BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017072
(378 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein
OS=Arabidopsis thaliana GN=At5g22100 PE=2 SV=1
Length = 375
Score = 516 bits (1330), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/372 (70%), Positives = 314/372 (84%), Gaps = 2/372 (0%)
Query: 8 KRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEIN 67
K++KGSQS RQRL+LSTL+STP+ ID+IRAD+T+PGLRPHE++LLRLLE + DD VV+IN
Sbjct: 5 KKMKGSQSFRQRLLLSTLSSTPISIDEIRADETIPGLRPHEVNLLRLLEIVTDDAVVDIN 64
Query: 68 ETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKD 127
ETGT L+YKPG ++GG+NLVH C +SRSIGY+LEPL+L+GLF KKP+SIRL+GITNDP+D
Sbjct: 65 ETGTRLKYKPGTIVGGKNLVHSCSLSRSIGYYLEPLLLLGLFGKKPLSIRLKGITNDPRD 124
Query: 128 PSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEG 187
SVDTFRSTTL ++KRFGVP+E LELKIE+RG P+GGGEV+LT+P + L AV W++EG
Sbjct: 125 ASVDTFRSTTLNIIKRFGVPAEDLELKIEARGVAPNGGGEVLLTVPNIKTLSAVHWVEEG 184
Query: 188 MVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLV 247
MVK+IRG +FSTRV+S FE+SM AARGIFN LLPDVHIF DHRAG QAGKSPGYGISL
Sbjct: 185 MVKKIRGTTFSTRVTSDFEHSMRFAARGIFNNLLPDVHIFQDHRAGAQAGKSPGYGISLA 244
Query: 248 AETTSGCFISVDTAVSYAR-GEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDS 306
AETT+GCFIS DT VS R E E++ EK+E P ++ G ++AS LL+EI KGGVVDS
Sbjct: 245 AETTTGCFISADTTVSCERPDETGELDV-EKKERSPAEDTGVEVASWLLQEIEKGGVVDS 303
Query: 307 THQGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDPSTGTVILRCV 366
THQGLLFLLCALSE DVSKVRVG LSPY +E LRNI +FL ++F I PDP TGTVIL+C
Sbjct: 304 THQGLLFLLCALSEQDVSKVRVGTLSPYAVETLRNIKEFLGVKFAIKPDPLTGTVILKCT 363
Query: 367 GCGYKNLSRKLS 378
G G NLSRKLS
Sbjct: 364 GSGLINLSRKLS 375
>sp|Q54S38|RCL1_DICDI Probable RNA 3'-terminal phosphate cyclase-like protein
OS=Dictyostelium discoideum GN=rcl1 PE=1 SV=2
Length = 371
Score = 330 bits (847), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 166/367 (45%), Positives = 248/367 (67%), Gaps = 1/367 (0%)
Query: 9 RLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINE 68
+ +GS RQR++ STL+ + I +IR +D PGLR +E S LRL+++I + +EIN
Sbjct: 3 KFQGSTHFRQRIICSTLSGKAIRITNIRDEDEKPGLRDYEASFLRLVDKITNGSKIEINS 62
Query: 69 TGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDP 128
TGT++ Y PGI++GG+ + H+CG R IGYF+E LI +G FAK P+ I L GITN+ D
Sbjct: 63 TGTQITYIPGIIIGGKGITHECGTVRGIGYFVEALICLGPFAKAPLDITLNGITNNDIDL 122
Query: 129 SVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGM 188
++DT R+TTLP++++FG+ EGL +KI RG+PP+GGG V PIV L A++ +DEG
Sbjct: 123 TIDTIRTTTLPIIRKFGI-EEGLIIKIIKRGAPPNGGGSVNFKCPIVPHLKAIQLIDEGK 181
Query: 189 VKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVA 248
++RIRG++++TR+S QF N ++ A+G+ PDV+I +DH G ++G SPGYG++LVA
Sbjct: 182 IRRIRGIAYATRISPQFSNRVLDKAKGLLLEYTPDVYISSDHYKGNESGLSPGYGLTLVA 241
Query: 249 ETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTH 308
ETT+GC +S + + ++ +K P+++GE+ A LLEEI GG +DS +
Sbjct: 242 ETTTGCCLSAECMSNTGIATTEQQLQKQKSTSETPEDLGERTAFALLEEIFNGGCIDSHN 301
Query: 309 QGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDPSTGTVILRCVGC 368
Q L L L D+SKVR+GK++PY IE +R + DF + F I PD ++ TV+ C+G
Sbjct: 302 QSLALLFMVLCPEDISKVRLGKITPYTIEFIRQLRDFFGVTFKIEPDQNSKTVLFTCLGI 361
Query: 369 GYKNLSR 375
GYKN++R
Sbjct: 362 GYKNMAR 368
>sp|Q9Y2P8|RCL1_HUMAN RNA 3'-terminal phosphate cyclase-like protein OS=Homo sapiens
GN=RCL1 PE=1 SV=3
Length = 373
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 181/372 (48%), Positives = 240/372 (64%), Gaps = 17/372 (4%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G LRQRLVLSTL+ PV I IRA D PGLR E S +RLL++I + +EIN+TGT
Sbjct: 12 GCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTGT 71
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
L Y+PG++ GG ++ HDC V R IGY+LE L+ + F K P+ I LRG+TND DPSVD
Sbjct: 72 TLYYQPGLLYGG-SVEHDCSVLRGIGYYLESLLCLAPFMKHPLKIVLRGVTNDQVDPSVD 130
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
++T LPLLK+FG+ E ELKI RG PP GGGEV+ + P+ L ++ D G +KR
Sbjct: 131 VLKATALPLLKQFGIDGESFELKIVRRGMPPGGGGEVVFSCPVRKVLKPIQLTDPGKIKR 190
Query: 192 IRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETT 251
IRG+++S RVS Q N ++ +AR I N+ +PD++I+TDH G +GKSPG+G+SLVAETT
Sbjct: 191 IRGMAYSVRVSPQMANRIVDSARSILNKFIPDIYIYTDHMKGVNSGKSPGFGLSLVAETT 250
Query: 252 SGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGL 311
SG F+S + A S +G+ + P+++G A LLEEI +GG VDST+Q L
Sbjct: 251 SGTFLSAELA-SNPQGQGAAVL---------PEDLGRNCARLLLEEIYRGGCVDSTNQSL 300
Query: 312 LFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDP------STGTVILRC 365
LL L + DVSKV +G LSPY IE LR++ F I F I P V++ C
Sbjct: 301 ALLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQIMFKIETKPCGEELKGGDKVLMTC 360
Query: 366 VGCGYKNLSRKL 377
VG G+ NLS+ L
Sbjct: 361 VGIGFSNLSKTL 372
>sp|Q2KHX8|RCL1_BOVIN RNA 3'-terminal phosphate cyclase-like protein OS=Bos taurus
GN=RCL1 PE=2 SV=1
Length = 373
Score = 320 bits (819), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 180/383 (46%), Positives = 242/383 (63%), Gaps = 17/383 (4%)
Query: 1 MGKKTSYKRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICD 60
M + G LRQRLVLSTL+ PV I IRA D PGLR E S +RLL+++ +
Sbjct: 1 MASQAHSLSYSGCNFLRQRLVLSTLSGRPVKIRKIRARDDNPGLRDFEASFIRLLDKVTN 60
Query: 61 DCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRG 120
