Query 017070
Match_columns 378
No_of_seqs 292 out of 1686
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:26:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vo2_A Putative uncharacterize 100.0 3.8E-52 1.3E-56 398.4 34.1 293 79-378 17-310 (310)
2 3lo8_A Ferredoxin--NADP reduct 100.0 2.4E-51 8.4E-56 392.8 34.9 301 78-378 11-311 (311)
3 1fnb_A Ferredoxin-NADP+ reduct 100.0 3.3E-48 1.1E-52 371.6 34.4 298 74-378 16-314 (314)
4 2b5o_A FNR, ferredoxin--NADP r 100.0 4.8E-48 1.6E-52 382.4 34.1 290 83-378 110-402 (402)
5 2bmw_A Ferredoxin--NADP reduct 100.0 4.1E-47 1.4E-51 362.3 34.3 288 85-378 11-304 (304)
6 2rc5_A Ferredoxin-NADP reducta 100.0 2.2E-45 7.4E-50 352.0 30.7 295 59-378 1-314 (314)
7 3jqq_A Ferredoxin NADP reducta 100.0 2.2E-44 7.5E-49 345.4 28.3 278 84-378 4-316 (316)
8 1krh_A Benzoate 1,2-dioxygenas 100.0 9.7E-43 3.3E-47 336.9 19.6 256 40-353 65-324 (338)
9 1ddg_A Sulfite reductase (NADP 100.0 1.7E-40 5.7E-45 325.0 29.1 269 90-378 6-374 (374)
10 1tvc_A Methane monooxygenase c 100.0 7.1E-40 2.4E-44 303.6 22.7 220 92-353 7-233 (250)
11 1qfj_A Protein (flavin reducta 100.0 1.2E-39 4.2E-44 298.4 15.9 214 96-353 3-218 (232)
12 2eix_A NADH-cytochrome B5 redu 100.0 3.7E-38 1.2E-42 290.6 24.3 224 91-353 7-234 (243)
13 1fdr_A Flavodoxin reductase; f 100.0 2E-38 6.7E-43 293.3 21.7 239 95-378 4-247 (248)
14 2r6h_A NADH:ubiquinone oxidore 100.0 3.4E-38 1.2E-42 298.3 23.2 242 92-353 6-278 (290)
15 2qtl_A MSR;, methionine syntha 100.0 1.1E-37 3.6E-42 317.5 28.4 282 88-378 107-538 (539)
16 4dql_A Bifunctional P-450/NADP 100.0 8.2E-38 2.8E-42 307.5 26.2 268 94-378 5-391 (393)
17 3qfs_A CPR, P450R, NADPH--cyto 100.0 6.4E-37 2.2E-41 305.6 30.1 272 88-378 55-457 (458)
18 1f20_A Nitric-oxide synthase; 100.0 5.4E-37 1.9E-41 305.7 28.8 277 91-378 26-433 (435)
19 1umk_A B5R, NADH-cytochrome B5 100.0 3.7E-37 1.2E-41 289.2 20.1 241 88-354 9-267 (275)
20 4fk8_A Ferredoxin--NADP reduct 100.0 1.9E-38 6.4E-43 297.5 11.3 239 94-378 18-268 (271)
21 2bgi_A Ferredoxin-NADP(H) redu 100.0 7.6E-37 2.6E-41 286.9 20.1 240 94-378 15-266 (272)
22 2bpo_A CPR, P450R, NADPH-cytoc 100.0 1.4E-36 4.9E-41 317.9 22.6 277 92-378 256-682 (682)
23 4eh1_A Flavohemoprotein; struc 100.0 2.2E-36 7.5E-41 278.6 18.9 218 95-354 3-225 (243)
24 3qe2_A CPR, P450R, NADPH--cyto 100.0 2.7E-35 9.4E-40 305.0 28.0 271 92-378 219-617 (618)
25 2cnd_A NADH-dependent nitrate 100.0 4.2E-36 1.4E-40 281.1 19.4 244 91-363 8-266 (270)
26 2qdx_A Ferredoxin reductase; o 100.0 2.7E-36 9.3E-41 280.6 17.3 221 95-353 3-235 (257)
27 1gvh_A Flavohemoprotein; oxido 100.0 1E-35 3.6E-40 293.6 21.5 219 94-353 151-379 (396)
28 1tll_A Nitric-oxide synthase, 100.0 1.5E-34 5E-39 302.7 29.3 276 92-378 248-654 (688)
29 4g1v_A Flavohemoglobin; three 100.0 1.1E-34 3.9E-39 286.5 24.3 219 94-353 148-379 (399)
30 1cqx_A Flavohemoprotein; globi 100.0 2.5E-35 8.7E-40 291.5 19.4 223 94-353 153-385 (403)
31 1ep3_B Dihydroorotate dehydrog 100.0 2.4E-34 8.3E-39 268.4 19.9 206 95-352 5-212 (262)
32 2pia_A Phthalate dioxygenase r 100.0 1.1E-33 3.8E-38 271.7 22.8 205 92-351 5-214 (321)
33 2gpj_A Siderophore-interacting 100.0 2.1E-29 7E-34 233.8 16.2 206 93-354 6-216 (252)
34 3lrx_A Putative hydrogenase; a 99.9 1.2E-24 4E-29 187.7 3.7 133 203-355 1-138 (158)
35 3lyu_A Putative hydrogenase; t 99.9 6.8E-23 2.3E-27 173.5 5.8 126 209-354 3-132 (142)
36 3a1f_A Cytochrome B-245 heavy 99.8 2.9E-21 1E-25 169.7 5.7 140 209-354 1-171 (186)
37 1wri_A Ferredoxin II, ferredox 81.0 0.21 7E-06 37.8 -1.0 27 43-75 60-86 (93)
38 1czp_A Ferredoxin I; [2Fe-2S] 79.0 0.4 1.4E-05 36.5 -0.0 27 43-75 64-90 (98)
39 1iue_A Ferredoxin; electron tr 77.7 0.35 1.2E-05 36.9 -0.7 27 43-75 62-88 (98)
40 1awd_A Ferredoxin; electron tr 77.5 0.35 1.2E-05 36.5 -0.7 27 43-75 60-86 (94)
41 1a70_A Ferredoxin; iron-sulfur 76.3 0.32 1.1E-05 37.0 -1.2 27 43-75 62-88 (97)
42 1frr_A Ferredoxin I; electron 76.0 0.51 1.7E-05 35.5 -0.2 27 43-75 61-87 (95)
43 1jq4_A Methane monooxygenase c 72.5 0.29 9.8E-06 37.3 -2.4 29 41-75 65-93 (98)
44 1frd_A Heterocyst [2Fe-2S] fer 72.3 0.57 2E-05 35.5 -0.7 27 43-75 64-90 (98)
45 3lxf_A Ferredoxin; iron, iron- 69.9 1.1 3.6E-05 34.6 0.3 27 43-75 69-99 (104)
46 3hui_A Ferredoxin; cytochrome 61.8 2.2 7.4E-05 34.2 0.7 27 43-75 90-120 (126)
47 3s2u_A UDP-N-acetylglucosamine 60.0 6.4 0.00022 37.0 3.8 27 228-254 3-31 (365)
48 3ah7_A [2Fe-2S]ferredoxin; [2F 58.9 2.3 7.9E-05 33.0 0.4 26 44-75 72-99 (113)
49 2wlb_A ETP1-FD, electron trans 58.5 2.4 8.1E-05 32.3 0.4 26 44-75 72-101 (103)
50 1doi_A 2Fe-2S ferredoxin; halo 55.4 2.5 8.5E-05 33.9 0.0 27 43-75 86-114 (128)
51 1b9r_A Protein (terpredoxin); 54.8 1.9 6.7E-05 32.9 -0.7 27 43-75 69-100 (105)
52 2pia_A Phthalate dioxygenase r 51.9 3.5 0.00012 38.1 0.5 26 43-75 294-320 (321)
53 1uwm_A Ferredoxin VI, FDVI; el 50.7 3.7 0.00013 31.3 0.3 27 43-75 69-100 (106)
54 2y5c_A Adrenodoxin-like protei 48.1 3.9 0.00013 31.5 0.1 26 44-75 74-103 (109)
55 1xlq_A Putidaredoxin, PDX; [2F 46.7 4.7 0.00016 30.8 0.3 27 43-75 69-100 (106)
56 2bt6_A Adrenodoxin 1; rutheniu 44.6 5.3 0.00018 30.6 0.3 27 43-75 76-106 (108)
57 1l5p_A Ferredoxin; [2Fe-2S] cl 40.9 5.3 0.00018 29.7 -0.2 22 44-73 66-87 (93)
58 3zyy_X Iron-sulfur cluster bin 40.6 5.4 0.00018 40.7 -0.3 28 43-76 62-89 (631)
59 3fpp_A Macrolide-specific effl 38.2 18 0.00062 33.3 3.1 48 93-140 222-270 (341)
60 1i7h_A Ferredoxin; 2Fe-2S,elec 36.7 7.9 0.00027 29.8 0.2 17 56-75 82-99 (111)
61 3ddy_A Lumazine protein, LUMP; 35.3 2E+02 0.0068 24.2 8.8 79 94-213 102-182 (186)
62 2b7e_A PRE-mRNA processing pro 34.9 14 0.00048 25.3 1.2 37 337-373 1-38 (59)
63 1gut_A Mopii, molybdate bindin 32.7 1.1E+02 0.0038 20.4 6.1 41 94-140 7-61 (68)
64 1fr3_A MOP, molybdate/tungstat 27.7 97 0.0033 20.5 4.8 41 94-140 7-60 (67)
65 3ddy_A Lumazine protein, LUMP; 25.8 3E+02 0.01 23.1 8.5 77 96-214 8-86 (186)
66 4dk0_A Putative MACA; alpha-ha 25.4 14 0.00047 34.6 -0.3 26 116-141 266-292 (369)
67 3lnn_A Membrane fusion protein 25.4 2.2E+02 0.0074 26.0 8.2 46 93-140 236-282 (359)
No 1
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=3.8e-52 Score=398.40 Aligned_cols=293 Identities=53% Similarity=0.929 Sum_probs=253.7
Q ss_pred cccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccc
Q 017070 79 LEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIA 158 (378)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySia 158 (378)
..+..+++.|.+.|..++.++|++++++++++.++++++|+|+.+..+.|+||||+.|.+++.+ .+|.++..|+|||+
T Consensus 17 ~~~~~~~~~~~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~--~~g~~~~~R~ySia 94 (310)
T 3vo2_A 17 KKQDEGLVTNKYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEGEIPYREGQSIGIIADGED--KNGKPHKLRLYSIA 94 (310)
T ss_dssp SBSCTTCCCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBC--TTSCBCCCEEEECC
T ss_pred cccccCCceeeecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCCCCcccCCCEEEEECCCcC--CCCCcCcceeeecC
Confidence 4556678999999999999999999999998888889999999888889999999999998742 24555679999999
Q ss_pred cCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCc
Q 017070 159 STRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTG 238 (378)
Q Consensus 159 s~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtG 238 (378)
|+|..+..+.+.++|+||++.|.++ .+. .++|.+|+||+++++|++|.|.||+|.+++.+. +..+++||||||||
T Consensus 95 s~p~~~~~~~~~~~l~Vk~~~~~~~-~~~---~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~-~~~~~~vlIagGtG 169 (310)
T 3vo2_A 95 SSALGDFGDSKTVSLCVKRLVYTND-QGE---IVKGVCSNFLCDLKPGADVKITGPVGKEMLMPK-DPNATVIMLATGTG 169 (310)
T ss_dssp SCTTTTTTSSSEEEEEEECCEEECT-TSC---EEECHHHHHHHTCCTTCEEEEEEEECSTTCCBS-CTTCEEEEEEEGGG
T ss_pred CCCcccCCCCCEEEEEEEEEEeccC-CCC---cCCcchhhHHhcCCCCCEEEEEeccCCcccCCC-CCCCCEEEEeCCcc
Confidence 9996432235899999998755432 221 147999999999999999999999999887663 25689999999999
Q ss_pred chhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHh
Q 017070 239 IAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEE 318 (378)
Q Consensus 239 iaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~ 318 (378)
||||++|+++++.......++.++++||||+|+.++++|.+||++|.++++++|++++++|+++.+|.+.++|+++.+.+
T Consensus 170 IaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~ 249 (310)
T 3vo2_A 170 IAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAE 249 (310)
T ss_dssp GHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHT
T ss_pred hhHHHHHHHHHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHHHHH
Confidence 99999999999866543333347899999999999999999999999998879999999999988899999999999998
Q ss_pred hHHHHHhccC-CCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 319 YSDEIFKRLD-GGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 319 ~~~~l~~~~~-~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
..+++++.+. .+..||+|||++|++++++.|.+++.+.|+++++++++|+++|||++|||
T Consensus 250 ~~~~l~~~l~~~~~~vyvCGp~~M~~~v~~~L~~~~~~~g~~~~~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 250 YREELWELLKKDNTYVYMCGLKGMEKGIDDIMLNLAAKDGIDWMQYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp THHHHHHHHTSTTEEEEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHCCceEEecC
Confidence 8777766553 68899999999999999999999999999999999999999999999999
No 2
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=2.4e-51 Score=392.81 Aligned_cols=301 Identities=87% Similarity=1.488 Sum_probs=250.2
Q ss_pred ccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceeccc
Q 017070 78 ELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSI 157 (378)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySi 157 (378)
++..+...+.+.+.+...+.++|++++++++++...++++|+|+.+..+.|+||||+.|.+++.+...+|.+..+|+|||
T Consensus 11 ~l~~~~~~~~~~~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySi 90 (311)
T 3lo8_A 11 HLESAKEPPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSI 90 (311)
T ss_dssp GGGCCSSCCCCSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEB
T ss_pred chhhcccCCccccCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCCCcccCCCEEEEeCCCCccccCCCCCCceeeEe
Confidence 45666777888999999999999999999932222249999999988889999999999998743222344457999999
Q ss_pred ccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCC
Q 017070 158 ASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGT 237 (378)
Q Consensus 158 as~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGt 237 (378)
+|.|.++..+++.++|+||++.|+.|..+..+..++|.+|+||+++++|++|.|.||+|.+++.+..+..+++|||||||
T Consensus 91 as~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGt 170 (311)
T 3lo8_A 91 ASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGT 170 (311)
T ss_dssp CSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCCSCTTCEEEEEEEGG
T ss_pred cCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCCcCCCCCEEEEECCE
Confidence 99997532345799999999878888777665567899999999999999999999999998876322468999999999
Q ss_pred cchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHH
Q 017070 238 GIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIE 317 (378)
Q Consensus 238 GiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~ 317 (378)
|||||++|+++++..+....++.++++|||++|+.++++|.+||++|.++++++|++++++|+++..|.+.++++++.+.
T Consensus 171 GIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~ 250 (311)
T 3lo8_A 171 GVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIE 250 (311)
T ss_dssp GGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHH
T ss_pred EHHHHHHHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHH
Confidence 99999999999987654322223689999999999999999999999999877899999999998888888999999998
Q ss_pred hhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 318 EYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 318 ~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
+..+++.+.++....||+|||++|++++++.|.++..+.|.++++++++|+++|||++|||
T Consensus 251 ~~~~~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~~~~~g~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 251 EYSDEIFKLLDGGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp HTHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhhcCCcEEEEECCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCCcEEEecC
Confidence 8776665554577899999999999999999999999999999999999999999999999
No 3
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=3.3e-48 Score=371.63 Aligned_cols=298 Identities=51% Similarity=0.916 Sum_probs=242.4
Q ss_pred ecccccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCce
Q 017070 74 VSPLELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVR 153 (378)
Q Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R 153 (378)
++++........+.+.+.+..++.++|++++++++++...++++|+|+.+..+.|+||||+.|.+++.+ .+|.+..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~--~~g~~~~~R 93 (314)
T 1fnb_A 16 VEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGED--KNGKPHKLR 93 (314)
T ss_dssp ---CCSBSCTTCCCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBC--TTSSBCCCE
T ss_pred ccchhhhhcccCCccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCCCcCCCCEEEEecCCCC--cCCCcCCce
Confidence 334444444455666677778899999999999984444459999999887789999999999987632 123345789
Q ss_pred ecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEE
Q 017070 154 LYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMI 233 (378)
Q Consensus 154 ~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~I 233 (378)
+|||+|.|.++..+.+.++|+|+.+.|..+ .+. .++|.+|+||+++++|++|.|.||+|.|+..+. +..+++|||
T Consensus 94 ~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~-~g~---~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~-~~~~~~vlI 168 (314)
T 1fnb_A 94 LYSIASSALGDFGDAKSVSLCVKRLIYTND-AGE---TIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPK-DPNATIIML 168 (314)
T ss_dssp EEECCSCSSCTTSSSCEEEEEEECCEEECT-TSC---EEECHHHHHHHHCCTTCEEEEEEEECSTTCCBS-CTTCEEEEE
T ss_pred eEecCCCCcccCCCCCEEEEEEEEEEeccC-CCC---cCCCchhhHhhcCCCCCEEEEEeccCCceeCCC-CCCCCEEEE
Confidence 999999986421234789999998655432 111 146999999999999999999999999886653 246899999
Q ss_pred ecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchh
Q 017070 234 ATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQ 313 (378)
Q Consensus 234 AgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~ 313 (378)
|||||||||++|++++...+....+..++++||||+|+.++++|.+||++|.++++++|++++++|+++++|.+.+++++
T Consensus 169 agGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~ 248 (314)
T 1fnb_A 169 GTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQ 248 (314)
T ss_dssp EEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHH
T ss_pred eCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceech
Confidence 99999999999999988654221112368999999999999999999999999887689999999998888888899999
Q ss_pred HHHHhhHHHHHhccC-CCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 314 DKIEEYSDEIFKRLD-GGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 314 ~~i~~~~~~l~~~~~-~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
+.+.+...++.+.+. .+..||+|||++|++++++.|.+++.+.|+++++++++|+++|||++|||
T Consensus 249 ~~l~~~~~~~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~~~~~g~~~~~~~~~l~~~~r~~~d~~ 314 (314)
T 1fnb_A 249 TRMAQYAVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQWNVEVY 314 (314)
T ss_dssp HHHHTTHHHHHHHTTSTTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHCCcEEEecC
Confidence 999887766655453 57899999999999999999999999999999999999999999999999
No 4
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=4.8e-48 Score=382.38 Aligned_cols=290 Identities=51% Similarity=0.935 Sum_probs=243.4
Q ss_pred CCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCC
Q 017070 83 SQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTR 161 (378)
Q Consensus 83 ~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p 161 (378)
..+|.+.+.+..++.++|+++++++++.+.+++++|+|+.++ .+.|+||||+.|.+++.+ .+|.++.+|+|||+|.|
T Consensus 110 ~~~p~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~--~~g~~~~~R~ySIas~p 187 (402)
T 2b5o_A 110 TSVPVNIYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED--KNGKPHKLRLYSIASTR 187 (402)
T ss_dssp -CCCCCSSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE--TTTEECCCEEEEBCSCT
T ss_pred cCCCcccccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC--cCCCccCceeeeccCCC
Confidence 455777888888999999999999995555559999999876 488999999999987631 12333578999999998
Q ss_pred CCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCC-CEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcch
Q 017070 162 YGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPG-DKVLITGPSGKIMLLPEDNPNATHIMIATGTGIA 240 (378)
Q Consensus 162 ~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G-d~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGia 240 (378)
.++..+.+.++|+||++.|..|..+.. +.|.+|+||+++++| |+|.|.||+|.++..+. +..+++||||||||||
T Consensus 188 ~~~~~~~~~l~l~Vk~~~y~~~~~~~~---~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~-~~~~~vvlIAgGtGIa 263 (402)
T 2b5o_A 188 HGDMEDNKTVSLCVRQLEYQDPESGET---VYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPD-DEDATVVMLATGTGIA 263 (402)
T ss_dssp TTTTTSSCEEEEEEECCEEECTTTCCE---EECHHHHHHHTCCTTCCCEEEEEEECSTTCCCS-CTTCEEEEEEEGGGGH
T ss_pred ccccCCCCEEEEEEEEeeecccccCcC---CCCchhHHHhhCCCCCceEEEEcccCCcccCCc-cCCCCEEEEEcccCHH
Confidence 642223479999999876665543322 579999999999999 99999999999887653 2468999999999999
Q ss_pred hhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhH
Q 017070 241 PFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYS 320 (378)
Q Consensus 241 P~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~ 320 (378)
||++|+++++..+....+..++++||||+|+.++++|.+||++|.++++++|++++++|+++++|.+.++++++.+.+..
T Consensus 264 P~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~ 343 (402)
T 2b5o_A 264 PFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYA 343 (402)
T ss_dssp HHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTH
T ss_pred HHHHHHHHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHHHHHhH
Confidence 99999999887643221223689999999999999999999999999877899999999998888888999999998877
Q ss_pred HHHHhcc-CCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 321 DEIFKRL-DGGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 321 ~~l~~~~-~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
+++++.+ ..+..||+|||++|++++++.|.+++.+.|..+++++++|+++|||++|||
T Consensus 344 ~~l~~~l~~~~~~vyvCGP~~M~~~v~~~L~~~g~~~g~~~~~~~~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 344 DELFEMIQKPNTHVYMCGLKGMQPPIDETFTAEAEKRGLNWEEMRRSMKKEHRWHVEVY 402 (402)
T ss_dssp HHHHHHHTSTTEEEEEEECGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHhccCCcEEEEECCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHCCCEEEecC
Confidence 7766555 357899999999999999999999999999999999999999999999999
No 5
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=4.1e-47 Score=362.31 Aligned_cols=288 Identities=48% Similarity=0.890 Sum_probs=235.5
Q ss_pred CCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCC
Q 017070 85 PPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYG 163 (378)
Q Consensus 85 ~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~ 163 (378)
.+.+.+.+..++.++|+++++++++...+++++|+|+.+. .+.|+||||+.|.+++.+ .+|.+..+|+|||+|.|..
