BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017072
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PQV|A Chain A, Cyclase Homolog
pdb|3PQV|B Chain B, Cyclase Homolog
pdb|3PQV|C Chain C, Cyclase Homolog
pdb|3PQV|D Chain D, Cyclase Homolog
Length = 365
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 214/385 (55%), Gaps = 28/385 (7%)
Query: 1 MGKKTSYKRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICD 60
M + Y +GS++ R R+V++TL+ + I+ IR+DD PGL+ +E+S LRL+E + +
Sbjct: 2 MSSSSRYVTFEGSRNFRLRVVMATLSGKAIKIEKIRSDDLNPGLKDYEVSFLRLMEAVTN 61
Query: 61 DCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRG 120
+EI+ TGT + ++PGI+ GG + H C S+ +GYF EP++ + F+KK SI RG
Sbjct: 62 GSSIEISYTGTTVIFRPGIITGG-SYTHQCPNSKPVGYFAEPMLYLAPFSKKKFSILFRG 120
Query: 121 ITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMA 180
IT+ D +D + +P++++FGV L RGSPP GGGEV L +VD L+A
Sbjct: 121 ITSSHNDAGIDAIKWGLMPIMEKFGVRE--CALHTLKRGSPPLGGGEVHL---VVDSLIA 175
Query: 181 ----VRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQA 236
+ LD+ M+ IRGVS+STRVS N MI A+ + +V+I D G +
Sbjct: 176 QPITMHALDKTMISSIRGVSYSTRVSPSLVNRMIDGAKKVLKSASCEVNITADVWRGENS 235
Query: 237 GKSPGYGISLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLE 296
GKSPG+G++LVAE G I S A G+ ++ P+++G +A LLE
Sbjct: 236 GKSPGWGLTLVAENKQGWRI-----FSEAIGDAGDV----------PEDIGASVAYHLLE 280
Query: 297 EIAKGGVVDSTHQGLLFLLCALSEPDVSKVRVGK--LSPYGIEMLRNIFDFLDIRFDIMP 354
EI+K GVV L L + + D+ ++R+ K + + +LR+I + P
Sbjct: 281 EISKSGVVGRNQLPLTILYMIIGKEDIGRLRITKDQIDERFVWLLRDIKKVFGTEILLKP 340
Query: 355 -DPSTGTVILRCVGCGYKNLSRKLS 378
D +T +I G G+ N ++K++
Sbjct: 341 VDDNTTDLIATIKGIGFTNTNKKIA 365
>pdb|3KGD|A Chain A, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|B Chain B, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|C Chain C, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|D Chain D, Crystal Structure Of E. Coli Rna 3' Cyclase
Length = 358
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 124/300 (41%), Gaps = 17/300 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I IRA PGL ++ ++ IC VE E G+
Sbjct: 35 GGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICG-ATVEGAELGS 93
Query: 72 E-LEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
+ L ++PG V GG + G + S L+ ++ FA P + + G T++P P
Sbjct: 94 QRLLFRPGTVRGG-DYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPA 152
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R PLL + G+ + L+ G P GGG V + V ++ + G +
Sbjct: 153 DFIRRVLEPLLAKIGIHQQTTLLR---HGFYPAGGGVVATEVSPVASFNTLQLGERGNIV 209
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
++RG V I G F+ ++H + PG +SL E+
Sbjct: 210 QMRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRD-------QGPGNTVSLEVES 262
Query: 251 ---TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDST 307
T F+ + VS A ++ + KR L VGE +A L+ +A G + T
Sbjct: 263 ENITERFFVVGEKRVS-AEVVAAQLVKEVKRYLASTAAVGEYLADQLVLPMALAGAGEFT 321
>pdb|1QMH|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMH|B Chain B, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
Length = 347
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 124/300 (41%), Gaps = 17/300 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I IRA PGL ++ ++ IC VE E G+
Sbjct: 16 GGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICG-ATVEGAELGS 74
Query: 72 E-LEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
+ L ++PG V GG + G + S L+ ++ FA P + + G T++P P
Sbjct: 75 QRLLFRPGTVRGG-DYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPA 133
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R PLL + G+ + L+ G P GGG V + V ++ + G +
Sbjct: 134 DFIRRVLEPLLAKIGIHQQTTLLR---HGFYPAGGGVVATEVSPVASFNTLQLGERGNIV 190