+EIN+TGT L Y+PG++ GG ++ HDC V R IGY+LE L+ + F K P+ I LRG
Sbjct: 61 GSRIEINQTGTTLYYQPGLLYGG-SMEHDCSVLRGIGYYLESLLCLAPFMKHPLRIVLRG 119
Query: 121 ITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMA 180
+TND DPSVD ++T LPLLK+FG+ E ELK+ RG PP GGGEV + P+ L
Sbjct: 120 VTNDQVDPSVDVLKATALPLLKQFGIDGESFELKVVRRGMPPGGGGEVFFSCPVRKVLKP 179
Query: 181 VRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSP 240
++ +D G +KRIRG+++S RVS Q N ++ +AR I N+ +PD++I+TDH G +GKSP
Sbjct: 180 IQLIDPGKIKRIRGMAYSVRVSPQMANRIVDSARSILNKFIPDIYIYTDHMKGINSGKSP 239
Query: 241 GYGISLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAK 300
G+G+SLVAETT+G F+S + A S +G+ M P+++G A LLEEI +
Sbjct: 240 GFGLSLVAETTNGTFLSAELA-SNPQGQ---------GAAMLPEDLGRNCARLLLEEIYR 289
Query: 301 GGVVDSTHQGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDP---- 356
GG VDST+Q L LL L + DVSKV +G LSPY IE LR++ F I F I P
Sbjct: 290 GGCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQIMFKIETKPCGEE 349
Query: 357 --STGTVILRCVGCGYKNLSRKL 377
V++ CVG G+ NLS+ L
Sbjct: 350 LKGGDKVLMTCVGIGFSNLSKTL 372
>sp|Q9JJT0|RCL1_MOUSE RNA 3'-terminal phosphate cyclase-like protein OS=Mus musculus
GN=Rcl1 PE=2 SV=1
Length = 373
Score = 318 bits (816), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 179/372 (48%), Positives = 241/372 (64%), Gaps = 17/372 (4%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G LRQRLVLSTL+ PV I IRA D PGLR E S +RLL++I + +EIN+TGT
Sbjct: 12 GCNFLRQRLVLSTLSGRPVKIRRIRARDDNPGLRDFEASFIRLLDKITNGSRIEINQTGT 71
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
L Y+PG++ GG ++ HDC V R IGY+LE L+ + F K P+ I LRG+TND DPSVD
Sbjct: 72 TLYYQPGLLYGG-SVEHDCSVLRGIGYYLEALLCLAPFMKHPLKIVLRGVTNDQVDPSVD 130
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
++T LPLLK+FG+ E ELKI RG PP GGGEV+ + P+ L V+ D G +KR
Sbjct: 131 VLKATALPLLKQFGIDGESFELKILRRGMPPGGGGEVLFSCPVRKVLKPVQLTDPGKIKR 190
Query: 192 IRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETT 251
IRG+++S RVS Q N ++ +AR I N+ +PD++I+TDH G +GKSPG+G+SLVAETT
Sbjct: 191 IRGMAYSVRVSPQMANRIVDSARSILNKFIPDIYIYTDHMKGVSSGKSPGFGLSLVAETT 250
Query: 252 SGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGL 311
+G F+S + A S +G+ + P+++G A LLEEI +GG VDST+Q L
Sbjct: 251 NGTFLSAELA-SNPQGQGAAVL---------PEDLGRNCAKLLLEEIYRGGCVDSTNQSL 300
Query: 312 LFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDP------STGTVILRC 365
+ LL L + DVSKV +G LSPY IE LR++ F + F + P V++ C
Sbjct: 301 VLLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQVMFKVETKPCGEELKGGDKVLMTC 360
Query: 366 VGCGYKNLSRKL 377
VG G+ NLS+ L
Sbjct: 361 VGIGFSNLSKTL 372
>sp|P56175|RCL1_DROME Probable RNA 3'-terminal phosphate cyclase-like protein
OS=Drosophila melanogaster GN=Rtc1 PE=2 SV=3
Length = 384
Score = 292 bits (748), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/382 (42%), Positives = 230/382 (60%), Gaps = 27/382 (7%)
Query: 11 KGSQSLRQRLVLSTLASTPVLIDDIRADD-TMPGLRPHEISLLRLLERICDDCVVEINET 69
+GS L+QRL+L+ L+ PV I IR++D T PGLR +EISL+RLL++I + +E+N
Sbjct: 14 RGSNFLKQRLILACLSGKPVKISQIRSEDETAPGLREYEISLIRLLDKITNGTKIELNPA 73
Query: 70 GTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPS 129
GT + + PG++ GG+ L HDC V R IGY+L+ LI +G F K P+ LRG+TN PS
Sbjct: 74 GTSVMFSPGLLHGGQ-LNHDCCVQRGIGYYLDALIALGPFCKSPLQCTLRGVTNSKDSPS 132
Query: 130 VDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMV 189
VD + L LLKRF + EGLELK+ RG P GGGE+I P+ L A+++ +GMV
Sbjct: 133 VDHIKGAALSLLKRFLLVDEGLELKVVRRGVAPLGGGEIIFRCPVRKSLRAIQFQSQGMV 192
Query: 190 KRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAE 249
KRIRG ++ +VS N + AA+G + LPDV+I+TD G +G SPG+GI L+AE
Sbjct: 193 KRIRGTVYACKVSPAMANRTVEAAKGCMLKFLPDVYIYTDQNKGKMSGNSPGFGICLIAE 252
Query: 250 TTSGCFISVDTAVSYARGEVDEIEYDEKRELMP--PDNVGEQIASCLLEEIAKGGVVDST 307
TT G + D S R E+ E P P+N+G+++A LL+EI +GG VDS+
Sbjct: 253 TTDGVCFAAD-CCSNTR---------EESEDTPSIPENLGKEVALRLLDEIYRGGCVDSS 302
Query: 308 HQGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDP----------- 356
+Q L L AL + VSK G LS Y + L+++ DF I F + +P
Sbjct: 303 YQWLAALYIALGQKHVSKFLTGALSNYTVHFLQHLRDFFSITFK-LENPEAEDEDEAENV 361
Query: 357 -STGTVILRCVGCGYKNLSRKL 377
V++ CVG GY N+++++
Sbjct: 362 RGAQKVLMACVGIGYTNINKRV 383
>sp|Q09870|RCL1_SCHPO Probable RNA 3'-terminal phosphate cyclase-like protein
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC12G12.06c PE=3 SV=1
Length = 363
Score = 262 bits (670), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 154/374 (41%), Positives = 224/374 (59%), Gaps = 22/374 (5%)
Query: 8 KRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEIN 67
KR KG + L RLVL+TL+ TP+ ++ I D+ PG++ +++S LRLLE++ + V+EI+
Sbjct: 7 KRFKGCEYLTHRLVLATLSGTPIRVEGIYPDEADPGVKDYQVSFLRLLEKLTNGSVIEIS 66
Query: 68 ETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKD 127
TGT Y+PG ++GGR +VHDC ++ IGYFLEP++++ LFAK P S+ L G+T+ +D
Sbjct: 67 YTGTSFIYRPGNIIGGR-VVHDCPTTKGIGYFLEPILILCLFAKTPTSLTLTGVTSSNED 125
Query: 128 PSVDTFRSTTLP-LLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIV-DRLMAVRWLD 185
VD R++ LP L KRF V E LEL+I RGS P GGGEV P++ + L +R +
Sbjct: 126 IGVDVLRTSVLPSLQKRFQVGDE-LELRILKRGSAPGGGGEVNFLCPVIKESLPPIRLSE 184
Query: 186 EGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGIS 245
G V RIRG++ STRVS F N ++ +ARG+ N +PDV I+TD R G + G SPGY I+
Sbjct: 185 FGRVFRIRGIASSTRVSPAFANRLVESARGVLNPFIPDVFIYTDVRRGDECGNSPGYSIT 244
