Query 017071
Match_columns 378
No_of_seqs 414 out of 3778
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:21:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 3.4E-52 7.3E-57 382.0 22.9 319 54-376 23-383 (493)
2 PTZ00102 disulphide isomerase; 100.0 1.2E-41 2.5E-46 329.0 31.4 303 56-377 32-375 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 1.2E-41 2.6E-46 328.1 28.7 312 57-376 2-363 (462)
4 KOG0912 Thiol-disulfide isomer 100.0 1.2E-38 2.7E-43 268.2 18.5 283 61-350 1-323 (375)
5 PF01216 Calsequestrin: Calseq 100.0 6.2E-30 1.3E-34 220.5 25.0 290 55-350 33-372 (383)
6 KOG4277 Uncharacterized conser 100.0 1.3E-31 2.7E-36 225.7 13.6 264 71-346 41-351 (468)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 4E-25 8.7E-30 168.1 12.5 102 55-156 8-113 (113)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.9E-24 6.2E-29 162.3 12.0 99 57-155 2-100 (101)
9 KOG0910 Thioredoxin-like prote 99.9 3.3E-24 7.2E-29 165.3 11.4 106 56-161 43-149 (150)
10 PRK10996 thioredoxin 2; Provis 99.9 4.2E-23 9.1E-28 164.4 16.4 134 26-159 5-138 (139)
11 PF00085 Thioredoxin: Thioredo 99.9 1.1E-22 2.5E-27 154.3 15.4 102 58-159 1-103 (103)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 3.6E-23 7.8E-28 157.2 12.0 100 57-156 2-104 (104)
13 cd03065 PDI_b_Calsequestrin_N 99.9 5.5E-23 1.2E-27 157.2 12.8 105 55-160 8-119 (120)
14 cd02996 PDI_a_ERp44 PDIa famil 99.9 5.8E-23 1.3E-27 157.1 12.0 100 57-156 2-108 (108)
15 KOG0191 Thioredoxin/protein di 99.9 6.5E-22 1.4E-26 184.9 20.1 198 66-266 40-254 (383)
16 COG3118 Thioredoxin domain-con 99.9 7.9E-23 1.7E-27 174.6 12.5 107 56-162 23-132 (304)
17 TIGR02187 GlrX_arch Glutaredox 99.9 3.1E-21 6.7E-26 165.7 21.1 182 73-262 19-214 (215)
18 cd02994 PDI_a_TMX PDIa family, 99.9 3.4E-22 7.4E-27 151.0 12.7 99 57-158 2-101 (101)
19 PTZ00443 Thioredoxin domain-co 99.9 9.6E-22 2.1E-26 167.0 15.7 106 55-160 29-139 (224)
20 PHA02278 thioredoxin-like prot 99.9 6.9E-22 1.5E-26 147.8 12.8 93 63-155 4-100 (103)
21 cd02954 DIM1 Dim1 family; Dim1 99.9 5.2E-22 1.1E-26 149.2 10.6 90 63-152 2-93 (114)
22 cd02963 TRX_DnaJ TRX domain, D 99.9 9.7E-22 2.1E-26 150.6 12.2 100 59-158 7-110 (111)
23 cd03005 PDI_a_ERp46 PDIa famil 99.9 1E-21 2.2E-26 148.8 11.9 98 58-156 2-102 (102)
24 PRK09381 trxA thioredoxin; Pro 99.9 3.7E-21 8E-26 147.4 14.4 105 56-160 3-108 (109)
25 cd03002 PDI_a_MPD1_like PDI fa 99.9 1.4E-21 2.9E-26 150.0 11.9 99 58-156 2-108 (109)
26 cd02956 ybbN ybbN protein fami 99.9 2.6E-21 5.7E-26 144.7 12.4 93 65-157 2-96 (96)
27 cd02999 PDI_a_ERp44_like PDIa 99.9 2E-21 4.3E-26 145.6 10.8 84 71-156 16-100 (100)
28 cd02985 TRX_CDSP32 TRX family, 99.9 8.1E-21 1.8E-25 143.5 12.9 94 62-157 2-100 (103)
29 cd02997 PDI_a_PDIR PDIa family 99.9 6.2E-21 1.3E-25 145.0 12.0 100 57-156 1-104 (104)
30 cd02948 TRX_NDPK TRX domain, T 99.9 9.6E-21 2.1E-25 142.9 12.8 96 61-158 5-101 (102)
31 cd03001 PDI_a_P5 PDIa family, 99.9 1.1E-20 2.4E-25 143.4 12.6 100 57-156 1-102 (103)
32 cd03007 PDI_a_ERp29_N PDIa fam 99.8 5.6E-21 1.2E-25 144.1 10.3 99 57-159 2-115 (116)
33 TIGR01126 pdi_dom protein disu 99.8 1.2E-20 2.6E-25 142.8 11.5 99 61-159 1-101 (102)
34 cd02962 TMX2 TMX2 family; comp 99.8 6.2E-20 1.3E-24 146.7 15.6 90 56-145 28-126 (152)
35 cd02993 PDI_a_APS_reductase PD 99.8 1.7E-20 3.7E-25 143.4 11.6 100 57-156 2-109 (109)
36 cd02965 HyaE HyaE family; HyaE 99.8 2.7E-20 5.9E-25 138.8 11.9 98 57-154 11-110 (111)
37 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 5.9E-20 1.3E-24 139.6 11.0 98 58-156 2-104 (104)
38 cd03000 PDI_a_TMX3 PDIa family 99.8 1.7E-19 3.7E-24 136.8 11.8 94 64-159 7-103 (104)
39 cd02950 TxlA TRX-like protein 99.8 3E-19 6.4E-24 142.6 13.3 99 63-161 10-111 (142)
40 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.5E-19 3.3E-24 137.5 11.0 99 58-156 2-105 (105)
41 PLN00410 U5 snRNP protein, DIM 99.8 4.8E-19 1E-23 138.5 13.3 99 62-160 10-120 (142)
42 KOG0907 Thioredoxin [Posttrans 99.8 2.5E-19 5.5E-24 133.9 10.9 86 71-158 19-104 (106)
43 TIGR01068 thioredoxin thioredo 99.8 5.8E-19 1.3E-23 133.3 12.8 99 61-159 1-100 (101)
44 cd02953 DsbDgamma DsbD gamma f 99.8 2E-19 4.3E-24 136.5 9.8 93 64-156 2-103 (104)
45 cd02961 PDI_a_family Protein D 99.8 2.8E-19 6E-24 134.9 10.5 97 60-156 2-101 (101)
46 cd02957 Phd_like Phosducin (Ph 99.8 7.1E-19 1.5E-23 135.3 12.4 90 56-147 4-96 (113)
47 cd02989 Phd_like_TxnDC9 Phosdu 99.8 1E-18 2.2E-23 133.9 12.2 91 56-147 4-95 (113)
48 cd02984 TRX_PICOT TRX domain, 99.8 1.8E-18 3.9E-23 129.6 11.9 93 63-156 2-96 (97)
49 cd02949 TRX_NTR TRX domain, no 99.8 2.6E-18 5.7E-23 128.5 12.2 87 71-157 11-97 (97)
50 PTZ00051 thioredoxin; Provisio 99.8 4.9E-18 1.1E-22 127.5 11.6 90 62-153 7-96 (98)
51 TIGR00424 APS_reduc 5'-adenyly 99.8 1E-17 2.3E-22 156.2 14.4 107 52-158 347-461 (463)
52 cd02992 PDI_a_QSOX PDIa family 99.8 1.2E-17 2.6E-22 128.3 11.9 96 57-152 2-108 (114)
53 PF13848 Thioredoxin_6: Thiore 99.8 5.2E-18 1.1E-22 142.8 10.8 150 188-344 1-184 (184)
54 cd02986 DLP Dim1 family, Dim1- 99.8 1.2E-17 2.6E-22 124.4 11.1 78 64-141 3-82 (114)
55 PLN02309 5'-adenylylsulfate re 99.7 1.3E-17 2.7E-22 155.6 13.2 107 53-159 342-456 (457)
56 cd02951 SoxW SoxW family; SoxW 99.7 1.9E-17 4.2E-22 130.0 12.0 98 64-161 4-120 (125)
57 PTZ00062 glutaredoxin; Provisi 99.7 1.5E-16 3.1E-21 133.1 17.8 162 62-236 5-174 (204)
58 PRK15412 thiol:disulfide inter 99.7 7.6E-17 1.6E-21 135.2 15.9 88 71-161 66-177 (185)
59 KOG1731 FAD-dependent sulfhydr 99.7 4.6E-17 1E-21 150.1 15.1 215 54-272 37-284 (606)
60 cd02975 PfPDO_like_N Pyrococcu 99.7 3.1E-17 6.7E-22 125.7 11.8 95 66-161 15-111 (113)
61 PTZ00102 disulphide isomerase; 99.7 2.4E-17 5.1E-22 159.6 13.6 116 49-164 350-469 (477)
62 TIGR01295 PedC_BrcD bacterioci 99.7 5.9E-17 1.3E-21 125.5 12.9 99 57-157 7-121 (122)
63 cd02987 Phd_like_Phd Phosducin 99.7 5.8E-17 1.3E-21 133.6 12.9 90 55-146 61-154 (175)
64 cd02947 TRX_family TRX family; 99.7 1.2E-16 2.6E-21 118.2 12.6 91 65-156 2-92 (93)
65 KOG0908 Thioredoxin-like prote 99.7 3.9E-17 8.5E-22 135.1 10.1 100 62-163 8-109 (288)
66 PRK03147 thiol-disulfide oxido 99.7 3.5E-16 7.5E-21 130.3 14.6 106 54-159 42-171 (173)
67 KOG0190 Protein disulfide isom 99.7 4.8E-17 1E-21 150.6 8.5 111 49-161 358-474 (493)
68 PRK14018 trifunctional thiored 99.7 4E-16 8.6E-21 147.5 14.9 103 55-159 40-172 (521)
69 TIGR02738 TrbB type-F conjugat 99.6 2.5E-15 5.4E-20 120.6 12.7 87 71-159 48-152 (153)
70 cd02988 Phd_like_VIAF Phosduci 99.6 2E-15 4.4E-20 126.0 12.4 88 55-146 81-171 (192)
71 TIGR00411 redox_disulf_1 small 99.6 3.1E-15 6.8E-20 108.2 11.1 80 76-159 2-81 (82)
72 cd02982 PDI_b'_family Protein 99.6 2E-15 4.3E-20 114.3 10.3 88 72-159 11-102 (103)
73 TIGR00385 dsbE periplasmic pro 99.6 8.2E-15 1.8E-19 121.6 14.8 88 71-161 61-172 (173)
74 PRK13728 conjugal transfer pro 99.6 1.4E-14 2.9E-19 118.2 12.6 84 77-162 73-173 (181)
75 cd02959 ERp19 Endoplasmic reti 99.6 2E-15 4.4E-20 116.2 6.9 97 64-160 10-113 (117)
76 cd02952 TRP14_like Human TRX-r 99.6 5.1E-15 1.1E-19 112.9 9.0 78 62-139 8-102 (119)
77 cd03010 TlpA_like_DsbE TlpA-li 99.6 1.2E-14 2.7E-19 114.4 10.9 87 64-152 16-126 (127)
78 KOG0191 Thioredoxin/protein di 99.6 1.8E-14 3.9E-19 134.9 10.2 182 57-241 145-355 (383)
79 cd03008 TryX_like_RdCVF Trypar 99.5 3.6E-14 7.8E-19 112.5 10.2 71 72-142 24-128 (146)
80 PF13098 Thioredoxin_2: Thiore 99.5 2.5E-14 5.4E-19 110.0 8.3 85 72-156 4-112 (112)
81 cd02955 SSP411 TRX domain, SSP 99.5 7.6E-14 1.6E-18 107.8 10.5 97 62-158 4-117 (124)
82 TIGR01626 ytfJ_HI0045 conserve 99.5 2.3E-13 5E-18 111.7 12.6 89 65-156 51-176 (184)
83 cd03009 TryX_like_TryX_NRX Try 99.5 9.1E-14 2E-18 110.1 9.6 81 62-142 7-115 (131)
84 PHA02125 thioredoxin-like prot 99.5 2.4E-13 5.3E-18 96.0 10.1 70 77-155 2-72 (75)
85 cd02964 TryX_like_family Trypa 99.5 1.7E-13 3.6E-18 108.6 9.3 71 71-141 15-114 (132)
86 TIGR00412 redox_disulf_2 small 99.5 3.3E-13 7.1E-18 95.4 9.7 72 78-156 3-75 (76)
87 PTZ00056 glutathione peroxidas 99.5 2.7E-13 5.9E-18 114.5 10.9 106 56-161 22-179 (199)
88 TIGR01130 ER_PDI_fam protein d 99.5 3.6E-12 7.8E-17 123.1 19.6 206 56-267 217-457 (462)
89 PF13905 Thioredoxin_8: Thiore 99.5 3.7E-13 8.1E-18 100.1 9.8 66 73-138 1-94 (95)
90 TIGR02187 GlrX_arch Glutaredox 99.5 4.6E-13 9.9E-18 115.1 11.7 95 60-158 119-214 (215)
91 PRK00293 dipZ thiol:disulfide 99.5 3.5E-13 7.5E-18 131.5 11.8 97 62-159 459-569 (571)
92 PLN02399 phospholipid hydroper 99.5 5.8E-13 1.2E-17 114.3 11.7 108 54-161 80-235 (236)
93 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 4.6E-13 1E-17 104.8 10.2 96 58-155 5-121 (123)
94 TIGR02740 TraF-like TraF-like 99.5 7.3E-13 1.6E-17 117.0 12.5 88 72-161 165-265 (271)
95 TIGR02661 MauD methylamine deh 99.4 8.9E-13 1.9E-17 110.8 11.3 102 56-159 55-178 (189)
96 cd02966 TlpA_like_family TlpA- 99.4 8.4E-13 1.8E-17 101.7 9.5 85 61-145 7-116 (116)
97 PLN02412 probable glutathione 99.4 2.3E-12 5.1E-17 106.0 11.7 106 56-161 12-165 (167)
98 PF08534 Redoxin: Redoxin; In 99.4 1.7E-12 3.6E-17 104.9 10.3 88 61-148 16-136 (146)
99 cd02967 mauD Methylamine utili 99.4 1.1E-12 2.4E-17 101.2 8.7 69 72-140 20-109 (114)
100 PLN02919 haloacid dehalogenase 99.4 1.5E-12 3.2E-17 135.4 12.0 89 72-160 419-536 (1057)
101 cd03012 TlpA_like_DipZ_like Tl 99.4 1.9E-12 4.1E-17 101.7 9.6 75 72-146 22-125 (126)
102 TIGR02540 gpx7 putative glutat 99.4 6.7E-12 1.5E-16 102.0 10.9 101 59-159 8-152 (153)
103 PRK11509 hydrogenase-1 operon 99.4 2.2E-11 4.8E-16 93.8 12.9 105 60-164 21-128 (132)
104 cd00340 GSH_Peroxidase Glutath 99.4 3E-12 6.5E-17 103.9 8.6 95 60-155 9-151 (152)
105 PF13848 Thioredoxin_6: Thiore 99.3 2.1E-10 4.6E-15 96.3 19.7 167 90-262 7-184 (184)
106 cd02981 PDI_b_family Protein D 99.3 3.5E-11 7.6E-16 89.8 11.1 95 165-263 2-97 (97)
107 cd02958 UAS UAS family; UAS is 99.3 4.8E-11 1E-15 91.8 11.9 94 67-160 11-111 (114)
108 cd02973 TRX_GRX_like Thioredox 99.3 1.6E-11 3.4E-16 84.8 7.0 60 76-138 2-61 (67)
109 cd03066 PDI_b_Calsequestrin_mi 99.3 1E-10 2.2E-15 87.9 11.3 97 164-264 2-101 (102)
110 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 7.6E-11 1.6E-15 85.7 9.7 77 72-153 11-87 (89)
111 cd03069 PDI_b_ERp57 PDIb famil 99.2 1.2E-10 2.5E-15 87.8 10.7 95 164-263 2-103 (104)
112 cd02969 PRX_like1 Peroxiredoxi 99.2 1.7E-10 3.6E-15 95.7 12.6 95 72-166 24-158 (171)
113 COG4232 Thiol:disulfide interc 99.2 7.2E-11 1.6E-15 111.0 11.3 101 59-160 457-568 (569)
114 cd02960 AGR Anterior Gradient 99.2 3.4E-11 7.3E-16 92.8 7.4 82 66-148 16-101 (130)
115 PTZ00256 glutathione peroxidas 99.2 8.4E-11 1.8E-15 98.4 10.3 104 57-160 24-181 (183)
116 cd03017 PRX_BCP Peroxiredoxin 99.2 2.4E-10 5.1E-15 91.5 10.2 98 59-156 9-139 (140)
117 KOG0914 Thioredoxin-like prote 99.2 9.3E-11 2E-15 95.4 7.3 88 57-144 125-222 (265)
118 COG2143 Thioredoxin-related pr 99.2 1.9E-09 4.2E-14 83.2 13.9 108 69-176 38-165 (182)
119 PF13899 Thioredoxin_7: Thiore 99.1 1.9E-10 4.1E-15 82.8 7.2 69 66-135 10-81 (82)
120 smart00594 UAS UAS domain. 99.1 8.2E-10 1.8E-14 85.8 11.0 89 68-156 22-121 (122)
121 KOG0913 Thiol-disulfide isomer 99.1 2.4E-11 5.2E-16 100.3 2.1 101 57-160 25-126 (248)
122 cd03068 PDI_b_ERp72 PDIb famil 99.1 1.2E-09 2.5E-14 82.5 10.4 97 163-263 1-107 (107)
123 PRK00522 tpx lipid hydroperoxi 99.1 1.7E-09 3.6E-14 89.1 11.6 97 59-156 30-165 (167)
124 PF00578 AhpC-TSA: AhpC/TSA fa 99.0 7.3E-10 1.6E-14 86.7 7.9 70 72-141 24-123 (124)
125 PRK09437 bcp thioredoxin-depen 99.0 3E-09 6.4E-14 86.6 11.5 98 57-154 14-147 (154)
126 cd03007 PDI_a_ERp29_N PDIa fam 99.0 3.7E-09 8E-14 80.1 10.7 94 165-263 4-115 (116)
127 cd03015 PRX_Typ2cys Peroxiredo 99.0 3.1E-09 6.7E-14 88.2 11.3 88 72-159 28-156 (173)
128 TIGR03137 AhpC peroxiredoxin. 99.0 3.9E-09 8.4E-14 88.6 10.9 87 72-158 30-154 (187)
129 cd03014 PRX_Atyp2cys Peroxired 99.0 3E-09 6.5E-14 85.4 9.8 74 72-146 25-129 (143)
130 cd02970 PRX_like2 Peroxiredoxi 99.0 5.8E-09 1.2E-13 84.4 10.1 74 72-145 22-148 (149)
131 cd03018 PRX_AhpE_like Peroxire 99.0 8.6E-09 1.9E-13 83.4 10.9 88 60-147 14-134 (149)
132 COG0526 TrxA Thiol-disulfide i 98.9 4.1E-09 9E-14 81.2 8.7 82 73-154 32-118 (127)
133 PRK10382 alkyl hydroperoxide r 98.9 1.2E-08 2.5E-13 85.2 11.6 88 72-159 30-155 (187)
134 KOG2501 Thioredoxin, nucleored 98.9 3.2E-09 6.9E-14 83.4 6.7 70 71-140 31-129 (157)
135 PRK10606 btuE putative glutath 98.9 1.1E-08 2.3E-13 84.8 10.2 130 57-199 9-173 (183)
136 cd02971 PRX_family Peroxiredox 98.9 1.3E-08 2.9E-13 81.3 9.4 77 72-148 21-131 (140)
137 PRK13190 putative peroxiredoxi 98.9 2.7E-08 5.9E-13 84.5 11.4 89 72-160 26-154 (202)
138 KOG0911 Glutaredoxin-related p 98.8 4.4E-08 9.5E-13 81.0 11.1 164 71-235 15-199 (227)
139 TIGR02196 GlrX_YruB Glutaredox 98.8 2.9E-08 6.2E-13 69.7 8.7 68 77-156 2-73 (74)
140 cd03006 PDI_a_EFP1_N PDIa fami 98.8 3.1E-08 6.6E-13 75.4 9.1 94 162-260 9-113 (113)
141 cd02968 SCO SCO (an acronym fo 98.8 1.3E-08 2.8E-13 81.6 7.5 87 59-145 8-142 (142)
142 cd03003 PDI_a_ERdj5_N PDIa fam 98.8 6.4E-08 1.4E-12 72.6 10.8 92 164-260 3-101 (101)
143 PF00085 Thioredoxin: Thioredo 98.8 2.8E-08 6.1E-13 74.7 8.6 91 169-263 5-103 (103)
144 cd03004 PDI_a_ERdj5_C PDIa fam 98.8 5.5E-08 1.2E-12 73.4 9.7 94 163-260 2-104 (104)
145 TIGR03143 AhpF_homolog putativ 98.8 8.7E-07 1.9E-11 87.3 20.1 179 72-260 365-554 (555)
146 cd02996 PDI_a_ERp44 PDIa famil 98.8 9.3E-08 2E-12 72.7 10.2 93 164-260 3-108 (108)
147 PRK15000 peroxidase; Provision 98.8 8.4E-08 1.8E-12 81.2 10.9 87 72-158 33-160 (200)
148 cd01659 TRX_superfamily Thiore 98.7 5.1E-08 1.1E-12 66.1 7.5 60 77-137 1-63 (69)
149 PF13728 TraF: F plasmid trans 98.7 1.5E-07 3.3E-12 80.2 11.2 83 72-156 119-214 (215)
150 cd03016 PRX_1cys Peroxiredoxin 98.7 2.2E-07 4.8E-12 79.0 11.7 85 75-159 28-153 (203)
151 PRK13599 putative peroxiredoxi 98.7 1.9E-07 4.2E-12 79.7 11.3 88 72-159 27-155 (215)
152 TIGR02200 GlrX_actino Glutared 98.7 1.2E-07 2.5E-12 67.3 8.4 69 77-156 2-75 (77)
153 KOG0910 Thioredoxin-like prote 98.7 1.3E-07 2.9E-12 73.7 8.9 93 167-263 47-147 (150)
154 PTZ00137 2-Cys peroxiredoxin; 98.7 2.9E-07 6.2E-12 80.4 11.8 88 72-159 97-224 (261)
155 cd03065 PDI_b_Calsequestrin_N 98.6 2.9E-07 6.2E-12 70.6 9.8 94 163-262 10-117 (120)
156 cd03072 PDI_b'_ERp44 PDIb' fam 98.6 1E-08 2.3E-13 77.9 1.8 59 288-349 51-111 (111)
157 PF03190 Thioredox_DsbH: Prote 98.6 2.9E-07 6.4E-12 73.7 9.8 82 60-141 24-117 (163)
158 PRK13189 peroxiredoxin; Provis 98.6 4.4E-07 9.6E-12 78.1 11.7 88 72-159 34-162 (222)
159 cd03002 PDI_a_MPD1_like PDI fa 98.6 3.4E-07 7.4E-12 69.7 9.9 94 164-261 2-109 (109)
160 PRK13191 putative peroxiredoxi 98.6 6.8E-07 1.5E-11 76.4 12.0 88 72-159 32-160 (215)
161 cd03001 PDI_a_P5 PDIa family, 98.6 5.5E-07 1.2E-11 67.7 10.0 91 166-260 4-102 (103)
162 TIGR01126 pdi_dom protein disu 98.6 6.1E-07 1.3E-11 67.3 10.0 91 169-263 2-101 (102)
163 PF13192 Thioredoxin_3: Thiore 98.6 7.5E-07 1.6E-11 62.8 9.7 73 78-157 3-76 (76)
164 PTZ00253 tryparedoxin peroxida 98.6 8.9E-07 1.9E-11 75.2 11.5 87 72-158 35-162 (199)
165 PF02114 Phosducin: Phosducin; 98.5 7.7E-07 1.7E-11 78.1 10.1 102 56-159 125-237 (265)
166 cd02991 UAS_ETEA UAS family, E 98.5 1.9E-06 4.1E-11 65.9 10.8 91 69-160 13-113 (116)
167 TIGR02739 TraF type-F conjugat 98.5 2E-06 4.4E-11 74.6 11.4 87 72-160 149-248 (256)
168 PHA02278 thioredoxin-like prot 98.5 1.4E-06 3E-11 65.2 9.1 88 168-259 2-100 (103)
169 PF07912 ERp29_N: ERp29, N-ter 98.5 5.7E-06 1.2E-10 61.9 12.1 104 56-161 4-120 (126)
170 cd02994 PDI_a_TMX PDIa family, 98.5 2E-06 4.3E-11 64.4 10.0 91 164-262 3-101 (101)
171 cd02993 PDI_a_APS_reductase PD 98.5 1.7E-06 3.7E-11 65.8 9.5 93 164-260 3-109 (109)
172 cd02961 PDI_a_family Protein D 98.4 2.1E-06 4.6E-11 63.9 9.7 89 169-260 4-101 (101)
173 cd02989 Phd_like_TxnDC9 Phosdu 98.4 4.5E-06 9.8E-11 63.8 11.3 96 162-260 4-112 (113)
174 TIGR02180 GRX_euk Glutaredoxin 98.4 7.5E-07 1.6E-11 64.2 6.2 59 77-139 1-64 (84)
175 PRK10996 thioredoxin 2; Provis 98.4 3.1E-06 6.8E-11 67.3 10.2 91 169-263 41-138 (139)
176 PRK13703 conjugal pilus assemb 98.4 5E-06 1.1E-10 71.8 11.6 86 73-160 143-241 (248)
177 cd02999 PDI_a_ERp44_like PDIa 98.4 1.5E-06 3.3E-11 64.9 7.3 77 179-260 17-100 (100)
178 PRK09381 trxA thioredoxin; Pro 98.4 4.3E-06 9.4E-11 63.6 10.1 97 162-263 3-107 (109)
179 KOG1672 ATP binding protein [P 98.4 1.1E-06 2.4E-11 70.8 6.8 87 59-146 69-156 (211)
180 KOG4277 Uncharacterized conser 98.4 3.6E-06 7.7E-11 72.5 10.1 93 178-275 41-143 (468)
181 cd02998 PDI_a_ERp38 PDIa famil 98.3 3.1E-06 6.8E-11 63.7 8.7 88 170-260 7-105 (105)
182 cd02995 PDI_a_PDI_a'_C PDIa fa 98.3 3.3E-06 7.2E-11 63.5 8.7 93 164-260 2-104 (104)
183 cd02948 TRX_NDPK TRX domain, T 98.3 6.8E-06 1.5E-10 61.7 10.1 92 166-262 3-101 (102)
184 PRK11200 grxA glutaredoxin 1; 98.3 5.3E-06 1.1E-10 59.9 9.0 76 76-160 2-83 (85)
185 PF14595 Thioredoxin_9: Thiore 98.3 2.1E-06 4.7E-11 66.9 7.3 84 61-145 28-116 (129)
186 cd02956 ybbN ybbN protein fami 98.3 4.4E-06 9.6E-11 61.9 8.8 78 180-261 12-96 (96)
187 cd03005 PDI_a_ERp46 PDIa famil 98.3 3.5E-06 7.7E-11 63.1 8.3 89 166-260 4-102 (102)
188 cd02953 DsbDgamma DsbD gamma f 98.3 4.3E-06 9.4E-11 63.0 8.7 88 171-261 2-104 (104)
189 cd02983 P5_C P5 family, C-term 98.3 8.3E-07 1.8E-11 69.4 4.8 61 287-350 58-119 (130)
190 KOG0912 Thiol-disulfide isomer 98.3 4.6E-06 1E-10 72.0 9.4 101 170-273 3-115 (375)
191 cd03072 PDI_b'_ERp44 PDIb' fam 98.3 1.3E-05 2.9E-10 60.9 10.4 101 59-161 2-109 (111)
192 PTZ00443 Thioredoxin domain-co 98.2 9.9E-06 2.2E-10 69.3 10.2 96 163-264 31-139 (224)
193 TIGR01068 thioredoxin thioredo 98.2 1.3E-05 2.7E-10 59.8 9.7 91 169-263 2-100 (101)
194 cd02963 TRX_DnaJ TRX domain, D 98.2 1E-05 2.2E-10 61.7 9.0 90 169-262 10-110 (111)
195 cd02997 PDI_a_PDIR PDIa family 98.2 8.2E-06 1.8E-10 61.3 8.4 91 165-260 3-104 (104)
196 TIGR00424 APS_reduc 5'-adenyly 98.2 1.4E-05 3E-10 75.6 11.3 97 162-262 351-461 (463)
197 cd02954 DIM1 Dim1 family; Dim1 98.2 8.4E-06 1.8E-10 61.6 7.8 69 170-241 2-79 (114)
198 cd02981 PDI_b_family Protein D 98.2 2.3E-05 4.9E-10 58.1 9.9 88 64-158 8-96 (97)
199 cd02976 NrdH NrdH-redoxin (Nrd 98.2 1.7E-05 3.7E-10 55.1 8.4 67 77-155 2-72 (73)
200 PRK10877 protein disulfide iso 98.2 1.5E-05 3.3E-10 69.0 9.8 81 72-159 106-230 (232)
201 PF06110 DUF953: Eukaryotic pr 98.2 1.6E-05 3.5E-10 60.5 8.7 67 71-137 17-99 (119)
202 KOG2603 Oligosaccharyltransfer 98.2 2.3E-05 4.9E-10 68.3 10.6 112 53-164 37-170 (331)
203 PLN02309 5'-adenylylsulfate re 98.1 1.8E-05 3.9E-10 74.7 10.8 96 163-262 346-455 (457)
204 cd03000 PDI_a_TMX3 PDIa family 98.1 2.1E-05 4.5E-10 59.2 9.1 86 171-262 7-102 (104)
205 cd02985 TRX_CDSP32 TRX family, 98.1 3E-05 6.6E-10 58.2 9.6 89 169-262 2-101 (103)
206 PTZ00051 thioredoxin; Provisio 98.1 2.3E-05 5.1E-10 58.2 8.6 89 164-257 2-96 (98)
207 cd02957 Phd_like Phosducin (Ph 98.1 2.8E-05 6.1E-10 59.5 8.7 93 163-260 5-112 (113)
208 cd03020 DsbA_DsbC_DsbG DsbA fa 98.1 2E-05 4.3E-10 66.9 8.4 77 72-156 76-197 (197)
209 KOG3425 Uncharacterized conser 98.0 1.9E-05 4.2E-10 58.5 6.9 72 65-136 14-104 (128)
210 cd02965 HyaE HyaE family; HyaE 98.0 3.6E-05 7.8E-10 57.8 8.4 98 153-257 3-109 (111)
211 cd02982 PDI_b'_family Protein 98.0 6.6E-05 1.4E-09 56.3 10.1 83 180-263 12-102 (103)
212 cd02983 P5_C P5 family, C-term 98.0 0.00019 4.1E-09 56.2 12.9 108 57-164 3-119 (130)
213 PF07449 HyaE: Hydrogenase-1 e 98.0 4.7E-05 1E-09 56.5 8.8 95 56-151 9-106 (107)
214 PF00462 Glutaredoxin: Glutare 98.0 4.1E-05 8.8E-10 51.2 7.7 54 77-138 1-58 (60)
215 cd02987 Phd_like_Phd Phosducin 98.0 7.5E-05 1.6E-09 61.7 10.2 99 162-263 62-174 (175)
216 cd03073 PDI_b'_ERp72_ERp57 PDI 98.0 9.1E-05 2E-09 56.2 9.6 98 60-159 3-110 (111)
217 cd02984 TRX_PICOT TRX domain, 98.0 7.9E-05 1.7E-09 55.1 9.1 87 169-260 1-96 (97)
218 cd03070 PDI_b_ERp44 PDIb famil 98.0 4.9E-05 1.1E-09 54.7 7.5 83 164-252 1-85 (91)
219 TIGR03143 AhpF_homolog putativ 97.9 6.7E-05 1.4E-09 74.1 11.1 92 60-156 462-554 (555)
220 cd02950 TxlA TRX-like protein 97.9 6.6E-05 1.4E-09 59.9 9.1 90 171-263 11-109 (142)
221 KOG3414 Component of the U4/U6 97.9 0.00013 2.9E-09 54.5 9.8 78 63-140 11-90 (142)
222 cd03023 DsbA_Com1_like DsbA fa 97.9 0.00011 2.3E-09 59.5 9.9 33 72-104 4-36 (154)
223 cd02988 Phd_like_VIAF Phosduci 97.9 0.00013 2.9E-09 61.1 10.5 98 162-263 82-191 (192)
224 PLN00410 U5 snRNP protein, DIM 97.9 0.00018 4E-09 56.6 10.4 75 164-241 5-89 (142)
225 cd02947 TRX_family TRX family; 97.8 0.00011 2.3E-09 53.5 8.1 86 172-261 2-93 (93)
226 PRK11657 dsbG disulfide isomer 97.8 0.00014 3E-09 63.9 10.1 82 73-157 117-249 (251)
227 COG1225 Bcp Peroxiredoxin [Pos 97.8 0.00034 7.5E-09 55.8 11.3 102 58-159 15-155 (157)
228 TIGR02190 GlrX-dom Glutaredoxi 97.8 0.00014 3.1E-09 51.6 8.3 58 74-139 7-67 (79)
229 cd02975 PfPDO_like_N Pyrococcu 97.8 0.00023 5E-09 54.4 10.0 87 173-262 15-108 (113)
230 cd02949 TRX_NTR TRX domain, no 97.8 0.00015 3.2E-09 53.7 8.7 83 175-261 8-97 (97)
231 PF11009 DUF2847: Protein of u 97.8 0.00035 7.6E-09 51.6 10.1 91 62-152 6-104 (105)
232 PF07912 ERp29_N: ERp29, N-ter 97.8 0.00031 6.7E-09 52.8 9.7 95 169-264 10-119 (126)
233 PRK15317 alkyl hydroperoxide r 97.8 0.00018 3.9E-09 70.5 11.0 96 60-160 102-198 (517)
234 PF13462 Thioredoxin_4: Thiore 97.8 0.00029 6.3E-09 57.5 10.6 82 72-158 11-162 (162)
235 TIGR02183 GRXA Glutaredoxin, G 97.8 0.00018 4E-09 51.9 8.0 75 77-160 2-82 (86)
236 cd03073 PDI_b'_ERp72_ERp57 PDI 97.8 2.1E-05 4.6E-10 59.6 3.2 57 287-346 52-111 (111)
237 COG3118 Thioredoxin domain-con 97.7 0.00027 5.9E-09 61.7 9.9 99 164-266 25-132 (304)
238 KOG0907 Thioredoxin [Posttrans 97.7 0.00031 6.7E-09 52.7 9.0 79 180-263 21-105 (106)
239 cd03419 GRX_GRXh_1_2_like Glut 97.7 0.00013 2.8E-09 52.1 6.3 57 77-139 2-63 (82)
240 PRK15317 alkyl hydroperoxide r 97.7 0.005 1.1E-07 60.4 19.0 170 74-264 19-198 (517)
241 TIGR02194 GlrX_NrdH Glutaredox 97.6 0.00032 6.9E-09 48.8 7.4 66 78-154 2-70 (72)
242 PF01216 Calsequestrin: Calseq 97.6 0.00047 1E-08 61.2 9.9 185 163-357 35-259 (383)
243 cd02066 GRX_family Glutaredoxi 97.6 0.00032 6.9E-09 48.3 6.9 57 77-141 2-62 (72)
244 cd03019 DsbA_DsbA DsbA family, 97.6 0.00053 1.1E-08 57.0 9.4 38 72-109 14-51 (178)
245 PF02966 DIM1: Mitosis protein 97.6 0.0019 4.1E-08 49.3 11.1 78 62-140 7-87 (133)
246 TIGR01295 PedC_BrcD bacterioci 97.5 0.0011 2.5E-08 51.2 9.2 91 169-261 12-121 (122)
247 cd02951 SoxW SoxW family; SoxW 97.5 0.001 2.2E-08 51.8 9.1 90 170-262 3-117 (125)
248 PRK10329 glutaredoxin-like pro 97.5 0.0019 4.2E-08 45.9 9.6 72 77-160 3-77 (81)
249 cd03067 PDI_b_PDIR_N PDIb fami 97.4 0.0013 2.9E-08 47.4 8.2 96 62-158 8-110 (112)
250 TIGR03140 AhpF alkyl hydropero 97.4 0.0012 2.7E-08 64.6 11.1 95 60-159 103-198 (515)
251 PF05768 DUF836: Glutaredoxin- 97.4 0.00067 1.5E-08 48.3 6.8 78 77-157 2-81 (81)
252 cd02986 DLP Dim1 family, Dim1- 97.4 0.0011 2.3E-08 49.9 8.0 74 171-247 3-85 (114)
253 cd02992 PDI_a_QSOX PDIa family 97.4 0.0018 3.9E-08 49.5 9.3 89 164-256 3-108 (114)
254 PHA03050 glutaredoxin; Provisi 97.4 0.00098 2.1E-08 50.2 7.6 68 66-140 6-80 (108)
255 TIGR02181 GRX_bact Glutaredoxi 97.4 0.00051 1.1E-08 48.7 5.7 55 77-139 1-59 (79)
256 TIGR03140 AhpF alkyl hydropero 97.4 0.022 4.8E-07 55.9 18.9 170 73-263 19-198 (515)
257 PRK10954 periplasmic protein d 97.4 0.0015 3.1E-08 55.9 9.4 39 73-111 37-78 (207)
258 cd03029 GRX_hybridPRX5 Glutare 97.3 0.003 6.5E-08 43.7 8.9 66 77-156 3-71 (72)
259 cd03418 GRX_GRXb_1_3_like Glut 97.3 0.0012 2.5E-08 46.2 6.7 55 77-139 2-61 (75)
260 cd02962 TMX2 TMX2 family; comp 97.3 0.0023 5.1E-08 51.4 9.1 84 164-249 30-126 (152)
261 PRK11509 hydrogenase-1 operon 97.2 0.0049 1.1E-07 47.9 10.2 92 169-264 23-124 (132)
262 TIGR02189 GlrX-like_plant Glut 97.2 0.00091 2E-08 49.6 6.0 61 69-139 4-71 (99)
263 COG1999 Uncharacterized protei 97.2 0.012 2.6E-07 50.1 13.3 106 56-161 50-205 (207)
264 cd03027 GRX_DEP Glutaredoxin ( 97.2 0.0017 3.7E-08 45.2 6.7 54 77-138 3-60 (73)
265 cd03066 PDI_b_Calsequestrin_mi 97.1 0.011 2.3E-07 44.2 11.0 93 60-159 4-100 (102)
266 cd02972 DsbA_family DsbA famil 97.1 0.0016 3.5E-08 47.7 6.4 59 77-135 1-91 (98)
267 PTZ00062 glutaredoxin; Provisi 97.1 0.0042 9E-08 52.5 9.3 89 167-265 3-95 (204)
268 cd03013 PRX5_like Peroxiredoxi 97.1 0.0048 1E-07 50.0 9.5 73 72-144 28-138 (155)
269 KOG0908 Thioredoxin-like prote 97.1 0.0035 7.6E-08 53.2 8.5 96 163-263 2-105 (288)
270 TIGR00365 monothiol glutaredox 97.1 0.0033 7.1E-08 46.5 7.6 65 65-138 4-76 (97)
271 cd02952 TRP14_like Human TRX-r 97.0 0.0071 1.5E-07 46.3 8.9 71 167-240 6-100 (119)
272 cd03069 PDI_b_ERp57 PDIb famil 96.9 0.015 3.3E-07 43.5 10.1 90 62-159 7-103 (104)
273 PF00837 T4_deiodinase: Iodoth 96.9 0.017 3.7E-07 49.3 10.7 64 49-112 75-141 (237)
274 KOG2640 Thioredoxin [Function 96.8 0.0033 7.1E-08 55.2 6.2 89 72-162 75-164 (319)
275 COG0386 BtuE Glutathione perox 96.8 0.028 6.1E-07 44.2 10.4 105 55-160 7-160 (162)
276 cd03028 GRX_PICOT_like Glutare 96.7 0.0081 1.8E-07 43.7 7.0 48 83-138 21-72 (90)
277 PRK00293 dipZ thiol:disulfide 96.7 0.014 3E-07 57.8 10.5 97 164-263 454-569 (571)
278 COG0695 GrxC Glutaredoxin and 96.7 0.0069 1.5E-07 42.9 6.2 51 77-133 3-59 (80)
279 PRK10638 glutaredoxin 3; Provi 96.7 0.0071 1.5E-07 43.2 6.4 56 77-140 4-63 (83)
280 PF02630 SCO1-SenC: SCO1/SenC; 96.6 0.012 2.5E-07 48.7 8.1 60 56-115 35-98 (174)
281 PF13743 Thioredoxin_5: Thiore 96.6 0.0076 1.6E-07 49.9 6.9 31 79-109 2-32 (176)
282 TIGR00412 redox_disulf_2 small 96.5 0.016 3.6E-07 40.5 7.2 69 185-261 3-76 (76)
283 TIGR00411 redox_disulf_1 small 96.5 0.03 6.6E-07 39.5 8.5 72 183-262 2-80 (82)
284 COG1331 Highly conserved prote 96.2 0.027 5.9E-07 55.1 9.3 81 60-140 30-122 (667)
285 cd03067 PDI_b_PDIR_N PDIb fami 96.2 0.04 8.6E-07 39.9 7.6 99 164-263 3-111 (112)
286 PRK10824 glutaredoxin-4; Provi 96.2 0.022 4.8E-07 43.2 6.8 65 65-138 7-79 (115)
287 cd03071 PDI_b'_NRX PDIb' famil 96.1 0.0072 1.6E-07 44.1 3.6 56 290-347 59-116 (116)
288 KOG3171 Conserved phosducin-li 96.0 0.021 4.6E-07 47.2 6.3 102 56-159 138-250 (273)
289 KOG3170 Conserved phosducin-li 96.0 0.027 5.8E-07 46.2 6.6 86 56-145 91-179 (240)
290 cd03074 PDI_b'_Calsequestrin_C 95.8 0.0077 1.7E-07 44.0 2.6 59 287-346 55-120 (120)
291 KOG1731 FAD-dependent sulfhydr 95.7 0.019 4E-07 54.8 5.4 75 163-241 40-127 (606)
292 PRK12759 bifunctional gluaredo 95.6 0.043 9.3E-07 52.0 7.4 54 77-138 4-69 (410)
293 TIGR02740 TraF-like TraF-like 95.5 0.09 2E-06 46.8 8.9 81 180-263 166-263 (271)
294 KOG1752 Glutaredoxin and relat 95.5 0.11 2.4E-06 38.7 7.9 65 66-138 7-76 (104)
295 PF02114 Phosducin: Phosducin; 95.4 0.11 2.4E-06 45.9 8.8 99 163-264 126-238 (265)
296 PF11009 DUF2847: Protein of u 95.2 0.053 1.2E-06 40.2 5.2 89 166-256 3-104 (105)
297 PRK03147 thiol-disulfide oxido 95.1 0.16 3.5E-06 41.7 8.6 46 215-263 126-171 (173)
298 PF13098 Thioredoxin_2: Thiore 95.0 0.08 1.7E-06 40.0 6.2 79 179-260 4-112 (112)
299 KOG2792 Putative cytochrome C 95.0 0.43 9.3E-06 41.1 10.8 106 56-161 122-276 (280)
300 PRK14018 trifunctional thiored 95.0 0.058 1.3E-06 52.2 6.4 82 179-263 55-172 (521)
301 cd03011 TlpA_like_ScsD_MtbDsbE 95.0 0.097 2.1E-06 40.3 6.6 76 179-258 19-120 (123)
302 COG4232 Thiol:disulfide interc 94.9 0.084 1.8E-06 50.9 7.2 96 165-263 457-567 (569)
303 cd02959 ERp19 Endoplasmic reti 94.4 0.13 2.8E-06 39.4 6.0 70 171-241 10-87 (117)
304 cd03026 AhpF_NTD_C TRX-GRX-lik 94.3 0.45 9.9E-06 34.3 8.3 70 179-256 11-86 (89)
305 cd02958 UAS UAS family; UAS is 94.2 0.38 8.1E-06 36.5 8.1 89 172-263 9-110 (114)
306 cd02955 SSP411 TRX domain, SSP 94.2 0.3 6.4E-06 37.8 7.5 70 169-241 4-91 (124)
307 smart00594 UAS UAS domain. 94.0 0.36 7.7E-06 37.2 7.7 85 173-260 20-121 (122)
308 cd03068 PDI_b_ERp72 PDIb famil 93.9 1.2 2.6E-05 33.4 10.2 90 62-158 7-106 (107)
309 cd02973 TRX_GRX_like Thioredox 93.7 0.4 8.7E-06 32.2 6.7 51 183-236 2-58 (67)
310 TIGR00385 dsbE periplasmic pro 93.7 0.22 4.8E-06 41.0 6.4 82 179-263 62-170 (173)
311 cd03010 TlpA_like_DsbE TlpA-li 93.3 0.2 4.4E-06 38.7 5.4 73 180-256 25-126 (127)
312 PF01323 DSBA: DSBA-like thior 93.2 1.2 2.5E-05 37.2 10.3 35 119-157 159-193 (193)
313 COG1651 DsbG Protein-disulfide 93.1 0.62 1.4E-05 40.7 8.7 36 119-159 207-242 (244)
314 KOG0914 Thioredoxin-like prote 93.0 0.23 4.9E-06 41.6 5.3 78 164-241 126-216 (265)
315 PRK15412 thiol:disulfide inter 92.7 0.57 1.2E-05 39.1 7.5 81 179-262 67-174 (185)
316 cd03031 GRX_GRX_like Glutaredo 91.3 0.92 2E-05 36.2 6.8 53 77-137 2-68 (147)
317 TIGR02738 TrbB type-F conjugat 91.3 2.3 5E-05 34.2 9.2 79 180-262 50-151 (153)
318 COG3019 Predicted metal-bindin 90.9 5.3 0.00011 31.1 10.0 73 76-159 27-103 (149)
319 KOG1672 ATP binding protein [P 90.6 1.2 2.6E-05 36.7 6.8 98 161-263 65-177 (211)
320 cd02974 AhpF_NTD_N Alkyl hydro 90.1 5 0.00011 29.3 9.2 74 72-158 18-92 (94)
321 KOG1651 Glutathione peroxidase 90.0 1.8 3.9E-05 34.8 7.2 129 53-192 14-156 (171)
322 PLN02919 haloacid dehalogenase 89.8 1.6 3.5E-05 46.8 9.0 82 179-263 419-535 (1057)
323 cd02978 KaiB_like KaiB-like fa 88.9 2.5 5.3E-05 29.0 6.3 59 76-134 3-62 (72)
324 TIGR00762 DegV EDD domain prot 88.8 3.3 7.1E-05 37.0 9.1 157 113-284 9-169 (275)
325 PF13728 TraF: F plasmid trans 88.7 4.2 9.2E-05 34.8 9.2 76 180-258 120-212 (215)
326 cd02966 TlpA_like_family TlpA- 88.6 2.1 4.5E-05 31.7 6.7 59 180-241 19-108 (116)
327 TIGR02654 circ_KaiB circadian 88.4 2.4 5.3E-05 30.2 6.2 74 74-148 3-77 (87)
328 PRK09301 circadian clock prote 87.8 2.5 5.4E-05 31.1 6.1 75 73-148 5-80 (103)
329 PHA03075 glutaredoxin-like pro 87.4 1 2.3E-05 33.6 4.0 36 74-113 2-37 (123)
330 PF13905 Thioredoxin_8: Thiore 87.2 2.8 6.1E-05 30.2 6.5 14 181-194 2-15 (95)
331 PF00255 GSHPx: Glutathione pe 87.1 1.3 2.9E-05 33.2 4.6 58 57-115 5-63 (108)
332 cd03041 GST_N_2GST_N GST_N fam 87.1 7.9 0.00017 26.7 8.8 70 78-159 3-76 (77)
333 PHA02125 thioredoxin-like prot 86.8 1.6 3.5E-05 30.2 4.7 47 184-235 2-51 (75)
334 COG4545 Glutaredoxin-related p 86.7 2.4 5.3E-05 29.0 5.1 57 78-141 5-77 (85)
335 COG0450 AhpC Peroxiredoxin [Po 86.5 14 0.00029 30.8 10.4 87 73-159 33-160 (194)
336 cd02977 ArsC_family Arsenate R 86.3 0.81 1.8E-05 34.1 3.1 33 78-116 2-34 (105)
337 PF06053 DUF929: Domain of unk 86.2 8.2 0.00018 33.7 9.5 57 71-135 56-113 (249)
338 KOG2507 Ubiquitin regulatory p 85.8 9.8 0.00021 35.5 10.1 90 71-160 16-111 (506)
339 cd03009 TryX_like_TryX_NRX Try 85.1 2.9 6.2E-05 32.4 5.9 60 179-241 17-110 (131)
340 KOG3171 Conserved phosducin-li 84.6 4.6 9.9E-05 33.9 6.8 102 163-267 139-254 (273)
341 cd03037 GST_N_GRX2 GST_N famil 84.3 3.8 8.3E-05 27.7 5.6 68 79-157 3-70 (71)
342 cd03040 GST_N_mPGES2 GST_N fam 84.2 11 0.00024 25.8 9.1 72 77-161 2-77 (77)
343 cd02967 mauD Methylamine utili 84.1 6.9 0.00015 29.2 7.5 53 179-234 20-82 (114)
344 cd03060 GST_N_Omega_like GST_N 84.0 4.7 0.0001 27.3 5.9 56 78-138 2-58 (71)
345 PRK13728 conjugal transfer pro 83.6 4 8.7E-05 33.8 6.2 77 184-262 73-169 (181)
346 PF13417 GST_N_3: Glutathione 83.1 12 0.00027 25.5 8.6 72 79-162 1-73 (75)
347 KOG0913 Thiol-disulfide isomer 82.2 0.36 7.8E-06 41.0 -0.4 95 169-270 30-132 (248)
348 COG3531 Predicted protein-disu 81.7 3.1 6.7E-05 34.5 4.8 44 117-160 164-209 (212)
349 PRK01655 spxA transcriptional 81.5 2.9 6.4E-05 32.6 4.5 35 77-117 2-36 (131)
350 COG2761 FrnE Predicted dithiol 81.4 3.7 8.1E-05 35.1 5.3 44 117-164 174-217 (225)
351 TIGR01617 arsC_related transcr 81.0 3.5 7.6E-05 31.4 4.8 34 78-117 2-35 (117)
352 cd03035 ArsC_Yffb Arsenate Red 80.6 2.3 5.1E-05 31.7 3.5 33 78-116 2-34 (105)
353 PF13192 Thioredoxin_3: Thiore 80.4 8.6 0.00019 26.6 6.2 66 188-261 6-76 (76)
354 cd02960 AGR Anterior Gradient 80.3 4.6 0.0001 31.4 5.2 25 171-195 14-38 (130)
355 TIGR02742 TrbC_Ftype type-F co 79.6 4.2 9.1E-05 31.6 4.7 45 115-159 59-114 (130)
356 cd03036 ArsC_like Arsenate Red 79.6 2.7 5.9E-05 31.7 3.7 52 78-135 2-57 (111)
357 KOG2603 Oligosaccharyltransfer 79.3 26 0.00056 31.5 9.9 115 151-269 25-171 (331)
358 cd02964 TryX_like_family Trypa 78.8 12 0.00025 29.0 7.3 19 180-198 17-35 (132)
359 PF07449 HyaE: Hydrogenase-1 e 78.6 9.8 0.00021 28.5 6.2 68 169-240 15-92 (107)
360 TIGR02739 TraF type-F conjugat 78.5 17 0.00036 32.0 8.6 77 181-260 151-244 (256)
361 cd02990 UAS_FAF1 UAS family, F 77.9 32 0.00069 27.0 12.0 91 70-160 18-133 (136)
362 TIGR02196 GlrX_YruB Glutaredox 77.9 15 0.00032 24.5 6.9 66 184-261 2-74 (74)
363 cd02991 UAS_ETEA UAS family, E 77.5 11 0.00024 28.7 6.5 84 176-262 13-111 (116)
364 TIGR02661 MauD methylamine deh 77.5 16 0.00034 30.5 8.1 42 216-262 135-177 (189)
365 cd03008 TryX_like_RdCVF Trypar 76.4 10 0.00023 30.2 6.3 21 179-199 24-44 (146)
366 KOG0852 Alkyl hydroperoxide re 76.2 28 0.0006 28.5 8.4 87 71-158 31-159 (196)
367 cd00570 GST_N_family Glutathio 75.7 9.6 0.00021 24.9 5.3 51 79-133 3-55 (71)
368 cd03051 GST_N_GTT2_like GST_N 75.0 7.7 0.00017 26.1 4.7 52 78-133 2-57 (74)
369 PF14595 Thioredoxin_9: Thiore 74.9 13 0.00029 28.9 6.4 61 180-240 41-107 (129)
370 PF09822 ABC_transp_aux: ABC-t 74.8 60 0.0013 28.7 12.8 74 55-128 6-89 (271)
371 PF04592 SelP_N: Selenoprotein 74.0 5.8 0.00012 34.0 4.4 44 71-114 24-71 (238)
372 PRK12559 transcriptional regul 72.9 6.2 0.00014 30.8 4.2 34 77-116 2-35 (131)
373 PF07689 KaiB: KaiB domain; I 72.3 1.5 3.2E-05 31.0 0.5 53 80-132 3-56 (82)
374 cd03074 PDI_b'_Calsequestrin_C 71.8 39 0.00084 25.2 10.7 87 73-159 20-119 (120)
375 PF09673 TrbC_Ftype: Type-F co 71.7 14 0.00031 27.9 5.8 45 90-136 36-80 (113)
376 KOG3170 Conserved phosducin-li 70.7 20 0.00043 30.0 6.6 107 162-272 91-208 (240)
377 PF13778 DUF4174: Domain of un 70.6 45 0.00097 25.4 8.9 89 69-159 6-111 (118)
378 cd03032 ArsC_Spx Arsenate Redu 70.3 9.7 0.00021 28.8 4.6 33 78-116 3-35 (115)
379 cd03059 GST_N_SspA GST_N famil 69.8 30 0.00066 23.1 8.9 69 78-158 2-71 (73)
380 cd03024 DsbA_FrnE DsbA family, 69.6 6.1 0.00013 33.1 3.8 37 116-156 164-200 (201)
381 PRK13703 conjugal pilus assemb 65.5 18 0.0004 31.6 5.8 77 181-260 144-237 (248)
382 TIGR01626 ytfJ_HI0045 conserve 65.3 48 0.001 27.6 8.0 43 215-260 133-176 (184)
383 PF06953 ArsD: Arsenical resis 65.2 36 0.00078 26.2 6.7 66 92-160 23-102 (123)
384 cd03045 GST_N_Delta_Epsilon GS 65.1 15 0.00032 24.9 4.4 51 78-132 2-56 (74)
385 PF13899 Thioredoxin_7: Thiore 64.6 13 0.00027 26.1 4.0 25 171-195 8-32 (82)
386 cd03022 DsbA_HCCA_Iso DsbA fam 62.4 12 0.00026 31.0 4.2 35 117-156 157-191 (192)
387 PRK13344 spxA transcriptional 61.1 15 0.00033 28.6 4.2 34 77-116 2-35 (132)
388 COG1307 DegV Uncharacterized p 60.9 72 0.0016 28.6 8.9 158 112-284 10-172 (282)
389 cd02974 AhpF_NTD_N Alkyl hydro 60.1 64 0.0014 23.4 7.5 79 172-261 9-91 (94)
390 PF05768 DUF836: Glutaredoxin- 59.0 41 0.00088 23.5 5.8 74 184-261 2-81 (81)
391 COG0821 gcpE 1-hydroxy-2-methy 58.4 16 0.00036 33.0 4.3 76 85-160 264-351 (361)
392 PF09695 YtfJ_HI0045: Bacteria 56.8 79 0.0017 25.5 7.4 86 72-157 36-155 (160)
393 cd03055 GST_N_Omega GST_N fami 54.9 35 0.00075 24.3 5.0 53 77-133 19-72 (89)
394 PTZ00056 glutathione peroxidas 54.6 70 0.0015 26.9 7.5 21 180-200 39-59 (199)
395 cd03012 TlpA_like_DipZ_like Tl 52.6 70 0.0015 24.3 6.7 17 180-196 23-39 (126)
396 cd03025 DsbA_FrnE_like DsbA fa 51.0 22 0.00047 29.5 3.9 22 117-138 159-180 (193)
397 cd03025 DsbA_FrnE_like DsbA fa 51.0 22 0.00048 29.4 3.9 28 77-104 3-30 (193)
398 PF02645 DegV: Uncharacterised 50.3 55 0.0012 29.2 6.6 155 114-284 11-171 (280)
399 PRK13730 conjugal transfer pil 50.2 36 0.00079 28.6 4.8 42 116-158 151-192 (212)
400 COG2143 Thioredoxin-related pr 50.1 1.4E+02 0.0029 24.2 10.2 39 215-256 103-141 (182)
401 PF08806 Sep15_SelM: Sep15/Sel 49.2 29 0.00063 24.3 3.6 34 127-160 41-76 (78)
402 TIGR02180 GRX_euk Glutaredoxin 49.0 65 0.0014 22.1 5.6 69 184-264 1-79 (84)
403 PF04551 GcpE: GcpE protein; 47.8 21 0.00046 32.8 3.4 75 85-159 271-358 (359)
404 PF04134 DUF393: Protein of un 47.8 29 0.00062 26.0 3.8 63 80-146 2-67 (114)
405 PF08534 Redoxin: Redoxin; In 47.4 1.3E+02 0.0029 23.3 7.9 46 205-250 83-134 (146)
406 COG3634 AhpF Alkyl hydroperoxi 43.4 2.4E+02 0.0051 26.3 9.1 81 72-157 115-195 (520)
407 KOG1422 Intracellular Cl- chan 42.9 1.5E+02 0.0033 25.1 7.3 69 84-163 20-88 (221)
408 TIGR02742 TrbC_Ftype type-F co 40.8 45 0.00098 26.0 3.8 48 211-261 55-112 (130)
409 COG0278 Glutaredoxin-related p 40.7 1.4E+02 0.0031 22.0 6.0 70 64-138 6-80 (105)
410 cd03033 ArsC_15kD Arsenate Red 40.0 38 0.00082 25.6 3.3 32 77-114 2-33 (113)
411 cd03052 GST_N_GDAP1 GST_N fami 40.0 1.2E+02 0.0025 20.5 5.6 55 78-138 2-60 (73)
412 PF11337 DUF3139: Protein of u 40.0 37 0.0008 24.1 3.1 6 1-6 1-6 (85)
413 KOG2244 Highly conserved prote 39.9 25 0.00054 34.1 2.7 76 60-135 99-185 (786)
414 TIGR03521 GldG gliding-associa 39.9 4E+02 0.0086 26.6 14.4 77 53-129 27-116 (552)
415 PRK10299 PhoPQ regulatory prot 38.8 36 0.00078 20.9 2.3 15 1-15 1-15 (47)
416 KOG0855 Alkyl hydroperoxide re 38.1 1.1E+02 0.0023 24.9 5.5 64 70-137 87-184 (211)
417 TIGR02200 GlrX_actino Glutared 37.4 1.2E+02 0.0027 20.1 7.0 69 184-261 2-76 (77)
418 cd03056 GST_N_4 GST_N family, 37.4 1.2E+02 0.0026 19.9 5.5 52 78-133 2-57 (73)
419 COG3411 Ferredoxin [Energy pro 37.2 94 0.002 20.7 4.3 33 314-350 17-50 (64)
420 COG3592 Uncharacterized conser 36.0 37 0.00079 22.8 2.2 34 319-352 38-72 (74)
421 PRK00366 ispG 4-hydroxy-3-meth 35.4 50 0.0011 30.4 3.8 75 85-159 271-356 (360)
422 PLN02399 phospholipid hydroper 34.6 3.1E+02 0.0067 23.9 13.0 34 314-347 201-235 (236)
423 cd03030 GRX_SH3BGR Glutaredoxi 33.0 1.9E+02 0.0041 20.9 6.0 52 81-132 5-65 (92)
424 KOG1364 Predicted ubiquitin re 31.3 68 0.0015 29.3 3.9 57 106-162 133-191 (356)
425 TIGR02652 conserved hypothetic 30.5 18 0.00039 28.1 0.2 69 84-177 11-83 (163)
426 COG3011 Predicted thiol-disulf 30.4 2.6E+02 0.0057 22.0 6.5 64 73-138 6-71 (137)
427 PF09654 DUF2396: Protein of u 30.4 18 0.00038 28.1 0.1 70 84-178 8-81 (161)
428 COG1930 CbiN ABC-type cobalt t 30.1 2.1E+02 0.0046 20.6 6.5 37 72-111 48-84 (97)
429 PRK10877 protein disulfide iso 30.0 79 0.0017 27.4 4.1 42 215-264 190-231 (232)
430 PF04312 DUF460: Protein of un 29.4 73 0.0016 25.0 3.3 57 306-364 34-95 (138)
431 TIGR00612 ispG_gcpE 1-hydroxy- 28.2 40 0.00088 30.7 2.0 71 73-145 255-334 (346)
432 PF03190 Thioredox_DsbH: Prote 28.0 2.1E+02 0.0046 23.2 5.9 85 154-241 10-113 (163)
433 PF09673 TrbC_Ftype: Type-F co 27.4 2.7E+02 0.0059 20.9 6.8 26 211-239 55-80 (113)
434 COG1393 ArsC Arsenate reductas 27.3 78 0.0017 24.1 3.2 21 77-97 3-23 (117)
435 TIGR00014 arsC arsenate reduct 27.1 87 0.0019 23.6 3.4 32 78-115 2-33 (114)
436 PF13743 Thioredoxin_5: Thiore 27.0 49 0.0011 27.2 2.2 96 144-255 77-173 (176)
437 KOG2501 Thioredoxin, nucleored 26.3 1.6E+02 0.0034 23.8 4.8 30 209-241 97-126 (157)
438 cd03017 PRX_BCP Peroxiredoxin 26.3 2.9E+02 0.0064 21.0 7.6 50 208-257 81-136 (140)
439 KOG3414 Component of the U4/U6 26.0 3.1E+02 0.0068 21.2 7.3 73 165-240 6-87 (142)
440 cd03061 GST_N_CLIC GST_N famil 25.9 2.6E+02 0.0056 20.2 8.0 67 82-161 19-87 (91)
441 cd03015 PRX_Typ2cys Peroxiredo 25.7 2.7E+02 0.0059 22.5 6.5 55 209-263 95-156 (173)
442 PRK13190 putative peroxiredoxi 25.5 2.5E+02 0.0055 23.6 6.3 55 209-263 92-153 (202)
443 cd03021 DsbA_GSTK DsbA family, 25.1 1.1E+02 0.0023 25.9 4.0 39 118-156 170-208 (209)
444 PRK10081 entericidin B membran 24.1 97 0.0021 19.3 2.5 8 1-8 1-8 (48)
445 cd03034 ArsC_ArsC Arsenate Red 24.1 81 0.0018 23.6 2.7 32 78-115 2-33 (112)
446 KOG4498 Uncharacterized conser 23.8 1.5E+02 0.0033 24.6 4.3 45 68-112 46-91 (197)
447 COG0295 Cdd Cytidine deaminase 23.4 49 0.0011 25.9 1.4 14 83-96 86-99 (134)
448 PHA02291 hypothetical protein 22.8 90 0.0019 23.0 2.5 22 1-22 1-22 (132)
449 PF09695 YtfJ_HI0045: Bacteria 22.7 1.4E+02 0.0031 24.1 3.9 43 304-347 116-159 (160)
450 PF10281 Ish1: Putative stress 22.7 90 0.002 18.1 2.2 22 250-271 3-24 (38)
451 PRK13617 psbV cytochrome c-550 22.5 51 0.0011 26.9 1.4 32 50-89 43-74 (170)
452 COG3117 Uncharacterized protei 21.8 2.5E+02 0.0055 23.3 5.3 7 74-80 80-86 (188)
453 KOG3196 NADH:ubiquinone oxidor 20.5 1.3E+02 0.0028 25.1 3.3 38 314-357 167-212 (233)
454 PRK09810 entericidin A; Provis 20.5 1.2E+02 0.0025 18.3 2.3 7 1-7 1-7 (41)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-52 Score=382.00 Aligned_cols=319 Identities=30% Similarity=0.471 Sum_probs=283.3
Q ss_pred cCCCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC---CcEEEEEeCcCcHHHHHHcCCCCCcE
Q 017071 54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPT 130 (378)
Q Consensus 54 ~~~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt 130 (378)
....|+.|+.++|+..+..+..++|.||||||+||++++|+++++|..+.. .+.+++|||+++.++|.+|+|+||||
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 456899999999999999999999999999999999999999999999987 79999999999999999999999999
Q ss_pred EEEEeCCeEeeeeeCCCCHHHHHHHHHHHhcCCcccCCCHHHHHHhhccCCeEEEEEEcCCCCccHHHHHHHhccCCcee
Q 017071 131 LYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVN 210 (378)
Q Consensus 131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a~~~~~~~ 210 (378)
+.+|++|+....|.|+++.+.|..|+.+..++++..+.+.++++.++.+.+..+|+||.+..+.....+..++.+++++.