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
++RG V I G F+ ++H + PG +SL E+
Sbjct: 191 QMRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRD-------QGPGNTVSLEVES 243
Query: 251 ---TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDST 307
T F+ + VS A ++ + KR L VGE +A L+ +A G + T
Sbjct: 244 ENITERFFVVGEKRVS-AEVVAAQLVKEVKRYLASTAAVGEYLADQLVLPMALAGAGEFT 302
>pdb|3TUT|A Chain A, Crystal Structure Of Rtca.Atp Binary Complex
pdb|3TUX|A Chain A, Crystal Structure Of Rtca.Atp.Mn Ternary Complex
pdb|3TV1|A Chain A, Crystal Structure Of Rtca.Amp Product Complex
pdb|3TV1|B Chain B, Crystal Structure Of Rtca.Amp Product Complex
pdb|3TW3|A Chain A, Crystal Structure Of Rtca.Atp.Co Ternary Complex
Length = 358
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 124/300 (41%), Gaps = 17/300 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I IRA PGL ++ ++ IC VE E G+
Sbjct: 35 GGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICG-ATVEGAELGS 93
Query: 72 E-LEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
+ L ++PG V GG + G + S L+ ++ FA P + + G T++P P
Sbjct: 94 QRLLFRPGTVRGG-DYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPA 152
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R PLL + G+ + L+ G P GGG V + V ++ + G +
Sbjct: 153 DFIRRVLEPLLAKIGIHQQTTLLR---HGFYPAGGGVVATEVSPVASFNTLQLGERGNIV 209
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
++RG V I G F+ ++H + PG +SL E+
Sbjct: 210 QMRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRD-------QGPGNTVSLEVES 262
Query: 251 ---TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDST 307
T F+ + VS A ++ + KR L VGE +A L+ +A G + T
Sbjct: 263 ENITERFFVVGEKRVS-AEVVAAQLVKEVKRYLASTAAVGEYLADQLVLPMALAGAGEFT 321
>pdb|1QMI|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|B Chain B, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|C Chain C, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|D Chain D, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
Length = 347
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 122/300 (40%), Gaps = 17/300 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I IRA PGL ++ ++ IC VE E G+
Sbjct: 16 GGQILRSALSLSXITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICG-ATVEGAELGS 74
Query: 72 E-LEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
+ L ++PG V GG + G + S L+ ++ FA P + + G T++P P
Sbjct: 75 QRLLFRPGTVRGG-DYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPA 133
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R PLL + G+ + L+ G P GGG V + V ++ + G +
Sbjct: 134 DFIRRVLEPLLAKIGIHQQTTLLR---HGFYPAGGGVVATEVSPVASFNTLQLGERGNIV 190
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
+ RG V I G F+ ++H + PG +SL E+
Sbjct: 191 QXRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRD-------QGPGNTVSLEVES 243
Query: 251 ---TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDST 307
T F+ + VS A ++ + KR L VGE +A L+ A G + T
Sbjct: 244 ENITERFFVVGEKRVS-AEVVAAQLVKEVKRYLASTAAVGEYLADQLVLPXALAGAGEFT 302
>pdb|2VYE|A Chain A, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYE|B Chain B, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYF|A Chain A, Crystal Structure Of The Dnac
pdb|2VYF|B Chain B, Crystal Structure Of The Dnac
Length = 454
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 285 NVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVSKVRVGKLSP 333
N+ + +A+ E +A + S Q ++ +LCA + +R GKL+P
Sbjct: 222 NIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTP 270
>pdb|2R6A|A Chain A, Crystal Form Bh1
pdb|2R6A|B Chain B, Crystal Form Bh1
pdb|2R6E|A Chain A, Crystal Form B2
pdb|2R6E|B Chain B, Crystal Form B2
pdb|2R6C|A Chain A, Crystal Form Bh2