T Consensus 11 ~~~~~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~g~~~~~R~ySias~~~~ 88 (304)
T 2bmw_A 11 VPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD--KNGKPEKLRLYSIASTRHG 88 (304)
T ss_dssp CCCCSBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC--TTSCBCCCEEEEBCSCTTT
T ss_pred CcccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc--ccCCCCCCcceecCCCCcc
Confidence 3456666778899999999999994444459999999875 578999999999987632 1234457899999999863
Q ss_pred CCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhH
Q 017070 164 DSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFR 243 (378)
Q Consensus 164 ~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~ 243 (378)
+..+.+.++|+||.+.|..|..+. .+.|.+|+||+++++|++|.|.||+|.++..+. +..+++|||||||||||++
T Consensus 89 ~~~~~~~l~l~Vk~~~y~~~~~~~---~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~-~~~~~~vlIagGtGIaP~~ 164 (304)
T 2bmw_A 89 DDVDDKTISLCVRQLEYKHPESGE---TVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPD-DPEANVIMLAGGTGITPMR 164 (304)
T ss_dssp TTTSSSEEEEEEECCEECSSSSSS---CEECHHHHHHHTCCTTCEEEEEEEECSSSCCCS-CTTCEEEEEEEGGGHHHHH
T ss_pred cCCCCCEEEEEEEEEEeeccccCc---CCCcchhhHHhcCCCCCEEEEEeccCCceeCCC-CCCCCEEEEecCccHHHHH
Confidence 222347999999986554433221 146999999999999999999999999886653 2468999999999999999
Q ss_pred HHHHHHHhcc----CCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhh
Q 017070 244 GYLRRMFMES----VPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEY 319 (378)
Q Consensus 244 sil~~~~~~~----~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~ 319 (378)
+|+++++... ....+..++++||||+|+.++++|.+||+++.++++++|++++++|+++..|.++++++++.+.+.
T Consensus 165 s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~ 244 (304)
T 2bmw_A 165 TYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEH 244 (304)
T ss_dssp HHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHT
T ss_pred HHHHHHHHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHh
Confidence 9999987543 111111367999999999999999999999999887689999999999888888899999999877
Q ss_pred HHHHHhcc-CCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 320 SDEIFKRL-DGGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 320 ~~~l~~~~-~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
.+++.+.+ +.+..||+|||++|+++++++|.+++.+.|++++.++++|+++|||++|||
T Consensus 245 ~~~l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~~~~~g~~~~~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 245 ADQLWQLIKNQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 304 (304)
T ss_dssp HHHHHHHHTSTTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHhhcCCcEEEEECCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHcCCeEEecC
Confidence 66665544 357899999999999999999999999999999999999999999999999
No 6
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=2.2e-45 Score=351.99 Aligned_cols=295 Identities=34% Similarity=0.614 Sum_probs=229.3
Q ss_pred EEEeeeeeecccceeecccccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCc---------eEEEEeeCCCC-ccc
Q 017070 59 VVCMSVQQASKSKVAVSPLELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGE---------TCHIVIDHGGN-VPY 128 (378)
Q Consensus 59 l~C~~~~~~~~sd~~i~~~~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~---------v~~l~l~~~~~-~~~ 128 (378)
++| ++.+.+|+.+.. +.+..++.++|+++++++++++.++ +++|+|+.++. +.|
T Consensus 1 ~~~---~~~~~~~~~~~~-------------~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~ 64 (314)
T 2rc5_A 1 MHS---LMKPTREPQINL-------------FKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPY 64 (314)
T ss_dssp ---------CCSSCCCCS-------------BBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCC
T ss_pred CCc---cccCccccccCC-------------CCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcc
Confidence 369 999999999862 1224568999999999999866666 99999998764 889
Q ss_pred cCCcEEEEeCCCCCCCCCCCC-------CCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhh
Q 017070 129 WEGQSYGVIPPGENPKKPGNP-------HNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLC 201 (378)
Q Consensus 129 ~pGQ~v~l~~~~~~~~~~g~~-------~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~ 201 (378)
+||||+.|.+++.+. +|.+ +.+|+|||+|.|..+..+.+.++|+||.+.|..+. +. ..++|.+|+||+
T Consensus 65 ~pGQ~v~l~~~~~~~--~g~~~~~~~~~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~-g~--~~~~G~~S~~L~ 139 (314)
T 2rc5_A 65 VIGQSGGVIPPGEDP--EKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDEN-GN--IQFKGVCSNYMC 139 (314)
T ss_dssp CTTCEEEEECSSBCH--HHHHTTCSCCBCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--C-CS--CSSBCHHHHHHH
T ss_pred cCCCEEEEECCCCcc--ccCccchhhcCCCceeeeccCCccccCCCCCEEEEEEEEEeecCCC-CC--cCCCcchHHHHh
Confidence 999999999876310 0111 36799999999852111247899999986332211 10 013688999999
Q ss_pred cCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHH
Q 017070 202 NSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEF 281 (378)
Q Consensus 202 ~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del 281 (378)
++++|++|.|.||+|.+++.+..+..+++|||||||||||+++|++++...... +..++++||||+|+.++++|.+||
T Consensus 140 ~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~~--~~~~~v~l~~g~r~~~d~~~~~el 217 (314)
T 2rc5_A 140 DLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLI--KFTGNITLVYGAPYSDELVMMDYL 217 (314)
T ss_dssp TCCTTCEEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCSS--CBCSCEEEEEEESSGGGSCSHHHH
T ss_pred cCCCcCEEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhccc--CCCCcEEEEEEeCCHHHHhHHHHH
Confidence 999999999999999998766312468999999999999999999998765311 113579999999999999999999
Q ss_pred HHHHhhCCCceEEEEEeecccccc-CCCccchhHHHHhhHHHHHhccCCCeEEEEe-CCCCcHHHHHHHHHHHHHHcCCC
Q 017070 282 TKYLQDYPDNFRYDKALSREQKNK-KGGKMYVQDKIEEYSDEIFKRLDGGAHIYFC-GLKGMMPGIQETLKRVAEQRGES 359 (378)
Q Consensus 282 ~~l~~~~~~~~~~~~~~Sr~~~~~-~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvC-Gp~~m~~~v~~~L~~~g~~~g~~ 359 (378)
+++.++++ +|++++++|+++.+| .+.++++++.+.+..+++...+.....+|+| ||++|++++++.|.+++. .++.
T Consensus 218 ~~l~~~~~-~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~~yvCGGp~~m~~~v~~~L~~~g~-~~i~ 295 (314)
T 2rc5_A 218 KGLESKHK-NFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQKISG-NTGT 295 (314)
T ss_dssp HHHHHHHS-SEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCEEEEEESSTTTHHHHHHHHHHHHT-CCSC
T ss_pred HHHHHhCC-cEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCeEEEeCCcHHHHHHHHHHHHHHHh-ccch
Confidence 99998877 899999999986554 7788999999987665554434222335999 999999999999999988 7899
Q ss_pred HHHHHHHHHHcCCeEEeeC
Q 017070 360 WDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 360 ~~~~~~~l~~~~r~~~e~~ 378 (378)
.|.|..+|+++|||++|+|
T Consensus 296 ~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 296 YEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEecC
Confidence 9999999999999999999
No 7
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=2.2e-44 Score=345.44 Aligned_cols=278 Identities=31% Similarity=0.530 Sum_probs=216.8
Q ss_pred CCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCC--------------------
Q 017070 84 QPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENP-------------------- 143 (378)
Q Consensus 84 ~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~-------------------- 143 (378)
...+|.|.++.++.|+|+++++++..+.+++|++|+|+.++.++|+||||+.|.+|+.+.
T Consensus 4 ~~~~~~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (316)
T 3jqq_A 4 NNFINLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNH 83 (316)
T ss_dssp -CCBTSSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTTCCCCCTTCEEEECTTCC----------------------
T ss_pred CCceeeecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCCCcceecCcEeEEECCCccccccccccccccccccccccc
Confidence 346899999999999999999999777778899999999889999999999999988541
Q ss_pred --------CCCCCCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeC
Q 017070 144 --------KKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPS 215 (378)
Q Consensus 144 --------~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~ 215 (378)
...+....+|+|||+|+|.+ +.++|+||++.|..+.++ .+..++|.+|+||+++++|++|.|+||+
T Consensus 84 ~~h~~~~~~~~~g~~~~R~ySIaS~p~~-----~~l~l~Vk~~~y~~~~~~-~~~~~~G~~S~~L~~l~~Gd~v~v~gP~ 157 (316)
T 3jqq_A 84 TNHNNIALSHIKKQRCARLYSISSSNNM-----ENLSVAIKIHKYEQTENA-PNITNYGYCSGFIKNLKINDDIYLTGAH 157 (316)
T ss_dssp -------------CCCCEEEEBCSCTTS-----SSEEEEEECCBC----------CCBCHHHHHHHTCCTTCEEEEEEEE
T ss_pred ccccccccccCCCcccceeeecccCCCC-----CeEEEEEEEEEecccccc-cCcCCCCchhHHHhhCCCCCEEEEEecC
Confidence 00112358999999999864 579999998656543322 1223779999999889999999999999
Q ss_pred CCCCCCCCC-CCCCcEEEEecCCcchhhHHHHHHHHhccCC-----CcccCCeEEEEEeecCCCCcccHHHHHHHHhhCC
Q 017070 216 GKIMLLPED-NPNATHIMIATGTGIAPFRGYLRRMFMESVP-----TYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYP 289 (378)
Q Consensus 216 G~~~~~~~~-~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~-----~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~ 289 (378)
|.|.+.... ...+++||||||||||||++|++++...... .....++++||||+|+.++++|.+||++|.++++
T Consensus 158 G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~ 237 (316)
T 3jqq_A 158 GYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYP 237 (316)
T ss_dssp CCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHCT
T ss_pred CceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhCC
Confidence 998776510 0158999999999999999999999865410 0011368999999999999999999999999987
Q ss_pred CceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccC-CCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 017070 290 DNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLD-GGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLK 368 (378)
Q Consensus 290 ~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~-~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~ 368 (378)
++|++++++|++ .+|.+.++++++.+.+...++++.+. .+..||+|||++|++++++.|.+.|. . .. .
T Consensus 238 ~~~~~~~~~s~~-~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~~m~~~v~~~l~~~G~---~------~~-v 306 (316)
T 3jqq_A 238 NNINIHYVFSYK-QNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDILKSHDQ---F------DE-K 306 (316)
T ss_dssp TTEEEEEEEGGG-CC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECSTHHHHHHHHHHC-------------CH-H
T ss_pred CcEEEEEEECCC-cccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCHHHHHHHHHHHHHcCC---C------cc-c
Confidence 789999999998 46788899999999887666655442 57899999999999999999987651 1 11 4
Q ss_pred HcCCeEEeeC
Q 017070 369 KNKQWHVEVY 378 (378)
Q Consensus 369 ~~~r~~~e~~ 378 (378)
..+|+|.|+|
T Consensus 307 ~~~rih~E~f 316 (316)
T 3jqq_A 307 KKKRVHVEVY 316 (316)
T ss_dssp HHTTEEEEEC
T ss_pred ccccEEEEeC
Confidence 5679999998
No 8
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=9.7e-43 Score=336.89 Aligned_cols=256 Identities=24% Similarity=0.365 Sum_probs=212.1
Q ss_pred cccccccccccCCcCCccEEEEeeeeeecccceeecccccccCCCCCCCCCCCCCCeEEEEeEEEEecCCCCCCceEEEE
Q 017070 40 APVLSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVSPLELEERSQPPLNLYKPKEPYTATIVSVERVVGAKAPGETCHIV 119 (378)
Q Consensus 40 ~~~~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~~~~~~~~~~~~~~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~ 119 (378)
.....|++++++. |++|+| |+.+.+|++|+. +...... ..+...+.++|++++.++++ +++|+
T Consensus 65 ~~~~~l~~~~~~~---g~~LaC---q~~~~~~~~v~~---~~~~~~~---~~~~~~~~~~V~~~~~~~~~-----~~~l~ 127 (338)
T 1krh_A 65 YIEDALTPEEAQQ---GYVLAC---QCRPTSDAVFQI---QASSEVC---KTKIHHFEGTLARVENLSDS-----TITFD 127 (338)
T ss_dssp SCTTTCCHHHHHH---TEEETT---TCEESSSEEEEE---SSCTTGG---GCCCEEEEEEEEEEEESSSS-----EEEEE
T ss_pred cccccCCHHHHhC---CeEEEE---eCEECCCeEEEE---ecccccc---cCCceEEEEEEEEEEEcCCC-----EEEEE
Confidence 3456788888888 999999 999999999973 2221110 12245689999999999998 99999
Q ss_pred eeCCC---CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCch
Q 017070 120 IDHGG---NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGIC 196 (378)
Q Consensus 120 l~~~~---~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~ 196 (378)
|+.+. .+.|.||||+.|.+++. ...|+|||+|.|.+ +.++|+||.+ ++|.+
T Consensus 128 l~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~R~ySi~s~~~~-----~~l~~~vk~~-------------~~G~~ 181 (338)
T 1krh_A 128 IQLDDGQPDIHFLAGQYVNVTLPGT--------TETRSYSFSSQPGN-----RLTGFVVRNV-------------PQGKM 181 (338)
T ss_dssp EEECTTCCCCCCCTTCEEEEECTTS--------SCEEEEECCSCTTC-----SEEEEEEECC-------------TTCHH
T ss_pred EEeCCCCCCCCcCCCCeEEEEcCCC--------CccccccccCCCCC-----CeEEEEEEEc-------------CCCCc
Confidence 99876 57899999999999863 36899999999862 7899999987 78999
Q ss_pred hhHhh-cCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCc
Q 017070 197 SNFLC-NSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSL 275 (378)
Q Consensus 197 S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~ 275 (378)
|+||+ ++++||+|.|.||+|.|++.+. .+++|||||||||||+++|++++...+. .++++|+|++|+.+++
T Consensus 182 S~~L~~~l~~Gd~v~v~gP~G~f~~~~~---~~~~vliagGtGiaP~~s~l~~l~~~~~-----~~~v~l~~~~r~~~d~ 253 (338)
T 1krh_A 182 SEYLSVQAKAGDKMSFTGPFGSFYLRDV---KRPVLMLAGGTGIAPFLSMLQVLEQKGS-----EHPVRLVFGVTQDCDL 253 (338)
T ss_dssp HHHHHTTCCTTCEEEEEEEECSCSCCCC---SSCEEEEEEGGGHHHHHHHHHHHHHHCC-----SSCEEEEEEESSGGGC
T ss_pred hhhHhhccCCCCEEEEECCccceEeCCC---CceEEEEEccccHhHHHHHHHHHHHcCC-----CCeEEEEEEeCCHHHh
Confidence 99996 5999999999999999987652 4899999999999999999999987653 2679999999999999
Q ss_pred ccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 276 LYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 276 ~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
+|.++|++|.++++ +|++++++++++..|. .+|++++.+.+. .+. +.+..||+|||++|++++++.|.+.|
T Consensus 254 ~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~-~~g~v~~~l~~~---~~~--~~~~~vy~CGp~~m~~~v~~~l~~~G 324 (338)
T 1krh_A 254 VALEQLDALQQKLP-WFEYRTVVAHAESQHE-RKGYVTGHIEYD---WLN--GGEVDVYLCGPVPMVEAVRSWLDTQG 324 (338)
T ss_dssp CCHHHHHHHHHHCT-TEEEEEEETTCCSSSS-EESCSGGGCCGG---GGG--GGCSEEEEEEEHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHhCC-CeEEEEEEecCCCCCC-ccCccCHHHHHh---hcc--cCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 99999999999888 8999999999876664 577888766521 111 14568999999999999999997654
No 9
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=1.7e-40 Score=324.97 Aligned_cols=269 Identities=32% Similarity=0.560 Sum_probs=224.7
Q ss_pred CCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCC-----------C-------------
Q 017070 90 YKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP-----------K------------- 144 (378)
Q Consensus 90 ~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~-----------~------------- 144 (378)
+..+.++.++|+++++|++.++..++++|.|+.++ .+.|.||+++.|.+.+... .
T Consensus 6 ~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~~~~~t 85 (374)
T 1ddg_A 6 YSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLP 85 (374)
T ss_dssp CBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEETTEEEE
T ss_pred CCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEECCCCcc
Confidence 45567899999999999998888899999999854 6899999999998876310 0
Q ss_pred -------------------------------------CC------------------------------CCCCCceeccc
Q 017070 145 -------------------------------------KP------------------------------GNPHNVRLYSI 157 (378)
Q Consensus 145 -------------------------------------~~------------------------------g~~~~~R~ySi 157 (378)
+. ..+..+|+|||
T Consensus 86 l~~~l~~~~di~~p~~~~l~~la~~~~~~~L~~l~~~~~~~~~~~~~~~~~~vl~~~p~~~~~Gq~v~l~~~~~~R~YSI 165 (374)
T 1ddg_A 86 LNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSI 165 (374)
T ss_dssp HHHHHHHHBCCSCCCHHHHHHHHHHHTCTTTGGGTTCTHHHHHHHHHSCHHHHHHHSCCCCCHHHHHHHSCBCCCEEEEB
T ss_pred HHHHHHhcccCCCCCHHHHHHHHHHCCCHHHHHHhcChHHHHHHHcCCCHHHHHHHCCCCCCHHHHHhhccCCCCcccee
Confidence 00 02356899999
Q ss_pred ccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEee-CCCCCCCCCCCCCCcEEEEec
Q 017070 158 ASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGP-SGKIMLLPEDNPNATHIMIAT 235 (378)
Q Consensus 158 as~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP-~G~~~~~~~~~~~~~vv~IAg 235 (378)
+|+|.. +++.++|+|+.+.|..+ +. .++|.+|+||++ +++|++|.|.|| .|.|.+.. +..+++||||+
T Consensus 166 aSsp~~---~~~~i~l~V~~v~~~~~--~~---~~~G~~S~~L~~~l~~Gd~v~v~~~~~g~F~lp~--~~~~piimIa~ 235 (374)
T 1ddg_A 166 ASSQAE---VENEVHVTVGVVRYDVE--GR---ARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPA--NPETPVIMIGP 235 (374)
T ss_dssp CCCTTT---SCSEEEEEEEECEEEET--TE---EEECHHHHHHHHSCCSSCEEEEEEECCTTSCCCS--STTSCEEEECC
T ss_pred cCCCCC---CCCEEEEEEEEEEeecC--CC---CCCCCchHHHHhcCCCCCEEEEEEeeCCCccCCC--CCCCCEEEEEC
Confidence 999864 24799999999766543 11 257999999998 999999999994 55776654 35689999999
Q ss_pred CCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCC-CCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhH
Q 017070 236 GTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANP-DSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQD 314 (378)
Q Consensus 236 GtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~-~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~ 314 (378)
|||||||++|++++...+. .++++||||+|+. ++++|.+||++|.++++ ++++++++||++. .++|+++
T Consensus 236 GtGIAP~~s~l~~~~~~~~-----~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~-~~~l~~a~Srd~~----~k~yVq~ 305 (374)
T 1ddg_A 236 GTGIAPFRAFMQQRAADEA-----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV-LTRIDLAWSRDQK----EKVYVQD 305 (374)
T ss_dssp GGGGHHHHHHHHHHHHHTC-----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTS-CCEEEEEETTSSS----SCCCHHH
T ss_pred CccHHHHHHHHHHHHhcCC-----CCCEEEEEEeCCchhhhhHHHHHHHHHHhCC-CcEEEEEEecCCC----CCccHHH
Confidence 9999999999999887653 2679999999998 68999999999998886 7899999999863 4789999
Q ss_pred HHHhhHHHHHhccCCCeEEEEeC-CCCcHHHHHHHHHHHHHHcC----CCHHHHHHHHHHcCCeEEeeC
Q 017070 315 KIEEYSDEIFKRLDGGAHIYFCG-LKGMMPGIQETLKRVAEQRG----ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 315 ~i~~~~~~l~~~~~~~~~vyvCG-p~~m~~~v~~~L~~~g~~~g----~~~~~~~~~l~~~~r~~~e~~ 378 (378)
++.+..+++++++++++.||+|| |++|++++.++|.+++.+.| ..+++++++|+++|||++|||
T Consensus 306 ~l~~~~~~l~~~l~~~~~vYvCG~p~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv~ 374 (374)
T 1ddg_A 306 KLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 374 (374)
T ss_dssp HHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHhHHHHHHHHhCCcEEEEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Confidence 99988777777665688999999 99999999999999998876 467789999999999999999
No 10
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=100.00 E-value=7.1e-40 Score=303.58 Aligned_cols=220 Identities=22% Similarity=0.341 Sum_probs=189.5
Q ss_pred CCCCeEEEEeEEEEecCCCCCCceEEEEeeC-C-C----CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCC
Q 017070 92 PKEPYTATIVSVERVVGAKAPGETCHIVIDH-G-G----NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDS 165 (378)
Q Consensus 92 ~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~-~-~----~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~ 165 (378)
....+.++|++++.++++ +++|+|+. + + .+.|.||||+.|.+++. ...|+|||+|.|.+
T Consensus 7 ~~~~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~R~ySi~s~~~~-- 71 (250)
T 1tvc_A 7 EVGSFEAEVVGLNWVSSN-----TVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGT--------DVSRSYSPANLPNP-- 71 (250)
T ss_dssp CSSEEEEEBCCCEEEETT-----EEEEEECSSTTSSSSSCCSCCSCCEEEECTTSC--------SSSEEECCBCCSSS--
T ss_pred CcceEEEEEEEEEEcCCC-----eEEEEEEecCCCCcccccCcCCCcEEEEEeCCC--------ccccccccCCCCCC--
Confidence 346689999999999998 99999998 6 5 47899999999999763 37899999999864
Q ss_pred CCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhh-cCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHH
Q 017070 166 FDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLC-NSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRG 244 (378)
Q Consensus 166 ~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~s 244 (378)
.+.++|+||.. ++|.+|+||+ ++++||+|.|.||+|.|++.+. ..+++|||||||||||+++
T Consensus 72 --~~~l~i~vk~~-------------~~G~~s~~l~~~l~~Gd~v~v~gP~G~~~~~~~--~~~~~vliagGtGiaP~~~ 134 (250)
T 1tvc_A 72 --EGRLEFLIRVL-------------PEGRFSDYLRNDARVGQVLSVKGPLGVFGLKER--GMAPRYFVAGGTGLAPVVS 134 (250)
T ss_dssp --SCCEEEEECCC-------------TTSSSHHHHHHHSSSSSEEEEEEEECCCSCCCC--SSSCEEEEEESSTTHHHHH
T ss_pred --CCeEEEEEEEC-------------CCCCchHHHHhcCCCCCEEEEEcCccccccCcc--CCceEEEEEeccCHHHHHH
Confidence 27899999987 7899999997 6999999999999999988652 3589999999999999999
Q ss_pred HHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHH
Q 017070 245 YLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIF 324 (378)
Q Consensus 245 il~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~ 324 (378)
|++++...+. ..+++|+|++|+.++++|.++|++|.++++ +|++++++|+++++|.+.+|++++.+.+.+.+
T Consensus 135 ~l~~l~~~~~-----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~~-- 206 (250)
T 1tvc_A 135 MVRQMQEWTA-----PNETRIYFGVNTEPELFYIDELKSLERSMR-NLTVKACVWHPSGDWEGEQGSPIDALREDLES-- 206 (250)
T ss_dssp HHHHHHHHTC-----CSCEEEEEECSSSTTCCCHHHHHHHHHHSS-SCEEEECCSSCSSCCSSSSSSSSHHHHHHHHH--
T ss_pred HHHHHHhcCC-----CceEEEEEEeCCHHHhhhHHHHHHHHHhCC-CeEEEEEeccCCCCcCCccceehHHHHhhhhc--
Confidence 9999987642 257999999999999999999999998887 89999999998778888889998877654332
Q ss_pred hccCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 325 KRLDGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 325 ~~~~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
...+..||+|||++|++++++.|.+.|
T Consensus 207 --~~~~~~vyvCGp~~m~~~v~~~l~~~G 233 (250)
T 1tvc_A 207 --SDANPDIYLCGPPGMIDAACELVRSRG 233 (250)
T ss_dssp --SSSSSEEEEESSHHHHHHHHHHHHHHC
T ss_pred --ccCCcEEEEeCCHHHHHHHHHHHHHcC
Confidence 125678999999999999999987654
No 11
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=100.00 E-value=1.2e-39 Score=298.44 Aligned_cols=214 Identities=16% Similarity=0.163 Sum_probs=179.0
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLCV 175 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~I 175 (378)
+.++|+++++++++ +++|+|+.+..+.|+||||+.|.+++ ...|+|||+|.|.+ .+.++|+|
T Consensus 3 ~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~pGq~v~l~~~~---------~~~R~ySi~s~~~~----~~~l~l~i 64 (232)
T 1qfj_A 3 LSCKVTSVEAITDT-----VYRVRIVPDAAFSFRAGQYLMVVMDE---------RDKRPFSMASTPDE----KGFIELHI 64 (232)
T ss_dssp EEEEEEEEEESSSS-----CEEEEEEESSCCCCCTTCEEEEESSS---------SCEEEEECCSCTTS----TTCEEEEE
T ss_pred eEEEEEEEEecCCC-----EEEEEEecCCCCCcCCCCEEEEECCC---------CceeeeecCCCCCC----CCcEEEEE
Confidence 67999999999998 99999998777899999999999986 37899999999864 26899999
Q ss_pred EEeeeecCCCCCCCCCCCCchhhHh-hcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccC
Q 017070 176 RRAVYYDPESGKEDPSKSGICSNFL-CNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESV 254 (378)
Q Consensus 176 r~~~~~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~ 254 (378)
|.. ++|.+|.++ .++++||+|.|.||+|.|++.+. ..+++|||||||||||+++|++++...+.