Query: 246 LVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVD 305
LVAET GC + + GE E P++VG A LLE I GG VD
Sbjct: 245 LVAETNKGCSYAAEHC-----GEAGET----------PEDVGSFCAKKLLEVIESGGCVD 289
Query: 306 STHQGLLFLLCALSEPDVSKVRVGKL--SPYGIEMLRNIFDFLDIRFDIMPDPSTGTVIL 363
Q LS DV+ + VG+L + + LR++ + + + +G V +
Sbjct: 290 PYTQPSTLTGMLLSSEDVNTIVVGQLGITSQLVVFLRDVKALFNCEYR-FKELESGQVEM 348
Query: 364 RCVGCGYKNLSRKL 377
C+G GY N++R++
Sbjct: 349 SCLGKGYLNVNRRI 362
>sp|Q23400|RCL1_CAEEL Probable RNA 3'-terminal phosphate cyclase-like protein
OS=Caenorhabditis elegans GN=ZK1127.5 PE=3 SV=2
Length = 379
Score = 231 bits (590), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 209/384 (54%), Gaps = 29/384 (7%)
Query: 10 LKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINET 69
G R RL S L+ P+ I +IR +D PG+R E L+ LLE++ + VEI+ T
Sbjct: 8 FSGCNFFRIRLAYSILSGRPIRIINIRKNDDRPGIRDFESKLIGLLEKVTNGTKVEISRT 67
Query: 70 GTELEYKPGIVMGGR-NLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDP 128
GT++ ++PG++ GG NL DCG R I YFLEPL+L+ F K P+ I+L+G+TN P +
Sbjct: 68 GTQVIFRPGMITGGVVNL--DCGTERCISYFLEPLLLLSPFCKVPMVIKLKGVTNAPGEI 125
Query: 129 SVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGM 188
SVD +++ L + +F + E L++KI++RG P+GGG V+ T PIV L V+ G
Sbjct: 126 SVDGMKASWLKVYNKFVLNDEKLDIKIQARGLKPEGGGVVVFTAPIVKTLRPVKRQQVGK 185
Query: 189 VKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVA 248
V +IRG ++ T+V+ MI AA+ + + DV+I D R G G SPGYG+ L A
Sbjct: 186 VCKIRGQAYVTKVTPSLAYRMIDAAKKAMHGYISDVYITVDQRKGDAGGASPGYGLFLTA 245
Query: 249 ETTSGCFISVDTAVSYARGEVDEIEYDEKRELMP--PDNVGEQIASCLLEEIAKGGVVDS 306
ETT G + A+S +GE +P P+++G + LL++I GG +DS
Sbjct: 246 ETTEGVIYQAE-AISRPKGESG----------VPILPEDIGIEAGHALLQQIYMGGALDS 294
Query: 307 THQGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI----------MPDP 356
+ Q L L DVS G L Y + LR++ F +I F + D
Sbjct: 295 SAQILASTFMTLCPKDVSHFLYGPLPMYSVHALRHLKQFFEIEFKMEDFKKTLKEEEADL 354
Query: 357 STGT---VILRCVGCGYKNLSRKL 377
TG+ ++ VG GY NL++ +
Sbjct: 355 KTGSADKAMVTAVGVGYSNLNKTI 378
>sp|Q08096|RCL1_YEAST RNA 3'-terminal phosphate cyclase-like protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RCL1 PE=1
SV=1
Length = 367
Score = 212 bits (540), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 210/380 (55%), Gaps = 28/380 (7%)
Query: 7 YKRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEI 66
Y +GSQ+ R R+VL+TL+ P+ I+ IR+ D PGL+ +E+S LRL+E + + V+EI
Sbjct: 8 YTTFQGSQNFRLRIVLATLSGKPIKIEKIRSGDLNPGLKDYEVSFLRLIESVTNGSVIEI 67
Query: 67 NETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPK 126
+ TGT + Y+PGI++GG + H C S+ +GYF+EP++ + F+KK SI +GIT
Sbjct: 68 SYTGTTVIYRPGIIVGGAS-THICPSSKPVGYFVEPMLYLAPFSKKKFSILFKGITASHN 126
Query: 127 DPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMA----VR 182
D ++ + +P++++FGV L RGSPP GGGEV L +VD L+A +
Sbjct: 127 DAGIEAIKWGLMPVMEKFGV--RECALHTLKRGSPPLGGGEVHL---VVDSLIAQPITMH 181
Query: 183 WLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGY 242
+D ++ I GV++STRVS N MI A+ + L +V+I D G +GKSPG+
Sbjct: 182 EIDRPIISSITGVAYSTRVSPSLVNRMIDGAKKVLKNLQCEVNITADVWRGENSGKSPGW 241
Query: 243 GISLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGG 302
GI+LVA++ + + + G+ I P+ +GE++A LLEEI+K
Sbjct: 242 GITLVAQSKQKGW----SYFAEDIGDAGSI----------PEELGEKVACQLLEEISKSA 287
Query: 303 VVDSTHQGLLFLLCALSEPDVSKVRVGK--LSPYGIEMLRNIFDFLDIRFDIMP--DPST 358
V L + + + D+ ++R+ K + I +LR+I + + P +
Sbjct: 288 AVGRNQLPLAIVYMVIGKEDIGRLRINKEQIDERFIILLRDIKKIFNTEVFLKPVDEADN 347
Query: 359 GTVILRCVGCGYKNLSRKLS 378
+I G G+ N S+K++
Sbjct: 348 EDMIATIKGIGFTNTSKKIA 367
>sp|Q2HJ88|RTCA_BOVIN RNA 3'-terminal phosphate cyclase OS=Bos taurus GN=RTCA PE=2 SV=1
Length = 366
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 161/370 (43%), Gaps = 31/370 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR LS L P+ + IRA + PGLRP +S L ++ +CD + T
Sbjct: 16 GGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRDLCDGQLEGAEIGST 75
Query: 72 ELEYKPGIVMGGRNLVH--DCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPS 129
E+ + P + GG VH D + S+ ++ + LFA P +RL+G TN P
Sbjct: 76 EITFTPEKIKGG---VHTADTKTAGSVCLLMQVSMPCVLFAACPSELRLKGGTNAEMAPQ 132
Query: 130 VDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMV 189
+D P++++FG I+ RG P GGGEVI+ + V +L + D G V
Sbjct: 133 IDYTAMVFKPIVEKFGFT---FNCDIKMRGYYPKGGGEVIVRMSPVKQLSPINLTDRGCV 189
Query: 190 KRIRGVSFSTRV-SSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQ-AGKSPGYGISLV 247
+I G +F V + M AA + + D+++ P+ G GI ++
Sbjct: 190 TKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAFGNGNGIIII 249
Query: 248 AETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDST 307
AET++GC + S + V+ D VG + A LL + GG VD
Sbjct: 250 AETSTGCLFA---GSSLGKRGVN------------ADKVGIEAAEMLLANLRHGGAVDEY 294
Query: 308 HQGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMP-----DPSTGTVI 362
Q L + AL+ +S+++ G ++ + + +F + D S T I
Sbjct: 295 LQDQLIIFMALAS-GISRIKTGPVTLHTQTAIHFAEQLAKAKFTVKKSEDEEDASKDTYI 353
Query: 363 LRCVGCGYKN 372
+ C G G N
Sbjct: 354 IECQGIGMTN 363
>sp|Q9D7H3|RTCA_MOUSE RNA 3'-terminal phosphate cyclase OS=Mus musculus GN=RtcA PE=2 SV=2
Length = 366
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 161/369 (43%), Gaps = 29/369 (7%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR LS L P+ + IRA + PGLRP +S L ++ +C + T