pdb|2R6C|B Chain B, Crystal Form Bh2
pdb|2R6C|C Chain C, Crystal Form Bh2
pdb|2R6C|D Chain D, Crystal Form Bh2
pdb|2R6C|E Chain E, Crystal Form Bh2
pdb|2R6C|F Chain F, Crystal Form Bh2
pdb|2R6D|A Chain A, Crystal Form B1
pdb|2R6D|B Chain B, Crystal Form B1
pdb|2R6D|C Chain C, Crystal Form B1
pdb|2R6D|D Chain D, Crystal Form B1
pdb|2R6D|E Chain E, Crystal Form B1
pdb|2R6D|F Chain F, Crystal Form B1
pdb|4ESV|A Chain A, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|B Chain B, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|C Chain C, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|D Chain D, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|E Chain E, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|F Chain F, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|G Chain G, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|H Chain H, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|I Chain I, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|J Chain J, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|K Chain K, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|L Chain L, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
Length = 454
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 285 NVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVSKVRVGKLSP 333
N+ + +A+ E +A + S Q ++ +LCA + +R GKL+P
Sbjct: 222 NIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTP 270
>pdb|4I8M|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant V219i
Length = 536
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 51/263 (19%)
Query: 51 LLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVG--- 107
+LRL D+C+ I+ ++ + + GG H +RS+ + LEPL +
Sbjct: 219 ILRLFHGHMDECLT-ISAADSDDQRRLVYYEGGAVCTH----ARSL-WRLEPLRISWSGS 272
Query: 108 -LFAKKPISIR------LRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELK----IE 156
L +P+ IR +T D VD ++ T F V E L+ +E
Sbjct: 273 HLRWGQPLRIRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTAPKRDVE 332
Query: 157 SRGSPPDGGGEVILTIPIVDRLMAVRWLDE----------GMVKR---------IRGVSF 197
G P GE ++ V + + WL G++K+ + F
Sbjct: 333 GMGPPEIKYGE---SLCFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALF 389
Query: 198 STRVSSQFENS--MIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETTSGCF 255
TR + + MIH+ G++N+ + + F+ G G P G +L E
Sbjct: 390 LTRCQQEESQAARMIHSTAGLYNQFIKGLDSFS----GKPRGSGPPAGPALPIEAV---I 442
Query: 256 ISVDTAVSYARGEVDEIEYDEKR 278
+S+ + Y +E++++EK+
Sbjct: 443 LSLQDLIGYFEPPSEELQHEEKQ 465
>pdb|1DGS|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
pdb|1DGS|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase From T.
Filiformis
Length = 667
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 268 EVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVSKV 326
+V ++ + K +L+ + +GE+ A LL +I +S H+GL LL AL P V +V
Sbjct: 465 DVADLYHLRKEDLLGLERMGEKSAQNLLRQIE-----ESKHRGLERLLYALGLPGVGEV 518
>pdb|4I6I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-559) Disease Mutant R45c
Length = 559
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 51/263 (19%)
Query: 51 LLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVG--- 107
+LRL D+C+ I+ ++ + + GG H +RS+ + LEPL +
Sbjct: 219 VLRLFHGHMDECLT-ISAADSDDQRRLVYYEGGAVCTH----ARSL-WRLEPLRISWSGS 272
Query: 108 -LFAKKPISIR------LRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELK----IE 156
L +P+ IR +T D VD ++ T F V E L+ +E
Sbjct: 273 HLRWGQPLRIRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTAPKRDVE 332
Query: 157 SRGSPPDGGGEVILTIPIVDRLMAVRWLDE----------GMVKR---------IRGVSF 197
G P GE ++ V + + WL G++K+ + F
Sbjct: 333 GMGPPEIKYGE---SLCFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALF 389