T Consensus 65 ~~~-------------~~G~~s~~~~~~l~~Gd~v~v~gP~G~~~~~~~--~~~~~vliagG~GitP~~~~l~~l~~~~~ 129 (232)
T 1qfj_A 65 GAS-------------EINLYAKAVMDRILKDHQIVVDIPHGEAWLRDD--EERPMILIAGGTGFSYARSILLTALARNP 129 (232)
T ss_dssp C-------------------CCHHHHHHHHHHSEEEEEEEECSCCCCSC--SSSCEEEEEETTCHHHHHHHHHHHHHHCT
T ss_pred EEc-------------cCCchhHHHHHhCCCCCEEEEeCCccceEeCCC--CCCcEEEEEecccHhHHHHHHHHHHhcCC
Confidence 987 667777765 55999999999999999988762 46899999999999999999999987652
Q ss_pred CCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEE
Q 017070 255 PTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIY 334 (378)
Q Consensus 255 ~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vy 334 (378)
.++++|+|++|+.++++|.++|+++.++++ ++++++++++++++|.+.+|++++.+.+. +. . ..+..+|
T Consensus 130 -----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~~~~~---~~-~-~~~~~vy 198 (232)
T 1qfj_A 130 -----NRDITIYWGGREEQHLYDLCELEALSLKHP-GLQVVPVVEQPEAGWRGRTGTVLTAVLQD---HG-T-LAEHDIY 198 (232)
T ss_dssp -----TCCEEEEEEESSGGGCTTHHHHHHHHHHCT-TEEEEEEESSCCTTCCSEESCHHHHHHHH---CS-C-CTTCEEE
T ss_pred -----CCcEEEEEeeCCHHHhhhHHHHHHHHHHCC-CeEEEEEEcCCCCCcCCceeeHHHHHHHh---cC-C-ccccEEE
Confidence 257999999999999999999999999888 89999999998888888888888766542 11 1 2567899
Q ss_pred EeCCCCcHHHHHHHH-HHHH
Q 017070 335 FCGLKGMMPGIQETL-KRVA 353 (378)
Q Consensus 335 vCGp~~m~~~v~~~L-~~~g 353 (378)
+|||++|++++++.| .+.|
T Consensus 199 vCGp~~m~~~v~~~l~~~~g 218 (232)
T 1qfj_A 199 IAGRFEMAKIARDLFCSERN 218 (232)
T ss_dssp EESCHHHHHHHHHHHHHHSC
T ss_pred EECCHHHHHHHHHHHHHHcC
Confidence 999999999999888 5543
No 12
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=100.00 E-value=3.7e-38 Score=290.63 Aligned_cols=224 Identities=22% Similarity=0.284 Sum_probs=186.6
Q ss_pred CCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC---CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCC
Q 017070 91 KPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG---NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFD 167 (378)
Q Consensus 91 ~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~ 167 (378)
.+...+.++|++++.++++ +.+++|..+. .+.|.||||+.|.++..+ ....|+|||+|.+.+
T Consensus 7 ~~~~~~~~~v~~~~~~t~~-----~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g------~~~~R~ysi~s~~~~---- 71 (243)
T 2eix_A 7 NPNEYKKFMLREKQIINHN-----TRLFRFNLHHPEDVVGLPIGQHMSVKATVDG------KEIYRPYTPVSSDDE---- 71 (243)
T ss_dssp CSSSCEEEEEEEEEEEETT-----EEEEEEECSSTTCCCCCCTTCEEEEEEEETT------EEEEEEECCCSCTTC----
T ss_pred CCCceEEEEEEEEEEeCCC-----eEEEEEEcCCCCcccCcCCceEEEEEEeeCC------CEEEeeeeecCCCCC----
Confidence 4456789999999999998 9999998764 367999999999987321 136899999999864
Q ss_pred CCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHH
Q 017070 168 GKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLR 247 (378)
Q Consensus 168 ~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~ 247 (378)
.+.++|+||.. ++|.+|+||+++++||+|.|.||+|.|.+.+ +..+++|||||||||||+++|++
T Consensus 72 ~~~~~l~vk~~-------------~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~~--~~~~~~vliagG~GiaP~~~~l~ 136 (243)
T 2eix_A 72 KGYFDLIIKVY-------------EKGQMSQYIDHLNPGDFLQVRGPKGQFDYKP--NMVKEMGMIAGGTGITPMLQVAR 136 (243)
T ss_dssp CSEEEEEEECC-------------TTCHHHHHHHTCCTTCEEEEEEEECSCCCCT--TSSSEEEEEEEGGGHHHHHHHHH
T ss_pred CCEEEEEEEEc-------------CCCCcchHhhcCCCCCEEEEECCeEEEEeCC--CCCcEEEEEecCccHHHHHHHHH
Confidence 37899999987 7899999999999999999999999987765 24689999999999999999999
Q ss_pred HHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHH-HHhhHHHHHhc
Q 017070 248 RMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDK-IEEYSDEIFKR 326 (378)
Q Consensus 248 ~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~-i~~~~~~l~~~ 326 (378)
++...... ..+++|+|++|+.++++|.+||++|.++++ ++++++++|+++++|.+..|++++. +.+ +...
T Consensus 137 ~l~~~~~~----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~~l~~----~~~~ 207 (243)
T 2eix_A 137 AIIKNPKE----KTIINLIFANVNEDDILLRTELDDMAKKYS-NFKVYYVLNNPPAGWTGGVGFVSADMIKQ----HFSP 207 (243)
T ss_dssp HHHTCTTC----CCEEEEEEEEEEGGGCTTHHHHHHHHHHCT-TEEEEEEEEECCTTCCSEESSCCHHHHHH----HSCC
T ss_pred HHHhCCCC----CcEEEEEEEcCCHHHhhHHHHHHHHHHHCC-CeEEEEEeCCCCccccCcCCccCHHHHHH----hcCC
Confidence 98765221 368999999999999999999999999888 9999999999877787778888753 332 2121
Q ss_pred cCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 327 LDGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 327 ~~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
...+..||+|||++|++++++.|.+.|
T Consensus 208 ~~~~~~vy~CGp~~m~~~v~~~l~~~G 234 (243)
T 2eix_A 208 PSSDIKVMMCGPPMMNKAMQGHLETLG 234 (243)
T ss_dssp TTSSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 225678999999999999999987654
No 13
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=100.00 E-value=2e-38 Score=293.30 Aligned_cols=239 Identities=20% Similarity=0.193 Sum_probs=192.8
Q ss_pred CeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEE
Q 017070 95 PYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLC 174 (378)
Q Consensus 95 ~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~ 174 (378)
.+.++|++++.++++ +++|+|. +..+.|.||||+.|.++..+ ....|+|||+|.|.+ +.++|+
T Consensus 4 ~~~~~V~~~~~~~~~-----~~~l~l~-~~~~~~~pGq~v~l~~~~~g------~~~~R~ySi~s~~~~-----~~l~~~ 66 (248)
T 1fdr_A 4 WVTGKVTKVQNWTDA-----LFSLTVH-APVLPFTAGQFTKLGLEIDG------ERVQRAYSYVNSPDN-----PDLEFY 66 (248)
T ss_dssp EEEEEEEEEEECSSS-----EEEEEEE-CCCCCCCTTCEEEEEECC---------CEEEEEECCSCTTC-----SSEEEE
T ss_pred eEEEEEEEEEEcCCC-----EEEEEEe-CCCCCcCCCCcEEEEccCCC------CeeeeeecccCCCCC-----CcEEEE
Confidence 578999999999998 9999997 45678999999999987532 147899999999864 679999
Q ss_pred EEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEE-eeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhcc
Q 017070 175 VRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLIT-GPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMES 253 (378)
Q Consensus 175 Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~ 253 (378)
|+.+ ++|.+|+||+++++||+|.|. ||+|.|.+... ...+++|||||||||||+++|++++...+
T Consensus 67 v~~~-------------~~G~~s~~l~~l~~Gd~v~v~~gP~G~f~l~~~-~~~~~~vliagG~GitP~~~~l~~l~~~~ 132 (248)
T 1fdr_A 67 LVTV-------------PDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEV-PHCETLWMLATGTAIGPYLSILRLGKDLD 132 (248)
T ss_dssp EECC-------------TTCSSHHHHHTCCTTCEEEEESSCBCCCSGGGS-CCCSEEEEEEEGGGGHHHHHHHHHCCSCT
T ss_pred EEEe-------------CCCchhhHHHhCCCcCEEEEecCCcceeEcCCC-CCCceEEEEEecccHHHHHHHHHHHHhhC
Confidence 9987 789999999999999999999 99999876542 12589999999999999999999876543
Q ss_pred CCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhh-HHHHHhc-c-CCC
Q 017070 254 VPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEY-SDEIFKR-L-DGG 330 (378)
Q Consensus 254 ~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~-~~~l~~~-~-~~~ 330 (378)
. .++++|+|++|+.++++|.++|+++.++++++|++++++|+++. +.+..|++++.+.+. +.+.... . ..+
T Consensus 133 ~-----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~~~l~~~~~~~~~~~~ 206 (248)
T 1fdr_A 133 R-----FKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIESGELESTIGLPMNKET 206 (248)
T ss_dssp T-----CSEEEEEEEESSGGGCTTHHHHHHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHTSHHHHHHTSCCCTTT
T ss_pred C-----CCcEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHhhhHHHhhccCCCccC
Confidence 2 26899999999999999999999999888668999999998753 223467888876643 2332221 2 257
Q ss_pred eEEEEeCCCCcHHHHHHHH-HHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 331 AHIYFCGLKGMMPGIQETL-KRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 331 ~~vyvCGp~~m~~~v~~~L-~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
..||+|||++|++++++.| .+.|.... ++...++|+.|.|
T Consensus 207 ~~vy~CGp~~m~~~v~~~l~~~~G~~~~--------~i~~~~~~~~E~~ 247 (248)
T 1fdr_A 207 SHVMLCGNPQMVRDTQQLLKETRQMTKH--------LRRRPGHMTAEHY 247 (248)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHCCCBC--------BTTBCCSEEEEEC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHcCCChH--------HcCCCccEEEEec
Confidence 8999999999999999998 76544332 3456789999987
No 14
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=100.00 E-value=3.4e-38 Score=298.29 Aligned_cols=242 Identities=24% Similarity=0.416 Sum_probs=186.6
Q ss_pred CCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC--CccccCCcEEEEeCCCCCC-----CC------------------C
Q 017070 92 PKEPYTATIVSVERVVGAKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGENP-----KK------------------P 146 (378)
Q Consensus 92 ~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~~~~~~-----~~------------------~ 146 (378)
+.+.+.++|++++.++++ +++|+|..+. .+.|+||||+.|.++..+. .. .
T Consensus 6 ~~~~~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 80 (290)
T 2r6h_A 6 GVKEWECEVLSNKNVSTF-----IKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCK 80 (290)
T ss_dssp CCCEEEEEEEEEEESSSS-----EEEEEEECSTTCCCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEE
T ss_pred cceEEEEEEEEeeecCCC-----eEEEEEEcCCCCccccCCCceEEEEcccccccccccccchhhccccccccccccccc
Confidence 346689999999999998 9999999875 5789999999998874200 00 0
Q ss_pred CCCCCceecccccCCCCCCCCCCEEEEEEEEeee-ecCC-CCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCCCC
Q 017070 147 GNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVY-YDPE-SGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLPED 224 (378)
Q Consensus 147 g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~-~~~~-~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~ 224 (378)
+.....|+|||+|.|.+ .+.++|+||.... ++.. .+.....+.|.+|+||+++++||+|.|.||+|.|++..
T Consensus 81 ~~~~~~R~ySi~s~~~~----~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~~-- 154 (290)
T 2r6h_A 81 NEEETVRAYSMANYPAE----GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHIQD-- 154 (290)
T ss_dssp ECSCEEEEEECCSCTTC----CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECCCCCCS--
T ss_pred CCCCcceeeeccCCCCC----CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccCCcCCC--
Confidence 01247899999999864 3789999986310 0000 00000015799999999999999999999999998754
Q ss_pred CCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccc--
Q 017070 225 NPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQ-- 302 (378)
Q Consensus 225 ~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~-- 302 (378)
..+++|||||||||||+++|+++++..... .++++|+|++|+.++++|.+||+++.++++ +|++++++|++.
T Consensus 155 -~~~~~vliagGtGitP~~s~l~~~~~~~~~----~~~v~l~~~~r~~~d~~~~~el~~l~~~~~-~~~~~~~~s~~~~~ 228 (290)
T 2r6h_A 155 -TDAEMLYIGGGAGMAPLRAQILHLFRTLKT----GRKVSYWYGARSKNEIFYEEDFREIEREFP-NFKFHIALSDPQPE 228 (290)
T ss_dssp -SSCEEEEEEEGGGHHHHHHHHHHHHHTSCC----CSCEEEEEEESSGGGCCSHHHHHHHHHHCT-TEEEEEEESSCCGG
T ss_pred -CCCeEEEEECccCHHHHHHHHHHHHHhcCC----CCcEEEEEEcCCHHHHHHHHHHHHHHHhCC-CeEEEEEEccCCcc
Confidence 468999999999999999999988765322 367999999999999999999999998887 899999999863
Q ss_pred cccCCCccchhHHHHhhHHHHHhc-c-CCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 303 KNKKGGKMYVQDKIEEYSDEIFKR-L-DGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 303 ~~~~~~~~~v~~~i~~~~~~l~~~-~-~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
+.|.+..|++++.+.+. ++.. . ..+..||+|||++|++++++.|.+.|
T Consensus 229 ~~~~g~~g~v~~~~~~~---~l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G 278 (290)
T 2r6h_A 229 DNWTGYVGFIHQVIYDN---YLKDHDAPEDIEYYMCGPGPMANAVKGMLENLG 278 (290)
T ss_dssp GCCCSCBSCHHHHHHHH---TTTTCSCGGGEEEEEECCHHHHHHHHHHHHHHT
T ss_pred cCCCCeeEecCHHHHHh---HHhhccCcCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 46777788888766331 1111 1 24678999999999999999987654
No 15
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=1.1e-37 Score=317.47 Aligned_cols=282 Identities=22% Similarity=0.385 Sum_probs=216.1
Q ss_pred CCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCC---------------C-------
Q 017070 88 NLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP---------------K------- 144 (378)
Q Consensus 88 ~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~---------------~------- 144 (378)
..+....++.++|+++++|++..+..++++|.|+.++ .+.|.||+++.|.+.+... +
T Consensus 107 ~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~~~ 186 (539)
T 2qtl_A 107 SVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLLKI 186 (539)
T ss_dssp ------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEEEE
T ss_pred CCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEEec
Confidence 3455678899999999999998888899999999875 4799999999998764310 0
Q ss_pred -----C--------------------------------------------------------CC----------------
Q 017070 145 -----K--------------------------------------------------------PG---------------- 147 (378)
Q Consensus 145 -----~--------------------------------------------------------~g---------------- 147 (378)
+ .|
T Consensus 187 ~~~~~~~~~~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~~ll 266 (539)
T 2qtl_A 187 KADTKKKGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACACLL 266 (539)
T ss_dssp CTTCCCTTCCCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTTCCHH
T ss_pred cccccCCCccCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcCCCHH
Confidence 0 00
Q ss_pred --------------------CCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcC----
Q 017070 148 --------------------NPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNS---- 203 (378)
Q Consensus 148 --------------------~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l---- 203 (378)
.+..+|+|||+|+|.. +++.++|+|+.+.|..+. + ....++|.+|+||+++
T Consensus 267 dvL~~fps~~~p~~~ll~~lp~l~~R~YSIsSsp~~---~~~~i~ltV~~v~~~~~~-~-~~~~~~G~~S~~L~~l~~~~ 341 (539)
T 2qtl_A 267 DLLLAFPSCQPPLSLLLEHLPKLQPRPYSCASSSLF---HPGKLHFVFNIVEFLSTA-T-TEVLRKGVCTGWLALLVASV 341 (539)
T ss_dssp HHHHHSTTBCCCHHHHHHHSCBCCCEEEECCSCTTT---STTEEEEEEECCEEECSC-S-SCSEEECHHHHHHHHHTTTT
T ss_pred HHHHhCCCcCCCHHHHHHhCcCCcceEEeecCCccC---CCCEEEEEEEEEEeccCC-C-CCcCCCCchhhHHHHhhhhh
Confidence 1236799999999863 247999999987554321 1 1112569999999985
Q ss_pred -------CCCC-------EEEEEeeCC-CCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhcc--CCCcccCCeEEEE
Q 017070 204 -------KPGD-------KVLITGPSG-KIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMES--VPTYKFGGLAWLF 266 (378)
Q Consensus 204 -------~~Gd-------~v~v~GP~G-~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~--~~~~~~~~~v~L~ 266 (378)
++|+ +|.|.+|.| .|.+.. +...++||||+|||||||++|++++.... ... ...++++||
T Consensus 342 ~~~~~~~~~Gd~~~~~~~~V~v~~p~g~~F~Lp~--~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~-~~~~~v~Lf 418 (539)
T 2qtl_A 342 LQPNIHASHEDSGKALAPKISIFPRTTNSFHLPD--DPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPD-GNFGAMWLF 418 (539)
T ss_dssp C--------------CCCEEEEEECSCCCCCCCS--STTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTT-CCCCCEEEE
T ss_pred ccccccCCCCCccccCceEEEEEeeeCCCccCCc--cCCCCEEEEEcCccHHHHHHHHHHHHHHHhcccc-CCCCCEEEE
Confidence 9999 999999997 666544 35689999999999999999999864321 100 013689999
Q ss_pred EeecCC-CCcccHHHHHHHHhhCCCceEEEEEeecccc--ccCCCccchhHHHHhhHHHHHhcc-CCCeEEEEeCCC-Cc
Q 017070 267 LGVANP-DSLLYDDEFTKYLQDYPDNFRYDKALSREQK--NKKGGKMYVQDKIEEYSDEIFKRL-DGGAHIYFCGLK-GM 341 (378)
Q Consensus 267 ~g~r~~-~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~--~~~~~~~~v~~~i~~~~~~l~~~~-~~~~~vyvCGp~-~m 341 (378)
||+|+. .|++|.+||++|.+.++ ++++++++||++. .|.+.++||++.+.+...++++++ ..++.||+|||+ .|
T Consensus 419 fG~R~~~~D~ly~dEL~~~~~~g~-~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M 497 (539)
T 2qtl_A 419 FGCRHKDRDYLFRKELRHFLKHGI-LTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNM 497 (539)
T ss_dssp EEESCTTTCCTTHHHHHHHHHTTS-SCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHH
T ss_pred EEECCcchhhHHHHHHHHHHHhCC-CcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHH
Confidence 999999 69999999999998886 8899999999865 366789999999999888887776 467899999998 99
Q ss_pred HHHHHHHHHHHHHHcC----CCHHHHHHHHHHcCCeEEeeC
Q 017070 342 MPGIQETLKRVAEQRG----ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 342 ~~~v~~~L~~~g~~~g----~~~~~~~~~l~~~~r~~~e~~ 378 (378)
+++|.++|.++..+.| ..+++|+++|+++|||++|||
T Consensus 498 ~~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw 538 (539)
T 2qtl_A 498 AKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW 538 (539)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 9999999999987753 345779999999999999999
No 16
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=8.2e-38 Score=307.51 Aligned_cols=268 Identities=27% Similarity=0.430 Sum_probs=216.4
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCC------------------------------
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENP------------------------------ 143 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~------------------------------ 143 (378)
..+.++|+++++|++.++..++++|.|+.+..+.|.||.++.|.+.+...
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~p 84 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLP 84 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECCTTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC---------
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECCCCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCCccccCC
Confidence 46899999999999988888999999999888999999999987653210
Q ss_pred --------------------C----------------------------------CCC----------------------
Q 017070 144 --------------------K----------------------------------KPG---------------------- 147 (378)
Q Consensus 144 --------------------~----------------------------------~~g---------------------- 147 (378)
. .+.
