L~C---~~~p~sd~~ie 83 (84)
T PRK10713 63 FIQP---GEILPC---CCRAKGDIEIE 83 (84)
T ss_pred hhhC---CEEEEe---eCEECCCEEEe
Confidence 4555 899999 99999999986
No 98
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=77.85 E-value=3.4 Score=41.33 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=36.5
Q ss_pred EEeEEEEecCCCCCCceEEEEeeCCC--CccccCCcEEEEeCCCC
Q 017070 99 TIVSVERVVGAKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGE 141 (378)
Q Consensus 99 ~V~~~~~lt~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~~~~ 141 (378)
+|.+++.|+...+..++++|.|+..+ .+.|+||.++.|.+++.
T Consensus 1 ~~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~ 45 (406)
T cd06202 1 KVISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANR 45 (406)
T ss_pred CcceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCC
Confidence 46778888887778899999999864 68999999999988774
No 99
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=77.01 E-value=17 Score=34.35 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=54.8
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeC---CCCc---cccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCC
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDH---GGNV---PYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFD 167 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~---~~~~---~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~ 167 (378)
...+++|+.++++...+ .+|.=+... ++++ .+.-|.|+.=.-...+ ..-..|||-+..
T Consensus 198 eL~~a~vt~ieplG~gD---RVCVDTcsLm~~gEGMLVGs~s~gmFlVhsEs~es-----pYVAaRPFRVNA-------- 261 (376)
T COG1465 198 ELVTATVTEIEPLGSGD---RVCVDTCSLMTRGEGMLVGSQSRGMFLVHSESEES-----PYVAARPFRVNA-------- 261 (376)
T ss_pred EEEEEEEEEEeecCCCc---eEEEeeecccccCCceEeecccCcEEEEecccccC-----cccccCceeecc--------
Confidence 44678999999887652 355444333 2222 2333433322111111 113567776543
Q ss_pred CCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCC
Q 017070 168 GKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGK 217 (378)
Q Consensus 168 ~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~ 217 (378)
+.+.-+|+. |+|. |+||+.|+.||+|.|----|.
T Consensus 262 -G~VhaYi~v--------------Pg~k-TkYLaEL~aGDeV~iVD~dGr 295 (376)
T COG1465 262 -GAVHAYIRV--------------PGGK-TKYLAELKAGDEVLIVDFDGR 295 (376)
T ss_pred -cceeEEEEc--------------CCCc-eEEhhhhcCCCeEEEEecCCc
Confidence 567788875 5554 999999999999998766654
No 100
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=73.79 E-value=14 Score=28.25 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=50.0
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCC-Cc-cccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGG-NV-PYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~-~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
..++|.+++.... -++++++.+. .+ .+..|+++.+ +| -..|+.+... +.++|
T Consensus 6 ~~g~I~~i~~~~~------~~~~~i~~~~~~~~~~~~g~SIav--nG------------vcLTV~~~~~------~~f~~ 59 (85)
T PF00677_consen 6 GTGKIISIEKNGD------SQRLRIEIPDKILSDLKIGGSIAV--NG------------VCLTVTDINE------DWFEV 59 (85)
T ss_dssp EEEEEEEEEEESS------EEEEEEEESTGGGGTG-TTSEEEE--TT------------EEEEEEEEET------TEEEE
T ss_pred EEEEEEEEEECCC------CEEEEEEcCHHHHhhCccCcEEEE--CC------------eeeEEEEecC------CEEEE
Confidence 5689999998754 7788888873 44 6899998888 22 3466766543 67777
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEE
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLIT 212 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~ 212 (378)
.+-.. =.-...|..+++|++|.++
T Consensus 60 ~l~~e---------------Tl~~T~l~~~~~G~~VNlE 83 (85)
T PF00677_consen 60 DLIPE---------------TLRRTTLGNLKVGDRVNLE 83 (85)
T ss_dssp EEEHH---------------HHHCSSGGG--TTSEEEEE
T ss_pred echHH---------------HhhhchhccCCCCCEEEEe
Confidence 76532 1123446779999999886
No 101
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=62.14 E-value=4.1 Score=39.45 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=24.1
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
..|+++++++ |++|+| |+.|.+|++|.