Sbjct: 16 GGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVRDLCGGHLEGAEIGST 75
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
E+ + P + GG + D + S+ ++ + LFA P +RL+G TN P +D
Sbjct: 76 EITFTPEKIRGGVHTA-DTKTAGSVCLLMQVSMPCVLFAASPSELRLKGGTNAEMAPQID 134
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
P+ ++FG I++RG P GGGEVI+ + V RL + D G V +
Sbjct: 135 YTMMVFKPIAEKFGFT---FNCDIKTRGYYPKGGGEVIVRVSPVKRLDPINLTDRGSVTK 191
Query: 192 IRGVSFSTRV-SSQFENSMIHAARGIFNRLLPDVHIFTD--HRAGPQAGKSPGYGISLVA 248
I G +F V + M AA + + D+++ A QA + G GI +VA
Sbjct: 192 IYGRAFVAGVLPLKVAKDMAAAAVRCIRKEIRDLYVSIQPVQEARDQAFGN-GSGIIIVA 250
Query: 249 ETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTH 308
ET++GC + S + V+ D VG + A LL + GG VD
Sbjct: 251 ETSTGCLFA---GSSLGKRGVN------------ADKVGIEAAEMLLANLRHGGTVDEYL 295
Query: 309 QGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMP-----DPSTGTVIL 363
Q L + AL+ +S+++ G ++ + + +F + D + T ++
Sbjct: 296 QDQLIIFMALAN-GISRIKTGSVTLHTQTAIHFAEQLAKAKFTVKKSEEEEDATKDTYVI 354
Query: 364 RCVGCGYKN 372
C G G N
Sbjct: 355 ECEGIGMAN 363
>sp|Q4R3J0|RTCA_MACFA RNA 3'-terminal phosphate cyclase OS=Macaca fascicularis GN=RTCA
PE=2 SV=1
Length = 366
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 160/368 (43%), Gaps = 27/368 (7%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR LS L P+ + IRA + PGLRP +S L ++ +CD + T
Sbjct: 16 GGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRDLCDGRLEGAEIGST 75
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
E+ + P + GG + D + S+ ++ + LFA P + L+G TN P +D
Sbjct: 76 EITFTPEKIKGGIHTA-DTKTAGSVCLLMQVSMPCVLFAASPSELHLKGGTNAEMAPQID 134
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
P++++FG I++RG P GGGEVI+ + V +L + D G V +
Sbjct: 135 YTVMVFKPIVEKFGFR---FNCDIKTRGYYPKGGGEVIVRMSPVKQLNPINLTDRGCVTK 191
Query: 192 IRGVSFSTRV-SSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQ-AGKSPGYGISLVAE 249
I G +F V + M AA + + D+++ P+ G GI ++AE
Sbjct: 192 IYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAFGNGNGIIIIAE 251
Query: 250 TTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQ 309
T++GC + S + V+ D VG + A LL + GG VD Q
Sbjct: 252 TSTGCLFA---GSSLGKRGVN------------ADKVGIEAAEMLLANLRHGGTVDEYLQ 296
Query: 310 GLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMP-----DPSTGTVILR 364
L + AL+ VS+++ G ++ + + +F + D S T I+
Sbjct: 297 DQLIVFMALAN-GVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEEDASKDTYIIE 355
Query: 365 CVGCGYKN 372
C G G N
Sbjct: 356 CQGIGMTN 363
>sp|Q5R7P3|RTCA_PONAB RNA 3'-terminal phosphate cyclase OS=Pongo abelii GN=RTCA PE=2 SV=1
Length = 366
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 160/368 (43%), Gaps = 27/368 (7%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR LS L P+ + IRA + PGLRP +S L ++ +CD + T
Sbjct: 16 GGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRDLCDGQLEGAEIGST 75
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
E+ + P + GG + D + S+ ++ + LFA P + L+G TN P +D
Sbjct: 76 EITFTPEKIKGGIHTA-DTKTAGSVCLLMQVSMPCVLFAASPSKLHLKGGTNAEMAPQID 134
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
P++++FG I++RG P GGGEVI+ + V +L V D G V +
Sbjct: 135 YTVMVFKPIVEKFGFV---FNCDIKTRGYYPKGGGEVIVRMSPVKQLDPVNLTDRGCVTK 191
Query: 192 IRGVSFSTRV-SSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQ-AGKSPGYGISLVAE 249
I G +F T V + M AA + + D ++ P+ G GI ++AE
Sbjct: 192 IYGRAFVTGVLPFKVAKDMAAAAARCIRKEIRDSYVNIQPVQEPKDQAFGNGNGIIIIAE 251
Query: 250 TTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQ 309
T++GC + S + V+ D VG A LL + GG VD Q
Sbjct: 252 TSTGCLFA---GSSLGKRGVN------------ADKVGIGAAEMLLANLRHGGTVDEYLQ 296
Query: 310 GLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMP-----DPSTGTVILR 364
L + AL+ VS+++ G ++ + + +F + D + GT I+
Sbjct: 297 DQLIVFMALAN-GVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEEDAAKGTYIIE 355
Query: 365 CVGCGYKN 372
C G G N
Sbjct: 356 CQGIGMTN 363
>sp|O00442|RTCA_HUMAN RNA 3'-terminal phosphate cyclase OS=Homo sapiens GN=RTCA PE=1 SV=1
Length = 366
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 160/368 (43%), Gaps = 27/368 (7%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR LS L P+ + IRA + PGLRP +S L ++ +CD + T
Sbjct: 16 GGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRDLCDGQLEGAEIGST 75
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
E+ + P + GG + D + S+ ++ + LFA P + L+G TN P +D
Sbjct: 76 EITFTPEKIKGGIHTA-DTKTAGSVCLLMQVSMPCVLFAASPSELHLKGGTNAEMAPQID 134
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
P++++FG I++RG P GGGEVI+ + V +L + + G V +
Sbjct: 135 YTVMVFKPIVEKFGFI---FNCDIKTRGYYPKGGGEVIVRMSPVKQLNPINLTERGCVTK 191
Query: 192 IRGVSFSTRV-SSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQ-AGKSPGYGISLVAE 249
I G +F V + M AA + + D+++ P+ G GI ++AE
Sbjct: 192 IYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDLYVNIQPVQEPKDQAFGNGNGIIIIAE 251
Query: 250 TTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQ 309
T++GC + S + V+ D VG + A LL + GG VD Q
Sbjct: 252 TSTGCLFA---GSSLGKRGVN------------ADKVGIEAAEMLLANLRHGGTVDEYLQ 296
Query: 310 GLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMP-----DPSTGTVILR 364
L + AL+ VS+++ G ++ + + +F + D + T I+
Sbjct: 297 DQLIVFMALAN-GVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEEDAAKDTYIIE 355