Query: 198 STRVSSQFENS--MIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETTSGCF 255
TR + + MIH+ G++N+ + + F+ G G P G +L E
Sbjct: 390 LTRCQQEESQAARMIHSTAGLYNQFIKGLDSFS----GKPRGSGPPAGPALPIEAV---I 442
Query: 256 ISVDTAVSYARGEVDEIEYDEKR 278
+S+ + Y +E++++EK+
Sbjct: 443 LSLQDLIGYFEPPSEELQHEEKQ 465
>pdb|1V9P|A Chain A, Crystal Structure Of Nad+-Dependent Dna Ligase
pdb|1V9P|B Chain B, Crystal Structure Of Nad+-Dependent Dna Ligase
Length = 584
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 268 EVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVSKVR 327
+V ++ + K +L+ + +GE+ A LL +I +S H+GL LL AL P V +V
Sbjct: 468 DVADLYHLRKEDLLGLERMGEKSAQNLLRQIE-----ESKHRGLERLLYALGLPGVGEVL 522
Query: 328 VGKLS 332
L+
Sbjct: 523 ARNLA 527
>pdb|4I37|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant R402g
Length = 536
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 51/263 (19%)
Query: 51 LLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVG--- 107
+LRL D+C+ I+ ++ + + GG H +RS+ + LEPL +
Sbjct: 219 VLRLFHGHMDECLT-ISAADSDDQRRLVYYEGGAVCTH----ARSL-WRLEPLRISWSGS 272
Query: 108 -LFAKKPISIR------LRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELK----IE 156
L +P+ IR +T D VD ++ T F V E L+ +E
Sbjct: 273 HLRWGQPLRIRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTAPKRDVE 332
Query: 157 SRGSPPDGGGEVILTIPIVDRLMAVRWLDE----------GMVKR---------IRGVSF 197
G P GE ++ V + + WL G++K+ + F
Sbjct: 333 GMGPPEIKYGE---SLCFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALF 389
Query: 198 STRVSSQFENS--MIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETTSGCF 255
TR + + MIH+ G++N+ + + F+ G G P G +L E
Sbjct: 390 LTRCQQEESQAAGMIHSTAGLYNQFIKGLDSFS----GKPRGSGPPAGPALPIEAV---I 442
Query: 256 ISVDTAVSYARGEVDEIEYDEKR 278
+S+ + Y +E++++EK+
Sbjct: 443 LSLQDLIGYFEPPSEELQHEEKQ 465
>pdb|4I3N|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant D61n
Length = 536
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 51/263 (19%)
Query: 51 LLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVG--- 107
+LRL D+C+ I+ ++ + + GG H +RS+ + LEPL +
Sbjct: 219 VLRLFHGHMDECLT-ISAADSDDQRRLVYYEGGAVCTH----ARSL-WRLEPLRISWSGS 272
Query: 108 -LFAKKPISIR------LRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELK----IE 156
L +P+ IR +T D VD ++ T F V E L+ +E
Sbjct: 273 HLRWGQPLRIRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTAPKRDVE 332
Query: 157 SRGSPPDGGGEVILTIPIVDRLMAVRWLDE----------GMVKR---------IRGVSF 197
G P GE ++ V + + WL G++K+ + F
Sbjct: 333 GMGPPEIKYGE---SLCFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALF 389
Query: 198 STRVSSQFENS--MIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETTSGCF 255
TR + + MIH+ G++N+ + + F+ G G P G +L E
Sbjct: 390 LTRCQQEESQAARMIHSTAGLYNQFIKGLDSFS----GKPRGSGPPAGPALPIEAV---I 442
Query: 256 ISVDTAVSYARGEVDEIEYDEKR 278
+S+ + Y +E++++EK+
Sbjct: 443 LSLQDLIGYFEPPSEELQHEEKQ 465
>pdb|2XOA|A Chain A, Crystal Structure Of The N-Terminal Three Domains Of The
Skeletal Muscle Ryanodine Receptor (Ryr1)
Length = 559
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 51/263 (19%)
Query: 51 LLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVG--- 107
+LRL D+C+ I+ ++ + + GG H +RS+ + LEPL +
Sbjct: 219 VLRLFHGHMDECLT-ISAADSDDQRRLVYYEGGAVCTH----ARSL-WRLEPLRISWSGS 272
Query: 108 -LFAKKPISIR------LRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELK----IE 156
L +P+ IR +T D VD ++ T F V E L+ +E
Sbjct: 273 HLRWGQPLRIRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTAPKRDVE 332
Query: 157 SRGSPPDGGGEVILTIPIVDRLMAVRWLDE----------GMVKR---------IRGVSF 197
G P GE ++ V + + WL G++K+ + F
Sbjct: 333 GMGPPEIKYGE---SLCFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALF 389