T Consensus 306 ~~l~~~~~~~---g~~l~C---~~~~~~d~~i~ 332 (332)
T PRK10684 306 MTLTPAEIAQ---GYVLAC---SCHPQGDLVLA 332 (332)
T ss_pred ccCCHHHHhC---CcEEEe---eCEECCCeEEC
Confidence 5689999999 999999 99999999873
No 102
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=58.81 E-value=5.6 Score=29.66 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=19.4
Q ss_pred ccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 45 LDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 45 l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
++.++... |++|+| |+.+.+|++|+
T Consensus 60 ~~~~~~~~---~~~LaC---~~~~~~~i~v~ 84 (84)
T cd00207 60 LDEEEAEG---GYVLAC---QTRVTDGLVIE 84 (84)
T ss_pred CCHHHHhC---CeEEEE---eCeeCCCcEEC
Confidence 44455555 899999 99999998874
No 103
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=52.83 E-value=38 Score=31.09 Aligned_cols=55 Identities=13% Similarity=0.311 Sum_probs=36.7
Q ss_pred EEEecCC-cchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEE
Q 017070 231 IMIATGT-GIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKA 297 (378)
Q Consensus 231 v~IAgGt-GiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~ 297 (378)
+||.||- ||. +++++++++.. +.-+++..+|+++.. ..|++.+...++ ++++...
T Consensus 6 v~ItGaNRGIG--lgLVk~llk~~-------~i~~iiat~r~~e~a--~~~l~~k~~~d~-rvHii~L 61 (249)
T KOG1611|consen 6 VFITGANRGIG--LGLVKELLKDK-------GIEVIIATARDPEKA--ATELALKSKSDS-RVHIIQL 61 (249)
T ss_pred EEEeccCcchh--HHHHHHHhcCC-------CcEEEEEecCChHHh--hHHHHHhhccCC-ceEEEEE
Confidence 6777653 554 46777776543 345778888877654 677777777777 8877654
No 104
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=50.55 E-value=34 Score=34.24 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=31.4
Q ss_pred CCCCeEEEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCC
Q 017070 92 PKEPYTATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPG 140 (378)
Q Consensus 92 ~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~ 140 (378)
+.+.+.++|..+....+. ...++.+++..+.+ ..++||+|+.+.+..
T Consensus 274 ~~~~~~g~v~~i~p~vd~--~trt~~vrv~l~N~~~~L~pGm~v~v~i~~ 321 (409)
T PRK09783 274 PDKTFTIRKWTLLPSVDA--ATRTLQLRLEVDNADEALKPGMNAWLQLNT 321 (409)
T ss_pred CCCEEEEEEEEEccccCC--CCcEEEEEEEEeCCCCccCCCCEEEEEEec
Confidence 345678888776654332 12466777776553 468999999998864
No 105
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=50.46 E-value=8.7 Score=37.39 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.8
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccc-eeec
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSK-VAVS 75 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd-~~i~ 75 (378)
.+|++++++. |++|+| |+.|.+| ++|+
T Consensus 323 ~~l~~~~~~~---g~~l~C---~~~~~~~~~~~~ 350 (352)
T TIGR02160 323 YALEPDEVDA---GYVLTC---QAYPLSDKLVVD 350 (352)
T ss_pred cCCCHHHHhC---CcEEEe---eEEECCCcEEEe
Confidence 4688888888 999999 9999997 6664
No 106
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=39.42 E-value=37 Score=33.14 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=40.5
Q ss_pred CCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCC---CCC
Q 017070 150 HNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPE---DNP 226 (378)
Q Consensus 150 ~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~---~~~ 226 (378)
..+|||-+.- +-++=+|.. |+|. |+||.+|+.|++|.+....|.-....- .-.