T Consensus 103 lkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~ 182 (493)
T KOG0190|consen 103 LKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDYK 182 (493)
T ss_pred EEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccccce
Confidence 99999997679999999999999999999999999999999999999999999999999888877444455669999999
Q ss_pred EEEEccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhcCCCceEEecccchhhhhccchH-HH--
Q 017071 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QL-- 287 (378)
Q Consensus 211 f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~P~~~~l~~~~~~~~~~~~~~-~l-- 287 (378)
|+++++.+++++++++... .+.+++++..++....|.|+++.+.|.+||..+++|++.++|.++...++.+..+ ++
T Consensus 183 F~~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~ 261 (493)
T KOG0190|consen 183 FAHTSDSDVAKKLELNTEG-TFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDF 261 (493)
T ss_pred eeccCcHhHHhhccCCCCC-cceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeE
Confidence 9999999999999997422 4559999999889999999999999999999999999999999888887777443 11
Q ss_pred ---------------------------HHHhhhcCcchhhhhhHhhcCCCCCCCc-EEEEEcCCCccccCCC-CCCHHHH
Q 017071 288 ---------------------------LHVYVEMNSEGVGRRVSQEFGVSGNAPR-VIAYSARDAKKYVLNG-ELTLSSI 338 (378)
Q Consensus 288 ---------------------------~f~~~d~~~~~~~~~l~~~~gi~~~~~p-~i~i~~~~~~~y~~~~-~~~~~~i 338 (378)
+|+++ |.+.+++ .++.||+.....| .+++.+..+.+|.+++ +++.++|
T Consensus 262 ~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~--d~e~~~~-~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~i 338 (493)
T KOG0190|consen 262 FVFFKCNRFEELRKKFEEVAKKFKGKLRFILI--DPESFAR-VLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENI 338 (493)
T ss_pred EeccccccHHHHHHHHHHHHHhcccceEEEEE--ChHHhhH-HHHhcCcccccCCeeEEeeccccccccCccccccHHHH
Confidence 45555 5556555 6799999877777 4445545889999987 5999999
Q ss_pred HHHHHHHhcCce--eeeccCCchh-----hhccCCccccceeeec
Q 017071 339 KSFGEEFLEDKL--LNQSDQISET-----ILKLPSQSRASYQLRT 376 (378)
Q Consensus 339 ~~Fi~~~~~Gkl--~~kSe~~p~~-----~~~~v~~~~~~~~~~~ 376 (378)
+.|+.++++|++ ++||||+|++ ++.+||+||++++++-
T Consensus 339 e~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de 383 (493)
T KOG0190|consen 339 ESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDE 383 (493)
T ss_pred HHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhcc
Confidence 999999999999 9999999998 6678999999999874
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=1.2e-41 Score=329.04 Aligned_cols=303 Identities=22% Similarity=0.371 Sum_probs=253.9
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC---CcEEEEEeCcCcHHHHHHcCCCCCcEEE
Q 017071 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLY 132 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (378)
..+.+++.++|+..+.++++++|.|||+||++|+++.|.|+++++.+.+ ++.++.|||+++.++|++|+|.++||++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 4688999999999998899999999999999999999999999988754 6999999999999999999999999999
Q ss_pred EEeCCeEeeeeeCCCCHHHHHHHHHHHhcCCcccCCCHHHHHHhhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCceeE
Q 017071 133 LFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNF 211 (378)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f 211 (378)
+|++|+.. +|.|.++.+.|.+|+.+.+++++..+.+.+++..+.....+.+++++...++...+.|.++| .+++.+.|
T Consensus 112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F 190 (477)
T PTZ00102 112 FFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKF 190 (477)
T ss_pred EEECCceE-EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceE
Confidence 99988665 99999999999999999999999999999888887777778888888877778889999888 67777888
Q ss_pred EEEccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhcCCCceEEecccchhhhhccchHHH----
Q 017071 212 YQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQL---- 287 (378)
Q Consensus 212 ~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~P~~~~l~~~~~~~~~~~~~~~l---- 287 (378)
+...+. + .+.+.+++..+.....|.| .+.++|.+||+.+.+|++.+++.+++..++..+.+.+
T Consensus 191 ~~~~~~--------~----~~~~~~~~~~~~~~~~~~~-~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (477)
T PTZ00102 191 FVKKHE--------G----KNKIYVLHKDEEGVELFMG-KTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCG 257 (477)
T ss_pred EEEcCC--------C----CCcEEEEecCCCCcccCCC-CCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEec
Confidence 876432 2 3778888876544444444 5889999999999999999999999988776655311
Q ss_pred -----------------------HHHhhhcCcchhhhhhHhhcCCCCCCCcEEEEEcCCCccccCCCC----CCHHHHHH
Q 017071 288 -----------------------LHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGE----LTLSSIKS 340 (378)
Q Consensus 288 -----------------------~f~~~d~~~~~~~~~l~~~~gi~~~~~p~i~i~~~~~~~y~~~~~----~~~~~i~~ 340 (378)
.|+++|.+ .+..++++.+|+.. .|++++.+..+ +|.+++. ++.++|.+
T Consensus 258 ~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~--~~~~~~~~~~gi~~--~P~~~i~~~~~-~y~~~~~~~~~~~~~~l~~ 332 (477)
T PTZ00102 258 TTEDYDKYKSVVRKVARKLREKYAFVWLDTE--QFGSHAKEHLLIEE--FPGLAYQSPAG-RYLLPPAKESFDSVEALIE 332 (477)
T ss_pred CHHHHHHHHHHHHHHHHhccCceEEEEEech--hcchhHHHhcCccc--CceEEEEcCCc-ccCCCccccccCCHHHHHH
Confidence 34444443 33345678999975 79998887544 5666543 78999999
Q ss_pred HHHHHhcCce--eeeccCCchh----hhccCCccccceeeecC
Q 017071 341 FGEEFLEDKL--LNQSDQISET----ILKLPSQSRASYQLRTH 377 (378)
Q Consensus 341 Fi~~~~~Gkl--~~kSe~~p~~----~~~~v~~~~~~~~~~~~ 377 (378)
|++++.+|++ +++|||+|+. +.+++|+||++++++..
T Consensus 333 Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~ 375 (477)
T PTZ00102 333 FFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSD 375 (477)
T ss_pred HHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCC
Confidence 9999999999 9999999986 88999999999887653
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=1.2e-41 Score=328.10 Aligned_cols=312 Identities=26% Similarity=0.414 Sum_probs=265.8
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC---CcEEEEEeCcCcHHHHHHcCCCCCcEEEE
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 133 (378)
.+..++.++|+..+.++++++|.|||+||++|+++.|.+.++++.+.+ ++.|+.|||++++++|++|+|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 578899999999999999999999999999999999999999998865 49999999999999999999999999999
Q ss_pred EeCCeE-eeeeeCCCCHHHHHHHHHHHhcCCcccCCCHHHHHHhhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCcee-
Q 017071 134 FVAGVR-QFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVN- 210 (378)
Q Consensus 134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~- 210 (378)
|++|+. +.+|.|.++.+.|.+|+.+.+++++..+++.++++.++..++..+|+|+.+..++....|.++| .+...+.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~ 161 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF 161 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence 999976 7899999999999999999999999999999999999999999999999887778889999988 5556665
Q ss_pred EEEEccHHHHhhcCCCCCCCCCeEEEeecCCCCc--cccCCCC--CHHHHHHHHHhcCCCceEEecccchhhhhccchHH
Q 017071 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKA--TPFRHQF--TRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQ 286 (378)
Q Consensus 211 f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~--~~y~g~~--~~~~l~~fi~~~~~P~~~~l~~~~~~~~~~~~~~~ 286 (378)
|+.+.+..+.+.++... +++++++..+... ..|.|+. +.++|.+||+.+++|++.+++.+++..++..+ +.
T Consensus 162 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~ 236 (462)
T TIGR01130 162 FAHSSDVAAFAKLGAFP----DSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PL 236 (462)
T ss_pred EEecCCHHHHhhcCCCC----CcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-Cc
Confidence 55667778888888764 7788887654333 4677775 55899999999999999999999888777664 31
Q ss_pred H--------------------------------HHHhhhcCcchhhhhhHhhcCCCCCCCcEEEEEcCCC-ccccCCC-C
Q 017071 287 L--------------------------------LHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA-KKYVLNG-E 332 (378)
Q Consensus 287 l--------------------------------~f~~~d~~~~~~~~~l~~~~gi~~~~~p~i~i~~~~~-~~y~~~~-~ 332 (378)
+ .|.++ +... ..++++.+|++....|.++|.+..+ .+|.+.+ .
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~--d~~~-~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~ 313 (462)
T TIGR01130 237 VVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVA--DEED-FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEE 313 (462)
T ss_pred eeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEe--cHHH-hHHHHHHcCCCccCCceEEEEeCCcccccCCCcCC
Confidence 1 01111 2223 2356788999877799999998854 7888877 8
Q ss_pred CCHHHHHHHHHHHhcCce--eeeccCCchh----hhccCCccccceeeec
Q 017071 333 LTLSSIKSFGEEFLEDKL--LNQSDQISET----ILKLPSQSRASYQLRT 376 (378)
Q Consensus 333 ~~~~~i~~Fi~~~~~Gkl--~~kSe~~p~~----~~~~v~~~~~~~~~~~ 376 (378)
++.++|.+|++++++|++ +++|||+|++ +.+++|+||++++++.
T Consensus 314 ~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~ 363 (462)
T TIGR01130 314 FSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDE 363 (462)
T ss_pred CCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccC
Confidence 999999999999999999 8999999994 8899999999988764
No 4
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=1.2e-38 Score=268.25 Aligned_cols=283 Identities=21% Similarity=0.328 Sum_probs=238.0
Q ss_pred cChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-----CcEEEEEeCcCcHHHHHHcCCCCCcEEEEEe
Q 017071 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-----EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (378)
Q Consensus 61 l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-----~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (378)
++.+|++.++...+.++|+|||+||+.++.++|.|+++|+.++. +++++.|||+.+..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 35678899998999999999999999999999999999988764 7999999999999999999999999999999
Q ss_pred CCeEee-eeeCCCCHHHHHHHHHHHhcCCcccCCCHHHHHHhhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCceeEEE
Q 017071 136 AGVRQF-QFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQ 213 (378)
Q Consensus 136 ~g~~~~-~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~ 213 (378)
+|.... .|.|.++.+.|.+||++++..++.+..+.++++......+..+|++|.+.+++++..+..+| -+++++.|.+
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V 160 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLV 160 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEe
Confidence 997665 89999999999999999999999999999999999887888999999999999999999988 6789999987
Q ss_pred EccHHHHhhcCCCCCCCCCeEEEeecCC-CCccccCCCCC-HHHHHHHHHhcCCCceEEecccchhhhhccchHHH----
Q 017071 214 TTSADVAEFFHIHPKSKRPALIFLHLEA-GKATPFRHQFT-RLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQL---- 287 (378)
Q Consensus 214 ~~~~~~~~~~~i~~~~~~P~i~~~~~~~-~~~~~y~g~~~-~~~l~~fi~~~~~P~~~~l~~~~~~~~~~~~~~~l---- 287 (378)
...... ..-.-. +.+ +++|+++. .....|.|+++ .+.+..||.+.+.|+|+|+|-+|..++.+.|.|.+
T Consensus 161 ~~gD~~-~~~~~~---~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~ 235 (375)
T KOG0912|consen 161 GFGDLL-KPHEPP---GKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFR 235 (375)
T ss_pred eccccc-cCCCCC---CCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEe
Confidence 654221 111111 123 55566543 23337999975 59999999999999999999999999999999843
Q ss_pred ------------------------HHHhhhcCcchhhhhhHhhcCCCCCCCcEEEEEcCCCccccCCC---CCCHHHHHH
Q 017071 288 ------------------------LHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNG---ELTLSSIKS 340 (378)
Q Consensus 288 ------------------------~f~~~d~~~~~~~~~l~~~~gi~~~~~p~i~i~~~~~~~y~~~~---~~~~~~i~~ 340 (378)
.+..+.+++..|.+.| .++|-+++++|+++|... .+.|.++. -..+..|.+
T Consensus 236 ~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL-~HlgKs~~DLPviaIDsF-~Hmylfp~f~di~~pGkLkq 313 (375)
T KOG0912|consen 236 KKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPL-RHLGKSPDDLPVIAIDSF-RHMYLFPDFNDINIPGKLKQ 313 (375)
T ss_pred cCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchH-HHhCCCcccCcEEEeecc-ceeeecCchhhhcCccHHHH
Confidence 2334445666766675 899999999999999877 56676653 556679999
Q ss_pred HHHHHhcCce
Q 017071 341 FGEEFLEDKL 350 (378)
Q Consensus 341 Fi~~~~~Gkl 350 (378)
|+.|+.+||+
T Consensus 314 Fv~DL~sgkl 323 (375)
T KOG0912|consen 314 FVADLHSGKL 323 (375)
T ss_pred HHHHHhCchh
Confidence 9999999999
No 5
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.97 E-value=6.2e-30 Score=220.48 Aligned_cols=290 Identities=17% Similarity=0.249 Sum_probs=216.7
Q ss_pred CCCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhh-----HH-HHHHHHHHhcC-CcEEEEEeCcCcHHHHHHcCCCC
Q 017071 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKL-----AP-EFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILA 127 (378)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~-----~p-~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~ 127 (378)
...|++||.+||++++.+.+..+|+|+.|--..-... .. .++-+|+.+.. ++.|+.||..++..+++++|+..
T Consensus 33 kDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E 112 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE 112 (383)
T ss_dssp S--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S
T ss_pred ccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc
Confidence 4589999999999999999999999998874332221 12 23444555554 89999999999999999999999
Q ss_pred CcEEEEEeCCeEeeeeeCCCCHHHHHHHHHHHhcCCcccCCCHHHHHHhhcc-CCeEEEEEEcCCCCccHHHHHHHh-cc
Q 017071 128 YPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEELAAAS-KL 205 (378)
Q Consensus 128 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~~~~~~a-~~ 205 (378)
.+++++|++| .+..|.|.++++.|+.||...+..+|..|.+..+++.|-+. ..+.+|+||.+..+..+..|..+| .+
T Consensus 113 ~~SiyVfkd~-~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~F 191 (383)
T PF01216_consen 113 EGSIYVFKDG-EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEHF 191 (383)
T ss_dssp TTEEEEEETT-EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHHC
T ss_pred cCcEEEEECC-cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHhh
Confidence 9999999999 77899999999999999999999999999999999988874 479999999998888999999999 78
Q ss_pred CCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCC-CCHHHHHHHHHhcCCCceEEecccchhhhhccch
Q 017071 206 HSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPR 284 (378)
Q Consensus 206 ~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~-~~~~~l~~fi~~~~~P~~~~l~~~~~~~~~~~~~ 284 (378)
+..++|++|.++.++++++++ ...+-+|++..+.++...|. .+.++|.+||+.|..|.++.++.+++...+....
T Consensus 192 ~p~IkFfAtfd~~vAk~L~lK----~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~ 267 (383)
T PF01216_consen 192 QPYIKFFATFDKKVAKKLGLK----LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDI 267 (383)
T ss_dssp TTTSEEEEE-SHHHHHHHT-S----TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSS
T ss_pred cCceeEEEEecchhhhhcCcc----ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccC
Confidence 899999999999999999997 58899999998899999876 6789999999999999999999999888777654
Q ss_pred H--HH-------------------------------HHHhhhcCcchhh-hhhHhhcCCCCCCCcEEEEEcC---CCccc
Q 017071 285 K--QL-------------------------------LHVYVEMNSEGVG-RRVSQEFGVSGNAPRVIAYSAR---DAKKY 327 (378)
Q Consensus 285 ~--~l-------------------------------~f~~~d~~~~~~~-~~l~~~~gi~~~~~p~i~i~~~---~~~~y 327 (378)
. ++ .++|+|.+....- ....+.|||+-. .|+|.+.|. .+.|+
T Consensus 268 ~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIGvVnvtdadsvW~ 346 (383)
T PF01216_consen 268 DGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIGVVNVTDADSVWM 346 (383)
T ss_dssp SSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEEEEETTTSEEEEC
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCceeEEeccccccchh
Confidence 3 11 5677777765322 223578999876 599999998 44677
Q ss_pred cCCC---CCCHHHHHHHHHHHhcCce
Q 017071 328 VLNG---ELTLSSIKSFGEEFLEDKL 350 (378)
Q Consensus 328 ~~~~---~~~~~~i~~Fi~~~~~Gkl 350 (378)
.+++ .-|.+.++.||+++++|++
T Consensus 347 dm~d~~d~pt~~~LedWieDVlsg~i 372 (383)
T PF01216_consen 347 DMDDDDDLPTAEELEDWIEDVLSGKI 372 (383)
T ss_dssp -STTTSS---HHHHHHHHHHHHCTCC
T ss_pred ccCCcccCCcHHHHHHHHHHHhcCCC
Confidence 7764 3588999999999999998
No 6
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.97 E-value=1.3e-31 Score=225.65 Aligned_cols=264 Identities=17% Similarity=0.215 Sum_probs=198.8
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC---CcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCC
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGER 147 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~ 147 (378)
.....|+|.||||||+||+++.|.|+++..++++ .+.++++||+..+.++.+|||+||||+.+|++| ....|.|.+
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd-~a~dYRG~R 119 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD-HAIDYRGGR 119 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC-eeeecCCCc
Confidence 3567899999999999999999999999888877 799999999999999999999999999999998 788999999
Q ss_pred CHHHHHHHHHHHhcCCcccCCC-HHHHHHhhccCCeEEEEEEcCCCCccHHHHHHHhccCCceeEEEEccHHHHhhcC-C
Q 017071 148 TRDVISAWVREKMTLGTYSITT-TDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFH-I 225 (378)
Q Consensus 148 ~~~~l~~~i~~~~~~~~~~i~~-~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~-i 225 (378)
+.+.|.+|..+..++-+..|.+ ..++..+...+.+.+| |+....+|....|..+|.-.-.+......+++++..++ .
T Consensus 120 ~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffV-f~Gtge~PL~d~fidAASe~~~~a~FfSaseeVaPe~~~~ 198 (468)
T KOG4277|consen 120 EKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFV-FFGTGEGPLFDAFIDAASEKFSVARFFSASEEVAPEENDA 198 (468)
T ss_pred cHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEE-EEeCCCCcHHHHHHHHhhhheeeeeeeccccccCCcccch
Confidence 9999999999999888877765 3344455555666666 66666889999999988544444433344445555443 3
Q ss_pred CCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhcCCCceEEecccchhhhhccchH-HH-----------------
Q 017071 226 HPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QL----------------- 287 (378)
Q Consensus 226 ~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~P~~~~l~~~~~~~~~~~~~~-~l----------------- 287 (378)
+. .|++.+|+++ .+..|. +.+.++|.+||+..++|.+-..+..++..+-.+++. .|
T Consensus 199 ke---mpaV~VFKDe--tf~i~d-e~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~ 272 (468)
T KOG4277|consen 199 KE---MPAVAVFKDE--TFEIED-EGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHRE 272 (468)
T ss_pred hh---ccceEEEccc--eeEEEe-cCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHH
Confidence 33 7999999976 444443 235689999999999999888888777776655543 11
Q ss_pred --------------------HHHhhhcCcchhhhhhHhhcCCCCCCCcEEEEEcCCCccccCC----CCCCHHHHHHHHH
Q 017071 288 --------------------LHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLN----GELTLSSIKSFGE 343 (378)
Q Consensus 288 --------------------~f~~~d~~~~~~~~~l~~~~gi~~~~~p~i~i~~~~~~~y~~~----~~~~~~~i~~Fi~ 343 (378)
.|.+...++.++... +.++.-..|.+.|+|.+++.|.+. +..+.++|.+||+
T Consensus 273 ~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nq----ilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqFie 348 (468)
T KOG4277|consen 273 FHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQ----ILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFIE 348 (468)
T ss_pred HHHHHHHHHHHHHhChhhhhhceeeccchhHHHHH----HHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHHHh
Confidence 333444444443333 333333459999999977666653 2578899999999
Q ss_pred HHh
Q 017071 344 EFL 346 (378)
Q Consensus 344 ~~~ 346 (378)
+-.
T Consensus 349 nts 351 (468)
T KOG4277|consen 349 NTS 351 (468)
T ss_pred ccc
Confidence 833
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=4e-25 Score=168.06 Aligned_cols=102 Identities=17% Similarity=0.311 Sum_probs=95.4
Q ss_pred CCCcEEcChhcHHHH---hcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHH-HHcCCCCCcE
Q 017071 55 AKDVVSLNGKNFSEF---MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA-KEYNILAYPT 130 (378)
Q Consensus 55 ~~~v~~l~~~~~~~~---~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~v~~~Pt 130 (378)
.+.|++|++++|++. +.++++++|.||||||++|+.++|.|+++++++++.+.|++|||+++.++| ++|+|.++||
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 467999999999986 578999999999999999999999999999999888999999999999999 5899999999
Q ss_pred EEEEeCCeEeeeeeCCCCHHHHHHHH
Q 017071 131 LYLFVAGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 131 ~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (378)
+++|++|+...+|.|.++.+.|..|+
T Consensus 88 l~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 88 IHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999998889999999999998873
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=2.9e-24 Score=162.29 Aligned_cols=99 Identities=23% Similarity=0.524 Sum_probs=94.5
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeC
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 136 (378)
.+++++.++|++.+.++++++|.|||+||++|+++.|.|+++++++++.+.|+.|||++++.+|++++|+++||+++|++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 57889999999999888999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEeeeeeCCCCHHHHHHH
Q 017071 137 GVRQFQFFGERTRDVISAW 155 (378)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~ 155 (378)
|+...+|.|.++.+.|.+|
T Consensus 82 g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 82 GMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCcccCCCCCCHHHHHhh
Confidence 9888999999999999887
No 9
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.3e-24 Score=165.34 Aligned_cols=106 Identities=24% Similarity=0.408 Sum_probs=98.9
Q ss_pred CCcEEcChhcHHH-HhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEE
Q 017071 56 KDVVSLNGKNFSE-FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (378)
Q Consensus 56 ~~v~~l~~~~~~~-~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (378)
..+..++..+|+. .++++.||+|+|||+||+||+.+.|.+++++.+|.+++.+++||.|++.+++.+|+|..+||+++|
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 3556678889985 458899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEeeeeeCCCCHHHHHHHHHHHhc
Q 017071 135 VAGVRQFQFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (378)
+||+...++.|..+.+.+.++|++.+.
T Consensus 123 knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 123 KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999999999998763
No 10
>PRK10996 thioredoxin 2; Provisional
Probab=99.91 E-value=4.2e-23 Score=164.39 Aligned_cols=134 Identities=22% Similarity=0.404 Sum_probs=123.3
Q ss_pred CCCccccCCChhhhhhhccCCCCCCCcccCCCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCC
Q 017071 26 TQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE 105 (378)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~ 105 (378)
..+|+..+++|.......+.|+.......+..+++++.++|+..+.++++++|+|||+||++|+.+.|.+.++++++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~ 84 (139)
T PRK10996 5 CTSCQAINRLPDERIEDAAKCGRCGHDLFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK 84 (139)
T ss_pred CCCCCCcCCCCCccccCCCcCCCCCCccCCCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35677788889888888888988766666778899999999999988999999999999999999999999999998889
Q ss_pred cEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHHHH
Q 017071 106 ADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 106 ~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
+.++.||++++++++++|+|+++||+++|++|+.+.++.|..+.+.+.+|+.+.
T Consensus 85 v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 85 VRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred eEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999875
No 11
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.90 E-value=1.1e-22 Score=154.29 Aligned_cols=102 Identities=28% Similarity=0.566 Sum_probs=97.5
Q ss_pred cEEcChhcHHHHhcC-CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeC
Q 017071 58 VVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (378)
Q Consensus 58 v~~l~~~~~~~~~~~-~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 136 (378)
|..+|+++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+++++.|+.||+++++.+|++|+|.++||++++++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 467899999999976 8999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CeEeeeeeCCCCHHHHHHHHHHH
Q 017071 137 GVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
|+...+|.|.++.+.|.+||+++
T Consensus 81 g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999999999999874
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.90 E-value=3.6e-23 Score=157.23 Aligned_cols=100 Identities=31% Similarity=0.544 Sum_probs=92.6
Q ss_pred CcEEcChhcHHHHh-cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEe
Q 017071 57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (378)
Q Consensus 57 ~v~~l~~~~~~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (378)
.+++++.++|++.+ .++++++|.|||+||++|+.+.|.|+++++++++.+.++.|||++++++|++|+|+++||+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence 56789999999876 56789999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC-eEeeeeeCCCC-HHHHHHHH
Q 017071 136 AG-VRQFQFFGERT-RDVISAWV 156 (378)
Q Consensus 136 ~g-~~~~~~~g~~~-~~~l~~~i 156 (378)
+| +...+|.|..+ .++|.+||
T Consensus 82 ~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 82 GNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCCceEccCCCCCHHHHHhhC
Confidence 77 88999999987 99998885
No 13
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.90 E-value=5.5e-23 Score=157.20 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=94.7
Q ss_pred CCCcEEcChhcHHHHh-cCCCcEEEEEecCCChh--HH--hhHHHHHHHHHHh--cCCcEEEEEeCcCcHHHHHHcCCCC
Q 017071 55 AKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYW--SK--KLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNILA 127 (378)
Q Consensus 55 ~~~v~~l~~~~~~~~~-~~~~~~lv~F~a~wC~~--C~--~~~p~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~v~~ 127 (378)
...+..||++||++.+ ..+.++++.|||+||++ |+ .+.|.+.++++++ ++++.|++||+++++++|++|||++
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 3578899999999877 45568899999999976 99 8899999999888 7789999999999999999999999
Q ss_pred CcEEEEEeCCeEeeeeeCCCCHHHHHHHHHHHh
Q 017071 128 YPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 128 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (378)
+||+++|++|+.+. |.|.++.+.|.+||.+++
T Consensus 88 iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999998765 999999999999999765
No 14
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.90 E-value=5.8e-23 Score=157.06 Aligned_cols=100 Identities=35% Similarity=0.621 Sum_probs=92.3
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC------CcEEEEEeCcCcHHHHHHcCCCCCcE
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG------EADLVMVDAYLEKDLAKEYNILAYPT 130 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~------~~~~~~vd~~~~~~~~~~~~v~~~Pt 130 (378)
.++.+++++|++.+..+++++|.||||||++|+++.|.|+++++.+++ .+.++.|||++++++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 678899999999998889999999999999999999999999987642 48999999999999999999999999
Q ss_pred EEEEeCCe-EeeeeeCCCCHHHHHHHH
Q 017071 131 LYLFVAGV-RQFQFFGERTRDVISAWV 156 (378)
Q Consensus 131 ~~~~~~g~-~~~~~~g~~~~~~l~~~i 156 (378)
+++|++|+ ....|.|.++.+.|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999997 458899999999999885
No 15
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.5e-22 Score=184.86 Aligned_cols=198 Identities=23% Similarity=0.390 Sum_probs=160.9
Q ss_pred HHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeC
Q 017071 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG 145 (378)
Q Consensus 66 ~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g 145 (378)
+......+++++|.||||||++|+++.|.|.++++.+++.+.++.|||+++.++|++|+|+++||+.+|..|.....|.|
T Consensus 40 ~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~ 119 (383)
T KOG0191|consen 40 FDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSG 119 (383)
T ss_pred HHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccC
Confidence 34555788999999999999999999999999999999899999999999999999999999999999998867889999
Q ss_pred CCCHHHHHHHHHHHhcCCcccCC-------CHHHHHHh-hccCCeEEEEEEcCCCCcc---HHHHHHHhc-c--CCceeE
Q 017071 146 ERTRDVISAWVREKMTLGTYSIT-------TTDEAERI-LTVESKLVLGFLHDLEGME---SEELAAASK-L--HSDVNF 211 (378)
Q Consensus 146 ~~~~~~l~~~i~~~~~~~~~~i~-------~~~~~~~~-~~~~~~~~v~f~~~~~~~~---~~~~~~~a~-~--~~~~~f 211 (378)
..+.+.+..|+.+.+.+.+.... +..++... .+.+..++|.||.+||.+. ...+..++. + ...+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~ 199 (383)
T KOG0191|consen 120 PRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVEL 199 (383)
T ss_pred cccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEE
Confidence 99999999999998865543332 12334333 3456789999999999853 345666663 3 345555
Q ss_pred EEE---ccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhcCCC
Q 017071 212 YQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHP 266 (378)
Q Consensus 212 ~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~P 266 (378)
+.. ....++.++++.. +|++.+|++++.....|.|.++.+.|.+|+++..-+
T Consensus 200 ~~~d~~~~~~~~~~~~v~~---~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 200 GKIDATVHKSLASRLEVRG---YPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred EeeccchHHHHhhhhcccC---CceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 544 3778999999987 999999998864356667889999999999987655
No 16
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.9e-23 Score=174.64 Aligned_cols=107 Identities=23% Similarity=0.423 Sum_probs=101.2
Q ss_pred CCcEEcChhcHHHHh---cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEE
Q 017071 56 KDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~---~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (378)
..++++|+.||...+ ...+||+|+||||||++|+++.|.+++++.+|++++.+++||||+++.++.+|||+++||++
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 459999999999766 34569999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEeeeeeCCCCHHHHHHHHHHHhcC
Q 017071 133 LFVAGVRQFQFFGERTRDVISAWVREKMTL 162 (378)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~ 162 (378)
+|.+|+.+..|.|....+.+.+|+.+.++.
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999999999999999999865
No 17
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.89 E-value=3.1e-21 Score=165.74 Aligned_cols=182 Identities=12% Similarity=0.175 Sum_probs=139.1
Q ss_pred CCcEEEEEec---CCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEe-eeeeCCC
Q 017071 73 NRNVMVMFYA---NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ-FQFFGER 147 (378)
Q Consensus 73 ~~~~lv~F~a---~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~-~~~~g~~ 147 (378)
+...++.|++ +||++|+.+.|.++++++.+.+ .+.++.+|.+++++++++|+|.++||+++|++|+.. .++.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 4455667888 9999999999999999999864 456777777799999999999999999999999886 4899999
Q ss_pred CHHHHHHHHHHHhcC--CcccCCCHHHHHHhhccC-CeEEEEEEcCCCCccH---HHHHHHhccCCceeEEE---EccHH
Q 017071 148 TRDVISAWVREKMTL--GTYSITTTDEAERILTVE-SKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQ---TTSAD 218 (378)
Q Consensus 148 ~~~~l~~~i~~~~~~--~~~~i~~~~~~~~~~~~~-~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~---~~~~~ 218 (378)
+.+.+.+||+..++. ....+ +.+..+.+...+ +..++.|+++||++.. +.+..++...+++.+.. ..+++
T Consensus 99 ~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~ 177 (215)
T TIGR02187 99 AGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD 177 (215)
T ss_pred CHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH
Confidence 999999999988632 22333 333344443333 4556669999999743 34445554445666653 36788
Q ss_pred HHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHh
Q 017071 219 VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 219 ~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (378)
++++|++.. .|++++++.+. .+.|....+++.+||..
T Consensus 178 ~~~~~~V~~---vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 178 LAEKYGVMS---VPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHhCCcc---CCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 999999986 99999987542 27888888999999875
No 18
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.88 E-value=3.4e-22 Score=150.97 Aligned_cols=99 Identities=27% Similarity=0.503 Sum_probs=90.4
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcHHHHHHcCCCCCcEEEEEe
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (378)
.+++++.++|++.+. ++ ++|+|||+||++|+++.|.|+++++.+++ ++.++.|||++++.++++|+|.++||+++++
T Consensus 2 ~v~~l~~~~f~~~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 2 NVVELTDSNWTLVLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred ceEEcChhhHHHHhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 578899999998874 44 78999999999999999999999998765 7999999999999999999999999999999
Q ss_pred CCeEeeeeeCCCCHHHHHHHHHH
Q 017071 136 AGVRQFQFFGERTRDVISAWVRE 158 (378)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~ 158 (378)
+|+ ..+|.|.++.+.|.+|+++
T Consensus 80 ~g~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 80 DGV-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCC-EEEecCCCCHHHHHHHHhC
Confidence 996 5889999999999999863
No 19
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.88 E-value=9.6e-22 Score=167.04 Aligned_cols=106 Identities=35% Similarity=0.553 Sum_probs=97.6
Q ss_pred CCCcEEcChhcHHHHhcC-----CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCc
Q 017071 55 AKDVVSLNGKNFSEFMGK-----NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYP 129 (378)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~-----~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 129 (378)
...++++++++|++.+.. +++++|+|||+||++|+++.|.|+++++++++.+.++.+||+++++++++|+|+++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 357899999999987742 589999999999999999999999999999988999999999999999999999999
Q ss_pred EEEEEeCCeEeeeeeCCCCHHHHHHHHHHHh
Q 017071 130 TLYLFVAGVRQFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 130 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (378)
|+++|++|+....+.|.++.+.|.+|+.+..
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 9999999987777778899999999998876
No 20
>PHA02278 thioredoxin-like protein
Probab=99.88 E-value=6.9e-22 Score=147.82 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=84.8
Q ss_pred hhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc----HHHHHHcCCCCCcEEEEEeCCe
Q 017071 63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 63 ~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~ 138 (378)
.++|++.+.++++++|+|||+||++|+.+.|.++++++++..++.|+.||++.+ ++++++|+|.++||+++|++|+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence 467888888899999999999999999999999999988665678999999986 6899999999999999999999
Q ss_pred EeeeeeCCCCHHHHHHH
Q 017071 139 RQFQFFGERTRDVISAW 155 (378)
Q Consensus 139 ~~~~~~g~~~~~~l~~~ 155 (378)
.+.++.|..+.+.+.++
T Consensus 84 ~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 84 LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEeCCCCHHHHHhh
Confidence 99999999999888765
No 21
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.87 E-value=5.2e-22 Score=149.24 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=81.3
Q ss_pred hhcHHHHhc--CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEe
Q 017071 63 GKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (378)
Q Consensus 63 ~~~~~~~~~--~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 140 (378)
.++|+..+. .+++++|.|||+||++|+.+.|.++++++++++.+.|++||++++++++++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 456777774 578999999999999999999999999999987889999999999999999999999999999999999
Q ss_pred eeeeCCCCHHHH
Q 017071 141 FQFFGERTRDVI 152 (378)
Q Consensus 141 ~~~~g~~~~~~l 152 (378)
.+..|..+...|
T Consensus 82 ~~~~G~~~~~~~ 93 (114)
T cd02954 82 KIDLGTGNNNKI 93 (114)
T ss_pred EEEcCCCCCceE
Confidence 999887665544
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.87 E-value=9.7e-22 Score=150.57 Aligned_cols=100 Identities=17% Similarity=0.331 Sum_probs=91.0
Q ss_pred EEcChhcHHHHh---cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcHHHHHHcCCCCCcEEEEE
Q 017071 59 VSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (378)
Q Consensus 59 ~~l~~~~~~~~~---~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (378)
.+++.++|++.+ ..+++++|+||||||++|+.+.|.++++++++++ ++.++.|||++++.++++++|.++||+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 356778887544 3689999999999999999999999999999986 699999999999999999999999999999
Q ss_pred eCCeEeeeeeCCCCHHHHHHHHHH
Q 017071 135 VAGVRQFQFFGERTRDVISAWVRE 158 (378)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~ 158 (378)
++|+.+.++.|..+.+.|.+||++
T Consensus 87 ~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEEEEecCCCCHHHHHHHHhc
Confidence 999888899999999999999975
No 23
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.87 E-value=1e-21 Score=148.76 Aligned_cols=98 Identities=32% Similarity=0.619 Sum_probs=91.1
Q ss_pred cEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC---CcEEEEEeCcCcHHHHHHcCCCCCcEEEEE
Q 017071 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (378)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (378)
++.+++++|+..+..+ +++|+|||+||++|+.+.|.++++++++++ ++.++.|||+++..+|++|+|.++||+++|
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 5689999999998655 599999999999999999999999999976 799999999999999999999999999999
Q ss_pred eCCeEeeeeeCCCCHHHHHHHH
Q 017071 135 VAGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i 156 (378)
++|+.+.+|.|.++.+.|.+||
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 9998888999999999998875
No 24
>PRK09381 trxA thioredoxin; Provisional
Probab=99.87 E-value=3.7e-21 Score=147.42 Aligned_cols=105 Identities=21% Similarity=0.406 Sum_probs=97.8
Q ss_pred CCcEEcChhcHHHH-hcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEE
Q 017071 56 KDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (378)
Q Consensus 56 ~~v~~l~~~~~~~~-~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (378)
..++.+++++|++. +..+++++|+||++||++|+.+.|.++++++.+.+++.++.+|++.++.++++|+|.++||+++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 57889999999965 46689999999999999999999999999999988899999999999999999999999999999
Q ss_pred eCCeEeeeeeCCCCHHHHHHHHHHHh
Q 017071 135 VAGVRQFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (378)
++|+...++.|..+.+.|..+|...+
T Consensus 83 ~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999999999999999999998765
No 25
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.87 E-value=1.4e-21 Score=149.95 Aligned_cols=99 Identities=36% Similarity=0.589 Sum_probs=91.2
Q ss_pred cEEcChhcHHHHh-cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC--cHHHHHHcCCCCCcEEEEE
Q 017071 58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLF 134 (378)
Q Consensus 58 v~~l~~~~~~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~ 134 (378)
++++++++|++.+ ..+++++|.|||+||++|+++.|.++++++.+++.+.++.|||++ ++++|++|+|+++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 6789999999887 557789999999999999999999999999998889999999999 8899999999999999999
Q ss_pred eCCe-----EeeeeeCCCCHHHHHHHH
Q 017071 135 VAGV-----RQFQFFGERTRDVISAWV 156 (378)
Q Consensus 135 ~~g~-----~~~~~~g~~~~~~l~~~i 156 (378)
++|+ ....|.|.++.+.|.+||
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHh
Confidence 9774 467899999999999997
No 26
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.87 E-value=2.6e-21 Score=144.71 Aligned_cols=93 Identities=27% Similarity=0.409 Sum_probs=85.6
Q ss_pred cHHHHh-c-CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeee
Q 017071 65 NFSEFM-G-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQ 142 (378)
Q Consensus 65 ~~~~~~-~-~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 142 (378)
+|++.+ . ++++++|+|||+||++|+.+.|.++++++.+++.+.++.||+++++.++++|+|.++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 566656 3 36899999999999999999999999999998889999999999999999999999999999999988889
Q ss_pred eeCCCCHHHHHHHHH
Q 017071 143 FFGERTRDVISAWVR 157 (378)
Q Consensus 143 ~~g~~~~~~l~~~i~ 157 (378)
+.|..+.+.|..||.
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999999873
No 27
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.86 E-value=2e-21 Score=145.64 Aligned_cols=84 Identities=26% Similarity=0.626 Sum_probs=79.3
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCc-CcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCH
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR 149 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (378)
.++++++|+|||+||++|+.++|.|+++++.++ ++.++.||++ +++.++++|+|.++||+++|++| ...+|.|.++.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~ 93 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL 93 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence 578999999999999999999999999999997 5889999999 88999999999999999999999 88999999999
Q ss_pred HHHHHHH
Q 017071 150 DVISAWV 156 (378)
Q Consensus 150 ~~l~~~i 156 (378)
+.|.+|+
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9999885
No 28
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.86 E-value=8.1e-21 Score=143.47 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=81.9
Q ss_pred ChhcHHHHhc--CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH---HHHHHcCCCCCcEEEEEeC
Q 017071 62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK---DLAKEYNILAYPTLYLFVA 136 (378)
Q Consensus 62 ~~~~~~~~~~--~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~v~~~Pt~~~~~~ 136 (378)
+.++|++.+. ++++++|+|||+||++|+.++|.++++++++ .++.|+.||++++. +++++|+|.++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 3567777774 4899999999999999999999999999999 57999999999874 8999999999999999999
Q ss_pred CeEeeeeeCCCCHHHHHHHHH
Q 017071 137 GVRQFQFFGERTRDVISAWVR 157 (378)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~ 157 (378)
|+.+.++.|. ....|.+.+.
T Consensus 81 G~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 81 GEKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred CeEEEEEeCC-CHHHHHHHHH
Confidence 9999999995 4566666554
No 29
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.86 E-value=6.2e-21 Score=145.01 Aligned_cols=100 Identities=41% Similarity=0.703 Sum_probs=92.9
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhc--CCcEEEEEeCcC--cHHHHHHcCCCCCcEEE
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL--EKDLAKEYNILAYPTLY 132 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~ 132 (378)
+++.+++.+|+..+.++++++|+|||+||++|+++.|.++++++.++ +.+.++.+||++ ++.++++++|+++||++
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 1 DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred CeEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 36788999999999888999999999999999999999999999987 478999999998 99999999999999999
Q ss_pred EEeCCeEeeeeeCCCCHHHHHHHH
Q 017071 133 LFVAGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~l~~~i 156 (378)
++++|+.+.+|.|..+.+.+.+||
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999998889999999999998885
No 30
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.85 E-value=9.6e-21 Score=142.88 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=87.7
Q ss_pred cChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeE
Q 017071 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (378)
Q Consensus 61 l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 139 (378)
-+.++|+..+.++++++|+|||+||++|+.+.|.++++++.+++ .+.|+.+|++ +.+++++|+|+++||+++|++|+.
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence 36788888888899999999999999999999999999999986 5889999999 789999999999999999999999
Q ss_pred eeeeeCCCCHHHHHHHHHH
Q 017071 140 QFQFFGERTRDVISAWVRE 158 (378)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~ 158 (378)
+.+..|. +.+.+.++|.+
T Consensus 84 ~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 84 VAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred EEEEecC-ChHHHHHHHhh
Confidence 9999996 88889888865
No 31
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.85 E-value=1.1e-20 Score=143.35 Aligned_cols=100 Identities=38% Similarity=0.603 Sum_probs=91.6
Q ss_pred CcEEcChhcHHHHh-cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEe
Q 017071 57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (378)
Q Consensus 57 ~v~~l~~~~~~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (378)
++.++++++|++.+ ..+++++|.|||+||++|+++.|.|.++++++.+.+.++.+|++++++++++|+|+++|++++|+
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 80 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFG 80 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEEC
Confidence 36789999999887 44566999999999999999999999999999888999999999999999999999999999999
Q ss_pred CC-eEeeeeeCCCCHHHHHHHH
Q 017071 136 AG-VRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 136 ~g-~~~~~~~g~~~~~~l~~~i 156 (378)
+| +....|.|.++.+.|.+|+
T Consensus 81 ~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 81 AGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCcceeecCCCCCHHHHHHHh
Confidence 88 5677899999999999997
No 32
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.85 E-value=5.6e-21 Score=144.09 Aligned_cols=99 Identities=23% Similarity=0.375 Sum_probs=88.8
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEec--CCCh---hHHhhHHHHHHHHHHhcCCcEEEEEeC-----cCcHHHHHHcCCC
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYA--NWCY---WSKKLAPEFAAAAKMLKGEADLVMVDA-----YLEKDLAKEYNIL 126 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a--~wC~---~C~~~~p~~~~~~~~~~~~~~~~~vd~-----~~~~~~~~~~~v~ 126 (378)
.++.|+..||++.+.+++.+||.||| |||+ +|+++.|++.+.+. .+.+++||| .++.++|++|+|+
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence 57889999999999999999999999 9999 88888888877765 388999999 4678999999999
Q ss_pred --CCcEEEEEeCCe--EeeeeeCC-CCHHHHHHHHHHH
Q 017071 127 --AYPTLYLFVAGV--RQFQFFGE-RTRDVISAWVREK 159 (378)
Q Consensus 127 --~~Pt~~~~~~g~--~~~~~~g~-~~~~~l~~~i~~~ 159 (378)
+|||+++|++|. ....|.|. ++.+.|.+|+.+.
T Consensus 78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999884 45789997 9999999999875
No 33
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.85 E-value=1.2e-20 Score=142.84 Aligned_cols=99 Identities=40% Similarity=0.702 Sum_probs=92.3
Q ss_pred cChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCe
Q 017071 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 61 l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 138 (378)
|++++|++.+.++++++|+||++||++|+.+.|.++++++.+++ ++.++.+||++++.++++|+|+++|++++|++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 56788998888899999999999999999999999999999987 6999999999999999999999999999999776
Q ss_pred EeeeeeCCCCHHHHHHHHHHH
Q 017071 139 RQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~ 159 (378)
...+|.|..+.+.|..||.++
T Consensus 81 ~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 81 KPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cceeecCCCCHHHHHHHHHhc
Confidence 688999999999999999875
No 34
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.84 E-value=6.2e-20 Score=146.68 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=83.1
Q ss_pred CCcEEcChhcHHHHhc--CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcHHHHHHcCCCC-----
Q 017071 56 KDVVSLNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILA----- 127 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~~--~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~----- 127 (378)
..+.+++.++|++.+. .+++++|+|||+||++|+.+.|.++++++++++ ++.|+.||++++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 5788999999998773 457899999999999999999999999999975 69999999999999999999988
Q ss_pred -CcEEEEEeCCeEeeeeeC
Q 017071 128 -YPTLYLFVAGVRQFQFFG 145 (378)
Q Consensus 128 -~Pt~~~~~~g~~~~~~~g 145 (378)
+||+++|++|+.+.++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999999987
No 35
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.84 E-value=1.7e-20 Score=143.40 Aligned_cols=100 Identities=23% Similarity=0.517 Sum_probs=88.8
Q ss_pred CcEEcChhcHHHHh---cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC-cHHHHHH-cCCCCCcE
Q 017071 57 DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-EKDLAKE-YNILAYPT 130 (378)
Q Consensus 57 ~v~~l~~~~~~~~~---~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-~~~~~~~-~~v~~~Pt 130 (378)
.|+.++.++|+..+ .++++++|.|||+||++|+++.|.|+++++.+++ ++.++.|||+. +..+|++ ++|+++||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 57889999999877 3578999999999999999999999999999987 69999999998 5788874 99999999
Q ss_pred EEEEeCC-eEeeeeeCC-CCHHHHHHHH
Q 017071 131 LYLFVAG-VRQFQFFGE-RTRDVISAWV 156 (378)
Q Consensus 131 ~~~~~~g-~~~~~~~g~-~~~~~l~~~i 156 (378)
+++|++| .....|.|. ++.+.|.+||
T Consensus 82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999854 567889995 8999999885
No 36
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.84 E-value=2.7e-20 Score=138.82 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=91.6
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEecCC--ChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEE
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYANW--CYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a~w--C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (378)
....++..||++.+..+.+++|.|||+| |++|+.+.|.++++++++++.+.|+.||++++++++.+|+|+++||+++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~f 90 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFF 90 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence 4457899999988888999999999997 99999999999999999998899999999999999999999999999999
Q ss_pred eCCeEeeeeeCCCCHHHHHH
Q 017071 135 VAGVRQFQFFGERTRDVISA 154 (378)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~ 154 (378)
++|+.+.++.|..+.+++..
T Consensus 91 kdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 91 RDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred ECCEEEEEEeCccCHHHHhh
Confidence 99999999999999888753
No 37
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.83 E-value=5.9e-20 Score=139.57 Aligned_cols=98 Identities=34% Similarity=0.641 Sum_probs=89.0
Q ss_pred cEEcChhcHHHHh-cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CcEEEEEeCcCcHHHHHHcCCCCCcEEEEE
Q 017071 58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (378)
Q Consensus 58 v~~l~~~~~~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (378)
|.+|++++|++.+ ..+++++|+|||+||++|+.+.|.++++++.+++ .+.++.+||+++ +++..+++.++||+++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 6789999999877 4568999999999999999999999999999876 699999999987 68899999999999999
Q ss_pred eCCe--EeeeeeCCCCHHHHHHHH
Q 017071 135 VAGV--RQFQFFGERTRDVISAWV 156 (378)
Q Consensus 135 ~~g~--~~~~~~g~~~~~~l~~~i 156 (378)
.+|+ ...+|.|..+.+.|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9886 577899999999999885
No 38
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.82 E-value=1.7e-19 Score=136.78 Aligned_cols=94 Identities=29% Similarity=0.506 Sum_probs=84.1
Q ss_pred hcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC---CcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEe
Q 017071 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (378)
Q Consensus 64 ~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 140 (378)
++|++. .++++++|.|||+||++|+.+.|.|+++++.+++ .+.++.+||++.+.++++|+|.++||+++|++| ..
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~~ 84 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-LA 84 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-Cc
Confidence 567764 4578999999999999999999999999999854 599999999999999999999999999999877 56
Q ss_pred eeeeCCCCHHHHHHHHHHH
Q 017071 141 FQFFGERTRDVISAWVREK 159 (378)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~ 159 (378)
.++.|..+.+.|.+|+++.
T Consensus 85 ~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 7899999999999999864
No 39
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.82 E-value=3e-19 Score=142.57 Aligned_cols=99 Identities=17% Similarity=0.336 Sum_probs=88.7
Q ss_pred hhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc--HHHHHHcCCCCCcEEEEEe-CCeE
Q 017071 63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--KDLAKEYNILAYPTLYLFV-AGVR 139 (378)
Q Consensus 63 ~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~-~g~~ 139 (378)
...++..+.++++++|+|||+||++|+.+.|.+.++++.+.+++.|+.||++.+ ..++++|+|.++||+++|+ +|+.
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 345677778899999999999999999999999999999987777888877754 5899999999999999997 8999
Q ss_pred eeeeeCCCCHHHHHHHHHHHhc
Q 017071 140 QFQFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~~ 161 (378)
+.++.|..+.+.|.++|.+.+.
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc
Confidence 9999999999999999999874
No 40
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.81 E-value=1.5e-19 Score=137.54 Aligned_cols=99 Identities=36% Similarity=0.672 Sum_probs=89.7
Q ss_pred cEEcChhcHHHHhc-CCCcEEEEEecCCChhHHhhHHHHHHHHHHhc--CCcEEEEEeCcC-cHHHHHHcCCCCCcEEEE
Q 017071 58 VVSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL-EKDLAKEYNILAYPTLYL 133 (378)
Q Consensus 58 v~~l~~~~~~~~~~-~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~ 133 (378)
+.++++++|+..+. .+++++|.|||+||++|+++.|.+.++++.++ +++.++.+||+. ++++|++|+|+++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 56789999998885 45599999999999999999999999999987 379999999999 999999999999999999
Q ss_pred EeCC-eEeeeeeCCCCHHHHHHHH
Q 017071 134 FVAG-VRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 134 ~~~g-~~~~~~~g~~~~~~l~~~i 156 (378)
|++| +....|.|.++.+.|.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 9955 6778899999999999885
No 41
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.81 E-value=4.8e-19 Score=138.47 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=85.4
Q ss_pred ChhcHHHHh--cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEE-EEeCCe
Q 017071 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY-LFVAGV 138 (378)
Q Consensus 62 ~~~~~~~~~--~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~-~~~~g~ 138 (378)
+..++++.+ ..+++++|.|||+||++|+.+.|.++++++++++.+.|+.||+|++++++++|+|++.||++ +|++|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 467788777 46789999999999999999999999999999878999999999999999999999887666 888997
Q ss_pred -EeeeeeC--------CCCHHHHHHHHHHHh
Q 017071 139 -RQFQFFG--------ERTRDVISAWVREKM 160 (378)
Q Consensus 139 -~~~~~~g--------~~~~~~l~~~i~~~~ 160 (378)
.+.+..| ..+.++|.+-++...
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 7778888 567777777766554
No 42
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.5e-19 Score=133.86 Aligned_cols=86 Identities=27% Similarity=0.453 Sum_probs=78.2
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHH
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (378)
..+++++|+|||+|||+|+.+.|.+.+++.+|.+ +.|++||+|+.++++++++|.+.||++++++|+.+.++.|....
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~- 96 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA- 96 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH-
Confidence 3469999999999999999999999999999997 99999999999999999999999999999999999999998443
Q ss_pred HHHHHHHH
Q 017071 151 VISAWVRE 158 (378)
Q Consensus 151 ~l~~~i~~ 158 (378)
.+.+.+.+
T Consensus 97 ~l~~~i~~ 104 (106)
T KOG0907|consen 97 ELEKKIAK 104 (106)
T ss_pred HHHHHHHh
Confidence 66666654
No 43
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.81 E-value=5.8e-19 Score=133.28 Aligned_cols=99 Identities=28% Similarity=0.490 Sum_probs=90.3
Q ss_pred cChhcHHHHhcC-CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeE
Q 017071 61 LNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (378)
Q Consensus 61 l~~~~~~~~~~~-~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 139 (378)
++.++|.+.+.. +++++|.||++||++|+.+.|.+.++++.+++++.|+.+|+++++.++++|+|.++||++++++|+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 356778876644 5699999999999999999999999999998789999999999999999999999999999999988
Q ss_pred eeeeeCCCCHHHHHHHHHHH
Q 017071 140 QFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~ 159 (378)
...+.|..+.+.+.+||++.
T Consensus 81 ~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 81 VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeeecCCCCHHHHHHHHHhh
Confidence 88999999999999999865
No 44
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.80 E-value=2e-19 Score=136.53 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=84.7
Q ss_pred hcHHHHhcCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCcEEEEEeCcC----cHHHHHHcCCCCCcEEEEEe-
Q 017071 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFV- 135 (378)
Q Consensus 64 ~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~- 135 (378)
+.|++++.++++++|.|||+||++|+.+.|.+ .++++.+++++.++.||+++ ...++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 46778888999999999999999999999988 67888887789999999987 57899999999999999998
Q ss_pred -CCeEeeeeeCCCCHHHHHHHH
Q 017071 136 -AGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 136 -~g~~~~~~~g~~~~~~l~~~i 156 (378)
+|+.+.++.|..+.++|.++|
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCCCCcccccccCHHHHHHHh
Confidence 788899999999999999887
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.80 E-value=2.8e-19 Score=134.88 Aligned_cols=97 Identities=36% Similarity=0.680 Sum_probs=90.3
Q ss_pred EcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHh--cCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCC
Q 017071 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG 137 (378)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 137 (378)
+++.++|.+.+.++++++|.||++||++|+.+.|.|.++++.+ .+++.++.+||+++..++++|+|.++||++++++|
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 5788999999988889999999999999999999999999999 46899999999999999999999999999999966
Q ss_pred -eEeeeeeCCCCHHHHHHHH
Q 017071 138 -VRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 138 -~~~~~~~g~~~~~~l~~~i 156 (378)
+...+|.|..+.+.+.+|+
T Consensus 82 ~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 82 SKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CcccccCCCCcCHHHHHhhC
Confidence 7888999999999998874
No 46
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.80 E-value=7.1e-19 Score=135.31 Aligned_cols=90 Identities=24% Similarity=0.265 Sum_probs=81.9
Q ss_pred CCcEEcChhcHHHHhcCC---CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEE
Q 017071 56 KDVVSLNGKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~---~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (378)
..+..++.++|.+.+.+. ++++|+||||||++|+.+.|.++++++++. ++.|+.||++++ .++++|+|.++||++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 467788999999887544 899999999999999999999999999987 689999999999 999999999999999
Q ss_pred EEeCCeEeeeeeCCC
Q 017071 133 LFVAGVRQFQFFGER 147 (378)
Q Consensus 133 ~~~~g~~~~~~~g~~ 147 (378)
+|++|+.+.++.|..
T Consensus 82 ~f~~G~~v~~~~G~~ 96 (113)
T cd02957 82 VYKNGELIDNIVGFE 96 (113)
T ss_pred EEECCEEEEEEecHH
Confidence 999999999998853
No 47
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.80 E-value=1e-18 Score=133.88 Aligned_cols=91 Identities=23% Similarity=0.282 Sum_probs=83.1
Q ss_pred CCcEEcCh-hcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEE
Q 017071 56 KDVVSLNG-KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (378)
Q Consensus 56 ~~v~~l~~-~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (378)
..+..+++ ++|.+.+.++++++|+||++||++|+.+.|.++++++++. ++.|+.||++++++++++|+|.++||+++|
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 35667776 8999999888999999999999999999999999999987 599999999999999999999999999999
Q ss_pred eCCeEeeeeeCCC
Q 017071 135 VAGVRQFQFFGER 147 (378)
Q Consensus 135 ~~g~~~~~~~g~~ 147 (378)
++|+.+.++.|..
T Consensus 83 k~G~~v~~~~g~~ 95 (113)
T cd02989 83 KNGKTVDRIVGFE 95 (113)
T ss_pred ECCEEEEEEECcc
Confidence 9999888887753
No 48
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.79 E-value=1.8e-18 Score=129.56 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=82.3
Q ss_pred hhcHHHHhcCC--CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEe
Q 017071 63 GKNFSEFMGKN--RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (378)
Q Consensus 63 ~~~~~~~~~~~--~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 140 (378)
.++|++.+... ++++|+||++||++|+.+.|.++++++++...+.++.+|+++.++++++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 46777777555 9999999999999999999999999999766899999999999999999999999999999999888
Q ss_pred eeeeCCCCHHHHHHHH
Q 017071 141 FQFFGERTRDVISAWV 156 (378)
Q Consensus 141 ~~~~g~~~~~~l~~~i 156 (378)
.++.|. +.+.|.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 888886 566666554
No 49
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.78 E-value=2.6e-18 Score=128.45 Aligned_cols=87 Identities=16% Similarity=0.311 Sum_probs=82.6
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHH
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (378)
..+++++|.||++||++|+.+.|.++++++++.+++.++.+|++++++++++++|.++||++++++|+.+.++.|..+.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~ 90 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS 90 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence 67899999999999999999999999999999878999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 017071 151 VISAWVR 157 (378)
Q Consensus 151 ~l~~~i~ 157 (378)
++.+|++
T Consensus 91 ~~~~~l~ 97 (97)
T cd02949 91 EYREFIE 97 (97)
T ss_pred HHHHhhC
Confidence 9988873
No 50
>PTZ00051 thioredoxin; Provisional
Probab=99.77 E-value=4.9e-18 Score=127.46 Aligned_cols=90 Identities=27% Similarity=0.452 Sum_probs=81.3
Q ss_pred ChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEee
Q 017071 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF 141 (378)
Q Consensus 62 ~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 141 (378)
+.+++++.+..+++++|+||++||++|+.+.|.++++++.+. ++.++.+|++++..++++|+|.++||++++++|+.+.
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEE
Confidence 356788888889999999999999999999999999999876 6999999999999999999999999999999999999
Q ss_pred eeeCCCCHHHHH
Q 017071 142 QFFGERTRDVIS 153 (378)
Q Consensus 142 ~~~g~~~~~~l~ 153 (378)
++.|. ..+.|.
T Consensus 86 ~~~G~-~~~~~~ 96 (98)
T PTZ00051 86 TLLGA-NDEALK 96 (98)
T ss_pred EEeCC-CHHHhh
Confidence 99996 555553
No 51
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.76 E-value=1e-17 Score=156.20 Aligned_cols=107 Identities=21% Similarity=0.459 Sum_probs=93.4
Q ss_pred cccCCCcEEcChhcHHHHhc---CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcH-HHH-HHcCC
Q 017071 52 LLYAKDVVSLNGKNFSEFMG---KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEK-DLA-KEYNI 125 (378)
Q Consensus 52 ~~~~~~v~~l~~~~~~~~~~---~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~-~~~-~~~~v 125 (378)
.+.+..|+.|+.+||++.+. .++++||.||||||++|+.+.|.|+++++++++ ++.|+.|||+.+. .++ ++|+|
T Consensus 347 l~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 347 IFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred ccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC
Confidence 34567899999999998874 789999999999999999999999999999987 5999999999764 454 78999
Q ss_pred CCCcEEEEEeCCe-Eeeeee-CCCCHHHHHHHHHH
Q 017071 126 LAYPTLYLFVAGV-RQFQFF-GERTRDVISAWVRE 158 (378)
Q Consensus 126 ~~~Pt~~~~~~g~-~~~~~~-g~~~~~~l~~~i~~ 158 (378)
.++||+++|++|. ....|. |.++.+.|..|++.