T Consensus 85 ~~~~~tl~~~l~~~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~ldvL~~fps~~~p~~~~l~ 164 (393)
T 4dql_A 85 LAKTVSVEELLQYVELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKEQVLAKRLTMLELLEKYPACEMKFSEFIA 164 (393)
T ss_dssp --CCEEHHHHTTSBCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSHHHHHHHTTTTTCBHHHHHHHCTTCCCCHHHHHH
T ss_pred CCCcEEHHHHHHhccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCchHHHHHHhccCCCHHHHHHhCCCCCCCHHHHHH
Confidence 0 000
Q ss_pred --CCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEE--EEeeCCCCCCCCC
Q 017070 148 --NPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVL--ITGPSGKIMLLPE 223 (378)
Q Consensus 148 --~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~--v~GP~G~~~~~~~ 223 (378)
.+..+|+|||+|+|.. +++.++|+|+.+.+..+.... ...|.+|+||+++++|++|. |.||+|.|.+..
T Consensus 165 ~lp~l~~R~YSIsSsp~~---~~~~i~l~v~vv~~~~~~g~~---~~~G~~S~~L~~l~~Gd~v~v~v~~P~g~F~lp~- 237 (393)
T 4dql_A 165 LLPSIRPRYYSISSSPRV---DEKQASITVSVVSGEAWSGYG---EYKGIASNYLAELQEGDTITCFISTPQSEFTLPK- 237 (393)
T ss_dssp TSCBCCCEEEECCSCTTT---CTTEEEEEEECCEEECTTSSS---EEECHHHHHHHHCCTTCEEEEEEECCSSCCCCCS-
T ss_pred hCCCCcceeeeccccccc---cCceEEEEEEEEecccCCCCc---ccCCccchhHHhCCCcCEEEEEEEcCCCCcccCc-
Confidence 1357899999999974 247899999987443321110 13499999999999999988 789999988765
Q ss_pred CCCCCcEEEEecCCcchhhHHHHHHHHh---ccCCCcccCCeEEEEEeecC-CCCcccHHHHHHHHhhCCCceEEEEEee
Q 017070 224 DNPNATHIMIATGTGIAPFRGYLRRMFM---ESVPTYKFGGLAWLFLGVAN-PDSLLYDDEFTKYLQDYPDNFRYDKALS 299 (378)
Q Consensus 224 ~~~~~~vv~IAgGtGiaP~~sil~~~~~---~~~~~~~~~~~v~L~~g~r~-~~~~~~~del~~l~~~~~~~~~~~~~~S 299 (378)
+...|+||||+|||||||++|+++... .+.. .++++||||+|+ .++++|.+||++|.+.. ++++++++|
T Consensus 238 -~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~----~~~v~L~~G~R~~~~d~ly~~el~~~~~~~--~l~l~~a~S 310 (393)
T 4dql_A 238 -DPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQS----LGEAHLYFGCRSPHEDYLYQEELENAQSEG--IITLHTAFS 310 (393)
T ss_dssp -STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCC----CCCEEEEEEESCTTTCCTTHHHHHHHHHTT--SCEEEEEES
T ss_pred -cCCCCeEEEccCceechHHHHHHHHHHHHhcCCC----CCCEEEEEEECCcchhhHHHHHHHHHHhCC--CeEEEEEEe
Confidence 356899999999999999999998532 2211 357999999999 47999999999998763 899999999
Q ss_pred ccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCC-CcHHHHHHHHHHHHHHc-C---CCHHHHHHHHHHcCCeE
Q 017070 300 REQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLK-GMMPGIQETLKRVAEQR-G---ESWDQKLSQLKKNKQWH 374 (378)
Q Consensus 300 r~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~-g---~~~~~~~~~l~~~~r~~ 374 (378)
|++.. .++||++++.+..+++++.+..++.||+|||. .|.++|+++|.++..++ | ..+++++++|+++|||+
T Consensus 311 r~~~~---~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~ 387 (393)
T 4dql_A 311 RMPNQ---PKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYA 387 (393)
T ss_dssp SCTTS---CCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCC---CCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 96432 57899999998888887777788999999985 67779999999997765 4 44678999999999999
Q ss_pred EeeC
Q 017070 375 VEVY 378 (378)
Q Consensus 375 ~e~~ 378 (378)
+|||
T Consensus 388 ~dv~ 391 (393)
T 4dql_A 388 KDVW 391 (393)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9998
No 17
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=6.4e-37 Score=305.58 Aligned_cols=272 Identities=24% Similarity=0.445 Sum_probs=221.4
Q ss_pred CCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCC-----------------------
Q 017070 88 NLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP----------------------- 143 (378)
Q Consensus 88 ~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~----------------------- 143 (378)
..+..+.++.|+|+.+++|++. ...++++|.|+.++ .+.|.||.++.|.+.+...
T Consensus 55 ~~~~~~~p~~a~v~~n~~Lt~~-~~r~~~hie~dl~~s~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~ 133 (458)
T 3qfs_A 55 PPFDAKNPFLAAVTTNRKLNQG-TERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLD 133 (458)
T ss_dssp SCCCSSSCEEEEEEEEEECCSS-SSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESS
T ss_pred CCCCCCCCEEEEEEEEEEcCCC-CCCCEEEEEEEeCCCCcccCCCCEEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCC
Confidence 3455678899999999999984 67899999999865 6999999999997753210
Q ss_pred -----------------------C------------------------------CC---------------C--------
Q 017070 144 -----------------------K------------------------------KP---------------G-------- 147 (378)
Q Consensus 144 -----------------------~------------------------------~~---------------g-------- 147 (378)
+ .. .
T Consensus 134 ~~~~~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~ 213 (458)
T 3qfs_A 134 EESNKKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQ 213 (458)
T ss_dssp TTCSCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHH
T ss_pred cccccCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHHcCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHH
Confidence 0 00 0
Q ss_pred ----------------CCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCC----
Q 017070 148 ----------------NPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGD---- 207 (378)
Q Consensus 148 ----------------~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd---- 207 (378)
.+..+|+|||+|+|.. +++.++|+|+.+.|..+ .+. .+.|.+|+||+++.+|+
T Consensus 214 ~fps~~~p~~~ll~~lp~l~pR~YSIsSsp~~---~~~~i~ltV~vv~~~~~-~~r---~~~G~~S~~L~~l~~gg~~~~ 286 (458)
T 3qfs_A 214 DCPSLRPPIDHLCELLPRLQARYYSIASSSKV---HPNSVHICAVVVEYETK-AGR---INKGVATNWLRAKEPVGENGG 286 (458)
T ss_dssp HSTTBCCCHHHHHHHSCBCCCEEEECCSCTTT---CTTEEEEEEECCEEECT-TSC---EEECHHHHHHHTCCSSCSSCC
T ss_pred hCCccCCCHHHHHhhCCCCcceeEeeccCccc---CCCEEEEEEEEEEecCC-CCC---CCCCchhHHHHhhccCCccCC
Confidence 2568999999999864 24789999987655432 222 27899999999977655
Q ss_pred --EEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHh---ccCCCcccCCeEEEEEeecCC-CCcccHHHH
Q 017070 208 --KVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFM---ESVPTYKFGGLAWLFLGVANP-DSLLYDDEF 281 (378)
Q Consensus 208 --~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~---~~~~~~~~~~~v~L~~g~r~~-~~~~~~del 281 (378)
+|.|.+|.|.|.+.. +...|+||||+|||||||++|++++.. .+.. .++++||||+|+. +|++|.+||
T Consensus 287 ~~~v~v~~p~g~F~lp~--~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~----~~~~~Lf~G~R~~~~D~ly~dEl 360 (458)
T 3qfs_A 287 RALVPMFVRKSQFRLPF--KATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKE----VGETLLYYGCRRSDEDYLYREEL 360 (458)
T ss_dssp CCEEEEEEECCSCCCCS--STTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCC----CCCEEEEEEESCTTTSCTTHHHH
T ss_pred ceEEEEEecCCCcccCC--CCCCceEEEcCCcchhhHHHHHHHHHHHHhcCCC----CCCEEEEEEeCCchHhhhHHHHH
Confidence 699999999887765 357899999999999999999998532 2211 2679999999996 799999999
Q ss_pred HHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCC-CcHHHHHHHHHHHHHHcC---
Q 017070 282 TKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLK-GMMPGIQETLKRVAEQRG--- 357 (378)
Q Consensus 282 ~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~g--- 357 (378)
++|.+++. .+++++++||++. .++||++++.+..+++++++..++.||+|||+ .|+++|.++|.++..+.|
T Consensus 361 ~~l~~~g~-l~~l~~a~SRd~~----~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~ 435 (458)
T 3qfs_A 361 AQFHRDGA-LTQLNVAFSREQS----HKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAME 435 (458)
T ss_dssp HHHHHHTS-SSEEEEEETTSSS----SCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCC-CCEEEEEEECCCC----CcccHhHHHHHhHHHHHHHhcCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999875 6699999999853 57999999998888887777678999999996 799999999999988866
Q ss_pred -CCHHHHHHHHHHcCCeEEeeC
Q 017070 358 -ESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 358 -~~~~~~~~~l~~~~r~~~e~~ 378 (378)
..+++|+++|+++|||++|||
T Consensus 436 ~~~A~~~~~~l~~~~RY~~Dvw 457 (458)
T 3qfs_A 436 HAQAVDYIKKLMTKGRYSLDVW 457 (458)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEec
Confidence 457789999999999999999
No 18
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=5.4e-37 Score=305.74 Aligned_cols=277 Identities=26% Similarity=0.422 Sum_probs=218.9
Q ss_pred CCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC--CccccCCcEEEEeCCCCC--------------------------
Q 017070 91 KPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGEN-------------------------- 142 (378)
Q Consensus 91 ~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~~~~~-------------------------- 142 (378)
..+.++.++|+++++|++..+..++++|.|+..+ .+.|.||.++.|.+.+..
T Consensus 26 ~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~~~ 105 (435)
T 1f20_A 26 HKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLE 105 (435)
T ss_dssp HTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEEE
T ss_pred ccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEeccc
Confidence 4457799999999999998888899999999854 589999999998765321
Q ss_pred -------------------C-----------------C-----------------------CCC----------------
Q 017070 143 -------------------P-----------------K-----------------------KPG---------------- 147 (378)
Q Consensus 143 -------------------~-----------------~-----------------------~~g---------------- 147 (378)
+ . ..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~i~ 185 (435)
T 1f20_A 106 ERNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGKNPTMV 185 (435)
T ss_dssp EESSSTTCEEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTCSHHHHHHHHHHCCCHH
T ss_pred cccCCCCccccccccCCCCCccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhcCHHHHHHHHhccCCCHH
Confidence 0 0 000
Q ss_pred --------------------CCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCC
Q 017070 148 --------------------NPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGD 207 (378)
Q Consensus 148 --------------------~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd 207 (378)
.+..+|+|||+|+|.. +++.++|+|+.+.|..+. + .+..+.|.+|+||+++++|+
T Consensus 186 ~vl~~fps~~~p~~~l~~~lp~l~~R~YSIsSsp~~---~~~~i~l~v~vv~~~~~~-g-~~~~~~G~~S~~L~~l~~Gd 260 (435)
T 1f20_A 186 EVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDM---YPDEVHLTVAIVSYHTRD-G-EGPVHHGVCSSWLNRIQADD 260 (435)
T ss_dssp HHHHHSTTBCBCHHHHHHHSCBCCCEEEECCSCTTT---STTEEEEEEECCEEECGG-G-TSCEEECHHHHHHTTCCTTC
T ss_pred HHHHhCCcCCCCHHHHHHhCCCCCCccccccCCccc---CCCeEEEEEEEEEEecCC-C-CCcccCCccchhHhhCCCCC
Confidence 1236799999999864 237899999876554331 0 00114599999999999999
Q ss_pred EEEEEe-eCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCC-CcccHHHHHHHH
Q 017070 208 KVLITG-PSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPD-SLLYDDEFTKYL 285 (378)
Q Consensus 208 ~v~v~G-P~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~-~~~~~del~~l~ 285 (378)
+|.|.| |.|.|.+.. +..+++||||||||||||++|++++...........++++||||+|+.+ |++|.+||++|.
T Consensus 261 ~v~v~~~~~g~F~lp~--~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~ 338 (435)
T 1f20_A 261 VVPCFVRGAPSFHLPR--NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAK 338 (435)
T ss_dssp EEEEEEECCTTSSCCS--CTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHH
T ss_pred EEEEEEecCCCccCCC--CCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHH
Confidence 999999 566887754 3568999999999999999999988763100000136899999999997 789999999999
Q ss_pred hhCCCceEEEEEeeccccccCCCccchhHHHHhh-HHHHHhcc-CCCeEEEEeCCCCcHHHHHHHHHHHHHHcC----CC
Q 017070 286 QDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEY-SDEIFKRL-DGGAHIYFCGLKGMMPGIQETLKRVAEQRG----ES 359 (378)
Q Consensus 286 ~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~-~~~l~~~~-~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g----~~ 359 (378)
+.++ ++++++++||++.. .++|+++++.+. .++++..+ +.+..||+|||++|+++|.++|.+++.+.| ..
T Consensus 339 ~~~~-~~~l~~a~Sr~~~~---~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i~~~~~~~~~~~ 414 (435)
T 1f20_A 339 NKGV-FRELYTAYSREPDR---PKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEED 414 (435)
T ss_dssp HTTS-EEEEEEEESSCTTS---CCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HcCC-ccEEEEEECCCCCC---CCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCChhHHHHHHHHHHHHHHHcCCCCHHH
Confidence 8876 78999999998643 268999999876 56666555 467899999999999999999999998876 45
Q ss_pred HHHHHHHHHHcCCeEEeeC
Q 017070 360 WDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 360 ~~~~~~~l~~~~r~~~e~~ 378 (378)
+++++++|+++|||++|||
T Consensus 415 a~~~~~~l~~~~RY~~Dv~ 433 (435)
T 1f20_A 415 AGVFISRLRDDNRYHEDIF 433 (435)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEec
Confidence 7789999999999999999
No 19
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=100.00 E-value=3.7e-37 Score=289.18 Aligned_cols=241 Identities=18% Similarity=0.232 Sum_probs=188.6
Q ss_pred CCCCCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC---CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCC
Q 017070 88 NLYKPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG---NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGD 164 (378)
Q Consensus 88 ~~~~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~ 164 (378)
+...+...+.++|++++.++++ +++|+|..+. .+.|.||||+.|.++..+ ....|+|||+|.|.+
T Consensus 9 ~~~~~~~~~~~~V~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g------~~~~R~ySi~s~~~~- 76 (275)
T 1umk_A 9 TLESPDIKYPLRLIDREIISHD-----TRRFRFALPSPQHILGLPVGQHIYLSARIDG------NLVVRPYTPISSDDD- 76 (275)
T ss_dssp SCCCTTCCEEEEEEEEEECSSS-----EEEEEEECSSTTCBCCCCTTCEEEEEEEETT------EEEEEEECCSSCTTC-
T ss_pred cccCCCccEEEEEEEEEEcCCC-----eEEEEEEcCCcccccCCCCCcEEEEEEeeCC------cEEEeccccCCccCC-
Confidence 3445667899999999999998 9999998764 367999999999875322 147899999998864
Q ss_pred CCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCCCCC-------CC-------CCCCcE
Q 017070 165 SFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIMLLP-------ED-------NPNATH 230 (378)
Q Consensus 165 ~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~-------~~-------~~~~~v 230 (378)
.+.++|+||.+.+. ...+ ..++|.+|+||+++++||+|.|.||+|.|.+.+ .. ...+++
T Consensus 77 ---~~~~~l~vk~~~~~-~~~~---~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~ 149 (275)
T 1umk_A 77 ---KGFVDLVIKVYFKD-THPK---FPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSV 149 (275)
T ss_dssp ---CSEEEEEEECCCSS-SBTT---BTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEE
T ss_pred ---CCeEEEEEEEeccC-cccc---cCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceE
Confidence 37999999975111 1001 114699999999999999999999999985421 00 135789
Q ss_pred EEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCcc
Q 017070 231 IMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKM 310 (378)
Q Consensus 231 v~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~ 310 (378)
|||||||||||+++|++++...... .++++|+|++|+.++++|.+||++|.+++++++++++++++++.+|.+..|
T Consensus 150 vliagGtGIaP~~~~l~~l~~~~~~----~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g 225 (275)
T 1umk_A 150 GMIAGGTGITPMLQVIRAIMKDPDD----HTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQG 225 (275)
T ss_dssp EEEEEGGGHHHHHHHHHHHHTCTTC----CCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEES
T ss_pred EEEecCccHhHHHHHHHHHHhCCCC----CcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccC
Confidence 9999999999999999998765221 368999999999999999999999999887679999999998778888888
Q ss_pred chhHHHHhhHHHHHhccCCCeEEEEeCCCCcHH-HHHHHHHHHHH
Q 017070 311 YVQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMP-GIQETLKRVAE 354 (378)
Q Consensus 311 ~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~-~v~~~L~~~g~ 354 (378)
++++.+.+ +++.....+..||+|||++|++ ++++.|.+.|.
T Consensus 226 ~v~~~~l~---~~l~~~~~~~~vyvCGp~~m~~~~v~~~L~~~G~ 267 (275)
T 1umk_A 226 FVNEEMIR---DHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGH 267 (275)
T ss_dssp SCCHHHHH---HHSCCGGGCCEEEEESCHHHHHHTTHHHHHHHTC
T ss_pred ccCHHHHH---HhcCCCCCCeEEEEECCHHHHHHHHHHHHHHcCC
Confidence 98875322 1111112467899999999999 89988876543
No 20
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=100.00 E-value=1.9e-38 Score=297.46 Aligned_cols=239 Identities=22% Similarity=0.223 Sum_probs=190.0
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
..+.++|+++++++++ +++|+|+.+..+.|+||||+.|.++..+. ...|+|||+|.|.+ +.++|
T Consensus 18 ~~~~~~V~~~~~~~~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~------~~~r~ySi~s~~~~-----~~~~~ 81 (271)
T 4fk8_A 18 KFDTATVLSVHHWTDT-----LFSFTCTRDQALRFNNGEFTMVGLEVDGK------PLTRAYSIVSPNYE-----EHLEF 81 (271)
T ss_dssp CEEEEEEEEEEEEETT-----EEEEEECCCTTCCCCTTCEEEEEEEETTE------EEEEEEECCSCTTS-----SSEEE
T ss_pred cceeEEEEEEEEcCCC-----EEEEEEEcCCCCCcCCCCEEEEEccCCCc------eeeeeEeccCCCCC-----CcEEE
Confidence 4689999999999998 99999998888899999999999874321 36899999998854 67999
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEE-eeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhc
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLIT-GPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFME 252 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~ 252 (378)
+|+.+ ++|.+|++|+++++||+|.|. ||+|.|++.+. ...+++|||||||||||+++|++++...
T Consensus 82 ~v~~~-------------~~G~~s~~l~~l~~Gd~v~v~~gP~G~~~~~~~-~~~~~~vliagG~GitP~~~~l~~l~~~ 147 (271)
T 4fk8_A 82 FSIKV-------------QNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNL-LPGKTLWMLSTGTGLAPFMSIIRDPDIY 147 (271)
T ss_dssp EEECC-------------TTCTTHHHHTTCCTTCEEEEESCCBCSCCGGGB-CCCSEEEEEECGGGGHHHHHHTTCHHHH
T ss_pred EEEEE-------------CCCchhhHHhcCCCCCEEEEecCCCcceecCCc-CCCCeEEEEECCEEHHHHHHHHHHHHhc
Confidence 99987 789999999999999999999 99999987642 1468999999999999999999998765
Q ss_pred cCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCC-------CceEEEEEeeccccccCCCccchhHHHHhh-HHHHH
Q 017070 253 SVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYP-------DNFRYDKALSREQKNKKGGKMYVQDKIEEY-SDEIF 324 (378)
Q Consensus 253 ~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~-------~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~-~~~l~ 324 (378)
+. .++++|+|++|+.++++|.++|+++.++++ .+++++.++++++. +..|++++.+.+. +.+..
T Consensus 148 ~~-----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~~l~~~~ 219 (271)
T 4fk8_A 148 ER-----FDKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASGKLFTDL 219 (271)
T ss_dssp HH-----CSEEEEEECCCSHHHHHHHHHHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHHSHHHHHT
T ss_pred CC-----CCCEEEEEecCCHHHHhHHHHHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhcchhhhhc
Confidence 42 268999999999999999999999988775 25888888888754 3467787766441 11111
Q ss_pred h---ccCCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 325 K---RLDGGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 325 ~---~~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
. .......||+|||++|++++++.|.+.|.... ++...|+|+.|.|
T Consensus 220 ~~~~~~~~~~~v~vCGp~~m~~~v~~~l~~~gv~~~--------~i~~~~~~~~E~y 268 (271)
T 4fk8_A 220 DMPPFSPEQDRVMLCGSTAMLKDTTELLKKAGLVEG--------KNSAPGHYVIERA 268 (271)
T ss_dssp TCCCCCTTTEEEEEEECHHHHHHHHHHHHHTTCCBC--------BTTBCBSEEEEES
T ss_pred ccccCCCCCCEEEEECCHHHHHHHHHHHHHcCCchh--------hcCCCCcEEEEEe
Confidence 1 11367899999999999999999987655433 3445889999987
No 21
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=100.00 E-value=7.6e-37 Score=286.90 Aligned_cols=240 Identities=18% Similarity=0.223 Sum_probs=190.2
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
..+.++|++++.++++ +++|+|+.++.+.|.||||+.|.+++.+ .+...|+|||+|.|.+ +.++|
T Consensus 15 ~~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~pGQ~v~l~~~~~~-----g~~~~R~ySi~s~~~~-----~~~~l 79 (272)
T 2bgi_A 15 LPDAQTVTSVRHWTDT-----LFSFRVTRPQTLRFRSGEFVMIGLLDDN-----GKPIMRAYSIASPAWD-----EELEF 79 (272)
T ss_dssp -CEEEEEEEEEEEETT-----EEEEEEECCTTCCCCTTCEEEEEEECTT-----SCEEEEEEECCSCTTC-----SEEEE
T ss_pred EeEEEEEEEEEEcCCC-----EEEEEEeCCCCCccCCCCEEEEEeccCC-----CCeeeeeeeeccCCCC-----CeEEE
Confidence 3478999999999998 9999999887788999999999987421 1147899999999863 78999
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEE-eeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhc
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLIT-GPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFME 252 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~ 252 (378)
+|+.+ ++|.+|+||+++++||+|.|. ||+|.|.+... ...+++|||||||||||+++|++++...