Query: 198 STRVSSQFENS--MIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETTSGCF 255
TR + + MIH+ G++N+ + + F+ G G P G +L E
Sbjct: 390 LTRCQQEESQAARMIHSTAGLYNQFIKGLDSFS----GKPRGSGPPAGPALPIEAV---I 442
Query: 256 ISVDTAVSYARGEVDEIEYDEKR 278
+S+ + Y +E++++EK+
Sbjct: 443 LSLQDLIGYFEPPSEELQHEEKQ 465
>pdb|4I0Y|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant C36r
Length = 536
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 51/263 (19%)
Query: 51 LLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVG--- 107
+LRL D+C+ I+ ++ + + GG H +RS+ + LEPL +
Sbjct: 219 VLRLFHGHMDECLT-ISAADSDDQRRLVYYEGGAVCTH----ARSL-WRLEPLRISWSGS 272
Query: 108 -LFAKKPISIR------LRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELK----IE 156
L +P+ IR +T D VD ++ T F V E L+ +E
Sbjct: 273 HLRWGQPLRIRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTAPKRDVE 332
Query: 157 SRGSPPDGGGEVILTIPIVDRLMAVRWLDE----------GMVKR---------IRGVSF 197
G P GE ++ V + + WL G++K+ + F
Sbjct: 333 GMGPPEIKYGE---SLCFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALF 389
Query: 198 STRVSSQFENS--MIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETTSGCF 255
TR + + MIH+ G++N+ + + F+ G G P G +L E
Sbjct: 390 LTRCQQEESQAARMIHSTAGLYNQFIKGLDSFS----GKPRGSGPPAGPALPIEAV---I 442
Query: 256 ISVDTAVSYARGEVDEIEYDEKR 278
+S+ + Y +E++++EK+
Sbjct: 443 LSLQDLIGYFEPPSEELQHEEKQ 465
>pdb|4I7I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant L14r
Length = 536
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 104/263 (39%), Gaps = 51/263 (19%)
Query: 51 LLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVG--- 107
+LRL D+C+ I+ ++ + + GG H +RS+ + LEPL +
Sbjct: 219 VLRLFHGHMDECLT-ISAADSDDQRRLVYYEGGAVCTH----ARSL-WRLEPLRISWSGS 272
Query: 108 -LFAKKPISIR------LRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELK----IE 156
L +P+ IR +T D VD ++ T F V E L+ +E
Sbjct: 273 HLRWGQPLRIRHVTTGRYLALTEDQGLVVVDACKAHTKATSFCFRVSKEKLDTAPKRDVE 332
Query: 157 SRGSPPDGGGEVILTIPIVDRLMAVRWLDE----------GMVKR---------IRGVSF 197
G P GE ++ V + + WL G++K+ + F
Sbjct: 333 GMGPPEIKYGE---SLCFVQHVASGLWLTYAAPDPKALRLGVLKKKAILHQEGHMDDALF 389
Query: 198 STRVSSQFENS--MIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETTSGCF 255
TR + + MIH+ G++N+ + + F+ G G P G +L E
Sbjct: 390 LTRCQQEESQAARMIHSTAGLYNQFIKGLDSFS----GKPRGSGPPAGPALPIEAV---I 442
Query: 256 ISVDTAVSYARGEVDEIEYDEKR 278
+S+ + Y +E++++EK+
Sbjct: 443 LSLQDLIGYFEPPSEELQHEEKQ 465
>pdb|4I96|A Chain A, Crystal Structure Of The N-terminal Two Domains Of The
Skeletal Muscle Ryanodine Receptor (rabbit Ryr1)
Residues 217-536
Length = 320
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 197 FSTRVSSQFENS--MIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETTSGC 254
F TR + + MIH+ G++N+ + + F+ G G P G +L E
Sbjct: 173 FLTRCQQEESQAARMIHSTAGLYNQFIKGLDSFS----GKPRGSGPPAGPALPIEAV--- 225
Query: 255 FISVDTAVSYARGEVDEIEYDEKR 278
+S+ + Y +E++++EK+
Sbjct: 226 ILSLQDLIGYFEPPSEELQHEEKQ 249
>pdb|4I1E|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant G249r
Length = 536
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 197 FSTRVSSQFENS--MIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETTSGC 254
F TR + + MIH+ G++N+ + + F+ G G P G +L E
Sbjct: 389 FLTRCQQEESQAARMIHSTAGLYNQFIKGLDSFS----GKPRGSGPPAGPALPIEAV--- 441
Query: 255 FISVDTAVSYARGEVDEIEYDEKR 278
+S+ + Y +E++++EK+
Sbjct: 442 ILSLQDLIGYFEPPSEELQHEEKQ 465
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,534,312
Number of Sequences: 62578
Number of extensions: 488075
Number of successful extensions: 940
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 24
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)