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 9999999999874 456797 58999999999974
No 52
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.75 E-value=1.2e-17 Score=128.33 Aligned_cols=96 Identities=24% Similarity=0.452 Sum_probs=79.5
Q ss_pred CcEEcChhcHHHHhc-CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC---CcEEEEEeCcC--cHHHHHHcCCCCCcE
Q 017071 57 DVVSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYL--EKDLAKEYNILAYPT 130 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~-~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~--~~~~~~~~~v~~~Pt 130 (378)
.+++++.++|++.+. .+++++|+|||+||++|+.+.|.|+++++.+++ .+.++.+||+. ++++|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 578899999998874 457999999999999999999999999998864 58999999864 678999999999999
Q ss_pred EEEEeCCeEe----eeeeCC-CCHHHH
Q 017071 131 LYLFVAGVRQ----FQFFGE-RTRDVI 152 (378)
Q Consensus 131 ~~~~~~g~~~----~~~~g~-~~~~~l 152 (378)
+++|++|... ..|.|. +..+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 9999977421 355665 555554
No 53
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.75 E-value=5.2e-18 Score=142.85 Aligned_cols=150 Identities=25% Similarity=0.392 Sum_probs=125.9
Q ss_pred EcCCCCccHHHHHHHh-ccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCC-CCHHHHHHHHHhcCC
Q 017071 188 LHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKH 265 (378)
Q Consensus 188 ~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~-~~~~~l~~fi~~~~~ 265 (378)
|.+..+...+.|.++| .+.+++.|+++.+.+++++++++. |+|++|++.++++..|.|+ ++.++|.+||+.+++
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~----p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIKE----PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCSS----SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCCC----CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 3455677899999988 778899999999999999999985 9999999988899999998 899999999999999
Q ss_pred CceEEecccchhhhhccchH-HH-----------------------------HHHhhhcCcchhhhhhHhhcCCCCCCCc
Q 017071 266 PLVVTLTIHNAQFVFQDPRK-QL-----------------------------LHVYVEMNSEGVGRRVSQEFGVSGNAPR 315 (378)
Q Consensus 266 P~~~~l~~~~~~~~~~~~~~-~l-----------------------------~f~~~d~~~~~~~~~l~~~~gi~~~~~p 315 (378)
|++.++|++++..+++.+.+ ++ .|+++|++ .+ .++++.+|+++...|
T Consensus 77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~--~~-~~~~~~~~i~~~~~P 153 (184)
T PF13848_consen 77 PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDAD--DF-PRLLKYFGIDEDDLP 153 (184)
T ss_dssp TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETT--TT-HHHHHHTTTTTSSSS
T ss_pred ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehH--Hh-HHHHHHcCCCCccCC
Confidence 99999999999999998865 22 56666665 33 356789999988999
Q ss_pred EEEEEcC-CCcc-ccCCCCCCHHHHHHHHHH
Q 017071 316 VIAYSAR-DAKK-YVLNGELTLSSIKSFGEE 344 (378)
Q Consensus 316 ~i~i~~~-~~~~-y~~~~~~~~~~i~~Fi~~ 344 (378)
+++|.+. ++++ |.++++++.++|.+|++|
T Consensus 154 ~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 154 ALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9999997 4443 445789999999999986
No 54
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.75 E-value=1.2e-17 Score=124.36 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=70.2
Q ss_pred hcHHHHhc--CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEee
Q 017071 64 KNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF 141 (378)
Q Consensus 64 ~~~~~~~~--~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 141 (378)
+.+++.+. ++++++|.|+|+||++|+.+.|.++++++++++.+.|+.||+|+.++++++|+|+..||+++|++|+.+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 45666553 5899999999999999999999999999999855999999999999999999999999999999996554
No 55
>PLN02309 5'-adenylylsulfate reductase
Probab=99.75 E-value=1.3e-17 Score=155.64 Aligned_cols=107 Identities=22% Similarity=0.485 Sum_probs=94.9
Q ss_pred ccCCCcEEcChhcHHHHh---cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCc-CcHHHHH-HcCCC
Q 017071 53 LYAKDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-LEKDLAK-EYNIL 126 (378)
Q Consensus 53 ~~~~~v~~l~~~~~~~~~---~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~-~~~~~~~-~~~v~ 126 (378)
..+..|++|+.++|++.+ ..+++++|+||||||++|+.+.|.|+++++.+.+ ++.|+.|||+ .+.++|+ +|+|.
T Consensus 342 ~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 342 FNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred cCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc
Confidence 355689999999999876 4789999999999999999999999999999976 6999999999 8888997 69999
Q ss_pred CCcEEEEEeCCe-EeeeeeC-CCCHHHHHHHHHHH
Q 017071 127 AYPTLYLFVAGV-RQFQFFG-ERTRDVISAWVREK 159 (378)
Q Consensus 127 ~~Pt~~~~~~g~-~~~~~~g-~~~~~~l~~~i~~~ 159 (378)
++||+++|++|. ....|.| .++.+.|.+|++.+
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999999764 4568875 69999999999864
No 56
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.74 E-value=1.9e-17 Score=129.97 Aligned_cols=98 Identities=17% Similarity=0.317 Sum_probs=85.1
Q ss_pred hcHHHHhcCC-CcEEEEEecCCChhHHhhHHHHH---HHHHHhcCCcEEEEEeCcCc-------------HHHHHHcCCC
Q 017071 64 KNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFA---AAAKMLKGEADLVMVDAYLE-------------KDLAKEYNIL 126 (378)
Q Consensus 64 ~~~~~~~~~~-~~~lv~F~a~wC~~C~~~~p~~~---~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~v~ 126 (378)
+.++.+..++ ++++|.|||+||++|+.++|.+. .+.+.+++++.++.+|.+++ .+++++|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 3456677788 99999999999999999999885 56666766788999998864 7899999999
Q ss_pred CCcEEEEEe-C-CeEeeeeeCCCCHHHHHHHHHHHhc
Q 017071 127 AYPTLYLFV-A-GVRQFQFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 127 ~~Pt~~~~~-~-g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (378)
++||+++++ + |+.+.++.|..+.+.+.++|+..+.
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999 5 6889999999999999999987763
No 57
>PTZ00062 glutaredoxin; Provisional
Probab=99.74 E-value=1.5e-16 Score=133.11 Aligned_cols=162 Identities=11% Similarity=0.112 Sum_probs=115.5
Q ss_pred ChhcHHHHhcCC-CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEe
Q 017071 62 NGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (378)
Q Consensus 62 ~~~~~~~~~~~~-~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 140 (378)
+.+++++.+..+ +.++++|||+||++|+.+.|.+.++++++. .+.|+.||.+ |+|.++||+++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 456777777644 778999999999999999999999999997 6999999977 999999999999999999
Q ss_pred eeeeCCCCHHHHHHHHHHHhcCCcccCCCHHHHHHhhccCCeEEEEEEc-----CCCCccHHHHHHHhccCCceeEE-EE
Q 017071 141 FQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLH-----DLEGMESEELAAASKLHSDVNFY-QT 214 (378)
Q Consensus 141 ~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~f~~-----~~~~~~~~~~~~~a~~~~~~~f~-~~ 214 (378)
.++.|. ++..+..++.++.+.....- ..+.++++++++++++ |.. ++|+........+.+..-.+... ..
T Consensus 76 ~r~~G~-~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~Vvv--f~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~ 151 (204)
T PTZ00062 76 NSLEGC-NTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHKILL--FMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIF 151 (204)
T ss_pred eeeeCC-CHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCEEE--EEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcC
Confidence 999987 69999999998886544321 2345566666655444 544 57776655554444443333322 33
Q ss_pred ccHHHHhhcC-CCCCCCCCeEEE
Q 017071 215 TSADVAEFFH-IHPKSKRPALIF 236 (378)
Q Consensus 215 ~~~~~~~~~~-i~~~~~~P~i~~ 236 (378)
.++++.+.+. .++...+|.|.+
T Consensus 152 ~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 152 EDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred CCHHHHHHHHHHhCCCCCCeEEE
Confidence 4555544332 122234787664
No 58
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.74 E-value=7.6e-17 Score=135.19 Aligned_cols=88 Identities=13% Similarity=0.260 Sum_probs=75.3
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH-----------------------HHHHHcCCCC
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----------------------DLAKEYNILA 127 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~v~~ 127 (378)
.++++++|+|||+||++|++++|.+.+++++ ++.++.|+.+++. .+++.|||.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 4789999999999999999999999998653 6778888765432 3556889999
Q ss_pred CcEEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHhc
Q 017071 128 YPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 128 ~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (378)
+|++++++ +|++..++.|..+.+.+.++++..+.
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999998 99999999999999999999988773
No 59
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.6e-17 Score=150.06 Aligned_cols=215 Identities=16% Similarity=0.207 Sum_probs=140.8
Q ss_pred cCCCcEEcChhcHHHHhcC-CCcEEEEEecCCChhHHhhHHHHHHHHHHhcC---CcEEEEEeCc--CcHHHHHHcCCCC
Q 017071 54 YAKDVVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAY--LEKDLAKEYNILA 127 (378)
Q Consensus 54 ~~~~v~~l~~~~~~~~~~~-~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~--~~~~~~~~~~v~~ 127 (378)
++..++.|+.++|+.++.. .+..+|.||++|||||+.+.|.|.++|+.+.. -+.++.|||. +|..+|++|+|++
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 4478999999999988844 45899999999999999999999999998876 6899999996 5678999999999
Q ss_pred CcEEEEEeCC----eEeeeeeCCCCHHHHHHHHHHHhc-----------C---CcccCCCHHHHHHhhccC-CeEEEEEE
Q 017071 128 YPTLYLFVAG----VRQFQFFGERTRDVISAWVREKMT-----------L---GTYSITTTDEAERILTVE-SKLVLGFL 188 (378)
Q Consensus 128 ~Pt~~~~~~g----~~~~~~~g~~~~~~l~~~i~~~~~-----------~---~~~~i~~~~~~~~~~~~~-~~~~v~f~ 188 (378)
+|++.+|..+ ..-..+.|.....++...+.+.+. + ++.+-++.+++.+..... +.+.|.|-
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e 196 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFE 196 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEe
Confidence 9999999722 223456677777777777766552 2 334444555555554443 23444443
Q ss_pred cCCCCccHHHHHHHhccCCceeEEEEccHHHHhh--cCCCCCCCCCeEEEeecCCCCccccCCC---CCHHHHHHHHHhc
Q 017071 189 HDLEGMESEELAAASKLHSDVNFYQTTSADVAEF--FHIHPKSKRPALIFLHLEAGKATPFRHQ---FTRLAIANFVTHT 263 (378)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~--~~i~~~~~~P~i~~~~~~~~~~~~y~g~---~~~~~l~~fi~~~ 263 (378)
.....-.++.+...... ..+......+.+.... ++++. .|...+++++...+..-.+. .-.+.|.++|-+.
T Consensus 197 ~~~s~lg~~~~l~~l~~-~~v~vr~~~d~q~~~~~~l~~~~---~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~ 272 (606)
T KOG1731|consen 197 TEPSDLGWANLLNDLPS-KQVGVRARLDTQNFPLFGLKPDN---FPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDK 272 (606)
T ss_pred cCCcccHHHHHHhhccC-CCcceEEEecchhccccccCCCC---chhhhhhcCCcccccccccccHHHHHHHHHHHhcCc
Confidence 33223344444443322 3333333333333333 45554 79999999886554443332 2236777777653
Q ss_pred ---CCCceEEec
Q 017071 264 ---KHPLVVTLT 272 (378)
Q Consensus 264 ---~~P~~~~l~ 272 (378)
.-|.+...+
T Consensus 273 ~~a~~pt~~p~~ 284 (606)
T KOG1731|consen 273 NEASGPTLHPIT 284 (606)
T ss_pred cccCCCCcCccc
Confidence 344444444
No 60
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.74 E-value=3.1e-17 Score=125.74 Aligned_cols=95 Identities=14% Similarity=0.234 Sum_probs=83.2
Q ss_pred HHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEee--ee
Q 017071 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF--QF 143 (378)
Q Consensus 66 ~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~--~~ 143 (378)
|.+.+..+..++|.|||+||++|+.+.|.++++++.+ +++.+..+|.+++++++++|+|.++||++++++|+... ++
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEE
Confidence 4455556777999999999999999999999999887 57999999999999999999999999999999764433 78
Q ss_pred eCCCCHHHHHHHHHHHhc
Q 017071 144 FGERTRDVISAWVREKMT 161 (378)
Q Consensus 144 ~g~~~~~~l~~~i~~~~~ 161 (378)
.|..+..++.+||...+.
T Consensus 94 ~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 94 YGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EecCchHHHHHHHHHHHh
Confidence 999999999999987763
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.73 E-value=2.4e-17 Score=159.64 Aligned_cols=116 Identities=22% Similarity=0.388 Sum_probs=102.0
Q ss_pred CCCcccCCCcEEcChhcHHHHh-cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CcEEEEEeCcCcHHHHHHcCC
Q 017071 49 TWPLLYAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNI 125 (378)
Q Consensus 49 ~~~~~~~~~v~~l~~~~~~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v 125 (378)
+.|......+..+++++|++.+ ..+++++|.|||+||++|+.+.|.|+++++.+++ .+.++.+|++.+...++++++
T Consensus 350 ~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v 429 (477)
T PTZ00102 350 PIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSW 429 (477)
T ss_pred CCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCC
Confidence 3344456779999999999874 7789999999999999999999999999998875 689999999999999999999
Q ss_pred CCCcEEEEEeCCe-EeeeeeCCCCHHHHHHHHHHHhcCCc
Q 017071 126 LAYPTLYLFVAGV-RQFQFFGERTRDVISAWVREKMTLGT 164 (378)
Q Consensus 126 ~~~Pt~~~~~~g~-~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (378)
+++||+++|++|+ ...+|.|.++.+.+.+||.+....+.
T Consensus 430 ~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~ 469 (477)
T PTZ00102 430 SAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF 469 (477)
T ss_pred cccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence 9999999999664 45689999999999999999885433
No 62
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.73 E-value=5.9e-17 Score=125.48 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=83.5
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH-----------HHHHHcC-
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----------DLAKEYN- 124 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-----------~~~~~~~- 124 (378)
.+..++.+++.+.+.+++.++|+|+++||++|+.+.|.+.+++++. ++.+..||.+.+. ++.++|+
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 5667888999999988999999999999999999999999999983 5678888887543 5556665
Q ss_pred ---CCCCcEEEEEeCCeEeeeeeC-CCCHHHHHHHHH
Q 017071 125 ---ILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVR 157 (378)
Q Consensus 125 ---v~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~ 157 (378)
|.++||+++|++|+.+.+..| ..+.++|.+|+.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 556999999999999999999 567899888763
No 63
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.73 E-value=5.8e-17 Score=133.60 Aligned_cols=90 Identities=18% Similarity=0.212 Sum_probs=81.1
Q ss_pred CCCcEEcCh-hcHHHHhcCC---CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcE
Q 017071 55 AKDVVSLNG-KNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130 (378)
Q Consensus 55 ~~~v~~l~~-~~~~~~~~~~---~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 130 (378)
...+.+++. ++|...+.+. .+++|+|||+||++|+.+.|.++++++++. .+.|++||+++. .++.+|+|.++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence 467888998 9999887433 499999999999999999999999999987 699999999987 8999999999999
Q ss_pred EEEEeCCeEeeeeeCC
Q 017071 131 LYLFVAGVRQFQFFGE 146 (378)
Q Consensus 131 ~~~~~~g~~~~~~~g~ 146 (378)
+++|++|+.+.++.|.
T Consensus 139 lllyk~G~~v~~~vG~ 154 (175)
T cd02987 139 LLVYKGGELIGNFVRV 154 (175)
T ss_pred EEEEECCEEEEEEech
Confidence 9999999988888764
No 64
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.72 E-value=1.2e-16 Score=118.24 Aligned_cols=91 Identities=26% Similarity=0.493 Sum_probs=84.4
Q ss_pred cHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeee
Q 017071 65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF 144 (378)
Q Consensus 65 ~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~ 144 (378)
+|++.+..+++++|.||++||++|+.+.|.++++++. .+++.++.+|++.+++++++|++.++|+++++++|+....+.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 80 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVV 80 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEe
Confidence 5677777779999999999999999999999999988 558999999999999999999999999999999998899999
Q ss_pred CCCCHHHHHHHH
Q 017071 145 GERTRDVISAWV 156 (378)
Q Consensus 145 g~~~~~~l~~~i 156 (378)
|..+.+.|.++|
T Consensus 81 g~~~~~~l~~~i 92 (93)
T cd02947 81 GADPKEELEEFL 92 (93)
T ss_pred cCCCHHHHHHHh
Confidence 999999998887
No 65
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.9e-17 Score=135.07 Aligned_cols=100 Identities=25% Similarity=0.331 Sum_probs=90.0
Q ss_pred ChhcHHHHhc--CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeE
Q 017071 62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139 (378)
Q Consensus 62 ~~~~~~~~~~--~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 139 (378)
++..|+..+. ..+.++|.|+|+||+||+...|.|..++.+|. +.+|++||+|+.+..+..+||...||+++|+||..
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 4567877663 45799999999999999999999999999997 79999999999999999999999999999999999
Q ss_pred eeeeeCCCCHHHHHHHHHHHhcCC
Q 017071 140 QFQFFGERTRDVISAWVREKMTLG 163 (378)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~~~~ 163 (378)
+.++.|. ++..|.+.+.++...+
T Consensus 87 id~~qGA-d~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 87 IDQIQGA-DASGLEEKVAKYASTS 109 (288)
T ss_pred eeeecCC-CHHHHHHHHHHHhccC
Confidence 9999997 8889999999887543
No 66
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.70 E-value=3.5e-16 Score=130.31 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=89.6
Q ss_pred cCCCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC-----------------
Q 017071 54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------- 115 (378)
Q Consensus 54 ~~~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------- 115 (378)
++..+.+++++.++.....+++++|+||++||++|+...|.+.++++++++ ++.++.|+++.
T Consensus 42 p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~ 121 (173)
T PRK03147 42 PNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFP 121 (173)
T ss_pred CCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCce
Confidence 344566777777664444789999999999999999999999999999986 58888888753
Q ss_pred -----cHHHHHHcCCCCCcEEEEEe-CCeEeeeeeCCCCHHHHHHHHHHH
Q 017071 116 -----EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 116 -----~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
+..++++|++.++|++++++ +|+++..+.|..+.+++.+++.+.
T Consensus 122 ~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 122 VAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred EEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 45778999999999999998 898888999999999999988753
No 67
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.8e-17 Score=150.65 Aligned_cols=111 Identities=27% Similarity=0.496 Sum_probs=96.1
Q ss_pred CCCcccC-CCcEEcChhcHHHHh-cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CcEEEEEeCcCcHHHHHHcC
Q 017071 49 TWPLLYA-KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYN 124 (378)
Q Consensus 49 ~~~~~~~-~~v~~l~~~~~~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~ 124 (378)
+.|...+ ..|..+-++||+..+ +.++-|||.||||||+||+++.|.|++|++.|++ ++.++++|.+.|.- ....
T Consensus 358 piPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~ 435 (493)
T KOG0190|consen 358 PIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLK 435 (493)
T ss_pred CCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--cccc
Confidence 5555555 679999999999877 7889999999999999999999999999999998 89999999988753 3456
Q ss_pred CCCCcEEEEEeCC--eEeeeeeCCCCHHHHHHHHHHHhc
Q 017071 125 ILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 125 v~~~Pt~~~~~~g--~~~~~~~g~~~~~~l~~~i~~~~~ 161 (378)
+.++||+++++.| +.+..|.|.++.+++..|+.+...
T Consensus 436 ~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 436 VDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 7779999999955 357899999999999999987764
No 68
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.69 E-value=4e-16 Score=147.53 Aligned_cols=103 Identities=21% Similarity=0.230 Sum_probs=84.6
Q ss_pred CCCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEE----------------------
Q 017071 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMV---------------------- 111 (378)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~v---------------------- 111 (378)
+..+.++++++.. +.++++++|+|||+||++|++++|.+++++++++. ++.++.|
T Consensus 40 ~f~l~D~dG~~v~--lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~ 117 (521)
T PRK14018 40 TLKTADNRPASVY--LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLD 117 (521)
T ss_pred CeEeecCCCceee--ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCC
Confidence 3355566665543 34789999999999999999999999999999874 5655544
Q ss_pred ------eCcCcHHHHHHcCCCCCcEEEEEe-CCeEeeeeeCCCCHHHHHHHHHHH
Q 017071 112 ------DAYLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 112 ------d~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
++|.+..+++.|+|+++||+++++ +|+++.++.|..+.++|.++|+..
T Consensus 118 y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 118 YPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred CcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 345567899999999999998886 999999999999999999999843
No 69
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.65 E-value=2.5e-15 Score=120.59 Aligned_cols=87 Identities=11% Similarity=0.215 Sum_probs=69.1
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc------------HHHH-HHc---CCCCCcEEEEE
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE------------KDLA-KEY---NILAYPTLYLF 134 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~------------~~~~-~~~---~v~~~Pt~~~~ 134 (378)
..++..+|+|||+||++|++++|.+++++++++ +.++.|+.++. .... +.| ++.++||++++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 346777999999999999999999999999884 55666665542 2333 345 88999999999
Q ss_pred e-CCeE-eeeeeCCCCHHHHHHHHHHH
Q 017071 135 V-AGVR-QFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 135 ~-~g~~-~~~~~g~~~~~~l~~~i~~~ 159 (378)
+ +|+. ...+.|..+.+++.+.+.+.
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 8 6654 55789999999999888765
No 70
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.65 E-value=2e-15 Score=126.01 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=78.0
Q ss_pred CCCcEEcChhcHHHHh-cC--CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEE
Q 017071 55 AKDVVSLNGKNFSEFM-GK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (378)
Q Consensus 55 ~~~v~~l~~~~~~~~~-~~--~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 131 (378)
-+.+..++..+|...+ .. +.+|+|+||++||++|+.+.|.|+++|+++. .+.|++||++.. +..|++.++||+
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEE
Confidence 4688899999998765 33 3589999999999999999999999999997 699999998753 689999999999
Q ss_pred EEEeCCeEeeeeeCC
Q 017071 132 YLFVAGVRQFQFFGE 146 (378)
Q Consensus 132 ~~~~~g~~~~~~~g~ 146 (378)
++|++|+.+.++.|.
T Consensus 157 liyk~G~~v~~ivG~ 171 (192)
T cd02988 157 LVYRNGDIVKQFIGL 171 (192)
T ss_pred EEEECCEEEEEEeCc
Confidence 999999999999875
No 71
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.64 E-value=3.1e-15 Score=108.16 Aligned_cols=80 Identities=18% Similarity=0.363 Sum_probs=72.8
Q ss_pred EEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHH
Q 017071 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW 155 (378)
Q Consensus 76 ~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 155 (378)
.+..||++||++|+.+.|.++++++.++..+.+..||++++++++++||+.++||+++ +|+ .++.|..+.+.+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4678999999999999999999999988789999999999999999999999999986 775 378899999999999
Q ss_pred HHHH
Q 017071 156 VREK 159 (378)
Q Consensus 156 i~~~ 159 (378)
+.+.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8765
No 72
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.63 E-value=2e-15 Score=114.31 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=78.8
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCC--CCcEEEEEeC--CeEeeeeeCCC
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL--AYPTLYLFVA--GVRQFQFFGER 147 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~g~~ 147 (378)
.++++++.||++||++|+.+.|.++++|+++++++.|+.||+++++.+++.||+. ++|+++++++ |+......|..
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 4789999999999999999999999999999999999999999999999999999 9999999997 64444444556
Q ss_pred CHHHHHHHHHHH
Q 017071 148 TRDVISAWVREK 159 (378)
Q Consensus 148 ~~~~l~~~i~~~ 159 (378)
+.+.|.+|+.+.
T Consensus 91 ~~~~l~~fi~~~ 102 (103)
T cd02982 91 TAESLEEFVEDF 102 (103)
T ss_pred CHHHHHHHHHhh
Confidence 999999999864
No 73
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.63 E-value=8.2e-15 Score=121.62 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=74.3
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeC-----------------------cCcHHHHHHcCCCC
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA-----------------------YLEKDLAKEYNILA 127 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~v~~ 127 (378)
.++++++|+||++||++|++++|.+++++++ ++.++.|+. |.+..++++|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 4689999999999999999999999988764 466666654 33445778899999
Q ss_pred CcEEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHhc
Q 017071 128 YPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 128 ~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (378)
+|++++++ +|+++.++.|..+.+++.+++.+.++
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 99988887 99999999999999999999988763
No 74
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.60 E-value=1.4e-14 Score=118.16 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=70.7
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc-------------HHHHHHcCC--CCCcEEEEEe-CCeEe
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------------KDLAKEYNI--LAYPTLYLFV-AGVRQ 140 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~v--~~~Pt~~~~~-~g~~~ 140 (378)
+|+|||+||++|++++|.+.++++++ ++.++.|+.++. ..+.+.|++ .++|++++++ +|++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~--g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY--GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc--CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 78899999999999999999999998 477777776532 336778995 6999999998 89775
Q ss_pred -eeeeCCCCHHHHHHHHHHHhcC
Q 017071 141 -FQFFGERTRDVISAWVREKMTL 162 (378)
Q Consensus 141 -~~~~g~~~~~~l~~~i~~~~~~ 162 (378)
..+.|..+.+++.+.+.+.+..
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhh
Confidence 4799999999999999888754
No 75
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.60 E-value=2e-15 Score=116.16 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=72.3
Q ss_pred hcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH-HHHHHcCCCC--CcEEEEEe-CCeE
Q 017071 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLAKEYNILA--YPTLYLFV-AGVR 139 (378)
Q Consensus 64 ~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~--~Pt~~~~~-~g~~ 139 (378)
+.++.+..++++++|.|||+||++|+.+.|.+.+.+........|+.||.+.+. ...++|++.+ +||+++++ +|+.
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 344555678999999999999999999999999987754444455666666554 4567899987 99999998 9987
Q ss_pred ee---eeeCCCCHHHHHHHHHHHh
Q 017071 140 QF---QFFGERTRDVISAWVREKM 160 (378)
Q Consensus 140 ~~---~~~g~~~~~~l~~~i~~~~ 160 (378)
+. ...|..+...+.+.+....
T Consensus 90 ~~~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 90 HPEIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred chhhccCCCCccccccCCCHHHHH
Confidence 65 4556666666666555443
No 76
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.60 E-value=5.1e-15 Score=112.88 Aligned_cols=78 Identities=18% Similarity=0.357 Sum_probs=67.9
Q ss_pred ChhcHHHHhcC--CCcEEEEEec-------CCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC-------cHHHHHHcCC
Q 017071 62 NGKNFSEFMGK--NRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-------EKDLAKEYNI 125 (378)
Q Consensus 62 ~~~~~~~~~~~--~~~~lv~F~a-------~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-------~~~~~~~~~v 125 (378)
+.++|.+.+.. +++++|.||| +||++|+.+.|.+++++.++++++.|+.||+++ +.+++.+++|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 34566766644 7899999999 999999999999999999998789999999976 4689999999
Q ss_pred C-CCcEEEEEeCCeE
Q 017071 126 L-AYPTLYLFVAGVR 139 (378)
Q Consensus 126 ~-~~Pt~~~~~~g~~ 139 (378)
. ++||++++++|+.
T Consensus 88 ~~~iPT~~~~~~~~~ 102 (119)
T cd02952 88 TTGVPTLLRWKTPQR 102 (119)
T ss_pred ccCCCEEEEEcCCce
Confidence 9 9999999987743
No 77
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.59 E-value=1.2e-14 Score=114.41 Aligned_cols=87 Identities=16% Similarity=0.308 Sum_probs=70.9
Q ss_pred hcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEe-----------------------CcCcHHHH
Q 017071 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-----------------------AYLEKDLA 120 (378)
Q Consensus 64 ~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd-----------------------~~~~~~~~ 120 (378)
..+.....++++++|+|||+||++|+++.|.++++++.+ ++.++.|+ +|.+..++
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 93 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVG 93 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHH
Confidence 334433446899999999999999999999999998876 36666665 34556788
Q ss_pred HHcCCCCCcEEEEEe-CCeEeeeeeCCCCHHHH
Q 017071 121 KEYNILAYPTLYLFV-AGVRQFQFFGERTRDVI 152 (378)
Q Consensus 121 ~~~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l 152 (378)
+.|++.++|++++++ +|+++.++.|..+.+.|
T Consensus 94 ~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 94 IDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 999999999888887 99999999999887754
No 78
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.8e-14 Score=134.88 Aligned_cols=182 Identities=26% Similarity=0.398 Sum_probs=134.8
Q ss_pred CcEEcChhcHHHHh-cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhc--CCcEEEEEeCcCcHHHHHHcCCCCCcEEEE
Q 017071 57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLEKDLAKEYNILAYPTLYL 133 (378)
Q Consensus 57 ~v~~l~~~~~~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 133 (378)
.+..++..+|+..+ .....++|.||||||+||+.++|+|++++..++ ..+.++.+||+.+..+|++++|.++||+.+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 48899999999766 567889999999999999999999999999886 489999999999999999999999999999
Q ss_pred EeCCeE-eeeeeCCCCHHHHHHHHHHHhcCC-----cccCCCHH-HHHHhh---------ccCCeEEEEEEcCCCCc---
Q 017071 134 FVAGVR-QFQFFGERTRDVISAWVREKMTLG-----TYSITTTD-EAERIL---------TVESKLVLGFLHDLEGM--- 194 (378)
Q Consensus 134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~-----~~~i~~~~-~~~~~~---------~~~~~~~v~f~~~~~~~--- 194 (378)
|.+|.. ...|.|.++.+.+..|+.+..... +.++.+.+ ....++ ......++.|+.+||..
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGG 304 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccc
Confidence 998867 778889999999999999988663 33332221 011111 12335677888888864
Q ss_pred cHHHHHHHhcc----CCceeEEE---EccHHHHhhcCCCCCCCCCeEEEeecCC
Q 017071 195 ESEELAAASKL----HSDVNFYQ---TTSADVAEFFHIHPKSKRPALIFLHLEA 241 (378)
Q Consensus 195 ~~~~~~~~a~~----~~~~~f~~---~~~~~~~~~~~i~~~~~~P~i~~~~~~~ 241 (378)
..+.+...+.. ...+.+.. +....++.....+. +|++.+++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 355 (383)
T KOG0191|consen 305 FAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRG---YPTIKLYNYGK 355 (383)
T ss_pred cchhHHHHHhccccccccceeeccccccccchhhHhhhhc---CceeEeecccc
Confidence 45556665533 22233332 23333666666665 88888887653
No 79
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.55 E-value=3.6e-14 Score=112.48 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=59.7
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--------CcEEEEEeCcCc-------------------------HH
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLE-------------------------KD 118 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~--------~~~~~~vd~~~~-------------------------~~ 118 (378)
++++++|+|||+||++|++++|.+.++++++++ ++.++.|+.+++ ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 789999999999999999999999998876643 588888887642 25
Q ss_pred HHHHcCCCCCcEEEEEe-CCeEeee
Q 017071 119 LAKEYNILAYPTLYLFV-AGVRQFQ 142 (378)
Q Consensus 119 ~~~~~~v~~~Pt~~~~~-~g~~~~~ 142 (378)
++++|++.++||+++++ +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 77899999999999999 8866543
No 80
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.54 E-value=2.5e-14 Score=110.01 Aligned_cols=85 Identities=24% Similarity=0.461 Sum_probs=67.2
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHH---HHHhcCCcEEEEEeCcCc--------------------HHHHHHcCCCCC
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAA---AKMLKGEADLVMVDAYLE--------------------KDLAKEYNILAY 128 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~---~~~~~~~~~~~~vd~~~~--------------------~~~~~~~~v~~~ 128 (378)
+++++++.||++||++|+.+.+.+.+. ...+++++.++.++++.. .+++++|||.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 679999999999999999999999864 444554688888888753 358899999999
Q ss_pred cEEEEEe-CCeEeeeeeCCCCHHHHHHHH
Q 017071 129 PTLYLFV-AGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (378)
||+++++ +|+.+.++.|..+.++|.++|
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999998 899899999999999998875
No 81
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.53 E-value=7.6e-14 Score=107.77 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=75.5
Q ss_pred ChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCcEEEEEeCcCcHHHHHH--------cCCCCCcE
Q 017071 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKE--------YNILAYPT 130 (378)
Q Consensus 62 ~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~--------~~v~~~Pt 130 (378)
+++.+..+..++|+++|.|+|+||++|+.+.+.. .++++.+..++.++.+|.++.++++++ ||+.|+||
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 4566778888999999999999999999998743 356666666899999999998877653 58999999
Q ss_pred EEEEe-CCeEeeeeeCC-----CCHHHHHHHHHH
Q 017071 131 LYLFV-AGVRQFQFFGE-----RTRDVISAWVRE 158 (378)
Q Consensus 131 ~~~~~-~g~~~~~~~g~-----~~~~~l~~~i~~ 158 (378)
+++++ +|+.+....+. .+...+..++.+
T Consensus 84 ~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 84 NVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred EEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 99998 89877655443 333455555543
No 82
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.51 E-value=2.3e-13 Score=111.72 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=71.2
Q ss_pred cHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEE------EEEeCcC-----------------------
Q 017071 65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADL------VMVDAYL----------------------- 115 (378)
Q Consensus 65 ~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~------~~vd~~~----------------------- 115 (378)
.+......||+++|+|||+||++|+.++|.+++++++ ++.+ ..||.++
T Consensus 51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~ 127 (184)
T TIGR01626 51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWS 127 (184)
T ss_pred eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcc
Confidence 3333444699999999999999999999999999654 4555 6666554
Q ss_pred ------cHHHHHHcCCCCCcEE-EEEe-CCeEeeeeeCCCCHHHHHHHH
Q 017071 116 ------EKDLAKEYNILAYPTL-YLFV-AGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 116 ------~~~~~~~~~v~~~Pt~-~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (378)
+..++.+||+.++|+. ++++ +|++...+.|..+.+++.+.+
T Consensus 128 ~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 128 QVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred eEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 2346678999999888 7888 999999999999999887743
No 83
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.51 E-value=9.1e-14 Score=110.06 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=63.1
Q ss_pred ChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC---CcEEEEEeCcCc----------------------
Q 017071 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLE---------------------- 116 (378)
Q Consensus 62 ~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~---------------------- 116 (378)
+++.+...-.++++++|+|||+||++|+.++|.+.++++++.+ ++.++.|+.+.+
T Consensus 7 ~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T cd03009 7 DGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRE 86 (131)
T ss_pred CCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHH
Confidence 3333333334789999999999999999999999999888764 566777766543
Q ss_pred --HHHHHHcCCCCCcEEEEEe-CCeEeee
Q 017071 117 --KDLAKEYNILAYPTLYLFV-AGVRQFQ 142 (378)
Q Consensus 117 --~~~~~~~~v~~~Pt~~~~~-~g~~~~~ 142 (378)
..++++|+|.++|++++++ +|+++.+
T Consensus 87 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 87 RRSRLNRTFKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCEEcc
Confidence 4578899999999999998 8865543
No 84
>PHA02125 thioredoxin-like protein
Probab=99.50 E-value=2.4e-13 Score=96.00 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=59.0
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCC-CCHHHHHHH
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAW 155 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~ 155 (378)
++.|||+||++|+.+.|.++++. +.++.||++++.+++++|+|.++||++ +|+.+.++.|. .+..+|.+-
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999997653 468999999999999999999999987 68777888885 444666544
No 85
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.48 E-value=1.7e-13 Score=108.59 Aligned_cols=71 Identities=23% Similarity=0.367 Sum_probs=59.4
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC---CcEEEEEeCcCc-------------------------HHHHHH
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLE-------------------------KDLAKE 122 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~-------------------------~~~~~~ 122 (378)
.++++++|+|||+||++|+.++|.++++++++++ ++.++.|+++.+ ..+++.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 3689999999999999999999999999988875 477777777653 246677
Q ss_pred cCCCCCcEEEEEe-CCeEee
Q 017071 123 YNILAYPTLYLFV-AGVRQF 141 (378)
Q Consensus 123 ~~v~~~Pt~~~~~-~g~~~~ 141 (378)
|+|.++|++++++ +|+++.
T Consensus 95 ~~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred cCCCCCCEEEEECCCCCEEc
Confidence 9999999999998 786543
No 86
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.48 E-value=3.3e-13 Score=95.44 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=61.0
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCC-CCHHHHHHHH
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAWV 156 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~i 156 (378)
|.|||+||++|+.+.|.+++++++++..+.+..|| +.+.+.+||+.++||+++ +|+.+ +.|. .+.+.+.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 78999999999999999999999998788888887 455588999999999999 88665 7775 4557777765
No 87
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.48 E-value=2.7e-13 Score=114.50 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=81.0
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC-------c----HHHHHHc
Q 017071 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKEY 123 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~~~~ 123 (378)
..+.+++++.+...-.++++++|+|||+||++|++++|.+.++++++++ ++.++.|+|++ + ...++++
T Consensus 22 f~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~ 101 (199)
T PTZ00056 22 YTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKN 101 (199)
T ss_pred eEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHc
Confidence 3455566665553334789999999999999999999999999999987 79999998742 1 2334444
Q ss_pred CC------------------------------------CCCc---EEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHhc
Q 017071 124 NI------------------------------------LAYP---TLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 124 ~v------------------------------------~~~P---t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (378)
++ .++| +.++++ +|+++.++.|..+.+.+.+.|.+++.
T Consensus 102 ~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 102 KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 42 1122 678887 99999999999999999999988873
No 88
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.47 E-value=3.6e-12 Score=123.06 Aligned_cols=206 Identities=14% Similarity=0.219 Sum_probs=154.1
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEe--cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcHHHHHHcCCC--CCcE
Q 017071 56 KDVVSLNGKNFSEFMGKNRNVMVMFY--ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL--AYPT 130 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~F~--a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~--~~Pt 130 (378)
..+..++..++......+ +.++.|+ .....+|+.+...+.++++++.+ .+.|+.+|+++.+.+++.+|+. .+|+
T Consensus 217 p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~ 295 (462)
T TIGR01130 217 PLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPA 295 (462)
T ss_pred CceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCce
Confidence 355677888887777554 5555444 34667799999999999999996 8999999999999999999998 6999
Q ss_pred EEEEe-CCeEeeeeeC-CCCHHHHHHHHHHHhcCC-----------------cccCCCHHHHHHhh-ccCCeEEEEEEcC
Q 017071 131 LYLFV-AGVRQFQFFG-ERTRDVISAWVREKMTLG-----------------TYSITTTDEAERIL-TVESKLVLGFLHD 190 (378)
Q Consensus 131 ~~~~~-~g~~~~~~~g-~~~~~~l~~~i~~~~~~~-----------------~~~i~~~~~~~~~~-~~~~~~~v~f~~~ 190 (378)
+++++ +|.....+.+ ..+.+.|.+|+++.+... +..+ +.+++++.+ +.+..++|.|+++
T Consensus 296 ~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l-~~~~f~~~v~~~~~~vlv~f~a~ 374 (462)
T TIGR01130 296 VAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVL-VGKNFDEIVLDETKDVLVEFYAP 374 (462)
T ss_pred EEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEe-eCcCHHHHhccCCCeEEEEEECC
Confidence 99998 5533455555 789999999999987422 2222 234555554 4577899999999
Q ss_pred CCCcc---HHHHHHHh-ccCC---ceeEEEEc--cHHHHhhcCCCCCCCCCeEEEeecCCC-CccccCCCCCHHHHHHHH
Q 017071 191 LEGME---SEELAAAS-KLHS---DVNFYQTT--SADVAEFFHIHPKSKRPALIFLHLEAG-KATPFRHQFTRLAIANFV 260 (378)
Q Consensus 191 ~~~~~---~~~~~~~a-~~~~---~~~f~~~~--~~~~~~~~~i~~~~~~P~i~~~~~~~~-~~~~y~g~~~~~~l~~fi 260 (378)
||++. .+.+..++ .+.+ .+.|+... ..++.. +++.. +|++++|+.+.. .+..|.|..+.+.|.+||
T Consensus 375 wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~-~~i~~---~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l 450 (462)
T TIGR01130 375 WCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP-FEVEG---FPTIKFVPAGKKSEPVPYDGDRTLEDFSKFI 450 (462)
T ss_pred CCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC-CCccc---cCEEEEEeCCCCcCceEecCcCCHHHHHHHH
Confidence 99874 45566666 3444 57777542 233444 88876 999999998765 467899999999999999
Q ss_pred HhcCCCc
Q 017071 261 THTKHPL 267 (378)
Q Consensus 261 ~~~~~P~ 267 (378)
.++....
T Consensus 451 ~~~~~~~ 457 (462)
T TIGR01130 451 AKHATFP 457 (462)
T ss_pred HhcCCCC
Confidence 9986443
No 89
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.47 E-value=3.7e-13 Score=100.14 Aligned_cols=66 Identities=32% Similarity=0.549 Sum_probs=56.4
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhc--CCcEEEEEeCcCc-------------------------HHHHHHcCC
Q 017071 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLE-------------------------KDLAKEYNI 125 (378)
Q Consensus 73 ~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~-------------------------~~~~~~~~v 125 (378)
||+++|+|||+||++|+++.|.+.++.++++ +++.++.|+++++ ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 6899999999999999999999999999999 5899999988754 347788999
Q ss_pred CCCcEEEEEe-CCe
Q 017071 126 LAYPTLYLFV-AGV 138 (378)
Q Consensus 126 ~~~Pt~~~~~-~g~ 138 (378)
.++|++++++ +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999999 774
No 90
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.47 E-value=4.6e-13 Score=115.12 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=77.9
Q ss_pred EcChhcHHHHhcCCCcE-EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCe
Q 017071 60 SLNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 60 ~l~~~~~~~~~~~~~~~-lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 138 (378)
.++.+..+.+..-.+++ ++.|||+||++|+.+.|.+++++.+. +++.+..+|.+++++++++|+|.++||++++++|+
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence 34444444433334454 55599999999999999999999885 47889999999999999999999999999998884
Q ss_pred EeeeeeCCCCHHHHHHHHHH
Q 017071 139 RQFQFFGERTRDVISAWVRE 158 (378)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~ 158 (378)
. +.|..+.+++.+|+.+
T Consensus 198 ~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 E---FVGAYPEEQFLEYILS 214 (215)
T ss_pred E---EECCCCHHHHHHHHHh
Confidence 3 8999999999999875
No 91
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.46 E-value=3.5e-13 Score=131.50 Aligned_cols=97 Identities=25% Similarity=0.438 Sum_probs=81.8
Q ss_pred ChhcHHHHh----cCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCcEEEEEeCcC----cHHHHHHcCCCCCcE
Q 017071 62 NGKNFSEFM----GKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPT 130 (378)
Q Consensus 62 ~~~~~~~~~----~~~~~~lv~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt 130 (378)
+.+++++.+ .++|+++|+|||+||++|+.+.|.. .++.+.++ ++.++++|+++ +.+++++|++.++||
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 455666554 4579999999999999999999875 67777776 68999999985 368999999999999
Q ss_pred EEEEe-CCeE--eeeeeCCCCHHHHHHHHHHH
Q 017071 131 LYLFV-AGVR--QFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 131 ~~~~~-~g~~--~~~~~g~~~~~~l~~~i~~~ 159 (378)
+++|+ +|++ ..++.|..+.+++.+++++.
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99998 8876 46889999999999999874
No 92
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.46 E-value=5.8e-13 Score=114.28 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=83.7
Q ss_pred cCCCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC-------c----HHHH-
Q 017071 54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLA- 120 (378)
Q Consensus 54 ~~~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~- 120 (378)
++..+.+++++.+...-.++++++|+|||+||++|+.++|.++++++++++ ++.++.|+++. + .+.+
T Consensus 80 PdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~ 159 (236)
T PLN02399 80 HDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFAC 159 (236)
T ss_pred CceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHH
Confidence 334555667766554334689999999999999999999999999999987 79999999741 1 1222
Q ss_pred HHcC----------------------------------CCCCcEEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHhc
Q 017071 121 KEYN----------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 121 ~~~~----------------------------------v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (378)
++++ +...|+.++++ +|+++.+|.|..+.++|.+.|++++.
T Consensus 160 ~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 160 TRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred HhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 2222 12358999998 99999999999999999999988763
No 93
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.46 E-value=4.6e-13 Score=104.79 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=74.4
Q ss_pred cEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEe---------------------CcCc
Q 017071 58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD---------------------AYLE 116 (378)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd---------------------~~~~ 116 (378)
+.+++++.+.....++++++|+||++||++|+.+.|.+.++++.+. +..+.+| ++.+
T Consensus 5 l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 5 ATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred eecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 4456666666555567999999999999999999999999987742 2222222 2345
Q ss_pred HHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHH
Q 017071 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW 155 (378)
Q Consensus 117 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 155 (378)
..++++|+|.++|+++++++|++...+.|..+.+.|.+.
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 679999999999999999944488899999999988753
No 94
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.46 E-value=7.3e-13 Score=116.96 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=73.9
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC-----------cHHHHHHcCCCCCcEEEEEeC-CeE
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFVA-GVR 139 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~~~-g~~ 139 (378)
.++++||+|||+||++|+.++|.+++++++++ +.+..|+.|. +..++++|||.++||++++++ |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 57899999999999999999999999999985 6666666654 457899999999999999994 544
Q ss_pred ee-eeeCCCCHHHHHHHHHHHhc
Q 017071 140 QF-QFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 140 ~~-~~~g~~~~~~l~~~i~~~~~ 161 (378)
+. ...|..+.++|.+.+.....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 44 56699999999999887654
No 95
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.44 E-value=8.9e-13 Score=110.82 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=72.0
Q ss_pred CCcEEcChhcHHH--HhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEe-------------C-----cC
Q 017071 56 KDVVSLNGKNFSE--FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-------------A-----YL 115 (378)
Q Consensus 56 ~~v~~l~~~~~~~--~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd-------------~-----~~ 115 (378)
..+.+++++++.- ...++++++|+|||+||++|+++.|.+.++.++.+.++.++..| . ..
T Consensus 55 f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~ 134 (189)
T TIGR02661 55 FNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVV 134 (189)
T ss_pred cEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeec
Confidence 3555566665543 33478999999999999999999999999987653344333311 0 11
Q ss_pred cHHHHHHcCCCCCcEEEEEe-CCeEeeeeeCC-CCHHHHHHHHHHH
Q 017071 116 EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGE-RTRDVISAWVREK 159 (378)
Q Consensus 116 ~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~-~~~~~l~~~i~~~ 159 (378)
+.++++.|++.++|+.++++ +|++..+ |. ...+.+.+.++..
T Consensus 135 ~~~i~~~y~v~~~P~~~lID~~G~I~~~--g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 135 SAEIGMAFQVGKIPYGVLLDQDGKIRAK--GLTNTREHLESLLEAD 178 (189)
T ss_pred hhHHHHhccCCccceEEEECCCCeEEEc--cCCCCHHHHHHHHHHH
Confidence 35678899999999999998 8866543 43 4566777777644
No 96
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.43 E-value=8.4e-13 Score=101.67 Aligned_cols=85 Identities=33% Similarity=0.469 Sum_probs=72.1
Q ss_pred cChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCc-----------------------
Q 017071 61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------- 116 (378)
Q Consensus 61 l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~----------------------- 116 (378)
++++.+...-..+++++|.||++||++|+...+.+.++.+++++ ++.++.|+++.+
T Consensus 7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (116)
T cd02966 7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPD 86 (116)
T ss_pred CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCc
Confidence 44444443333589999999999999999999999999999864 799999999886
Q ss_pred HHHHHHcCCCCCcEEEEEe-CCeEeeeeeC
Q 017071 117 KDLAKEYNILAYPTLYLFV-AGVRQFQFFG 145 (378)
Q Consensus 117 ~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g 145 (378)
..+++.|++.++|++++++ +|+.+.++.|
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred chHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 7889999999999999998 8988888776
No 97
>PLN02412 probable glutathione peroxidase
Probab=99.42 E-value=2.3e-12 Score=106.03 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=81.5
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC-------c-HHH----HHH
Q 017071 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E-KDL----AKE 122 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-------~-~~~----~~~ 122 (378)
..+.+++++.+...-.++++++|+|||+||++|++++|.+.++.+++++ ++.++.|+++. . .++ +++
T Consensus 12 f~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~ 91 (167)
T PLN02412 12 FTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTR 91 (167)
T ss_pred eEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHc
Confidence 3444556655543333689999999999999999999999999999987 79999998742 1 121 122
Q ss_pred cC----------------------------------CCCCcEEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHhc
Q 017071 123 YN----------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 123 ~~----------------------------------v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (378)
++ |.+.|+.++++ +|+++.++.|..+.+++.+.|++++.
T Consensus 92 ~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 92 FKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred cCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 11 34468999997 99999999999999999999988764
No 98
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.41 E-value=1.7e-12 Score=104.87 Aligned_cols=88 Identities=28% Similarity=0.395 Sum_probs=73.2
Q ss_pred cChhcHHHHhcCCCcEEEEEecC-CChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCc---------------------H
Q 017071 61 LNGKNFSEFMGKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------K 117 (378)
Q Consensus 61 l~~~~~~~~~~~~~~~lv~F~a~-wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~---------------------~ 117 (378)
.+++.+...-.++++++|.||++ ||++|+.++|.+.++++.+++ ++.++.|..+.+ .
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~ 95 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDG 95 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTS
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHH
Confidence 55555553335899999999999 999999999999999999776 688888876543 4
Q ss_pred HHHHHcCCC---------CCcEEEEEe-CCeEeeeeeCCCC
Q 017071 118 DLAKEYNIL---------AYPTLYLFV-AGVRQFQFFGERT 148 (378)
Q Consensus 118 ~~~~~~~v~---------~~Pt~~~~~-~g~~~~~~~g~~~ 148 (378)
.+.++|++. ++|++++++ +|+++..+.|..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 96 ALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 678899998 999999998 9999999988765
No 99
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.41 E-value=1.1e-12 Score=101.16 Aligned_cols=69 Identities=25% Similarity=0.330 Sum_probs=54.7
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCc---C-----------------cHHHHHHcCCCCCcEE
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY---L-----------------EKDLAKEYNILAYPTL 131 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~---~-----------------~~~~~~~~~v~~~Pt~ 131 (378)
++++++|.||++||++|+++.|.++++++++++++.++.+.-+ + +.+++++|++.++|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 4899999999999999999999999999888766766655211 1 1346677888899999
Q ss_pred EEEe-CCeEe
Q 017071 132 YLFV-AGVRQ 140 (378)
Q Consensus 132 ~~~~-~g~~~ 140 (378)
++++ +|++.
T Consensus 100 ~vid~~G~v~ 109 (114)
T cd02967 100 VLLDEAGVIA 109 (114)
T ss_pred EEECCCCeEE
Confidence 9998 78543
No 100
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.40 E-value=1.5e-12 Score=135.39 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=79.1
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeC---------------------------cCcHHHHHHc
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA---------------------------YLEKDLAKEY 123 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~ 123 (378)
++++++|+|||+||++|++++|.++++++++++ ++.++.|.+ |.+..+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 689999999999999999999999999999987 588887742 2244678899
Q ss_pred CCCCCcEEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHh
Q 017071 124 NILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 124 ~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (378)
+|.++|++++++ +|+++.++.|....+.+.+++...+
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence 999999999996 9999999999999999999999876
No 101
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.40 E-value=1.9e-12 Score=101.69 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=64.9
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCc---------------------------CcHHHHHHc
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------------LEKDLAKEY 123 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~---------------------------~~~~~~~~~ 123 (378)
++++++|+||++||++|+.++|.++++++++++ ++.++.|+.+ .+..+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 679999999999999999999999999999986 6888888642 124567889
Q ss_pred CCCCCcEEEEEe-CCeEeeeeeCC
Q 017071 124 NILAYPTLYLFV-AGVRQFQFFGE 146 (378)
Q Consensus 124 ~v~~~Pt~~~~~-~g~~~~~~~g~ 146 (378)
++.++|++++++ +|+++..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999998 89888888875
No 102
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.36 E-value=6.7e-12 Score=102.03 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=76.8
Q ss_pred EEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCc--------Cc---HHHHHH-cC-
Q 017071 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY--------LE---KDLAKE-YN- 124 (378)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~--------~~---~~~~~~-~~- 124 (378)
.+++++.+...-.++++++|+|||+||++|+.++|.+.++++++++ ++.++.|+|. .. .+.+++ ++
T Consensus 8 ~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~ 87 (153)
T TIGR02540 8 KDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGV 87 (153)
T ss_pred ECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCC
Confidence 3445555543334789999999999999999999999999999987 8999999862 11 222322 22
Q ss_pred ----------------------C---CCCcE----EEEEe-CCeEeeeeeCCCCHHHHHHHHHHH
Q 017071 125 ----------------------I---LAYPT----LYLFV-AGVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 125 ----------------------v---~~~Pt----~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
+ .++|+ .++++ +|+++..+.|..+.+.|.+.|++.
T Consensus 88 ~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 88 TFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 1 24786 88887 999999999999999999888765
No 103
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.36 E-value=2.2e-11 Score=93.84 Aligned_cols=105 Identities=7% Similarity=0.144 Sum_probs=89.9
Q ss_pred EcChhcHHHHhcCCCcEEEEEecC--CChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeC
Q 017071 60 SLNGKNFSEFMGKNRNVMVMFYAN--WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (378)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv~F~a~--wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 136 (378)
.++..+++..+..+...+|.|-.+ -++.+....-.+++++++|.+ ++.+++||++++++++.+|||.++||+++|++
T Consensus 21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fkd 100 (132)
T PRK11509 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTG 100 (132)
T ss_pred ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEEC
Confidence 456677888886666665555432 467777888899999999985 59999999999999999999999999999999
Q ss_pred CeEeeeeeCCCCHHHHHHHHHHHhcCCc
Q 017071 137 GVRQFQFFGERTRDVISAWVREKMTLGT 164 (378)
Q Consensus 137 g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (378)
|+.+.+..|.++.+.+.+||.+.++.+.
T Consensus 101 Gk~v~~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 101 GNYRGVLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred CEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence 9999999999999999999999987654
No 104
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.35 E-value=3e-12 Score=103.93 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=70.8
Q ss_pred EcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC-------c----HHHHHH-cC--
Q 017071 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKE-YN-- 124 (378)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~~~-~~-- 124 (378)
+++++.+...-.++++++|+|||+||+ |+.++|.++++++++++ ++.++.|+++. . .+.+++ ++
T Consensus 9 d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~ 87 (152)
T cd00340 9 DIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVT 87 (152)
T ss_pred CCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCC
Confidence 344444443333689999999999999 99999999999999976 79999997642 1 123332 22
Q ss_pred ---------------------CCCCc-----------EEEEEe-CCeEeeeeeCCCCHHHHHHH
Q 017071 125 ---------------------ILAYP-----------TLYLFV-AGVRQFQFFGERTRDVISAW 155 (378)
Q Consensus 125 ---------------------v~~~P-----------t~~~~~-~g~~~~~~~g~~~~~~l~~~ 155 (378)
+.++| |+++++ +|+++.++.|..+.+++.+.
T Consensus 88 fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 88 FPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred ceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23466 688887 99999999999998887653
No 105
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.34 E-value=2.1e-10 Score=96.32 Aligned_cols=167 Identities=20% Similarity=0.316 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCC-eEeeeeeCC-CCHHHHHHHHHHHhcCCcccC
Q 017071 90 KLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQFFGE-RTRDVISAWVREKMTLGTYSI 167 (378)
Q Consensus 90 ~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g~-~~~~~l~~~i~~~~~~~~~~i 167 (378)
.+...|.++|+.+.+.+.|+.+. +.++++++++.. |++++++++ +....|.|. .+.+.|.+||....-|.+.++
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~ 82 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL 82 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence 45678899999999889999988 778999999999 999999964 457889998 899999999999999999998
Q ss_pred CCHHHHHHhhccCCe-EEEEEEcCCCC---ccHHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeec
Q 017071 168 TTTDEAERILTVESK-LVLGFLHDLEG---MESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (378)
Q Consensus 168 ~~~~~~~~~~~~~~~-~~v~f~~~~~~---~~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~ 239 (378)
+ .+.+..+.....+ +++.|...... .....+..+| +.++++.|..+ ..+.+.+.+|++. ...|+++++..
T Consensus 83 t-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~-~~~P~~vi~~~ 160 (184)
T PF13848_consen 83 T-PENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDE-DDLPALVIFDS 160 (184)
T ss_dssp S-TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTT-SSSSEEEEEET
T ss_pred c-hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCC-ccCCEEEEEEC
Confidence 5 5788888888765 45444433211 2334556677 77788888865 3457889999984 45899999996
Q ss_pred CCCCc-cccCCCCCHHHHHHHHHh
Q 017071 240 EAGKA-TPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 240 ~~~~~-~~y~g~~~~~~l~~fi~~ 262 (378)
..... ..+.|.++.++|.+|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 161 NKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCCcEEcCCCCCCCHHHHHHHhcC
Confidence 54332 334788999999999974
No 106
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=99.30 E-value=3.5e-11 Score=89.80 Aligned_cols=95 Identities=21% Similarity=0.432 Sum_probs=85.7
Q ss_pred ccCCCHHHHHHhhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecCCCC
Q 017071 165 YSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (378)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~ 243 (378)
..+.+.++++.++..+++++|+||.+.+++.+..|..+| .+++.+.|+++.+++++++++++. |++++|++.++.
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~~----~~i~l~~~~~~~ 77 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVKP----GSVVLFKPFEEE 77 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCCC----CceEEeCCcccC
Confidence 467888999999999999999999999999999999988 677899999999999999998874 999999987778
Q ss_pred ccccCCCCCHHHHHHHHHhc
Q 017071 244 ATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 244 ~~~y~g~~~~~~l~~fi~~~ 263 (378)
+..|+|+++.++|.+||..+
T Consensus 78 ~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred CccCCCCCCHHHHHHHHHhC
Confidence 88999999999999999864
No 107
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.30 E-value=4.8e-11 Score=91.84 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=79.3
Q ss_pred HHHhcCCCcEEEEEecCCChhHHhhHHH-H--HHHHHHhcCCcEEEEEeCc--CcHHHHHHcCCCCCcEEEEEe--CCeE
Q 017071 67 SEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV--AGVR 139 (378)
Q Consensus 67 ~~~~~~~~~~lv~F~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~--~g~~ 139 (378)
+.+..++|+++|+|+++||++|+.+... | .++.+.++.++.+..+|.+ +..++++.|++.++|++++++ +|+.
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 3444678999999999999999999774 3 4566666668888888887 456899999999999999998 5889
Q ss_pred eeeeeCCCCHHHHHHHHHHHh
Q 017071 140 QFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (378)
+.+..|..+++.+.+.|.+..
T Consensus 91 l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHHH
Confidence 999999999999999888765
No 108
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.27 E-value=1.6e-11 Score=84.83 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=53.2
Q ss_pred EEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCe
Q 017071 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 76 ~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 138 (378)
-++.||++||++|+.+.+.++++++.. .++.+..+|.+++++++++||+.++||+++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~ 61 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK 61 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence 367899999999999999999998764 379999999999999999999999999865 553
No 109
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=99.25 E-value=1e-10 Score=87.87 Aligned_cols=97 Identities=13% Similarity=0.263 Sum_probs=86.5
Q ss_pred cccCCCHHHHHHhhc-cCCeEEEEEEcCCCCccHHHHHHHh-ccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecCC
Q 017071 164 TYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA 241 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~-~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~ 241 (378)
+..|.+.++++.+++ .++..+|+||.+..++.++.|.++| .++.++.|+++.++++.+.+++.. |+++++++.+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~~----~~i~l~~~~~ 77 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLKM----NEVDFYEPFM 77 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCCC----CcEEEeCCCC
Confidence 567889999999999 8999999999998889999999988 677999999999999999998874 9999998866
Q ss_pred CCcccc-CCCCCHHHHHHHHHhcC
Q 017071 242 GKATPF-RHQFTRLAIANFVTHTK 264 (378)
Q Consensus 242 ~~~~~y-~g~~~~~~l~~fi~~~~ 264 (378)
+....| .|..+.+.|.+||..+.
T Consensus 78 e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 78 EEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCcccCCCCCCHHHHHHHHHHhc
Confidence 677889 88889999999998764
No 110
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.24 E-value=7.6e-11 Score=85.74 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=65.0
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHH
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (378)
.+..-+..|+++||++|....+.++++++.+. ++.+..+|.++.++++++|||.++||+++ +|+... .|..+.++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e 85 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEE 85 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHH
Confidence 45556888999999999999999999998865 79999999999999999999999999965 786544 58666665
Q ss_pred HH
Q 017071 152 IS 153 (378)
Q Consensus 152 l~ 153 (378)
+.
T Consensus 86 ~~ 87 (89)
T cd03026 86 IL 87 (89)
T ss_pred Hh
Confidence 43
No 111
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=99.23 E-value=1.2e-10 Score=87.85 Aligned_cols=95 Identities=18% Similarity=0.312 Sum_probs=84.1
Q ss_pred cccCCCHHHHHHhhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeec---
Q 017071 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHL--- 239 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~--- 239 (378)
+..+.+.++++.++..++..+|+||.+..++.++.|..+| .+++++.|+++.+.++.+.+++ . |++++|++
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~----~~ivl~~p~~~ 76 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY-G----EGVVLFRPPRL 76 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC-C----CceEEEechhh
Confidence 4678899999999999999999999998888999999988 6779999999999999999998 5 88999944
Q ss_pred ---CCCCccccCCCCCHHHHHHHHHhc
Q 017071 240 ---EAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 240 ---~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
.++....|+|+++.+.|.+||+.+
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 456777899999999999999876
No 112
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.23 E-value=1.7e-10 Score=95.74 Aligned_cols=95 Identities=19% Similarity=0.274 Sum_probs=76.3
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC-----------------------------cHHHHH
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-----------------------------EKDLAK 121 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-----------------------------~~~~~~ 121 (378)
+++++||+||++||+.|...++.+.++.+++++ ++.++.|.++. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 689999999999999999999999999999975 78999988753 234677
Q ss_pred HcCCCCCcEEEEEe-CCeEeeee---------eCCCCHHHHHHHHHHHhcCCccc
Q 017071 122 EYNILAYPTLYLFV-AGVRQFQF---------FGERTRDVISAWVREKMTLGTYS 166 (378)
Q Consensus 122 ~~~v~~~Pt~~~~~-~g~~~~~~---------~g~~~~~~l~~~i~~~~~~~~~~ 166 (378)
.|++...|++++++ +|+++... .+..+.+.+.+-|...+......
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 89999999999998 88766442 12346788998888887555443
No 113
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.23 E-value=7.2e-11 Score=110.99 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=82.8
Q ss_pred EEcChh-cHHHHhcCCC--cEEEEEecCCChhHHhhHHHHHH---HHHHhcCCcEEEEEeCcCc----HHHHHHcCCCCC
Q 017071 59 VSLNGK-NFSEFMGKNR--NVMVMFYANWCYWSKKLAPEFAA---AAKMLKGEADLVMVDAYLE----KDLAKEYNILAY 128 (378)
Q Consensus 59 ~~l~~~-~~~~~~~~~~--~~lv~F~a~wC~~C~~~~p~~~~---~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~ 128 (378)
..++.. .+++.+.+++ ||+|+|||+||-.||.+.+..-. .+.+.. +++..++|.+++ .++-++||+-|.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 445555 7888886665 99999999999999999997642 223333 799999999865 567889999999
Q ss_pred cEEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHh
Q 017071 129 PTLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (378)
|++++|+ +|++.....|..+.+.+.+++++..
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 9999999 8888878999999999999998753
No 114
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.22 E-value=3.4e-11 Score=92.81 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=57.5
Q ss_pred HHHHhcCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEe-CCeEee
Q 017071 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGVRQF 141 (378)
Q Consensus 66 ~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~ 141 (378)
++.+..++|+++|+|+++||++|+.+...+ .++.+..+.++..+.++.+....-....+ .++||+++++ +|+.+.
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~ 94 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRA 94 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcc
Confidence 344557899999999999999999999875 33455554467666777652211111234 6899999998 888877
Q ss_pred eeeCCCC
Q 017071 142 QFFGERT 148 (378)
Q Consensus 142 ~~~g~~~ 148 (378)
+..|..+
T Consensus 95 ~i~Gy~~ 101 (130)
T cd02960 95 DITGRYS 101 (130)
T ss_pred ccccccc
Confidence 7777543
No 115
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.22 E-value=8.4e-11 Score=98.38 Aligned_cols=104 Identities=12% Similarity=0.121 Sum_probs=76.5
Q ss_pred CcEEcChhcHHHHhcCCCcE-EEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC-------c-HH---H-HHH
Q 017071 57 DVVSLNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E-KD---L-AKE 122 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~-lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-------~-~~---~-~~~ 122 (378)
.+.+++++.+...-.+++++ ++.+||+||++|++++|.++++++++++ ++.++.|+++. + .+ . .++
T Consensus 24 ~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~ 103 (183)
T PTZ00256 24 EAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKK 103 (183)
T ss_pred EeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHh
Confidence 44455665554333467865 4566999999999999999999999987 79999998741 0 11 1 111
Q ss_pred ------------------------------------cCCCCCcE---EEEEe-CCeEeeeeeCCCCHHHHHHHHHHHh
Q 017071 123 ------------------------------------YNILAYPT---LYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 123 ------------------------------------~~v~~~Pt---~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (378)
+++.++|+ .++++ +|+++.++.|..+.+.+.+.|.+.+
T Consensus 104 ~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 104 FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 13457794 57887 9999999999999999999888776
No 116
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.17 E-value=2.4e-10 Score=91.53 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=75.8
Q ss_pred EEcChhcHHHHhcCCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC---------------------
Q 017071 59 VSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------------------- 115 (378)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~lv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~--------------------- 115 (378)
.+++++.+...-.++++++|.|| +.||+.|..+.|.+.++.+++.+ ++.++.|..+.