T Consensus 80 ~v~~~-------------~~G~~s~~l~~l~~Gd~v~v~~gP~G~f~~~~~-~~~~~~vliagG~GiaP~~~~l~~l~~~ 145 (272)
T 2bgi_A 80 YSIKV-------------PDGPLTSRLQHIKVGEQIILRPKPVGTLVIDAL-LPGKRLWFLATGTGIAPFASLMREPEAY 145 (272)
T ss_dssp EEECC-------------TTCTTHHHHTTCCTTCEEEEEEEEECSCCGGGB-CCCSEEEEEEEGGGGHHHHHHTTCGGGG
T ss_pred EEEEc-------------cCCCchhHHHhCCCCCEEEEeeCCCCccccccc-ccCCeEEEEeecccHHHHHHHHHHHHhc
Confidence 99987 789999999999999999999 99999877542 1258999999999999999999987654
Q ss_pred cCCCcccCCeEEEEEeecCCCCcccHHHHH-HHHh-----hC-CCceEEEEEeeccccccCCCccchhHHHHhh-HHHHH
Q 017070 253 SVPTYKFGGLAWLFLGVANPDSLLYDDEFT-KYLQ-----DY-PDNFRYDKALSREQKNKKGGKMYVQDKIEEY-SDEIF 324 (378)
Q Consensus 253 ~~~~~~~~~~v~L~~g~r~~~~~~~~del~-~l~~-----~~-~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~-~~~l~ 324 (378)
+. .++++|+|++|+.++++|.++|+ +|.+ ++ +.+|++++++|+++ .+..|++++.+.+. +.+..
T Consensus 146 ~~-----~~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~ 217 (272)
T 2bgi_A 146 EK-----FDEVIMMHACRTVAELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREE---FHHMGRITDNLASGKVFEDL 217 (272)
T ss_dssp TS-----CSEEEEEEEESSSGGGHHHHHHHHHHHHCTTTTTTSTTTEEEEEEESSSC---CSSBCCHHHHHHSCHHHHHH
T ss_pred CC-----CCcEEEEEEeCCHHHhhHHHHHHHHHHhcchhhcccCCcEEEEEEecCCc---cccCceechHHHhhhHhhhc
Confidence 32 26899999999999999999999 9987 54 34899999999873 23567888876642 12221
Q ss_pred hc--c-CCCeEEEEeCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCeEEeeC
Q 017070 325 KR--L-DGGAHIYFCGLKGMMPGIQETLKRVAEQRGESWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 325 ~~--~-~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l~~~~r~~~e~~ 378 (378)
.. . .....||+|||++|++++++.|.+. |++.+ ++...++|+.|.|
T Consensus 218 ~~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~----G~~~~----~i~~~~~i~~E~f 266 (272)
T 2bgi_A 218 GIAPMNPETDRAMVCGSLAFNVDVMKVLESY----GLREG----ANSEPREFVVEKA 266 (272)
T ss_dssp TCCCCCTTTEEEEEEECHHHHHHHHHHHHTT----TCCBC----BTTBCBSEEEEES
T ss_pred ccccCCCCCcEEEEECCHHHHHHHHHHHHHc----CCChH----HcCCccceEeeee
Confidence 11 1 2568999999999999999888754 43322 2234578888865
No 22
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=1.4e-36 Score=317.88 Aligned_cols=277 Identities=30% Similarity=0.491 Sum_probs=218.9
Q ss_pred CCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCC----------------------C----
Q 017070 92 PKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP----------------------K---- 144 (378)
Q Consensus 92 ~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~----------------------~---- 144 (378)
...++.++|+.+++|+. .+..++++|.|+..+ .+.|.||.++.|.+.+... +
T Consensus 256 ~~~p~~a~v~~~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~ 334 (682)
T 2bpo_A 256 LSQPYIAPIVKSRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDPTVK 334 (682)
T ss_dssp TTBCCCEEEEEEEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSSTTCC
T ss_pred CCCceEEEEEEEEEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCcccC
Confidence 34678899999999998 577889999999864 6899999999997765310 0
Q ss_pred ------------------C------------------------------------------------------C------
Q 017070 145 ------------------K------------------------------------------------------P------ 146 (378)
Q Consensus 145 ------------------~------------------------------------------------------~------ 146 (378)
. .
T Consensus 335 ~p~p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~ 414 (682)
T 2bpo_A 335 VPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSKDKDQFAVEITSKYFNIADALKYLSDGAKWDT 414 (682)
T ss_dssp CSSCSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHTTCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTT
T ss_pred CCCCCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhccCHHHHHHHHhcCCCCHHHHHHhccCcccccC
Confidence 0 0
Q ss_pred ---------CCCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCC------------
Q 017070 147 ---------GNPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKP------------ 205 (378)
Q Consensus 147 ---------g~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~------------ 205 (378)
-.+..+|+|||+|+|.. +++.++|+|+.+.|..+.. .+...+.|.+|+||+++++
T Consensus 415 ~p~~~l~~~lp~l~~R~YSIsSsp~~---~~~~i~ltv~Vv~~~~~~~-~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~ 490 (682)
T 2bpo_A 415 VPMQFLVESVPQMTPRYYSISSSSLS---EKQTVHVTSIVENFPNPEL-PDAPPVVGVTTNLLRNIQLAQNNVNIAETNL 490 (682)
T ss_dssp SCHHHHHHHSCBCCCEEEEBCSCTTT---CTTEEEEEEECCEECCSSC-TTSCCEECHHHHHHHHHHHHHTTCCTTTSCC
T ss_pred CCHHHHHHhCcccccccccccCCccc---CCCeEEEEEEEEEEecCcc-cCCcccCccccHHHHhccccccccccccccc
Confidence 01246799999999964 2478999998765544421 0011267999999998776
Q ss_pred CCEEEEEeeCCCC-------------CCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccC------CCcccCCeEEEE
Q 017070 206 GDKVLITGPSGKI-------------MLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESV------PTYKFGGLAWLF 266 (378)
Q Consensus 206 Gd~v~v~GP~G~~-------------~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~------~~~~~~~~v~L~ 266 (378)
|++|.|.||+|.| |..+. ++..|+||||+|||||||++|++++..... .. +..++++||
T Consensus 491 G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~-~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g-~~~~~~~L~ 568 (682)
T 2bpo_A 491 PVHYDLNGPRKLFANYKLPVHVRRSNFRLPS-NPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNN-VSLGKHILF 568 (682)
T ss_dssp CCCCCSSCGGGTTTTTEECEEEECCSCCCCS-STTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----C-CCCCCEEEE
T ss_pred ccceeeccCcCcccCceEEEEEecCcccCCC-CCCCCEEEEecCcChHHHHHHHHHHHHhhccccccccc-CCcCCEEEE
Confidence 9999999999997 22332 346899999999999999999998875432 10 113689999
Q ss_pred EeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCC-CCcHHHH
Q 017070 267 LGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGL-KGMMPGI 345 (378)
Q Consensus 267 ~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp-~~m~~~v 345 (378)
||+|+.+|++|.+||++|+.+.+.++++++++||++. +.++|||+++.+..++++++++.++.||+||| ++|+++|
T Consensus 569 fG~R~~~D~ly~dEl~~~~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V 645 (682)
T 2bpo_A 569 YGSRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGV 645 (682)
T ss_dssp EEESSSSSCTTTTTHHHHHHHHGGGEEEEEEESCCTT---SCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHH
T ss_pred EecCChhhhhhHHHHHHHHHhcCCceEEEEEECCCCC---CCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHH
Confidence 9999999999999999995443338999999999543 46899999999888888777767889999999 7999999
Q ss_pred HHHHHHHHHHcC-C---CHHHHHHHHHHcCCeEEeeC
Q 017070 346 QETLKRVAEQRG-E---SWDQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 346 ~~~L~~~g~~~g-~---~~~~~~~~l~~~~r~~~e~~ 378 (378)
.++|.++..+.| + .+++++++|+++|||++|||
T Consensus 646 ~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 646 STALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 999999988765 3 45789999999999999999
No 23
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=2.2e-36 Score=278.61 Aligned_cols=218 Identities=17% Similarity=0.265 Sum_probs=176.4
Q ss_pred CeEEEEeEEEEecCCCCCCceEEEEeeCCC---CccccCCcEEEEeCCCCCCCCCCCCC-CceecccccCCCCCCCCCCE
Q 017070 95 PYTATIVSVERVVGAKAPGETCHIVIDHGG---NVPYWEGQSYGVIPPGENPKKPGNPH-NVRLYSIASTRYGDSFDGKT 170 (378)
Q Consensus 95 ~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~g~~~-~~R~ySias~p~~~~~~~~~ 170 (378)
..+++|++++.++++ +++|+|+.++ .+.|+||||+.|.++..+ .+. ..|+|||+|.|.+ +.
T Consensus 3 ~~~~~V~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~-----~~~~~~R~ySi~s~~~~-----~~ 67 (243)
T 4eh1_A 3 GRTFVVREKQVESAY-----VTSFVLVPADGGAVLDYQPGQYIGIEVTPEG-----SDYREIRQYSLSHASNG-----RE 67 (243)
T ss_dssp CEEEEEEEEEECSSS-----EEEEEEEESSCSCCCCCCTTCEEEEEECCSS-----CSSCEEEEEEBCSCCCS-----SC
T ss_pred cEEEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCcCCCCEEEEEEecCC-----CccccceeeEeccCCCC-----Ce
Confidence 467999999999998 9999999865 267999999999987532 112 5799999998854 67
Q ss_pred EEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHH
Q 017070 171 ASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRM 249 (378)
Q Consensus 171 l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~ 249 (378)
++|+||.... ...++|.+|+||++ +++|++|.|.||+|.|++.. ..+++|||||||||||+++|++++
T Consensus 68 ~~i~vk~~~~--------~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~~~---~~~~~vliagGtGitp~~~~l~~l 136 (243)
T 4eh1_A 68 YRISVKREGV--------GSDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYVE---RERPVVLISAGVGATPMQAILHTL 136 (243)
T ss_dssp EEEEEECTTT--------TSSSCCHHHHHHHHHCCTTCEEEEEEEECSCCCCC---CSSCEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEEEeec--------CCCCCCeehhHHHhcCCCCCEEEEEccCcccCcCC---CCCCEEEEEccccHHHHHHHHHHH
Confidence 9999997410 01156999999985 99999999999999998763 468999999999999999999999
Q ss_pred HhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCC
Q 017070 250 FMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDG 329 (378)
Q Consensus 250 ~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~ 329 (378)
...+.. + ++|+|++|+.++++|.++|++|.+++ +++++++++++...|. ..|+++..+. ...+.
T Consensus 137 ~~~~~~-----~-v~l~~~~r~~~~~~~~~el~~l~~~~--~~~~~~~~s~~~~~~~-~~g~~~~~~~-------~~~~~ 200 (243)
T 4eh1_A 137 AKQNKS-----G-VTYLYACNSAKEHTFAQETAQLIAQQ--GWMQQVWYRDESADDV-LQGEMQLAEL-------ILPIE 200 (243)
T ss_dssp HHTTCC-----S-EEEEEEESSGGGCTTHHHHHHHHHHH--TCEEEEEESSCCCTTC-EESSCCCTTS-------CCCTT
T ss_pred HHcCCC-----e-EEEEEEeCChhhhhHHHHHHHHHHhC--CeEEEEEEccCCCccc-ccCCccHHHe-------eccCC
Confidence 876532 4 99999999999999999999999887 7899999988765543 3455544322 11126
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHH
Q 017070 330 GAHIYFCGLKGMMPGIQETLKRVAE 354 (378)
Q Consensus 330 ~~~vyvCGp~~m~~~v~~~L~~~g~ 354 (378)
+..||+|||++|++++++.|.+.|.
T Consensus 201 ~~~vyvCGp~~m~~~v~~~l~~~g~ 225 (243)
T 4eh1_A 201 DGDFYLCGPIGFMQYVVKQLLALGV 225 (243)
T ss_dssp TCEEEEEECHHHHHHHHHHHHHHTC
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCC
Confidence 7899999999999999999986643
No 24
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=2.7e-35 Score=305.01 Aligned_cols=271 Identities=24% Similarity=0.454 Sum_probs=217.6
Q ss_pred CCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCC---------------------------
Q 017070 92 PKEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENP--------------------------- 143 (378)
Q Consensus 92 ~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~--------------------------- 143 (378)
...++.++|+.+++|+++ +..++++|.|+.++ .+.|.||.++.|.+.+...
T Consensus 219 ~~~~~~a~v~~n~~Lt~~-~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~ 297 (618)
T 3qe2_A 219 AKNPFLAAVTTNRKLNQG-TERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESN 297 (618)
T ss_dssp SSSCEEEEEEEEEECSCC-SSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTTCS
T ss_pred cCCcEEEEEEeEEEcCCC-CCCcEEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCcccc
Confidence 346799999999999975 57799999999865 5899999999997643200
Q ss_pred -------------------------C--------------------------C-------------CC------------
Q 017070 144 -------------------------K--------------------------K-------------PG------------ 147 (378)
Q Consensus 144 -------------------------~--------------------------~-------------~g------------ 147 (378)
. . +.
T Consensus 298 ~~~~~p~~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps 377 (618)
T 3qe2_A 298 KKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPS 377 (618)
T ss_dssp CCSSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTT
T ss_pred CCCCCCCceEHHHhhhhEeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCc
Confidence 0 0 00
Q ss_pred ------------CCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCC-CC-----EE
Q 017070 148 ------------NPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKP-GD-----KV 209 (378)
Q Consensus 148 ------------~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~-Gd-----~v 209 (378)
.+..+|+|||+|+|.. +++.++|+|+.+.|..+ .+. .+.|.+|+||+++.+ |+ +|
T Consensus 378 ~~~p~~~l~~~lp~l~pR~YSIsSsp~~---~~~~i~ltv~vv~~~~~-~~~---~~~G~~S~~L~~l~~~Gd~~~~~~v 450 (618)
T 3qe2_A 378 LRPPIDHLCELLPRLQARYYSIASSSKV---HPNSVHICAVVVEYETK-AGR---INKGVATNWLRAKEPVGENGGRALV 450 (618)
T ss_dssp BCCCHHHHHHHSCBCCCEEEECCSCTTT---CTTEEEEEEECCEEECT-TSC---EEECHHHHHHHTCCCC-----CCEE
T ss_pred cCCCHHHHHHhccccccceeccccCCcC---CCCEEEEEEEEEEEecC-CCC---CCCCcccHHHHhhcccCCCCcceEE
Confidence 2357899999999964 24789999987655443 222 267999999999777 88 99
Q ss_pred EEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCC-CCcccHHHHHHHHhhC
Q 017070 210 LITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANP-DSLLYDDEFTKYLQDY 288 (378)
Q Consensus 210 ~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~-~~~~~~del~~l~~~~ 288 (378)
.|.+|.|.|.+.. +...|+||||+|||||||++|++++....... ...++++||||+|+. .|++|.+||++|.+.+
T Consensus 451 ~v~~p~g~F~lp~--~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g-~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g 527 (618)
T 3qe2_A 451 PMFVRKSQFRLPF--KATTPVIMVGPGTGVAPFIGFIQERAWLRQQG-KEVGETLLYYGCRRSDEDYLYREELAQFHRDG 527 (618)
T ss_dssp EEEEECCSCCCCS--STTSCEEEECCGGGGHHHHHHHHHHHHHHHTT-CCCCCEEEEEEESCTTTSCTTHHHHHHHHHHT
T ss_pred EEEEecCcccCCC--CCCCCeEEEcCCcchhhHHHHHHHHHHHHhcC-CCCCCEEEEEecCCCccccchHHHHHHHHhcC
Confidence 9999999887765 35789999999999999999999876432110 013679999999999 5999999999999886
Q ss_pred CCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCC-CcHHHHHHHHHHHHHHcC----CCHHHH
Q 017070 289 PDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLK-GMMPGIQETLKRVAEQRG----ESWDQK 363 (378)
Q Consensus 289 ~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~g----~~~~~~ 363 (378)
. .+++++++||++. .++||++++.+..+++++++..++.||+|||+ .|+++|.++|.++..++| ..++++
T Consensus 528 ~-l~~l~~a~Srd~~----~k~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~ 602 (618)
T 3qe2_A 528 A-LTQLNVAFSREQS----HKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDY 602 (618)
T ss_dssp S-SSEEEEEETTSSS----SCCCHHHHHHHTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred C-CcEEEEEEcCCCC----CCCcHHHHHHHhHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4 5699999999863 47999999998888887766678899999996 999999999999988866 456789
Q ss_pred HHHHHHcCCeEEeeC
Q 017070 364 LSQLKKNKQWHVEVY 378 (378)
Q Consensus 364 ~~~l~~~~r~~~e~~ 378 (378)
+++|+++|||++|||
T Consensus 603 ~~~l~~~~RY~~Dv~ 617 (618)
T 3qe2_A 603 IKKLMTKGRYSLDVW 617 (618)
T ss_dssp HHHHHHTTSEEEEEE
T ss_pred HHHHHHcCCeEEeec
Confidence 999999999999998
No 25
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=100.00 E-value=4.2e-36 Score=281.08 Aligned_cols=244 Identities=16% Similarity=0.190 Sum_probs=184.0
Q ss_pred CCCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC---CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCC
Q 017070 91 KPKEPYTATIVSVERVVGAKAPGETCHIVIDHGG---NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFD 167 (378)
Q Consensus 91 ~~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~ 167 (378)
.+...+.++|++++.++++ +++|+|..+. .+.|+||||+.|.++..+ ....|+|||+|.|.+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g------~~~~R~ySi~s~~~~---- 72 (270)
T 2cnd_A 8 NPRGRIHCRLVAKKELSRD-----VRLFRFSLPSPDQVLGLPIGKHIFVCATIEG------KLCMRAYTPTSMVDE---- 72 (270)
T ss_dssp ---CCEEEEEEEEEEEETT-----EEEEEEECSSTTCCCCCCTTCEEEEEEEETT------EEEEEEECCCSCTTC----
T ss_pred CCCceEEEEEEEEEEeCCC-----eEEEEEECCCCccccCCCCCCEEEEEeeeCC------cEEEEeeccCCCccC----
Confidence 3456789999999999998 9999998765 367999999999875321 147899999998864
Q ss_pred CCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCCCC--------CCCCCCCCCcEEEEecCCcc
Q 017070 168 GKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGKIM--------LLPEDNPNATHIMIATGTGI 239 (378)
Q Consensus 168 ~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~--------~~~~~~~~~~vv~IAgGtGi 239 (378)
.+.++|+||.+. ....... ..+|.+|+||+++++||+|.|.||+|.|. +....+..+++|||||||||
T Consensus 73 ~~~~~l~vk~~~-~~~~~~~---~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGi 148 (270)
T 2cnd_A 73 IGHFDLLVKVYF-KNEHPKF---PNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGI 148 (270)
T ss_dssp CSEEEEEEECCC-SSCBTTB---TTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGH
T ss_pred CCEEEEEEEEec-cCccccc---CCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCCcccCCEEEEEeccccH
Confidence 378999999741 0000000 03599999998899999999999999843 32100135799999999999
Q ss_pred hhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeec---cccccCCCccchhHHH
Q 017070 240 APFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSR---EQKNKKGGKMYVQDKI 316 (378)
Q Consensus 240 aP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr---~~~~~~~~~~~v~~~i 316 (378)
||+++|++++...... ..++++|+|++|+.++++|.+||++|++++++++++++++++ ++.+|.+..|++++.+
T Consensus 149 aP~~~~l~~l~~~~~~---~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~ 225 (270)
T 2cnd_A 149 TPMYQIIQAVLRDQPE---DHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAV 225 (270)
T ss_dssp HHHHHHHHHHHHTTTT---CCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHH
T ss_pred HHHHHHHHHHHhcCCC---CCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHH
Confidence 9999999998865211 136899999999999999999999999988767999999988 4556777788888754
Q ss_pred HhhHHHHHhccCCCeEEEEeCCCCcHHH-HHHHHHHHHHHcCCCHHHH
Q 017070 317 EEYSDEIFKRLDGGAHIYFCGLKGMMPG-IQETLKRVAEQRGESWDQK 363 (378)
Q Consensus 317 ~~~~~~l~~~~~~~~~vyvCGp~~m~~~-v~~~L~~~g~~~g~~~~~~ 363 (378)
.+ +++........||+|||++|+++ +++.|. +.|++.+++
T Consensus 226 l~---~~l~~~~~~~~vyvCGp~~m~~~~~~~~L~----~~G~~~~~i 266 (270)
T 2cnd_A 226 LR---EHVPEGGDDTLALACGPPPMIQFAISPNLE----KMKYDMANS 266 (270)
T ss_dssp HH---HHSCCCSSSEEEEEECCHHHHHTTTHHHHH----TTTCCHHHH
T ss_pred HH---HhcCCCcCCEEEEEECCHHHHHHHHHHHHH----HcCCChhhc
Confidence 32 22222224578999999999996 577775 456766554
No 26
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=100.00 E-value=2.7e-36 Score=280.60 Aligned_cols=221 Identities=20% Similarity=0.231 Sum_probs=179.8
Q ss_pred CeEEEEeEEEEecCCCCCCceEEEEeeCCCCccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEEE
Q 017070 95 PYTATIVSVERVVGAKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASLC 174 (378)
Q Consensus 95 ~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l~ 174 (378)
.+.++|++++.++++ +++|+|+.+..+.|.||||+.|.++..+ +...|+|||+|.|.+ +.++|+
T Consensus 3 ~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~pGq~v~l~~~~~g------~~~~R~ySi~s~~~~-----~~~~~~ 66 (257)
T 2qdx_A 3 LYTERVLSVHHWNDT-----LFSFKTTRNPGLRFKTGQFVMIGLEVDG------RPLMRAYSIASPNYE-----EHLEFF 66 (257)
T ss_dssp SEEEEEEEEEEEETT-----EEEEEEECCTTCCCCTTCEEEEEEEETT------EEEEEEEECCSCTTS-----SEEEEE
T ss_pred eEEEEEEEEEEcCCC-----eEEEEEeCCCCCccCCCCEEEEEecCCC------CceeeeeEeecCCCC-----CeEEEE
Confidence 478999999999998 9999999888788999999999987422 147899999999863 689999
Q ss_pred EEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEE-eeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhcc
Q 017070 175 VRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLIT-GPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMES 253 (378)
Q Consensus 175 Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~ 253 (378)
|+.+ ++|.+|+||+++++||+|.|. ||+|.|.+... ...+++|||||||||||+++|++++...+
T Consensus 67 i~~~-------------~~G~~s~~l~~l~~Gd~v~v~~gp~G~f~~~~~-~~~~~~vliagG~GitP~~~~l~~l~~~~ 132 (257)
T 2qdx_A 67 SIKV-------------PDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDL-LPGKHLYLLSTGTGMAPFLSVIQDPETYE 132 (257)
T ss_dssp EECC-------------TTCTTHHHHTTCCTTCEEEECSCCBCSCCGGGB-CSCSEEEEEEEGGGGHHHHHHTTCHHHHH
T ss_pred EEEe-------------CCCcchhHHHhCCCCCEEEEecCCCCCccCCcc-cCCCeEEEEEeceEHHHHHHHHHHHHhcC
Confidence 9987 789999999999999999999 99999877542 12589999999999999999999876543
Q ss_pred CCCcccCCeEEEEEeecCCCCcccHHHHH-HHHh-----hC-CCceEEEEEeeccccccCCCccchhHHHHhh-HHHHHh
Q 017070 254 VPTYKFGGLAWLFLGVANPDSLLYDDEFT-KYLQ-----DY-PDNFRYDKALSREQKNKKGGKMYVQDKIEEY-SDEIFK 325 (378)
Q Consensus 254 ~~~~~~~~~v~L~~g~r~~~~~~~~del~-~l~~-----~~-~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~-~~~l~~ 325 (378)
. .++++|+|++|+.++++|.++|+ +|.+ ++ +.+|++++++|+++. +..|++++.+.+. +.+.+.