T Consensus 230 va~RPFRVNA---------GaVHaYv~~--------------pg~k-T~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE 285 (354)
T PF01959_consen 230 VASRPFRVNA---------GAVHAYVLM--------------PGGK-TRYLSELRSGDEVLVVDADGRTRTAIVGRVKIE 285 (354)
T ss_pred CCCCCceEec---------CcceeEEEc--------------CCCc-eeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEe
Confidence 4678887755 445566654 5554 999999999999999988886422110 002
Q ss_pred CCcEEEEe
Q 017070 227 NATHIMIA 234 (378)
Q Consensus 227 ~~~vv~IA 234 (378)
.+|+++|=
T Consensus 286 ~RPLllIe 293 (354)
T PF01959_consen 286 RRPLLLIE 293 (354)
T ss_pred ecceEEEE
Confidence 36777763
No 107
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=37.79 E-value=36 Score=33.21 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=21.7
Q ss_pred CcEEEEecCCc--chhhHHHHHHHHhc
Q 017070 228 ATHIMIATGTG--IAPFRGYLRRMFME 252 (378)
Q Consensus 228 ~~vv~IAgGtG--iaP~~sil~~~~~~ 252 (378)
+++++.||||| |-|.+++.+++.+.
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 46899999998 89999999998764
No 108
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=37.59 E-value=38 Score=32.93 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=40.9
Q ss_pred CCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCC---CCC
Q 017070 150 HNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPE---DNP 226 (378)
Q Consensus 150 ~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~---~~~ 226 (378)
..+|||-+.- +-++-+|+. |+| -|.||.+|+.|++|.+-.-.|......- .-.
T Consensus 220 va~RPFRVNA---------GaVhaYv~~--------------pgg-~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE 275 (344)
T PRK02290 220 VASRPFRVNA---------GAVHAYVRV--------------PGD-KTRYLSELRSGDEVLVVDADGNTREAIVGRVKIE 275 (344)
T ss_pred ccCCCeeEec---------CcceeEEEc--------------CCC-cchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEe
Confidence 4678887755 445666664 455 4999999999999999988886432110 002
Q ss_pred CCcEEEEec
Q 017070 227 NATHIMIAT 235 (378)
Q Consensus 227 ~~~vv~IAg 235 (378)
.+|+++|-+
T Consensus 276 ~RPL~lIeA 284 (344)
T PRK02290 276 KRPLLLIEA 284 (344)
T ss_pred eccEEEEEE
Confidence 367777743
No 109
>PLN02292 ferric-chelate reductase
Probab=36.45 E-value=29 Score=37.29 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=20.8
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHH
Q 017070 329 GGAHIYFCGLKGMMPGIQETLKRV 352 (378)
Q Consensus 329 ~~~~vyvCGp~~m~~~v~~~L~~~ 352 (378)
.+.-|++|||+.|-+.|.+.+++-
T Consensus 665 ~~vgvlv~gp~~~~~~va~~c~s~ 688 (702)
T PLN02292 665 SSVGVLVCGPKKMRQKVAKICSSG 688 (702)
T ss_pred CceeEEEECcHHHHHHHHHHHhcC
Confidence 667899999999999999888753
No 110
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=34.54 E-value=97 Score=25.62 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=33.5
Q ss_pred EEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeC
Q 017070 98 ATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIP 138 (378)
Q Consensus 98 a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~ 138 (378)
--+++++-..+..|.++++.+.|+.++..++..-|-+++..
T Consensus 45 qWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~ 85 (161)
T KOG0427|consen 45 QWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP 85 (161)
T ss_pred eeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence 34566666777788889999999999999999999888754
No 111
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=32.49 E-value=58 Score=35.22 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=21.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHH
Q 017070 329 GGAHIYFCGLKGMMPGIQETLKRV 352 (378)
Q Consensus 329 ~~~~vyvCGp~~m~~~v~~~L~~~ 352 (378)
.+.-|++|||++|-++|.+.++..