T Consensus 9 ~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd03017 9 PDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDP 88 (140)
T ss_pred cCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECC
Confidence 33444444322235899999999 58999999999999999998875 68888876543
Q ss_pred cHHHHHHcCCCCC---------cEEEEEe-CCeEeeeeeCCCCHHHHHHHH
Q 017071 116 EKDLAKEYNILAY---------PTLYLFV-AGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 116 ~~~~~~~~~v~~~---------Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i 156 (378)
+..+++.||+... |++++++ +|++...+.|......+.+-+
T Consensus 89 ~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 89 DGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 3467888999988 9999998 899999999988777666543
No 117
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=9.3e-11 Score=95.45 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=76.2
Q ss_pred CcEEc-ChhcHHHHh--cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcHHHHHHcCCC------
Q 017071 57 DVVSL-NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL------ 126 (378)
Q Consensus 57 ~v~~l-~~~~~~~~~--~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~------ 126 (378)
.+..+ +++.+++.+ ++...|+|.|||.|.+.|+...|.+.+++.+|.. .+.|++||+...++.+++|+|+
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 45566 566666666 3456899999999999999999999999999987 8999999999999999999985
Q ss_pred CCcEEEEEeCCeEeeeee
Q 017071 127 AYPTLYLFVAGVRQFQFF 144 (378)
Q Consensus 127 ~~Pt~~~~~~g~~~~~~~ 144 (378)
..||+++|.+|+++.+..
T Consensus 205 QLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 205 QLPTYILFQKGKEVSRRP 222 (265)
T ss_pred cCCeEEEEccchhhhcCc
Confidence 589999999998887655
No 118
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.9e-09 Score=83.19 Aligned_cols=108 Identities=14% Similarity=0.252 Sum_probs=83.8
Q ss_pred HhcCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCcEEEEEeCcC----------------cHHHHHHcCCCCCc
Q 017071 69 FMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----------------EKDLAKEYNILAYP 129 (378)
Q Consensus 69 ~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~----------------~~~~~~~~~v~~~P 129 (378)
+.-.++..++.|-++.|+.|.++...+ .++.+.+.+.+.++.+|... ..++++.|+|+++|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 335689999999999999999998876 44566666678888888642 35899999999999
Q ss_pred EEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHhcCCcccCCCHHHHHHh
Q 017071 130 TLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERI 176 (378)
Q Consensus 130 t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~ 176 (378)
|+++|+ +|+.+....|.++++++...+.-.....-....+.+++..-
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ykd~~~dedf~kk 165 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYKDTKTDEDFTKK 165 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 999999 88999999999999999877765554444444444444433
No 119
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.13 E-value=1.9e-10 Score=82.77 Aligned_cols=69 Identities=30% Similarity=0.391 Sum_probs=54.5
Q ss_pred HHHHhcCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEe
Q 017071 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (378)
Q Consensus 66 ~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (378)
+.++..++++++|+|+|+||++|+.+...+ .++.+.+.+++.++.||.++.....+..+ .++|++++++
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 444557899999999999999999999887 45555466699999999987765443323 7799999986
No 120
>smart00594 UAS UAS domain.
Probab=99.12 E-value=8.2e-10 Score=85.85 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=71.9
Q ss_pred HHhcCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCcEEEEEeCc--CcHHHHHHcCCCCCcEEEEEe-CC----
Q 017071 68 EFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV-AG---- 137 (378)
Q Consensus 68 ~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~-~g---- 137 (378)
.+..++|+++|+|+++||+.|+.+.... .++.+.++.++.+..+|.+ +..+++.+|++.++|++.+++ +|
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~ 101 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRV 101 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCcee
Confidence 3446789999999999999999998754 4455566667888888865 446799999999999999998 55
Q ss_pred -eEeeeeeCCCCHHHHHHHH
Q 017071 138 -VRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 138 -~~~~~~~g~~~~~~l~~~i 156 (378)
..+.+..|..+.+++..++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 2466889999999998876
No 121
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.11 E-value=2.4e-11 Score=100.34 Aligned_cols=101 Identities=20% Similarity=0.387 Sum_probs=92.2
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcHHHHHHcCCCCCcEEEEEe
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 135 (378)
.+..++.+|+...+ ..-+++.|+||||+.|+...|.|+..+.--.+ ++.++.||.+.++.+.-+|-+...||++-.+
T Consensus 25 ~~~~~~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvk 102 (248)
T KOG0913|consen 25 KLTRIDEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK 102 (248)
T ss_pred eeEEecccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEee
Confidence 77889999999887 34589999999999999999999999877666 8999999999999999999999999999999
Q ss_pred CCeEeeeeeCCCCHHHHHHHHHHHh
Q 017071 136 AGVRQFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 136 ~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (378)
+| +..+|.|.++..++.+|+...-
T Consensus 103 DG-eFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 103 DG-EFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred cc-ccccccCcccchhHHHHHHhhh
Confidence 99 8889999999999999997653
No 122
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=99.09 E-value=1.2e-09 Score=82.54 Aligned_cols=97 Identities=14% Similarity=0.247 Sum_probs=83.6
Q ss_pred CcccCCCHHHHHHhhccC-CeEEEEEEcCCCCccHHHHHHHh-ccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEee--
Q 017071 163 GTYSITTTDEAERILTVE-SKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLH-- 238 (378)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~-- 238 (378)
++..+.+.++++.++... +..+|+||.+..+..+..|..+| .++.++.|+++.+.++.+++++.. |.+++|+
T Consensus 1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~~----~~vvl~rp~ 76 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVSP----GQLVVFQPE 76 (107)
T ss_pred CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCCC----CceEEECcH
Confidence 356788999999999887 89999999998778899999988 777999999999999999999874 8899994
Q ss_pred ----cCCCCccccCCC-CCHHH-HHHHHHhc
Q 017071 239 ----LEAGKATPFRHQ-FTRLA-IANFVTHT 263 (378)
Q Consensus 239 ----~~~~~~~~y~g~-~~~~~-l~~fi~~~ 263 (378)
..++....|+|. .+.++ |..||+.|
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 456788999988 67755 99999875
No 123
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.08 E-value=1.7e-09 Score=89.09 Aligned_cols=97 Identities=11% Similarity=0.098 Sum_probs=71.3
Q ss_pred EEcChhcHHHHhcCCCcEEEEEecCC-ChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC----------------------
Q 017071 59 VSLNGKNFSEFMGKNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---------------------- 115 (378)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~lv~F~a~w-C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---------------------- 115 (378)
.+.+++.+...-.++++++|+||++| |++|..++|.+.++++++. ++.++.|++|.
T Consensus 30 ~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~ 108 (167)
T PRK00522 30 VANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDF 108 (167)
T ss_pred EcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecC
Confidence 33444443322236889999999999 9999999999999999985 78888887642
Q ss_pred -cHHHHHHcCCCCCc---------EEEEEe-CCeEeeeeeCC-----CCHHHHHHHH
Q 017071 116 -EKDLAKEYNILAYP---------TLYLFV-AGVRQFQFFGE-----RTRDVISAWV 156 (378)
Q Consensus 116 -~~~~~~~~~v~~~P---------t~~~~~-~g~~~~~~~g~-----~~~~~l~~~i 156 (378)
...+++.||+.+.| ++++++ +|++...+.+. .+.+.+.+.+
T Consensus 109 ~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 109 RDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred CccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 23678899998877 999998 99887776432 3455555544
No 124
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.05 E-value=7.3e-10 Score=86.66 Aligned_cols=70 Identities=24% Similarity=0.533 Sum_probs=61.0
Q ss_pred CCCcEEEEEecC-CChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC---------------------cHHHHHHcCCC--
Q 017071 72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNIL-- 126 (378)
Q Consensus 72 ~~~~~lv~F~a~-wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~-- 126 (378)
.+++++|.||++ ||++|+...+.+.++.++++. ++.++.|..+. +..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 789999999999 999999999999999999987 78999888754 34678899998
Q ss_pred ----CCcEEEEEe-CCeEee
Q 017071 127 ----AYPTLYLFV-AGVRQF 141 (378)
Q Consensus 127 ----~~Pt~~~~~-~g~~~~ 141 (378)
.+|++++++ +|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 999999999 776543
No 125
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.04 E-value=3e-09 Score=86.62 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=73.3
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEecC-CChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC-------------------
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL------------------- 115 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a~-wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~------------------- 115 (378)
.+.+++++.+...-.++++++|.||++ ||+.|....+.+.++++++++ ++.++.|+.+.
T Consensus 14 ~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~ 93 (154)
T PRK09437 14 SLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLS 93 (154)
T ss_pred EeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEE
Confidence 344555555543334789999999986 688899999999999999876 78888887643
Q ss_pred --cHHHHHHcCCCCC------------cEEEEEe-CCeEeeeeeCCCCHHHHHH
Q 017071 116 --EKDLAKEYNILAY------------PTLYLFV-AGVRQFQFFGERTRDVISA 154 (378)
Q Consensus 116 --~~~~~~~~~v~~~------------Pt~~~~~-~g~~~~~~~g~~~~~~l~~ 154 (378)
...++++||+.+. |++++++ +|+++..|.|....+.+.+
T Consensus 94 D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 147 (154)
T PRK09437 94 DEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDV 147 (154)
T ss_pred CCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHH
Confidence 3457788888654 6788887 9999999998765555333
No 126
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.03 E-value=3.7e-09 Score=80.06 Aligned_cols=94 Identities=12% Similarity=0.183 Sum_probs=74.0
Q ss_pred ccCCCHHHHHHhhccCCeEEEEEEc--CCCCccHHHHHHHh-cc---CCceeEEEE--------ccHHHHhhcCCC--CC
Q 017071 165 YSITTTDEAERILTVESKLVLGFLH--DLEGMESEELAAAS-KL---HSDVNFYQT--------TSADVAEFFHIH--PK 228 (378)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~~v~f~~--~~~~~~~~~~~~~a-~~---~~~~~f~~~--------~~~~~~~~~~i~--~~ 228 (378)
..+ +.++++++++.++.++|.|++ +||+. .+.+..+| .+ ...+.++.+ .+.+++++|+|+ +
T Consensus 4 v~L-~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~g- 80 (116)
T cd03007 4 VDL-DTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKES- 80 (116)
T ss_pred eEC-ChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCC-
Confidence 344 568899999999999999999 99995 35555554 22 334666654 347899999998 5
Q ss_pred CCCCeEEEeecCC-CCccccCCC-CCHHHHHHHHHhc
Q 017071 229 SKRPALIFLHLEA-GKATPFRHQ-FTRLAIANFVTHT 263 (378)
Q Consensus 229 ~~~P~i~~~~~~~-~~~~~y~g~-~~~~~l~~fi~~~ 263 (378)
+|+|.+|+.++ ..+..|+|. ++.+.|.+||+++
T Consensus 81 --yPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 81 --YPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred --CCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99999999873 467899996 9999999999876
No 127
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.03 E-value=3.1e-09 Score=88.21 Aligned_cols=88 Identities=17% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC----------------------------cHHHHH
Q 017071 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (378)
Q Consensus 72 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 121 (378)
++++++|+|| ++||++|....|.+.++++++.+ ++.++.|.++. ...+++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5799999999 89999999999999999999976 67787776643 234567
Q ss_pred HcCCC------CCcEEEEEe-CCeEeeeeeCC----CCHHHHHHHHHHH
Q 017071 122 EYNIL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREK 159 (378)
Q Consensus 122 ~~~v~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~ 159 (378)
+||+. ..|++++++ +|++...+.+. .+.+++.+.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78886 578999999 99888888543 4667777777654
No 128
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.00 E-value=3.9e-09 Score=88.62 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=68.6
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC-------------------------cHHHHHHcC
Q 017071 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN 124 (378)
Q Consensus 72 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 124 (378)
++++++|+|| ++||++|..++|.+.++.+++.+ ++.++.|.++. +..+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 6889999999 99999999999999999998875 67777777553 235778899
Q ss_pred CC------CCcEEEEEe-CCeEeeeeeC----CCCHHHHHHHHHH
Q 017071 125 IL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVRE 158 (378)
Q Consensus 125 v~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~ 158 (378)
+. ..|++++++ +|++...+.+ .++.+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 86 469999998 8987776543 3477777776643
No 129
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.00 E-value=3e-09 Score=85.45 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=61.5
Q ss_pred CCCcEEEEEecCC-ChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC----------------------c-HHHHHHcCCCC
Q 017071 72 KNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----------------------E-KDLAKEYNILA 127 (378)
Q Consensus 72 ~~~~~lv~F~a~w-C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----------------------~-~~~~~~~~v~~ 127 (378)
.+++++|+||++| |++|+.++|.+.+++++++ ++.++.|+.+. . ..++++||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 6889999999999 6999999999999999986 78888887742 1 45778888863
Q ss_pred ------CcEEEEEe-CCeEeeeeeCC
Q 017071 128 ------YPTLYLFV-AGVRQFQFFGE 146 (378)
Q Consensus 128 ------~Pt~~~~~-~g~~~~~~~g~ 146 (378)
.|++++++ +|++...+.|.
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECC
Confidence 68999998 99888877764
No 130
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.96 E-value=5.8e-09 Score=84.35 Aligned_cols=74 Identities=15% Similarity=0.300 Sum_probs=56.3
Q ss_pred CCCcE-EEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC---------------------cHHHHHHcCCC--
Q 017071 72 KNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNIL-- 126 (378)
Q Consensus 72 ~~~~~-lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~v~-- 126 (378)
.++++ ++.||++||++|+.++|.+.++.+++.+ ++.++.|+.+. +..+.++||+.
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~ 101 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRS 101 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceec
Confidence 34555 4545699999999999999999999875 78888888653 34567778874
Q ss_pred ---------------------------CCcEEEEEe-CCeEeeeeeC
Q 017071 127 ---------------------------AYPTLYLFV-AGVRQFQFFG 145 (378)
Q Consensus 127 ---------------------------~~Pt~~~~~-~g~~~~~~~g 145 (378)
..|++++++ +|++...+.|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 102 LPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred CcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 688888887 7766666654
No 131
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.95 E-value=8.6e-09 Score=83.38 Aligned_cols=88 Identities=11% Similarity=0.287 Sum_probs=65.4
Q ss_pred EcChhcHHHHhcCC-CcEEEEEe-cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCc---------------------C
Q 017071 60 SLNGKNFSEFMGKN-RNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------L 115 (378)
Q Consensus 60 ~l~~~~~~~~~~~~-~~~lv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~---------------------~ 115 (378)
+.+++.+...-..+ ++++|.|| ++||+.|....|.+.++.+++++ ++.++.|+.+ .
T Consensus 14 ~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~ 93 (149)
T cd03018 14 DQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDF 93 (149)
T ss_pred CCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCC
Confidence 34444443222245 88888887 99999999999999999999875 7888887653 2
Q ss_pred c--HHHHHHcCCCC----C--cEEEEEe-CCeEeeeeeCCC
Q 017071 116 E--KDLAKEYNILA----Y--PTLYLFV-AGVRQFQFFGER 147 (378)
Q Consensus 116 ~--~~~~~~~~v~~----~--Pt~~~~~-~g~~~~~~~g~~ 147 (378)
+ ..+++.||+.. . |++++++ +|++...+.|..
T Consensus 94 ~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 94 WPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred CchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 3 56788888873 3 3888998 898888888753
No 132
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.95 E-value=4.1e-09 Score=81.21 Aligned_cols=82 Identities=28% Similarity=0.489 Sum_probs=69.4
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCc-CcHHHHHHcC--CCCCcEEEEEeCCeEeeeeeC--CC
Q 017071 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYN--ILAYPTLYLFVAGVRQFQFFG--ER 147 (378)
Q Consensus 73 ~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g--~~ 147 (378)
++++++.||++||++|+.++|.+.++++.+...+.+..+|.. .++.+...|+ +..+|++.++.+|.......| ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 789999999999999999999999999999877999999997 8899999999 999999998888866555555 34
Q ss_pred CHHHHHH
Q 017071 148 TRDVISA 154 (378)
Q Consensus 148 ~~~~l~~ 154 (378)
....+..
T Consensus 112 ~~~~~~~ 118 (127)
T COG0526 112 PKEALID 118 (127)
T ss_pred CHHHHHH
Confidence 4444443
No 133
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.94 E-value=1.2e-08 Score=85.16 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC-------------------------cHHHHHHcC
Q 017071 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN 124 (378)
Q Consensus 72 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 124 (378)
.+++++|.|| +.||+.|..+++.+.++.+++.+ ++.++.|+.|. +..++++||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 6789999999 99999999999999999999875 77777776543 356889999
Q ss_pred C----CCC--cEEEEEe-CCeEeeeee----CCCCHHHHHHHHHHH
Q 017071 125 I----LAY--PTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (378)
Q Consensus 125 v----~~~--Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (378)
+ .+. |++++++ +|++...+. ..++.+++.+.|...
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 366 9999998 997766553 236888888877544
No 134
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.91 E-value=3.2e-09 Score=83.41 Aligned_cols=70 Identities=21% Similarity=0.414 Sum_probs=58.2
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCC---cEEEEEeCcCc-------------------------HHHHHH
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE---ADLVMVDAYLE-------------------------KDLAKE 122 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~-------------------------~~~~~~ 122 (378)
-+||.+.++|-|.||++||.+.|.+.++.++.++. +-++-|+.|.+ .+++++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 36899999999999999999999999999888774 55555655432 468889
Q ss_pred cCCCCCcEEEEEe-CCeEe
Q 017071 123 YNILAYPTLYLFV-AGVRQ 140 (378)
Q Consensus 123 ~~v~~~Pt~~~~~-~g~~~ 140 (378)
|+|.++|++.+++ +|..+
T Consensus 111 y~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVV 129 (157)
T ss_pred cccCcCceeEEecCCCCEe
Confidence 9999999999998 88544
No 135
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.91 E-value=1.1e-08 Score=84.85 Aligned_cols=130 Identities=11% Similarity=0.062 Sum_probs=85.2
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC--------c---HHHHH-Hc
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------E---KDLAK-EY 123 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~--------~---~~~~~-~~ 123 (378)
.+.+++++.+...-.+++++||.|||+||+.|+ .+|.++++.++|++ ++.++.+.|++ . .+.|+ +|
T Consensus 9 ~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~ 87 (183)
T PRK10606 9 VVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTW 87 (183)
T ss_pred EeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHcc
Confidence 445566655553334789999999999999997 59999999999987 79999999852 1 33454 57
Q ss_pred CCCCCcEEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHhcCCc---------------------ccCCCHHHHHHhhccCC
Q 017071 124 NILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLGT---------------------YSITTTDEAERILTVES 181 (378)
Q Consensus 124 ~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~~---------------------~~i~~~~~~~~~~~~~~ 181 (378)
++. +|-+-=++ +|. ....+.+|+.+..+.+. ..| .=++.+|+-+.+
T Consensus 88 g~~-Fpv~~k~dvnG~---------~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i--~WNF~KFLv~~~ 155 (183)
T PRK10606 88 GVT-FPMFSKIEVNGE---------GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDI--LWNFEKFLVGRD 155 (183)
T ss_pred CCC-ceeEEEEccCCC---------CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcc--cccCEEEEECCC
Confidence 764 56443344 552 34567777776553111 011 124567776666
Q ss_pred eEEEEEEcCCCCccHHHH
Q 017071 182 KLVLGFLHDLEGMESEEL 199 (378)
Q Consensus 182 ~~~v~f~~~~~~~~~~~~ 199 (378)
-.+|..|.+...+..+.+
T Consensus 156 G~vv~r~~~~~~p~~~~i 173 (183)
T PRK10606 156 GQVIQRFSPDMTPEDPIV 173 (183)
T ss_pred CcEEEEECCCCCCCHHHH
Confidence 667778887776654333
No 136
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.88 E-value=1.3e-08 Score=81.33 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=63.3
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC----------------------cHHHHHHcCCCC
Q 017071 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------EKDLAKEYNILA 127 (378)
Q Consensus 72 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------~~~~~~~~~v~~ 127 (378)
.+++++|.|| +.||+.|....|.+.+++++++. ++.++.|..+. +..+++.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 6899999999 78999999999999999999854 68888877643 345677888886
Q ss_pred Cc---------EEEEEe-CCeEeeeeeCCCC
Q 017071 128 YP---------TLYLFV-AGVRQFQFFGERT 148 (378)
Q Consensus 128 ~P---------t~~~~~-~g~~~~~~~g~~~ 148 (378)
.| ++++++ +|+++..+.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 66 788888 7988888888653
No 137
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.87 E-value=2.7e-08 Score=84.46 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCCcEEE-EEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC---------------------------cHHHHHH
Q 017071 72 KNRNVMV-MFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (378)
Q Consensus 72 ~~~~~lv-~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~ 122 (378)
+++.++| .||++||+.|..+++.+.++++++++ ++.++.|+++. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 5676655 68999999999999999999999876 67777776652 3457788
Q ss_pred cCCC------CCcEEEEEe-CCeEeeee----eCCCCHHHHHHHHHHHh
Q 017071 123 YNIL------AYPTLYLFV-AGVRQFQF----FGERTRDVISAWVREKM 160 (378)
Q Consensus 123 ~~v~------~~Pt~~~~~-~g~~~~~~----~g~~~~~~l~~~i~~~~ 160 (378)
||+. .+|++++++ +|++.... .+.++.+++.+.|+.+.
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 8984 589999998 88765544 45689999988887654
No 138
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4.4e-08 Score=81.04 Aligned_cols=164 Identities=15% Similarity=0.200 Sum_probs=110.0
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHH
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (378)
.+.+..++.|||+||..|.++...++.+++.. .++.+++++.++.++++..+.+.+.|++.++..|+.+.+..|.....
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF 93 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence 47889999999999999999999999999988 58999999999999999999999999999999998888888876555
Q ss_pred HHHHH---HHHHh---c-CCcccCCC-----HHHHHHhhcc--CCeEEEEEEc-----CCCCccHHHHHHHhccCCceeE
Q 017071 151 VISAW---VREKM---T-LGTYSITT-----TDEAERILTV--ESKLVLGFLH-----DLEGMESEELAAASKLHSDVNF 211 (378)
Q Consensus 151 ~l~~~---i~~~~---~-~~~~~i~~-----~~~~~~~~~~--~~~~~v~f~~-----~~~~~~~~~~~~~a~~~~~~~f 211 (378)
....+ ..... . .....+.. .+.++..+.. +...++.|.. +.|+-.......+-....++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~ 173 (227)
T KOG0911|consen 94 LVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTI 173 (227)
T ss_pred HHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeE
Confidence 44333 22221 0 01111110 0112223322 2233444663 4566666666666555555554
Q ss_pred E-EEccHHHHhhcCC-CCCCCCCeEE
Q 017071 212 Y-QTTSADVAEFFHI-HPKSKRPALI 235 (378)
Q Consensus 212 ~-~~~~~~~~~~~~i-~~~~~~P~i~ 235 (378)
+ .-+++++++..+. ++.+.+|.+.
T Consensus 174 fdIL~DeelRqglK~fSdWPTfPQly 199 (227)
T KOG0911|consen 174 FDVLTDEELRQGLKEFSDWPTFPQLY 199 (227)
T ss_pred EeccCCHHHHHHhhhhcCCCCcccee
Confidence 4 5588888775543 3334456554
No 139
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.83 E-value=2.9e-08 Score=69.68 Aligned_cols=68 Identities=12% Similarity=0.178 Sum_probs=53.8
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHH----HHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHH
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (378)
+..|+++||++|+...+.+++ .++.+..+|+++++. +++.+++.++|++++. |+. ..| .+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence 467999999999999988865 268889999987754 5567999999999874 643 556 477888
Q ss_pred HHHH
Q 017071 153 SAWV 156 (378)
Q Consensus 153 ~~~i 156 (378)
.++|
T Consensus 70 ~~~i 73 (74)
T TIGR02196 70 DQLL 73 (74)
T ss_pred HHHh
Confidence 8876
No 140
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.82 E-value=3.1e-08 Score=75.44 Aligned_cols=94 Identities=11% Similarity=0.106 Sum_probs=72.6
Q ss_pred CCcccCCCHHHHHHh---hccCCeEEEEEEcCCCCcc---HHHHHHHh-ccCCceeEEEE---ccHHHH-hhcCCCCCCC
Q 017071 162 LGTYSITTTDEAERI---LTVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVA-EFFHIHPKSK 230 (378)
Q Consensus 162 ~~~~~i~~~~~~~~~---~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~~~-~~~~i~~~~~ 230 (378)
..+.+++ .+++++. ++.++.++|.||++||++. .+.|.++| .+.+.+.|+.+ .+.+++ ++|++.+
T Consensus 9 ~~v~~l~-~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~--- 84 (113)
T cd03006 9 SPVLDFY-KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFY--- 84 (113)
T ss_pred CCeEEec-hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcc---
Confidence 3455553 4555554 6788999999999999974 46688877 55666777765 466788 5899986
Q ss_pred CCeEEEeecCCCCccccCCCCCHHHHHHHH
Q 017071 231 RPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 231 ~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (378)
+|++++|+++. ....|.|.++.+.|..|+
T Consensus 85 ~PTl~lf~~g~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSR-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCc-cceEEeCCCCHHHHHhhC
Confidence 99999998765 678999999999999884
No 141
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.82 E-value=1.3e-08 Score=81.62 Aligned_cols=87 Identities=22% Similarity=0.265 Sum_probs=61.7
Q ss_pred EEcChhcHHHHhcCCCcEEEEEecCCChh-HHhhHHHHHHHHHHhcC----CcEEEEEeCcCc-----------------
Q 017071 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYW-SKKLAPEFAAAAKMLKG----EADLVMVDAYLE----------------- 116 (378)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~lv~F~a~wC~~-C~~~~p~~~~~~~~~~~----~~~~~~vd~~~~----------------- 116 (378)
.+.+++.++..-.++++++|.||++||++ |....+.+.++++++++ ++.++.|..+..
T Consensus 8 ~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~~ 87 (142)
T cd02968 8 TDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGPG 87 (142)
T ss_pred EcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 34444444322236899999999999997 99999999999998875 388888876421
Q ss_pred -----------HHHHHHcCCCC--------------CcEEEEEe-CCeEeeeeeC
Q 017071 117 -----------KDLAKEYNILA--------------YPTLYLFV-AGVRQFQFFG 145 (378)
Q Consensus 117 -----------~~~~~~~~v~~--------------~Pt~~~~~-~g~~~~~~~g 145 (378)
..+++.||+.. .|++++++ +|+++..|.|
T Consensus 88 ~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 88 WIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred cEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 23455666543 34678887 8877777654
No 142
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.81 E-value=6.4e-08 Score=72.63 Aligned_cols=92 Identities=4% Similarity=0.075 Sum_probs=73.7
Q ss_pred cccCCCHHHHHHhhccCCeEEEEEEcCCCCc---cHHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEE
Q 017071 164 TYSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIF 236 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~ 236 (378)
+..+ +.+++++.+...++++|.|+++||++ ..+.|.++| .+.+.+.|+.+ .++++++++++.. +|++++
T Consensus 3 ~~~l-~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~---~Pt~~~ 78 (101)
T cd03003 3 IVTL-DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNS---YPSLYV 78 (101)
T ss_pred eEEc-CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCc---cCEEEE
Confidence 4455 56788888888889999999999987 346677777 55666777754 5678999999986 999999
Q ss_pred eecCCCCccccCCCCCHHHHHHHH
Q 017071 237 LHLEAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 237 ~~~~~~~~~~y~g~~~~~~l~~fi 260 (378)
|+.+. ....|.|.++.+.|.+|.
T Consensus 79 ~~~g~-~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 79 FPSGM-NPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EcCCC-CcccCCCCCCHHHHHhhC
Confidence 98764 577899999999999873
No 143
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.81 E-value=2.8e-08 Score=74.74 Aligned_cols=91 Identities=12% Similarity=0.254 Sum_probs=74.5
Q ss_pred CHHHHHHhhcc-CCeEEEEEEcCCCCc---cHHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecC
Q 017071 169 TTDEAERILTV-ESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (378)
Q Consensus 169 ~~~~~~~~~~~-~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~ 240 (378)
+.+++++.+.. ++.++|.|+++||++ ..+.+.+++ .+.+++.|+.+ .++.++++|++.. +|++++|+.+
T Consensus 5 t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~---~Pt~~~~~~g 81 (103)
T PF00085_consen 5 TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKS---VPTIIFFKNG 81 (103)
T ss_dssp STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSS---SSEEEEEETT
T ss_pred CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCC---CCEEEEEECC
Confidence 45777778776 899999999999987 445666777 44448888866 5678999999997 9999999987
Q ss_pred CCCccccCCCCCHHHHHHHHHhc
Q 017071 241 AGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 241 ~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
. ....|.|.++.++|.+||++|
T Consensus 82 ~-~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 82 K-EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp E-EEEEEESSSSHHHHHHHHHHH
T ss_pred c-EEEEEECCCCHHHHHHHHHcC
Confidence 5 444999999999999999875
No 144
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.79 E-value=5.5e-08 Score=73.43 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=73.7
Q ss_pred CcccCCCHHHHHHhhc-cCCeEEEEEEcCCCCc---cHHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeE
Q 017071 163 GTYSITTTDEAERILT-VESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (378)
Q Consensus 163 ~~~~i~~~~~~~~~~~-~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i 234 (378)
.+.++ +.+++++.+. .+++++|.|+++||.+ ..+.|..++ .+.+.+.|+.+ .++++++++++.. +|++
T Consensus 2 ~v~~l-~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~---~Pt~ 77 (104)
T cd03004 2 SVITL-TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRA---YPTI 77 (104)
T ss_pred cceEc-CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCc---ccEE
Confidence 34555 4667777754 4668999999999987 356677777 55566777754 5778999999986 9999
Q ss_pred EEeecCCCCccccCCCCC-HHHHHHHH
Q 017071 235 IFLHLEAGKATPFRHQFT-RLAIANFV 260 (378)
Q Consensus 235 ~~~~~~~~~~~~y~g~~~-~~~l~~fi 260 (378)
++|+.+......|.|..+ .++|.+||
T Consensus 78 ~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 78 RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999988668889999886 99999885
No 145
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.77 E-value=8.7e-07 Score=87.28 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=133.2
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEe-CCeE-eeeeeCCCCH
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGVR-QFQFFGERTR 149 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~-~g~~-~~~~~g~~~~ 149 (378)
.+.+.++.|+.+.|..|.++...++++++ +.+++.+...|..++.+++++|++...|++.+++ +|+. -.+|.|...-
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 34557888999999999999999999985 4568888889999999999999999999999996 6533 4799999999
Q ss_pred HHHHHHHHHHhcC--CcccCCCHHHHHHhhccCCeE-EEEEEcCCCCccHHH---HHHHhccCCceeEE---EEccHHHH
Q 017071 150 DVISAWVREKMTL--GTYSITTTDEAERILTVESKL-VLGFLHDLEGMESEE---LAAASKLHSDVNFY---QTTSADVA 220 (378)
Q Consensus 150 ~~l~~~i~~~~~~--~~~~i~~~~~~~~~~~~~~~~-~v~f~~~~~~~~~~~---~~~~a~~~~~~~f~---~~~~~~~~ 220 (378)
.++..||...+.. .-..+ +.+..+.+.+-+++. +-.|..++|...... ...++....++..- ....++++
T Consensus 444 ~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 522 (555)
T TIGR03143 444 HELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLK 522 (555)
T ss_pred HhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHH
Confidence 9999999887633 33344 445555444444444 555679999875543 33444444445433 34678999
Q ss_pred hhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHH
Q 017071 221 EFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 221 ~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (378)
++|++.. .|++++- ++ ..+.|..+.++|.+||
T Consensus 523 ~~~~v~~---vP~~~i~----~~-~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 523 DEYGIMS---VPAIVVD----DQ-QVYFGKKTIEEMLELI 554 (555)
T ss_pred HhCCcee---cCEEEEC----CE-EEEeeCCCHHHHHHhh
Confidence 9999986 8999972 12 4577988999999886
No 146
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.76 E-value=9.3e-08 Score=72.70 Aligned_cols=93 Identities=22% Similarity=0.301 Sum_probs=72.3
Q ss_pred cccCCCHHHHHHhhccCCeEEEEEEcCCCCc---cHHHHHHHh-cc------CCceeEEEE---ccHHHHhhcCCCCCCC
Q 017071 164 TYSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KL------HSDVNFYQT---TSADVAEFFHIHPKSK 230 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~------~~~~~f~~~---~~~~~~~~~~i~~~~~ 230 (378)
+.++ +.+++++.++.++.++|.|+++||.+ ..+.+..++ .+ .+.+.|+.+ .+.+++++|++..
T Consensus 3 v~~l-~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~--- 78 (108)
T cd02996 3 IVSL-TSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK--- 78 (108)
T ss_pred eEEc-CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc---
Confidence 4455 56788888888889999999999986 345565555 22 124667654 5789999999997
Q ss_pred CCeEEEeecCCCCccccCCCCCHHHHHHHH
Q 017071 231 RPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 231 ~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (378)
+|++++|+.+......|.|.++.++|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999998764568899999999999986
No 147
>PRK15000 peroxidase; Provisional
Probab=98.76 E-value=8.4e-08 Score=81.15 Aligned_cols=87 Identities=16% Similarity=0.265 Sum_probs=70.7
Q ss_pred CCCcEEEEEecC-CChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC----------------------------cHHHHH
Q 017071 72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (378)
Q Consensus 72 ~~~~~lv~F~a~-wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 121 (378)
++++++|.||+. ||+.|..+++.+.++++++++ ++.++.|.+|. +..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 578999999995 999999999999999999976 78888877652 235677
Q ss_pred HcCCC------CCcEEEEEe-CCeEeeeeeC----CCCHHHHHHHHHH
Q 017071 122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVRE 158 (378)
Q Consensus 122 ~~~v~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~ 158 (378)
.||+. +.|++++++ +|++...+.| .++.+++.+.++.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 88987 699999999 9987776665 3677888777754
No 148
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.74 E-value=5.1e-08 Score=66.11 Aligned_cols=60 Identities=33% Similarity=0.634 Sum_probs=52.6
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHH---HcCCCCCcEEEEEeCC
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK---EYNILAYPTLYLFVAG 137 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~v~~~Pt~~~~~~g 137 (378)
++.||++||++|+++.+.+.++ +....++.+..++++....... .+++.++|++++++.|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4445589999999998887665 8999999999999876
No 149
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.71 E-value=1.5e-07 Score=80.23 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=69.5
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCc-----------CcHHHHHHcCCCCCcEEEEEe-CC-e
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-----------LEKDLAKEYNILAYPTLYLFV-AG-V 138 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~-----------~~~~~~~~~~v~~~Pt~~~~~-~g-~ 138 (378)
.++.-|+.||.+.|+.|+.+.|.+..+++++ ++.+..|+.| .+..+++++||..+|++++++ ++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 4678899999999999999999999999999 4666666665 468899999999999999999 44 3
Q ss_pred EeeeeeCCCCHHHHHHHH
Q 017071 139 RQFQFFGERTRDVISAWV 156 (378)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i 156 (378)
....-.|..+.++|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 444556999999988754
No 150
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.70 E-value=2.2e-07 Score=79.03 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=66.0
Q ss_pred cEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC---------------------------cHHHHHHcCCC
Q 017071 75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKEYNIL 126 (378)
Q Consensus 75 ~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~~v~ 126 (378)
.+|+.||++||+.|..+++.+.++++++++ ++.++.|+++. +..+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456689999999999999999999999976 78888887663 24678889875
Q ss_pred ----C----CcEEEEEe-CCeEeeeeeC----CCCHHHHHHHHHHH
Q 017071 127 ----A----YPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK 159 (378)
Q Consensus 127 ----~----~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~ 159 (378)
+ .|++++++ +|++...+.| .++.+++.+.|..+
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 35689998 8877766654 45777887777654
No 151
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.70 E-value=1.9e-07 Score=79.75 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=68.5
Q ss_pred CCCc-EEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC---------------------------cHHHHHH
Q 017071 72 KNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (378)
Q Consensus 72 ~~~~-~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~ 122 (378)
.+++ +|+.||++||+.|..+++.+.++++++.+ ++.++.|++|. +..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4665 46799999999999999999999999976 78888887764 2356788
Q ss_pred cCCC-------CCcEEEEEe-CCeEeeeee----CCCCHHHHHHHHHHH
Q 017071 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (378)
Q Consensus 123 ~~v~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (378)
||+. ..|++++++ +|++...+. ..++.+++.+.|..+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 689999999 897765542 236778888777653
No 152
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.70 E-value=1.2e-07 Score=67.27 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=50.3
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHH-----cCCCCCcEEEEEeCCeEeeeeeCCCCHHH
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE-----YNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (378)
++.||++||++|+++++.+.++ ++.+-.+|+++++..... +++.++|++ ++++|+... ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 5789999999999999988765 355667888887766655 389999997 577885433 344455
Q ss_pred HHHHH
Q 017071 152 ISAWV 156 (378)
Q Consensus 152 l~~~i 156 (378)
+.+.+
T Consensus 71 ~~~~l 75 (77)
T TIGR02200 71 VKAKL 75 (77)
T ss_pred HHHHh
Confidence 55544
No 153
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.3e-07 Score=73.65 Aligned_cols=93 Identities=12% Similarity=0.284 Sum_probs=74.7
Q ss_pred CCCHHHHH-HhhccCCeEEEEEEcCCCCc---cHHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEee
Q 017071 167 ITTTDEAE-RILTVESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLH 238 (378)
Q Consensus 167 i~~~~~~~-~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~ 238 (378)
+.+.++++ +.++++.+++|.|+++||+| ..+.+.+++ ++.+.++|+.+ .+.+++.+|+|+. .|++++|+
T Consensus 47 ~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~a---vPtvlvfk 123 (150)
T KOG0910|consen 47 VQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISA---VPTVLVFK 123 (150)
T ss_pred ccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceee---eeEEEEEE
Confidence 33555554 55677889999999999998 455666666 77889999976 6778999999997 99999999
Q ss_pred cCCCCccccCCCCCHHHHHHHHHhc
Q 017071 239 LEAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 239 ~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
.++ ....+-|..+.+.|.+||++.
T Consensus 124 nGe-~~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 124 NGE-KVDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred CCE-EeeeecccCCHHHHHHHHHHH
Confidence 885 456778888999999999864
No 154
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.67 E-value=2.9e-07 Score=80.38 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=68.6
Q ss_pred CCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC----------------------------cHHHHH
Q 017071 72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (378)
Q Consensus 72 ~~~~~lv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 121 (378)
+++++++.|| ++||+.|..++|.|.++.+++++ ++.++.|.+|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5677777777 89999999999999999999876 67777777653 245788
Q ss_pred HcCCC-----CCcEEEEEe-CCeEeeeee----CCCCHHHHHHHHHHH
Q 017071 122 EYNIL-----AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (378)
Q Consensus 122 ~~~v~-----~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (378)
+||+. ..|++++++ +|++...+. ..++.+++.+.|..+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 99985 489999999 897766552 346888887777543
No 155
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.65 E-value=2.9e-07 Score=70.64 Aligned_cols=94 Identities=11% Similarity=0.159 Sum_probs=68.3
Q ss_pred CcccCCCHHHHHHhhccCC-eEEEEEEcCCCCc--cH-----HHHHH-Hhcc--CCceeEEEE---ccHHHHhhcCCCCC
Q 017071 163 GTYSITTTDEAERILTVES-KLVLGFLHDLEGM--ES-----EELAA-ASKL--HSDVNFYQT---TSADVAEFFHIHPK 228 (378)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~~-~~~v~f~~~~~~~--~~-----~~~~~-~a~~--~~~~~f~~~---~~~~~~~~~~i~~~ 228 (378)
.+..+ +.+++++.+.+++ ++++.|++.||++ .. +.+.+ +++. .+++.|+.+ .+++++++|++.+
T Consensus 10 ~v~~l-t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~- 87 (120)
T cd03065 10 RVIDL-NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE- 87 (120)
T ss_pred ceeeC-ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc-
Confidence 34455 4578887777765 5555555667655 32 22334 4455 567888864 6889999999997
Q ss_pred CCCCeEEEeecCCCCccccCCCCCHHHHHHHHHh
Q 017071 229 SKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 229 ~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (378)
+||+++|+++. ...|.|.++.+.|.+||++
T Consensus 88 --iPTl~lfk~G~--~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 88 --EDSIYVFKDDE--VIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred --ccEEEEEECCE--EEEeeCCCCHHHHHHHHHH
Confidence 99999999874 4459999999999999985
No 156
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.65 E-value=1e-08 Score=77.91 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=50.3
Q ss_pred HHHhhhcCcchhhhhhHhhcCCCCCCCcEEEEEcC-CCcccc-CCCCCCHHHHHHHHHHHhcCc
Q 017071 288 LHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYV-LNGELTLSSIKSFGEEFLEDK 349 (378)
Q Consensus 288 ~f~~~d~~~~~~~~~l~~~~gi~~~~~p~i~i~~~-~~~~y~-~~~~~~~~~i~~Fi~~~~~Gk 349 (378)
.|+++|.+... ..++.||++.+..|+++|.+. .+.+|+ ++++++.++|.+|++++++|+
T Consensus 51 ~Fv~~d~~~~~---~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 51 NFLTADGDKFR---HPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEEechHhh---hHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 67777776544 267999999888999999998 557998 888999999999999999996
No 157
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.63 E-value=2.9e-07 Score=73.67 Aligned_cols=82 Identities=21% Similarity=0.366 Sum_probs=59.3
Q ss_pred EcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHH-H--HHHHHHhcCCcEEEEEeCcCcHHHHHHc--------CCCCC
Q 017071 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAKEY--------NILAY 128 (378)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~ 128 (378)
..+.+.++.+-.++|+++|.++++||+.|+.|..+ | .++++.++..+.-++||.++.+++.+.| |..|+
T Consensus 24 ~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGw 103 (163)
T PF03190_consen 24 PWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGW 103 (163)
T ss_dssp -SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---S
T ss_pred cCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCC
Confidence 34667788888899999999999999999999864 3 4567777778999999999999998888 88999
Q ss_pred cEEEEEe-CCeEee
Q 017071 129 PTLYLFV-AGVRQF 141 (378)
Q Consensus 129 Pt~~~~~-~g~~~~ 141 (378)
|+.+++. +|+...
T Consensus 104 Pl~vfltPdg~p~~ 117 (163)
T PF03190_consen 104 PLTVFLTPDGKPFF 117 (163)
T ss_dssp SEEEEE-TTS-EEE
T ss_pred CceEEECCCCCeee
Confidence 9999998 886554
No 158
>PRK13189 peroxiredoxin; Provisional
Probab=98.63 E-value=4.4e-07 Score=78.06 Aligned_cols=88 Identities=14% Similarity=0.203 Sum_probs=67.3
Q ss_pred CCCc-EEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC---------------------------cHHHHHH
Q 017071 72 KNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (378)
Q Consensus 72 ~~~~-~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~ 122 (378)
+++. +|+.||++||+.|..+.+.|.++++++++ ++.++.|.+|. +..++++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 5664 55678999999999999999999999876 67777777653 2456788
Q ss_pred cCCC-------CCcEEEEEe-CCeEeeeee----CCCCHHHHHHHHHHH
Q 017071 123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK 159 (378)
Q Consensus 123 ~~v~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~ 159 (378)
||+. ..|++++++ +|++..... +.++.+++.+.|..+
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8875 479999999 897655443 456778888777654
No 159
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.63 E-value=3.4e-07 Score=69.68 Aligned_cols=94 Identities=16% Similarity=0.231 Sum_probs=70.7
Q ss_pred cccCCCHHHHHHhhcc-CCeEEEEEEcCCCCcc---HHHHHHHh-ccCCceeEEEE---c--cHHHHhhcCCCCCCCCCe
Q 017071 164 TYSITTTDEAERILTV-ESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---T--SADVAEFFHIHPKSKRPA 233 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~-~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~--~~~~~~~~~i~~~~~~P~ 233 (378)
+.++ +.+++++.+.+ +.+++|.|+++||.+. .+.|.+++ .+.+.+.|+.+ . +.+++++|++.. +|+
T Consensus 2 v~~l-~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~---~Pt 77 (109)
T cd03002 2 VYEL-TPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG---FPT 77 (109)
T ss_pred eEEc-chhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc---CCE
Confidence 3445 34667776655 5569999999999864 34566666 45556666644 3 677999999987 999
Q ss_pred EEEeecCC----CCccccCCCCCHHHHHHHHH
Q 017071 234 LIFLHLEA----GKATPFRHQFTRLAIANFVT 261 (378)
Q Consensus 234 i~~~~~~~----~~~~~y~g~~~~~~l~~fi~ 261 (378)
+++|+++. .....|.|.++.++|.+||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99999875 35678999999999999983
No 160
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.60 E-value=6.8e-07 Score=76.44 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=67.9
Q ss_pred CCCcEEE-EEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC---------------------------cHHHHHH
Q 017071 72 KNRNVMV-MFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE 122 (378)
Q Consensus 72 ~~~~~lv-~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~ 122 (378)
++++++| .||++||+.|..+++.|.++++++++ ++.++.|++|. +..++++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 5666554 88999999999999999999999976 78888887753 2356778
Q ss_pred cCCC-------CCcEEEEEe-CCeEeeeeeC----CCCHHHHHHHHHHH
Q 017071 123 YNIL-------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK 159 (378)
Q Consensus 123 ~~v~-------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~ 159 (378)
||+. ..|++++++ +|++...+.+ .++.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8873 379999998 8877665432 36888888888654
No 161
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.59 E-value=5.5e-07 Score=67.68 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=71.4
Q ss_pred cCCCHHHHHHhhcc-CCeEEEEEEcCCCCcc---HHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEe
Q 017071 166 SITTTDEAERILTV-ESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (378)
Q Consensus 166 ~i~~~~~~~~~~~~-~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~ 237 (378)
++ +.+++++.+.. ..+++|.|+++||++. .+.|..++ .+.+.+.|+.. .+.+++++|++.+ +|++++|
T Consensus 4 ~l-~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~---~P~~~~~ 79 (103)
T cd03001 4 EL-TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRG---FPTIKVF 79 (103)
T ss_pred Ec-CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCc---cCEEEEE
Confidence 44 45677777655 4558999999999863 44566666 55667777754 5778999999986 9999999
Q ss_pred ecCCCCccccCCCCCHHHHHHHH
Q 017071 238 HLEAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~l~~fi 260 (378)
+.+......|.|.++.++|.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCCCCCHHHHHHHh
Confidence 98866788999999999999997
No 162
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.58 E-value=6.1e-07 Score=67.27 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=72.1
Q ss_pred CHHHHHHhhccCCeEEEEEEcCCCCccH---HHHHHHh-ccCC--ceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeec
Q 017071 169 TTDEAERILTVESKLVLGFLHDLEGMES---EELAAAS-KLHS--DVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (378)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~--~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~ 239 (378)
+.+.+++.+..+++++|.|+++||.... +.+..++ .+.+ ++.++.+ .+..++++|++.. +|++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~---~P~~~~~~~ 78 (102)
T TIGR01126 2 TASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG---FPTIKFFPK 78 (102)
T ss_pred chhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc---CCEEEEecC
Confidence 3467777887888999999999998743 4455555 3433 5667643 6778999999986 999999998
Q ss_pred CCCCccccCCCCCHHHHHHHHHhc
Q 017071 240 EAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 240 ~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
++. ...|.|.++.+.|..||.++
T Consensus 79 ~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 79 GKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCc-ceeecCCCCHHHHHHHHHhc
Confidence 864 88899999999999999875
No 163
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.58 E-value=7.5e-07 Score=62.84 Aligned_cols=73 Identities=16% Similarity=0.399 Sum_probs=57.0
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeC-CCCHHHHHHHH
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWV 156 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i 156 (378)
|.+++++|++|......++++++.++ +.+-.+|..+.+++ .+|||.++|++++ ||+ ..+.| ..+.+++.+||
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELL 75 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHh
Confidence 34468889999999999999999883 77777777666666 9999999999955 774 46888 78889999887
Q ss_pred H
Q 017071 157 R 157 (378)
Q Consensus 157 ~ 157 (378)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 4
No 164
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.56 E-value=8.9e-07 Score=75.15 Aligned_cols=87 Identities=17% Similarity=0.364 Sum_probs=66.9
Q ss_pred CCCcEEEEEec-CCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC----------------------------cHHHHH
Q 017071 72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK 121 (378)
Q Consensus 72 ~~~~~lv~F~a-~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 121 (378)
.+++++|.||+ .||++|..+.+.+.++++++.. ++.++.|+++. +.++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 57899999995 8899999999999999999987 78888887652 235778
Q ss_pred HcCCC------CCcEEEEEe-CCeEeeeeeC----CCCHHHHHHHHHH
Q 017071 122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVRE 158 (378)
Q Consensus 122 ~~~v~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~ 158 (378)
.||+. .+|+.++++ +|++...+.+ .++.+++.+.|..
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 89985 468999999 8876665544 3455666655543
No 165
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.51 E-value=7.7e-07 Score=78.05 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=76.0
Q ss_pred CCcEEcC-hhcHHHHhcC---CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEE
Q 017071 56 KDVVSLN-GKNFSEFMGK---NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (378)
Q Consensus 56 ~~v~~l~-~~~~~~~~~~---~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 131 (378)
..+..++ ++.|-..+.+ +..|+|.||-+.++.|..+...|..||.+|. .+.|++|....-+ +...|.+.+.||+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCEE
Confidence 5677885 5777777743 4569999999999999999999999999998 7999999977654 7889999999999
Q ss_pred EEEeCCeEeeeeeC-------CCCHHHHHHHHHHH
Q 017071 132 YLFVAGVRQFQFFG-------ERTRDVISAWVREK 159 (378)
Q Consensus 132 ~~~~~g~~~~~~~g-------~~~~~~l~~~i~~~ 159 (378)
++|++|..+..+.| ..+...|..||.++
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999988877765 24555666666654
No 166
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.50 E-value=1.9e-06 Score=65.89 Aligned_cols=91 Identities=8% Similarity=-0.017 Sum_probs=70.4
Q ss_pred HhcCCCcEEEEEecC----CChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC--cHHHHHHcCCCCCcEEEEEe----CCe
Q 017071 69 FMGKNRNVMVMFYAN----WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFV----AGV 138 (378)
Q Consensus 69 ~~~~~~~~lv~F~a~----wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~----~g~ 138 (378)
.-.+.|.++|++|++ ||..|+..... .++.+.++.++.+...|++. ..+++..+++.++|++.++. +.+
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~ 91 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMT 91 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceE
Confidence 336789999999999 89999766321 22333344578888888864 35799999999999999994 334
Q ss_pred EeeeeeCCCCHHHHHHHHHHHh
Q 017071 139 RQFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~~ 160 (378)
.+.+..|..+++++...+....
T Consensus 92 vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 92 IVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEeCCCCHHHHHHHHHHHH
Confidence 6789999999999999988765
No 167
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.47 E-value=2e-06 Score=74.63 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=71.3
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc-----------HHHHHHcCCCCCcEEEEEe-CCeE
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-----------KDLAKEYNILAYPTLYLFV-AGVR 139 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-----------~~~~~~~~v~~~Pt~~~~~-~g~~ 139 (378)
.++.-|+.||.+.|++|+++.|.+..++++|+ +.+..|++|.. ...++++||..+|++++++ +++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQK 226 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCc
Confidence 35688999999999999999999999999984 66666666643 5689999999999999998 4333
Q ss_pred -eeeeeCCCCHHHHHHHHHHHh
Q 017071 140 -QFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 140 -~~~~~g~~~~~~l~~~i~~~~ 160 (378)
.-.-.|..+.++|.+-|...+
T Consensus 227 ~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 227 MSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEEeeccCCHHHHHHHHHHHH
Confidence 334569999999998887655
No 168
>PHA02278 thioredoxin-like protein
Probab=98.47 E-value=1.4e-06 Score=65.23 Aligned_cols=88 Identities=10% Similarity=0.134 Sum_probs=67.0
Q ss_pred CCHHHHHHhhccCCeEEEEEEcCCCCcc---HHHHHHHhc-cCCceeEEEE--c-----cHHHHhhcCCCCCCCCCeEEE
Q 017071 168 TTTDEAERILTVESKLVLGFLHDLEGME---SEELAAASK-LHSDVNFYQT--T-----SADVAEFFHIHPKSKRPALIF 236 (378)
Q Consensus 168 ~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a~-~~~~~~f~~~--~-----~~~~~~~~~i~~~~~~P~i~~ 236 (378)
.+.+++.+.++.+++++|.|+++||++. .+.+.+++. ...+..|..+ . .++++++|++.+ .||+++
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~---iPT~i~ 78 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMS---TPVLIG 78 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCcc---ccEEEE
Confidence 4678888888889999999999999984 456777663 3344555533 2 157999999997 999999
Q ss_pred eecCCCCccccCCCCCHHHHHHH
Q 017071 237 LHLEAGKATPFRHQFTRLAIANF 259 (378)
Q Consensus 237 ~~~~~~~~~~y~g~~~~~~l~~f 259 (378)
|+++. ......|..+.+.|.+|
T Consensus 79 fk~G~-~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQ-LVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EECCE-EEEEEeCCCCHHHHHhh
Confidence 99873 55567788788888776
No 169
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.47 E-value=5.7e-06 Score=61.94 Aligned_cols=104 Identities=23% Similarity=0.349 Sum_probs=79.9
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHH-HHhcC--CcEEEEEeCc-----CcHHHHHHcCC--
Q 017071 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAA-KMLKG--EADLVMVDAY-----LEKDLAKEYNI-- 125 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~-~~~~~--~~~~~~vd~~-----~~~~~~~~~~v-- 125 (378)
...+.|+.-+|++.+.+.+.+||.|-... |--+-+..|.++| +.... ++-++.|.+. +|.+++++|++
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 35678999999999999999999996543 4456677888888 44333 8999999875 46899999999
Q ss_pred CCCcEEEEEe-CCeEeeee--eCCCCHHHHHHHHHHHhc
Q 017071 126 LAYPTLYLFV-AGVRQFQF--FGERTRDVISAWVREKMT 161 (378)
Q Consensus 126 ~~~Pt~~~~~-~g~~~~~~--~g~~~~~~l~~~i~~~~~ 161 (378)
..+|.+++|. +.....+| .|..+.+.|.+|+.+..+
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 5689999999 44667788 899999999999998754
No 170
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.46 E-value=2e-06 Score=64.42 Aligned_cols=91 Identities=10% Similarity=0.122 Sum_probs=68.3
Q ss_pred cccCCCHHHHHHhhccCCeEEEEEEcCCCCcc---HHHHHHHhc-cC-CceeEEEE---ccHHHHhhcCCCCCCCCCeEE
Q 017071 164 TYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAASK-LH-SDVNFYQT---TSADVAEFFHIHPKSKRPALI 235 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a~-~~-~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~ 235 (378)
+.++ +.+++++.++.. ++|.|+++||++. .+.|.+++. .. .++.|+.+ .++.++++|++.. +|+++
T Consensus 3 v~~l-~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~---~Pt~~ 76 (101)
T cd02994 3 VVEL-TDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTA---LPTIY 76 (101)
T ss_pred eEEc-ChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcc---cCEEE
Confidence 4556 467788777543 7899999999873 456666663 22 24666654 5778999999987 99999
Q ss_pred EeecCCCCccccCCCCCHHHHHHHHHh
Q 017071 236 FLHLEAGKATPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 236 ~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (378)
+++.+ ....|.|..+.++|.+||++
T Consensus 77 ~~~~g--~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAKDG--VFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EeCCC--CEEEecCCCCHHHHHHHHhC
Confidence 99776 35789999999999999864
No 171
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.45 E-value=1.7e-06 Score=65.78 Aligned_cols=93 Identities=11% Similarity=0.173 Sum_probs=68.2
Q ss_pred cccCCCHHHHHHhhc---cCCeEEEEEEcCCCCcc---HHHHHHHh-ccCC-ceeEEEE---c-cHHHHh-hcCCCCCCC
Q 017071 164 TYSITTTDEAERILT---VESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQT---T-SADVAE-FFHIHPKSK 230 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~---~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~---~-~~~~~~-~~~i~~~~~ 230 (378)
+.++ +.++++.+.. ++++++|.|+++||.+. .+.+.+++ .+.+ ++.++.+ . +..++. .+++..
T Consensus 3 v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~--- 78 (109)
T cd02993 3 VVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS--- 78 (109)
T ss_pred ceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCc---
Confidence 3445 4467777763 46799999999999873 35566666 4444 3667654 2 355665 589986
Q ss_pred CCeEEEeecCCCCccccCCC-CCHHHHHHHH
Q 017071 231 RPALIFLHLEAGKATPFRHQ-FTRLAIANFV 260 (378)
Q Consensus 231 ~P~i~~~~~~~~~~~~y~g~-~~~~~l~~fi 260 (378)
+|++++|+.+......|+|. ++.++|.+||
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 99999999877778899995 8999999986
No 172
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.44 E-value=2.1e-06 Score=63.86 Aligned_cols=89 Identities=12% Similarity=0.233 Sum_probs=71.5
Q ss_pred CHHHHHHhhccCCeEEEEEEcCCCCc---cHHHHHHHh-cc--CCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeec
Q 017071 169 TTDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KL--HSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (378)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~--~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~ 239 (378)
+.+++.+.+.+.+.++|.|+++||++ ..+.+..++ .+ ...+.|+.+ .+..++++|++.. +|++++|++
T Consensus 4 ~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~---~Pt~~~~~~ 80 (101)
T cd02961 4 TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG---YPTIKLFPN 80 (101)
T ss_pred cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC---CCEEEEEcC
Confidence 45688888888889999999999986 344566665 44 467888765 4578999999986 999999998
Q ss_pred CCCCccccCCCCCHHHHHHHH
Q 017071 240 EAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 240 ~~~~~~~y~g~~~~~~l~~fi 260 (378)
+......|.|..+.++|.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 756888899999999998885
No 173
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.43 E-value=4.5e-06 Score=63.79 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=71.8
Q ss_pred CCcccCCCHHHHHHhhccCCeEEEEEEcCCCCcc---HHHHHHHhccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEE
Q 017071 162 LGTYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI 235 (378)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~ 235 (378)
..+..|++.+++.+.++++..++|.|+++||++. .+.+.++++...++.|+.+ ..++++++|++.. .|+++
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~---vPt~l 80 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKV---LPTVI 80 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCcc---CCEEE
Confidence 3567788889999999888999999999999873 4566677744456777754 5677999999997 99999
Q ss_pred EeecCCCC-------ccccCCCCCHHHHHHHH
Q 017071 236 FLHLEAGK-------ATPFRHQFTRLAIANFV 260 (378)
Q Consensus 236 ~~~~~~~~-------~~~y~g~~~~~~l~~fi 260 (378)
+|+.+... .....++++.+++..|+
T Consensus 81 ~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 81 LFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99987421 11111456778888886
No 174
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.41 E-value=7.5e-07 Score=64.24 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=45.5
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH-----HHHHHcCCCCCcEEEEEeCCeE
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGVR 139 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~ 139 (378)
++.|+++||++|+...+.+.++. ....+.+..||.+++. .+.+.+|+.++|+++ -+|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEE
Confidence 47899999999999999999976 3334778888876554 266778999999984 46743
No 175
>PRK10996 thioredoxin 2; Provisional
Probab=98.40 E-value=3.1e-06 Score=67.30 Aligned_cols=91 Identities=11% Similarity=0.245 Sum_probs=72.5
Q ss_pred CHHHHHHhhccCCeEEEEEEcCCCCcc---HHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecCC
Q 017071 169 TTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA 241 (378)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~~ 241 (378)
+.+++++.++.++.++|.|+++||++. .+.|..++ .+.+++.|+.+ .+++++++|++.+ +|++++|+.+
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~---~Ptlii~~~G- 116 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRS---IPTIMIFKNG- 116 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCc---cCEEEEEECC-
Confidence 567888888888999999999999973 34566666 45566777654 5678999999986 9999999865
Q ss_pred CCccccCCCCCHHHHHHHHHhc
Q 017071 242 GKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 242 ~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
.....+.|..+.+.|.+|+++.
T Consensus 117 ~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 117 QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEEEcCCCCHHHHHHHHHHh
Confidence 3556778999999999999864
No 176
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.38 E-value=5e-06 Score=71.79 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=69.5
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC-----------cHHHHHHcCCCCCcEEEEEe-C-CeE
Q 017071 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFV-A-GVR 139 (378)
Q Consensus 73 ~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-----------~~~~~~~~~v~~~Pt~~~~~-~-g~~ 139 (378)
++.-|+.||.+.|++|.++.|.+..++++++ +.+..|++|. +...++++||..+|++++++ + ++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 5678999999999999999999999999985 5665555542 34577899999999999998 4 344
Q ss_pred eeeeeCCCCHHHHHHHHHHHh
Q 017071 140 QFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 140 ~~~~~g~~~~~~l~~~i~~~~ 160 (378)
.-.-.|..+.++|.+-|....
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHH
Confidence 445569999999998887654
No 177
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.37 E-value=1.5e-06 Score=64.89 Aligned_cols=77 Identities=10% Similarity=0.125 Sum_probs=61.1
Q ss_pred cCCeEEEEEEcCCCCc---cHHHHHHHhccCCceeEEEE----ccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCC
Q 017071 179 VESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT----TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF 251 (378)
Q Consensus 179 ~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~----~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~ 251 (378)
.+++++|.|+++||++ ..+.|.++++...++.|..+ .+++++++|++.. +||+++|+.+ ....|.|.+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~---~PT~~lf~~g--~~~~~~G~~ 91 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVG---FPTILLFNST--PRVRYNGTR 91 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCee---cCEEEEEcCC--ceeEecCCC
Confidence 4678999999999987 34567777744344555543 3577999999987 9999999976 678899999
Q ss_pred CHHHHHHHH
Q 017071 252 TRLAIANFV 260 (378)
Q Consensus 252 ~~~~l~~fi 260 (378)
+.+.|.+||
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999999986
No 178
>PRK09381 trxA thioredoxin; Provisional
Probab=98.37 E-value=4.3e-06 Score=63.56 Aligned_cols=97 Identities=12% Similarity=0.206 Sum_probs=72.0
Q ss_pred CCcccCCCHHHHH-HhhccCCeEEEEEEcCCCCcc---HHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCe
Q 017071 162 LGTYSITTTDEAE-RILTVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPA 233 (378)
Q Consensus 162 ~~~~~i~~~~~~~-~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~ 233 (378)
..+.+++. ++++ ..++.+.+++|.|+.+||.+. .+.+.+++ .+.+++.|+.+ ....++++|++.. +|+
T Consensus 3 ~~v~~~~~-~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~---~Pt 78 (109)
T PRK09381 3 DKIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG---IPT 78 (109)
T ss_pred CcceeeCh-hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCc---CCE
Confidence 34666644 4555 456668899999999999864 45566666 55566766644 5678899999986 999
Q ss_pred EEEeecCCCCccccCCCCCHHHHHHHHHhc
Q 017071 234 LIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 234 i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
+++|+.+. ....+.|..+.+.|..||..+
T Consensus 79 ~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 79 LLLFKNGE-VAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred EEEEeCCe-EEEEecCCCCHHHHHHHHHHh
Confidence 99998653 455678888999999999865
No 179
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.37 E-value=1.1e-06 Score=70.85 Aligned_cols=87 Identities=25% Similarity=0.265 Sum_probs=77.7
Q ss_pred EEcC-hhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCC
Q 017071 59 VSLN-GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG 137 (378)
Q Consensus 59 ~~l~-~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g 137 (378)
..+. ..+|-....+..-|++.||-+.-..|+-+...++.+|+.+- ...|++||....|-++.+++|..+|++.+|++|
T Consensus 69 ~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g 147 (211)
T KOG1672|consen 69 EEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNG 147 (211)
T ss_pred EEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEEcC
Confidence 3443 66777777778889999999999999999999999999876 699999999999999999999999999999999
Q ss_pred eEeeeeeCC
Q 017071 138 VRQFQFFGE 146 (378)
Q Consensus 138 ~~~~~~~g~ 146 (378)
+....+.|.