Query: 365 CVGCGYKN 372
C G G N
Sbjct: 356 CQGIGMTN 363
>sp|A8A9W2|RTCA_IGNH4 RNA 3'-terminal phosphate cyclase OS=Ignicoccus hospitalis (strain
KIN4/I / DSM 18386 / JCM 14125) GN=rtcA PE=3 SV=1
Length = 353
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 133/298 (44%), Gaps = 26/298 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR + LS + PV I +IRA PGLR + ++ L + D V + T
Sbjct: 12 GGQILRTSVALSAVTLKPVRIFNIRAKRKNPGLRRQHMVAVKALAEMTDAEVRGLELGST 71
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
E+ + P + G D G + S+ L+ + LFA + ++LRG T+ P P VD
Sbjct: 72 EIVFIPKTLKAG-TFRFDIGTAGSVSLVLQAVTPAALFAPGEVRVQLRGGTDVPMSPPVD 130
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
R PLL+RFG + EL ++ RG P GGGEV VD L ++ G V +
Sbjct: 131 YLRFVFYPLLERFGAKT---ELVLKRRGHYPKGGGEVEFASRPVDSLTQWGEVERGEVLK 187
Query: 192 IRGVSFSTRVSSQFENSMIHAARGIFNRL-LPDVHI---FTDHRAGPQAGKSPGYGISLV 247
+RG+S ++ AA + + L +V I + P G PG GI L
Sbjct: 188 VRGLSHCVKLPKHVAERQAKAAEEVLKKSGLKNVDIDLEWYPPERDPHLG--PGSGIVLW 245
Query: 248 AETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVD 305
A T + D+ ARG+ E VGE+ A LLE+++ G +D
Sbjct: 246 A-ITERSLLGADSL--GARGKRAE-------------RVGEEAARKLLEDLSTGKALD 287
>sp|Q8ZST4|RTCA_PYRAE RNA 3'-terminal phosphate cyclase OS=Pyrobaculum aerophilum (strain
ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rtcA PE=3 SV=1
Length = 348
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 155/360 (43%), Gaps = 25/360 (6%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR + LS L PV I +IRA PGL+P ++ +++ + D V + T
Sbjct: 13 GGQILRTSIALSALLGRPVEIVNIRAKRANPGLQPQHLTGVKVAALLTDAEVKGAEKGST 72
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
L ++P + G N D G + SI ++ L + L+A P I + G T+ P +D
Sbjct: 73 RLYFEPKTLKCG-NFSIDIGTAGSISLIVQTLAPILLYAPCPTQITVTGGTDVAWAPPID 131
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
R +L+RFG L +++ RG P GGG ++ V RL AV + G V +
Sbjct: 132 YMRFVFTKVLERFGAK---LSIELIRRGHYPRGGGRAVVRAEPVKRLKAVESEEFGNVVK 188
Query: 192 IRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETT 251
I G+S + + AAR +++ D I + R G PG G+ + A +
Sbjct: 189 ISGISHAVNLPPHVAERQAKAAREELSKMGLDADIAIEVR---NDGLGPGSGVVIWAVSD 245
Query: 252 SGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGL 311
+G I D+ RG+ P + VG++ A L+ + VD +
Sbjct: 246 AGNVIGGDSLGE--RGK-------------PAETVGKEAAQKLIAVLKTRASVDPHMADM 290
Query: 312 LFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDPSTGTVILRCVGCGYK 371
L AL+E S++ + + + + I FL ++F M G + G GY
Sbjct: 291 AVLYMALAEGR-SRISTSEETMHLKTNMYIIEQFLRVKFSTMEK--AGRYTIEVEGVGYN 347
>sp|A3MXQ7|RTCA_PYRCJ RNA 3'-terminal phosphate cyclase OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rtcA PE=3 SV=1
Length = 347
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 154/342 (45%), Gaps = 25/342 (7%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR + LS L PV + +IRA PGL+P ++ + + D + + T
Sbjct: 12 GGQILRTAIALSALLGVPVEVFNIRAKRANPGLQPQHLTGVNAAALLTDAELEGAAKGST 71
Query: 72 ELEYKPGIVM-GGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
L +KP + GG + D G + SI ++ L + LFA P+ + + G T+ P +
Sbjct: 72 RLVFKPKTIKCGGFQI--DIGTAGSISLVIQTLTPIALFAPCPVRLSITGGTDVAWAPPI 129
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R P++ RFG +++++ RG P GGG V + + VD L V +D G V
Sbjct: 130 DYMRFVFAPVVGRFG---GRVKIEVLRRGHYPKGGGRVEVEVAPVDVLKPVDAVDFGKVL 186
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
+IRG+S + + + AA + I T+ R G PG G+ L AE+
Sbjct: 187 KIRGISHAVNLPAHVAERQARAAAEALAKEGYAADISTEVR---NDGLGPGSGVVLWAES 243
Query: 251 TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQG 310
G + D A GE + P + VG + A LL + G VDS
Sbjct: 244 DVGNVVGGD-----ALGERGK----------PAEAVGREAAEKLLTALKSGASVDSHMAD 288
Query: 311 LLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI 352
+ + AL+E VS++ +L+ + + + FL ++F +
Sbjct: 289 MAVVYMALAE-GVSRITTPELTLHLQTNMYIVERFLPVKFRV 329
>sp|C4KKE6|RTCA_SULIK RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=rtcA PE=3 SV=1
Length = 337
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 161/342 (47%), Gaps = 30/342 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I +IRA+ PGL+ + ++ ++ I + + +E G+
Sbjct: 12 GGQILRTSLTLSVITGKPFRIFNIRANRPNPGLQRQHLWAVKAMKMISN-AETKGDEVGS 70
Query: 72 -ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
EL + P + G N+ D G + S+ ++ ++ K + IR++G T+ PK P++
Sbjct: 71 KELIFVPHEIKGNTNIDIDVGTAGSVTLIIQTVLPA--IINKNVRIRIKGGTDVPKSPTI 128
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R L +L++ G+ + +L + RG P+GGGEVI+ + A L+ G +
Sbjct: 129 DYIRLVYLEILRKIGIEA---KLNLIKRGHYPEGGGEVIIE-NVNGNPSAFSLLELGKLT 184
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
I+G+S + + + +++AR I ++L + I TD R G S G GI+L A
Sbjct: 185 IIKGISHVSSLPAHIAERQMNSAREILSKLGVPIEIQTDVRQGEV---SKGSGIALAA-I 240
Query: 251 TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQG 310
I D+ RG+ EI VGE+ A L++ + VD
Sbjct: 241 GEKSIIGADSL--GERGKRAEI-------------VGEEAARILIDNLNTKASVDIHMSD 285
Query: 311 LLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI 352
+L + +L + + + +E+++ FLDI+ D+
Sbjct: 286 MLMIFASLYGGEYIGAELTSHAYTNMEIIKK---FLDIKIDV 324
>sp|C3NMT8|RTCA_SULIN RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rtcA PE=3 SV=1
Length = 337