T Consensus 674 ~~vgvlv~gp~~~~~~va~~~~~~ 697 (722)
T PLN02844 674 SDIGVLVCGPETMKESVASMCRLK 697 (722)
T ss_pred CceeEEEeCchHHHHHHHHHHHhc
Confidence 567899999999999999998765
No 112
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=31.94 E-value=1.2e+02 Score=27.81 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=31.1
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCC
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPG 140 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~ 140 (378)
..+.++|..+...... ....+.+++..+.+ ..+.+|+++.+.+..
T Consensus 153 ~~~~g~v~~I~~~~~~--~~~~~~v~~~~~~~~~~l~~G~~v~v~i~~ 198 (265)
T TIGR00999 153 RPLPARVDYVGPEVDG--SSRTAKVRVLIKNENLTLKPGLFVQVRVET 198 (265)
T ss_pred CEEEEEEEEEccccCC--CCceEEEEEEEeCCCCccCCCCEEEEEEec
Confidence 3588999988865432 12356666665543 358999999998865
No 113
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=31.47 E-value=32 Score=27.17 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=16.6
Q ss_pred CccEEEEeeeeeecccceeecc
Q 017070 55 RNRYVVCMSVQQASKSKVAVSP 76 (378)
Q Consensus 55 ~g~~l~C~~~~~~~~sd~~i~~ 76 (378)
++.+|+| |+.+.+|+.+..
T Consensus 77 ~~~rL~C---q~~~~~d~~i~~ 95 (102)
T COG0633 77 GNSRLSC---QCRVKGDLDIEV 95 (102)
T ss_pred CCcEEee---eeEECCCcceEE
Confidence 3689999 999999999864
No 114
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.40 E-value=1.3e+02 Score=29.32 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=31.4
Q ss_pred CCCeEEEEeC-CCCcHH-HHHHHHHHHHHHcCCC--------HHHHHHHHHHcC
Q 017070 328 DGGAHIYFCG-LKGMMP-GIQETLKRVAEQRGES--------WDQKLSQLKKNK 371 (378)
Q Consensus 328 ~~~~~vyvCG-p~~m~~-~v~~~L~~~g~~~g~~--------~~~~~~~l~~~~ 371 (378)
...+.|-.|| .|+|+. -|+++|.+++.+.|.+ .+.|-+-|++.|
T Consensus 153 gg~TaVs~cGANPGmvswFVKqaLvdlAad~~ld~~ep~~ddr~gwAkLmkK~G 206 (481)
T COG5310 153 GGPTAVSTCGANPGMVSWFVKQALVDLAADLGLDFEEPAQDDREGWAKLMKKAG 206 (481)
T ss_pred CCCeeeeecCCCchHHHHHHHHHHHHHHHHhCcCccCCcchhhHHHHHHHHHcC
Confidence 3557899999 789998 6788899998887633 334555555554
No 115
>PF08877 MepB: MepB protein; InterPro: IPR011235 This is a family of uncharacterised bacterial proteins.
Probab=30.79 E-value=1.2e+02 Score=24.93 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=29.6
Q ss_pred eEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEE
Q 017070 115 TCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVR 176 (378)
Q Consensus 115 v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir 176 (378)
.+++|+.. .-+=++||||.++--+.+ ...+||+....+ +.+-+.|.
T Consensus 18 ~~~~R~AK--~TP~K~G~FVt~Wkr~~~-------g~~~Pf~~~d~~-------d~liI~v~ 63 (123)
T PF08877_consen 18 TIRFRLAK--KTPKKPGQFVTFWKRDEN-------GKNQPFDEEDSF-------DFLIINVI 63 (123)
T ss_pred EEEEEecc--cCCCcccEEEEEEEECCC-------CCccCCccccCC-------CEEEEEEE
Confidence 55555543 345689999999765432 367899876654 45656554
No 116
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=27.81 E-value=1.8e+02 Score=28.59 Aligned_cols=43 Identities=9% Similarity=-0.031 Sum_probs=28.6
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCC
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPG 140 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~ 140 (378)
+.++|..+....+.. ..++.+++..+.+ ..++||+|+.+.++.