T Consensus 148 ~~~D~iVGF 156 (211)
T KOG1672|consen 148 KTVDYVVGF 156 (211)
T ss_pred EEEEEEeeH
Confidence 888888875
No 180
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.36 E-value=3.6e-06 Score=72.50 Aligned_cols=93 Identities=14% Similarity=0.162 Sum_probs=74.4
Q ss_pred ccCCeEEEEEEcCCCCcc---HHHHHHHh-cc---CCceeEE---EEccHHHHhhcCCCCCCCCCeEEEeecCCCCcccc
Q 017071 178 TVESKLVLGFLHDLEGME---SEELAAAS-KL---HSDVNFY---QTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPF 247 (378)
Q Consensus 178 ~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~---~~~~~f~---~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y 247 (378)
++++.|+|.||++||.+. .+.+.++. .+ ...++.+ ++..+.++.+||+.+ +|+|.+|+.+ ..+.|
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqG---YPTIk~~kgd--~a~dY 115 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQG---YPTIKFFKGD--HAIDY 115 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCC---CceEEEecCC--eeeec
Confidence 346799999999999863 34455554 22 2234443 678899999999997 9999999976 88999
Q ss_pred CCCCCHHHHHHHHHhcCCCceEEecccc
Q 017071 248 RHQFTRLAIANFVTHTKHPLVVTLTIHN 275 (378)
Q Consensus 248 ~g~~~~~~l~~fi~~~~~P~~~~l~~~~ 275 (378)
.|.++.++|.+|.....-|++..+++..
T Consensus 116 RG~R~Kd~iieFAhR~a~aiI~pi~enQ 143 (468)
T KOG4277|consen 116 RGGREKDAIIEFAHRCAAAIIEPINENQ 143 (468)
T ss_pred CCCccHHHHHHHHHhcccceeeecChhH
Confidence 9999999999999999999999888743
No 181
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.35 E-value=3.1e-06 Score=63.70 Aligned_cols=88 Identities=14% Similarity=0.229 Sum_probs=67.9
Q ss_pred HHHHHHhhccCC-eEEEEEEcCCCCccH---HHHHHHh-ccC--CceeEEEE---c-cHHHHhhcCCCCCCCCCeEEEee
Q 017071 170 TDEAERILTVES-KLVLGFLHDLEGMES---EELAAAS-KLH--SDVNFYQT---T-SADVAEFFHIHPKSKRPALIFLH 238 (378)
Q Consensus 170 ~~~~~~~~~~~~-~~~v~f~~~~~~~~~---~~~~~~a-~~~--~~~~f~~~---~-~~~~~~~~~i~~~~~~P~i~~~~ 238 (378)
.+++++.+.+.+ ++++.|+++||.+.. +.+..++ .+. +++.|+.. . +.++++++++.. +|++++|+
T Consensus 7 ~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~---~P~~~~~~ 83 (105)
T cd02998 7 DSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSG---FPTLKFFP 83 (105)
T ss_pred hhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCC---cCEEEEEe
Confidence 356666666544 889999999998643 5566666 333 45666654 4 678999999986 99999999
Q ss_pred cCCCCccccCCCCCHHHHHHHH
Q 017071 239 LEAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 239 ~~~~~~~~y~g~~~~~~l~~fi 260 (378)
.+......|.|.++.++|.+||
T Consensus 84 ~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 84 KGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCCCCccccCCccCHHHHHhhC
Confidence 8866788899999999999986
No 182
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.34 E-value=3.3e-06 Score=63.46 Aligned_cols=93 Identities=12% Similarity=0.224 Sum_probs=67.8
Q ss_pred cccCCCHHHHHHhhcc-CCeEEEEEEcCCCCc---cHHHHHHHhc-cCC--ceeEEEEc--cHHHHhhcCCCCCCCCCeE
Q 017071 164 TYSITTTDEAERILTV-ESKLVLGFLHDLEGM---ESEELAAASK-LHS--DVNFYQTT--SADVAEFFHIHPKSKRPAL 234 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~-~~~~~v~f~~~~~~~---~~~~~~~~a~-~~~--~~~f~~~~--~~~~~~~~~i~~~~~~P~i 234 (378)
+..+ +.+++++.+.. +..++|.|+++||++ ..+.+.++++ +.. ++.|+... ..+++..+++.. +|++
T Consensus 2 v~~l-~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~---~Pt~ 77 (104)
T cd02995 2 VKVV-VGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDG---FPTI 77 (104)
T ss_pred eEEE-chhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCC---CCEE
Confidence 4455 34677776654 578899999999986 3456666663 333 57777552 336788888865 9999
Q ss_pred EEeecCC-CCccccCCCCCHHHHHHHH
Q 017071 235 IFLHLEA-GKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 235 ~~~~~~~-~~~~~y~g~~~~~~l~~fi 260 (378)
++|+.+. .....|.|..+.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 78 LFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 9999875 4577899999999999986
No 183
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.33 E-value=6.8e-06 Score=61.65 Aligned_cols=92 Identities=14% Similarity=0.179 Sum_probs=69.0
Q ss_pred cCCCHHHHHHhhccCCeEEEEEEcCCCCcc---HHHHHHHh-ccCC-ceeEEEE--ccHHHHhhcCCCCCCCCCeEEEee
Q 017071 166 SITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQT--TSADVAEFFHIHPKSKRPALIFLH 238 (378)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~--~~~~~~~~~~i~~~~~~P~i~~~~ 238 (378)
.+.+.++++.+++++++++|.|+++||++. .+.+..++ .+.+ .+.|..+ .+.+++++|++.. .|++++|+
T Consensus 3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~---~Pt~~~~~ 79 (102)
T cd02948 3 EINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKC---EPTFLFYK 79 (102)
T ss_pred EccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCc---CcEEEEEE
Confidence 467899999999889999999999999974 34566655 4443 3566653 3678999999997 89999998
Q ss_pred cCCCCccccCCCCCHHHHHHHHHh
Q 017071 239 LEAGKATPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 239 ~~~~~~~~y~g~~~~~~l~~fi~~ 262 (378)
++. ......| .+.+.+.+||..
T Consensus 80 ~g~-~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 80 NGE-LVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred CCE-EEEEEec-CChHHHHHHHhh
Confidence 763 3334455 377889988864
No 184
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.33 E-value=5.3e-06 Score=59.95 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=57.2
Q ss_pred EEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH----HHHHHcC--CCCCcEEEEEeCCeEeeeeeCCCCH
Q 017071 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYN--ILAYPTLYLFVAGVRQFQFFGERTR 149 (378)
Q Consensus 76 ~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~g~~~~ 149 (378)
-++.|+.+||++|++....++++..++. ++.+..+|.++++ ++.+..+ +..+|+++ .+|+.+. ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig------g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG------GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc------CH
Confidence 3678999999999999999999988763 7888889888753 4555454 58899976 4775432 34
Q ss_pred HHHHHHHHHHh
Q 017071 150 DVISAWVREKM 160 (378)
Q Consensus 150 ~~l~~~i~~~~ 160 (378)
+++.++++..+
T Consensus 73 ~~~~~~~~~~~ 83 (85)
T PRK11200 73 TDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHhc
Confidence 77777777655
No 185
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.32 E-value=2.1e-06 Score=66.90 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=51.7
Q ss_pred cChhcHHHHh-cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHc---CCCCCcEEEEEe-
Q 017071 61 LNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFV- 135 (378)
Q Consensus 61 l~~~~~~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~- 135 (378)
++.+....+. ...+..++-|..+|||.|+...|.+.++++..+ ++.+--+..|++.++..+| |...+|++++++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 4444444333 234567888999999999999999999999865 5666666667777776655 678899999998
Q ss_pred CCeEeeeeeC
Q 017071 136 AGVRQFQFFG 145 (378)
Q Consensus 136 ~g~~~~~~~g 145 (378)
+|+++.++..
T Consensus 107 ~~~~lg~wge 116 (129)
T PF14595_consen 107 DGKELGRWGE 116 (129)
T ss_dssp T--EEEEEES
T ss_pred CCCEeEEEcC
Confidence 6766666643
No 186
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.32 E-value=4.4e-06 Score=61.86 Aligned_cols=78 Identities=9% Similarity=0.161 Sum_probs=60.5
Q ss_pred CCeEEEEEEcCCCCcc---HHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCC
Q 017071 180 ESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFT 252 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~ 252 (378)
+.+++|.|+++||.+. .+.+.+++ .+.+.+.|+.+ .+++++++|++.. +|++++|+.+ .....+.|..+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~---~Pt~~~~~~g-~~~~~~~g~~~ 87 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQA---LPTVYLFAAG-QPVDGFQGAQP 87 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCC---CCEEEEEeCC-EEeeeecCCCC
Confidence 5689999999999874 44566666 44455666543 6789999999986 9999999855 34557899999
Q ss_pred HHHHHHHHH
Q 017071 253 RLAIANFVT 261 (378)
Q Consensus 253 ~~~l~~fi~ 261 (378)
.++|..||+
T Consensus 88 ~~~l~~~l~ 96 (96)
T cd02956 88 EEQLRQMLD 96 (96)
T ss_pred HHHHHHHhC
Confidence 999999974
No 187
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.32 E-value=3.5e-06 Score=63.12 Aligned_cols=89 Identities=13% Similarity=0.250 Sum_probs=67.0
Q ss_pred cCCCHHHHHHhhccCCeEEEEEEcCCCCcc---HHHHHHHh-ccCC---ceeEEEE---ccHHHHhhcCCCCCCCCCeEE
Q 017071 166 SITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLHS---DVNFYQT---TSADVAEFFHIHPKSKRPALI 235 (378)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~---~~~f~~~---~~~~~~~~~~i~~~~~~P~i~ 235 (378)
.+ +.+++++.+.+. .++|.|+++||.+. .+.+.+++ .+.+ ++.|+.+ .+.+++++|++.. +|+++
T Consensus 4 ~l-~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~---~Pt~~ 78 (102)
T cd03005 4 EL-TEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRG---YPTLL 78 (102)
T ss_pred EC-CHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCc---CCEEE
Confidence 44 456788887665 48899999999863 34566665 4433 5666654 5678999999986 99999
Q ss_pred EeecCCCCccccCCCCCHHHHHHHH
Q 017071 236 FLHLEAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 236 ~~~~~~~~~~~y~g~~~~~~l~~fi 260 (378)
+|+++. ....|.|.++.++|.+||
T Consensus 79 ~~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 79 LFKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEeCCC-eeeEeeCCCCHHHHHhhC
Confidence 998764 566899999999999885
No 188
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.31 E-value=4.3e-06 Score=62.96 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=66.5
Q ss_pred HHHHHhhccCCeEEEEEEcCCCCccHHHH------HHHh-ccCCceeEEEEc-------cHHHHhhcCCCCCCCCCeEEE
Q 017071 171 DEAERILTVESKLVLGFLHDLEGMESEEL------AAAS-KLHSDVNFYQTT-------SADVAEFFHIHPKSKRPALIF 236 (378)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~~------~~~a-~~~~~~~f~~~~-------~~~~~~~~~i~~~~~~P~i~~ 236 (378)
+.+++.++.+++++|.|+++||.+..... ..++ .+.+++.+..+. ..+++++|++.. +|++++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~---~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFG---PPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCC---CCEEEE
Confidence 46677788899999999999999854432 2334 334466666442 467889999987 999999
Q ss_pred eec-CCCCccccCCCCCHHHHHHHHH
Q 017071 237 LHL-EAGKATPFRHQFTRLAIANFVT 261 (378)
Q Consensus 237 ~~~-~~~~~~~y~g~~~~~~l~~fi~ 261 (378)
|++ ++.....+.|.++.++|.+||+
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 997 4557788899999999998874
No 189
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.31 E-value=8.3e-07 Score=69.45 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=52.4
Q ss_pred HHHHhhhcCcchhhhhhHhhcCCCCCCCcEEEEEcCCCcccc-CCCCCCHHHHHHHHHHHhcCce
Q 017071 287 LLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYV-LNGELTLSSIKSFGEEFLEDKL 350 (378)
Q Consensus 287 l~f~~~d~~~~~~~~~l~~~~gi~~~~~p~i~i~~~~~~~y~-~~~~~~~~~i~~Fi~~~~~Gkl 350 (378)
+.|+|+|.+... .+.+.||++....|++++.+.++.+|. +++++|.++|.+|++++++|++
T Consensus 58 i~Fv~vd~~~~~---~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 58 WGWLWTEAGAQL---DLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred EEEEEEeCcccH---HHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 368888887654 377999998878999999999433888 8899999999999999999999
No 190
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.30 E-value=4.6e-06 Score=72.04 Aligned_cols=101 Identities=17% Similarity=0.252 Sum_probs=79.3
Q ss_pred HHHHHHhhccCCeEEEEEEcCCCCc---cHHHHHHHh-ccC-----CceeEEEE---ccHHHHhhcCCCCCCCCCeEEEe
Q 017071 170 TDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLH-----SDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (378)
Q Consensus 170 ~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~-----~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~ 237 (378)
.++++..+.++..++|.||++||.- ..+.|.++| .+. +++.++.+ ....++++|.|+. +||+.+|
T Consensus 3 ~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~K---yPTlKvf 79 (375)
T KOG0912|consen 3 SENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINK---YPTLKVF 79 (375)
T ss_pred cccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcccc---Cceeeee
Confidence 4567788889999999999999964 456677666 322 44556644 6778999999985 9999999
Q ss_pred ecCCCCccccCCCCCHHHHHHHHHhcCCCceEEecc
Q 017071 238 HLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTI 273 (378)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~l~~fi~~~~~P~~~~l~~ 273 (378)
+.+.--.-.|.|.++.+.|.+||++..--.+.|+.+
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~s 115 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFES 115 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhccHHHHHHh
Confidence 998655568999999999999999876655666554
No 191
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.27 E-value=1.3e-05 Score=60.88 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=82.4
Q ss_pred EEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHH---hcCCcEEEEEeCcCcHHHHHHcCCCC--CcEEEE
Q 017071 59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM---LKGEADLVMVDAYLEKDLAKEYNILA--YPTLYL 133 (378)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~---~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt~~~ 133 (378)
.++|.++.......+.+..+.|+ .-..-....+.+.++|++ +++++.|+.+|.++.....+.||+.+ +|.+.+
T Consensus 2 ~e~t~e~~~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 2 REITFENAEELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAI 79 (111)
T ss_pred cccccccHHHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence 46788888888888888777777 223346788999999999 99999999999999988999999997 999999
Q ss_pred Ee-CCeEeee-eeCCCCHHHHHHHHHHHhc
Q 017071 134 FV-AGVRQFQ-FFGERTRDVISAWVREKMT 161 (378)
Q Consensus 134 ~~-~g~~~~~-~~g~~~~~~l~~~i~~~~~ 161 (378)
.. ++...+. +.+..+.+.|.+|+++.+.
T Consensus 80 ~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 80 DSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 98 3322333 5688999999999998874
No 192
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.24 E-value=9.9e-06 Score=69.35 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=72.8
Q ss_pred CcccCCCHHHHHHhhcc-----CCeEEEEEEcCCCCcc---HHHHHHHh-ccCCceeEEE---EccHHHHhhcCCCCCCC
Q 017071 163 GTYSITTTDEAERILTV-----ESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQ---TTSADVAEFFHIHPKSK 230 (378)
Q Consensus 163 ~~~~i~~~~~~~~~~~~-----~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~---~~~~~~~~~~~i~~~~~ 230 (378)
.+..+ +.+++++.+.. ..+++|.|+++||.+. .+.|.+++ .+.+.+.|+. ..+++++++|++..
T Consensus 31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~--- 106 (224)
T PTZ00443 31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKG--- 106 (224)
T ss_pred CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCc---
Confidence 35555 56788877643 4689999999999974 45577766 5566677764 46788999999987
Q ss_pred CCeEEEeecCCCCcccc-CCCCCHHHHHHHHHhcC
Q 017071 231 RPALIFLHLEAGKATPF-RHQFTRLAIANFVTHTK 264 (378)
Q Consensus 231 ~P~i~~~~~~~~~~~~y-~g~~~~~~l~~fi~~~~ 264 (378)
+|++++|+.+ +...| .|..+.++|.+|+..+.
T Consensus 107 ~PTl~~f~~G--~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 107 YPTLLLFDKG--KMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred CCEEEEEECC--EEEEeeCCCCCHHHHHHHHHHHH
Confidence 9999999965 44444 57789999999998753
No 193
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.24 E-value=1.3e-05 Score=59.82 Aligned_cols=91 Identities=13% Similarity=0.248 Sum_probs=68.7
Q ss_pred CHHHHHHhhccC-CeEEEEEEcCCCCcc---HHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecC
Q 017071 169 TTDEAERILTVE-SKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (378)
Q Consensus 169 ~~~~~~~~~~~~-~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~ 240 (378)
+.+++.+.+..+ ..++|.|+.+||... .+.+..++ .+.+++.|+.+ .+++++++|++.. +|++++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~---~P~~~~~~~g 78 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRS---IPTLLLFKNG 78 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCc---CCEEEEEeCC
Confidence 346677777664 488999999999863 34566666 55556777755 5678999999987 9999999765
Q ss_pred CCCccccCCCCCHHHHHHHHHhc
Q 017071 241 AGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 241 ~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
. ....+.|..+.+.+.+||+++
T Consensus 79 ~-~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 K-EVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred c-EeeeecCCCCHHHHHHHHHhh
Confidence 3 456777888889999999864
No 194
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.22 E-value=1e-05 Score=61.68 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=65.9
Q ss_pred CHHHHHH-hhc--cCCeEEEEEEcCCCCcc---HHHHHHHh-ccCC-ceeEEEE---ccHHHHhhcCCCCCCCCCeEEEe
Q 017071 169 TTDEAER-ILT--VESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (378)
Q Consensus 169 ~~~~~~~-~~~--~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~ 237 (378)
+.+++++ .+. .+++++|.|+++||.+. .+.+.+++ .+.+ ++.|+.+ .+..+++++++.. +|++++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~---~Pt~~i~ 86 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHS---VPAIVGI 86 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCcc---CCEEEEE
Confidence 3444543 332 46899999999999874 45566666 4433 4666654 5678999999986 9999999
Q ss_pred ecCCCCccccCCCCCHHHHHHHHHh
Q 017071 238 HLEAGKATPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (378)
+.+ .....+.|..+.+.|.+||++
T Consensus 87 ~~g-~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 ING-QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECC-EEEEEecCCCCHHHHHHHHhc
Confidence 865 345566898999999999975
No 195
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.22 E-value=8.2e-06 Score=61.31 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=67.6
Q ss_pred ccCCCHHHHHHhhccCCeEEEEEEcCCCCccH---HHHHHHh-ccC--CceeEEE---Ec--cHHHHhhcCCCCCCCCCe
Q 017071 165 YSITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAAS-KLH--SDVNFYQ---TT--SADVAEFFHIHPKSKRPA 233 (378)
Q Consensus 165 ~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~--~~~~f~~---~~--~~~~~~~~~i~~~~~~P~ 233 (378)
..+ +..++++.++.++.++|.|+++||.+.. +.+..++ .+. +.+.|+. .. +.++++++++.. +|+
T Consensus 3 ~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~---~Pt 78 (104)
T cd02997 3 VHL-TDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG---FPT 78 (104)
T ss_pred EEe-chHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc---ccE
Confidence 344 3567888888888999999999998633 3444444 333 4455553 24 778999999986 999
Q ss_pred EEEeecCCCCccccCCCCCHHHHHHHH
Q 017071 234 LIFLHLEAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 234 i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (378)
+++|+.+. ....|.|..+.+.+.+||
T Consensus 79 ~~~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 99999764 567899999999999885
No 196
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.21 E-value=1.4e-05 Score=75.57 Aligned_cols=97 Identities=10% Similarity=0.159 Sum_probs=73.0
Q ss_pred CCcccCCCHHHHHHhhc---cCCeEEEEEEcCCCCcc---HHHHHHHh-ccCCc-eeEEEE---cc-HHH-HhhcCCCCC
Q 017071 162 LGTYSITTTDEAERILT---VESKLVLGFLHDLEGME---SEELAAAS-KLHSD-VNFYQT---TS-ADV-AEFFHIHPK 228 (378)
Q Consensus 162 ~~~~~i~~~~~~~~~~~---~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~-~~f~~~---~~-~~~-~~~~~i~~~ 228 (378)
..+..+ +.+++++.++ .+++++|.||++||.+. .+.|.++| ++.+. +.|+.+ .+ ..+ +++|+|..
T Consensus 351 ~~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~- 428 (463)
T TIGR00424 351 NNVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS- 428 (463)
T ss_pred CCeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc-
Confidence 345555 5568888875 57889999999999874 45677777 45443 667654 22 234 46899986
Q ss_pred CCCCeEEEeecCCCCccccC-CCCCHHHHHHHHHh
Q 017071 229 SKRPALIFLHLEAGKATPFR-HQFTRLAIANFVTH 262 (378)
Q Consensus 229 ~~~P~i~~~~~~~~~~~~y~-g~~~~~~l~~fi~~ 262 (378)
+|++++|+.+...+..|. |.++.+.|..||+.
T Consensus 429 --~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 --FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred --cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999999876788897 58999999999974
No 197
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.19 E-value=8.4e-06 Score=61.64 Aligned_cols=69 Identities=16% Similarity=0.270 Sum_probs=54.5
Q ss_pred HHHHHHhhc--cCCeEEEEEEcCCCCcc---HHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecC
Q 017071 170 TDEAERILT--VESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (378)
Q Consensus 170 ~~~~~~~~~--~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~ 240 (378)
.+++++.+. .+++++|.|+++||++. .+.+.+++ ++.+.+.|+.+ .+++++++|++.. .||+++|+++
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~---iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYD---PPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCC---CCEEEEEECC
Confidence 456667775 46789999999999984 46677877 55556677754 6789999999997 9999999987
Q ss_pred C
Q 017071 241 A 241 (378)
Q Consensus 241 ~ 241 (378)
.
T Consensus 79 ~ 79 (114)
T cd02954 79 K 79 (114)
T ss_pred E
Confidence 4
No 198
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.18 E-value=2.3e-05 Score=58.13 Aligned_cols=88 Identities=18% Similarity=0.335 Sum_probs=72.4
Q ss_pred hcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCC-eEeee
Q 017071 64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQ 142 (378)
Q Consensus 64 ~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~ 142 (378)
+.++..+..+++++|-|+.++|+ .....|.++|+.+++.+.|+.+. +.++++++++.. |++.+|+.+ .....
T Consensus 8 ~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~~~~ 80 (97)
T cd02981 8 EELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEEPVE 80 (97)
T ss_pred HHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccCCcc
Confidence 34556677889999999999987 57888999999998789998877 567888888765 999999853 45677
Q ss_pred eeCCCCHHHHHHHHHH
Q 017071 143 FFGERTRDVISAWVRE 158 (378)
Q Consensus 143 ~~g~~~~~~l~~~i~~ 158 (378)
|.|..+.+.|.+||..
T Consensus 81 y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 81 YDGEFTEESLVEFIKD 96 (97)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999999864
No 199
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.16 E-value=1.7e-05 Score=55.14 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=47.5
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHc----CCCCCcEEEEEeCCeEeeeeeCCCCHHHH
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY----NILAYPTLYLFVAGVRQFQFFGERTRDVI 152 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (378)
++.|+++||++|+...+.+.+. ++.+..+|++.+....+.+ ++.++|++++ +|+ ...| .+...|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSG-FRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEec-CCHHHH
Confidence 5779999999999988877652 5677788888776555444 6889999865 452 3334 455666
Q ss_pred HHH
Q 017071 153 SAW 155 (378)
Q Consensus 153 ~~~ 155 (378)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 654
No 200
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.16 E-value=1.5e-05 Score=69.05 Aligned_cols=81 Identities=14% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEe------------------C--------------------
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD------------------A-------------------- 113 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd------------------~-------------------- 113 (378)
+++.+++.|.-+.||+|+++.+++.++.+. ++.+..+. |
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 357789999999999999999998887541 22222211 1
Q ss_pred ------cCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHHHH
Q 017071 114 ------YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 114 ------~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
+++.++++++||+|+||++ +.+|+. ..|..+.+.|.++|.+.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence 2245688999999999988 678854 48999999999998753
No 201
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.16 E-value=1.6e-05 Score=60.49 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=47.6
Q ss_pred cCCCcEEEEEec-------CCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH-------HHHH--HcCCCCCcEEEEE
Q 017071 71 GKNRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-------DLAK--EYNILAYPTLYLF 134 (378)
Q Consensus 71 ~~~~~~lv~F~a-------~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~--~~~v~~~Pt~~~~ 134 (378)
.++++++|.|++ +|||.|+...|.+++.-....++..++.|.+...+ ..-. ++++.++||++-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 456899999996 59999999999999988876667888888764322 2333 5999999999999
Q ss_pred eCC
Q 017071 135 VAG 137 (378)
Q Consensus 135 ~~g 137 (378)
..+
T Consensus 97 ~~~ 99 (119)
T PF06110_consen 97 ETG 99 (119)
T ss_dssp TSS
T ss_pred CCC
Confidence 866
No 202
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.3e-05 Score=68.25 Aligned_cols=112 Identities=22% Similarity=0.279 Sum_probs=87.2
Q ss_pred ccCCCcEEcChhcHHHHhcC-C--CcEEEEEecC----CChhHHhhHHHHHHHHHHhcC--------CcEEEEEeCcCcH
Q 017071 53 LYAKDVVSLNGKNFSEFMGK-N--RNVMVMFYAN----WCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLEK 117 (378)
Q Consensus 53 ~~~~~v~~l~~~~~~~~~~~-~--~~~lv~F~a~----wC~~C~~~~p~~~~~~~~~~~--------~~~~~~vd~~~~~ 117 (378)
.++..|+.+++++|.+.+.. . -.++|.|.|. .|.-|+++..++.-+++.+.. ++-|..||.++.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 35578999999999998842 2 2478888884 599999999999999887643 6889999999999
Q ss_pred HHHHHcCCCCCcEEEEEe--CCeE--eee---eeCCCCHHHHHHHHHHHhcCCc
Q 017071 118 DLAKEYNILAYPTLYLFV--AGVR--QFQ---FFGERTRDVISAWVREKMTLGT 164 (378)
Q Consensus 118 ~~~~~~~v~~~Pt~~~~~--~g~~--~~~---~~g~~~~~~l~~~i~~~~~~~~ 164 (378)
++-+.++++..|++++|. .|+. ... ++-...++++.+|+.+.....+
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 999999999999999995 3322 112 2223448999999988774433
No 203
>PLN02309 5'-adenylylsulfate reductase
Probab=98.15 E-value=1.8e-05 Score=74.73 Aligned_cols=96 Identities=9% Similarity=0.169 Sum_probs=73.7
Q ss_pred CcccCCCHHHHHHhh---ccCCeEEEEEEcCCCCcc---HHHHHHHh-ccCC-ceeEEEE----ccHHHHh-hcCCCCCC
Q 017071 163 GTYSITTTDEAERIL---TVESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQT----TSADVAE-FFHIHPKS 229 (378)
Q Consensus 163 ~~~~i~~~~~~~~~~---~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~----~~~~~~~-~~~i~~~~ 229 (378)
.+..+ +.+++++++ +.++.++|.||++||.+. .+.|.+++ .+.+ .+.|+.+ .+.+++. +|+|..
T Consensus 346 ~Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~-- 422 (457)
T PLN02309 346 NVVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS-- 422 (457)
T ss_pred CcEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce--
Confidence 45555 567787776 357899999999999874 45677777 4433 4777765 3456775 699986
Q ss_pred CCCeEEEeecCCCCccccCC-CCCHHHHHHHHHh
Q 017071 230 KRPALIFLHLEAGKATPFRH-QFTRLAIANFVTH 262 (378)
Q Consensus 230 ~~P~i~~~~~~~~~~~~y~g-~~~~~~l~~fi~~ 262 (378)
+||+++|+.+...+..|.| .++.++|..||+.
T Consensus 423 -~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 423 -FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred -eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 9999999988778889985 6999999999985
No 204
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.14 E-value=2.1e-05 Score=59.25 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=63.7
Q ss_pred HHHHHhhccCCeEEEEEEcCCCCcc---HHHHHHHh-cc---CCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecC
Q 017071 171 DEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KL---HSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (378)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~---~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~ 240 (378)
+++++. ..++.++|.|+++||.+. .+.+.+++ .+ ...+.++.. ..++++++|++.+ +|++++|+.+
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~---~Pt~~l~~~~ 82 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRG---YPTIKLLKGD 82 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCcc---ccEEEEEcCC
Confidence 555654 456789999999999863 34455555 33 234666543 4678999999987 9999999754
Q ss_pred CCCccccCCCCCHHHHHHHHHh
Q 017071 241 AGKATPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 241 ~~~~~~y~g~~~~~~l~~fi~~ 262 (378)
....|.|..+.++|.+|+++
T Consensus 83 --~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 83 --LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred --CceeecCCCCHHHHHHHHHh
Confidence 45678999999999999975
No 205
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.12 E-value=3e-05 Score=58.21 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=64.7
Q ss_pred CHHHHHHhhcc--CCeEEEEEEcCCCCcc---HHHHHHHhccCCceeEEEE---cc---HHHHhhcCCCCCCCCCeEEEe
Q 017071 169 TTDEAERILTV--ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TS---ADVAEFFHIHPKSKRPALIFL 237 (378)
Q Consensus 169 ~~~~~~~~~~~--~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~---~~~~~~~~i~~~~~~P~i~~~ 237 (378)
+.+++++.+.+ +++++|.|+++||++. .+.+..+++...++.|+.+ .+ .+++++|++.. +|++++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~---~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIE---VPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCc---CCEEEEE
Confidence 56778888765 6899999999999974 4566666643367777755 22 37899999987 9999999
Q ss_pred ecCCCCccccCCCCCHHHHHHHHHh
Q 017071 238 HLEAGKATPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (378)
+++. ....+.|. ..+.|.+-+..
T Consensus 79 ~~G~-~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 79 KDGE-KIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred eCCe-EEEEEeCC-CHHHHHHHHHh
Confidence 8764 56677775 55666665543
No 206
>PTZ00051 thioredoxin; Provisional
Probab=98.10 E-value=2.3e-05 Score=58.17 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=66.5
Q ss_pred cccCCCHHHHHHhhccCCeEEEEEEcCCCCccH---HHHHHHhccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEe
Q 017071 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL 237 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~ 237 (378)
+.++.+.+++.+.++.++.+++.|+.+||.+.. +.+..++....++.|..+ .+.+++++|++.. +|++++|
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~---~Pt~~~~ 78 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITS---MPTFKVF 78 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCce---eeEEEEE
Confidence 567888999999999999999999999998743 446666654456777654 4568999999986 9999999
Q ss_pred ecCCCCccccCCCCCHHHHH
Q 017071 238 HLEAGKATPFRHQFTRLAIA 257 (378)
Q Consensus 238 ~~~~~~~~~y~g~~~~~~l~ 257 (378)
+.+. ....+.|. ..++|.
T Consensus 79 ~~g~-~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 79 KNGS-VVDTLLGA-NDEALK 96 (98)
T ss_pred eCCe-EEEEEeCC-CHHHhh
Confidence 8663 44566664 445443
No 207
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.07 E-value=2.8e-05 Score=59.47 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=65.0
Q ss_pred CcccCCCHHHHHHhhccC---CeEEEEEEcCCCCcc---HHHHHHHhccCCceeEEEEccH--HHHhhcCCCCCCCCCeE
Q 017071 163 GTYSITTTDEAERILTVE---SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPAL 234 (378)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~---~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~--~~~~~~~i~~~~~~P~i 234 (378)
.+.++++ +++.+.+... ..++|.|+++||++. .+.+..++....++.|+.+... +++++|++.. .|++
T Consensus 5 ~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~~---~Pt~ 80 (113)
T cd02957 5 EVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIKV---LPTL 80 (113)
T ss_pred eEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCCc---CCEE
Confidence 4556666 7777776554 788999999999874 4567777755556777765322 8899999986 9999
Q ss_pred EEeecCCCCccccCC-------CCCHHHHHHHH
Q 017071 235 IFLHLEAGKATPFRH-------QFTRLAIANFV 260 (378)
Q Consensus 235 ~~~~~~~~~~~~y~g-------~~~~~~l~~fi 260 (378)
++|+.+. ....+.| +++.+.|.+|+
T Consensus 81 ~~f~~G~-~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 81 LVYKNGE-LIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEECCE-EEEEEecHHHhCCCCCCHHHHHHHh
Confidence 9999874 2333333 24566777665
No 208
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.06 E-value=2e-05 Score=66.87 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=56.1
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcE--EEEE--------------------------------------
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD--LVMV-------------------------------------- 111 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~--~~~v-------------------------------------- 111 (378)
.+++.++.|..+.|++|+++.+.+.+. .+++. +..+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 357899999999999999999998761 12222 2211
Q ss_pred -----eCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHH
Q 017071 112 -----DAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 112 -----d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (378)
+.+++..+++++||+++|+++ +.+|+. +.|..+.+.|.++|
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 112335688899999999997 778854 57888888887764
No 209
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=1.9e-05 Score=58.51 Aligned_cols=72 Identities=24% Similarity=0.370 Sum_probs=56.2
Q ss_pred cHHHHh---cCCCcEEEEEec--------CCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc-------HHHHHHcCC-
Q 017071 65 NFSEFM---GKNRNVMVMFYA--------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------KDLAKEYNI- 125 (378)
Q Consensus 65 ~~~~~~---~~~~~~lv~F~a--------~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~v- 125 (378)
.|++.+ .+++.++|+|++ +|||.|.+..|.+.++-+....++.|+.|++.+- ..+-...++
T Consensus 14 ~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~l 93 (128)
T KOG3425|consen 14 SFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGIL 93 (128)
T ss_pred HHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCce
Confidence 444444 356669999997 7999999999999999887777999999997543 345556666
Q ss_pred CCCcEEEEEeC
Q 017071 126 LAYPTLYLFVA 136 (378)
Q Consensus 126 ~~~Pt~~~~~~ 136 (378)
.++||++=+++
T Consensus 94 t~vPTLlrw~~ 104 (128)
T KOG3425|consen 94 TAVPTLLRWKR 104 (128)
T ss_pred eecceeeEEcC
Confidence 89999987774
No 210
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.04 E-value=3.6e-05 Score=57.83 Aligned_cols=98 Identities=13% Similarity=0.029 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCcccCCCHHHHHHhhccCCeEEEEEEcCC--CCc---cHHHHHHHh-ccCCceeEEEE---ccHHHHhhc
Q 017071 153 SAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDL--EGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFF 223 (378)
Q Consensus 153 ~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~f~~~~--~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~ 223 (378)
.+++....+ ..++ +..+++++++.+..+++.|+++| |.+ ..+.+.+++ ++.+.+.|+.+ .+++++.+|
T Consensus 3 ~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f 79 (111)
T cd02965 3 VARLQTRHG--WPRV-DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARF 79 (111)
T ss_pred hHHHHHhcC--Cccc-ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHc
Confidence 344444442 3333 56778888888899999999996 765 455677777 45566777654 678999999
Q ss_pred CCCCCCCCCeEEEeecCCCCccccCCCCCHHHHH
Q 017071 224 HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIA 257 (378)
Q Consensus 224 ~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~ 257 (378)
+|.+ .||+++|+++. ....+.|..+.+++.
T Consensus 80 ~V~s---IPTli~fkdGk-~v~~~~G~~~~~e~~ 109 (111)
T cd02965 80 GVLR---TPALLFFRDGR-YVGVLAGIRDWDEYV 109 (111)
T ss_pred CCCc---CCEEEEEECCE-EEEEEeCccCHHHHh
Confidence 9997 99999999874 444667877766653
No 211
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.04 E-value=6.6e-05 Score=56.26 Aligned_cols=83 Identities=17% Similarity=0.307 Sum_probs=62.0
Q ss_pred CCeEEEEEEcCCCCc---cHHHHHHHh-ccCCceeEEEEcc---HHHHhhcCCCCCCCCCeEEEeecCCCCccccC-CCC
Q 017071 180 ESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQTTS---ADVAEFFHIHPKSKRPALIFLHLEAGKATPFR-HQF 251 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~~~---~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~-g~~ 251 (378)
..++++.|+++||++ ..+.+.++| ++++++.|+.+.. +.+++.|++.. .+.|++++++..++....+. |.+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~-~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKE-EDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCCh-hhCCEEEEEecccccccCCCcccc
Confidence 567888899998864 456677888 6778899987643 45999999982 13899999998533444454 446
Q ss_pred CHHHHHHHHHhc
Q 017071 252 TRLAIANFVTHT 263 (378)
Q Consensus 252 ~~~~l~~fi~~~ 263 (378)
+.++|.+||.+.
T Consensus 91 ~~~~l~~fi~~~ 102 (103)
T cd02982 91 TAESLEEFVEDF 102 (103)
T ss_pred CHHHHHHHHHhh
Confidence 899999999753
No 212
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.04 E-value=0.00019 Score=56.19 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=81.4
Q ss_pred CcEEcChhcHH-HHhcCCCcEEEEEecC--CChh-H-HhhHHHHHHHHHHhcCC-cEEEEEeCcCcHHHHHHcCCC--CC
Q 017071 57 DVVSLNGKNFS-EFMGKNRNVMVMFYAN--WCYW-S-KKLAPEFAAAAKMLKGE-ADLVMVDAYLEKDLAKEYNIL--AY 128 (378)
Q Consensus 57 ~v~~l~~~~~~-~~~~~~~~~lv~F~a~--wC~~-C-~~~~p~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~--~~ 128 (378)
.+++|+.++.- ..-..++..+|-|.-. .|.. + ......+.++|++++++ +.|+-+|.++...+.+.||+. ++
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 56778877664 3334456666666432 2322 3 45678899999999998 999999999999999999995 49
Q ss_pred cEEEEEeCCeEeee-eeCCCCHHHHHHHHHHHhcCCc
Q 017071 129 PTLYLFVAGVRQFQ-FFGERTRDVISAWVREKMTLGT 164 (378)
Q Consensus 129 Pt~~~~~~g~~~~~-~~g~~~~~~l~~~i~~~~~~~~ 164 (378)
|++++++..+..+. +.|..+.+.+.+|+++.+....
T Consensus 83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 99999983222333 7799999999999999986654
No 213
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.03 E-value=4.7e-05 Score=56.54 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=72.3
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHH---HHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEE
Q 017071 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAP---EFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p---~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (378)
.....++.++++..+..+... |.|++..|..|.+... .+-++.+.+.+.+..+.++-..+..+..+||+..+|+++
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~-vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDA-VLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCE-EEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred cCCeeechhhHHHHHhCCCcE-EEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 355678888999998776654 4566666655554433 667777778878888888877889999999999999999
Q ss_pred EEeCCeEeeeeeCCCCHHH
Q 017071 133 LFVAGVRQFQFFGERTRDV 151 (378)
Q Consensus 133 ~~~~g~~~~~~~g~~~~~~ 151 (378)
++++|+......|.++.++
T Consensus 88 f~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 88 FFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp EEETTEEEEEEESSSTHHH
T ss_pred EEECCEEEEEecCeecccc
Confidence 9999999999999988765
No 214
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.02 E-value=4.1e-05 Score=51.17 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=42.4
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHH----HHcCCCCCcEEEEEeCCe
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~ 138 (378)
++.|+.+||++|++....|++. ++.+-.+|++++++.. +..|..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 4779999999999999888442 6888889988875433 3349999999986 664
No 215
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.98 E-value=7.5e-05 Score=61.72 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=71.8
Q ss_pred CCcccCCCHHHHHHhhccC---CeEEEEEEcCCCCcc---HHHHHHHhccCCceeEEEEccH--HHHhhcCCCCCCCCCe
Q 017071 162 LGTYSITTTDEAERILTVE---SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPA 233 (378)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~---~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~--~~~~~~~i~~~~~~P~ 233 (378)
..+.+|++.+++.+.+... ..++|.|+++||++. .+.+..+|.....+.|..+... .++.+|++.. .||
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~~---vPT 138 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFDTDA---LPA 138 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccchhhHHhCCCCC---CCE
Confidence 4567787767777776543 388999999999874 4567788865678899876443 5899999986 999
Q ss_pred EEEeecCCCC--cccc----CCCCCHHHHHHHHHhc
Q 017071 234 LIFLHLEAGK--ATPF----RHQFTRLAIANFVTHT 263 (378)
Q Consensus 234 i~~~~~~~~~--~~~y----~g~~~~~~l~~fi~~~ 263 (378)
+++|+.+... ..-+ ..+++.++|..|+..+
T Consensus 139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9999987421 1111 2357889999988764
No 216
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.96 E-value=9.1e-05 Score=56.19 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=71.7
Q ss_pred EcChhcHHHHhcCCCcEEEEE---ecCCChhHHhhHHHHHHHHHHhc-CCcEEEEEeCcCcHHHHHHcCCCC----CcEE
Q 017071 60 SLNGKNFSEFMGKNRNVMVMF---YANWCYWSKKLAPEFAAAAKMLK-GEADLVMVDAYLEKDLAKEYNILA----YPTL 131 (378)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv~F---~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~----~Pt~ 131 (378)
.+|.++..... ..+..++++ |+..-..-....+.+.++|+.++ +++.|+.+|.++.....+.||+.. .|++
T Consensus 3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~ 81 (111)
T cd03073 3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVV 81 (111)
T ss_pred eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEE
Confidence 35566666654 233333332 22233445678899999999999 699999999999888999999984 9999
Q ss_pred EEEe-CCeEeeeeeCCC-CHHHHHHHHHHH
Q 017071 132 YLFV-AGVRQFQFFGER-TRDVISAWVREK 159 (378)
Q Consensus 132 ~~~~-~g~~~~~~~g~~-~~~~l~~~i~~~ 159 (378)
.+++ ++ ..+...+.. +.+.|.+|+++.
T Consensus 82 ~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 82 AIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 9988 44 333346777 999999999864
No 217
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.96 E-value=7.9e-05 Score=55.13 Aligned_cols=87 Identities=18% Similarity=0.259 Sum_probs=63.1
Q ss_pred CHHHHHHhhccC--CeEEEEEEcCCCCcc---HHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeec
Q 017071 169 TTDEAERILTVE--SKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL 239 (378)
Q Consensus 169 ~~~~~~~~~~~~--~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~ 239 (378)
|.+++++.+... +.++|.|+++||.+. .+.+.+++ .+..++.|+.+ ..++++++|++.. +|++++|+.
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~---~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITA---VPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCcc---ccEEEEEEC
Confidence 356777777776 899999999999863 44566666 33667777765 4668899999986 999999986
Q ss_pred CCCCccccCCCCCHHHHHHHH
Q 017071 240 EAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 240 ~~~~~~~y~g~~~~~~l~~fi 260 (378)
+. ....+.|. +.++|.+.|
T Consensus 78 g~-~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 78 GT-IVDRVSGA-DPKELAKKV 96 (97)
T ss_pred CE-EEEEEeCC-CHHHHHHhh
Confidence 53 33444554 567777765
No 218
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=97.95 E-value=4.9e-05 Score=54.73 Aligned_cols=83 Identities=11% Similarity=0.157 Sum_probs=62.7
Q ss_pred cccCCCHHHHHHhhccCCeEEEEEEcCCCCccHHHHHHHh-ccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecC-C
Q 017071 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLE-A 241 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~-~ 241 (378)
+.++.+.+++.. +...+..+|+||.+..++++..|..+| .++++|.|++....... .....+ +.+++|++. .
T Consensus 1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~~-~~~~~~----~~~i~frp~~~ 74 (91)
T cd03070 1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVTK-PERPPG----DNIIYFPPGHN 74 (91)
T ss_pred CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEeccccc-cccCCC----CCeEEECCCCC
Confidence 346677788877 667888999999999999999999988 78899999987765442 222222 456668876 5
Q ss_pred CCccccCCCCC
Q 017071 242 GKATPFRHQFT 252 (378)
Q Consensus 242 ~~~~~y~g~~~ 252 (378)
.....|.|+++
T Consensus 75 ~~~~~y~G~~t 85 (91)
T cd03070 75 APDMVYLGSLT 85 (91)
T ss_pred CCceEEccCCC
Confidence 56689999974
No 219
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.95 E-value=6.7e-05 Score=74.06 Aligned_cols=92 Identities=16% Similarity=0.270 Sum_probs=73.9
Q ss_pred EcChhcHHHHhcCCCcEEE-EEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCe
Q 017071 60 SLNGKNFSEFMGKNRNVMV-MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv-~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 138 (378)
.|+.+..+++..=++++-| .|.++||++|......+++++.+.. ++..-.+|..+.++++++|+|.++|++++ ||+
T Consensus 462 ~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~ 538 (555)
T TIGR03143 462 PLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ 538 (555)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCE
Confidence 4555555544433466645 4689999999999999999999865 79999999999999999999999999877 664
Q ss_pred EeeeeeCCCCHHHHHHHH
Q 017071 139 RQFQFFGERTRDVISAWV 156 (378)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i 156 (378)
. .+.|..+.+++.+||
T Consensus 539 ~--~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 539 Q--VYFGKKTIEEMLELI 554 (555)
T ss_pred E--EEeeCCCHHHHHHhh
Confidence 3 366988999999886
No 220
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.95 E-value=6.6e-05 Score=59.89 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=65.2
Q ss_pred HHHHHhhccCCeEEEEEEcCCCCcc---HHHHHHHh-ccCCceeEEEE--c---cHHHHhhcCCCCCCCCCeEEEeecCC
Q 017071 171 DEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT--T---SADVAEFFHIHPKSKRPALIFLHLEA 241 (378)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~--~---~~~~~~~~~i~~~~~~P~i~~~~~~~ 241 (378)
.++++.+..+++++|.|+++||.+. .+.+.+++ .+.+++.|..+ . ..+++++|++.. +|++++|..++
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~---iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG---IPHFVFLDREG 87 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC---CCEEEEECCCC
Confidence 3455666778899999999999874 44555555 44455666643 2 246889999986 99999997544
Q ss_pred CCccccCCCCCHHHHHHHHHhc
Q 017071 242 GKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 242 ~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
.....+.|..+.+.|.++|...
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l 109 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHH
Confidence 4555677888888888888763
No 221
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.00013 Score=54.53 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=67.8
Q ss_pred hhcHHHHh--cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEe
Q 017071 63 GKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140 (378)
Q Consensus 63 ~~~~~~~~--~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 140 (378)
+...++++ ...+.++|-|-..|-+.|.++...+.++++...+-..++-||.++-+++.+-|++...||+++|-+++-+
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence 44566666 4568899999999999999999999999999988778888999999999999999999999998877544
No 222
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.91 E-value=0.00011 Score=59.47 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=28.6
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG 104 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~ 104 (378)
..+++++.|+.++|++|+.+.|.+.++...+++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 467889999999999999999999998777653
No 223
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.91 E-value=0.00013 Score=61.14 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=69.6
Q ss_pred CCcccCCCHHHHHHhhccC--CeEEEEEEcCCCCc---cHHHHHHHhccCCceeEEEEccHHHHhhcCCCCCCCCCeEEE
Q 017071 162 LGTYSITTTDEAERILTVE--SKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF 236 (378)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~~--~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~ 236 (378)
..+..++..+......+.. ..++|-||++||++ ..+.+..+|..+..++|..+.......+|++.. .||+++
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~~---lPTlli 158 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCIPNYPDKN---LPTILV 158 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhHhhCCCCC---CCEEEE
Confidence 4566775444444444443 47889999999987 446788888666789999887667788999987 999999
Q ss_pred eecCCCCcccc------CC-CCCHHHHHHHHHhc
Q 017071 237 LHLEAGKATPF------RH-QFTRLAIANFVTHT 263 (378)
Q Consensus 237 ~~~~~~~~~~y------~g-~~~~~~l~~fi~~~ 263 (378)
|+.+. ....+ .| .++.++|..++.+.
T Consensus 159 yk~G~-~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 159 YRNGD-IVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EECCE-EEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 99874 11122 22 47888888888653
No 224
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.89 E-value=0.00018 Score=56.63 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=56.4
Q ss_pred cccCCCHHHHHHhhc--cCCeEEEEEEcCCCCc---cHHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeE
Q 017071 164 TYSITTTDEAERILT--VESKLVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~--~~~~~~v~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i 234 (378)
+..+.+.+++++.+. .+++++|-|+++||++ ..+.+.++| ++.+.+.|+.+ .++++++.|++.. .|++
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~---~~t~ 81 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD---PCTV 81 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccC---CCcE
Confidence 356678999998885 4678999999999998 456777877 44455666654 6789999999984 4556
Q ss_pred E-EeecCC
Q 017071 235 I-FLHLEA 241 (378)
Q Consensus 235 ~-~~~~~~ 241 (378)
+ +|+.+.
T Consensus 82 ~~ffk~g~ 89 (142)
T PLN00410 82 MFFFRNKH 89 (142)
T ss_pred EEEEECCe
Confidence 6 888763
No 225
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.85 E-value=0.00011 Score=53.46 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=64.3
Q ss_pred HHHHhhccCCeEEEEEEcCCCCcc---HHHHHHHhccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecCCCCcc
Q 017071 172 EAERILTVESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKAT 245 (378)
Q Consensus 172 ~~~~~~~~~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~ 245 (378)
++++.++.+.++++.|+.+||... .+.+.+++....++.|+.+ .+.++++.+++.. .|++++++.+. ...
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~---~P~~~~~~~g~-~~~ 77 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRS---IPTFLFFKNGK-EVD 77 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCccc---ccEEEEEECCE-EEE
Confidence 355566666888999999999874 3445555544667777754 4678999999986 89999998764 566
Q ss_pred ccCCCCCHHHHHHHHH
Q 017071 246 PFRHQFTRLAIANFVT 261 (378)
Q Consensus 246 ~y~g~~~~~~l~~fi~ 261 (378)
.+.|..+.+.|.+||+
T Consensus 78 ~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 78 RVVGADPKEELEEFLE 93 (93)
T ss_pred EEecCCCHHHHHHHhC
Confidence 7778878899999873
No 226
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.85 E-value=0.00014 Score=63.88 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=60.0
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeC---------------------------------------
Q 017071 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--------------------------------------- 113 (378)
Q Consensus 73 ~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~--------------------------------------- 113 (378)
.+.+++.|.-+.|++|+++.+.+.++.+. +++.+..+..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 35688899999999999999998776543 1233222210
Q ss_pred -----------cCcHHHHHHcCCCCCcEEEEEe-CCeEeeeeeCCCCHHHHHHHHH
Q 017071 114 -----------YLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVR 157 (378)
Q Consensus 114 -----------~~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~ 157 (378)
+++..+++++||+|+|++++-+ +| .+....|..+.++|.+++.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 0123467789999999999988 57 6667889999999988764
No 227
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00034 Score=55.84 Aligned_cols=102 Identities=13% Similarity=0.184 Sum_probs=73.9
Q ss_pred cEEcChhcHHHHhcCCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCc---------------------
Q 017071 58 VVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY--------------------- 114 (378)
Q Consensus 58 v~~l~~~~~~~~~~~~~~~lv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~--------------------- 114 (378)
+..-+++.+......+++|+++|| ..|++-|-.++-.|.....+++. +..++.|..|
T Consensus 15 Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD 94 (157)
T COG1225 15 LPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSD 94 (157)
T ss_pred eecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeEC
Confidence 333444444433357889999999 57999999999999999988887 7888888753
Q ss_pred CcHHHHHHcCCCC------------CcEEEEEe-CCeEeeeeeCC---CCHHHHHHHHHHH
Q 017071 115 LEKDLAKEYNILA------------YPTLYLFV-AGVRQFQFFGE---RTRDVISAWVREK 159 (378)
Q Consensus 115 ~~~~~~~~~~v~~------------~Pt~~~~~-~g~~~~~~~g~---~~~~~l~~~i~~~ 159 (378)
.+..+++.||+.+ .+++++++ +|++...+... -..+++.+.+.+.
T Consensus 95 ~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 95 EDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred CcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 4577899999843 46888998 79777766432 3456666666543
No 228
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.84 E-value=0.00014 Score=51.59 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=43.5
Q ss_pred CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc---HHHHHHcCCCCCcEEEEEeCCeE
Q 017071 74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE---KDLAKEYNILAYPTLYLFVAGVR 139 (378)
Q Consensus 74 ~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~Pt~~~~~~g~~ 139 (378)
+.-++.|..+||++|++....|++. ++.+-.+|++++ ..+.+..|...+|.+++ +|+.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 67 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL 67 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence 3446789999999999999988642 567777888766 34555678899999854 6743
No 229
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.84 E-value=0.00023 Score=54.36 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=62.4
Q ss_pred HHHhhccCCeEEEEEEcCCCCccH---HHHHHHhccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecCCC-Ccc
Q 017071 173 AERILTVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAG-KAT 245 (378)
Q Consensus 173 ~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~~~-~~~ 245 (378)
+.+.+......++.|+++||++.. +.+.+++...+.+.|..+ .+++++++|++.. .|++++|+.++. ...
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~---vPt~~i~~~g~~~~~~ 91 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVER---VPTTIFLQDGGKDGGI 91 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCc---CCEEEEEeCCeecceE
Confidence 334444555667777899998754 556666644466777654 6788999999997 899999987532 334
Q ss_pred ccCCCCCHHHHHHHHHh
Q 017071 246 PFRHQFTRLAIANFVTH 262 (378)
Q Consensus 246 ~y~g~~~~~~l~~fi~~ 262 (378)
.|.|-....++.+||..
T Consensus 92 ~~~G~~~~~el~~~i~~ 108 (113)
T cd02975 92 RYYGLPAGYEFASLIED 108 (113)
T ss_pred EEEecCchHHHHHHHHH
Confidence 68887777888888864
No 230
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.83 E-value=0.00015 Score=53.74 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=62.1
Q ss_pred HhhccCCeEEEEEEcCCCCccH---HHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecCCCCcccc
Q 017071 175 RILTVESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPF 247 (378)
Q Consensus 175 ~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y 247 (378)
.+.+.++++++.|+++||.... +.+..++ .+.+++.+..+ .++++++++++.. .|++++|+++ .....+
T Consensus 8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~---vPt~~i~~~g-~~v~~~ 83 (97)
T cd02949 8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMG---TPTVQFFKDK-ELVKEI 83 (97)
T ss_pred HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCee---ccEEEEEECC-eEEEEE
Confidence 3445678889999999998743 4455555 44456666654 5778999999986 9999999864 456677
Q ss_pred CCCCCHHHHHHHHH
Q 017071 248 RHQFTRLAIANFVT 261 (378)
Q Consensus 248 ~g~~~~~~l~~fi~ 261 (378)
.|..+.++|.+|++
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 88888899999874
No 231
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.81 E-value=0.00035 Score=51.63 Aligned_cols=91 Identities=14% Similarity=0.217 Sum_probs=64.7
Q ss_pred ChhcHHHHhcC--CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHH----HHHHcCCCC-CcEEEEE
Q 017071 62 NGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILA-YPTLYLF 134 (378)
Q Consensus 62 ~~~~~~~~~~~--~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~-~Pt~~~~ 134 (378)
+.+++++++.. .++++|.=.++.|+-+......|++......+.+.++.+|+-+++. ++++|||.. -|.++++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 45677777744 7888888899999999999999999998887679999999988764 678999974 7999999
Q ss_pred eCCeEeeeee-CCCCHHHH
Q 017071 135 VAGVRQFQFF-GERTRDVI 152 (378)
Q Consensus 135 ~~g~~~~~~~-g~~~~~~l 152 (378)
++|+.+..-. +..+.+.|
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 9998766443 34555554
No 232
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.80 E-value=0.00031 Score=52.79 Aligned_cols=95 Identities=11% Similarity=0.168 Sum_probs=68.0
Q ss_pred CHHHHHHhhccCCeEEEEEEcC-CCCccHHHHHHHh----ccCCceeEEEE--------ccHHHHhhcCCCCCCCCCeEE
Q 017071 169 TTDEAERILTVESKLVLGFLHD-LEGMESEELAAAS----KLHSDVNFYQT--------TSADVAEFFHIHPKSKRPALI 235 (378)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~-~~~~~~~~~~~~a----~~~~~~~f~~~--------~~~~~~~~~~i~~~~~~P~i~ 235 (378)
+.-.+++.+...+.++|.|=.. .-+.-.+.|...| ....++-++.+ .|.+++++|++.. ..+|.+.
T Consensus 10 D~~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k-e~fPv~~ 88 (126)
T PF07912_consen 10 DELTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK-EDFPVIY 88 (126)
T ss_dssp STTHHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC-CC-SEEE
T ss_pred cceehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc-ccCCEEE
Confidence 3457888999999999988432 1233445555444 45567777754 6789999999975 3589999
Q ss_pred EeecCCCCcccc--CCCCCHHHHHHHHHhcC
Q 017071 236 FLHLEAGKATPF--RHQFTRLAIANFVTHTK 264 (378)
Q Consensus 236 ~~~~~~~~~~~y--~g~~~~~~l~~fi~~~~ 264 (378)
+|..+.+.++.| +|+++.+.|..|++.+.
T Consensus 89 LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 89 LFVGDKEEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp EEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred EecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence 999777899989 89999999999999985
No 233
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.79 E-value=0.00018 Score=70.46 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=76.6
Q ss_pred EcChhcHHHHhcCCCc-EEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCe
Q 017071 60 SLNGKNFSEFMGKNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 60 ~l~~~~~~~~~~~~~~-~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 138 (378)
.|+++..+.+..=+++ -+-.|.+++|++|......+++++...+ ++..-.+|..+.++++++|+|.++|++++ +|+
T Consensus 102 ~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~ 178 (517)
T PRK15317 102 KLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGE 178 (517)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCc
Confidence 3555555444332344 4778999999999999999999998755 89999999999999999999999999976 563
Q ss_pred EeeeeeCCCCHHHHHHHHHHHh
Q 017071 139 RQFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~~ 160 (378)
..+.|..+.+++.+.+.+..
T Consensus 179 --~~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 179 --EFGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred --EEEecCCCHHHHHHHHhccc
Confidence 35779999998888887644
No 234
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.78 E-value=0.00029 Score=57.54 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=63.6
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHh--cCCcEEEEEeCcC----------------------------------
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYL---------------------------------- 115 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~--~~~~~~~~vd~~~---------------------------------- 115 (378)
..+++++.|+..-|++|+.+.+.+.++.+++ .+++.+..++.-.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4578899999999999999999999999998 5677777765410
Q ss_pred ----------------------------------cHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHHH
Q 017071 116 ----------------------------------EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158 (378)
Q Consensus 116 ----------------------------------~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 158 (378)
....++++||.++||+++ ||+. +.|..+.++|.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 012346679999999988 8855 5889999999998864
No 235
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.76 E-value=0.00018 Score=51.90 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=53.9
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH----HHHHHcCC--CCCcEEEEEeCCeEeeeeeCCCCHH
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNI--LAYPTLYLFVAGVRQFQFFGERTRD 150 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v--~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (378)
++.|..+||++|.+....++++..+.. ++.+..+|.+.+. ++.+..|- .++|++++ +|+. .| ..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~----ig--G~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH----VG--GCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE----ec--CHH
Confidence 577899999999999999998865543 5778888887533 56666664 78999854 6633 23 347
Q ss_pred HHHHHHHHHh
Q 017071 151 VISAWVREKM 160 (378)
Q Consensus 151 ~l~~~i~~~~ 160 (378)
+|.+++++..
T Consensus 73 dl~~~~~~~~ 82 (86)
T TIGR02183 73 DFEQLVKENF 82 (86)
T ss_pred HHHHHHHhcc
Confidence 7888777654
No 236
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.76 E-value=2.1e-05 Score=59.63 Aligned_cols=57 Identities=25% Similarity=0.424 Sum_probs=46.9
Q ss_pred HHHHhhhcCcchhhhhhHhhcCCCCCC--CcEEEEEcCCCccccCCCCC-CHHHHHHHHHHHh
Q 017071 287 LLHVYVEMNSEGVGRRVSQEFGVSGNA--PRVIAYSARDAKKYVLNGEL-TLSSIKSFGEEFL 346 (378)
Q Consensus 287 l~f~~~d~~~~~~~~~l~~~~gi~~~~--~p~i~i~~~~~~~y~~~~~~-~~~~i~~Fi~~~~ 346 (378)
+.|+++|.+... ..++.||++.+. .|+++|.+..+++|++++++ +.++|.+|+++++
T Consensus 52 i~Fv~~D~~~~~---~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 52 LNFAVADKEDFS---HELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred EEEEEEcHHHHH---HHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence 367887776433 356999998877 99999998755899999999 9999999999874
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00027 Score=61.66 Aligned_cols=99 Identities=11% Similarity=0.179 Sum_probs=76.0
Q ss_pred cccCCCHHHHHHhhcc--CCeEEEEEEcCCCCccHH---HHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeE
Q 017071 164 TYSITTTDEAERILTV--ESKLVLGFLHDLEGMESE---ELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~--~~~~~v~f~~~~~~~~~~---~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i 234 (378)
+.++++.+.-...+++ ..+++|.|+++||++... .+..++ .+.+++.++.+ .++.++..||+.. .|++
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqs---IPtV 101 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQS---IPTV 101 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCc---CCeE
Confidence 6677554444444444 358999999999998554 445544 78899888865 6788999999997 9999
Q ss_pred EEeecCCCCccccCCCCCHHHHHHHHHhcCCC
Q 017071 235 IFLHLEAGKATPFRHQFTRLAIANFVTHTKHP 266 (378)
Q Consensus 235 ~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~P 266 (378)
++|+++. ...-|.|....+.|..|+.+..-+
T Consensus 102 ~af~dGq-pVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQ-PVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCc-CccccCCCCcHHHHHHHHHHhcCh
Confidence 9999873 445788988899999999887654
No 238
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00031 Score=52.65 Aligned_cols=79 Identities=14% Similarity=0.267 Sum_probs=59.4
Q ss_pred CCeEEEEEEcCCCCc---cHHHHHHHhccCCceeEEEE-cc--HHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCH
Q 017071 180 ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT-TS--ADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTR 253 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~-~~--~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~ 253 (378)
++.++|.|+++||+| ..+.|.++|..+.++.|..+ .+ .++++.+++.. .||+++|+.+. ....+-|. +.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~---~PTf~f~k~g~-~~~~~vGa-~~ 95 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKA---MPTFVFYKGGE-EVDEVVGA-NK 95 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceE---eeEEEEEECCE-EEEEEecC-CH
Confidence 578899999999998 56778888855555888854 34 88999999987 89999999875 44455554 44
Q ss_pred HHHHHHHHhc
Q 017071 254 LAIANFVTHT 263 (378)
Q Consensus 254 ~~l~~fi~~~ 263 (378)
+.+.+.|..+
T Consensus 96 ~~l~~~i~~~ 105 (106)
T KOG0907|consen 96 AELEKKIAKH 105 (106)
T ss_pred HHHHHHHHhc
Confidence 5777766553
No 239
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.69 E-value=0.00013 Score=52.08 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=42.8
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH-----HHHHHcCCCCCcEEEEEeCCeE
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGVR 139 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~g~~ 139 (378)
++.|+++||++|+...+.+.++.. .+.+..++.+.+. .+.+..|+.++|++ |.+|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 477999999999999999998755 4567777776552 35566788999996 446743
No 240
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.67 E-value=0.005 Score=60.44 Aligned_cols=170 Identities=11% Similarity=0.041 Sum_probs=116.4
Q ss_pred CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeE-eeeeeCCCCHHHH
Q 017071 74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR-QFQFFGERTRDVI 152 (378)
Q Consensus 74 ~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~g~~~~~~l 152 (378)
+++-+.++.+.|..|.++...++++++.- +++.+-..+.. ...|++.+.++|+. -.+|.|...-.++
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef 86 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHEF 86 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHHH
Confidence 45545555558999999999999998764 46665442211 24799999887643 4799999999999
Q ss_pred HHHHHHHhc--CCcccCCCHHHHHHhhccC-CeEEEEEEcCCCCccHH---HHHHHhccCCceeEEE---EccHHHHhhc
Q 017071 153 SAWVREKMT--LGTYSITTTDEAERILTVE-SKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQ---TTSADVAEFF 223 (378)
Q Consensus 153 ~~~i~~~~~--~~~~~i~~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~---~~~~~a~~~~~~~f~~---~~~~~~~~~~ 223 (378)
..||...+. .+-..+ +.+..+.+.+-+ +.-+-.|..+.|..... .+..++....++.+-. ...++++++|
T Consensus 87 ~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~ 165 (517)
T PRK15317 87 TSLVLALLQVGGHPPKL-DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEAR 165 (517)
T ss_pred HHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhc
Confidence 999988753 334444 444444444333 45577788888887544 3444554455665543 4778999999
Q ss_pred CCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhcC
Q 017071 224 HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTK 264 (378)
Q Consensus 224 ~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~ 264 (378)
++.. .|++++ . ....+.|..+.+++.+.+....