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 160/342 (46%), Gaps = 30/342 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I +IRA+ PGL+ + ++ ++ I + + +E G+
Sbjct: 12 GGQILRTSLTLSIITGKPFRIFNIRANRPNPGLQRQHLWAVKAMKMISN-AETKGDEVGS 70
Query: 72 -ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
EL + P + G N+ D G + S+ ++ ++ K + IR++G T+ PK P++
Sbjct: 71 KELIFVPHEIKGNTNIDMDVGTAGSVTLIIQTVLPA--IINKNVRIRIKGGTDVPKSPTI 128
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R L +L++ G+ + +L + RG P+GGGEVI+ + A L+ G +
Sbjct: 129 DYIRLVYLEILRKIGIEA---KLNLIKRGHYPEGGGEVIIE-NVNGNPSAFSLLELGKLT 184
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
I+G+S + + + +++AR I ++L + I TD R G S G GI+L A
Sbjct: 185 IIKGISHVSSLPAHIAERQMNSAREILSKLGVPIEIETDVRQGEV---SKGSGIALAA-I 240
Query: 251 TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQG 310
I D+ RG+ EI VGE+ A L+ + VD
Sbjct: 241 GEKSIIGADSL--GERGKRAEI-------------VGEEAARILINNLNTKASVDIHMSD 285
Query: 311 LLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI 352
+L + +L + + + +E+++ FLDI+ D+
Sbjct: 286 MLMIFASLYGGEYIGAELTSHAYTNMEIIK---KFLDIKIDV 324
>sp|C3N969|RTCA_SULIY RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rtcA PE=3 SV=1
Length = 337
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 160/342 (46%), Gaps = 30/342 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I +IRA+ PGL+ + ++ ++ I + + +E G+
Sbjct: 12 GGQILRTSLTLSVITGKPFRIFNIRANRPNPGLQRQHLWAVKAMKMISN-AETKGDEVGS 70
Query: 72 -ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
EL + P + G N+ D G + S+ ++ ++ K + IR++G T+ PK P++
Sbjct: 71 KELIFVPHEIKGNTNIDIDVGTAGSVTLIIQTVLPA--IINKNVRIRIKGGTDVPKSPTI 128
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R L +L++ G+ + +L + RG P+GGGEVI+ + A L+ G +
Sbjct: 129 DYIRLVYLEILRKIGIEA---KLNLIKRGHYPEGGGEVIIE-NVNGNPSAFSLLELGKLT 184
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
I+G+S + + + +++AR I ++L + I TD R G S G GI+L A
Sbjct: 185 IIKGISHVSSLPAHIAERQMNSAREILSKLGVPIEIETDVRQGEV---SKGSGIALAA-I 240
Query: 251 TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQG 310
I D+ RG+ EI VGE+ A L+ + VD
Sbjct: 241 GEKSIIGADSL--GERGKRAEI-------------VGEEAARILINNLNTKASVDIHMSD 285
Query: 311 LLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI 352
+L + +L + + + +E+++ FLDI+ D+
Sbjct: 286 MLMIFASLYGGEYIGAELTSHAYTNMEIIK---KFLDIKIDV 324
>sp|C3MKC1|RTCA_SULIL RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rtcA PE=3 SV=1
Length = 337
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 160/342 (46%), Gaps = 30/342 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I +IRA+ PGL+ + ++ ++ I + + +E G+
Sbjct: 12 GGQILRTSLTLSVITGKPFRIFNIRANRPNPGLQRQHLWAVKAMKMISN-AETKGDEVGS 70
Query: 72 -ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
EL + P + G N+ D G + S+ ++ ++ K + IR++G T+ PK P++
Sbjct: 71 KELIFVPHEIKGNTNIDIDVGTAGSVTLIIQTVLPA--IINKNVRIRIKGGTDVPKSPTI 128
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R L +L++ G+ + +L + RG P+GGGEVI+ + A L+ G +
Sbjct: 129 DYIRLVYLEILRKIGIEA---KLNLIKRGHYPEGGGEVIIE-NVNGNPSAFSLLELGKLT 184
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
I+G+S + + + +++AR I ++L + I TD R G S G GI+L A
Sbjct: 185 IIKGISHVSSLPAHIAERQMNSAREILSKLGVPIEIETDVRQGEV---SKGSGIALAA-I 240
Query: 251 TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQG 310
I D+ RG+ EI VGE+ A L+ + VD
Sbjct: 241 GEKSIIGADSL--GERGKRAEI-------------VGEEAARILINNLNTKASVDIHMSD 285
Query: 311 LLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI 352
+L + +L + + + +E+++ FLDI+ D+
Sbjct: 286 MLMIFASLYGGEYIGAELTSHAYTNMEIIK---KFLDIKIDV 324
>sp|C3MU91|RTCA_SULIM RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=rtcA PE=3 SV=1
Length = 337
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 30/342 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I +IRA+ PGL+ + ++ ++ I + + +E G+
Sbjct: 12 GGQILRTSLTLSVITGKPFRIFNIRANRPNPGLQRQHLWAVKAMKMISN-AETKGDEVGS 70
Query: 72 -ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
EL + P + G N+ D G + S+ ++ ++ K + IR++G T+ PK P++
Sbjct: 71 KELIFVPHEIKGNINIDIDVGTAGSVTLIIQTVLPA--IINKNVRIRIKGGTDVPKSPTI 128
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R L +L++ G+ + +L + RG P+GGGEVI+ + A L+ G +
Sbjct: 129 DYIRLVYLEILRKIGIEA---KLNLIKRGHYPEGGGEVIIE-NVNGNPSAFSLLELGKLT 184
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
I+G+S + + + +++AR + ++L + I TD R G S G GI+L A
Sbjct: 185 IIKGISHVSSLPAHIAERQMNSARELLSKLGVPIEIQTDVRQGEV---SKGSGIALAA-I 240
Query: 251 TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQG 310
I D+ RG+ EI VGE+ A L++ + VD
Sbjct: 241 GEKSIIGADSLGE--RGKRAEI-------------VGEEAARILIDNLNTKASVDIHMSD 285
Query: 311 LLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI 352
+L + +L + + + +E+++ FLDI+ D+
Sbjct: 286 MLMIFASLYGGEYIGAELTSHAYTNMEIIKK---FLDIKIDV 324
>sp|C3N179|RTCA_SULIA RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain
M.16.27) GN=rtcA PE=3 SV=1
Length = 337
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 30/342 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I +IRA+ PGL+ + ++ ++ I + + +E G+
Sbjct: 12 GGQILRTSLTLSVITGKPFRIFNIRANRPNPGLQRQHLWAVKAMKMISN-AETKGDEVGS 70
Query: 72 -ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
EL + P + G N+ D G + S+ ++ ++ K + IR++G T+ PK P++
Sbjct: 71 KELIFVPHEIKGNINIDIDVGTAGSVTLIIQTVLPA--IINKNVRIRIKGGTDVPKSPTI 128