T Consensus 133 ~-----~~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~---~~~g~v~~~l~~~~l~~~~~ 204 (257)
T 2qdx_A 133 R-----YEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPF---RNQGRQTDLMRSGKLFEDIG 204 (257)
T ss_dssp H-----CSEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSCC---SSBSCHHHHHHHSHHHHHHT
T ss_pred C-----CCeEEEEEEcCCHHHhHhHHHHHHHHHhchhhhccCCCcEEEEEEecCCCc---ccCceechhhhhhhHHHhcc
Confidence 2 25799999999999999999999 8876 33 228999999998742 3467888776542 222221
Q ss_pred c--c-CCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 326 R--L-DGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 326 ~--~-~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
. + ..+..||+|||++|++++++.|.+.|
T Consensus 205 ~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G 235 (257)
T 2qdx_A 205 LPPMNPQDDRAMICGSPSMLEETSAVLDSFG 235 (257)
T ss_dssp CCCCCTTTEEEEEEECHHHHHHHHHHHHHTT
T ss_pred cccCCcCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 1 1 25789999999999999999887654
No 27
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=100.00 E-value=1e-35 Score=293.57 Aligned_cols=219 Identities=21% Similarity=0.295 Sum_probs=178.2
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCC--C-ccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGG--N-VPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKT 170 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~--~-~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~ 170 (378)
....++|+++++++++ +++|+|+.++ . ..|+||||+.|.++..+. .....|+|||+|.|.+ +.
T Consensus 151 ~~~~~~V~~~~~~s~~-----i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~----~~~~~R~YSi~s~p~~-----~~ 216 (396)
T 1gvh_A 151 GTRDFRIVAKTPRSAL-----ITSFELEPVDGGAVAEYRPGQYLGVWLKPEGF----PHQEIRQYSLTRKPDG-----KG 216 (396)
T ss_dssp SEEEEEEEEEEECSSS-----EEEEEEEETTCCCCCCCCTTCEEEEEECCTTC----SSCEEEEEECCSCCCS-----SC
T ss_pred CcEEEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCCCCCCeEEEEecCCCC----ccceeecceeccCCCC-----Ce
Confidence 4578999999999998 9999999864 2 579999999999874210 1136899999999863 68
Q ss_pred EEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHH
Q 017070 171 ASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRM 249 (378)
Q Consensus 171 l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~ 249 (378)
++|+||+. ++|.+|+||++ +++||+|.|.||+|.|.+.. +..+++|||||||||||+++|++++
T Consensus 217 ~~i~Vk~~-------------~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~--~~~~~~vlIagGtGitP~~s~l~~l 281 (396)
T 1gvh_A 217 YRIAVKRE-------------EGGQVSNWLHNHANVGDVVKLVAPAGDFFMAV--ADDTPVTLISAGVGQTPMLAMLDTL 281 (396)
T ss_dssp EEEEEECC-------------TTCHHHHHHHHTCCTTCEEEEEEEECSCCCCC--CTTCCEEEEEEGGGGHHHHHHHHHH
T ss_pred EEEEEEEc-------------CCCcchHHHHhcCCCCCEEEEEcCCcceECCC--CCCCCEEEEecchhHhHHHHHHHHH
Confidence 99999986 67999999997 99999999999999887753 2468999999999999999999999
Q ss_pred HhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeecccccc-----CCCccchhHH-HHhhHHHH
Q 017070 250 FMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNK-----KGGKMYVQDK-IEEYSDEI 323 (378)
Q Consensus 250 ~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~-----~~~~~~v~~~-i~~~~~~l 323 (378)
...+. .++++|+|++|+.++++|.++|++|.++++ ++++++++++++..| .+..|++... +.+.
T Consensus 282 ~~~~~-----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~---- 351 (396)
T 1gvh_A 282 AKAGH-----TAQVNWFHAAENGDVHAFADEVKELGQSLP-RFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGA---- 351 (396)
T ss_dssp HHHTC-----CSCEEEEEEESCTTTCCSHHHHHHHHHTSS-SEEEEEEESSCCHHHHHHTCCSEESSCCGGGSSSC----
T ss_pred HhcCC-----CCcEEEEEEeCCHHHhhhHHHHHHHHHHCC-CeEEEEEECCCCccccccCccCccCcCCHHHHhhc----
Confidence 87643 267999999999999999999999999988 899999999876543 2234455432 1110
Q ss_pred HhccCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 324 FKRLDGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 324 ~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
. .+ .+..||+|||++|++++++.|.+.|
T Consensus 352 ~-~~-~~~~vyvCGp~~m~~~v~~~L~~~G 379 (396)
T 1gvh_A 352 F-SD-PTMQFYLCGPVGFMQFTAKQLVDLG 379 (396)
T ss_dssp C-CC-TTCEEEEESCHHHHHHHHHHHHHTT
T ss_pred c-CC-CCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 0 12 3679999999999999999887554
No 28
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=1.5e-34 Score=302.72 Aligned_cols=276 Identities=25% Similarity=0.413 Sum_probs=218.4
Q ss_pred CCCCeEEEEeEEEEecCCCCCCceEEEEeeCCC--CccccCCcEEEEeCCCCC---------------CC----------
Q 017070 92 PKEPYTATIVSVERVVGAKAPGETCHIVIDHGG--NVPYWEGQSYGVIPPGEN---------------PK---------- 144 (378)
Q Consensus 92 ~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~~~~~---------------~~---------- 144 (378)
...++.++|+++++|++..+..++++|.|+..+ .+.|.||.++.|.+.+.. .+
T Consensus 248 ~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~~~~~~d~~v~~~~~~~ 327 (688)
T 1tll_A 248 KKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEE 327 (688)
T ss_dssp TSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTCSSCCCSCSCEEEEEEEE
T ss_pred cCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCCHHHHHHHHHHhCCCCCCCeEEEEecccc
Confidence 346789999999999998888899999999864 589999999999776531 00
Q ss_pred ---CCC--------------------------------------------------------------------------
Q 017070 145 ---KPG-------------------------------------------------------------------------- 147 (378)
Q Consensus 145 ---~~g-------------------------------------------------------------------------- 147 (378)
..|
T Consensus 328 ~~~p~~~~~~~~~~~~~p~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~i~e 407 (688)
T 1tll_A 328 RNTALGVISNWKDESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYEEWKWGKNPTMVE 407 (688)
T ss_dssp CCCSSSCCEEEEECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTCSHHHHHHHHHHCCCHHH
T ss_pred ccCCCcccccccccCCCCCccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhcCCCHHH
Confidence 000
Q ss_pred -------------------CCCCceecccccCCCCCCCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCE
Q 017070 148 -------------------NPHNVRLYSIASTRYGDSFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDK 208 (378)
Q Consensus 148 -------------------~~~~~R~ySias~p~~~~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~ 208 (378)
.+..+|+|||+|+|.. .++.++|+|+.+.|..+. + ....+.|.+|+||+++++|++
T Consensus 408 vl~~fps~~~p~~~l~~~lp~l~~R~YSIsSsp~~---~~~~i~l~V~vv~~~~~~-g-~~~~~~G~~S~~L~~l~~Gd~ 482 (688)
T 1tll_A 408 VLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDM---YPDEVHLTVAIVSYHTRD-G-EGPVHHGVCSSWLNRIQADDV 482 (688)
T ss_dssp HHHHSTTBCCCHHHHHHHSCBCCCEEEEBCSCTTT---STTEEEEEEECCEEETGG-G-TSCEEECHHHHHHTTCCTTSE
T ss_pred HHHhCCCcCCCHHHHHHhCcccceeEEeecCCccc---CCCeEEEEEEEEEEecCC-C-CCCcCCCchhHHHHhCCCCCE
Confidence 0135799999999864 137899999876554331 0 001145999999999999999
Q ss_pred EEEEe-eCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCC-CcccHHHHHHHHh
Q 017070 209 VLITG-PSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPD-SLLYDDEFTKYLQ 286 (378)
Q Consensus 209 v~v~G-P~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~-~~~~~del~~l~~ 286 (378)
|.|.+ |.|.|.+.. +..+|+||||||||||||++|++++...........++++||||+|+.+ |++|.+||++|.+
T Consensus 483 v~v~~~p~g~F~lp~--~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~ 560 (688)
T 1tll_A 483 VPCFVRGAPSFHLPR--NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKN 560 (688)
T ss_dssp EEEEEECCGGGSCCS--CTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHH
T ss_pred EEEEeccCCCcccCc--CCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHH
Confidence 99999 566777754 3468999999999999999999988764100000136899999999998 7899999999998
Q ss_pred hCCCceEEEEEeeccccccCCCccchhHHHHhh-HHHHHhcc-CCCeEEEEeCCCCcHHHHHHHHHHHHHHcC----CCH
Q 017070 287 DYPDNFRYDKALSREQKNKKGGKMYVQDKIEEY-SDEIFKRL-DGGAHIYFCGLKGMMPGIQETLKRVAEQRG----ESW 360 (378)
Q Consensus 287 ~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~-~~~l~~~~-~~~~~vyvCGp~~m~~~v~~~L~~~g~~~g----~~~ 360 (378)
.++ ++++++++||++..| ++|+++++.+. ..+++..+ +.+..||+|||++|+++|.++|.++..+.| ..+
T Consensus 561 ~~~-~~~l~~a~Sr~~~~~---k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i~~~~gg~~~~~a 636 (688)
T 1tll_A 561 KGV-FRELYTAYSREPDRP---KKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDA 636 (688)
T ss_dssp TTS-EEEEEEEESSCTTSC---CCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEEHHHHHHHHHHHHHHHHTTTCCCTTHH
T ss_pred cCC-ceEEEEEECCCCCCC---ccchhhhhHHhHHHHHHHhhccCCcEEEEeCCHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 886 789999999986533 68999999877 56666555 467899999999999999999999877665 478
Q ss_pred HHHHHHHHHcCCeEEeeC
Q 017070 361 DQKLSQLKKNKQWHVEVY 378 (378)
Q Consensus 361 ~~~~~~l~~~~r~~~e~~ 378 (378)
++++++|++.+|||.|+|
T Consensus 637 ~~~l~~l~~~~ry~~Evf 654 (688)
T 1tll_A 637 GVFISRLRDDNRYHEDIF 654 (688)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhhhhcCCEEEEec
Confidence 899999999999999998
No 29
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=100.00 E-value=1.1e-34 Score=286.48 Aligned_cols=219 Identities=16% Similarity=0.261 Sum_probs=175.0
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCC--Cc-----cccCCcEEEEeCCCC--CCCCCCCCCCceecccccCCCCC
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGG--NV-----PYWEGQSYGVIPPGE--NPKKPGNPHNVRLYSIASTRYGD 164 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~--~~-----~~~pGQ~v~l~~~~~--~~~~~g~~~~~R~ySias~p~~~ 164 (378)
...+++|+++++++++ +++|+|+.++ ++ .|+||||+.|.++.. + ......|+|||+|.|.+
T Consensus 148 ~~~~~~V~~~~~~s~~-----i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~----~~~~~~R~ySi~s~p~~- 217 (399)
T 4g1v_A 148 GWKPFEITAKEYVASD-----IVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQE----NQYDALRHYSLCSASTK- 217 (399)
T ss_dssp SCEEEEEEEEEEEETT-----EEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTT----CCSCEEEEEEBSCSCCT-
T ss_pred cceEEEEEEEEEcCCC-----eEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCC----CccceeeeecccCCCCC-
Confidence 4578999999999998 9999999864 34 799999999986421 1 01147899999999864
Q ss_pred CCCCCEEEEEEEEeeeecCCCCCCCCCCCCchhhHhh-cCCCCCEEEEEeeCCCCCCCCCC--CCCCcEEEEecCCcchh
Q 017070 165 SFDGKTASLCVRRAVYYDPESGKEDPSKSGICSNFLC-NSKPGDKVLITGPSGKIMLLPED--NPNATHIMIATGTGIAP 241 (378)
Q Consensus 165 ~~~~~~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~--~~~~~vv~IAgGtGiaP 241 (378)
+.++|+||+.. + ....++|.+|+||+ ++++||+|.|.||+|.|.+.... ...+++|||||||||||
T Consensus 218 ----~~~~i~Vk~~~------~-~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP 286 (399)
T 4g1v_A 218 ----NGLRFAVKMEA------A-RENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTP 286 (399)
T ss_dssp ----TCEEEEEECCC------C-BTTBCCCHHHHHHHHTCCTTCEEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHH
T ss_pred ----CeEEEEEEecc------C-CCCCCCCEehhHHHhCCCCCCEEEEEecccceeeCcccccCCCCCEEEEecceeHhH
Confidence 67999999830 0 00015799999997 59999999999999998876520 03689999999999999
Q ss_pred hHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhH-HHHhhH
Q 017070 242 FRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQD-KIEEYS 320 (378)
Q Consensus 242 ~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~-~i~~~~ 320 (378)
+++|++++...+. .++++|+|++|+.++++|.++|+++.++++ +++++++++++. |++.. .+.+
T Consensus 287 ~~s~l~~l~~~~~-----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~-------g~~~~~~l~~-- 351 (399)
T 4g1v_A 287 LLAMLEEQVKCNP-----NRPIYWIQSSYDEKTQAFKKHVDELLAECA-NVDKIIVHTDTE-------PLINAAFLKE-- 351 (399)
T ss_dssp HHHHHHHHHHHCT-----TSCEEEEEEESSSTTSTTHHHHHHHHTTCS-SEEEEEEETTTS-------CCCCHHHHHH--
T ss_pred HHHHHHHHHHcCC-----CCCEEEEEecCCHHHhhhHHHHHHHHHhCC-CcEEEEEEeCCC-------CcccHHHHHh--
Confidence 9999999987753 268999999999999999999999999998 899999998764 34432 2221
Q ss_pred HHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 321 DEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 321 ~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
.+..+..||+|||++|++++++.|.+.|
T Consensus 352 -----~~~~~~~vyvCGp~~m~~~v~~~L~~~G 379 (399)
T 4g1v_A 352 -----KSPAHADVYTCGSLAFMQAMIGHLKELE 379 (399)
T ss_dssp -----HSCSSCEEEEEECHHHHHHHHHHHHHTT
T ss_pred -----hCCCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 2234789999999999999999987654
No 30
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=100.00 E-value=2.5e-35 Score=291.46 Aligned_cols=223 Identities=20% Similarity=0.262 Sum_probs=176.8
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCC--C-ccccCCcEEEEeCCCCCCCCCCCC-CCceecccccCCCCCCCCCC
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGG--N-VPYWEGQSYGVIPPGENPKKPGNP-HNVRLYSIASTRYGDSFDGK 169 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~--~-~~~~pGQ~v~l~~~~~~~~~~g~~-~~~R~ySias~p~~~~~~~~ 169 (378)
....++|++++.++++ +++|+|+.++ . ..|+||||+.|.++..+ .+ ...|+|||+|.|.+ +
T Consensus 153 ~~~~~~V~~~~~~s~~-----i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~-----~~~~~~R~YSi~s~p~~-----~ 217 (403)
T 1cqx_A 153 GWRTFVIREKRPESDV-----ITSFILEPADGGPVVNFEPGQYTSVAIDVPA-----LGLQQIRQYSLSDMPNG-----R 217 (403)
T ss_dssp SCEEEEEEEEEECSSS-----EEEEEEEETTCCCCCCCCTTCEEEEEEEETT-----TTEEEEEEEECCSCCCS-----S
T ss_pred cceeEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCCCCCCEEEEEEecCC-----CCcceeecceecCCCCC-----C
Confidence 4578999999999998 9999999764 3 47999999999886311 11 35899999999853 6
Q ss_pred EEEEEEEEeeeecCCCCCCCCCCCCchhhHhhc-CCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHH
Q 017070 170 TASLCVRRAVYYDPESGKEDPSKSGICSNFLCN-SKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRR 248 (378)
Q Consensus 170 ~l~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~ 248 (378)
.++|+||+.. . . ..++|.+|+||++ +++||+|.|.||+|.|.+.. +..+++|||||||||||+++|+++
T Consensus 218 ~~~i~Vk~~~----~-~---~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~~--~~~~~~vlIagGtGitP~~s~l~~ 287 (403)
T 1cqx_A 218 TYRISVKREG----G-G---PQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDV--DAKTPIVLISGGVGLTPMVSMLKV 287 (403)
T ss_dssp CEEEEEECCC----B-T---TBCCCHHHHHHHHHCCTTCEEEECCCBCSCSCCT--TCCSCEEEEESSCCHHHHHHHHHH
T ss_pred eEEEEEEECC----C-C---CCCCCeehHHHhhCCCCCCEEEEecCccCcccCC--CCCCCEEEEEecccHhhHHHHHHH
Confidence 8999999850 0 0 0126999999996 99999999999999887753 246899999999999999999999
Q ss_pred HHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccC-----CCccchhHHHHhhHHHH
Q 017070 249 MFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKK-----GGKMYVQDKIEEYSDEI 323 (378)
Q Consensus 249 ~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~-----~~~~~v~~~i~~~~~~l 323 (378)
+.. +. .++++|+|++|+.++++|.++|++|.++++ ++++++++++++..|. +..|++.... +.++
T Consensus 288 l~~-~~-----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~---l~~~ 357 (403)
T 1cqx_A 288 ALQ-AP-----PRQVVFVHGARNSAVHAMRDRLREAAKTYE-NLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQ---IEKS 357 (403)
T ss_dssp HTC-SS-----CCCEEEEEEESCSSSCHHHHHHHHHHHHCT-TEEEEEEESSCCTTCCBTTTBSEESSCCGGG---SHHH
T ss_pred HHh-CC-----CCcEEEEEEeCChhhCcHHHHHHHHHHhCC-CcEEEEEECCCCcccccccccCcCCCcCHHH---Hhhc
Confidence 876 22 367999999999999999999999999998 8999999998766543 2345554321 1221
Q ss_pred HhccCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 017070 324 FKRLDGGAHIYFCGLKGMMPGIQETLKRVA 353 (378)
Q Consensus 324 ~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g 353 (378)
. .+ .+..||+|||++|++++++.|.+.|
T Consensus 358 ~-~~-~~~~vyvCGp~~m~~~v~~~L~~~G 385 (403)
T 1cqx_A 358 I-LL-PDADYYICGPIPFMRMQHDALKNLG 385 (403)
T ss_dssp H-CC-TTCEEEEESSHHHHHHHHHHHHHTT
T ss_pred c-CC-CCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 1 22 3789999999999999999887654
No 31
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=100.00 E-value=2.4e-34 Score=268.39 Aligned_cols=206 Identities=19% Similarity=0.205 Sum_probs=167.6
Q ss_pred CeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 95 PYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 95 ~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
.+.++|+++++++++ +++|+|+.+. ...|+||||+.|.+++.+ +...|+|||+|.|.+ .+.++|
T Consensus 5 ~~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~------~~~~R~ySi~s~~~~----~~~l~~ 69 (262)
T 1ep3_B 5 QEMMTVVSQREVAYN-----IFEMVLKGTLVDEMDLPGQFLHLAVPNGA------MLLRRPISISSWDKR----AKTCTI 69 (262)
T ss_dssp EEEEEEEEEEEEETT-----EEEEEEESGGGGGCCSTTCEEEECCSCTT------CCSCEEEECCEEETT----TTEEEE
T ss_pred ccceEEEEEEEecCC-----EEEEEEEcCcccccCCCCceEEEEcCCCC------ceeeEEEEeeeecCC----CCEEEE
Confidence 357999999999998 9999999876 357999999999988632 258999999998864 378999
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEeeCCC-CCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhc
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGPSGK-IMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFME 252 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~-~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~ 252 (378)
+||.. +.|.+|+||+++++||+|.|.||+|. |.+.+. ...+++|||||||||||+++|++++...
T Consensus 70 ~vk~~-------------~~G~~S~~l~~l~~Gd~v~v~gP~G~~f~l~~~-~~~~~~lliagGtGitP~~s~l~~l~~~ 135 (262)
T 1ep3_B 70 LYRIG-------------DETTGTYKLSKLESGAKVDVMGPLGNGFPVAEV-TSTDKILIIGGGIGVPPLYELAKQLEKT 135 (262)
T ss_dssp EEECC-------------CTTSHHHHHHTCCTTCEEEEEEEESBCCCCTTC-CTTSEEEEEEEGGGSHHHHHHHHHHHHH
T ss_pred EEEEe-------------cCCchHHHHhcCCCCCEEEEEcccCCCccCCCc-cCCCeEEEEECcCcHHHHHHHHHHHHHc
Confidence 99986 67999999999999999999999999 655441 1368999999999999999999998865
Q ss_pred cCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccCCCeE
Q 017070 253 SVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLDGGAH 332 (378)
Q Consensus 253 ~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~ 332 (378)
+ ++++|+|++|+.++++|.++|++|... +++++ ++ ++|.+.++++++.+.+. +.+...