T Consensus 166 ~v~~---VP~~~i-~----~~~~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 166 NIMA---VPTVFL-N----GEEFGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred CCcc---cCEEEE-C----CcEEEecCCCHHHHHHHHhccc
Confidence 9986 899975 2 1245778888888888887643
No 241
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.64 E-value=0.00032 Score=48.75 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=48.2
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHc---CCCCCcEEEEEeCCeEeeeeeCCCCHHHHHH
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFVAGVRQFQFFGERTRDVISA 154 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 154 (378)
..|..+||++|++....|++. ++.+-.+|+++++.....+ |..++|++++ +|+ ...|..+.+.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~---~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD---LSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC---cEEeccCHHHHHh
Confidence 468889999999999988752 6888889998887665555 8888999744 442 2344566666654
No 242
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.63 E-value=0.00047 Score=61.21 Aligned_cols=185 Identities=12% Similarity=0.173 Sum_probs=103.4
Q ss_pred CcccCCCHHHHHHhhccCCeEEEEEEcCCCCc--c------HHHHHH-Hhcc--CCceeEEEE---ccHHHHhhcCCCCC
Q 017071 163 GTYSITTTDEAERILTVESKLVLGFLHDLEGM--E------SEELAA-ASKL--HSDVNFYQT---TSADVAEFFHIHPK 228 (378)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~--~------~~~~~~-~a~~--~~~~~f~~~---~~~~~~~~~~i~~~ 228 (378)
.+..+ +..++.+.+++.+..+|.|+.+..+. . .+.+.+ +|+. ...+.|+.+ .+..+++++|+..
T Consensus 35 RVi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E- 112 (383)
T PF01216_consen 35 RVIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE- 112 (383)
T ss_dssp -CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S-
T ss_pred ceEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc-
Confidence 45566 56888899999999999898775543 1 133444 3343 456788876 6788999999997
Q ss_pred CCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhcCCCceEEecccchhhhhcc---ch-----------HHHHHHhhhc
Q 017071 229 SKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQD---PR-----------KQLLHVYVEM 294 (378)
Q Consensus 229 ~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~P~~~~l~~~~~~~~~~~---~~-----------~~l~f~~~d~ 294 (378)
.++|.+|+.+ +.+.|+|.++.+.|..||..-.-.+|..++.+.-.+.|+. .. +++ -.+.++
T Consensus 113 --~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~y-k~FeeA 187 (383)
T PF01216_consen 113 --EGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHY-KEFEEA 187 (383)
T ss_dssp --TTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHH-HHHHHH
T ss_pred --cCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHH-HHHHHH
Confidence 7999999976 8999999999999999999866666777776543322221 11 121 001110
Q ss_pred Cc---------chhhhhhHhhcCCCCCCCcEEEEEcC-CCccccCC-CCCCHHHHHHHHHHHhcCce-eeeccCC
Q 017071 295 NS---------EGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLN-GELTLSSIKSFGEEFLEDKL-LNQSDQI 357 (378)
Q Consensus 295 ~~---------~~~~~~l~~~~gi~~~~~p~i~i~~~-~~~~y~~~-~~~~~~~i~~Fi~~~~~Gkl-~~kSe~~ 357 (378)
.. .-|.+.+++.+|+. .--+-++.+ -......+ .+.+.+.|.+||++...-.+ ..+-+-+
T Consensus 188 Ae~F~p~IkFfAtfd~~vAk~L~lK---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m 259 (383)
T PF01216_consen 188 AEHFQPYIKFFATFDKKVAKKLGLK---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDM 259 (383)
T ss_dssp HHHCTTTSEEEEE-SHHHHHHHT-S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGH
T ss_pred HHhhcCceeEEEEecchhhhhcCcc---ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhh
Confidence 00 01223455666763 223445555 23333333 47788999999999887766 5544433
No 243
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.59 E-value=0.00032 Score=48.33 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=41.8
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHH----HHHcCCCCCcEEEEEeCCeEee
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGVRQF 141 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~ 141 (378)
++.|+++||++|+...+.+.+.. +.+..+|++.+.+. .+..+...+|+++ .+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 56789999999999999988763 66778888877654 3345677888774 4774443
No 244
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.58 E-value=0.00053 Score=56.96 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEE
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLV 109 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~ 109 (378)
.+++.++.|+...|++|+.+.+.+.++.+++.+++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 57889999999999999999999999998886655554
No 245
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.57 E-value=0.0019 Score=49.28 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=63.1
Q ss_pred ChhcHHHHh--cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcE-EEEEeCCe
Q 017071 62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT-LYLFVAGV 138 (378)
Q Consensus 62 ~~~~~~~~~--~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt-~~~~~~g~ 138 (378)
++...++++ ..++.++|-|-.+|-+.|.++...+.+++++.++-..++.||.++-+++.+.|.+. -|. +++|-+|+
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 344566666 56789999999999999999999999999999988889999999999999999999 675 44554775
Q ss_pred Ee
Q 017071 139 RQ 140 (378)
Q Consensus 139 ~~ 140 (378)
.+
T Consensus 86 hm 87 (133)
T PF02966_consen 86 HM 87 (133)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 246
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.47 E-value=0.0011 Score=51.22 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=61.5
Q ss_pred CHHHHHHhhccCCeEEEEEEcCCCCc---cHHHHHHHhccCCceeEEEE-cc-------------HHHHhhcCCCC-CCC
Q 017071 169 TTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT-TS-------------ADVAEFFHIHP-KSK 230 (378)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~-~~-------------~~~~~~~~i~~-~~~ 230 (378)
+.+++.+.+++++..+|.|+.+||++ ..+.+.++++. .+..++.+ .+ .++.++|++.. -.+
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 66788889988888999999999987 34556666643 33444433 11 14556676542 134
Q ss_pred CCeEEEeecCCCCccccCC-CCCHHHHHHHHH
Q 017071 231 RPALIFLHLEAGKATPFRH-QFTRLAIANFVT 261 (378)
Q Consensus 231 ~P~i~~~~~~~~~~~~y~g-~~~~~~l~~fi~ 261 (378)
.|++++|+++... -...| ..+.++|.+|+.
T Consensus 91 ~PT~v~~k~Gk~v-~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 91 TPTFVHITDGKQV-SVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCEEEEEeCCeEE-EEEeCCCCCHHHHHHHhh
Confidence 7999999998533 34456 457899999874
No 247
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.47 E-value=0.001 Score=51.78 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=64.3
Q ss_pred HHHHHHhhccC-CeEEEEEEcCCCCccHHHHH------HHh-ccCCceeEEEE---c-------------cHHHHhhcCC
Q 017071 170 TDEAERILTVE-SKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQT---T-------------SADVAEFFHI 225 (378)
Q Consensus 170 ~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~---~-------------~~~~~~~~~i 225 (378)
.+++++.++.+ ++++|.|+++||.+....-. .+. .+..++.+..+ . ..+++.+|++
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 45677788888 89999999999987543321 222 22234444432 1 2578999999
Q ss_pred CCCCCCCeEEEeecC-CCCccccCCCCCHHHHHHHHHh
Q 017071 226 HPKSKRPALIFLHLE-AGKATPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 226 ~~~~~~P~i~~~~~~-~~~~~~y~g~~~~~~l~~fi~~ 262 (378)
.. +|+++++..+ +.....+.|..+.+.+.++|+.
T Consensus 83 ~~---~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 83 RF---TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred cc---ccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 86 9999999986 4566678888888888888765
No 248
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.47 E-value=0.0019 Score=45.90 Aligned_cols=72 Identities=11% Similarity=0.151 Sum_probs=52.7
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHH---HHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHH
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA---KEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (378)
+..|..+||++|+.....|++ .++.|-.+|++++++.. +..|...+|++++ +|. ..+..+.+.|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~----~~~Gf~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL----SWSGFRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE----EEecCCHHHHH
Confidence 567889999999999888854 27888899998877643 3457788999854 442 23356788888
Q ss_pred HHHHHHh
Q 017071 154 AWVREKM 160 (378)
Q Consensus 154 ~~i~~~~ 160 (378)
+++....
T Consensus 71 ~~~~~~~ 77 (81)
T PRK10329 71 RLHPAPH 77 (81)
T ss_pred HHHHhhh
Confidence 8776544
No 249
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.44 E-value=0.0013 Score=47.35 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=77.0
Q ss_pred ChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC--cHHHHHHcCCC----CCc-EEEEE
Q 017071 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNIL----AYP-TLYLF 134 (378)
Q Consensus 62 ~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~----~~P-t~~~~ 134 (378)
+-++|.+.+.....|||.|..+-- .-......+.++|+..++.-.++-|||.+ ...+|+++.|. --| ++.-|
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHY 86 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHY 86 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcc
Confidence 356788888888889998876643 33445568889999999988899999987 78899999998 444 35556
Q ss_pred eCCeEeeeeeCCCCHHHHHHHHHH
Q 017071 135 VAGVRQFQFFGERTRDVISAWVRE 158 (378)
Q Consensus 135 ~~g~~~~~~~g~~~~~~l~~~i~~ 158 (378)
++|.....|.-..+...|.+|++.
T Consensus 87 KdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 87 KDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cCCCccccccchhhHHHHHHHhhC
Confidence 799888899999999999999863
No 250
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.43 E-value=0.0012 Score=64.58 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=75.7
Q ss_pred EcChhcHHHHhcCCCc-EEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCe
Q 017071 60 SLNGKNFSEFMGKNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 60 ~l~~~~~~~~~~~~~~-~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 138 (378)
.|+++..+.+..=+++ -+-.|..+.|++|......+++++.... ++..-.+|..+.++++++|++.++|++++ +|+
T Consensus 103 ~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~ 179 (515)
T TIGR03140 103 KLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGE 179 (515)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCc
Confidence 4555555544432344 5778999999999999999999988866 78888999999999999999999999976 553
Q ss_pred EeeeeeCCCCHHHHHHHHHHH
Q 017071 139 RQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 139 ~~~~~~g~~~~~~l~~~i~~~ 159 (378)
..+.|..+.+++.+.+.+.
T Consensus 180 --~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 180 --EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred --EEEecCCCHHHHHHHHhhc
Confidence 3477999998887777655
No 251
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.42 E-value=0.00067 Score=48.30 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=60.8
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeC--CeEeeeeeCCCCHHHHHH
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA--GVRQFQFFGERTRDVISA 154 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~--g~~~~~~~g~~~~~~l~~ 154 (378)
++.|..+.|+-|......+.++.... .+.+-.||+++++++.++|+. .+|.+.+-+. ........+..+.+.|.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 67899999999999999998865543 589999999999999999996 6999666441 112355667899999999
Q ss_pred HHH
Q 017071 155 WVR 157 (378)
Q Consensus 155 ~i~ 157 (378)
||+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 252
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.41 E-value=0.0011 Score=49.93 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=54.1
Q ss_pred HHHHHhhc--cCCeEEEEEEcCCCCc---cHHHHHHHhccCCc-eeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecCC
Q 017071 171 DEAERILT--VESKLVLGFLHDLEGM---ESEELAAASKLHSD-VNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA 241 (378)
Q Consensus 171 ~~~~~~~~--~~~~~~v~f~~~~~~~---~~~~~~~~a~~~~~-~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~~ 241 (378)
+++++.+. .++.++|-|+++||++ ..+.+.++|....+ +.|+.+ ..+++++.|++.. .|+.++|+++.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~a---mPtfvffkngk 79 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISY---IPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCcee---CcEEEEEECCc
Confidence 44555554 4789999999999998 44678888844444 777765 6788999999985 79999999874
Q ss_pred CCcccc
Q 017071 242 GKATPF 247 (378)
Q Consensus 242 ~~~~~y 247 (378)
.-...|
T Consensus 80 h~~~d~ 85 (114)
T cd02986 80 HMKVDY 85 (114)
T ss_pred EEEEec
Confidence 333333
No 253
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.39 E-value=0.0018 Score=49.53 Aligned_cols=89 Identities=10% Similarity=0.060 Sum_probs=60.0
Q ss_pred cccCCCHHHHHHhhccC-CeEEEEEEcCCCCc---cHHHHHHHhc-cC---CceeEEEE-----ccHHHHhhcCCCCCCC
Q 017071 164 TYSITTTDEAERILTVE-SKLVLGFLHDLEGM---ESEELAAASK-LH---SDVNFYQT-----TSADVAEFFHIHPKSK 230 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~~-~~~~v~f~~~~~~~---~~~~~~~~a~-~~---~~~~f~~~-----~~~~~~~~~~i~~~~~ 230 (378)
+.++ +.+++++.+..+ .+++|.|+++||.+ ..+.|.+++. +. +.+.|+.+ .+.+++++|++..
T Consensus 3 v~~l-~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~--- 78 (114)
T cd02992 3 VIVL-DAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG--- 78 (114)
T ss_pred eEEC-CHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC---
Confidence 4455 456777776554 58999999999986 3455666663 32 34666644 2457899999986
Q ss_pred CCeEEEeecCCC---CccccCCC-CCHHHH
Q 017071 231 RPALIFLHLEAG---KATPFRHQ-FTRLAI 256 (378)
Q Consensus 231 ~P~i~~~~~~~~---~~~~y~g~-~~~~~l 256 (378)
+|++++|+++.. ....|+|. +..+++
T Consensus 79 ~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 79 YPTLRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred CCEEEEECCCCccCCCCCcccCCccCHHHH
Confidence 999999998742 23456665 454544
No 254
>PHA03050 glutaredoxin; Provisional
Probab=97.39 E-value=0.00098 Score=50.23 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=44.2
Q ss_pred HHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC---c----HHHHHHcCCCCCcEEEEEeCCe
Q 017071 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---E----KDLAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 66 ~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---~----~~~~~~~~v~~~Pt~~~~~~g~ 138 (378)
.++.+.+++ ++.|..+|||+|++....|++..-... .+-.+|+++ . ..+.+.-|.+.+|++++ +|+
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~ 78 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKT 78 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCE
Confidence 344555544 667999999999999998877633221 355556554 2 23555568889999844 664
Q ss_pred Ee
Q 017071 139 RQ 140 (378)
Q Consensus 139 ~~ 140 (378)
.+
T Consensus 79 ~i 80 (108)
T PHA03050 79 SI 80 (108)
T ss_pred EE
Confidence 33
No 255
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.37 E-value=0.00051 Score=48.68 Aligned_cols=55 Identities=7% Similarity=0.262 Sum_probs=40.2
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHH----HcCCCCCcEEEEEeCCeE
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNILAYPTLYLFVAGVR 139 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g~~ 139 (378)
++.|+.+||++|.+....+++. ++.+-.+|++.++...+ ..|..++|+++ -+|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~--i~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIF--IGDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 3568899999999999988753 46677777777755443 44788899973 36643
No 256
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.36 E-value=0.022 Score=55.86 Aligned_cols=170 Identities=14% Similarity=0.089 Sum_probs=113.8
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCe-EeeeeeCCCCHHH
Q 017071 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRDV 151 (378)
Q Consensus 73 ~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~g~~~~~~ 151 (378)
+.+.++.|.. .|..|.++...++++++.- +++.+..-+.+. ...|++.+..+|+ .-.+|.|...-.+
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence 3444545555 7999999999999998764 466665444222 2469998887764 3479999999999
Q ss_pred HHHHHHHHhc--CCcccCCCHHHHHHhhcc-CCeEEEEEEcCCCCccHH---HHHHHhccCCceeEEE---EccHHHHhh
Q 017071 152 ISAWVREKMT--LGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQ---TTSADVAEF 222 (378)
Q Consensus 152 l~~~i~~~~~--~~~~~i~~~~~~~~~~~~-~~~~~v~f~~~~~~~~~~---~~~~~a~~~~~~~f~~---~~~~~~~~~ 222 (378)
+..||...+. ..-..+ +.+..+.+.+- .+.-+-.|..+.|..... .+..++....++.... ...++++++
T Consensus 87 f~s~i~~i~~~~~~~~~l-~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~ 165 (515)
T TIGR03140 87 FTSLVLAILQVGGHGPKL-DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEA 165 (515)
T ss_pred HHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHh
Confidence 9999988653 333444 44544444433 345577788888887544 3344444445555443 467899999
Q ss_pred cCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhc
Q 017071 223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 223 ~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
|++.. .|++++- ....+.|..+.+++.+-+...
T Consensus 166 ~~v~~---VP~~~i~-----~~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 166 LGIQG---VPAVFLN-----GEEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred cCCcc---cCEEEEC-----CcEEEecCCCHHHHHHHHhhc
Confidence 99986 8999862 123577888888777777654
No 257
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.36 E-value=0.0015 Score=55.86 Aligned_cols=39 Identities=10% Similarity=0.257 Sum_probs=31.6
Q ss_pred CCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCcEEEEE
Q 017071 73 NRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMV 111 (378)
Q Consensus 73 ~~~~lv~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~v 111 (378)
+++.+|.|+.-.|+||..+.|.+ ..+.+.+.+++.+..+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~ 78 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKY 78 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEe
Confidence 56779999999999999999876 7788888766555543
No 258
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.30 E-value=0.003 Score=43.74 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=46.0
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHH---HHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHH
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD---LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (378)
++.|..+||++|.+....+++. ++.+-.+|++++.. +.+..|...+|.+ +-+|+.+ | ..+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i----g--g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI----G--GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE----e--CHHHHH
Confidence 5778999999999998888742 56677778776542 3334588899997 4467432 3 256666
Q ss_pred HHH
Q 017071 154 AWV 156 (378)
Q Consensus 154 ~~i 156 (378)
+|+
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 664
No 259
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.28 E-value=0.0012 Score=46.18 Aligned_cols=55 Identities=11% Similarity=0.202 Sum_probs=40.6
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHH----HcCCC-CCcEEEEEeCCeE
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNIL-AYPTLYLFVAGVR 139 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~v~-~~Pt~~~~~~g~~ 139 (378)
++.|..+||++|.+....|++. ++.+-.+|++.+++..+ ..|.. ++|+++ -+|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEE
Confidence 5678999999999999888752 57788888887755443 35666 899874 46643
No 260
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.27 E-value=0.0023 Score=51.38 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=57.5
Q ss_pred cccCCCHHHHHHhhcc--CCeEEEEEEcCCCCcc---HHHHHHHh-ccC-CceeEEEE---ccHHHHhhcCCCC---CCC
Q 017071 164 TYSITTTDEAERILTV--ESKLVLGFLHDLEGME---SEELAAAS-KLH-SDVNFYQT---TSADVAEFFHIHP---KSK 230 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~--~~~~~v~f~~~~~~~~---~~~~~~~a-~~~-~~~~f~~~---~~~~~~~~~~i~~---~~~ 230 (378)
+.++ +.+++++.+.. ..+++|.|+++||.+. .+.+.+++ .+. .++.|+.+ .+++++++|++.. ..+
T Consensus 30 v~~l-~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~ 108 (152)
T cd02962 30 IKYF-TPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQ 108 (152)
T ss_pred cEEc-CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCC
Confidence 4444 45778887744 4588999999999874 45677776 343 34777765 5788999999963 123
Q ss_pred CCeEEEeecCCCCccccCC
Q 017071 231 RPALIFLHLEAGKATPFRH 249 (378)
Q Consensus 231 ~P~i~~~~~~~~~~~~y~g 249 (378)
+||+++|+.+. ....+.|
T Consensus 109 ~PT~ilf~~Gk-~v~r~~G 126 (152)
T cd02962 109 LPTIILFQGGK-EVARRPY 126 (152)
T ss_pred CCEEEEEECCE-EEEEEec
Confidence 79999999764 3334443
No 261
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.25 E-value=0.0049 Score=47.87 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=65.3
Q ss_pred CHHHHHHhhccCCeEEEEEEcCCCC-c---c-HHHHHHHh-ccC-CceeEEEE---ccHHHHhhcCCCCCCCCCeEEEee
Q 017071 169 TTDEAERILTVESKLVLGFLHDLEG-M---E-SEELAAAS-KLH-SDVNFYQT---TSADVAEFFHIHPKSKRPALIFLH 238 (378)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~~-~---~-~~~~~~~a-~~~-~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~ 238 (378)
+...++.++......++.|-.+... + . .-.+.+++ ++. .++.|+.+ .+++++.+||+.. +||+++|+
T Consensus 23 ~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~s---iPTLl~Fk 99 (132)
T PRK11509 23 SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFR---FPATLVFT 99 (132)
T ss_pred ccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCcc---CCEEEEEE
Confidence 3477888888887777655433221 1 2 22344566 444 34778765 7889999999997 99999999
Q ss_pred cCCCCccccCCCCCHHHHHHHHHhcC
Q 017071 239 LEAGKATPFRHQFTRLAIANFVTHTK 264 (378)
Q Consensus 239 ~~~~~~~~y~g~~~~~~l~~fi~~~~ 264 (378)
++. ..-...|-.+.+++.+||....
T Consensus 100 dGk-~v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 100 GGN-YRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred CCE-EEEEEeCcCCHHHHHHHHHHHh
Confidence 884 4456778889999999998754
No 262
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.24 E-value=0.00091 Score=49.62 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=40.1
Q ss_pred HhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHH-------HHHHcCCCCCcEEEEEeCCeE
Q 017071 69 FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD-------LAKEYNILAYPTLYLFVAGVR 139 (378)
Q Consensus 69 ~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-------~~~~~~v~~~Pt~~~~~~g~~ 139 (378)
.+.+++ ++.|..+|||+|++....|.+. ++.+-.+|++++++ +.+..|...+|.+ |-+|+.
T Consensus 4 ~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~ 71 (99)
T TIGR02189 4 MVSEKA--VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKL 71 (99)
T ss_pred hhccCC--EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEE
Confidence 344444 5668999999999999877654 35455666665432 3333467889997 446643
No 263
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=97.21 E-value=0.012 Score=50.06 Aligned_cols=106 Identities=21% Similarity=0.254 Sum_probs=75.1
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEecCCCh-hHHhhHHHHHHHHHHhc-C---Cc--EEEEEeCcCc------------
Q 017071 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLK-G---EA--DLVMVDAYLE------------ 116 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~-~C~~~~p~~~~~~~~~~-~---~~--~~~~vd~~~~------------ 116 (378)
..+.+-+++.+.....++++++|.|.=+.|+ -|-.+...+.++.+++. . ++ .++.||=+.+
T Consensus 50 f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~ 129 (207)
T COG1999 50 FELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELN 129 (207)
T ss_pred eeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhccc
Confidence 3555566666665555899999999988896 89999999998888877 3 44 4444443221
Q ss_pred ---------------HHHHHHcCCCC---------------CcEEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHhc
Q 017071 117 ---------------KDLAKEYNILA---------------YPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 117 ---------------~~~~~~~~v~~---------------~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (378)
.+++++|+|.. ...+++++ +|+....|.+..+++.+.+.+++.+.
T Consensus 130 ~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 130 FDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred CCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 34666776652 22456666 89888888887778999888887653
No 264
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.19 E-value=0.0017 Score=45.16 Aligned_cols=54 Identities=7% Similarity=0.091 Sum_probs=41.4
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHH----HHHHcCCCCCcEEEEEeCCe
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~ 138 (378)
++.|..+||++|++....|++. ++.+-.+|+++++. +.+..+-..+|++++ +|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 5678999999999999888862 67788889887664 455557788999843 664
No 265
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.14 E-value=0.011 Score=44.21 Aligned_cols=93 Identities=9% Similarity=0.135 Sum_probs=69.9
Q ss_pred Ec-ChhcHHHHhc-CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeC-
Q 017071 60 SL-NGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA- 136 (378)
Q Consensus 60 ~l-~~~~~~~~~~-~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~- 136 (378)
.+ +.++++..+. .+..++|-|+..--. .....|.++|+.+.+.+.|+... +.++.+++++. .|+++++++
T Consensus 4 ~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~ 76 (102)
T cd03066 4 IINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPF 76 (102)
T ss_pred EcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCC
Confidence 44 4456888887 778888888876433 46678899999997788887655 55778888876 699999975
Q ss_pred CeEeeee-eCCCCHHHHHHHHHHH
Q 017071 137 GVRQFQF-FGERTRDVISAWVREK 159 (378)
Q Consensus 137 g~~~~~~-~g~~~~~~l~~~i~~~ 159 (378)
......| .|..+.+.|.+||...
T Consensus 77 ~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 77 MEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCcccCCCCCCHHHHHHHHHHh
Confidence 4444568 7888999999999753
No 266
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.12 E-value=0.0016 Score=47.68 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=44.3
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeC--cC------------------------------cHHHHHHcC
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--YL------------------------------EKDLAKEYN 124 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~--~~------------------------------~~~~~~~~~ 124 (378)
++.|+.+.|++|..+.+.+.++.....+++.+..+.. .. +...++++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999866666555554432 21 124567889
Q ss_pred CCCCcEEEEEe
Q 017071 125 ILAYPTLYLFV 135 (378)
Q Consensus 125 v~~~Pt~~~~~ 135 (378)
+.|+||+++-+
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999998865
No 267
>PTZ00062 glutaredoxin; Provisional
Probab=97.11 E-value=0.0042 Score=52.45 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=66.6
Q ss_pred CCCHHHHHHhhccC-CeEEEEEEcCCCCc---cHHHHHHHhccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecCCC
Q 017071 167 ITTTDEAERILTVE-SKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAG 242 (378)
Q Consensus 167 i~~~~~~~~~~~~~-~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~ 242 (378)
..+.+++.++++++ ...++.|.++||.+ ..+.+.++++...++.|+.+... |++.. .|++++|+++.
T Consensus 3 ~~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----~~V~~---vPtfv~~~~g~- 73 (204)
T PTZ00062 3 FIKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----DANNE---YGVFEFYQNSQ- 73 (204)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----cCccc---ceEEEEEECCE-
Confidence 34678888888765 67788888999987 45567777766688999988644 99987 99999999874
Q ss_pred CccccCCCCCHHHHHHHHHhcCC
Q 017071 243 KATPFRHQFTRLAIANFVTHTKH 265 (378)
Q Consensus 243 ~~~~y~g~~~~~~l~~fi~~~~~ 265 (378)
.--.+.|. +...|.++++.+.-
T Consensus 74 ~i~r~~G~-~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 74 LINSLEGC-NTSTLVSFIRGWAQ 95 (204)
T ss_pred EEeeeeCC-CHHHHHHHHHHHcC
Confidence 44466665 56777777776543
No 268
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.11 E-value=0.0048 Score=50.00 Aligned_cols=73 Identities=14% Similarity=0.203 Sum_probs=48.8
Q ss_pred CCCc-EEEEEecCCChhHHhh-HHHHHHHHHHhcC-Cc-EEEEEeCc-----------------------CcHHHHHHcC
Q 017071 72 KNRN-VMVMFYANWCYWSKKL-APEFAAAAKMLKG-EA-DLVMVDAY-----------------------LEKDLAKEYN 124 (378)
Q Consensus 72 ~~~~-~lv~F~a~wC~~C~~~-~p~~~~~~~~~~~-~~-~~~~vd~~-----------------------~~~~~~~~~~ 124 (378)
.+++ +|+.|.+.||+.|..+ .+.|.+...++.. ++ .++.|.++ .+.++++.||
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~yg 107 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALG 107 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcC
Confidence 3444 4555568899999999 9999999988875 56 47777654 2345677777
Q ss_pred CC------C-----CcEEEEEeCCeEeeeee
Q 017071 125 IL------A-----YPTLYLFVAGVRQFQFF 144 (378)
Q Consensus 125 v~------~-----~Pt~~~~~~g~~~~~~~ 144 (378)
+. + ..+++++++|++...+.
T Consensus 108 v~~~~~~~~~~~~~~R~~fiId~g~I~~~~~ 138 (155)
T cd03013 108 LTLDLSAAGGGIRSKRYALIVDDGKVKYLFV 138 (155)
T ss_pred CCccccccCCcceeeeEEEEECCCEEEEEEE
Confidence 62 1 24556666776555444
No 269
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0035 Score=53.17 Aligned_cols=96 Identities=13% Similarity=0.164 Sum_probs=68.8
Q ss_pred CcccCCCHHHHHHhhccC--CeEEEEEEcCCCCc---cHHHHHHHhccCCceeEEEEc---cHHHHhhcCCCCCCCCCeE
Q 017071 163 GTYSITTTDEAERILTVE--SKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTT---SADVAEFFHIHPKSKRPAL 234 (378)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~--~~~~v~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~---~~~~~~~~~i~~~~~~P~i 234 (378)
+|..+.+..+++.-+... +.++|.|+++||+| ..+.|..++..+....|..+. -...+..+|++. .||.
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~a---mPTF 78 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNA---MPTF 78 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCccc---CceE
Confidence 456677777777666554 48899999999998 467799988666777777663 345667889986 8999
Q ss_pred EEeecCCCCccccCCCCCHHHHHHHHHhc
Q 017071 235 IFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 235 ~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
++|+.+. +-..+.|. +...|.+-+.++
T Consensus 79 iff~ng~-kid~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 79 IFFRNGV-KIDQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred EEEecCe-EeeeecCC-CHHHHHHHHHHH
Confidence 9999864 55566665 444555555443
No 270
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.09 E-value=0.0033 Score=46.45 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=43.4
Q ss_pred cHHHHhcCCCcEEEEEe----cCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHH----HHcCCCCCcEEEEEeC
Q 017071 65 NFSEFMGKNRNVMVMFY----ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFVA 136 (378)
Q Consensus 65 ~~~~~~~~~~~~lv~F~----a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~ 136 (378)
..++.+.+++ ++|+-. +|||++|++....|.+. ++.+..+|++++++.. +..|-..+|.++ -+
T Consensus 4 ~v~~~i~~~~-Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~ 74 (97)
T TIGR00365 4 RIKEQIKENP-VVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VK 74 (97)
T ss_pred HHHHHhccCC-EEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--EC
Confidence 3455665544 444333 39999999999888764 5667788887766543 345677889875 36
Q ss_pred Ce
Q 017071 137 GV 138 (378)
Q Consensus 137 g~ 138 (378)
|+
T Consensus 75 g~ 76 (97)
T TIGR00365 75 GE 76 (97)
T ss_pred CE
Confidence 63
No 271
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.00 E-value=0.0071 Score=46.32 Aligned_cols=71 Identities=11% Similarity=0.036 Sum_probs=52.5
Q ss_pred CCCHHHHHHhhcc--CCeEEEEEEc-------CCCCccH---HHHHHHh-ccCCceeEEEEc----------cHHHHhhc
Q 017071 167 ITTTDEAERILTV--ESKLVLGFLH-------DLEGMES---EELAAAS-KLHSDVNFYQTT----------SADVAEFF 223 (378)
Q Consensus 167 i~~~~~~~~~~~~--~~~~~v~f~~-------~~~~~~~---~~~~~~a-~~~~~~~f~~~~----------~~~~~~~~ 223 (378)
+.+.+++.+.+.. +++++|.|++ +||++.. +.+.+++ .+.+++.|..+. +.+++.++
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 4567788888776 5689999999 9999743 4566666 444467777542 35888999
Q ss_pred CCC-CCCCCCeEEEeecC
Q 017071 224 HIH-PKSKRPALIFLHLE 240 (378)
Q Consensus 224 ~i~-~~~~~P~i~~~~~~ 240 (378)
++. . .||+++|+.+
T Consensus 86 ~I~~~---iPT~~~~~~~ 100 (119)
T cd02952 86 KLTTG---VPTLLRWKTP 100 (119)
T ss_pred CcccC---CCEEEEEcCC
Confidence 997 6 8999999654
No 272
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.92 E-value=0.015 Score=43.51 Aligned_cols=90 Identities=23% Similarity=0.374 Sum_probs=67.4
Q ss_pred ChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeC-----
Q 017071 62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA----- 136 (378)
Q Consensus 62 ~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~----- 136 (378)
+.++++..+...++++|-|+..--. .....|.++|+.+++.+.|+... +..+.+++++ .|++++|+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~ 78 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSN 78 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhc
Confidence 3455777777788888888876433 56788899999997788887665 4577889998 688888831
Q ss_pred --CeEeeeeeCCCCHHHHHHHHHHH
Q 017071 137 --GVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 137 --g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
......|.|..+.+.|.+||...
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHhh
Confidence 12234689998999999999753
No 273
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.85 E-value=0.017 Score=49.29 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=51.8
Q ss_pred CCCcccCCCcEEcChhc---HHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEe
Q 017071 49 TWPLLYAKDVVSLNGKN---FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112 (378)
Q Consensus 49 ~~~~~~~~~v~~l~~~~---~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd 112 (378)
....+++..++++++++ +-+....++|.+|+|-+-.||+=..-.+.|+++++++.+.+.|..|-
T Consensus 75 ~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VY 141 (237)
T PF00837_consen 75 LGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVY 141 (237)
T ss_pred CCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 34456677999999988 33455789999999999999999999999999999999855555543
No 274
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.80 E-value=0.0033 Score=55.17 Aligned_cols=89 Identities=22% Similarity=0.440 Sum_probs=71.0
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEe-CcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHH
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd-~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 150 (378)
+..++-+.||++||+..+..+|.++-....+.. +....|+ ....+.+..+||+.+.|++.+...- -..+|.|.++..
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-~~~~~~~~r~l~ 152 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-CPASYRGERDLA 152 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeeccc-cchhhcccccHH
Confidence 367899999999999999999999988887763 3333322 2234677889999999999888755 678999999999
Q ss_pred HHHHHHHHHhcC
Q 017071 151 VISAWVREKMTL 162 (378)
Q Consensus 151 ~l~~~i~~~~~~ 162 (378)
.|.+|..+.+.-
T Consensus 153 sLv~fy~~i~~~ 164 (319)
T KOG2640|consen 153 SLVNFYTEITPM 164 (319)
T ss_pred HHHHHHHhhccc
Confidence 999999888753
No 275
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.028 Score=44.22 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=73.2
Q ss_pred CCCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCc-----------HHHHH-
Q 017071 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-----------KDLAK- 121 (378)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~-----------~~~~~- 121 (378)
+..+.+++++.+.-.-.+++++||-=.|+-|+.-- ....++.|.++|++ ++.++..-|++- .++|+
T Consensus 7 d~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~ 85 (162)
T COG0386 7 DFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQL 85 (162)
T ss_pred cceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHh
Confidence 34566777777765557899999999999999754 44567778888887 888888888642 22343
Q ss_pred HcCCC-----------------------CCc------------EEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHh
Q 017071 122 EYNIL-----------------------AYP------------TLYLFV-AGVRQFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 122 ~~~v~-----------------------~~P------------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~ 160 (378)
.|||+ ..| |=++++ +|+++.||.-...++++...|++.+
T Consensus 86 ~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 86 NYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred ccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 34432 111 345555 8888888888888888887777665
No 276
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.71 E-value=0.0081 Score=43.68 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=35.6
Q ss_pred CCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHH----HHcCCCCCcEEEEEeCCe
Q 017071 83 NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 83 ~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~ 138 (378)
|||++|++....|.+. ++.+..+|+++++++. +..|-..+|.++ -+|+
T Consensus 21 ~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 7999999998888765 4667788887776543 345778899974 4674
No 277
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.69 E-value=0.014 Score=57.79 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=67.4
Q ss_pred cccCCCHHHHHHhhc----cCCeEEEEEEcCCCCccHHH----H--HHHhccCCceeEEEE---c----cHHHHhhcCCC
Q 017071 164 TYSITTTDEAERILT----VESKLVLGFLHDLEGMESEE----L--AAASKLHSDVNFYQT---T----SADVAEFFHIH 226 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~----~~~~~~v~f~~~~~~~~~~~----~--~~~a~~~~~~~f~~~---~----~~~~~~~~~i~ 226 (378)
...+++.+++++.++ .+++++|.|+++||.+.... + .++.+...++.+..+ . +.++.++|++.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 445667777777664 35789999999999875432 2 223322234555432 1 35788999998
Q ss_pred CCCCCCeEEEeecCCCC--ccccCCCCCHHHHHHHHHhc
Q 017071 227 PKSKRPALIFLHLEAGK--ATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 227 ~~~~~P~i~~~~~~~~~--~~~y~g~~~~~~l~~fi~~~ 263 (378)
. .|++++|+++.+. ...+.|..+.+++.+++++.
T Consensus 534 g---~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 534 G---LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred C---CCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 6 9999999854433 35778999999999999864
No 278
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0069 Score=42.92 Aligned_cols=51 Identities=12% Similarity=0.260 Sum_probs=37.6
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH-----HHHHHc-CCCCCcEEEE
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEY-NILAYPTLYL 133 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~-~v~~~Pt~~~ 133 (378)
++.|..+|||+|++....|.+ .++.+..++.+.+. +..++- |.+.+|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 567889999999998888873 26777777776554 334444 7899999866
No 279
>PRK10638 glutaredoxin 3; Provisional
Probab=96.68 E-value=0.0071 Score=43.22 Aligned_cols=56 Identities=5% Similarity=0.123 Sum_probs=40.7
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHH----HHHcCCCCCcEEEEEeCCeEe
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGVRQ 140 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 140 (378)
++.|..+||++|++....+++. ++.+..+|++++++. .+..|...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 5567889999999999888863 566777888776543 44457788998743 67433
No 280
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=96.60 E-value=0.012 Score=48.74 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=43.6
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEecCCC-hhHHhhHHHHHHHHHHhcC---CcEEEEEeCcC
Q 017071 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWC-YWSKKLAPEFAAAAKMLKG---EADLVMVDAYL 115 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC-~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~ 115 (378)
..+.+-+++.+.....++++++|.|.-+.| ..|-.....+.++.+.+.. ++.++.|.+|-
T Consensus 35 f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 35 FTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp -EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred cEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 455666666666444589999999999999 4899998888888777654 67777777653
No 281
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.60 E-value=0.0076 Score=49.93 Aligned_cols=31 Identities=16% Similarity=0.434 Sum_probs=24.1
Q ss_pred EEecCCChhHHhhHHHHHHHHHHhcCCcEEE
Q 017071 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLV 109 (378)
Q Consensus 79 ~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~ 109 (378)
+|.-|+|+.|-...|.+.++..+++..+.+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~ 32 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFR 32 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEE
Confidence 5889999999999999999999998854433
No 282
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.52 E-value=0.016 Score=40.54 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=49.8
Q ss_pred EEEEcCCCCcc---HHHHHHHh-ccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCC-CHHHHHHH
Q 017071 185 LGFLHDLEGME---SEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF-TRLAIANF 259 (378)
Q Consensus 185 v~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~-~~~~l~~f 259 (378)
|.||++||++. .+.+.+++ ++..++.|..+.+.+.+.++++.. .|++++ ++ ... +.|.. +.+.|.++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~---vPti~i--~G--~~~-~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVTA---TPGVAV--DG--ELV-IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCc---CCEEEE--CC--EEE-EEeccCCHHHHHHH
Confidence 66889999974 44456655 566678888888778888999986 899998 32 333 77753 55788877
Q ss_pred HH
Q 017071 260 VT 261 (378)
Q Consensus 260 i~ 261 (378)
++
T Consensus 75 l~ 76 (76)
T TIGR00412 75 LK 76 (76)
T ss_pred hC
Confidence 63
No 283
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.45 E-value=0.03 Score=39.55 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCccH---HHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHH
Q 017071 183 LVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLA 255 (378)
Q Consensus 183 ~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~ 255 (378)
-+..|+.+||.+.. +.+..++ .+...+.+..+ .+.++++++++.. .|++++ .+ . ..+.|..+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~---vPt~~~--~g--~-~~~~G~~~~~~ 73 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMA---VPAIVI--NG--D-VEFIGAPTKEE 73 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCcc---CCEEEE--CC--E-EEEecCCCHHH
Confidence 35679999998754 4444544 44455665544 6788999999986 899986 22 2 37788888999
Q ss_pred HHHHHHh
Q 017071 256 IANFVTH 262 (378)
Q Consensus 256 l~~fi~~ 262 (378)
+.++++.
T Consensus 74 l~~~l~~ 80 (82)
T TIGR00411 74 LVEAIKK 80 (82)
T ss_pred HHHHHHh
Confidence 9999875
No 284
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.027 Score=55.11 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=67.2
Q ss_pred EcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCcEEEEEeCcCcHHHHHHcC--------CCCC
Q 017071 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYN--------ILAY 128 (378)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~~--------v~~~ 128 (378)
....+.|.++-..++|++|-.-.+||+.|.-|..+= .++|+.++..++-++||-++-|++-+.|. --|+
T Consensus 30 pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 30 PWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred ccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence 457888999999999999999999999999998753 56788888899999999998877665552 4579
Q ss_pred cEEEEEe-CCeEe
Q 017071 129 PTLYLFV-AGVRQ 140 (378)
Q Consensus 129 Pt~~~~~-~g~~~ 140 (378)
|-.+++. +|+..
T Consensus 110 PLtVfLTPd~kPF 122 (667)
T COG1331 110 PLTVFLTPDGKPF 122 (667)
T ss_pred ceeEEECCCCcee
Confidence 9888887 88654
No 285
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.21 E-value=0.04 Score=39.94 Aligned_cols=99 Identities=13% Similarity=0.216 Sum_probs=68.3
Q ss_pred cccCCCHHHHHHhhccCCeEEEEEEcCCCC--ccHHHHHHHh-ccCCceeEEEE-----ccHHHHhhcCCCCCCC-CC-e
Q 017071 164 TYSITTTDEAERILTVESKLVLGFLHDLEG--MESEELAAAS-KLHSDVNFYQT-----TSADVAEFFHIHPKSK-RP-A 233 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~--~~~~~~~~~a-~~~~~~~f~~~-----~~~~~~~~~~i~~~~~-~P-~ 233 (378)
+..|.+..++.++++..+.++|.|..+..+ .....|..+| ..++.-....+ ....+|+++.++...+ -| .
T Consensus 3 ie~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~ 82 (112)
T cd03067 3 IEDISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVE 82 (112)
T ss_pred cccccchHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcch
Confidence 456788899999999988888888877544 3556788888 56666555433 3678999999982111 13 2
Q ss_pred EEEeecCCCCccccCCCCCHHHHHHHHHhc
Q 017071 234 LIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 234 i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
+.-|++++ -...|+-..+..++.+|+++.
T Consensus 83 LkHYKdG~-fHkdYdR~~t~kSmv~FlrDP 111 (112)
T cd03067 83 LKHYKDGD-FHTEYNRQLTFKSMVAFLRDP 111 (112)
T ss_pred hhcccCCC-ccccccchhhHHHHHHHhhCC
Confidence 33344443 445677778899999999763
No 286
>PRK10824 glutaredoxin-4; Provisional
Probab=96.20 E-value=0.022 Score=43.24 Aligned_cols=65 Identities=18% Similarity=0.367 Sum_probs=40.3
Q ss_pred cHHHHhcCCCcEEEEEec----CCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHH----cCCCCCcEEEEEeC
Q 017071 65 NFSEFMGKNRNVMVMFYA----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE----YNILAYPTLYLFVA 136 (378)
Q Consensus 65 ~~~~~~~~~~~~lv~F~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~Pt~~~~~~ 136 (378)
..++.+.+++ |+|.--. |||++|++....|.++ ++.+..+|.+++.++... -|-..+|.+++ +
T Consensus 7 ~v~~~I~~~~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~ 77 (115)
T PRK10824 7 KIQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQALSAC------GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--D 77 (115)
T ss_pred HHHHHHhcCC-EEEEECCCCCCCCCchHHHHHHHHHHc------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--C
Confidence 3456665544 4443322 6999999999888775 344555677666554443 35566777655 6
Q ss_pred Ce
Q 017071 137 GV 138 (378)
Q Consensus 137 g~ 138 (378)
|+
T Consensus 78 G~ 79 (115)
T PRK10824 78 GE 79 (115)
T ss_pred CE
Confidence 63
No 287
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=96.14 E-value=0.0072 Score=44.06 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=42.8
Q ss_pred HhhhcCcchhhhhhHhhcCCCCCCCcEEEEEcC-CCccccCCC-CCCHHHHHHHHHHHhc
Q 017071 290 VYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLNG-ELTLSSIKSFGEEFLE 347 (378)
Q Consensus 290 ~~~d~~~~~~~~~l~~~~gi~~~~~p~i~i~~~-~~~~y~~~~-~~~~~~i~~Fi~~~~~ 347 (378)
+++..+++- ...+.+..+++. ..|.++|.|. +.++|.++. ++|.+++.+|+.+|++
T Consensus 59 f~~a~ede~-tdsLRDf~nL~d-~~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~ylA 116 (116)
T cd03071 59 FFVAGEDDM-TDSLRDYTNLPE-AAPLLTILDMSARAKYVMDVEEITPAIVEAFVSDFLA 116 (116)
T ss_pred eeeeccchH-HHHHHHhcCCCc-cCceEEEEeccccceEeCchHhcCHHHHHHHHHHhhC
Confidence 334444433 556777888854 4788889988 888999875 8999999999999964
No 288
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.02 E-value=0.021 Score=47.24 Aligned_cols=102 Identities=17% Similarity=0.272 Sum_probs=77.9
Q ss_pred CCcEEcC-hhcHHHHhcCC---CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEE
Q 017071 56 KDVVSLN-GKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131 (378)
Q Consensus 56 ~~v~~l~-~~~~~~~~~~~---~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 131 (378)
..|++++ ++.|-..+.+. -.++|..|-+.-.-|-.+...+.=||.+|+ .+.|.++-.. +-...++|...++||+
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss-~~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSS-NTGASDRFSLNVLPTL 215 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeec-cccchhhhcccCCceE
Confidence 3567764 56777777433 467889999999999999999999999998 7888888744 3466789999999999
Q ss_pred EEEeCCeEeeeee------C-CCCHHHHHHHHHHH
Q 017071 132 YLFVAGVRQFQFF------G-ERTRDVISAWVREK 159 (378)
Q Consensus 132 ~~~~~g~~~~~~~------g-~~~~~~l~~~i~~~ 159 (378)
.+|++|+.+..|. | ......+.+|++.+
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999997655443 2 34556666666654
No 289
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.98 E-value=0.027 Score=46.21 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=66.2
Q ss_pred CCcEEcChhcHHHHh---cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEE
Q 017071 56 KDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~---~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (378)
..|..+++.++-+.+ .++-.|+|..|...-+-|+-+...++.++.+|. .+.|+++-.+.. ...|-=...||++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nlPTl~ 166 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNLPTLL 166 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCCCeEE
Confidence 578889999888655 345678999999999999999999999999998 688887753321 1124445689999
Q ss_pred EEeCCeEeeeeeC
Q 017071 133 LFVAGVRQFQFFG 145 (378)
Q Consensus 133 ~~~~g~~~~~~~g 145 (378)
+|..|.....+.|
T Consensus 167 VY~~G~lk~q~ig 179 (240)
T KOG3170|consen 167 VYHHGALKKQMIG 179 (240)
T ss_pred EeecchHHhheeh
Confidence 9998866666654
No 290
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=95.83 E-value=0.0077 Score=43.98 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=44.9
Q ss_pred HHHHhhhcCcchhhh-hhHhhcCCCCCCCcEEEEEcC---CCccccCCCC---CCHHHHHHHHHHHh
Q 017071 287 LLHVYVEMNSEGVGR-RVSQEFGVSGNAPRVIAYSAR---DAKKYVLNGE---LTLSSIKSFGEEFL 346 (378)
Q Consensus 287 l~f~~~d~~~~~~~~-~l~~~~gi~~~~~p~i~i~~~---~~~~y~~~~~---~~~~~i~~Fi~~~~ 346 (378)
+.|+|+|.+....-. .-.+.|||+-+ .|+|.+.|. .+.++.++++ -+.++++.||++++
T Consensus 55 LsiIWIDPD~FPllv~yWektF~IDl~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 55 LSIIWIDPDDFPLLVPYWEKTFGIDLF-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ceEEEECCccCchhhHHHHhhcCcccC-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 378888888764322 33578899875 689999988 5678888653 78899999999975
No 291
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.71 E-value=0.019 Score=54.79 Aligned_cols=75 Identities=11% Similarity=0.142 Sum_probs=53.1
Q ss_pred CcccCCCHHHHHHhhccC-CeEEEEEEcCCCCc---cHHHHHHHh----ccCCceeEEEE-----ccHHHHhhcCCCCCC
Q 017071 163 GTYSITTTDEAERILTVE-SKLVLGFLHDLEGM---ESEELAAAS----KLHSDVNFYQT-----TSADVAEFFHIHPKS 229 (378)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~-~~~~v~f~~~~~~~---~~~~~~~~a----~~~~~~~f~~~-----~~~~~~~~~~i~~~~ 229 (378)
++.++ +.+.+...+... ...+|-||.+||++ ..+.|++.| ..+.-+.++++ .+..+|+.|+|+.
T Consensus 40 ~ii~L-d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~-- 116 (606)
T KOG1731|consen 40 PIIEL-DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG-- 116 (606)
T ss_pred CeEEe-ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC--
Confidence 44454 456666555444 47788999999996 345666655 34455555554 6788999999997
Q ss_pred CCCeEEEeecCC
Q 017071 230 KRPALIFLHLEA 241 (378)
Q Consensus 230 ~~P~i~~~~~~~ 241 (378)
+|++.+|.+..
T Consensus 117 -~Ptlryf~~~~ 127 (606)
T KOG1731|consen 117 -YPTLRYFPPDS 127 (606)
T ss_pred -CceeeecCCcc
Confidence 99999998763
No 292
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.57 E-value=0.043 Score=51.95 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=40.6
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHH---H---------cCCCCCcEEEEEeCCe
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK---E---------YNILAYPTLYLFVAGV 138 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~---------~~v~~~Pt~~~~~~g~ 138 (378)
++.|..+|||+|++....+.+. ++.+-.+|+++++...+ + .|.+++|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6779999999999988877763 67888899887763222 2 36788999866 554
No 293
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=95.53 E-value=0.09 Score=46.77 Aligned_cols=81 Identities=11% Similarity=-0.001 Sum_probs=54.8
Q ss_pred CCeEEEEEEcCCCCccH---HHHHHHhccCC-ceeEEEEc------------cHHHHhhcCCCCCCCCCeEEEeecCCCC
Q 017071 180 ESKLVLGFLHDLEGMES---EELAAASKLHS-DVNFYQTT------------SADVAEFFHIHPKSKRPALIFLHLEAGK 243 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~~~---~~~~~~a~~~~-~~~f~~~~------------~~~~~~~~~i~~~~~~P~i~~~~~~~~~ 243 (378)
.+..+|.|+++||.+.. ..+..++...+ .+....+. +..+++++|+.. .|++++++++++.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~---vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT---VPAVFLADPDPNQ 242 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCc---CCeEEEEECCCCE
Confidence 56788999999998754 34455553222 22222221 346889999986 9999999984333
Q ss_pred c-cccCCCCCHHHHHHHHHhc
Q 017071 244 A-TPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 244 ~-~~y~g~~~~~~l~~fi~~~ 263 (378)
. ....|.++.++|.+.|..-
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHH
Confidence 3 3445888999999888753
No 294
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.11 Score=38.65 Aligned_cols=65 Identities=15% Similarity=0.325 Sum_probs=42.3
Q ss_pred HHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH-HHHH----HcCCCCCcEEEEEeCCe
Q 017071 66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLAK----EYNILAYPTLYLFVAGV 138 (378)
Q Consensus 66 ~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-~~~~----~~~v~~~Pt~~~~~~g~ 138 (378)
+++++.++. +|.|..+||+.|......|.. +.....++.+|-+++. ++-+ .-+-+.+|.+++ +|+
T Consensus 7 v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk 76 (104)
T KOG1752|consen 7 VRKMISENP--VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK 76 (104)
T ss_pred HHHHhhcCC--EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence 455554444 455899999999997777776 4436677777766554 3332 234567898765 664
No 295
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.36 E-value=0.11 Score=45.86 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=61.1
Q ss_pred CcccCCCHHHHHHhhcc---CCeEEEEEEcCCC---CccHHHHHHHhccCCceeEEEEccHH--HHhhcCCCCCCCCCeE
Q 017071 163 GTYSITTTDEAERILTV---ESKLVLGFLHDLE---GMESEELAAASKLHSDVNFYQTTSAD--VAEFFHIHPKSKRPAL 234 (378)
Q Consensus 163 ~~~~i~~~~~~~~~~~~---~~~~~v~f~~~~~---~~~~~~~~~~a~~~~~~~f~~~~~~~--~~~~~~i~~~~~~P~i 234 (378)
.+.+|.+.+.+-+.+.. ...+||-||.+.. ......+..+|..+..++|..+.... +..+|.... .|+|
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~---LPtl 202 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKN---LPTL 202 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC----SEE
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccC---CCEE
Confidence 45677776766666654 2345666776643 34556677888888999998764433 677888876 8999
Q ss_pred EEeecCCC--Ccccc----CCCCCHHHHHHHHHhcC
Q 017071 235 IFLHLEAG--KATPF----RHQFTRLAIANFVTHTK 264 (378)
Q Consensus 235 ~~~~~~~~--~~~~y----~g~~~~~~l~~fi~~~~ 264 (378)
++|+.++- ..+.+ ..+++..+|..|+.++.
T Consensus 203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 99998741 22222 23478899999999874
No 296
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.16 E-value=0.053 Score=40.20 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=48.2
Q ss_pred cCCCHHHHHHhhcc--CCeEEEEEEcCCCCc---cHHHHHHHhcc-CCceeEEEE-------ccHHHHhhcCCCCCCCCC
Q 017071 166 SITTTDEAERILTV--ESKLVLGFLHDLEGM---ESEELAAASKL-HSDVNFYQT-------TSADVAEFFHIHPKSKRP 232 (378)
Q Consensus 166 ~i~~~~~~~~~~~~--~~~~~v~f~~~~~~~---~~~~~~~~a~~-~~~~~f~~~-------~~~~~~~~~~i~~~~~~P 232 (378)
.|++.++++++++. .++++|+=....|+- .++.|...... .+++.++.. -+..++++||+.. ..|
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H--eSP 80 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH--ESP 80 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------SS
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc--CCC
Confidence 57889999999987 566665444566864 44455554432 233666643 3567899999987 369
Q ss_pred eEEEeecCCCCccccCCCCCHHHH
Q 017071 233 ALIFLHLEAGKATPFRHQFTRLAI 256 (378)
Q Consensus 233 ~i~~~~~~~~~~~~y~g~~~~~~l 256 (378)
.+++++++.-....=.+.++.+.|
T Consensus 81 Q~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 81 QVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEETTEEEEEEEGGG-SHHHH
T ss_pred cEEEEECCEEEEECccccCCHHhc
Confidence 999999874222222344566555
No 297
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.09 E-value=0.16 Score=41.73 Aligned_cols=46 Identities=9% Similarity=0.273 Sum_probs=36.6
Q ss_pred ccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhc
Q 017071 215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 215 ~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
.+..+.+.|++.. .|+++++.+++.....+.|..+.+++.+++..-
T Consensus 126 ~~~~~~~~~~v~~---~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 126 KGRQVIDAYGVGP---LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CcchHHHHcCCCC---cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 3467788999986 899999987665555778999999999998753
No 298
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=95.04 E-value=0.08 Score=39.98 Aligned_cols=79 Identities=10% Similarity=0.151 Sum_probs=47.4
Q ss_pred cCCeEEEEEEcCCCCccHHHHHH------Hh-ccCCceeEEEE--c---------------------cHHHHhhcCCCCC
Q 017071 179 VESKLVLGFLHDLEGMESEELAA------AS-KLHSDVNFYQT--T---------------------SADVAEFFHIHPK 228 (378)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~~~~~------~a-~~~~~~~f~~~--~---------------------~~~~~~~~~i~~~ 228 (378)
++++.++.|+++||......... +. .+..++.+... . +.++++.+++..
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g- 82 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG- 82 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc-
Confidence 46788899999999875533322 22 23334444322 1 235888999986
Q ss_pred CCCCeEEEeecCCCCccccCCCCCHHHHHHHH
Q 017071 229 SKRPALIFLHLEAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 229 ~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (378)
.|+++++..++.....+.|-.+.++|.+++
T Consensus 83 --tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 --TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred --cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 899999875443455678999999988875
No 299
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=95.03 E-value=0.43 Score=41.10 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=69.9
Q ss_pred CCcEEcChhcHHHHhcCCCcEEEEEecCCCh-hHHhhHHHHHHHHHHhcC--Cc----EEEEEeCcCc------------
Q 017071 56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG--EA----DLVMVDAYLE------------ 116 (378)
Q Consensus 56 ~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~-~C~~~~p~~~~~~~~~~~--~~----~~~~vd~~~~------------ 116 (378)
..+++-+++.+.+.-..++.+|++|-=+.|| -|-.+...+.++..+++. ++ .|+.||-..+
T Consensus 122 F~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF 201 (280)
T KOG2792|consen 122 FSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEF 201 (280)
T ss_pred eEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhc
Confidence 4555556665555555799999999999997 688887777777666655 22 4666664222
Q ss_pred --------------HHHHHHcCCCCC--c-----------E--EEEEe-CCeEeeeeeCCCCHHHHHHHHHHHhc
Q 017071 117 --------------KDLAKEYNILAY--P-----------T--LYLFV-AGVRQFQFFGERTRDVISAWVREKMT 161 (378)
Q Consensus 117 --------------~~~~~~~~v~~~--P-----------t--~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~ 161 (378)
.++|++|.|.-- | | +++++ +|+.+.-|--.++++++.+-|.++..
T Consensus 202 ~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 202 HPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred ChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 357888887532 2 2 34445 78444444446899999988877653
No 300
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=95.01 E-value=0.058 Score=52.20 Aligned_cols=82 Identities=9% Similarity=0.125 Sum_probs=55.3
Q ss_pred cCCeEEEEEEcCCCCccHHH---HHHHh-ccC-CceeE-------------------------------EEEccHHHHhh
Q 017071 179 VESKLVLGFLHDLEGMESEE---LAAAS-KLH-SDVNF-------------------------------YQTTSADVAEF 222 (378)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~~---~~~~a-~~~-~~~~f-------------------------------~~~~~~~~~~~ 222 (378)
..++++|.|+++||.+.... +.+++ ++. .++.+ ....+.++++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 46788888999999874433 33333 222 12222 22234567788
Q ss_pred cCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhc
Q 017071 223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 223 ~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
|++.. +|+.+++.++......+.|.++.++|..+|+.-
T Consensus 135 fgV~g---iPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 135 LNISV---YPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred cCCCC---cCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 88886 999988876555666778999999999999943
No 301
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=94.95 E-value=0.097 Score=40.26 Aligned_cols=76 Identities=4% Similarity=-0.046 Sum_probs=48.9
Q ss_pred cCCeEEEEEEcCCCCccHHHH---HHHhcc-----------------------CCceeEEEEccHHHHhhcCCCCCCCCC
Q 017071 179 VESKLVLGFLHDLEGMESEEL---AAASKL-----------------------HSDVNFYQTTSADVAEFFHIHPKSKRP 232 (378)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~~~---~~~a~~-----------------------~~~~~f~~~~~~~~~~~~~i~~~~~~P 232 (378)
..++++|.|+.+||....... ..+++. ...+.+....+.++++.|++.. .|
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~---~P 95 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSV---TP 95 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCc---cc
Confidence 347788889999998643332 222211 1122222334557889999986 89
Q ss_pred eEEEeecCCCCccccCCCCCHHHHHH
Q 017071 233 ALIFLHLEAGKATPFRHQFTRLAIAN 258 (378)
Q Consensus 233 ~i~~~~~~~~~~~~y~g~~~~~~l~~ 258 (378)
+++++..++ ....+.|-.+.+.|.+
T Consensus 96 ~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 96 AIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred EEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 999998775 5556778878777753
No 302
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.93 E-value=0.084 Score=50.95 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=67.4
Q ss_pred ccCCCHHHHHHhhccCC--eEEEEEEcCCCCccH----HHHHH--HhccCCcee---EEEE----ccHHHHhhcCCCCCC
Q 017071 165 YSITTTDEAERILTVES--KLVLGFLHDLEGMES----EELAA--ASKLHSDVN---FYQT----TSADVAEFFHIHPKS 229 (378)
Q Consensus 165 ~~i~~~~~~~~~~~~~~--~~~v~f~~~~~~~~~----~~~~~--~a~~~~~~~---f~~~----~~~~~~~~~~i~~~~ 229 (378)
..+++..++++.+.+++ ++++.||++||-... -.|.+ ......++. ...| .+.++-++|++-+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G-- 534 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG-- 534 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC--
Confidence 34556668888888877 999999999997532 22321 112223332 2334 2345668888875
Q ss_pred CCCeEEEeecCCCCccccCCCCCHHHHHHHHHhc
Q 017071 230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 230 ~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
.|++++|..+.+++....|-++.+.+.+++++.