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R L +L++ G+ + +L + RG P+GGGEVI+ + A L+ G +
Sbjct: 129 DYIRLVYLEILRKIGIEA---KLNLIKRGHYPEGGGEVIIE-NVNGNPSAFSLLELGKLT 184
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
I+G+S + + + +++AR + ++L + I TD R G S G GI+L A
Sbjct: 185 IIKGISHVSSLPAHIAERQMNSARELLSKLGVPIEIQTDVRQGEV---SKGSGIALAA-I 240
Query: 251 TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQG 310
I D+ RG+ EI VGE+ A L++ + VD
Sbjct: 241 GEKSIIGADSLGE--RGKRAEI-------------VGEEAARILIDNLNTKASVDIHMSD 285
Query: 311 LLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI 352
+L + +L + + + +E+++ FLDI+ D+
Sbjct: 286 MLMIFASLYGGEYIGAELTSHAYTNMEIIKK---FLDIKIDV 324
>sp|A8MAV7|RTCA_CALMQ RNA 3'-terminal phosphate cyclase OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=rtcA PE=3 SV=1
Length = 354
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 143/313 (45%), Gaps = 25/313 (7%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I +IRA + PGL+P ++ + RI + V +
Sbjct: 12 GGQILRTALALSIITGKPFRIINIRARRSNPGLQPQHLASVMAAARISNAKVDGAYKGSL 71
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLI-LVGLFAKKPISIRLRGITNDPKDPSV 130
L ++PG V G + D G + SI L+ L+ ++ + +++ + G T+ PK P +
Sbjct: 72 SLTFEPGDVKCGDYSI-DIGTAGSISLVLQTLLPVLAVVNCGEVTLDITGGTDVPKAPPI 130
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R L GV G+++++ RG P GGG+V +T+ RL + + G +K
Sbjct: 131 DYVRFVLAHNLSLMGV---GIKVELIRRGHYPRGGGKVKVTVKPAGRLKPINITELGELK 187
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNR--LLPDVHI-FTDHRAGPQAGKSPGYGISLV 247
I G+S + R+ S AA ++ L P + + + + P G PG GI+L
Sbjct: 188 GIWGLSHAVRLPSHVAVRQAKAAEDYLSKLGLKPSISLEYYEQGKDPHLG--PGSGITLW 245
Query: 248 AETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDST 307
AE+T+G I D+ RG+ P ++VG + A L I G D
Sbjct: 246 AESTNGQRIGADSLGE--RGK-------------PAEDVGREAAEALAAVINAGAAFDDH 290
Query: 308 HQGLLFLLCALSE 320
+L AL+E
Sbjct: 291 MGDMLIPFLALAE 303
>sp|A3DN24|RTCA_STAMF RNA 3'-terminal phosphate cyclase OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rtcA PE=3 SV=2
Length = 357
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 147/324 (45%), Gaps = 30/324 (9%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L S + PV I +IRA + PGLRP ++ ++ L+ I D V
Sbjct: 14 GGQILRYSLGFSAVTLKPVRIYNIRAKRSNPGLRPQHLTAVKALQMITDAVVKGAKVGSM 73
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
E+ ++P G N + G + S ++ ++ LF+K S+ + G T+ P P +D
Sbjct: 74 EIYFEPKRRKPG-NYRFNIGTAGSTTLVIQAILPALLFSKGYSSVEIIGGTDVPWSPPID 132
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTI-PIVDRLMAVRWLDEGMVK 190
R + L+ FGV +E+++ RG P GGG V+L + P++ ++ + ++ G +
Sbjct: 133 YMRYVFIYNLRFFGVD---VEIELYRRGHYPRGGGRVVLKVKPLLGKMKPINIVERGKLI 189
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLL---PDVHIFTDHRAGPQAGKSPGYGISLV 247
I G+S + R+ +A + L P++ + + G PG GI L
Sbjct: 190 SIYGISHAVRLPRHVAERQARSAATVIREKLGVEPNI-LIESYPPGRDPHLGPGSGIVLY 248
Query: 248 AETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDST 307
A+ +G + D ARG+ EI VG + A L++E++ G DS
Sbjct: 249 ADVEAGTRLGGDAL--GARGKRAEI-------------VGREAAEKLIDELSSGMAFDS- 292
Query: 308 HQG-----LLFLLCALSEPDVSKV 326
H G +FL S VSK+
Sbjct: 293 HMGDMLIPYMFLAGGESIAGVSKL 316
>sp|A1RSJ7|RTCA_PYRIL RNA 3'-terminal phosphate cyclase OS=Pyrobaculum islandicum (strain
DSM 4184 / JCM 9189) GN=rtcA PE=3 SV=1
Length = 348
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 158/359 (44%), Gaps = 25/359 (6%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR + LS L PV I +IRA T PGL+P ++ + + D + + T
Sbjct: 13 GGQILRTSIALSALLGKPVEIINIRAKRTNPGLQPQHLTGVSAAALLTDADIEGAAKGST 72
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
L +KP + G + D G + SI ++ L + L+A P + + G T+ P +D
Sbjct: 73 RLYFKPKTLKCGTFNI-DIGTAGSISLVIQTLAPILLYAPCPTKLVITGGTDVAWAPPID 131
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
R + +L FG + +++ RG P GGG VI+ + + +L AV +++ G + +
Sbjct: 132 YMRYVFVKVLSLFGAK---IAIELVRRGHYPRGGGRVIVYVEPIKKLRAVHYVEFGRLVK 188
Query: 192 IRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETT 251
I G+S + + + AA+ +L + + R+ G PG GI L AE+
Sbjct: 189 ISGISHAVNLPTHVAERQAKAAKETLAKLGYVAEVEVETRSD---GLGPGSGIVLWAESD 245
Query: 252 SGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGL 311
G + D A GE + P + VG + A L + G +D +
Sbjct: 246 IGNVVGGD-----ALGERGK----------PAEEVGREAAERLAAVLKTGVSLDPHMADM 290
Query: 312 LFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDPSTGTVILRCVGCGY 370
+ AL+E SK+ + + + + + FL ++F + + + I+ G GY
Sbjct: 291 AVVYMALAEGR-SKMSTSEATLHLQTNMYIVEQFLPVKFKL--EKTGARYIIEVDGIGY 346
>sp|Q8TZC9|RTCA_METKA RNA 3'-terminal phosphate cyclase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rtcA PE=3
SV=1
Length = 352
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 136/315 (43%), Gaps = 27/315 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR + +S L PV I +IRA+ PGL + ++ + ICD + T
Sbjct: 14 GGQILRTAVGMSALTGEPVRIYNIRANRPRPGLSHQHLHAVKAVAEICDAECEGLEIGST 73
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
E+ ++PG V GG V D G + S+ L+ + L + A P+ + +RG T+ P VD
Sbjct: 74 EIVFEPGKVKGGEYEV-DIGTAGSVTLLLQAVKLAAIAADGPVEMEVRGGTDVKWSPPVD 132
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
+ L R G EL++ RG P GGG V + RL + + G ++
Sbjct: 133 YEINVNAHYLDRLGYR---YELEVLRRGHYPRGGGIVRARMEPPKRLKPLEAVKFGELES 189