T Consensus 252 ~~g~v~~i~~~~d~~--t~t~~v~~~~~n~~~~l~pGm~v~v~i~~ 295 (385)
T PRK09859 252 QTGTLKFSDPTVDET--TGSVTLRAIFPNPNGDLLPGMYVTALVDE 295 (385)
T ss_pred cceEEEEecCccCCC--CCeEEEEEEEECCCCeECCCCEEEEEEec
Confidence 478888877654431 1356666665543 469999999998864
No 117
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=25.65 E-value=49 Score=26.43 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=15.5
Q ss_pred CccEEEEeeeeeecc-cceeec
Q 017070 55 RNRYVVCMSVQQASK-SKVAVS 75 (378)
Q Consensus 55 ~g~~l~C~~~~~~~~-sd~~i~ 75 (378)
.|++|+| |+.+. +|++|+
T Consensus 80 ~~~RLaC---q~~~~~~dl~v~ 98 (110)
T TIGR02007 80 PDSRLSC---QAVVADEDLVVE 98 (110)
T ss_pred CCcEEee---eEEEcCCCEEEE
Confidence 3889999 99988 599997
No 118
>PLN02631 ferric-chelate reductase
Probab=25.21 E-value=58 Score=35.03 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=20.6
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHH
Q 017070 329 GGAHIYFCGLKGMMPGIQETLKRV 352 (378)
Q Consensus 329 ~~~~vyvCGp~~m~~~v~~~L~~~ 352 (378)
.+.-|++|||+.|-..|.+.+..-
T Consensus 662 ~~vgvlv~gp~~~~~~va~~c~s~ 685 (699)
T PLN02631 662 EDVGVMVCGPRKMRHEVAKICSSG 685 (699)
T ss_pred CceeEEEECcHHHHHHHHHHHhcC
Confidence 467899999999999999888753
No 119
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=25.06 E-value=2.1e+02 Score=28.15 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=28.0
Q ss_pred CeEEEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCC
Q 017070 95 PYTATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPG 140 (378)
Q Consensus 95 ~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~ 140 (378)
+++++|..+....+. ...++.+++..+.+ ..++||+|+.+.++.
T Consensus 254 ~~~g~v~~i~~~~d~--~t~t~~V~~~~~n~~~~L~pGm~~~v~i~~ 298 (385)
T PRK09578 254 PLKGKLLFSDLAVDP--TTDTVAMRALFPNPERELLPGAYVRIALDR 298 (385)
T ss_pred CcceEEEEeeccCCC--CCCeEEEEEEEeCCCCcCCCCCEEEEEEEc
Confidence 356777666543222 12366666666543 468999999998865
No 120
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=24.53 E-value=2.8e+02 Score=24.72 Aligned_cols=77 Identities=19% Similarity=0.136 Sum_probs=47.3
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCCc-c-ccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGNV-P-YWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~-~-~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
-.++|.++++... -++++++.|..+ + ..+|.+|.+. | -..|+..... +.+++
T Consensus 104 ~~g~I~~i~~~~~------~~~~~i~~~~~~~~~l~~kgSIavd--G------------vsLTV~~~~~------~~f~v 157 (194)
T PRK09289 104 GTGEIVSIEKEGN------SVEFRFKAPAELAKYIVEKGSIAVD--G------------VSLTVNEVDG------DRFSV 157 (194)
T ss_pred EEEEEEEEEECCC------cEEEEEECChHHhcccccCCEEEEc--c------------EEEEEEEEcC------CEEEE
Confidence 4566777766543 668888887653 3 6789988872 2 3466666532 55666
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEe
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITG 213 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~G 213 (378)
.+-.. =.-..-|..+++||.|.++-
T Consensus 158 ~lipe---------------Tl~~T~l~~~k~G~~VNlE~ 182 (194)
T PRK09289 158 NLIPH---------------TLENTTLGEKKVGDRVNLEI 182 (194)
T ss_pred EEeHH---------------HHhhCccccCCCCCEEEEeE
Confidence 65321 11122356699999998874
No 121
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=24.08 E-value=1.9e+02 Score=28.63 Aligned_cols=42 Identities=7% Similarity=-0.092 Sum_probs=26.4
Q ss_pred EEEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCC
Q 017070 97 TATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPG 140 (378)
Q Consensus 97 ~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~ 140 (378)
+++|..+....+. ...++.+++..+.+ ..++||+|+.+.+..