T Consensus 136 ~-------~~v~l~~~~r~~~~~~~~~el~~l~~~-----~~~~~-~~--~~~~~~~g~v~~~l~~~-------~~~~~~ 193 (262)
T 1ep3_B 136 G-------CQMTILLGFASENVKILENEFSNLKNV-----TLKIA-TD--DGSYGTKGHVGMLMNEI-------DFEVDA 193 (262)
T ss_dssp T-------CEEEEEEEESSGGGCCCHHHHHTSTTE-----EEEEE-ET--TCSSSEESCHHHHHHHC-------CSCCSE
T ss_pred C-------CeEEEEEEcCCHHHhhhHHHHhhhccC-----cEEEE-EC--CCCCcceeehHHHHHhh-------ccCCCE
Confidence 3 479999999999999999999887532 33333 33 23556678888765542 234679
Q ss_pred EEEeCCCCcHHHHHHHHHHH
Q 017070 333 IYFCGLKGMMPGIQETLKRV 352 (378)
Q Consensus 333 vyvCGp~~m~~~v~~~L~~~ 352 (378)
||+|||++|++++++ |.+.
T Consensus 194 vyvCGp~~m~~~v~~-l~~~ 212 (262)
T 1ep3_B 194 LYTCGAPAMLKAVAK-KYDQ 212 (262)
T ss_dssp EEEESCHHHHHHHHH-HTTT
T ss_pred EEEECCHHHHHHHHH-HHhC
Confidence 999999999999998 8654
No 32
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=1.1e-33 Score=271.66 Aligned_cols=205 Identities=19% Similarity=0.305 Sum_probs=168.2
Q ss_pred CCCCeEEEEeEEEEecCCCCCCceEEEEeeCCCC--c-cccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCC
Q 017070 92 PKEPYTATIVSVERVVGAKAPGETCHIVIDHGGN--V-PYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDG 168 (378)
Q Consensus 92 ~~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~--~-~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~ 168 (378)
+...+.++|++++.++++ +++|+|..+.. + .|+||||+.|.+++ ...|+|||+|.|.+ .
T Consensus 5 ~~~~~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~---------g~~R~ySi~s~~~~----~ 66 (321)
T 2pia_A 5 EDGFLRLKIASKEKIARD-----IWSFELTDPQGAPLPPFEAGANLTVAVPN---------GSRRTYSLCNDSQE----R 66 (321)
T ss_dssp TTTCEEEEEEEEEEEETT-----EEEEEEECTTCCCCCCCCTTCEEEEECTT---------SCEEEEECCSCTTC----C
T ss_pred CCCcEEEEEEEEEEcCCC-----EEEEEEEcCCCCcCCCCCCCCEEEEECCC---------CCcEEEEeCCCCCC----C
Confidence 346789999999999998 99999998763 3 79999999999975 27999999999864 3
Q ss_pred CEEEEEEEEeeeecCCCCCCCCCCCCc-hhhHhh-cCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHH
Q 017070 169 KTASLCVRRAVYYDPESGKEDPSKSGI-CSNFLC-NSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYL 246 (378)
Q Consensus 169 ~~l~l~Ir~~~~~~~~~~~~~~~~~G~-~S~~L~-~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil 246 (378)
+.++|+||+. ++|. +|+||+ ++++||+|.|.||+|.|.+.+ ..+++|||||||||||+++|+
T Consensus 67 ~~l~i~Vk~~-------------~~G~g~S~~L~~~l~~Gd~v~v~gP~g~f~l~~---~~~~~vliagG~GItP~~s~l 130 (321)
T 2pia_A 67 NRYVIAVKRD-------------SNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDK---RAKSFILVAGGIGITPMLSMA 130 (321)
T ss_dssp SEEEEEEECC-------------TTSCSHHHHHHHSCCTTCEEEECCCBCCSCCCT---TCSEEEEEEEGGGHHHHHHHH
T ss_pred CeEEEEEEEe-------------cCCcchhHHHHhcCCCCCEEEEeCCccccccCC---CCCCEEEEEecccHhHHHHHH
Confidence 7899999987 7788 999999 699999999999999988765 357999999999999999999
Q ss_pred HHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhc
Q 017070 247 RRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKR 326 (378)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~ 326 (378)
+++...+. .+++|+|++|+.++++|.+||.+|. +++++++++ +++.. +++.++++.+. .
T Consensus 131 ~~l~~~~~------~~v~l~~~~r~~~~~~~~~el~~l~--~~~~~~~~~--~~~~~---~g~~~~~~ll~--------~ 189 (321)
T 2pia_A 131 RQLRAEGL------RSFRLYYLTRDPEGTAFFDELTSDE--WRSDVKIHH--DHGDP---TKAFDFWSVFE--------K 189 (321)
T ss_dssp HHHHHHCS------SEEEEEEEESCGGGCTTHHHHHSTT--TTTTEEEEE--CTTCT---TSCCCHHHHHS--------S
T ss_pred HHHHHcCC------CcEEEEEEECChhhhHHHHHHhcCc--cCCeEEEEE--CCCcc---cCccCHHHHhc--------c
Confidence 99987641 4799999999999999999999886 234777754 44321 23344444332 2
Q ss_pred cCCCeEEEEeCCCCcHHHHHHHHHH
Q 017070 327 LDGGAHIYFCGLKGMMPGIQETLKR 351 (378)
Q Consensus 327 ~~~~~~vyvCGp~~m~~~v~~~L~~ 351 (378)
......||+|||++|++++++.|.+
T Consensus 190 ~~~~~~vyvCGP~~m~~~v~~~l~~ 214 (321)
T 2pia_A 190 SKPAQHVYCCGPQALMDTVRDMTGH 214 (321)
T ss_dssp CCTTEEEEEESCHHHHHHHHHHTTT
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHh
Confidence 2367899999999999999988864
No 33
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.96 E-value=2.1e-29 Score=233.82 Aligned_cols=206 Identities=13% Similarity=0.161 Sum_probs=153.6
Q ss_pred CCCeEEEEeEEEEecCCCCCCceEEEEeeCCCC--c-cccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCC
Q 017070 93 KEPYTATIVSVERVVGAKAPGETCHIVIDHGGN--V-PYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGK 169 (378)
Q Consensus 93 ~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~--~-~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~ 169 (378)
...+.++|++++.++++ +++|+|+.++. + .|.|||||.|.++..+ .+...|+|||++.+. +
T Consensus 6 ~~~~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~-----~~~~~R~YSi~~~~~------~ 69 (252)
T 2gpj_A 6 PAPRELEVIRSTYITPH-----MLRITLGGAGLAGFPADQESAYIKLLFPQAG-----ERPLMRTYTIRQQRD------D 69 (252)
T ss_dssp CCCEEEEEEEEEEEETT-----EEEEEEESGGGTTCCSCCTTCEEEEEECCTT-----SCCEEEEEECCEEET------T
T ss_pred CCcEEEEEEEEEEcCCC-----EEEEEEEcCChhhcCCCCCCCeEEEEcccCC-----CCCCCCceeeeccCC------C
Confidence 35688999999999998 99999998753 3 4799999999987521 124789999999763 4
Q ss_pred EEEEEEEEeeeecCCCCCCCCCCC-CchhhHhhcCCCCCEEEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHH
Q 017070 170 TASLCVRRAVYYDPESGKEDPSKS-GICSNFLCNSKPGDKVLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRR 248 (378)
Q Consensus 170 ~l~l~Ir~~~~~~~~~~~~~~~~~-G~~S~~L~~l~~Gd~v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~ 248 (378)
.++|.|+.. .+ |.+|+||+++++||+|.|.||.|.|.+.+ ..+++||||||||||||++|+++
T Consensus 70 ~~~i~~~~~-------------~~~G~~S~~l~~l~~Gd~l~v~gP~G~f~l~~---~~~~~lliagGtGitPi~s~l~~ 133 (252)
T 2gpj_A 70 EIDVDFVLH-------------DTDGPASSWAKTAQVGELIQIGGPGLKKLINF---EADWFLLAGDMTALPAISVNLAK 133 (252)
T ss_dssp EEEEEEECC-------------SSCCHHHHHHHHCCTTCEEEEEEEECCCCCCS---SSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEEEEe-------------CCCCcHHHHHhhCCCCCEEEEecCCCCCcCCC---CCceEEEEcchhhHHHHHHHHHh
Confidence 688888765 44 89999999999999999999999987765 24789999999999999999998
Q ss_pred HHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhCCCceEEEEEeeccccccCCCccchhHHHHhhHHHHHhccC
Q 017070 249 MFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDYPDNFRYDKALSREQKNKKGGKMYVQDKIEEYSDEIFKRLD 328 (378)
Q Consensus 249 ~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~~~~~~~~~~~Sr~~~~~~~~~~~v~~~i~~~~~~l~~~~~ 328 (378)
+... .++++++++++.++++..+ ..+ +++++++.+++.. +.+ ..+.+.+.+. ....
T Consensus 134 l~~~--------~~~~~~~~~~~~~d~~~l~-------~~~-~~~v~~~~~~~~~-~~g--~~~~~~l~~~-----~~~~ 189 (252)
T 2gpj_A 134 LPNN--------AVGYAVIEVLSEADIQPLV-------HPE-HVELHWVINPEAD-PEG--RPLVERIAQL-----PWLA 189 (252)
T ss_dssp SCTT--------CEEEEEEEESSGGGCCCCC-------CCT-EEEEEEEECSSCC-TTC--HHHHHHHTTS-----CCCS
T ss_pred CCCC--------CcEEEEEEECCHHHhhccc-------CCC-CcEEEEEeCCCCC-ccc--HHHHHHHHhc-----cCCC
Confidence 7321 3678899999987765322 233 7888877655432 101 1222222210 0112
Q ss_pred CCeEEEEeCCCCcHHHHHHHHH-HHHH
Q 017070 329 GGAHIYFCGLKGMMPGIQETLK-RVAE 354 (378)
Q Consensus 329 ~~~~vyvCGp~~m~~~v~~~L~-~~g~ 354 (378)
.+..+|+|||++|++++++.|. +.|.
T Consensus 190 ~~~~vy~CGP~~m~~av~~~l~~~~G~ 216 (252)
T 2gpj_A 190 GEPAVWIACEFNSMRALRRHFKQAHAL 216 (252)
T ss_dssp SCEEEEEEEEHHHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHhcCC
Confidence 4678999999999999999887 4443
No 34
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.89 E-value=1.2e-24 Score=187.71 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=94.9
Q ss_pred CCCCCE-EEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHH
Q 017070 203 SKPGDK-VLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEF 281 (378)
Q Consensus 203 l~~Gd~-v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del 281 (378)
|++||+ +.|.||+|+++..+ ..++++||||||||||+++|++++...+ .+++|+ ++|+.++++|.+||
T Consensus 1 L~~Gd~vl~v~gP~G~~f~~~---~~~~~llIaGG~GItPl~sm~~~l~~~~-------~~v~l~-g~r~~~d~~~~~el 69 (158)
T 3lrx_A 1 MKEGDSLLNVAGPLGTPVPME---KFGKILAIGAYTGIVEVYPIAKAWQEIG-------NDVTTL-HVTFEPMVILKEEL 69 (158)
T ss_dssp -----------CCCCCCBCCC---CCSEEEEEEETTHHHHHHHHHHHHHHHT-------CEEEEE-EECBGGGCCSHHHH
T ss_pred CcCCCEeeEEECCCCCCCccC---CCCeEEEEEccCcHHHHHHHHHHHHhcC-------CcEEEE-EeCCHHHhhHHHHH
Confidence 578999 69999999988764 3689999999999999999999987653 469999 99999999999999
Q ss_pred HHHHhhCCCceEEEEEeecc----ccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHHHH
Q 017070 282 TKYLQDYPDNFRYDKALSRE----QKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVAEQ 355 (378)
Q Consensus 282 ~~l~~~~~~~~~~~~~~Sr~----~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~~ 355 (378)
++|.. ++.+.++++++ +++|.+.+|++++.+.+.+.. .+...||+|||++|++++.+.|.+.|+.
T Consensus 70 ~~l~~----~~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~l~~-----~~~~~vy~CGP~~mm~~v~~~l~~~Gv~ 138 (158)
T 3lrx_A 70 EKAVT----RHIVEPVPLNPNQDFLANMKNVSQRLKEKVRELLES-----EDWDLVFMVGPVGDQKQVFEVVKEYGVP 138 (158)
T ss_dssp HHHSS----EEEECCBCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-----SCCSEEEEESCHHHHHHHHHHHGGGTCC
T ss_pred HHHHh----ceEEEEeeccccccCCCCCCCCcccccHHHHHhhcc-----CCCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence 99863 34444444432 234566677887765543322 1456899999999999999888766544
No 35
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.87 E-value=6.8e-23 Score=173.48 Aligned_cols=126 Identities=14% Similarity=0.141 Sum_probs=95.5
Q ss_pred EEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCCCcccCCeEEEEEeecCCCCcccHHHHHHHHhhC
Q 017070 209 VLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVPTYKFGGLAWLFLGVANPDSLLYDDEFTKYLQDY 288 (378)
Q Consensus 209 v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~~~~~~~~v~L~~g~r~~~~~~~~del~~l~~~~ 288 (378)
+.|.||+|+++..+ ..++++|||||+||||+++|++++...+ .+++|+ |+|+.++++|.+||++|..
T Consensus 3 ~~v~GP~G~~~~~~---~~~~~llIaGG~GiaPl~sm~~~l~~~~-------~~v~l~-g~R~~~~~~~~~el~~l~~-- 69 (142)
T 3lyu_A 3 LNVAGPLGTPVPME---KFGKILAIGAYTGIVEVYPIAKAWQEIG-------NDVTTL-HVTFEPMVILKEELEKAVT-- 69 (142)
T ss_dssp ----CCCSCCBCCC---CCSEEEEEEETTHHHHHHHHHHHHHHTT-------CEEEEE-EEEEGGGCCSHHHHHTTSS--
T ss_pred eeeeCCCCCCccCC---CCCeEEEEECcCcHHHHHHHHHHHHhcC-------CcEEEE-EeCCHHHhhHHHHHHHHHh--
Confidence 57899999999875 3589999999999999999999987653 469999 9999999999999998753
Q ss_pred CCceEEEEEeecc----ccccCCCccchhHHHHhhHHHHHhccCCCeEEEEeCCCCcHHHHHHHHHHHHH
Q 017070 289 PDNFRYDKALSRE----QKNKKGGKMYVQDKIEEYSDEIFKRLDGGAHIYFCGLKGMMPGIQETLKRVAE 354 (378)
Q Consensus 289 ~~~~~~~~~~Sr~----~~~~~~~~~~v~~~i~~~~~~l~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~ 354 (378)
++.+.++++++ +++|.+.+|++++.+.+... . .+...||+|||++|++++.+.+++.++
T Consensus 70 --~~~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~~~----~-~~~~~vy~CGP~~Mm~av~~~l~~~~~ 132 (142)
T 3lyu_A 70 --RHIVEPVPLNPNQDFLANMKNVSQRLKEKVRELLE----S-EDWDLVFMVGPVGDQKQVFEVVKEYGV 132 (142)
T ss_dssp --EEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHH----S-SCCSEEEEESCHHHHHHHHHHHHHHTC
T ss_pred --heEEEEeecccccCCCCCCCCCccchhHHHHHhcc----c-CCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 44555555543 33466667777766554322 2 245689999999999999999887765
No 36
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.83 E-value=2.9e-21 Score=169.65 Aligned_cols=140 Identities=11% Similarity=0.202 Sum_probs=98.1
Q ss_pred EEEEeeCCCCCCCCCCCCCCcEEEEecCCcchhhHHHHHHHHhccCC--CcccCCeEEEEEeecCCCCcc-cHHHHHHHH
Q 017070 209 VLITGPSGKIMLLPEDNPNATHIMIATGTGIAPFRGYLRRMFMESVP--TYKFGGLAWLFLGVANPDSLL-YDDEFTKYL 285 (378)
Q Consensus 209 v~v~GP~G~~~~~~~~~~~~~vv~IAgGtGiaP~~sil~~~~~~~~~--~~~~~~~v~L~~g~r~~~~~~-~~del~~l~ 285 (378)
|.|+||||.+++.. ...+++|||||||||||+++|+++++..... .....++++|+|++|+.++++ |.++|.++.
T Consensus 1 v~v~GP~G~~~~~~--~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~ 78 (186)
T 3a1f_A 1 IAVDGPFGTASEDV--FSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLE 78 (186)
T ss_dssp CCTTSTTSHHHHHH--TTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHH
T ss_pred CeEECCCCCCccCh--hhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHH
Confidence 35789999988643 2468999999999999999999998765200 000136899999999999987 999999998
Q ss_pred hhC-----CCceEEEEEeecccccc------------CCCc--------cch--hHHHHhhHHHHHhccC-CCeEEEEeC
Q 017070 286 QDY-----PDNFRYDKALSREQKNK------------KGGK--------MYV--QDKIEEYSDEIFKRLD-GGAHIYFCG 337 (378)
Q Consensus 286 ~~~-----~~~~~~~~~~Sr~~~~~------------~~~~--------~~v--~~~i~~~~~~l~~~~~-~~~~vyvCG 337 (378)
+.+ +++|++++++|++.... .+.. |.+ ...+ +++..... ....||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~----~~~~~~~~~~~~~v~~CG 154 (186)
T 3a1f_A 79 SQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEF----KTIASQHPNTRIGVFLCG 154 (186)
T ss_dssp HHHHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHH----HHHHHHSTTCEEEEEEES
T ss_pred HHHhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHH----HHHHHhCCCCcEEEEEeC
Confidence 864 45899999999863311 1111 111 1112 22222222 467899999
Q ss_pred CCCcHHHHHHHHHHHHH
Q 017070 338 LKGMMPGIQETLKRVAE 354 (378)
Q Consensus 338 p~~m~~~v~~~L~~~g~ 354 (378)
|++|++++++.|.+.+.
T Consensus 155 P~~m~~~v~~~l~~~g~ 171 (186)
T 3a1f_A 155 PEALAETLSKQSISNSE 171 (186)
T ss_dssp CHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhhc
Confidence 99999999999987654
No 37
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=81.03 E-value=0.21 Score=37.78 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.4
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
..|+..+++. |++|+| |+.|.+|++|+
T Consensus 60 ~~L~~~~~~~---g~~LaC---q~~~~~d~~v~ 86 (93)
T 1wri_A 60 SFLDDEQIEQ---GYVLTC---IAIPESDVVIE 86 (93)
T ss_dssp CSCCHHHHHT---TEEETT---TCEESSCEEEE
T ss_pred ccCCHHHHhC---CcEEee---eCEECCCEEEE
Confidence 4677777777 999999 99999999997
No 38
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=78.95 E-value=0.4 Score=36.51 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.2
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
..|+..+++. |++|+| |+.+.+|++|+
T Consensus 64 ~~L~~~e~~~---g~~LaC---q~~~~~d~~v~ 90 (98)
T 1czp_A 64 SFLDDDQIEA---GYVLTC---VAYPTSDVVIQ 90 (98)
T ss_dssp CSSCHHHHHT---TEEEGG---GCEESSCEEEE
T ss_pred ccCCHHHhhC---CeEEee---eCEECCCEEEE
Confidence 3577777777 999999 99999999997
No 39
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=77.66 E-value=0.35 Score=36.88 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=23.5
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
..|+..+++. |++|+| |+.+.+|++|+
T Consensus 62 ~~L~~~e~~~---g~~LaC---q~~~~~d~~i~ 88 (98)
T 1iue_A 62 SYLDEEQIKK---KYILLC---TCYPKSDCVIE 88 (98)
T ss_dssp CSSCHHHHHT---TEEEGG---GCEESSCEEEE
T ss_pred ccCCHHHHhC---CeEEEe---ECEECCCeEEE
Confidence 4677777777 999999 99999999997
No 40
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=77.48 E-value=0.35 Score=36.50 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=23.5
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
..|++.+++. |++|+| |+.+.+|++|+
T Consensus 60 ~~L~~~e~~~---g~~LaC---q~~~~~d~~i~ 86 (94)
T 1awd_A 60 SFLDDAQMGK---GFVLTC---VAYPTSDVTIL 86 (94)
T ss_dssp CSSCHHHHHT---TEEEGG---GCEESSCEEEE
T ss_pred ccCCHHHHhC---CcEEee---ECEECCCEEEE
Confidence 4577777777 999999 99999999997
No 41
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=76.32 E-value=0.32 Score=36.97 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=23.5
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
..|+..+++. |++|+| |+.+.+|++|+
T Consensus 62 ~~L~~~e~~~---g~~LaC---q~~~~~d~~v~ 88 (97)
T 1a70_A 62 SFLDDDQIDE---GWVLTC---AAYPVSDVTIE 88 (97)
T ss_dssp CSSCHHHHHH---TEEEGG---GCEESSCEEEE
T ss_pred ccCCHHHhhC---CeEEEe---ECEECCCEEEE
Confidence 4677777777 999999 99999999997
No 42
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=75.98 E-value=0.51 Score=35.54 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=23.1
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
..|++.++.. |++|+| |+.+.+|++|+
T Consensus 61 ~~L~~~~~~~---g~~LaC---~~~~~~~~~v~ 87 (95)
T 1frr_A 61 SFLDDGQMEE---GFVLTC---IAIPESDLVIE 87 (95)
T ss_dssp CSCCHHHHHT---TEEETT---TCEESSCEEEE
T ss_pred ccCCHHHHhC---CcEEee---ECEECCCEEEE
Confidence 4577777777 999999 99999999997
No 43
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=72.47 E-value=0.29 Score=37.29 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=24.5
Q ss_pred ccccccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 41 PVLSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 41 ~~~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
....|+..+++. |++|+| |+.+.+|++|+
T Consensus 65 e~~~L~~~~~~~---g~~LaC---q~~~~~d~~v~ 93 (98)
T 1jq4_A 65 SVQALPPEEEEE---GLVLLC---RTYPKTDLEIE 93 (98)
T ss_dssp CTTTSCHHHHHH---HCBCTT---TCCSSCCSEEE
T ss_pred cccccCHHHhcC---CcEEEe---eCEECCCEEEE
Confidence 345677777777 999999 99999999987
No 44
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=72.33 E-value=0.57 Score=35.52 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.2
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccceeec
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVS 75 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~ 75 (378)
..|+..++.. |++|+| |+.+.+|++|+
T Consensus 64 ~~L~~~e~~~---g~~LaC---~~~~~~d~~v~ 90 (98)
T 1frd_A 64 IFLDDEQMGK---GFALLC---VTYPRSNCTIK 90 (98)
T ss_dssp CSCCHHHHHT---TEEEGG---GCEESSSEEEE
T ss_pred ccCCHHHhhC---CcEEEe---ECEECCCEEEE
Confidence 3577777777 999999 99999999997
No 45
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=69.86 E-value=1.1 Score=34.59 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=22.8
Q ss_pred ccccc-cccCCcCCccEEEEeeeeeecccc---eeec
Q 017070 43 LSLDL-KSRNPRLRNRYVVCMSVQQASKSK---VAVS 75 (378)
Q Consensus 43 ~~l~~-~~~~~~~~g~~l~C~~~~~~~~sd---~~i~ 75 (378)
..|+. .++.. |++|+| |+.+.+| ++|+
T Consensus 69 ~~L~~~~~~~~---g~rLaC---q~~~~~dl~gl~v~ 99 (104)
T 3lxf_A 69 DLLDSSDHRTP---HSRLSC---QITINDKLEGLEVE 99 (104)
T ss_dssp HHHHTSTTCCT---TEEEGG---GCBCCGGGTTCEEE
T ss_pred HHhccccccCC---CcEEEe---eCEEccCCCCEEEE
Confidence 45776 67777 999999 9999999 8886
No 46
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=61.75 E-value=2.2 Score=34.16 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=22.1
Q ss_pred cccc-ccccCCcCCccEEEEeeeeeecccc---eeec
Q 017070 43 LSLD-LKSRNPRLRNRYVVCMSVQQASKSK---VAVS 75 (378)
Q Consensus 43 ~~l~-~~~~~~~~~g~~l~C~~~~~~~~sd---~~i~ 75 (378)
..|+ ..++.. |++|+| |+.+.+| ++|+
T Consensus 90 ~~L~~~~e~~~---g~RLaC---Q~~~~~dldgl~V~ 120 (126)
T 3hui_A 90 DMLDFGYDVRP---NSRLSC---QIKVSNELDGLIVT 120 (126)
T ss_dssp HHHTTSSSCCT---TEEEGG---GCBCCGGGTTEEEE
T ss_pred hhcCchhhccC---CeEEee---eCEECcCCCcEEEE
Confidence 3566 367777 999999 9999999 8886
No 47
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=59.97 E-value=6.4 Score=36.98 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=22.9
Q ss_pred CcEEEEecCCc--chhhHHHHHHHHhccC
Q 017070 228 ATHIMIATGTG--IAPFRGYLRRMFMESV 254 (378)
Q Consensus 228 ~~vv~IAgGtG--iaP~~sil~~~~~~~~ 254 (378)
.++|+.||||| |-|.+++.+++.+++.