T Consensus 535 -~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 -VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred -CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 899999997766777789999999999999875
No 303
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=94.43 E-value=0.13 Score=39.36 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=41.2
Q ss_pred HHHHHhhccCCeEEEEEEcCCCCccH---HHHHHHhc-cCCceeEEE---EccH-HHHhhcCCCCCCCCCeEEEeecCC
Q 017071 171 DEAERILTVESKLVLGFLHDLEGMES---EELAAASK-LHSDVNFYQ---TTSA-DVAEFFHIHPKSKRPALIFLHLEA 241 (378)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~~---~~~~~~a~-~~~~~~f~~---~~~~-~~~~~~~i~~~~~~P~i~~~~~~~ 241 (378)
+.++.....+++++|.|+++||++.. +.+...+. ......|.. ..+. ...+.|++.+ ..+|+++++.+++
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g-~~vPt~~f~~~~G 87 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDG-GYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCC-CccceEEEECCCC
Confidence 44455556688999999999999743 33444332 112223332 2222 3456777753 1379999997543
No 304
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.32 E-value=0.45 Score=34.34 Aligned_cols=70 Identities=13% Similarity=-0.067 Sum_probs=47.2
Q ss_pred cCCeEEEEEEcCCCCcc---HHHHHHHhccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCC
Q 017071 179 VESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFT 252 (378)
Q Consensus 179 ~~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~ 252 (378)
.+++-+..|.+++|.+. .+.+..++...+++.+... ..++++++|++.. .|++++ ++ ...+.|..+
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~---vPt~vi--dG---~~~~~G~~~ 82 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMS---VPAIFL--NG---ELFGFGRMT 82 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCcc---CCEEEE--CC---EEEEeCCCC
Confidence 35566777888988763 4455666666667777654 5678999999986 899975 22 234467655
Q ss_pred HHHH
Q 017071 253 RLAI 256 (378)
Q Consensus 253 ~~~l 256 (378)
.+++
T Consensus 83 ~~e~ 86 (89)
T cd03026 83 LEEI 86 (89)
T ss_pred HHHH
Confidence 5544
No 305
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.17 E-value=0.38 Score=36.53 Aligned_cols=89 Identities=7% Similarity=0.063 Sum_probs=57.7
Q ss_pred HHHHhhccCCeEEEEEEcCCCCccHH----HHH--HHh-ccCCceeEEEE-----ccHHHHhhcCCCCCCCCCeEEEeec
Q 017071 172 EAERILTVESKLVLGFLHDLEGMESE----ELA--AAS-KLHSDVNFYQT-----TSADVAEFFHIHPKSKRPALIFLHL 239 (378)
Q Consensus 172 ~~~~~~~~~~~~~v~f~~~~~~~~~~----~~~--~~a-~~~~~~~f~~~-----~~~~~~~~~~i~~~~~~P~i~~~~~ 239 (378)
.++...+.++.++|.|+++||.+... .|. .+. .+..++.+... ....++..|++.. +|+++++.+
T Consensus 9 a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~---~P~~~~i~~ 85 (114)
T cd02958 9 AKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDK---YPHIAIIDP 85 (114)
T ss_pred HHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccC---CCeEEEEeC
Confidence 33444455788899999999964322 222 122 22234433332 3346888999886 999999987
Q ss_pred -CCCCccccCCCCCHHHHHHHHHhc
Q 017071 240 -EAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 240 -~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
....-..+.|..+.+++.+-+++.
T Consensus 86 ~~g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 86 RTGEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred ccCcEeEEEcCCCCHHHHHHHHHHH
Confidence 555566778999998888777653
No 306
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=94.16 E-value=0.3 Score=37.79 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=44.6
Q ss_pred CHHHHHHhhccCCeEEEEEEcCCCCccHHH----HH--HHhc-cCCceeEEEE---ccHHHHhh--------cCCCCCCC
Q 017071 169 TTDEAERILTVESKLVLGFLHDLEGMESEE----LA--AASK-LHSDVNFYQT---TSADVAEF--------FHIHPKSK 230 (378)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~----~~--~~a~-~~~~~~f~~~---~~~~~~~~--------~~i~~~~~ 230 (378)
+.+.+++..+.+++++|.|+++||...... |. +++. +..++.+..+ ..+++++. |++.+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G--- 80 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGG--- 80 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC---
Confidence 345677777889999999999999874322 32 2332 2344444432 34455442 46664
Q ss_pred CCeEEEeecCC
Q 017071 231 RPALIFLHLEA 241 (378)
Q Consensus 231 ~P~i~~~~~~~ 241 (378)
+|+++++.+.+
T Consensus 81 ~Pt~vfl~~~G 91 (124)
T cd02955 81 WPLNVFLTPDL 91 (124)
T ss_pred CCEEEEECCCC
Confidence 99999998764
No 307
>smart00594 UAS UAS domain.
Probab=94.01 E-value=0.36 Score=37.24 Aligned_cols=85 Identities=12% Similarity=0.192 Sum_probs=55.0
Q ss_pred HHHhhccCCeEEEEEEcCCCCccHH----HHHH--Hh-ccCCceeEEEE-----ccHHHHhhcCCCCCCCCCeEEEeecC
Q 017071 173 AERILTVESKLVLGFLHDLEGMESE----ELAA--AS-KLHSDVNFYQT-----TSADVAEFFHIHPKSKRPALIFLHLE 240 (378)
Q Consensus 173 ~~~~~~~~~~~~v~f~~~~~~~~~~----~~~~--~a-~~~~~~~f~~~-----~~~~~~~~~~i~~~~~~P~i~~~~~~ 240 (378)
++...+..+..+|.|+.+||..... .|.. +. .+..++.+... ...+++..|++.. +|+++++.+.
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~---~P~~~~l~~~ 96 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDS---FPYVAIVDPR 96 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCC---CCEEEEEecC
Confidence 3444455778899999999986322 2221 11 12234443322 4456889999986 9999999876
Q ss_pred CCC-----ccccCCCCCHHHHHHHH
Q 017071 241 AGK-----ATPFRHQFTRLAIANFV 260 (378)
Q Consensus 241 ~~~-----~~~y~g~~~~~~l~~fi 260 (378)
.+. .....|..+.+++..++
T Consensus 97 ~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 97 TGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCceeEEEeccccCCCCHHHHHHhh
Confidence 422 33567999999988876
No 308
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.86 E-value=1.2 Score=33.37 Aligned_cols=90 Identities=12% Similarity=0.181 Sum_probs=62.5
Q ss_pred ChhcHHHHhcCC-CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCC---
Q 017071 62 NGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG--- 137 (378)
Q Consensus 62 ~~~~~~~~~~~~-~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g--- 137 (378)
+.++++..+... +.++|-|+..--+ .....|.++|..+.+.+.|+... +..+.+++++.+ |.+++|+.-
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vvl~rp~~~~ 79 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLVVFQPEKFQ 79 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceEEECcHHHh
Confidence 345577776555 7777777766433 46778889999998888887655 457888888864 777787311
Q ss_pred ----eEeeeeeCC-CCHHH-HHHHHHH
Q 017071 138 ----VRQFQFFGE-RTRDV-ISAWVRE 158 (378)
Q Consensus 138 ----~~~~~~~g~-~~~~~-l~~~i~~ 158 (378)
.....|.|. .+.+. |.+||..
T Consensus 80 ~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 80 SKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hhcCcceeeeeccccchHHHHHHHHhc
Confidence 124567777 56656 9999864
No 309
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=93.69 E-value=0.4 Score=32.23 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=35.9
Q ss_pred EEEEEEcCCCCccH---HHHHHHhccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEE
Q 017071 183 LVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIF 236 (378)
Q Consensus 183 ~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~ 236 (378)
-+..|+.+||.+.. +.+.+++....++.|... .++++++++++.. .|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~---vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMS---VPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcc---cCEEEE
Confidence 36678999998743 344555544456766643 5678999999976 899875
No 310
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=93.65 E-value=0.22 Score=41.05 Aligned_cols=82 Identities=5% Similarity=-0.067 Sum_probs=50.2
Q ss_pred cCCeEEEEEEcCCCCccHHHHHHHhccC-CceeEE--------------------------EEccHHHHhhcCCCCCCCC
Q 017071 179 VESKLVLGFLHDLEGMESEELAAASKLH-SDVNFY--------------------------QTTSADVAEFFHIHPKSKR 231 (378)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~~~~~~a~~~-~~~~f~--------------------------~~~~~~~~~~~~i~~~~~~ 231 (378)
.++++++.|+.+||.+.......+.++. .++.+. ...+..+.+.|++.. .
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~---~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG---A 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee---C
Confidence 4678888899999986543322221111 112211 122335566677764 7
Q ss_pred CeEEEeecCCCCccccCCCCCHHHHHHHHHhc
Q 017071 232 PALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 232 P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
|+.+++.+++.-...+.|..+.+++.++++..
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 97777765544556677888999999998764
No 311
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=93.34 E-value=0.2 Score=38.74 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=43.3
Q ss_pred CCeEEEEEEcCCCCccHHHHHH---HhccCCceeEE--------------------------EEccHHHHhhcCCCCCCC
Q 017071 180 ESKLVLGFLHDLEGMESEELAA---ASKLHSDVNFY--------------------------QTTSADVAEFFHIHPKSK 230 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~~---~a~~~~~~~f~--------------------------~~~~~~~~~~~~i~~~~~ 230 (378)
+++++|.|+++||.+....... .++.. ++.+. ......+++.|++..
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~--- 100 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG--- 100 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC---
Confidence 5688999999999875443333 22221 12222 123445667777765
Q ss_pred CCeEEEeecCCCCccccCCCCCHHHH
Q 017071 231 RPALIFLHLEAGKATPFRHQFTRLAI 256 (378)
Q Consensus 231 ~P~i~~~~~~~~~~~~y~g~~~~~~l 256 (378)
.|+.+++.+++.....+.|.++.+.|
T Consensus 101 ~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 101 VPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCeEEEECCCceEEEEEeccCChHhc
Confidence 78666666554455566777766543
No 312
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=93.20 E-value=1.2 Score=37.22 Aligned_cols=35 Identities=23% Similarity=0.534 Sum_probs=28.6
Q ss_pred HHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHH
Q 017071 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (378)
Q Consensus 119 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (378)
.+.++||.|+||+++ +|+ ..+.|....+.|.+.|+
T Consensus 159 ~a~~~gv~GvP~~vv--~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 159 EARQLGVFGVPTFVV--NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHTTCSSSSEEEE--TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHcCCcccCEEEE--CCE--EEEECCCCHHHHHHHhC
Confidence 456789999999999 775 67889999999887764
No 313
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.62 Score=40.73 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHHHH
Q 017071 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 119 ~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
+++++||.++||+++-.+ .+.|..+.++|.+.|...
T Consensus 207 ~a~~~gv~gTPt~~v~~~-----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 207 LAQQLGVNGTPTFIVNGK-----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHhcCCCcCCeEEECCe-----eecCCCCHHHHHHHHHHh
Confidence 556789999999877332 788888889988888654
No 314
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.23 Score=41.56 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=54.9
Q ss_pred cccCCCHHHHHHhhcc--CCeEEEEEEcCCC---CccHHHHHHHh-ccC-CceeEEEE---ccHHHHhhcCCCCC---CC
Q 017071 164 TYSITTTDEAERILTV--ESKLVLGFLHDLE---GMESEELAAAS-KLH-SDVNFYQT---TSADVAEFFHIHPK---SK 230 (378)
Q Consensus 164 ~~~i~~~~~~~~~~~~--~~~~~v~f~~~~~---~~~~~~~~~~a-~~~-~~~~f~~~---~~~~~~~~~~i~~~---~~ 230 (378)
++..++.+.+++.+.. ...|+|-||+.|. ....+.|.+++ ++. ...+|+.+ .-++++.+|+++.. ..
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQ 205 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQ 205 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccccc
Confidence 3444455555555544 4689999997764 45677888887 443 56788765 56788999998753 56
Q ss_pred CCeEEEeecCC
Q 017071 231 RPALIFLHLEA 241 (378)
Q Consensus 231 ~P~i~~~~~~~ 241 (378)
.||+++|..+.
T Consensus 206 LPT~ilFq~gk 216 (265)
T KOG0914|consen 206 LPTYILFQKGK 216 (265)
T ss_pred CCeEEEEccch
Confidence 89999999875
No 315
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=92.74 E-value=0.57 Score=39.11 Aligned_cols=81 Identities=5% Similarity=-0.053 Sum_probs=48.6
Q ss_pred cCCeEEEEEEcCCCCccHHHHHHHhccC-CceeEEEE--------------------------ccHHHHhhcCCCCCCCC
Q 017071 179 VESKLVLGFLHDLEGMESEELAAASKLH-SDVNFYQT--------------------------TSADVAEFFHIHPKSKR 231 (378)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~~~~~~a~~~-~~~~f~~~--------------------------~~~~~~~~~~i~~~~~~ 231 (378)
..++++|.|+++||.+..+....+.++. ..+.+..+ .+..+...|++.. .
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~---~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG---A 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc---C
Confidence 4567778888888887555443333221 12333222 1122334566654 7
Q ss_pred CeEEEeecCCCCccccCCCCCHHHHHHHHHh
Q 017071 232 PALIFLHLEAGKATPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 232 P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~ 262 (378)
|+.+++.++..-...+.|..+.+++.++|+.
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 9777777655556677788888888888765
No 316
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=91.32 E-value=0.92 Score=36.18 Aligned_cols=53 Identities=8% Similarity=0.197 Sum_probs=37.7
Q ss_pred EEEEecC------CChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHH----HHcCC----CCCcEEEEEeCC
Q 017071 77 MVMFYAN------WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNI----LAYPTLYLFVAG 137 (378)
Q Consensus 77 lv~F~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v----~~~Pt~~~~~~g 137 (378)
+|.|.++ +|++|+.....|+.. ++.|-.+|++.+++.. +..+- ..+|.+++ +|
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G 68 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DG 68 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CC
Confidence 3456666 899999998888764 5788889998775543 34444 57888764 56
No 317
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=91.29 E-value=2.3 Score=34.23 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=48.4
Q ss_pred CCeEEEEEEcCCCCccHHHH---HHHhccCCceeEE--EEcc-------------HHHH-hhc---CCCCCCCCCeEEEe
Q 017071 180 ESKLVLGFLHDLEGMESEEL---AAASKLHSDVNFY--QTTS-------------ADVA-EFF---HIHPKSKRPALIFL 237 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~---~~~a~~~~~~~f~--~~~~-------------~~~~-~~~---~i~~~~~~P~i~~~ 237 (378)
.+..+|.|+++||.+..+.. .++++.. ++.+. ...+ .+.. ..| ++.. .|+.+++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~---iPTt~LI 125 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV---TPATFLV 125 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC---CCeEEEE
Confidence 45569999999999865544 4443221 12222 1111 2222 334 5554 8999999
Q ss_pred ecCCCC-ccccCCCCCHHHHHHHHHh
Q 017071 238 HLEAGK-ATPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 238 ~~~~~~-~~~y~g~~~~~~l~~fi~~ 262 (378)
.+.+.. ...+.|..+.+++.+.|..
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHH
Confidence 876543 3367899999888887764
No 318
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.86 E-value=5.3 Score=31.12 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=52.8
Q ss_pred EEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCC----CcEEEEEeCCeEeeeeeCCCCHHH
Q 017071 76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA----YPTLYLFVAGVRQFQFFGERTRDV 151 (378)
Q Consensus 76 ~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~----~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (378)
-++.++.|.|+-|......++. .++.+-.+..++-..+-+++||.. =-|.++ +| .-..|....+.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G---y~vEGHVPa~a 95 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG---YYVEGHVPAEA 95 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC---EEEeccCCHHH
Confidence 3677999999999987776662 267788888888888888898742 223322 55 34568888898
Q ss_pred HHHHHHHH
Q 017071 152 ISAWVREK 159 (378)
Q Consensus 152 l~~~i~~~ 159 (378)
+..++.+.
T Consensus 96 I~~ll~~~ 103 (149)
T COG3019 96 IARLLAEK 103 (149)
T ss_pred HHHHHhCC
Confidence 88888654
No 319
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=90.64 E-value=1.2 Score=36.71 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=72.7
Q ss_pred cCCcccCCCHHHHHHhhccCCeEEEEEEcCC---CCccHHHHHHHhccCCceeEEEE---ccHHHHhhcCCCCCCCCCeE
Q 017071 161 TLGTYSITTTDEAERILTVESKLVLGFLHDL---EGMESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL 234 (378)
Q Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~~~v~f~~~~---~~~~~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i 234 (378)
.....++.++.++-+...+...+++-||.+. |.-.-+.+..+|..+-..+|..+ ..+=++.+++|.- +|++
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV---LP~v 141 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV---LPTV 141 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE---eeeE
Confidence 3567888888888888888888888899774 66677888899988888888876 4556889999986 8999
Q ss_pred EEeecCCCCcccc----C--C---CCCHHHHHHHHHhc
Q 017071 235 IFLHLEAGKATPF----R--H---QFTRLAIANFVTHT 263 (378)
Q Consensus 235 ~~~~~~~~~~~~y----~--g---~~~~~~l~~fi~~~ 263 (378)
++|+++. ...| . | +++.+.|..=|...
T Consensus 142 ~l~k~g~--~~D~iVGF~dLGnkDdF~te~LE~rL~~S 177 (211)
T KOG1672|consen 142 ALFKNGK--TVDYVVGFTDLGNKDDFTTETLENRLAKS 177 (211)
T ss_pred EEEEcCE--EEEEEeeHhhcCCCCcCcHHHHHHHHhhc
Confidence 9999873 3322 1 2 35666666555543
No 320
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=90.09 E-value=5 Score=29.26 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=52.4
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeE-eeeeeCCCCHH
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR-QFQFFGERTRD 150 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~g~~~~~ 150 (378)
++.+.++.|..+. ..|.++...++++++.- +++.+-..+..+ ..|++.+.++|+. -.+|.|...-.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence 4455566676655 89999999888888764 366664433221 3799999887632 47999998888
Q ss_pred HHHHHHHH
Q 017071 151 VISAWVRE 158 (378)
Q Consensus 151 ~l~~~i~~ 158 (378)
++..+|..
T Consensus 85 Ef~Slila 92 (94)
T cd02974 85 EFTSLVLA 92 (94)
T ss_pred hHHHHHHH
Confidence 88888764
No 321
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=89.98 E-value=1.8 Score=34.75 Aligned_cols=129 Identities=12% Similarity=0.131 Sum_probs=86.1
Q ss_pred ccCCCcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC--------cHH----H
Q 017071 53 LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------EKD----L 119 (378)
Q Consensus 53 ~~~~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~--------~~~----~ 119 (378)
..+-.+.+++++.++--..+++++||-=-|+-|+.-..-...+..+.++|++ ++.++..-|.+ +.+ +
T Consensus 14 iydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~ 93 (171)
T KOG1651|consen 14 IYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFV 93 (171)
T ss_pred eeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHH
Confidence 3445667777777765556899999888999999988777899999999987 89999888853 223 3
Q ss_pred HHHcCCCCCcEEEEEe-CCeEeeeeeCCCCHHHHHHHHHHHhcCCcccCCCHHHHHHhhccCCeEEEEEEcCCC
Q 017071 120 AKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLE 192 (378)
Q Consensus 120 ~~~~~v~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~f~~~~~ 192 (378)
+.+|+.. +|-+-=++ ||. .+..+.+|+.+..+..+.. .-.=++++|+-..+-.+|.=|.+..
T Consensus 94 ~~r~~~~-f~if~KidVNG~---------~~~PlykfLK~~~~~~lg~-~IkWNF~KFLVd~~G~vv~Ry~ptt 156 (171)
T KOG1651|consen 94 KVRYGAE-FPIFQKIDVNGD---------NADPLYKFLKKVKGGPLGD-DIKWNFTKFLVDKDGHVVKRFSPTT 156 (171)
T ss_pred HhccCCC-CccEeEEecCCC---------CCchHHHHHhhcCCCcccc-cceeeeEEEeECCCCcEEEeeCCCC
Confidence 4566654 34333333 552 6778889998876553332 1122566676555555555555433
No 322
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=89.77 E-value=1.6 Score=46.76 Aligned_cols=82 Identities=9% Similarity=0.036 Sum_probs=55.6
Q ss_pred cCCeEEEEEEcCCCCccHH---HHHHHh-ccCCc-eeEEEE------------------------------ccHHHHhhc
Q 017071 179 VESKLVLGFLHDLEGMESE---ELAAAS-KLHSD-VNFYQT------------------------------TSADVAEFF 223 (378)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~---~~~~~a-~~~~~-~~f~~~------------------------------~~~~~~~~~ 223 (378)
..++++|.|+++||.+... .+.++. ++.++ +.+..+ .+.++.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 3678999999999998544 444444 33332 333221 123456678
Q ss_pred CCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhc
Q 017071 224 HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT 263 (378)
Q Consensus 224 ~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~ 263 (378)
++.. +|+.+++.++......+.|....+.|.++|...
T Consensus 499 ~V~~---iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSS---WPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCCc---cceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 8875 899999976555556778988888999988864
No 323
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=88.90 E-value=2.5 Score=29.03 Aligned_cols=59 Identities=25% Similarity=0.313 Sum_probs=47.0
Q ss_pred EEEEEecCCChhHHhhHHHHHHHHHHh-cCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEE
Q 017071 76 VMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLF 134 (378)
Q Consensus 76 ~lv~F~a~wC~~C~~~~p~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 134 (378)
.+..|-+..-+.+++....+.++-+.+ ++.+.+-.||..+++++++.++|-.+||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 345555666688888888888876665 44889999999999999999999999996543
No 324
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=88.83 E-value=3.3 Score=37.02 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=92.8
Q ss_pred CcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHHHHhcCCcccCCCHHHHHHhh----ccCCeEEEEEE
Q 017071 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL----TVESKLVLGFL 188 (378)
Q Consensus 113 ~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~~~~v~f~ 188 (378)
|+-.++.+++++|.-+|-.+.++ |+.... .-..+.+++.+.+.+.-..+-+...+..++.+.. +..+.+++.-.
T Consensus 9 ~dl~~~~~~~~~I~vvPl~I~~~-~~~y~D-~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~i 86 (275)
T TIGR00762 9 ADLPPELIEEYGITVVPLTVIID-GKTYRD-GVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSIHL 86 (275)
T ss_pred cCCCHHHHHHcCCEEEEEEEEEC-CEEeec-CCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEc
Confidence 44457889999999999998876 433322 1247899999999764333334444555555444 34444443333
Q ss_pred cCCCCccHHHHHHHhccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhcCCCce
Q 017071 189 HDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLV 268 (378)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~P~~ 268 (378)
++.-+..+.....+++...+.++....+..+.-..+.- +.. -........+.+++.+|++...--..
T Consensus 87 Ss~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~---------v~~----a~~~~~~G~s~~eI~~~l~~~~~~~~ 153 (275)
T TIGR00762 87 SSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLL---------VLE----AAKLAEEGKSLEEILAKLEELRERTK 153 (275)
T ss_pred CCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHH---------HHH----HHHHHHcCCCHHHHHHHHHHHHhhcE
Confidence 44445566666666655444455555554443333221 000 00011222478999999998877777
Q ss_pred EEecccchhhhhccch
Q 017071 269 VTLTIHNAQFVFQDPR 284 (378)
Q Consensus 269 ~~l~~~~~~~~~~~~~ 284 (378)
.-+..+++..+..+++
T Consensus 154 ~~f~v~~L~~L~~gGR 169 (275)
T TIGR00762 154 LYFVVDTLEYLVKGGR 169 (275)
T ss_pred EEEEECcHHHHHhcCC
Confidence 7788878777777765
No 325
>PF13728 TraF: F plasmid transfer operon protein
Probab=88.66 E-value=4.2 Score=34.79 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=49.5
Q ss_pred CCeEEEEEEcCCCCccH---HHHHHHhccCC-ceeEEEE------------ccHHHHhhcCCCCCCCCCeEEEeecCCCC
Q 017071 180 ESKLVLGFLHDLEGMES---EELAAASKLHS-DVNFYQT------------TSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~~~---~~~~~~a~~~~-~~~f~~~------------~~~~~~~~~~i~~~~~~P~i~~~~~~~~~ 243 (378)
++..++.||.+.|.... ..+...+...+ .+..... .+..+++++|+.. .|++++..+....
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~---~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV---TPALFLVNPNTKK 196 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc---CCEEEEEECCCCe
Confidence 56678889999998543 34444443222 2222221 2478999999986 8999999987644
Q ss_pred cccc-CCCCCHHHHHH
Q 017071 244 ATPF-RHQFTRLAIAN 258 (378)
Q Consensus 244 ~~~y-~g~~~~~~l~~ 258 (378)
.... .|-++.++|.+
T Consensus 197 ~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 197 WYPVSQGFMSLDELED 212 (215)
T ss_pred EEEEeeecCCHHHHHH
Confidence 4433 57788887764
No 326
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=88.61 E-value=2.1 Score=31.67 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=34.6
Q ss_pred CCeEEEEEEcCCCCccHHH---HHHHh-ccC-CceeEEEE---cc-----------------------HHHHhhcCCCCC
Q 017071 180 ESKLVLGFLHDLEGMESEE---LAAAS-KLH-SDVNFYQT---TS-----------------------ADVAEFFHIHPK 228 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~---~~~~a-~~~-~~~~f~~~---~~-----------------------~~~~~~~~i~~~ 228 (378)
++.+++.|+.+||...... +..+. ++. .++.+..+ .+ ..+.+.|++..
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG- 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc-
Confidence 5678888888888764433 33333 221 34555543 21 45667777764
Q ss_pred CCCCeEEEeecCC
Q 017071 229 SKRPALIFLHLEA 241 (378)
Q Consensus 229 ~~~P~i~~~~~~~ 241 (378)
.|+++++.++.
T Consensus 98 --~P~~~l~d~~g 108 (116)
T cd02966 98 --LPTTFLIDRDG 108 (116)
T ss_pred --cceEEEECCCC
Confidence 67777776543
No 327
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=88.39 E-value=2.4 Score=30.21 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=57.5
Q ss_pred CcEEEEEecCCChhHHhhHHHHHHHHHH-hcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCC
Q 017071 74 RNVMVMFYANWCYWSKKLAPEFAAAAKM-LKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERT 148 (378)
Q Consensus 74 ~~~lv~F~a~wC~~C~~~~p~~~~~~~~-~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 148 (378)
..++=.|.|..-+.+++....+.++-+. +.+.+.+-.||..+++++++.++|-.+||++=...+ ...+..|..+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeecccc
Confidence 3456667788888888888888887654 445788888999999999999999999996544444 5667777654
No 328
>PRK09301 circadian clock protein KaiB; Provisional
Probab=87.77 E-value=2.5 Score=31.14 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=59.4
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHH-hcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCC
Q 017071 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKM-LKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERT 148 (378)
Q Consensus 73 ~~~~lv~F~a~wC~~C~~~~p~~~~~~~~-~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 148 (378)
+..++=.|.|..-+..++....+.++-+. +.+.+.+-.||+.+++++++.++|-.+||++=...+ ...+..|..+
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-Ccceeecccc
Confidence 45667778888888899988888887654 445788888999999999999999999996544444 5677788754
No 329
>PHA03075 glutaredoxin-like protein; Provisional
Probab=87.44 E-value=1 Score=33.60 Aligned_cols=36 Identities=8% Similarity=0.299 Sum_probs=29.2
Q ss_pred CcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeC
Q 017071 74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113 (378)
Q Consensus 74 ~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~ 113 (378)
|.++|.|.-|-|+-|......+.++..+|. +.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~----ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD----ILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc----EEEEEe
Confidence 568999999999999999988877666554 677774
No 330
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=87.23 E-value=2.8 Score=30.24 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=7.8
Q ss_pred CeEEEEEEcCCCCc
Q 017071 181 SKLVLGFLHDLEGM 194 (378)
Q Consensus 181 ~~~~v~f~~~~~~~ 194 (378)
+++++.|+++||.+
T Consensus 2 K~~ll~fwa~~c~~ 15 (95)
T PF13905_consen 2 KPVLLYFWASWCPP 15 (95)
T ss_dssp SEEEEEEE-TTSHH
T ss_pred CEEEEEEECCCCHH
Confidence 45566666666665
No 331
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=87.12 E-value=1.3 Score=33.19 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=45.8
Q ss_pred CcEEcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC
Q 017071 57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL 115 (378)
Q Consensus 57 ~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~ 115 (378)
.+.+++++.++-.-.+++++||-=-|+-|+.-. ....++++.++|++ ++.++..=|.+
T Consensus 5 ~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 5 SAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp EEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred eeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 344556655554446899999999999999888 77799999999986 88888888864
No 332
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=87.10 E-value=7.9 Score=26.74 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=40.6
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc----HHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHH
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (378)
..++.++|+.|++.+-.+.+. ++.+-.++++.. .++.+.-+-..+|++..-++|.. ..+...|.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~------l~es~~I~ 70 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ------MFESADIV 70 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE------EEcHHHHH
Confidence 456778999999877666554 344444555433 23333335567898743223421 23566777
Q ss_pred HHHHHH
Q 017071 154 AWVREK 159 (378)
Q Consensus 154 ~~i~~~ 159 (378)
+|+.+.
T Consensus 71 ~yL~~~ 76 (77)
T cd03041 71 KYLFKT 76 (77)
T ss_pred HHHHHh
Confidence 777653
No 333
>PHA02125 thioredoxin-like protein
Probab=86.84 E-value=1.6 Score=30.17 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=30.6
Q ss_pred EEEEEcCCCCccH---HHHHHHhccCCceeEEEEccHHHHhhcCCCCCCCCCeEE
Q 017071 184 VLGFLHDLEGMES---EELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALI 235 (378)
Q Consensus 184 ~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~ 235 (378)
++.|+++||++.. +.+..++. ..+......+.+++++|++.. +|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~--~~~~vd~~~~~~l~~~~~v~~---~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEY--TYVDVDTDEGVELTAKHHIRS---LPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhh--eEEeeeCCCCHHHHHHcCCce---eCeEE
Confidence 6789999998754 33333221 112222335678999999986 99987
No 334
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=2.4 Score=28.96 Aligned_cols=57 Identities=18% Similarity=0.164 Sum_probs=38.9
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH----------------HHHHHcCCCCCcEEEEEeCCeEee
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----------------DLAKEYNILAYPTLYLFVAGVRQF 141 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~----------------~~~~~~~v~~~Pt~~~~~~g~~~~ 141 (378)
+.|+|.-||.|.....+++++ ++.+-.|++.+.. +-++..|--|+|.+.+ ++|+++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHc------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEEE
Confidence 679999999999888887776 3445556654432 2345677888999754 5554443
No 335
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=86.49 E-value=14 Score=30.82 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=60.1
Q ss_pred CCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcC----------------------------cHHHHHH
Q 017071 73 NRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAKE 122 (378)
Q Consensus 73 ~~~~lv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 122 (378)
++.+++.|| ++--+-|-.+...+.+...+++. ++.++.+.+|. +.++|+.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 455555555 45567888899999998888877 78888777653 4578999
Q ss_pred cCCCC------CcEEEEEe-CCeEee--eee-C-CCCHHHHHHHHHHH
Q 017071 123 YNILA------YPTLYLFV-AGVRQF--QFF-G-ERTRDVISAWVREK 159 (378)
Q Consensus 123 ~~v~~------~Pt~~~~~-~g~~~~--~~~-g-~~~~~~l~~~i~~~ 159 (378)
||+-. .=.+++++ +|.+.. .|. + .++.+++.+-+..+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 99853 23577777 885433 222 2 58888888877654
No 336
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=86.31 E-value=0.81 Score=34.14 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=24.8
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~ 116 (378)
..|+.++|+.|++....+++. ++.|-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 468899999999988777763 566667776553
No 337
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=86.21 E-value=8.2 Score=33.66 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=38.1
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcC-CCCCcEEEEEe
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN-ILAYPTLYLFV 135 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~~~~~ 135 (378)
..+|+.+++.-+.||+.|...+=.+-.+-.++.. +.+.-.-.+. .+ -..+||+.+..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEec
Confidence 5789999999999999999887666655566653 3222211111 22 24589988876
No 338
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=85.85 E-value=9.8 Score=35.45 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=64.5
Q ss_pred cCCCcEEEEEecCCChhHHhhH--HHHHHH-HHHhcCCcEEEEEeCcC--cHHHHHHcCCCCCcEEEEEe-CCeEeeeee
Q 017071 71 GKNRNVMVMFYANWCYWSKKLA--PEFAAA-AKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFV-AGVRQFQFF 144 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~--p~~~~~-~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~ 144 (378)
..++.++|-|-+..-...+++. -.++.. +..+...++.++|+... ...++.-|.+..+|+++++. .|..+....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 3566778888777777777766 223332 22222256666666543 45677888999999999998 898889999
Q ss_pred CCCCHHHHHHHHHHHh
Q 017071 145 GERTRDVISAWVREKM 160 (378)
Q Consensus 145 g~~~~~~l~~~i~~~~ 160 (378)
|....++|..-|.+..
T Consensus 96 g~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTADELASSIEKVW 111 (506)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999998888754
No 339
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=85.12 E-value=2.9 Score=32.41 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=36.2
Q ss_pred cCCeEEEEEEcCCCCccHHH---HHHHh-ccC---CceeEEEE-c--------------------------cHHHHhhcC
Q 017071 179 VESKLVLGFLHDLEGMESEE---LAAAS-KLH---SDVNFYQT-T--------------------------SADVAEFFH 224 (378)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~~---~~~~a-~~~---~~~~f~~~-~--------------------------~~~~~~~~~ 224 (378)
.+++++|.|+++||.+.... +.++. ++. .++.+..+ . ...+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 35688999999999874433 33222 222 23333321 1 135677888
Q ss_pred CCCCCCCCeEEEeecCC
Q 017071 225 IHPKSKRPALIFLHLEA 241 (378)
Q Consensus 225 i~~~~~~P~i~~~~~~~ 241 (378)
+.. +|+++++.+++
T Consensus 97 v~~---~P~~~lid~~G 110 (131)
T cd03009 97 IEG---IPTLIILDADG 110 (131)
T ss_pred CCC---CCEEEEECCCC
Confidence 876 89999887653
No 340
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=84.62 E-value=4.6 Score=33.91 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=65.9
Q ss_pred CcccCCCHHHHHHhhccC-C--eEEEEEEcC---CCCccHHHHHHHhccCCceeEEEE--ccHHHHhhcCCCCCCCCCeE
Q 017071 163 GTYSITTTDEAERILTVE-S--KLVLGFLHD---LEGMESEELAAASKLHSDVNFYQT--TSADVAEFFHIHPKSKRPAL 234 (378)
Q Consensus 163 ~~~~i~~~~~~~~~~~~~-~--~~~v~f~~~---~~~~~~~~~~~~a~~~~~~~f~~~--~~~~~~~~~~i~~~~~~P~i 234 (378)
.|.++++..++.+.+... + ..+|-.|.+ .|+.......-+|.-...++|..+ ++...-++|..+. +|++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n~---lP~L 215 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLNV---LPTL 215 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccchhhhcccC---CceE
Confidence 477888888888777664 3 333444544 233444455556666677888765 4445567888876 8999
Q ss_pred EEeecCCC--Ccc----ccCCCCCHHHHHHHHHhcCCCc
Q 017071 235 IFLHLEAG--KAT----PFRHQFTRLAIANFVTHTKHPL 267 (378)
Q Consensus 235 ~~~~~~~~--~~~----~y~g~~~~~~l~~fi~~~~~P~ 267 (378)
++|+.++- .++ .+-.++...++..|++...+-+
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gllp 254 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLLP 254 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCCc
Confidence 99998741 111 2223466789999999876543
No 341
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=84.30 E-value=3.8 Score=27.71 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=36.4
Q ss_pred EEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHH
Q 017071 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (378)
Q Consensus 79 ~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (378)
.++.++|++|++.+-.+....- .+....++........+..+-..+|++.. ++|.. ..+...|.+||.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~------l~es~aI~~yL~ 70 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF------MAESLDIVAFID 70 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE------eehHHHHHHHHh
Confidence 5678999999987776655321 23333444333333333444456888632 33532 224455555553
No 342
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=84.24 E-value=11 Score=25.83 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=42.6
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC--cHHHHHHcCCCCCcEEEEEe--CCeEeeeeeCCCCHHHH
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTRDVI 152 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~~l 152 (378)
+..|+.++|+.|++.+-.+... ++.+-.++.+. ..++ +.-+-..+|++..=+ +|.. ..+...|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~------l~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ------LVDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC------CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE------EEcHHHH
Confidence 3467889999999988665543 33333344332 2233 334556789886532 2321 2366778
Q ss_pred HHHHHHHhc
Q 017071 153 SAWVREKMT 161 (378)
Q Consensus 153 ~~~i~~~~~ 161 (378)
.+++.+.++
T Consensus 69 ~~yL~~~~~ 77 (77)
T cd03040 69 ISTLKTYLG 77 (77)
T ss_pred HHHHHHHcC
Confidence 888877653
No 343
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=84.11 E-value=6.9 Score=29.21 Aligned_cols=53 Identities=8% Similarity=-0.017 Sum_probs=30.3
Q ss_pred cCCeEEEEEEcCCCCccH---HHHHHHh-ccCCceeEEEEc------cHHHHhhcCCCCCCCCCeE
Q 017071 179 VESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQTT------SADVAEFFHIHPKSKRPAL 234 (378)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~~------~~~~~~~~~i~~~~~~P~i 234 (378)
+.++++|.|+.+||.+.. +.+.+++ ...+++.+..+. ...+++++++.. +|.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~---~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEA---FPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCC---CcEE
Confidence 356888889999998744 3444444 333445544431 123456667653 5654
No 344
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=84.01 E-value=4.7 Score=27.30 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=35.5
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC-cHHHHHHcCCCCCcEEEEEeCCe
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-EKDLAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~ 138 (378)
+.|+.+||++|++.+-.+.+..- .+....+|... ..++.+......+|++.. ++|.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~ 58 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGT 58 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCc
Confidence 45788999999988766554322 45556666543 345655556678999842 3453
No 345
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=83.63 E-value=4 Score=33.78 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=47.4
Q ss_pred EEEEEcCCCCccHHH---HHHHhccCCceeEE-EE---------------ccHHHHhhcCCCCCCCCCeEEEeecCCCCc
Q 017071 184 VLGFLHDLEGMESEE---LAAASKLHSDVNFY-QT---------------TSADVAEFFHIHPKSKRPALIFLHLEAGKA 244 (378)
Q Consensus 184 ~v~f~~~~~~~~~~~---~~~~a~~~~~~~f~-~~---------------~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~ 244 (378)
+|.|+.+||.+..+. +.+.++..+ +.+. .. ....+.+.|+... ..+|+.+++..+....
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~-~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIP-VATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCC-CCCCeEEEEeCCCcEE
Confidence 667999999875544 344442222 2221 11 1233667788410 1389999998765443
Q ss_pred -cccCCCCCHHHHHHHHHh
Q 017071 245 -TPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 245 -~~y~g~~~~~~l~~fi~~ 262 (378)
..+-|..+.++|.+.|..
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDT 169 (181)
T ss_pred EEEEECCCCHHHHHHHHHH
Confidence 468899998888777764
No 346
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=83.10 E-value=12 Score=25.54 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=48.8
Q ss_pred EEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC-cHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHH
Q 017071 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (378)
Q Consensus 79 ~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (378)
.++.++|+.|++.+=.++...- .+.+..++..+ ...+.+...-..+|++. .+|..+ .+...|.++|.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l------~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL------TDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE------ESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE------eCHHHHHHHHH
Confidence 3678999999987655544311 45566666555 35666777777899986 567533 26788889988
Q ss_pred HHhcC
Q 017071 158 EKMTL 162 (378)
Q Consensus 158 ~~~~~ 162 (378)
+..+.
T Consensus 69 ~~~~~ 73 (75)
T PF13417_consen 69 ERYPG 73 (75)
T ss_dssp HHSTS
T ss_pred HHcCC
Confidence 87644
No 347
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=82.21 E-value=0.36 Score=40.96 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=63.1
Q ss_pred CHHHHHHhhccCCeEEEEEEcCCCCc---cHHHHHHHhc----cCCceeE-EEEccHHHHhhcCCCCCCCCCeEEEeecC
Q 017071 169 TTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASK----LHSDVNF-YQTTSADVAEFFHIHPKSKRPALIFLHLE 240 (378)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~~~---~~~~~~~~a~----~~~~~~f-~~~~~~~~~~~~~i~~~~~~P~i~~~~~~ 240 (378)
+.++..++++ ..+.+.|+.+||.. ....+...|. +.-++.+ ..+.++.+.-+|-+.. .|+|.-.+++
T Consensus 30 ~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta---LptIYHvkDG 104 (248)
T KOG0913|consen 30 DEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA---LPTIYHVKDG 104 (248)
T ss_pred cccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe---cceEEEeecc
Confidence 3455555543 34677888888864 2333333332 2223332 3678888999998886 7887655554
Q ss_pred CCCccccCCCCCHHHHHHHHHhcCCCceEE
Q 017071 241 AGKATPFRHQFTRLAIANFVTHTKHPLVVT 270 (378)
Q Consensus 241 ~~~~~~y~g~~~~~~l~~fi~~~~~P~~~~ 270 (378)
..-+|.|.++.+++.+|+.......+..
T Consensus 105 --eFrrysgaRdk~dfisf~~~r~w~~i~p 132 (248)
T KOG0913|consen 105 --EFRRYSGARDKNDFISFEEHREWQSIDP 132 (248)
T ss_pred --ccccccCcccchhHHHHHHhhhhhccCC
Confidence 7889999999999999999876544443
No 348
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.75 E-value=3.1 Score=34.50 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=34.8
Q ss_pred HHHHHHcCCCCCcEEEEEeCCeEeeeeeC--CCCHHHHHHHHHHHh
Q 017071 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFG--ERTRDVISAWVREKM 160 (378)
Q Consensus 117 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g--~~~~~~l~~~i~~~~ 160 (378)
..+++++++.|+||+.+-+||+....-.| ..+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 45788999999999999999965554456 467788888887665
No 349
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=81.51 E-value=2.9 Score=32.61 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=25.4
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~ 117 (378)
+..|+.+||+.|++....+++- ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4568899999999987766543 5667777766553
No 350
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.39 E-value=3.7 Score=35.08 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=35.7
Q ss_pred HHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHHHHhcCCc
Q 017071 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGT 164 (378)
Q Consensus 117 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~ 164 (378)
...+++.||+++|++++ +| .....|..+.+.+..-|++.++...
T Consensus 174 ~~~A~e~gI~gVP~fv~--d~--~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF--DG--KYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHHCCCccCceEEE--cC--cEeecCCCCHHHHHHHHHHHHhccc
Confidence 34678899999999988 33 2567899999999999999886544
No 351
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=81.04 E-value=3.5 Score=31.41 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=26.3
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~ 117 (378)
..|+.++|+.|++....+++- ++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 357899999999998877762 5677778876654
No 352
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=80.55 E-value=2.3 Score=31.72 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=24.3
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~ 116 (378)
..|+.|||+.|++....+++- ++.+-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 468899999999988777653 566666666544
No 353
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=80.36 E-value=8.6 Score=26.56 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=39.6
Q ss_pred EcCCCCccHH---HHHHHh-ccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCC-CCCHHHHHHHHH
Q 017071 188 LHDLEGMESE---ELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRH-QFTRLAIANFVT 261 (378)
Q Consensus 188 ~~~~~~~~~~---~~~~~a-~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g-~~~~~~l~~fi~ 261 (378)
+.+.|..... ...+++ .+..++.+....+..-..+||+.. .|++++ + ....|.| --+.++|.+||+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~~~~~ygv~~---vPalvI----n-g~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELGIEVEIIDIEDFEEIEKYGVMS---VPALVI----N-GKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTHHHHHHTT-SS---SSEEEE----T-TEEEEESS--HHHHHHHHHH
T ss_pred eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCHHHHHHcCCCC---CCEEEE----C-CEEEEEecCCCHHHHHHHhC
Confidence 5666876443 334444 333334444445555559999986 899976 2 2467888 456689999875
No 354
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=80.31 E-value=4.6 Score=31.41 Aligned_cols=25 Identities=4% Similarity=-0.140 Sum_probs=19.1
Q ss_pred HHHHHhhccCCeEEEEEEcCCCCcc
Q 017071 171 DEAERILTVESKLVLGFLHDLEGME 195 (378)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~ 195 (378)
+.++...+.+++++|.|+++||.+.
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~C 38 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPHS 38 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHhH
Confidence 3445555668899999999999874
No 355
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=79.64 E-value=4.2 Score=31.64 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=35.6
Q ss_pred CcHHHHHHcCCCCCcEEEEEeCCe-----------EeeeeeCCCCHHHHHHHHHHH
Q 017071 115 LEKDLAKEYNILAYPTLYLFVAGV-----------RQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 115 ~~~~~~~~~~v~~~Pt~~~~~~g~-----------~~~~~~g~~~~~~l~~~i~~~ 159 (378)
-++.+-++|+|+.+|++++.+++. ......|..+.+.-.+.+.+.
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 468999999999999999998663 345667888887777777644
No 356
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=79.60 E-value=2.7 Score=31.69 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=33.2
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH----HHHHHcCCCCCcEEEEEe
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNILAYPTLYLFV 135 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~ 135 (378)
..|+.++|+.|++....+++- ++.|-.+|..+++ ++.+-.+..+.|..-+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~ 57 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN 57 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence 468899999999988877752 5677777776543 233333333445555555
No 357
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.29 E-value=26 Score=31.49 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=70.9
Q ss_pred HHHHHHHHHhc----CCcccCCCHHHHHHhhcc--CCeEEEEEEcC--------CCCccHHHHHHHh-ccCC--------
Q 017071 151 VISAWVREKMT----LGTYSITTTDEAERILTV--ESKLVLGFLHD--------LEGMESEELAAAS-KLHS-------- 207 (378)
Q Consensus 151 ~l~~~i~~~~~----~~~~~i~~~~~~~~~~~~--~~~~~v~f~~~--------~~~~~~~~~~~~a-~~~~-------- 207 (378)
+|.+-+.++.+ .++..+ +.+.+.++++. .+..+|.+++. -|-++.++|..+| ..+.
T Consensus 25 ~ls~kv~~L~~~ts~~~VI~~-n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~t 103 (331)
T KOG2603|consen 25 DLSNKVVQLMSWTSESGVIRM-NDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGT 103 (331)
T ss_pred HHHHHHHHHHhccCCCCeEEe-cCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcc
Confidence 35666655553 556666 45788888876 34555555532 2334667777765 3222
Q ss_pred ceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecCCC---CccccCCC---CCHHHHHHHHHhcCCCceE
Q 017071 208 DVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAG---KATPFRHQ---FTRLAIANFVTHTKHPLVV 269 (378)
Q Consensus 208 ~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~~~---~~~~y~g~---~~~~~l~~fi~~~~~P~~~ 269 (378)
++-|..+ ..+++.+.+++++ .|++++|.+..+ +...+++. ...+.+.+|+.+...-.+.
T Consensus 104 klFF~~Vd~~e~p~~Fq~l~ln~---~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 104 KLFFCMVDYDESPQVFQQLNLNN---VPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred eEEEEEEeccccHHHHHHhcccC---CCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 2334433 5678899999997 899999976432 33333321 3589999999987544443
No 358
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=78.77 E-value=12 Score=29.03 Aligned_cols=19 Identities=11% Similarity=-0.213 Sum_probs=15.3
Q ss_pred CCeEEEEEEcCCCCccHHH
Q 017071 180 ESKLVLGFLHDLEGMESEE 198 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~ 198 (378)
+++++|.|+++||.+....
T Consensus 17 Gk~vll~F~atwC~~C~~~ 35 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAF 35 (132)
T ss_pred CCEEEEEEECCCCchHHHH
Confidence 5788999999999985543
No 359
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=78.56 E-value=9.8 Score=28.46 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=41.7
Q ss_pred CHHHHHHhhccCCeEEEEEEcCCCCc-----cHH-HHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEee
Q 017071 169 TTDEAERILTVESKLVLGFLHDLEGM-----ESE-ELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLH 238 (378)
Q Consensus 169 ~~~~~~~~~~~~~~~~v~f~~~~~~~-----~~~-~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~ 238 (378)
+.++++.++......++.|. ..+.. ... .+-++. .+.+....+.+ ....+..+||+.. +|++++++
T Consensus 15 d~~~ld~~l~~~~~~vlf~~-gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~---~PaLvf~R 90 (107)
T PF07449_consen 15 DADTLDAFLAAPGDAVLFFA-GDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRR---WPALVFFR 90 (107)
T ss_dssp -CCCHHHHHHCCSCEEEEES-S-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TS---SSEEEEEE
T ss_pred chhhHHHHHhCCCcEEEEEC-CCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCcc---CCeEEEEE
Confidence 35678888888777776444 32221 111 233443 34455555443 5678999999986 89999999
Q ss_pred cC
Q 017071 239 LE 240 (378)
Q Consensus 239 ~~ 240 (378)
.+
T Consensus 91 ~g 92 (107)
T PF07449_consen 91 DG 92 (107)
T ss_dssp TT
T ss_pred CC
Confidence 87
No 360
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=78.48 E-value=17 Score=32.02 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=48.1
Q ss_pred CeEEEEEEcCCCCccH---HHHHHHhccCCceeEEEE-------------ccHHHHhhcCCCCCCCCCeEEEeecCCCCc
Q 017071 181 SKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT-------------TSADVAEFFHIHPKSKRPALIFLHLEAGKA 244 (378)
Q Consensus 181 ~~~~v~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~-------------~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~ 244 (378)
+.-++.||.+.|.... ..+...+...+=-.+..+ .+...++++|++. .|++++..+...+.
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~---~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY---FPALYLVNPKSQKM 227 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCcc---CceEEEEECCCCcE
Confidence 4667889998887543 333344432221122222 2355889999986 89999999875554
Q ss_pred ccc-CCCCCHHHHHHHH
Q 017071 245 TPF-RHQFTRLAIANFV 260 (378)
Q Consensus 245 ~~y-~g~~~~~~l~~fi 260 (378)
... .|-++.++|.+=|
T Consensus 228 ~pv~~G~iS~deL~~Ri 244 (256)
T TIGR02739 228 SPLAYGFISQDELKERI 244 (256)
T ss_pred EEEeeccCCHHHHHHHH
Confidence 444 4778887775543
No 361
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=77.91 E-value=32 Score=27.04 Aligned_cols=91 Identities=10% Similarity=0.053 Sum_probs=62.2
Q ss_pred hcCCCcEEEEEecCCChhHHhhHHHH---HHHHHHhcCCcEEEEEeCcCcH------------------HHHHHcCCCCC
Q 017071 70 MGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEK------------------DLAKEYNILAY 128 (378)
Q Consensus 70 ~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~~~------------------~~~~~~~v~~~ 128 (378)
..+.|+.+|+...+--..+..+-... +.+.+-++.++.+-.-|++... ..++.++...+
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~f 97 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQL 97 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCC
Confidence 34579999999988764333333222 2233334457778777776542 24566789999
Q ss_pred cEEEEEe--CC--eEeeeeeCCCCHHHHHHHHHHHh
Q 017071 129 PTLYLFV--AG--VRQFQFFGERTRDVISAWVREKM 160 (378)
Q Consensus 129 Pt~~~~~--~g--~~~~~~~g~~~~~~l~~~i~~~~ 160 (378)
|.+.++- .+ .++.+..|..+++++.+-+....
T Consensus 98 P~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 98 PAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 9998886 22 46778999999999998887654
No 362
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=77.87 E-value=15 Score=24.46 Aligned_cols=66 Identities=9% Similarity=0.060 Sum_probs=39.8
Q ss_pred EEEEEcCCCCccHHHHHHHhccCCceeEEEE---ccHH----HHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHH
Q 017071 184 VLGFLHDLEGMESEELAAASKLHSDVNFYQT---TSAD----VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAI 256 (378)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~~~~~~f~~~---~~~~----~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l 256 (378)
+..|+.+||.+.......+.... +.+... .++. +.+.+++.. .|++++. + . ...| .+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~--i~~~~vdi~~~~~~~~~~~~~~~~~~---vP~~~~~--~--~--~~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKG--IAFEEIDVEKDSAAREEVLKVLGQRG---VPVIVIG--H--K--IIVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCC--CeEEEEeccCCHHHHHHHHHHhCCCc---ccEEEEC--C--E--EEee-CCHHHH
Confidence 45688999987665544443332 333322 2332 456688775 8999874 2 2 2555 477889
Q ss_pred HHHHH
Q 017071 257 ANFVT 261 (378)
Q Consensus 257 ~~fi~ 261 (378)
.+||+
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88874
No 363
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=77.52 E-value=11 Score=28.65 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=48.8
Q ss_pred hhccCCeEEEEEEcCCC----CccHHHHHH--Hhc-cCCceeEEE-E----ccHHHHhhcCCCCCCCCCeEEEeecCCCC
Q 017071 176 ILTVESKLVLGFLHDLE----GMESEELAA--ASK-LHSDVNFYQ-T----TSADVAEFFHIHPKSKRPALIFLHLEAGK 243 (378)
Q Consensus 176 ~~~~~~~~~v~f~~~~~----~~~~~~~~~--~a~-~~~~~~f~~-~----~~~~~~~~~~i~~~~~~P~i~~~~~~~~~ 243 (378)
..++.+..+|.++++.+ ......+.. +.+ +..++-+.. . ....++..+++.. +|+++++-..+++
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~---~P~~~~l~~~~~~ 89 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERT---YPFLAMIMLKDNR 89 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCC---CCEEEEEEecCCc
Confidence 33446677777777633 222223321 112 222333322 1 2345888899986 9999999644333
Q ss_pred ---ccccCCCCCHHHHHHHHHh
Q 017071 244 ---ATPFRHQFTRLAIANFVTH 262 (378)
Q Consensus 244 ---~~~y~g~~~~~~l~~fi~~ 262 (378)
-....|..+.+++..-++.
T Consensus 90 ~~vv~~i~G~~~~~~ll~~L~~ 111 (116)
T cd02991 90 MTIVGRLEGLIQPEDLINRLTF 111 (116)
T ss_pred eEEEEEEeCCCCHHHHHHHHHH
Confidence 3356899999888877764
No 364
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=77.45 E-value=16 Score=30.51 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=26.1
Q ss_pred cHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCC-CHHHHHHHHHh
Q 017071 216 SADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF-TRLAIANFVTH 262 (378)
Q Consensus 216 ~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~-~~~~l~~fi~~ 262 (378)
+.++.+.|++.. .|+.+++.+++ .+.+.|.. +.+.+.++++.
T Consensus 135 ~~~i~~~y~v~~---~P~~~lID~~G--~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 135 SAEIGMAFQVGK---IPYGVLLDQDG--KIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred hhHHHHhccCCc---cceEEEECCCC--eEEEccCCCCHHHHHHHHHH
Confidence 456777788765 79887776543 33344543 44677777764
No 365
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=76.43 E-value=10 Score=30.15 Aligned_cols=21 Identities=14% Similarity=-0.167 Sum_probs=16.2
Q ss_pred cCCeEEEEEEcCCCCccHHHH
Q 017071 179 VESKLVLGFLHDLEGMESEEL 199 (378)
Q Consensus 179 ~~~~~~v~f~~~~~~~~~~~~ 199 (378)
.+++++|.|+++||.+..+..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~ 44 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFA 44 (146)
T ss_pred CCCEEEEEEECCCChhHHHHH
Confidence 457899999999998855544
No 366
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=76.21 E-value=28 Score=28.49 Aligned_cols=87 Identities=16% Similarity=0.301 Sum_probs=55.4
Q ss_pred cCCCcEEEEEe-cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCc----------------------------CcHHHH
Q 017071 71 GKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY----------------------------LEKDLA 120 (378)
Q Consensus 71 ~~~~~~lv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~----------------------------~~~~~~ 120 (378)
..++.+++.|| .++--.|-.+.-.|...+.+++. +..++.+.+| .+.++|
T Consensus 31 y~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Is 110 (196)
T KOG0852|consen 31 YKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEIS 110 (196)
T ss_pred hcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhH
Confidence 46788888888 45666777777777777777776 5555555443 356899
Q ss_pred HHcCC----CCCc--EEEEEe-CCeEeeee-----eCCCCHHHHHHHHHH
Q 017071 121 KEYNI----LAYP--TLYLFV-AGVRQFQF-----FGERTRDVISAWVRE 158 (378)
Q Consensus 121 ~~~~v----~~~P--t~~~~~-~g~~~~~~-----~g~~~~~~l~~~i~~ 158 (378)
+.||| .|.+ .+++++ +| ++.++ .-.++.++....++.
T Consensus 111 rdyGvL~~~~G~~lRglfIId~~g-i~R~it~NDlpvgRSVdE~lRLvqA 159 (196)
T KOG0852|consen 111 RDYGVLKEDEGIALRGLFIIDPDG-ILRQITINDLPVGRSVDETLRLVQA 159 (196)
T ss_pred HhcCceecCCCcceeeeEEEcccc-ceEEeeecccCCCccHHHHHHHHHH
Confidence 99997 3444 456666 66 33222 124677776666653
No 367
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=75.74 E-value=9.6 Score=24.88 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=32.2
Q ss_pred EEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcH--HHHHHcCCCCCcEEEE
Q 017071 79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK--DLAKEYNILAYPTLYL 133 (378)
Q Consensus 79 ~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~ 133 (378)
.|+.++|+.|++.+-.+....- .+....++..... ++.+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5778999999988777766522 3444555543322 2445566778897653
No 368
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=75.01 E-value=7.7 Score=26.14 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=33.4
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC----cHHHHHHcCCCCCcEEEE
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYL 133 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~ 133 (378)
..|+.++|+.|++.+-.+....- .+....++... .+++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 35778899999998887765422 34445555422 344555556667899854
No 369
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=74.86 E-value=13 Score=28.87 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=35.1
Q ss_pred CCeEEEEEEcCCCCcc---HHHHHHHhccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEEEeecC
Q 017071 180 ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE 240 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~~~~~~ 240 (378)
.+..++.+..+||+.. .+.+..+++...++.+... .+.++.+.|--.+....|+++++..+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 4567777999999864 4556677766555555433 46677777655444569999998754
No 370
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=74.84 E-value=60 Score=28.73 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=45.1
Q ss_pred CCCcEEcChhcHHHHhcCCCcEEEEEecCC------ChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHH----cC
Q 017071 55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANW------CYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE----YN 124 (378)
Q Consensus 55 ~~~v~~l~~~~~~~~~~~~~~~lv~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~ 124 (378)
.....+|++.+-+-+-.=.+++-|.+|.+- -..=+.....+++.++.-++++.+-.||-+.+++.+++ +|
T Consensus 6 ~~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 6 ANKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred CCCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 445667777776654444567777777664 22222333333333333333899999999777776665 88
Q ss_pred CCCC
Q 017071 125 ILAY 128 (378)
Q Consensus 125 v~~~ 128 (378)
|+..
T Consensus 86 i~~~ 89 (271)
T PF09822_consen 86 IQPV 89 (271)
T ss_pred CCcc
Confidence 8763
No 371
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=73.97 E-value=5.8 Score=33.99 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=37.6
Q ss_pred cCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC----CcEEEEEeCc
Q 017071 71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG----EADLVMVDAY 114 (378)
Q Consensus 71 ~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~~vd~~ 114 (378)
..|.+++|-+-..+|..|..-...++.|..++.. +|.|+.||-.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3678999999999999999999999999887765 7888888843
No 372
>PRK12559 transcriptional regulator Spx; Provisional
Probab=72.93 E-value=6.2 Score=30.78 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=24.1
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~ 116 (378)
+..|..++|+.|++....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCC
Confidence 4568899999999977666543 566666665544
No 373
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=72.26 E-value=1.5 Score=31.02 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=42.3
Q ss_pred EecCCChhHHhhHHHHHHHHHHhc-CCcEEEEEeCcCcHHHHHHcCCCCCcEEE
Q 017071 80 FYANWCYWSKKLAPEFAAAAKMLK-GEADLVMVDAYLEKDLAKEYNILAYPTLY 132 (378)
Q Consensus 80 F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 132 (378)
|-|..-+.+......+..+.+.+- +.+.+-.||+.+++++++.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 334444566777788888877644 48999999999999999999999999964
No 374
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=71.78 E-value=39 Score=25.18 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=66.4
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcC--CcEEEEEeCcCcHHHH----HHcCCC-CCcEEEEEe---CCeEeee
Q 017071 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLA----KEYNIL-AYPTLYLFV---AGVRQFQ 142 (378)
Q Consensus 73 ~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~----~~~~v~-~~Pt~~~~~---~g~~~~~ 142 (378)
+...+|-|--+--+.-.++.+.+.++|+.+.. ++.++=||-++-+-+. +.|+|. .-|.+=+++ +.....+
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 46678888888889999999999999999877 8999999998877654 356653 249888887 2224444
Q ss_pred eeCC---CCHHHHHHHHHHH
Q 017071 143 FFGE---RTRDVISAWVREK 159 (378)
Q Consensus 143 ~~g~---~~~~~l~~~i~~~ 159 (378)
..+. .+.+.|..||+..
T Consensus 100 m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cccccccCcHHHHHHHHHhh
Confidence 4443 7889999999764
No 375
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=71.71 E-value=14 Score=27.89 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeC
Q 017071 90 KLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136 (378)
Q Consensus 90 ~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 136 (378)
.+.+....+.+.....-.. .+..-++.+-++|+|+.+|++++.++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5555555555544331111 23334689999999999999999987
No 376
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=70.68 E-value=20 Score=29.97 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=67.0
Q ss_pred CCcccCCCHHHHHHhhcc-CCeEEEEEEcCC----CCccHHHHHHHhccCCceeEEEEccHHHHhhcCCCCCCCCCeEEE
Q 017071 162 LGTYSITTTDEAERILTV-ESKLVLGFLHDL----EGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF 236 (378)
Q Consensus 162 ~~~~~i~~~~~~~~~~~~-~~~~~v~f~~~~----~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~ 236 (378)
..|..|+..+-..+..+. ...+||.-.-.. |.-....+..+|.....++|..+........|--.+ .|||++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpNYPe~n---lPTl~V 167 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPNYPESN---LPTLLV 167 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCCCcccC---CCeEEE
Confidence 567778777766666655 456665544332 233455566777777889999876666666665554 899999
Q ss_pred eecCCCCc-----cccCCC-CCHHHHHHHHHhcCCCceEEec
Q 017071 237 LHLEAGKA-----TPFRHQ-FTRLAIANFVTHTKHPLVVTLT 272 (378)
Q Consensus 237 ~~~~~~~~-----~~y~g~-~~~~~l~~fi~~~~~P~~~~l~ 272 (378)
|..++-+. ..+-|. .+.+++..++-+.. |.+.+.+
T Consensus 168 Y~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag-a~l~d~~ 208 (240)
T KOG3170|consen 168 YHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG-AALTDGD 208 (240)
T ss_pred eecchHHhheehhhhhcCCcCCHHHHHHHHHhcc-ccccccc
Confidence 99875221 223333 46678877776543 4555554
No 377
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=70.59 E-value=45 Score=25.40 Aligned_cols=89 Identities=16% Similarity=0.086 Sum_probs=57.3
Q ss_pred HhcCCCcEEEEEecC--CChhHHhhHHHHHHHHHHhcC-CcEEEEEeCc-Cc-----------HHHHHHcCCCC-CcEEE
Q 017071 69 FMGKNRNVMVMFYAN--WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-LE-----------KDLAKEYNILA-YPTLY 132 (378)
Q Consensus 69 ~~~~~~~~lv~F~a~--wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~-~~-----------~~~~~~~~v~~-~Pt~~ 132 (378)
...++++++| +|| .-+.-++....+.+....+.. ++.++.+--+ .. ..+-++|++.. .-+++
T Consensus 6 ~~w~~R~lvv--~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~v 83 (118)
T PF13778_consen 6 FRWKNRLLVV--FAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVV 83 (118)
T ss_pred hcCcCceEEE--ECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEE
Confidence 3344554443 454 445566677777775556655 5666655322 22 26788888653 23556
Q ss_pred EEe-CCeEeeeeeCCCCHHHHHHHHHHH
Q 017071 133 LFV-AGVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 133 ~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
++. +|.+..++.++.+.+.|-+.|..+
T Consensus 84 LiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 84 LIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 665 898888999999999999888654
No 378
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=70.27 E-value=9.7 Score=28.84 Aligned_cols=33 Identities=6% Similarity=0.109 Sum_probs=24.5
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~ 116 (378)
..|+.++|+.|++....+++. ++.+-.+|..++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 467889999999988877763 566667776554
No 379
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=69.77 E-value=30 Score=23.11 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=40.6
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc-HHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHH
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (378)
..|+.++|+.|++..-.++...- .+....+|.... +++.+......+|++. .+|.. ..+...|.+|+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi----~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~------l~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV----SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV------LYESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC----ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE------EEcHHHHHHHH
Confidence 46788999999998776654322 334444554432 3455555566789763 44422 23556677766
Q ss_pred HH
Q 017071 157 RE 158 (378)
Q Consensus 157 ~~ 158 (378)
.+
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 54
No 380
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=69.56 E-value=6.1 Score=33.13 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.5
Q ss_pred cHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHH
Q 017071 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 116 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (378)
+...+.+.||.|+||+++ +|+ ....|..+.+.+.+.|
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCe--EeecCCCCHHHHHHHh
Confidence 345678899999999888 654 3467999998887655
No 381
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=65.50 E-value=18 Score=31.62 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=47.6
Q ss_pred CeEEEEEEcCCCCcc---HHHHHHHhccCCceeEEEE-------------ccHHHHhhcCCCCCCCCCeEEEeecCCCCc
Q 017071 181 SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT-------------TSADVAEFFHIHPKSKRPALIFLHLEAGKA 244 (378)
Q Consensus 181 ~~~~v~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~-------------~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~ 244 (378)
+.-++.||.+.|... ...+...+...+--.+..+ .+...+++++++. +|++++..+...+.