T Consensus 257 ~g~v~~i~~~~d~--~trt~~V~~~~~n~~~~L~pGm~~~v~i~~ 299 (397)
T PRK15030 257 DGTLEFSDVTVDQ--TTGSITLRAIFPNPDHTLLPGMFVRARLEE 299 (397)
T ss_pred ceEEEEeeccccC--CCCeEEEEEEEeCCCCcccCCCEEEEEEee
Confidence 5777766653322 12356666655543 458999999998764
No 122
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=23.64 E-value=2.6e+02 Score=25.15 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=51.8
Q ss_pred CeEEEEeEEEEecCCCCCCceEEEEeeCCCC-cc-ccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEE
Q 017070 95 PYTATIVSVERVVGAKAPGETCHIVIDHGGN-VP-YWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTAS 172 (378)
Q Consensus 95 ~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~-~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~ 172 (378)
.-.++|.+++.... .+.++|..|.. .+ ..++.+|.|. | =..|++.... +.++
T Consensus 104 d~~~~i~~i~~~~~------~~~~~i~~~~~~~~~i~~kgSIaid--G------------vsLTV~~v~~------~~f~ 157 (206)
T PRK13020 104 DTTATVVEISDTEE------NYDIRFRVPPEWMKYIFAKGFIGVN--G------------CSLTVGEVDE------SEFE 157 (206)
T ss_pred cEEEEEEEEEEcCC------CEEEEEEEChHHhcccccCCEEEEe--e------------EEEEEEeEcC------CEEE
Confidence 35677888887654 67778887764 34 5688888772 3 2466766532 5566
Q ss_pred EEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEe-eCCC
Q 017070 173 LCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITG-PSGK 217 (378)
Q Consensus 173 l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~G-P~G~ 217 (378)
+.+-.. =.-..-|..+++||.|.++- ..|+
T Consensus 158 v~lIp~---------------Tl~~T~l~~~k~G~~VNiE~D~~~k 188 (206)
T PRK13020 158 VHLIPE---------------TLRATNLGAKKVGDLVNIEIDSQTQ 188 (206)
T ss_pred EEEeHH---------------HHhhcccccCCCCCEEEEeEeccch
Confidence 666322 11223467799999999986 4444
No 123
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=23.43 E-value=2.2e+02 Score=28.39 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=29.1
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCC
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPG 140 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~ 140 (378)
..+.++|..+....+. ...++.+++..+.. -.++||||+.+.+..
T Consensus 270 ~~~~G~v~~I~~~id~--~t~t~~v~a~~~n~~~~L~pG~~v~v~i~~ 315 (415)
T PRK11556 270 KLSEGTLLSLDNQIDA--TTGTIKLKARFNNQDDALFPNQFVNARMLV 315 (415)
T ss_pred eeeeeEEEEeeccccC--CCCEEEEEEEeCCCCCccCCCCEEEEEEEe
Confidence 3578889888764432 11355666655543 458999999987654
No 124
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=21.82 E-value=2e+02 Score=22.29 Aligned_cols=72 Identities=14% Similarity=0.249 Sum_probs=39.1
Q ss_pred EEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEe
Q 017070 99 TIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRA 178 (378)
Q Consensus 99 ~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~ 178 (378)
.+.-+.++|.. +..+.+..++...| | .+.|.+.. + ..|+- -. .|. ....+++.++..