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g~ 31 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARGY 31 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCCC
Confidence 57899999997 7899999999987653
No 48
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=58.94 E-value=2.3 Score=33.02 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=21.3
Q ss_pred ccccc-ccCCcCCccEEEEeeeeeecc-cceeec
Q 017070 44 SLDLK-SRNPRLRNRYVVCMSVQQASK-SKVAVS 75 (378)
Q Consensus 44 ~l~~~-~~~~~~~g~~l~C~~~~~~~~-sd~~i~ 75 (378)
.|+.. +++. |++|+| |+.+. +|++|+
T Consensus 72 ~L~~~~~~~~---g~rLaC---q~~~~~~dl~v~ 99 (113)
T 3ah7_A 72 MLDKAWGLEA---QSRLGC---QVFVADEDLTIE 99 (113)
T ss_dssp HHTTSTTCCT---TEEEGG---GCBCCSSCEEEE
T ss_pred hhhcccccCC---CcEEee---eCEEeCCCEEEE
Confidence 45554 6666 999999 99998 899997
No 49
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=58.46 E-value=2.4 Score=32.32 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=20.3
Q ss_pred cccc-cccCCcCCccEEEEeeeeeecccc---eeec
Q 017070 44 SLDL-KSRNPRLRNRYVVCMSVQQASKSK---VAVS 75 (378)
Q Consensus 44 ~l~~-~~~~~~~~g~~l~C~~~~~~~~sd---~~i~ 75 (378)
.|+. .++.. |++|+| |+.+.+| ++|+
T Consensus 72 ~L~~~~~~~~---g~rLaC---q~~~~~d~~~l~v~ 101 (103)
T 2wlb_A 72 MLDLAFGLEE---TSRLGC---QVLLRKDLDGIRVR 101 (103)
T ss_dssp HHTTBTTCCT---TEEEGG---GCBCCGGGTTEEEE
T ss_pred HHhcccCCCC---CcEeeE---eeEeCCCCCcEEEE
Confidence 4555 34566 999999 9999999 8875
No 50
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=55.41 E-value=2.5 Score=33.89 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=21.3
Q ss_pred ccccccc-cCCcCCccEEEEeeeeeecccc-eeec
Q 017070 43 LSLDLKS-RNPRLRNRYVVCMSVQQASKSK-VAVS 75 (378)
Q Consensus 43 ~~l~~~~-~~~~~~g~~l~C~~~~~~~~sd-~~i~ 75 (378)
..|+..+ ++. |++|+| |+.|.+| ++|+
T Consensus 86 ~~L~~~e~~~~---g~rLaC---q~~~~~d~i~i~ 114 (128)
T 1doi_A 86 QILSDEEVEDK---NVRLTC---IGSPDADEVKIV 114 (128)
T ss_dssp SSSCHHHHHTS---CEEEGG---GEEECSSEEEEE
T ss_pred ccCCHhHhccC---CEEEEE---EeEEcCCeEEEE
Confidence 4566645 566 999999 9999999 7775
No 51
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=54.78 E-value=1.9 Score=32.94 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=22.1
Q ss_pred cccc--ccccCCcCCccEEEEeeeeeeccc---ceeec
Q 017070 43 LSLD--LKSRNPRLRNRYVVCMSVQQASKS---KVAVS 75 (378)
Q Consensus 43 ~~l~--~~~~~~~~~g~~l~C~~~~~~~~s---d~~i~ 75 (378)
..|+ ..++.. |++|+| |+.+.+ |++|+
T Consensus 69 ~~L~~~~~~~~~---g~rLaC---q~~~~~~~~~l~v~ 100 (105)
T 1b9r_A 69 DLLQSTGEPMTA---GTRLSC---QVFIDPSMDGLIVR 100 (105)
T ss_dssp HHHHTSCCCCCT---TBSCGG---GCCCCTTSTTEEEE
T ss_pred HHhhcccccCCC---CcEeee---eCEecCCCCcEEEE
Confidence 4576 577777 999999 999999 67776
No 52
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=51.94 E-value=3.5 Score=38.15 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=22.4
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccc-eeec
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSK-VAVS 75 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd-~~i~ 75 (378)
..|+++++ . |++|+| |+.|.+| ++|+
T Consensus 294 ~~l~~~e~-~---g~~L~C---~~~~~~d~~~i~ 320 (321)
T 2pia_A 294 MVLRDDEK-G---TQIMVC---VSRAKSAELVLD 320 (321)
T ss_dssp SSCCTTTT-T---TEEETT---TCEESSSEEEEC
T ss_pred CCCChHHH-C---CeEEEe---EeEECCCcEEEe
Confidence 56888887 6 999999 9999998 8875
No 53
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=50.66 E-value=3.7 Score=31.34 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=21.0
Q ss_pred cccccc-ccC-CcCCccEEEEeeeeeecccc---eeec
Q 017070 43 LSLDLK-SRN-PRLRNRYVVCMSVQQASKSK---VAVS 75 (378)
Q Consensus 43 ~~l~~~-~~~-~~~~g~~l~C~~~~~~~~sd---~~i~ 75 (378)
..|+.. ++. . |++|+| |+.+.+| ++|+
T Consensus 69 ~~L~~~~~~~~~---g~rLaC---q~~~~~d~~~l~v~ 100 (106)
T 1uwm_A 69 DMIDFAYEPNPA---TSRLTC---QIKVTSLLDGLVVH 100 (106)
T ss_dssp HHHTTSSSCCTT---TEEEGG---GCBCCGGGTTEEEE
T ss_pred HHhcCccccCCC---CcEecc---cCEEccCCCCEEEE
Confidence 456665 566 7 999999 9999995 7775
No 54
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=48.09 E-value=3.9 Score=31.46 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=20.4
Q ss_pred cccc-cccCCcCCccEEEEeeeeeecccc---eeec
Q 017070 44 SLDL-KSRNPRLRNRYVVCMSVQQASKSK---VAVS 75 (378)
Q Consensus 44 ~l~~-~~~~~~~~g~~l~C~~~~~~~~sd---~~i~ 75 (378)
.|+. .++.. |++|+| |+.+.+| ++|+
T Consensus 74 ~L~~~~~~~~---g~rLaC---q~~~~~d~~~~~v~ 103 (109)
T 2y5c_A 74 MLDMAPLLQE---NSRLGC---QIVLTPELEGAEFT 103 (109)
T ss_dssp HHHTSTTCCT---TEEEGG---GCBCCGGGTTCEEE
T ss_pred HHhccccCCC---CcEeeE---EeEEecCCCeEEEE
Confidence 4552 46666 999999 9999998 7776
No 55
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=46.74 E-value=4.7 Score=30.76 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=20.5
Q ss_pred ccccccc-c-CCcCCccEEEEeeeeeecccc---eeec
Q 017070 43 LSLDLKS-R-NPRLRNRYVVCMSVQQASKSK---VAVS 75 (378)
Q Consensus 43 ~~l~~~~-~-~~~~~g~~l~C~~~~~~~~sd---~~i~ 75 (378)
..|+..+ + .. |++|+| |+.+.+| ++|+
T Consensus 69 ~~L~~~~~~~~~---g~rLaC---q~~~~~d~~~l~v~ 100 (106)
T 1xlq_A 69 GMLESVTAELKP---NSRLCC---QIIMTPELDGIVVD 100 (106)
T ss_dssp HHHTTCSSCCCT---TEEEGG---GCBCCGGGTTEEEE
T ss_pred HHhhcccccCCC---CcEeee---eeEeecCCCCEEEE
Confidence 3566655 4 66 999999 9999995 6675
No 56
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=44.58 E-value=5.3 Score=30.61 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=20.3
Q ss_pred ccccc-cccCCcCCccEEEEeeeeeecccc---eeec
Q 017070 43 LSLDL-KSRNPRLRNRYVVCMSVQQASKSK---VAVS 75 (378)
Q Consensus 43 ~~l~~-~~~~~~~~g~~l~C~~~~~~~~sd---~~i~ 75 (378)
..|+. .++.. |++|+| |+.+.+| ++|+
T Consensus 76 ~~L~~~~~~~~---g~rLaC---q~~~~~d~d~~~V~ 106 (108)
T 2bt6_A 76 DMLDLAYGLTD---RSRLGC---QICLTKAMDNMTVR 106 (108)
T ss_dssp HHHTTCTTCCT---TEEEGG---GCBCCGGGTTEEEE
T ss_pred HHHhCcccCCC---CcEeeE---EEEecCCCCCEEEE
Confidence 34554 55666 999999 9999995 7775
No 57
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=40.85 E-value=5.3 Score=29.73 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=17.7
Q ss_pred cccccccCCcCCccEEEEeeeeeeccccee
Q 017070 44 SLDLKSRNPRLRNRYVVCMSVQQASKSKVA 73 (378)
Q Consensus 44 ~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~ 73 (378)
.|+ ++.. |++|+| |+.+.+|+.
T Consensus 66 ~L~--~~~~---g~rLaC---q~~~~~d~~ 87 (93)
T 1l5p_A 66 FLE--DQPA---NARLAC---AITLSGEND 87 (93)
T ss_dssp HHT--TSCT---TEEEGG---GCEECGGGT
T ss_pred Hhc--CCCC---CcEEee---ECEECCCCC
Confidence 455 5666 999999 999999865
No 58
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=40.58 E-value=5.4 Score=40.74 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=24.4
Q ss_pred ccccccccCCcCCccEEEEeeeeeecccceeecc
Q 017070 43 LSLDLKSRNPRLRNRYVVCMSVQQASKSKVAVSP 76 (378)
Q Consensus 43 ~~l~~~~~~~~~~g~~l~C~~~~~~~~sd~~i~~ 76 (378)
..|++++++. |++|+| |+.+.+|++|+.
T Consensus 62 ~~Ls~~e~~~---G~rLaC---qa~~~sDl~Iel 89 (631)
T 3zyy_X 62 GKLKQEEIAQ---GYVLAC---QTYPESDLIIEI 89 (631)
T ss_dssp TTCCHHHHHT---TEEETT---TEEECSSEEEEC
T ss_pred ccCCHHHhcC---CcEEee---eCEECCCEEEEe
Confidence 4578888888 999999 999999999983
No 59
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=38.23 E-value=18 Score=33.31 Aligned_cols=48 Identities=8% Similarity=-0.184 Sum_probs=29.9
Q ss_pred CCCeEEEEeEEEEecCCCCCCceEEEEeeCCCC-ccccCCcEEEEeCCC
Q 017070 93 KEPYTATIVSVERVVGAKAPGETCHIVIDHGGN-VPYWEGQSYGVIPPG 140 (378)
Q Consensus 93 ~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~~~ 140 (378)
...+.++|..+............+.+++..+.+ ..++||+++.+.+..
T Consensus 222 ~~~~~g~V~~i~~~~~~~~~~~~~~v~i~~~~~~~~l~~G~~~~v~i~~ 270 (341)
T 3fpp_A 222 LTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQL 270 (341)
T ss_dssp SSCBCCCEEEECSSCCBSSSCBCCEEEEEEECSSSCCCTTCEEEEEEES
T ss_pred CCEEEEEEEEEecCccccCceEEEEEEEEeCCCccccCCCCEEEEEEEE
Confidence 356889998887654321111234556555433 458999999998764
No 60
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=36.68 E-value=7.9 Score=29.76 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=15.7
Q ss_pred ccEEEEeeeeeecc-cceeec
Q 017070 56 NRYVVCMSVQQASK-SKVAVS 75 (378)
Q Consensus 56 g~~l~C~~~~~~~~-sd~~i~ 75 (378)
|++|+| |+.+. +|++|+
T Consensus 82 g~rLaC---q~~~~~~dl~v~ 99 (111)
T 1i7h_A 82 ESRLSC---QARVTDEDLVVE 99 (111)
T ss_dssp TEEETT---TCBCCSSCEEEE
T ss_pred CcEEEE---EEEEeCCCEEEE
Confidence 899999 99996 899997
No 61
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=35.26 E-value=2e+02 Score=24.23 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=50.6
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCCCc-c-ccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEE
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGGNV-P-YWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTA 171 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~~-~-~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l 171 (378)
-.-.++|+++++... -+.++|+.|..+ + ..++.+|.+ +| =..|++.... +.+
T Consensus 102 Vdg~g~i~~i~~~~~------~~~~~i~~p~~l~~~i~~KgSIav--dG------------vSLTV~~v~~------~~f 155 (186)
T 3ddy_A 102 IKGTALVAAIEENDA------GFSVLIDIPKGLAENLTVKDDIGI--DG------------ISLPITDMSD------SII 155 (186)
T ss_dssp CCEEEEEEEEECCSS------EEEEEEECCTTTCSCCCTTCEEEE--TT------------EEEECCEEET------TEE
T ss_pred EeEEEEEEEEEECCC------eEEEEEEcCHHHhhccccCcEEEE--Ee------------EEEEEEeecC------CEE
Confidence 445688888887654 677888887654 4 457887776 23 3466766532 455
Q ss_pred EEEEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEe
Q 017070 172 SLCVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITG 213 (378)
Q Consensus 172 ~l~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~G 213 (378)
++.+-. .=.--.-|..+++||.|.++-
T Consensus 156 ~v~lIp---------------~Tl~~T~l~~~~~Gd~VNlE~ 182 (186)
T 3ddy_A 156 TLNYSR---------------DLLASTNIASLAKDVKVNVEI 182 (186)
T ss_dssp EEEEEG---------------GGGGTSSGGGCCTTCEEEEEE
T ss_pred EEEEcH---------------HHHhhcccccCccCCEEEEEE
Confidence 555532 122223467799999999875
No 62
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.90 E-value=14 Score=25.26 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=28.6
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCHHHHHHHH-HHcCCe
Q 017070 337 GLKGMMPGIQETLKRVAEQRGESWDQKLSQL-KKNKQW 373 (378)
Q Consensus 337 Gp~~m~~~v~~~L~~~g~~~g~~~~~~~~~l-~~~~r~ 373 (378)
|......+..+.|.+.+++....|++.++.+ .++-||
T Consensus 1 ~~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 1 GAMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp CTTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHH
T ss_pred ChhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcc
Confidence 4455666777777777777778999999999 788776
No 63
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=32.72 E-value=1.1e+02 Score=20.40 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=27.8
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCC-C-------------CccccCCcEEEEeCCC
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHG-G-------------NVPYWEGQSYGVIPPG 140 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~-~-------------~~~~~pGQ~v~l~~~~ 140 (378)
+.++++|.+++.... ..+++++.+ + .+.+.+||-+.+.+..
T Consensus 7 N~l~g~V~~i~~~g~------~~~V~l~~~~g~~l~a~it~~s~~~l~L~~G~~V~a~ika 61 (68)
T 1gut_A 7 NQLKGKVVGLKKGVV------TAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKS 61 (68)
T ss_dssp CEEEEEEEEEEECSS------EEEEEEEETTSCEEEEEEEHHHHHHHTCCTTCEEEEECCG
T ss_pred eEEEEEEEEEEeCCc------eEEEEEEeCCCCEEEEEeCHHHHHHCCCCCCCEEEEEEec
Confidence 458899999987654 556666543 1 1457888888887754
No 64
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=27.72 E-value=97 Score=20.47 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=27.2
Q ss_pred CCeEEEEeEEEEecCCCCCCceEEEEeeCCC-------------CccccCCcEEEEeCCC
Q 017070 94 EPYTATIVSVERVVGAKAPGETCHIVIDHGG-------------NVPYWEGQSYGVIPPG 140 (378)
Q Consensus 94 ~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-------------~~~~~pGQ~v~l~~~~ 140 (378)
..++++|.+++.... ..+++++.++ .+...+||-+.+.+..
T Consensus 7 N~l~g~V~~i~~~g~------~~~v~l~~~~~~l~a~it~~s~~~l~L~~G~~V~~~ika 60 (67)
T 1fr3_A 7 NKLEATVKEIVKGTV------MAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKA 60 (67)
T ss_dssp EEEEEEEEEEEECSS------EEEEEEEETTEEEEEEEEHHHHHHHTCCTTCEEEEEECG
T ss_pred eEEEEEEEEEEeCCc------eEEEEEEeCCCEEEEEeCHHHHHhCCCCCCCEEEEEEec
Confidence 357899999887543 4556655432 1457888888887654
No 65
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=25.78 E-value=3e+02 Score=23.13 Aligned_cols=77 Identities=13% Similarity=-0.008 Sum_probs=50.9
Q ss_pred eEEEEeEEEEecCCCCCCceEEEEeeCCCC-c-cccCCcEEEEeCCCCCCCCCCCCCCceecccccCCCCCCCCCCEEEE
Q 017070 96 YTATIVSVERVVGAKAPGETCHIVIDHGGN-V-PYWEGQSYGVIPPGENPKKPGNPHNVRLYSIASTRYGDSFDGKTASL 173 (378)
Q Consensus 96 ~~a~V~~~~~lt~~~~~~~v~~l~l~~~~~-~-~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~l~l 173 (378)
-.++|.++++... -.+++++.+.. + ....|+.|.+. | -.+|+.... ++.+.+
T Consensus 8 ~vG~V~~i~~~~~------~~~l~i~~~~~~~~~~~~GdSIAvn--G------------vCLTV~~~~------~~~f~v 61 (186)
T 3ddy_A 8 GRGVIRSISKSED------SQRHGIAFPEGMFQLVDVDTVMLVN--G------------CSNTVVRIL------GDMVYF 61 (186)
T ss_dssp EEEEEEEEEECSS------CEEEEEECCTTTGGGCCTTCEEEET--T------------EEEEEEEEE------TTEEEE
T ss_pred eEEEEEEEEECCC------cEEEEEEeChHHhccCCCCCeEEEe--e------------EEEEEEEEc------CCEEEE
Confidence 4588888888654 67888888754 3 37899988872 2 346666543 256766
Q ss_pred EEEEeeeecCCCCCCCCCCCCchhhHhhcCCCCCEEEEEee
Q 017070 174 CVRRAVYYDPESGKEDPSKSGICSNFLCNSKPGDKVLITGP 214 (378)
Q Consensus 174 ~Ir~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP 214 (378)
.+ .. |- --.-|..+++|+.|.++-.
T Consensus 62 dv-~E------Tl---------~~T~Lg~l~~G~~VNLEra 86 (186)
T 3ddy_A 62 DI-DQ------AL---------GTTTFDGLKEGDQVNLEIH 86 (186)
T ss_dssp EE-CT------TT---------TTSSGGGCCTTCEEEEECC
T ss_pred Eh-HH------hh---------hhCchhhcCCCCEEEECCC
Confidence 66 42 11 1123677999999999863
No 66
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=25.41 E-value=14 Score=34.58 Aligned_cols=26 Identities=8% Similarity=-0.319 Sum_probs=18.3
Q ss_pred EEEEeeCCCC-ccccCCcEEEEeCCCC
Q 017070 116 CHIVIDHGGN-VPYWEGQSYGVIPPGE 141 (378)
Q Consensus 116 ~~l~l~~~~~-~~~~pGQ~v~l~~~~~ 141 (378)
+.+++..+.+ ..++||+++.+.+...
T Consensus 266 ~~v~i~~~~~~~~l~~Gm~~~v~i~~~ 292 (369)
T 4dk0_A 266 YYANIIVENPEHVLRIGMTTENNIKIA 292 (369)
T ss_dssp CCCCBCCCCCSSCCCTTCEEEEECCCC
T ss_pred EEEEEEecCCCCcccCCcEEEEEEEEc
Confidence 4555655543 4589999999988753
No 67
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=25.36 E-value=2.2e+02 Score=25.98 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=31.7
Q ss_pred CCCeEEEEeEEEEecCCCCCCceEEEEeeCCC-CccccCCcEEEEeCCC
Q 017070 93 KEPYTATIVSVERVVGAKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPG 140 (378)
Q Consensus 93 ~~~~~a~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~ 140 (378)
...+.++|..+....+.. ..++.+++..+. ...++||+++.+.+..
T Consensus 236 ~~~~~g~v~~i~~~~d~~--~~~~~v~~~~~~~~~~l~~G~~~~v~i~~ 282 (359)
T 3lnn_A 236 DDPQPGKVRYVGQILDAD--TRTTKVRMVFDNPDGRLRPGMFAQATFLS 282 (359)
T ss_dssp SSCEEEEEEECCCCCCTT--SCCEEEEEEEECSSCCCCTTCEEEEEEEC
T ss_pred CCcEEEEEEEEecccCCC--CcEEEEEEEecCCCCCcCCCCEEEEEEec
Confidence 356889998887754431 236666666654 3458999999998765
Done!