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~---~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY---FPALMLVDPKSGSV 220 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcc---cceEEEEECCCCcE
Confidence 356778999888764 3344444432222112221 2445678899986 89999999876555
Q ss_pred ccc-CCCCCHHHHHHHH
Q 017071 245 TPF-RHQFTRLAIANFV 260 (378)
Q Consensus 245 ~~y-~g~~~~~~l~~fi 260 (378)
... .|-++.++|.+=|
T Consensus 221 ~pv~~G~iS~deL~~Ri 237 (248)
T PRK13703 221 RPLSYGFITQDDLAKRF 237 (248)
T ss_pred EEEeeccCCHHHHHHHH
Confidence 444 4778888775543
No 382
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=65.25 E-value=48 Score=27.58 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=28.2
Q ss_pred ccHHHHhhcCCCCCCCCCeE-EEeecCCCCccccCCCCCHHHHHHHH
Q 017071 215 TSADVAEFFHIHPKSKRPAL-IFLHLEAGKATPFRHQFTRLAIANFV 260 (378)
Q Consensus 215 ~~~~~~~~~~i~~~~~~P~i-~~~~~~~~~~~~y~g~~~~~~l~~fi 260 (378)
.+..+...|++.. .|+- +++.+.+.-...+.|..+.+++.+.+
T Consensus 133 ~~g~v~~~~gv~~---~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 133 DKGAVKNAWQLNS---EDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CcchHHHhcCCCC---CCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 3444566777765 6655 56666655666778888887776644
No 383
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=65.23 E-value=36 Score=26.20 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=38.0
Q ss_pred HHHHHHHHHHh---cC-CcEEEEEeCcCcHH----------HHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHH
Q 017071 92 APEFAAAAKML---KG-EADLVMVDAYLEKD----------LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR 157 (378)
Q Consensus 92 ~p~~~~~~~~~---~~-~~~~~~vd~~~~~~----------~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~ 157 (378)
.|++.+++..+ ++ ++.+.+-|..+++. +.++-|...+|-+++ +| .+...-.+.+.++|.+|+.
T Consensus 23 d~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dG-eiv~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 23 DPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DG-EIVKTGRYPTNEELAEWLG 99 (123)
T ss_dssp -HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TT-EEEEESS---HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CC-EEEEecCCCCHHHHHHHhC
Confidence 44444444333 22 89999999987643 445668899998766 88 4555555679999999986
Q ss_pred HHh
Q 017071 158 EKM 160 (378)
Q Consensus 158 ~~~ 160 (378)
-..
T Consensus 100 i~~ 102 (123)
T PF06953_consen 100 ISF 102 (123)
T ss_dssp --G
T ss_pred CCc
Confidence 444
No 384
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=65.14 E-value=15 Score=24.87 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=32.8
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC----cHHHHHHcCCCCCcEEE
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLY 132 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 132 (378)
..|+.++|++|++.+-.+....- .+....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 46789999999977766655422 34455555432 24566655566799984
No 385
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=64.57 E-value=13 Score=26.07 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=19.8
Q ss_pred HHHHHhhccCCeEEEEEEcCCCCcc
Q 017071 171 DEAERILTVESKLVLGFLHDLEGME 195 (378)
Q Consensus 171 ~~~~~~~~~~~~~~v~f~~~~~~~~ 195 (378)
+.+.+..+.+++++|.|+++||...
T Consensus 8 ~al~~A~~~~kpvlv~f~a~wC~~C 32 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFGADWCPPC 32 (82)
T ss_dssp HHHHHHHHHTSEEEEEEETTTTHHH
T ss_pred HHHHHHHHcCCCEEEEEECCCCHhH
Confidence 4455666779999999999999864
No 386
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=62.41 E-value=12 Score=30.97 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=26.4
Q ss_pred HHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHH
Q 017071 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 117 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (378)
...+.++||.|+||+++ +|+ .+.|....+.+...|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 45677899999999988 674 556887777776654
No 387
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=61.11 E-value=15 Score=28.63 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=23.7
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~ 116 (378)
+..|+.++|+.|++....+++- ++.|-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCCeEEEECCCC
Confidence 3467889999999977665542 566666776543
No 388
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.90 E-value=72 Score=28.62 Aligned_cols=158 Identities=14% Similarity=0.046 Sum_probs=87.7
Q ss_pred eCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHHHHhcCCcccCCCHHHHHHhh----ccCC-eEEEE
Q 017071 112 DAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL----TVES-KLVLG 186 (378)
Q Consensus 112 d~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~-~~~v~ 186 (378)
.|+-.+++.++++|..+|-.+.+++... . -....+.+++..-....-..+-+.-.+.+++.+.. +... .++..
T Consensus 10 t~dl~~~~~~~~~I~vlPL~V~~~g~~y-~-D~~~l~~~~~~~~~~~~~~~p~TSqPs~~~~~~~~~~l~~~g~~~vi~i 87 (282)
T COG1307 10 TADLPPELAEKLDITVLPLSVIIDGESY-F-DGVELSPDQFYYEMAEKGELPKTSQPSPGEFEELFEKLLQKGYDEVISI 87 (282)
T ss_pred CCCCCHHHHHhCCeEEEeEEEEECCEEe-e-ccccCCHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhCCCcEEEEE
Confidence 3566789999999999999888876522 2 12346777654444333333333334445444433 3333 45555
Q ss_pred EEcCCCCccHHHHHHHhccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhcCCC
Q 017071 187 FLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHP 266 (378)
Q Consensus 187 f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~P 266 (378)
..++.-+..++.-..++++..+..+....+..+.-..+.- +.+- ....-+|. +.+++.+|+++..-.
T Consensus 88 ~iSs~LSgty~~a~~a~~~~~~~~v~viDS~~~s~~~g~~---------v~~a---~~l~~~G~-s~~ei~~~l~~~~~~ 154 (282)
T COG1307 88 HISSGLSGTYQSAQLAAELVEGAKVHVIDSKSVSMGLGFL---------VLEA---AELAKAGK-SFEEILKKLEEIREK 154 (282)
T ss_pred EcCCCccHHHHHHHHHHHhccCceEEEEcCcchhhHHHHH---------HHHH---HHHHHcCC-CHHHHHHHHHHHHhh
Confidence 5566556666663333366665555554443332222211 0000 01111233 578899999998877
Q ss_pred ceEEecccchhhhhccch
Q 017071 267 LVVTLTIHNAQFVFQDPR 284 (378)
Q Consensus 267 ~~~~l~~~~~~~~~~~~~ 284 (378)
....+.-++...+...++
T Consensus 155 t~~~~~v~~L~~L~kgGR 172 (282)
T COG1307 155 TKAYFVVDDLDNLVKGGR 172 (282)
T ss_pred cEEEEEECchhHHHhCCC
Confidence 777777777666666664
No 389
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=60.06 E-value=64 Score=23.44 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=44.4
Q ss_pred HHHHhhcc--CCeEEEEEEcC--CCCccHHHHHHHhccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecCCCCcccc
Q 017071 172 EAERILTV--ESKLVLGFLHD--LEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPF 247 (378)
Q Consensus 172 ~~~~~~~~--~~~~~v~f~~~--~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y 247 (378)
++...++. +++.++.|.++ .|....+...++|.+.+++.+-.....+ . .|++.+.+.+....+.|
T Consensus 9 qL~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-------~----~P~~~i~~~~~~~gIrF 77 (94)
T cd02974 9 QLKAYLERLENPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-------R----KPSFSINRPGEDTGIRF 77 (94)
T ss_pred HHHHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-------C----CCEEEEecCCCcccEEE
Confidence 44444433 44555556543 2333444455677888887774322111 1 59999887764456888
Q ss_pred CCCCCHHHHHHHHH
Q 017071 248 RHQFTRLAIANFVT 261 (378)
Q Consensus 248 ~g~~~~~~l~~fi~ 261 (378)
.|--.-.++..||.
T Consensus 78 ~GiP~GhEf~Slil 91 (94)
T cd02974 78 AGIPMGHEFTSLVL 91 (94)
T ss_pred EecCCchhHHHHHH
Confidence 77544455666653
No 390
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=59.02 E-value=41 Score=23.48 Aligned_cols=74 Identities=7% Similarity=0.100 Sum_probs=42.4
Q ss_pred EEEEEcCCCCccHHHHHHHhcc--CCceeEEE---EccHHHHhhcCCCCCCCCCeEEEeecCC-CCccccCCCCCHHHHH
Q 017071 184 VLGFLHDLEGMESEELAAASKL--HSDVNFYQ---TTSADVAEFFHIHPKSKRPALIFLHLEA-GKATPFRHQFTRLAIA 257 (378)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~--~~~~~f~~---~~~~~~~~~~~i~~~~~~P~i~~~~~~~-~~~~~y~g~~~~~~l~ 257 (378)
++.|..+.|.-.-..-..+... ...+.+.. ..++++..+|+.. .|-+.+-.... .......+.++.+.|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~~----IPVl~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGYR----IPVLHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCTS----TSEEEETT-GGGCTSEEEESSB-HHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcCC----CCEEEEcCcccccccceeCCCCCHHHHH
Confidence 4567788887544333333322 23333332 3778899999986 79766433111 1133445778999999
Q ss_pred HHHH
Q 017071 258 NFVT 261 (378)
Q Consensus 258 ~fi~ 261 (378)
+||+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9985
No 391
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=58.44 E-value=16 Score=33.04 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=52.3
Q ss_pred ChhHHhhHHHHHHHHH----HhcC---CcEEEEEeCcCcH---HHHHHcCCCC--CcEEEEEeCCeEeeeeeCCCCHHHH
Q 017071 85 CYWSKKLAPEFAAAAK----MLKG---EADLVMVDAYLEK---DLAKEYNILA--YPTLYLFVAGVRQFQFFGERTRDVI 152 (378)
Q Consensus 85 C~~C~~~~p~~~~~~~----~~~~---~~~~~~vd~~~~~---~~~~~~~v~~--~Pt~~~~~~g~~~~~~~g~~~~~~l 152 (378)
||.|-+..-.+.+..+ .+.. .+.++.+-|--|. ..-..+||.+ -|...+|.+|+.+.+..+..-.+++
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 8888776555444433 3333 4777777775442 2234567654 5899999999989998888888888
Q ss_pred HHHHHHHh
Q 017071 153 SAWVREKM 160 (378)
Q Consensus 153 ~~~i~~~~ 160 (378)
...++++.
T Consensus 344 ~~~i~~~~ 351 (361)
T COG0821 344 EALIEAYA 351 (361)
T ss_pred HHHHHHHH
Confidence 88887765
No 392
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=56.78 E-value=79 Score=25.49 Aligned_cols=86 Identities=10% Similarity=0.079 Sum_probs=51.6
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHH-hcC-C-cEEEEEeCcC-----------------------------cHHH
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKM-LKG-E-ADLVMVDAYL-----------------------------EKDL 119 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~-~~~-~-~~~~~vd~~~-----------------------------~~~~ 119 (378)
.+|+-+|..-|---..-..-.|..+.+.+. ++. + =....||.++ +..+
T Consensus 36 ~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~ 115 (160)
T PF09695_consen 36 PGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVV 115 (160)
T ss_pred CCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCce
Confidence 567666666655545555556666666544 333 1 1233344432 3334
Q ss_pred HHHcCCCCC-cEEEEEe-CCeEeeeeeCCCCHHHHHHHHH
Q 017071 120 AKEYNILAY-PTLYLFV-AGVRQFQFFGERTRDVISAWVR 157 (378)
Q Consensus 120 ~~~~~v~~~-Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~ 157 (378)
.+.++...- -++++++ +|++.+...|.++.+++.+.|.
T Consensus 116 ~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 116 RKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred eccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 444444322 3566676 8988899999999999998875
No 393
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=54.86 E-value=35 Score=24.26 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=33.0
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCc-HHHHHHcCCCCCcEEEE
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-KDLAKEYNILAYPTLYL 133 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~ 133 (378)
+..|+.+.|++|++.+-.+....- .+....++.... ..+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 455678889999987665554321 455556665443 33555556677899863
No 394
>PTZ00056 glutathione peroxidase; Provisional
Probab=54.61 E-value=70 Score=26.93 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=15.2
Q ss_pred CCeEEEEEEcCCCCccHHHHH
Q 017071 180 ESKLVLGFLHDLEGMESEELA 200 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~~~~~~~ 200 (378)
+++++|.|+++||.+....+.
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p 59 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVD 59 (199)
T ss_pred CCEEEEEEECCCCCChHHHHH
Confidence 467888888999987654443
No 395
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=52.56 E-value=70 Score=24.31 Aligned_cols=17 Identities=12% Similarity=-0.150 Sum_probs=11.7
Q ss_pred CCeEEEEEEcCCCCccH
Q 017071 180 ESKLVLGFLHDLEGMES 196 (378)
Q Consensus 180 ~~~~~v~f~~~~~~~~~ 196 (378)
.++++|.|++.||.+..
T Consensus 23 gk~vvl~F~a~~C~~C~ 39 (126)
T cd03012 23 GKVVLLDFWTYCCINCL 39 (126)
T ss_pred CCEEEEEEECCCCccHH
Confidence 46777778888877533
No 396
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=50.98 E-value=22 Score=29.49 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=18.3
Q ss_pred HHHHHHcCCCCCcEEEEEeCCe
Q 017071 117 KDLAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 117 ~~~~~~~~v~~~Pt~~~~~~g~ 138 (378)
.+.+.++||.|+||+++.+++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 4567789999999999998664
No 397
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=50.97 E-value=22 Score=29.44 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=24.9
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcC
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKG 104 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~ 104 (378)
+..|+-+.|+.|-...+.+.++.+.++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 5678899999999999999999999843
No 398
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=50.29 E-value=55 Score=29.21 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=83.7
Q ss_pred cCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeC-CCCHHHHHHHHHHHhcCCcccCCCHHHHHHhhcc----C-CeEEEEE
Q 017071 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVREKMTLGTYSITTTDEAERILTV----E-SKLVLGF 187 (378)
Q Consensus 114 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~----~-~~~~v~f 187 (378)
+-.++..++++|.-+|-.+.+++. . -.+| ..+.+++.+.+.+.-..+-+.-.+..++.++.+. . +.+++.-
T Consensus 11 dl~~~~~~~~~i~vvPl~i~~~~~-~--y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~ 87 (280)
T PF02645_consen 11 DLPPELAEEYGIYVVPLNIIIDGK-E--YRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVIT 87 (280)
T ss_dssp ---HHHHHHTTEEEE--EEEETTE-E--EETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCHHHHHhCCeEEEeEEEecCCe-E--EecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEe
Confidence 334688999999999998888752 2 1223 6899999999966543333444456655554432 3 4455555
Q ss_pred EcCCCCccHHHHHHHhccCCceeEEEEccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhcCCCc
Q 017071 188 LHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPL 267 (378)
Q Consensus 188 ~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~~P~ 267 (378)
.++.-+..++....+++...+.++....+..+.-..+. ++.+- ....-.| .+.+++.+++++.+.-.
T Consensus 88 iSs~LSgty~~a~~aa~~~~~~~i~ViDS~~~s~g~g~---------lv~~a---~~l~~~G-~s~~ei~~~l~~~~~~~ 154 (280)
T PF02645_consen 88 ISSGLSGTYNSARLAAKMLPDIKIHVIDSKSVSAGQGL---------LVLEA---AKLIEQG-KSFEEIVEKLEELRERT 154 (280)
T ss_dssp S-TTT-THHHHHHHHHHHHTTTEEEEEE-SS-HHHHHH---------HHHHH---HHHHHTT---HHHHHHHHHHHHHTE
T ss_pred CCcchhhHHHHHHHHHhhcCcCEEEEEeCCCcchhhhH---------HHHHH---HHHHHcC-CCHHHHHHHHHHHHhhc
Confidence 56656667777777774434445544433222221111 00000 0001122 37899999999877677
Q ss_pred eEEecccchhhhhccch
Q 017071 268 VVTLTIHNAQFVFQDPR 284 (378)
Q Consensus 268 ~~~l~~~~~~~~~~~~~ 284 (378)
...+..+++..+..+++
T Consensus 155 ~~~f~~~~L~~L~kgGR 171 (280)
T PF02645_consen 155 RTYFVVDDLKYLRKGGR 171 (280)
T ss_dssp EEEEEES-SHHHHHCTS
T ss_pred eEEEEechHHHHHHCCC
Confidence 77777777777766665
No 399
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=50.18 E-value=36 Score=28.58 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=33.5
Q ss_pred cHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHHH
Q 017071 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158 (378)
Q Consensus 116 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 158 (378)
++.+-++|+|+.+|++++...+ ......|..+...-.+.+..
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~-~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ-GYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC-CCCEEEecccHHHHHHHHHh
Confidence 6889999999999999997643 45677888888777766654
No 400
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.14 E-value=1.4e+02 Score=24.18 Aligned_cols=39 Identities=10% Similarity=0.280 Sum_probs=30.0
Q ss_pred ccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHH
Q 017071 215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAI 256 (378)
Q Consensus 215 ~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l 256 (378)
+.++++++|++.+ .|++++|...++.-...+|-+..+++
T Consensus 103 s~~ELa~kf~vrs---tPtfvFfdk~Gk~Il~lPGY~ppe~F 141 (182)
T COG2143 103 STEELAQKFAVRS---TPTFVFFDKTGKTILELPGYMPPEQF 141 (182)
T ss_pred cHHHHHHHhcccc---CceEEEEcCCCCEEEecCCCCCHHHH
Confidence 4568999999986 89999998776555566787766543
No 401
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=49.23 E-value=29 Score=24.27 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCcEEEEEe-CCeEeeeee-CCCCHHHHHHHHHHHh
Q 017071 127 AYPTLYLFV-AGVRQFQFF-GERTRDVISAWVREKM 160 (378)
Q Consensus 127 ~~Pt~~~~~-~g~~~~~~~-g~~~~~~l~~~i~~~~ 160 (378)
.-|++++++ +|+...+.. ..++.+.+.+|+.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 359999999 887666654 4579999999987653
No 402
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=48.97 E-value=65 Score=22.08 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=38.2
Q ss_pred EEEEEcCCCCccHHHHHHHhccCCc--eeEEEEc---c-H----HHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCH
Q 017071 184 VLGFLHDLEGMESEELAAASKLHSD--VNFYQTT---S-A----DVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTR 253 (378)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~~~~--~~f~~~~---~-~----~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~ 253 (378)
++.|+.+||......-..+.++.-. +.+..+. + . .+.+.++... +|++.+ .+ .. .. ..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~---vP~v~i--~g--~~--ig---g~ 68 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRT---VPNIFI--NG--KF--IG---GC 68 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCC---CCeEEE--CC--EE--Ec---CH
Confidence 4678999998866655554443333 5555432 1 2 2555567764 898753 22 11 12 23
Q ss_pred HHHHHHHHhcC
Q 017071 254 LAIANFVTHTK 264 (378)
Q Consensus 254 ~~l~~fi~~~~ 264 (378)
+++.+..++..
T Consensus 69 ~~~~~~~~~g~ 79 (84)
T TIGR02180 69 SDLLALYKSGK 79 (84)
T ss_pred HHHHHHHHcCC
Confidence 66666666544
No 403
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=47.82 E-value=21 Score=32.76 Aligned_cols=75 Identities=11% Similarity=0.093 Sum_probs=45.5
Q ss_pred ChhHHhhHHHHHHHHHHhcC-------CcEEEEEeCcCcHH---HHHHcCCC-CCc-EEEEEeCCeEeeee-eCCCCHHH
Q 017071 85 CYWSKKLAPEFAAAAKMLKG-------EADLVMVDAYLEKD---LAKEYNIL-AYP-TLYLFVAGVRQFQF-FGERTRDV 151 (378)
Q Consensus 85 C~~C~~~~p~~~~~~~~~~~-------~~~~~~vd~~~~~~---~~~~~~v~-~~P-t~~~~~~g~~~~~~-~g~~~~~~ 151 (378)
||.|-+..=.+.+++++.+. .+.++.+-|--|.- --..+|+. +-| ...+|++|+.+.+. ....-.+.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 66666665555555554332 78999999976521 12356766 333 48889999998888 77777788
Q ss_pred HHHHHHHH
Q 017071 152 ISAWVREK 159 (378)
Q Consensus 152 l~~~i~~~ 159 (378)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88777664
No 404
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=47.81 E-value=29 Score=25.99 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=40.6
Q ss_pred EecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCC--CcEEEE-EeCCeEeeeeeCC
Q 017071 80 FYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA--YPTLYL-FVAGVRQFQFFGE 146 (378)
Q Consensus 80 F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt~~~-~~~g~~~~~~~g~ 146 (378)
||-.+|+-|......+.+... .+.+.|+.+......++.+.+++.. .-+.+. .++|+ ..|.|.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~--~~~~G~ 67 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE--RVYRGS 67 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC--EEEEcH
Confidence 688899999999998887722 2356676664455556667788752 444444 35774 344454
No 405
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=47.44 E-value=1.3e+02 Score=23.30 Aligned_cols=46 Identities=4% Similarity=0.023 Sum_probs=26.7
Q ss_pred cCCceeEEEEccHHHHhhcCCC--C----CCCCCeEEEeecCCCCccccCCC
Q 017071 205 LHSDVNFYQTTSADVAEFFHIH--P----KSKRPALIFLHLEAGKATPFRHQ 250 (378)
Q Consensus 205 ~~~~~~f~~~~~~~~~~~~~i~--~----~~~~P~i~~~~~~~~~~~~y~g~ 250 (378)
....+.+....+..+.+.|++. . ...+|+.+++..++.-.....|.
T Consensus 83 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 83 YGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp TTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred hCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCC
Confidence 3334555555667788888876 0 00379888887764333333444
No 406
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.41 E-value=2.4e+02 Score=26.31 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHH
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~ 151 (378)
++..-+=-|++-.|..|-..-..+.-++- ++.++.-..||..-.++-.+.-+|.++||+++ ||+.. -.|.++.++
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msv-lNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~f--g~GRmtlee 189 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSV-LNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEE 189 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHh-cCCCceeEEecchhhHhHHHhccceecceEEE--cchhh--cccceeHHH
Confidence 46667777888899999877777766554 44488888899777777777889999999866 66332 236677777
Q ss_pred HHHHHH
Q 017071 152 ISAWVR 157 (378)
Q Consensus 152 l~~~i~ 157 (378)
|..-|.
T Consensus 190 ilaki~ 195 (520)
T COG3634 190 ILAKID 195 (520)
T ss_pred HHHHhc
Confidence 765553
No 407
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=42.94 E-value=1.5e+02 Score=25.14 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=45.3
Q ss_pred CChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHHHHhcCC
Q 017071 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLG 163 (378)
Q Consensus 84 wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~ 163 (378)
.|+.|+++.-.+. .+.. .+.+-.||....++--++..-.+=|=++.++. .+..+.+.|..+|++.+.++
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~-------~~~tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKFDE-------KWVTDSDKIEEFLEEKLPPP 88 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEeCC-------ceeccHHHHHHHHHHhcCCC
Confidence 4888887766665 2211 67888899988877766655444444444442 12457889999999988544
No 408
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=40.76 E-value=45 Score=25.96 Aligned_cols=48 Identities=8% Similarity=-0.014 Sum_probs=32.6
Q ss_pred EEEEccHHHHhhcCCCCCCCCCeEEEeecCC----------CCccccCCCCCHHHHHHHHH
Q 017071 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEA----------GKATPFRHQFTRLAIANFVT 261 (378)
Q Consensus 211 f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~----------~~~~~y~g~~~~~~l~~fi~ 261 (378)
....-++.+.++|+|+. .|++++.+.+. ..+..-.|+.+.+.-.+.+.
T Consensus 55 ~~v~IdP~lF~~f~I~~---VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITA---VPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred CcEEEChHHHhhcCceE---cCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 45567899999999997 99999988652 12334456666654444444
No 409
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.72 E-value=1.4e+02 Score=22.00 Aligned_cols=70 Identities=20% Similarity=0.318 Sum_probs=43.5
Q ss_pred hcHHHHhcCCCcEEEEEe---cCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcC-CCCCcEE-EEEeCCe
Q 017071 64 KNFSEFMGKNRNVMVMFY---ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN-ILAYPTL-YLFVAGV 138 (378)
Q Consensus 64 ~~~~~~~~~~~~~lv~F~---a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~-v~~~Pt~-~~~~~g~ 138 (378)
+.+++.+..++++|-+=- .|-|+.+.+....+.... -+.|+.||+-+++++-+... ...+||+ -+|-+|+
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g-----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACG-----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcC-----CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCE
Confidence 345566655554333222 467888777666555431 17899999999998887664 3457776 3444773
No 410
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=40.01 E-value=38 Score=25.60 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=21.6
Q ss_pred EEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCc
Q 017071 77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY 114 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~ 114 (378)
+..|..|.|+.|++....+++- ++.+-.+|.-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~------gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA------GHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEeehh
Confidence 3467899999999877665542 4555555543
No 411
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=39.96 E-value=1.2e+02 Score=20.53 Aligned_cols=55 Identities=16% Similarity=0.031 Sum_probs=33.7
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC----cHHHHHHcCCCCCcEEEEEeCCe
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFVAGV 138 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~g~ 138 (378)
..|+.+.|+.|++.+-.+.+. +-.+.+..+|... .+++.+--.-..+|++. .+|.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCE
Confidence 467888999998876444333 2245566676532 23455555566789884 4663
No 412
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=39.96 E-value=37 Score=24.09 Aligned_cols=6 Identities=50% Similarity=0.634 Sum_probs=3.7
Q ss_pred CcchhH
Q 017071 1 MEKTKT 6 (378)
Q Consensus 1 M~~~~~ 6 (378)
|+|.+.
T Consensus 1 MKK~ki 6 (85)
T PF11337_consen 1 MKKKKI 6 (85)
T ss_pred CCchHH
Confidence 877443
No 413
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=39.90 E-value=25 Score=34.10 Aligned_cols=76 Identities=16% Similarity=0.272 Sum_probs=58.3
Q ss_pred EcChhcHHHHhcCCCcEEEEEecCCChhHHhhHHH-H--HHHHHHhcCCcEEEEEeCcCcHHHHH--------HcCCCCC
Q 017071 60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAK--------EYNILAY 128 (378)
Q Consensus 60 ~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~vd~~~~~~~~~--------~~~v~~~ 128 (378)
-...+.|+++..+++|+++-.--+.|..|..+..+ | ++.++.+.++++-++||-++-+++-+ ..|--|+
T Consensus 99 pwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGW 178 (786)
T KOG2244|consen 99 PWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGW 178 (786)
T ss_pred cchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCC
Confidence 35678899999999999999999999999877653 3 33666776678888888887776554 4567788
Q ss_pred cEEEEEe
Q 017071 129 PTLYLFV 135 (378)
Q Consensus 129 Pt~~~~~ 135 (378)
|--+++.
T Consensus 179 PmsV~LT 185 (786)
T KOG2244|consen 179 PMSVFLT 185 (786)
T ss_pred ceeEEeC
Confidence 8877775
No 414
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=39.85 E-value=4e+02 Score=26.61 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=47.0
Q ss_pred ccCCCcEEcChhcHHHHhcCCCcEEEEEecCCCh--hHHhhHHHHHHHHHHhcC---CcEEEEEeCcCcHHH--------
Q 017071 53 LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCY--WSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDL-------- 119 (378)
Q Consensus 53 ~~~~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~--~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~-------- 119 (378)
.......+|++.+-+-+-.=++++-|.+|.+--. .-......+.++-++|+. ++.+-.+|-..+++.
T Consensus 27 lT~~k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~~~~ 106 (552)
T TIGR03521 27 LTEDKRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEILDS 106 (552)
T ss_pred cCCCCceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHHHHH
Confidence 3456778888887765544568888877765431 223344444444444433 788999997765433
Q ss_pred HHHcCCCCCc
Q 017071 120 AKEYNILAYP 129 (378)
Q Consensus 120 ~~~~~v~~~P 129 (378)
+.++||+..+
T Consensus 107 ~~~~gi~~~~ 116 (552)
T TIGR03521 107 LAQYGIKPAN 116 (552)
T ss_pred HHHcCCCcce
Confidence 3457887555
No 415
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=38.77 E-value=36 Score=20.89 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=8.5
Q ss_pred CcchhHHHHHHHHHH
Q 017071 1 MEKTKTLLLLLTSSI 15 (378)
Q Consensus 1 M~~~~~~~~l~~~~~ 15 (378)
|+|.++++++++.++
T Consensus 1 ~kk~rwiili~iv~~ 15 (47)
T PRK10299 1 MKKFRWVVLVVVVLA 15 (47)
T ss_pred CceeeehHHHHHHHH
Confidence 777666555444333
No 416
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=38.10 E-value=1.1e+02 Score=24.94 Aligned_cols=64 Identities=19% Similarity=0.380 Sum_probs=35.3
Q ss_pred hcCCCcEEEEEec----CCCh--hHHhhHHHHHHHHHHhcCCcEEEEEeCc---------------------CcHHHHHH
Q 017071 70 MGKNRNVMVMFYA----NWCY--WSKKLAPEFAAAAKMLKGEADLVMVDAY---------------------LEKDLAKE 122 (378)
Q Consensus 70 ~~~~~~~lv~F~a----~wC~--~C~~~~p~~~~~~~~~~~~~~~~~vd~~---------------------~~~~~~~~ 122 (378)
+..+++++++||- |.|. .| .++..++++.+. ...+..+..| ...++.+.
T Consensus 87 it~nk~vV~f~YP~asTPGCTkQaC-gFRDnY~k~kka---~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~ 162 (211)
T KOG0855|consen 87 ITGNKPVVLFFYPAASTPGCTKQAC-GFRDNYEKFKKA---GAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKD 162 (211)
T ss_pred ecCCCcEEEEEeccCCCCCcccccc-cccccHHHHhhc---CceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHH
Confidence 3456788888883 4553 23 345555555443 2334444433 33456677
Q ss_pred cCCCCCc-------EEEEEeCC
Q 017071 123 YNILAYP-------TLYLFVAG 137 (378)
Q Consensus 123 ~~v~~~P-------t~~~~~~g 137 (378)
+|+.+.| +.++|++|
T Consensus 163 lGa~k~p~gg~~~Rsh~if~kg 184 (211)
T KOG0855|consen 163 LGAPKDPFGGLPGRSHYIFDKG 184 (211)
T ss_pred hCCCCCCCCCcccceEEEEecC
Confidence 7776654 45666644
No 417
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=37.40 E-value=1.2e+02 Score=20.11 Aligned_cols=69 Identities=7% Similarity=0.002 Sum_probs=35.8
Q ss_pred EEEEEcCCCCccHHHHHHHhccCCceeEEEE-ccHHHHhhc-----CCCCCCCCCeEEEeecCCCCccccCCCCCHHHHH
Q 017071 184 VLGFLHDLEGMESEELAAASKLHSDVNFYQT-TSADVAEFF-----HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIA 257 (378)
Q Consensus 184 ~v~f~~~~~~~~~~~~~~~a~~~~~~~f~~~-~~~~~~~~~-----~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~ 257 (378)
++.|+.+||.+....-..+......+...-+ .+....+.+ +... .|+++ +..+ .. .. .-+..++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~---vP~i~-~~~g--~~-l~--~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMT---VPTVK-FADG--SF-LT--NPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCce---eCEEE-ECCC--eE-ec--CCCHHHHH
Confidence 4578899999866554444444334433322 344444443 5543 89874 4443 22 11 22445565
Q ss_pred HHHH
Q 017071 258 NFVT 261 (378)
Q Consensus 258 ~fi~ 261 (378)
+.++
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 5543
No 418
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=37.39 E-value=1.2e+02 Score=19.94 Aligned_cols=52 Identities=15% Similarity=-0.021 Sum_probs=31.2
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC----cHHHHHHcCCCCCcEEEE
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYL 133 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~ 133 (378)
..|+.++|+.|++.+-.+....- .+....++... ...+.+...-..+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI----PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 35778999999987666555322 34455555422 234444444567898853
No 419
>COG3411 Ferredoxin [Energy production and conversion]
Probab=37.23 E-value=94 Score=20.73 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCccccCCCCCCHHHHHHHHHHHhc-Cce
Q 017071 314 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE-DKL 350 (378)
Q Consensus 314 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~-Gkl 350 (378)
.|.++++ +.+.||. .++.+...+++++.+. |+.
T Consensus 17 gPvl~vY-pegvWY~---~V~p~~a~rIv~~hl~~Gr~ 50 (64)
T COG3411 17 GPVLVVY-PEGVWYT---RVDPEDARRIVQSHLLGGRP 50 (64)
T ss_pred CCEEEEe-cCCeeEe---ccCHHHHHHHHHHHHhCCCc
Confidence 4777776 5678885 7888999999999998 554
No 420
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=35.96 E-value=37 Score=22.84 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=28.6
Q ss_pred EEcCCCccccCCCCCCHHHHHHHHHHHhcCce-ee
Q 017071 319 YSARDAKKYVLNGELTLSSIKSFGEEFLEDKL-LN 352 (378)
Q Consensus 319 i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~Gkl-~~ 352 (378)
+++..++.|.+++..+.+++.+-|+.-=+|.| |.
T Consensus 38 vF~~~rkPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~ 72 (74)
T COG3592 38 VFNLGRKPWIMPDAVDVEEIVKVIDTCPSGALKYR 72 (74)
T ss_pred hcccCCCCccCCCCCCHHHHHHHHHhCCchhhhee
Confidence 34456678889999999999999999999988 54
No 421
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=35.38 E-value=50 Score=30.41 Aligned_cols=75 Identities=13% Similarity=0.112 Sum_probs=44.0
Q ss_pred ChhHHhhHHHH----HHHHHHhcC---CcEEEEEeCc-CcH--HHHHHcCCCCC-cEEEEEeCCeEeeeeeCCCCHHHHH
Q 017071 85 CYWSKKLAPEF----AAAAKMLKG---EADLVMVDAY-LEK--DLAKEYNILAY-PTLYLFVAGVRQFQFFGERTRDVIS 153 (378)
Q Consensus 85 C~~C~~~~p~~----~~~~~~~~~---~~~~~~vd~~-~~~--~~~~~~~v~~~-Pt~~~~~~g~~~~~~~g~~~~~~l~ 153 (378)
||-|..-.-.. .++.+.+.+ .+.++..-|- ..+ .-...+||.+- +...+|.+|+.+.+..+..-.+.|.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 55554444333 334444444 5788888884 222 23456777754 4577788998888877665555555
Q ss_pred HHHHHH
Q 017071 154 AWVREK 159 (378)
Q Consensus 154 ~~i~~~ 159 (378)
+-|.+.
T Consensus 351 ~~i~~~ 356 (360)
T PRK00366 351 AEIEAY 356 (360)
T ss_pred HHHHHH
Confidence 555443
No 422
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=34.63 E-value=3.1e+02 Score=23.85 Aligned_cols=34 Identities=6% Similarity=-0.188 Sum_probs=26.7
Q ss_pred CcEEEEEcC-CCccccCCCCCCHHHHHHHHHHHhc
Q 017071 314 PRVIAYSAR-DAKKYVLNGELTLSSIKSFGEEFLE 347 (378)
Q Consensus 314 ~p~i~i~~~-~~~~y~~~~~~~~~~i~~Fi~~~~~ 347 (378)
.|...++|. +...+.+.|.++.+.|++.|+.+++
T Consensus 201 ~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 201 NFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred CceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 466777888 4456667888999999999998875
No 423
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=33.01 E-value=1.9e+02 Score=20.88 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=28.6
Q ss_pred ecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcHHHHHHc--------CCCCCcEEE
Q 017071 81 YANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEY--------NILAYPTLY 132 (378)
Q Consensus 81 ~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~ 132 (378)
|-+.+.-.++....=+.+...+.. ++.|-.+|++.+++.-+.. +-..+|.++
T Consensus 5 Y~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIF 65 (92)
T cd03030 5 YIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIF 65 (92)
T ss_pred EEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEE
Confidence 333343344444443444444444 7999999998776544332 335667765
No 424
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=31.30 E-value=68 Score=29.32 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=46.1
Q ss_pred cEEEEEeCcCcHHHHHHcCCCCCcEEEEEe--CCeEeeeeeCCCCHHHHHHHHHHHhcC
Q 017071 106 ADLVMVDAYLEKDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTRDVISAWVREKMTL 162 (378)
Q Consensus 106 ~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~i~~~~~~ 162 (378)
...+..|..+...+..-|.+...|.+.+++ .|+.+.+..|...++++.+-+++.+..
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~ 191 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDS 191 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhc
Confidence 444455666778889999999999999998 888888888988899988888887743
No 425
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=30.50 E-value=18 Score=28.06 Aligned_cols=69 Identities=16% Similarity=0.316 Sum_probs=37.4
Q ss_pred CChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCC-Cc---EEEEEeCCeEeeeeeCCCCHHHHHHHHHHH
Q 017071 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA-YP---TLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 84 wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~P---t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
-|+||++..|.+.-. +.-+|.+.|.-. -| .++-+..|+......| +|-+++
T Consensus 11 ~CPhCRQ~ipALtLT-----------------DtYLC~rHGaFEAdP~t~eLVHLqSgR~Wr~W~g--------~WYRQH 65 (163)
T TIGR02652 11 RCPHCRQNIPALTLT-----------------DTYLCNRHGAFEADPETGELVHLQSGRRWRLWEG--------QWYRQH 65 (163)
T ss_pred cCchhhcccchheec-----------------ceeeccCCCccccCCCCCceEEeecCceeeeccc--------hhhhhc
Confidence 599999999866422 123555555421 22 3445556655555555 355666
Q ss_pred hcCCcccCCCHHHHHHhh
Q 017071 160 MTLGTYSITTTDEAERIL 177 (378)
Q Consensus 160 ~~~~~~~i~~~~~~~~~~ 177 (378)
..+.-..+.--+.++.+-
T Consensus 66 thpDGiRfEIheaLDrLy 83 (163)
T TIGR02652 66 THPDGIRFEIHEALDRLF 83 (163)
T ss_pred cCCCceeEeHHHHHHHHH
Confidence 655544444345555544
No 426
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=30.43 E-value=2.6e+02 Score=21.98 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=46.9
Q ss_pred CCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCCC-cEEEEEe-CCe
Q 017071 73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAY-PTLYLFV-AGV 138 (378)
Q Consensus 73 ~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~-Pt~~~~~-~g~ 138 (378)
.++-.|.+|---|+-|-.....+.+.- ..+.+.|+.+..+....+....++.-- +-.+++. +|+
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D--~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~ 71 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRD--QGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQ 71 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhc--cCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCc
Confidence 466778889999999999776665542 234799999998888888888887643 4444444 664
No 427
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=30.43 E-value=18 Score=28.06 Aligned_cols=70 Identities=16% Similarity=0.292 Sum_probs=37.6
Q ss_pred CChhHHhhHHHHHHHHHHhcCCcEEEEEeCcCcHHHHHHcCCCC-Cc---EEEEEeCCeEeeeeeCCCCHHHHHHHHHHH
Q 017071 84 WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA-YP---TLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 84 wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~P---t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
-|+||++..|.+.-. +.-+|.+.|.-. -| .++-+..|+......| +|-+++
T Consensus 8 ~CPhCRq~ipALtLT-----------------DtYLC~rHGaFEAdp~t~eLVHLqSgR~Wr~W~~--------~WyrQH 62 (161)
T PF09654_consen 8 QCPHCRQTIPALTLT-----------------DTYLCPRHGAFEADPKTGELVHLQSGRHWRLWEG--------EWYRQH 62 (161)
T ss_pred cCchhhcccchheec-----------------ceeeccCccccccCCCCCceEEeecCceeeeccc--------hhhhhc
Confidence 599999999866422 123455555321 12 3444456654444444 366666
Q ss_pred hcCCcccCCCHHHHHHhhc
Q 017071 160 MTLGTYSITTTDEAERILT 178 (378)
Q Consensus 160 ~~~~~~~i~~~~~~~~~~~ 178 (378)
..+.-..+.--+.++.+-.
T Consensus 63 thpDGiRfEIheaLDrLyt 81 (161)
T PF09654_consen 63 THPDGIRFEIHEALDRLYT 81 (161)
T ss_pred cCCCceeEeHHHHHHHHHh
Confidence 6555444444455555543
No 428
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=30.12 E-value=2.1e+02 Score=20.58 Aligned_cols=37 Identities=5% Similarity=-0.084 Sum_probs=23.1
Q ss_pred CCCcEEEEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEE
Q 017071 72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV 111 (378)
Q Consensus 72 ~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v 111 (378)
+.+||+ -.=|-|++-+....+-.+.......+....+
T Consensus 48 ~YePWF---~Pl~EPpSGEIESLLFslQaaiGa~IIgY~l 84 (97)
T COG1930 48 GYEPWF---QPLWEPPSGEIESLLFSLQAAIGAGIIGYFL 84 (97)
T ss_pred CCCccc---ccccCCCCccHHHHHHHHHHHhcceeeeeee
Confidence 457774 3446677777777777777776654444333
No 429
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=29.96 E-value=79 Score=27.38 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=32.6
Q ss_pred ccHHHHhhcCCCCCCCCCeEEEeecCCCCccccCCCCCHHHHHHHHHhcC
Q 017071 215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTK 264 (378)
Q Consensus 215 ~~~~~~~~~~i~~~~~~P~i~~~~~~~~~~~~y~g~~~~~~l~~fi~~~~ 264 (378)
.+.++++++|+++ .|+++ +.++ + ...|..+.+.|.++|....
T Consensus 190 ~~~~la~~lgi~g---TPtiv-~~~G--~--~~~G~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 190 DHYALGVQFGVQG---TPAIV-LSNG--T--LVPGYQGPKEMKAFLDEHQ 231 (232)
T ss_pred HhHHHHHHcCCcc---ccEEE-EcCC--e--EeeCCCCHHHHHHHHHHcc
Confidence 5667889999986 89998 5544 2 4478889999999998653
No 430
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=29.37 E-value=73 Score=24.98 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=40.1
Q ss_pred hcCCCCCCCcEEEEEcCCCccccCC--CCCCHHHHHHHHHHHhcCce-eee--ccCCchhhhcc
Q 017071 306 EFGVSGNAPRVIAYSARDAKKYVLN--GELTLSSIKSFGEEFLEDKL-LNQ--SDQISETILKL 364 (378)
Q Consensus 306 ~~gi~~~~~p~i~i~~~~~~~y~~~--~~~~~~~i~~Fi~~~~~Gkl-~~k--Se~~p~~~~~~ 364 (378)
..|+|++....+++.+..|....+. ..++..+|.+||..+ |+- .+- -.|.|+.++|+
T Consensus 34 IVGiDPG~ttgiAildL~G~~l~l~S~R~~~~~evi~~I~~~--G~PviVAtDV~p~P~~V~Ki 95 (138)
T PF04312_consen 34 IVGIDPGTTTGIAILDLDGELLDLKSSRNMSRSEVIEWISEY--GKPVIVATDVSPPPETVKKI 95 (138)
T ss_pred EEEECCCceeEEEEEecCCcEEEEEeecCCCHHHHHHHHHHc--CCEEEEEecCCCCcHHHHHH
Confidence 4688998889999999866544433 389999999999765 765 332 23667775554
No 431
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=28.23 E-value=40 Score=30.73 Aligned_cols=71 Identities=10% Similarity=-0.012 Sum_probs=39.6
Q ss_pred CCcEEEEEecCCChhHHhh-HHHHHHHHHHhc---CCcEEEEEeCcCcH---HHHHHcCCCCC--cEEEEEeCCeEeeee
Q 017071 73 NRNVMVMFYANWCYWSKKL-APEFAAAAKMLK---GEADLVMVDAYLEK---DLAKEYNILAY--PTLYLFVAGVRQFQF 143 (378)
Q Consensus 73 ~~~~lv~F~a~wC~~C~~~-~p~~~~~~~~~~---~~~~~~~vd~~~~~---~~~~~~~v~~~--Pt~~~~~~g~~~~~~ 143 (378)
..+-+| -=|.|+.|.-- .....++.+.+. ..+.++.+-|--|. .--..+||.+- -...+|++|+.+.+.
T Consensus 255 ~g~~ii--SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv 332 (346)
T TIGR00612 255 RGVEIV--ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQ 332 (346)
T ss_pred CCCeEE--ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEec
Confidence 344444 34566655422 222333333333 36888888886542 22235677653 457889999876665
Q ss_pred eC
Q 017071 144 FG 145 (378)
Q Consensus 144 ~g 145 (378)
.+
T Consensus 333 ~~ 334 (346)
T TIGR00612 333 PE 334 (346)
T ss_pred CH
Confidence 54
No 432
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=27.96 E-value=2.1e+02 Score=23.24 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=44.8
Q ss_pred HHHHHHhcCCcccCC-CHHHHHHhhccCCeEEEEEEcCCCCc----cHHHHH--HHhc----cCCceeEEEEccHHHHhh
Q 017071 154 AWVREKMTLGTYSIT-TTDEAERILTVESKLVLGFLHDLEGM----ESEELA--AASK----LHSDVNFYQTTSADVAEF 222 (378)
Q Consensus 154 ~~i~~~~~~~~~~i~-~~~~~~~~~~~~~~~~v~f~~~~~~~----~~~~~~--~~a~----~~~~~~f~~~~~~~~~~~ 222 (378)
-++.++...+|.=.. +.+.++...+.+++++|.+..++|.- ..+.|. ++|. ..-.+++..-..+++...
T Consensus 10 pyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~ 89 (163)
T PF03190_consen 10 PYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKI 89 (163)
T ss_dssp HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHH
T ss_pred HHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHH
Confidence 356666666664332 45778888888999999999999974 223342 2332 222233333355677776
Q ss_pred c--------CCCCCCCCCeEEEeecCC
Q 017071 223 F--------HIHPKSKRPALIFLHLEA 241 (378)
Q Consensus 223 ~--------~i~~~~~~P~i~~~~~~~ 241 (378)
| |.. ++|+-++..++.
T Consensus 90 y~~~~~~~~~~g---GwPl~vfltPdg 113 (163)
T PF03190_consen 90 YMNAVQAMSGSG---GWPLTVFLTPDG 113 (163)
T ss_dssp HHHHHHHHHS------SSEEEEE-TTS
T ss_pred HHHHHHHhcCCC---CCCceEEECCCC
Confidence 6 444 499999888753
No 433
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=27.37 E-value=2.7e+02 Score=20.92 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.3
Q ss_pred EEEEccHHHHhhcCCCCCCCCCeEEEeec
Q 017071 211 FYQTTSADVAEFFHIHPKSKRPALIFLHL 239 (378)
Q Consensus 211 f~~~~~~~~~~~~~i~~~~~~P~i~~~~~ 239 (378)
-...-++.+.++|+|+. .|++++-+.
T Consensus 55 ~~v~IdP~~F~~y~I~~---VPa~V~~~~ 80 (113)
T PF09673_consen 55 PGVQIDPRLFRQYNITA---VPAFVVVKD 80 (113)
T ss_pred cceeEChhHHhhCCceE---cCEEEEEcC
Confidence 34567899999999997 999998877
No 434
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=27.29 E-value=78 Score=24.10 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=17.0
Q ss_pred EEEEecCCChhHHhhHHHHHH
Q 017071 77 MVMFYANWCYWSKKLAPEFAA 97 (378)
Q Consensus 77 lv~F~a~wC~~C~~~~p~~~~ 97 (378)
+-.|+.|.|..|++....+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456889999999998877765
No 435
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=27.13 E-value=87 Score=23.59 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=23.0
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~ 115 (378)
..|+.+.|..|++....+++. ++.+-.+|..+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccC
Confidence 467899999999988877663 45555666544
No 436
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=26.99 E-value=49 Score=27.24 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=35.8
Q ss_pred eCCCCHHHHHHHHHHHhcCCcccCCCHHHHHHhhccCCeEEEEEEcCCCCccHHHHHHHhccCCceeEEEEccHHHHhhc
Q 017071 144 FGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFF 223 (378)
Q Consensus 144 ~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~~~~~~ 223 (378)
.|......+..-|++.+-..-..+++.+-+.+..++-+ -..+.|.+-... +...=....+-.+++..
T Consensus 77 qg~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~g------------LD~~~F~~d~~S-~~~~~~~~~D~~la~~m 143 (176)
T PF13743_consen 77 QGKKKARRFLRALQEALFLEGKNYSDEELLLEIAEELG------------LDVEMFKEDLHS-DEAKQAFQEDQQLAREM 143 (176)
T ss_dssp TT-H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--------------HHHHHHHHTS-HHHHHHHHHHHHHHHHT
T ss_pred hChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhC------------CCHHHHHHHHhC-hHHHHHHHHHHHHHHHc
Confidence 35555556666666666555555555555555544422 112222211100 00000011345788999
Q ss_pred CCCCCCCCCeEEEeecC-CCCccccCCCCCHHH
Q 017071 224 HIHPKSKRPALIFLHLE-AGKATPFRHQFTRLA 255 (378)
Q Consensus 224 ~i~~~~~~P~i~~~~~~-~~~~~~y~g~~~~~~ 255 (378)
+|+. +||++++... ++..+..+|..+.+.
T Consensus 144 ~I~~---~Ptlvi~~~~~~~~g~~i~g~~~~~~ 173 (176)
T PF13743_consen 144 GITG---FPTLVIFNENNEEYGILIEGYYSYEV 173 (176)
T ss_dssp T-SS---SSEEEEE-------------------
T ss_pred CCCC---CCEEEEEecccccccccccccccccc
Confidence 9997 9999999832 345556666655443
No 437
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=26.31 E-value=1.6e+02 Score=23.80 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=21.9
Q ss_pred eeEEEEccHHHHhhcCCCCCCCCCeEEEeecCC
Q 017071 209 VNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA 241 (378)
Q Consensus 209 ~~f~~~~~~~~~~~~~i~~~~~~P~i~~~~~~~ 241 (378)
+.|+.....++.++|++.. .|++++.++.+
T Consensus 97 iPf~d~~~~~l~~ky~v~~---iP~l~i~~~dG 126 (157)
T KOG2501|consen 97 IPFGDDLIQKLSEKYEVKG---IPALVILKPDG 126 (157)
T ss_pred ecCCCHHHHHHHHhcccCc---CceeEEecCCC
Confidence 3444445567888899986 89999888754
No 438
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=26.28 E-value=2.9e+02 Score=20.97 Aligned_cols=50 Identities=4% Similarity=0.081 Sum_probs=27.9
Q ss_pred ceeEEEEccHHHHhhcCCCCC------CCCCeEEEeecCCCCccccCCCCCHHHHH
Q 017071 208 DVNFYQTTSADVAEFFHIHPK------SKRPALIFLHLEAGKATPFRHQFTRLAIA 257 (378)
Q Consensus 208 ~~~f~~~~~~~~~~~~~i~~~------~~~P~i~~~~~~~~~~~~y~g~~~~~~l~ 257 (378)
.+.+....+..+.+.|++... ...|+.+++.+...-...+.|....+++.
T Consensus 81 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~ 136 (140)
T cd03017 81 PFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAE 136 (140)
T ss_pred CceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHH
Confidence 344444555677778887641 00177777776554555566655444443
No 439
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=26.02 E-value=3.1e+02 Score=21.22 Aligned_cols=73 Identities=15% Similarity=0.271 Sum_probs=43.6
Q ss_pred ccCCCHHHHHHhhcc--CCeEEEEEEcCCCC---ccHHHHHHHh-ccCCceeEEEE---ccHHHHhhcCCCCCCCCCeEE
Q 017071 165 YSITTTDEAERILTV--ESKLVLGFLHDLEG---MESEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI 235 (378)
Q Consensus 165 ~~i~~~~~~~~~~~~--~~~~~v~f~~~~~~---~~~~~~~~~a-~~~~~~~f~~~---~~~~~~~~~~i~~~~~~P~i~ 235 (378)
..++|..+.++.+.+ .+.++|-|-.+|+. ..-+.+...+ ....-..++.+ .-++..+-|++.. .|+++
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~---p~tvm 82 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYD---PPTVM 82 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccC---CceEE
Confidence 345677777777655 45566666555543 2444555555 33333344433 4456677889886 78888
Q ss_pred EeecC
Q 017071 236 FLHLE 240 (378)
Q Consensus 236 ~~~~~ 240 (378)
+|-.+
T Consensus 83 fFfn~ 87 (142)
T KOG3414|consen 83 FFFNN 87 (142)
T ss_pred EEEcC
Confidence 87654
No 440
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=25.90 E-value=2.6e+02 Score=20.17 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=40.5
Q ss_pred cCCChhHHhhHHHHHHHHHHhcC-CcEEEEEeCcCcHH-HHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHHHHH
Q 017071 82 ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKD-LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159 (378)
Q Consensus 82 a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~-~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 159 (378)
..+|+.|++.+=.+.+. + .+.+..||....++ +.+..-...+|++. ++|..+ .+...|.++|.+.
T Consensus 19 ~g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i------~eS~~I~eYLde~ 85 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK------TDNNKIEEFLEET 85 (91)
T ss_pred CCCChhHHHHHHHHHHC-----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe------cCHHHHHHHHHHH
Confidence 36799998877655543 2 44556666555444 44444456689653 455322 4667888888876
Q ss_pred hc
Q 017071 160 MT 161 (378)
Q Consensus 160 ~~ 161 (378)
..
T Consensus 86 ~~ 87 (91)
T cd03061 86 LC 87 (91)
T ss_pred cc
Confidence 53
No 441
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=25.73 E-value=2.7e+02 Score=22.45 Aligned_cols=55 Identities=2% Similarity=-0.088 Sum_probs=33.6
Q ss_pred eeEEEEccHHHHhhcCCCCC---CCCCeEEEeecCCCCccccCC----CCCHHHHHHHHHhc
Q 017071 209 VNFYQTTSADVAEFFHIHPK---SKRPALIFLHLEAGKATPFRH----QFTRLAIANFVTHT 263 (378)
Q Consensus 209 ~~f~~~~~~~~~~~~~i~~~---~~~P~i~~~~~~~~~~~~y~g----~~~~~~l~~fi~~~ 263 (378)
+.+....+..+++.|++... ...|+.+++.++..-...+-+ ..+.+++.+.|+..
T Consensus 95 f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 95 FPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred eeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 44445566788899998521 135788888876533333322 23567788888654
No 442
>PRK13190 putative peroxiredoxin; Provisional
Probab=25.54 E-value=2.5e+02 Score=23.56 Aligned_cols=55 Identities=4% Similarity=-0.029 Sum_probs=34.9
Q ss_pred eeEEEEccHHHHhhcCCCC---CCCCCeEEEeecCCCCcc--cc--CCCCCHHHHHHHHHhc
Q 017071 209 VNFYQTTSADVAEFFHIHP---KSKRPALIFLHLEAGKAT--PF--RHQFTRLAIANFVTHT 263 (378)
Q Consensus 209 ~~f~~~~~~~~~~~~~i~~---~~~~P~i~~~~~~~~~~~--~y--~g~~~~~~l~~fi~~~ 263 (378)
+......+.++++.||+.. ....|+.+++.++..-.. .| .+.++.+++.+.|+..
T Consensus 92 fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 92 FPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred EEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 4445556778999999841 113688888876542221 12 3346888888888764
No 443
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=25.07 E-value=1.1e+02 Score=25.88 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHHcCCCCCcEEEEEeCCeEeeeeeCCCCHHHHHHHH
Q 017071 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156 (378)
Q Consensus 118 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i 156 (378)
+-+.+.||.|+|++++=+++.....|-|.--.+.+.+++
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 345677999999998854321334777776666666554
No 444
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=24.11 E-value=97 Score=19.33 Aligned_cols=8 Identities=25% Similarity=0.119 Sum_probs=3.8
Q ss_pred CcchhHHH
Q 017071 1 MEKTKTLL 8 (378)
Q Consensus 1 M~~~~~~~ 8 (378)
|+|+.+.+
T Consensus 1 MmKk~i~~ 8 (48)
T PRK10081 1 MVKKTIAA 8 (48)
T ss_pred ChHHHHHH
Confidence 55554433
No 445
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=24.05 E-value=81 Score=23.65 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=22.5
Q ss_pred EEEecCCChhHHhhHHHHHHHHHHhcCCcEEEEEeCcC
Q 017071 78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115 (378)
Q Consensus 78 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~ 115 (378)
..|+.+.|..|++....+++. ++.+-.+|.-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccc
Confidence 467889999999987666643 45555666544
No 446
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.75 E-value=1.5e+02 Score=24.63 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=33.7
Q ss_pred HHhcCCCcEEEEEecCCChhHHhhHHHHHHHHHHhcC-CcEEEEEe
Q 017071 68 EFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVD 112 (378)
Q Consensus 68 ~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd 112 (378)
++..++..++.-.--+.|--|++....+.++...++. ++..+.|-
T Consensus 46 ~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 46 SLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred HhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 4445666677777789999999999999998655554 66666665
No 447
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=23.39 E-value=49 Score=25.88 Aligned_cols=14 Identities=21% Similarity=0.384 Sum_probs=10.8
Q ss_pred CCChhHHhhHHHHH
Q 017071 83 NWCYWSKKLAPEFA 96 (378)
Q Consensus 83 ~wC~~C~~~~p~~~ 96 (378)
+=|++||+.+-+|.
T Consensus 86 sPCG~CRQ~i~Ef~ 99 (134)
T COG0295 86 SPCGACRQVLAEFC 99 (134)
T ss_pred CCcHHHHHHHHHhc
Confidence 44999999877664
No 448
>PHA02291 hypothetical protein
Probab=22.78 E-value=90 Score=23.01 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=12.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHh
Q 017071 1 MEKTKTLLLLLTSSIILFKLYL 22 (378)
Q Consensus 1 M~~~~~~~~l~~~~~ll~~l~~ 22 (378)
|..+.+++.+++.++|+.+++.
T Consensus 1 MS~K~~iFYiL~~~VL~~si~s 22 (132)
T PHA02291 1 MSRKASIFYILVVIVLAFSISS 22 (132)
T ss_pred CCcchhhHHHHHHHHHHHHHHH
Confidence 6656566655555555555543
No 449
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=22.74 E-value=1.4e+02 Score=24.08 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=32.0
Q ss_pred HhhcCCCCCCCcEEEEEcC-CCccccCCCCCCHHHHHHHHHHHhc
Q 017071 304 SQEFGVSGNAPRVIAYSAR-DAKKYVLNGELTLSSIKSFGEEFLE 347 (378)
Q Consensus 304 ~~~~gi~~~~~p~i~i~~~-~~~~y~~~~~~~~~~i~~Fi~~~~~ 347 (378)
.+..++.+.. -+|++.|. +...|.-+|.++.+++.+++.=+.+
T Consensus 116 ~~aW~L~~~~-SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 116 RKAWQLQEES-SAIIVLDKQGKVQFVKEGALSPAEVQQVIALLKK 159 (160)
T ss_pred eccccCCCCC-ceEEEEcCCccEEEEECCCCCHHHHHHHHHHHhc
Confidence 4556775433 46778888 5567888999999999999987654
No 450
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.74 E-value=90 Score=18.14 Aligned_cols=22 Identities=5% Similarity=0.208 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHhcCCCceEEe
Q 017071 250 QFTRLAIANFVTHTKHPLVVTL 271 (378)
Q Consensus 250 ~~~~~~l~~fi~~~~~P~~~~l 271 (378)
.++.++|.+|+..+.+|.-...
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCC
Confidence 4678999999999988765544
No 451
>PRK13617 psbV cytochrome c-550; Provisional
Probab=22.49 E-value=51 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=20.2
Q ss_pred CCcccCCCcEEcChhcHHHHhcCCCcEEEEEecCCChhHH
Q 017071 50 WPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSK 89 (378)
Q Consensus 50 ~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~F~a~wC~~C~ 89 (378)
.|.......+.++.+++.. ++-+ | ...|..|.
T Consensus 43 v~~~~~g~~~~~s~~~~~~----G~~~---F-~~~C~~CH 74 (170)
T PRK13617 43 VPADPSGSQVTFSESEIKA----GRKV---F-NTSCGTCH 74 (170)
T ss_pred eecCCCCCeEEeCHHHHHH----HHHH---H-Hcchhhhc
Confidence 3444556677788776643 3333 3 78899996
No 452
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.85 E-value=2.5e+02 Score=23.35 Aligned_cols=7 Identities=29% Similarity=0.690 Sum_probs=3.7
Q ss_pred CcEEEEE
Q 017071 74 RNVMVMF 80 (378)
Q Consensus 74 ~~~lv~F 80 (378)
.|+|..|
T Consensus 80 ~P~l~lf 86 (188)
T COG3117 80 APVLTLF 86 (188)
T ss_pred cceEEEE
Confidence 4555555
No 453
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=20.55 E-value=1.3e+02 Score=25.08 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCccccCCCCCCHHHHHHHHHHHhcCce--------eeeccCC
Q 017071 314 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL--------LNQSDQI 357 (378)
Q Consensus 314 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~Gkl--------~~kSe~~ 357 (378)
.|.+.|.|. +| ++.|++.+.+-++++.+||. ..+|||-
T Consensus 167 aPmi~IND~---yy---edlt~k~l~eIle~L~~~k~pp~GprngR~a~eP~ 212 (233)
T KOG3196|consen 167 APMIAINDD---YY---EDLTPKKLVEILEDLKAGKKPPAGPRNGRFASEPK 212 (233)
T ss_pred Cceeeecch---hh---ccCCHHHHHHHHHHHhcCCCCCCCCCCCccccCCC
Confidence 388888652 33 68999999999999999998 4667654
No 454
>PRK09810 entericidin A; Provisional
Probab=20.46 E-value=1.2e+02 Score=18.31 Aligned_cols=7 Identities=29% Similarity=0.211 Sum_probs=3.5
Q ss_pred CcchhHH
Q 017071 1 MEKTKTL 7 (378)
Q Consensus 1 M~~~~~~ 7 (378)
|+|+.+.
T Consensus 1 mMkk~~~ 7 (41)
T PRK09810 1 MMKRLIV 7 (41)
T ss_pred ChHHHHH
Confidence 5555443
Done!