T Consensus 2 ~l~~LDKitg~-----~~~~~v~~G~~~~~--g-~L~i~~~~--C-------~~r~p-~~-~p~----~~Af~~v~~~~~ 58 (90)
T PF09923_consen 2 VLRGLDKITGR-----VTDFEVPVGETVQF--G-NLTITLRA--C-------VSRPP-TE-NPD----TDAFVQVTIREQ 58 (90)
T ss_pred eEEEEecccCe-----EEEEEEcCCCEEEE--c-cEEEEhhh--e-------ecCCC-CC-CcC----ccceEEEEEcCC
Confidence 45566777775 77777777665555 2 24444432 1 22221 11 222 225677777653
Q ss_pred eeecCCCCCCCCCCCC-chhhHhhcCCCC
Q 017070 179 VYYDPESGKEDPSKSG-ICSNFLCNSKPG 206 (378)
Q Consensus 179 ~~~~~~~~~~~~~~~G-~~S~~L~~l~~G 206 (378)
... .|+.|++.-.|+
T Consensus 59 -------------~~~~iF~GWMfassPa 74 (90)
T PF09923_consen 59 -------------GKREIFSGWMFASSPA 74 (90)
T ss_pred -------------CccccEeeeEEecCcc
Confidence 223 788888775554
No 125
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=21.27 E-value=3.8e+02 Score=24.08 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=50.3
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCCc--cccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGNV--PYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~--~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
-.++|.++++... -++++++.+..+ ...+|.+|.+. | =..|+..... +.+.+
T Consensus 8 ~vg~I~~i~~~~~------~~~l~i~~~~~~~~~l~~g~SIavn--G------------VcLTV~~v~~------~~f~~ 61 (206)
T PRK13020 8 ATAEVVAIHKKDG------LNTLEIAFPPELLEGLEIGASVAVN--G------------VCLTVTKIEG------DRVFF 61 (206)
T ss_pred EEEEEEEEEECCC------cEEEEEEeChhHhccCCCCCEEEEC--C------------EEEEEEEECC------CEEEE
Confidence 4578888888544 567788877543 46899988872 2 2456666532 55666
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeC
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPS 215 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~ 215 (378)
.+-.. =.-...|..+++|+.|.++-+.
T Consensus 62 ~lipe---------------Tl~~T~l~~~~~G~~VNlEral 88 (206)
T PRK13020 62 DVMEE---------------TLRLTNLADLRVGDRVNIERSA 88 (206)
T ss_pred EEhHH---------------HHhhCchhhccCCCEEeeEecc
Confidence 65321 1112346669999999999754
No 126
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=20.67 E-value=53 Score=28.66 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=13.3
Q ss_pred CcEEEEecCCcchhh
Q 017070 228 ATHIMIATGTGIAPF 242 (378)
Q Consensus 228 ~~vv~IAgGtGiaP~ 242 (378)
-.+|+.-||||+||=
T Consensus 68 ~DvvlttGGTG~t~R 82 (169)
T COG0521 68 VDVVLTTGGTGITPR 82 (169)
T ss_pred CCEEEEcCCccCCCC
Confidence 579999999999983
No 127
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.35 E-value=6.4e+02 Score=22.73 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=15.0
Q ss_pred CcEEEEecCC---cchhhHHHHHHHHhcc
Q 017070 228 ATHIMIATGT---GIAPFRGYLRRMFMES 253 (378)
Q Consensus 228 ~~vv~IAgGt---GiaP~~sil~~~~~~~ 253 (378)
.++++|.||+ ||. +++.+.+.+++
T Consensus 10 ~k~~lItGas~g~GIG--~a~a~~la~~G 36 (258)
T PRK07533 10 GKRGLVVGIANEQSIA--WGCARAFRALG 36 (258)
T ss_pred CCEEEEECCCCCCcHH--HHHHHHHHHcC
Confidence 4567777654 666 56666666554
Done!