Query: 192 IRGVSFSTRVSSQFENSMIHAARGIFNRLL---PDVHIFTDHRAGPQAGKSPGYGISLVA 248
+RG+S R+ AA I R L P++ I T + G PG GI L A
Sbjct: 190 VRGISHCVRLPPHVAERQAKAASEIIERELGIRPEIEIET-YPKGRDPHLGPGSGIVLWA 248
Query: 249 ETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTH 308
E G I D A GE + P + VG + A L++ + G +D H
Sbjct: 249 EDDQGNRIGAD-----ALGEKGK----------PAEVVGREAAEQLVQRLRTGMALDE-H 292
Query: 309 QG---LLFLLCALSE 320
G L FL A E
Sbjct: 293 MGDQILPFLAIADGE 307
>sp|Q60335|RTCA_METJA RNA 3'-terminal phosphate cyclase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rtcA PE=3 SV=1
Length = 338
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 13/244 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q +R + LS L PV I +IR GL P +S ++ ++++C+ V +N
Sbjct: 14 GGQIIRTAVSLSALTQKPVKIINIRKKRKNKGLAPQHVSAVKAVKKLCNAEVFGLNVGSE 73
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
EL + P + ++ D G + SI ++ L+ + L K +++++G T+ + P +D
Sbjct: 74 ELTFIPS-KLSPKDFTIDIGTAGSISLVIQTLLPLSLGINKKFTVKIKGGTDVKRAPPID 132
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
++ TL +L+ FGV +E LK+ RG P+GGGEVI + ++ ++
Sbjct: 133 YVKNVTLKILRNFGVLTE---LKVLKRGFYPEGGGEVIFEVK-PSKIKKFDLIEHSKSNL 188
Query: 192 IRGVSFSTRVSSQFENSMIHAARGIFN--RLLPDVHIFTDHRAGPQAGKSPGYGISLVAE 249
+ G+S+ + M A + N +LLP++ I G S G GI L +
Sbjct: 189 VEGISYVQNLDESIARRMRKKAVDLLNKEKLLPNIKIECSK------GISTGAGIVLWND 242
Query: 250 TTSG 253
T G
Sbjct: 243 TLGG 246
>sp|Q97W04|RTCA_SULSO RNA 3'-terminal phosphate cyclase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rtcA
PE=3 SV=2
Length = 337
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 157/342 (45%), Gaps = 30/342 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I +IRA+ PGL+ + +R ++ I + + +E G+
Sbjct: 12 GGQILRTSLTLSVITGKPFRIFNIRANRPNPGLQRQHLWAVRAMKMISN-AETKGDEVGS 70
Query: 72 -ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
EL + P + G + D G + S+ ++ +I K + I+++G T+ PK P++
Sbjct: 71 KELTFIPHEIKGNSIIDIDIGTAGSVTLIMQTMIPA--IINKNMRIKIKGGTDVPKSPTI 128
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R L +L++ G+ S ++ + RG P+GGGEVI+ + L+ G +
Sbjct: 129 DYIRLVYLEILRKIGIES---KVNLIKRGHYPEGGGEVIIE-NVNGNPSDFSLLELGKLI 184
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
I+G+S + + S +A+ I ++L + I TD R G S G GI+L A
Sbjct: 185 MIKGISHVSSLPSHIAERQKDSAKAILSKLGVQIEIETDVRQGEV---SKGSGIALAA-I 240
Query: 251 TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQG 310
I D+ RG+ EI VGE+ A L++ + VD
Sbjct: 241 GEKSIIGADSL--GERGKRAEI-------------VGEEAARKLIDNLNTKAAVDVHMSD 285
Query: 311 LLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI 352
+L + +L + + + +E++R FLD++ +I
Sbjct: 286 MLMIFTSLFGGEYIGAELTSHAYTNMEIIRK---FLDVKIEI 324
>sp|C6A4N4|RTCA_THESM RNA 3'-terminal phosphate cyclase OS=Thermococcus sibiricus (strain
MM 739 / DSM 12597) GN=rtcA PE=3 SV=1
Length = 350
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 145/321 (45%), Gaps = 27/321 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR + LS + P+ I +IRA + PGLRP + + L+ + D V E T
Sbjct: 12 GGQILRTAVALSVITGEPIKIINIRAKRSNPGLRPQHLHGILALKELSDAKVKGAKEGST 71
Query: 72 ELEYKPGI--VMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPS 129
ELE+ P V + L+ G SI L+ L+ +FA++ ++ + G T+ P
Sbjct: 72 ELEFYPKSTRVRHVKVLIKTAG---SISLVLQALLPAMVFAEEEVTFEITGGTDVAWSPP 128
Query: 130 VDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTI-PI-VDRLMAVRWLDEG 187
VD + TL L++ G+ +E++I RG P GGG VI + P R + R D+
Sbjct: 129 VDYLKHITLYALEKLGIK---VEIEIRRRGHYPRGGGFVIGKVYPWGTKRPLVARTFDK- 184
Query: 188 MVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLV 247
+ G+S + R+ S AA+ R+ P + I H + GK P +G
Sbjct: 185 -IYSFEGISHAVRLPSHVAIRQAKAAKEALERVYPSIPI-KIHEEYYEQGKDPHFG---- 238
Query: 248 AETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDS- 306
SG I +T V G+ E+ + P + VG + A L+E++ VD
Sbjct: 239 --PGSGIVIWANTDVLRLGGDA----LGERGK--PAEIVGREAAKALIEQLGPRHAVDKF 290
Query: 307 -THQGLLFLLCALSEPDVSKV 326
Q + FL A + VS+V
Sbjct: 291 LGDQLIPFLTFAGGDIWVSEV 311
>sp|A2BN21|RTCA_HYPBU RNA 3'-terminal phosphate cyclase OS=Hyperthermus butylicus (strain
DSM 5456 / JCM 9403) GN=rtcA PE=3 SV=1
Length = 359
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 149/349 (42%), Gaps = 34/349 (9%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L L+ L PV I +IRA PGL+ ++ ++ + + V + T
Sbjct: 12 GGQILRTTLALAALLGKPVRIVNIRAKRPRPGLQRQHLTSVKAVAELASARVEGLELGST 71
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
L + P + GR + G + SI L+ L+ V FA P+ + + G T+ P P +D
Sbjct: 72 TLVFIPRGLRSGR-FYFNIGTAGSITLVLQALLPVTAFAPGPVEVEIVGGTDVPWSPPID 130
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTI---PIVDRLMAVRWLDEGM 188
R LL FG E+ ++ RG P GGG V+L + P V L V+ + G
Sbjct: 131 YVRFVLRKLLAMFGFE---FEIIVKRRGHYPRGGGRVVLRVTQPPHV--LKPVKLEERGK 185
Query: 189 VKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRA-----GPQAGKSPGYG 243
V R+ G+S + R+ +A + LP V I D P G G
Sbjct: 186 VLRVEGLSHAVRLPRHVAERQARSAEAVLRSKLPGVPISIDLEWYEPSRDPHLGPGSGVV 245
Query: 244 ISLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGV 303
+ VAE + + D+ A+G+ P + VG + A LLE++A G
Sbjct: 246 VWAVAEHS---VLGSDSL--GAKGK-------------PAEAVGREAAEKLLEDLATGTA 287
Query: 304 VDSTHQGLLFLLCALS--EPDVSKVRVGKLSPYGIEMLRNIFDFLDIRF 350
+D +L AL+ E + R+ + IE+++ + ++ F
Sbjct: 288 LDRHASDMLIPYAALACGESILGGARLTMHAWTNIEVVKMLVPGAEMEF 336
>sp|Q4JB78|RTCA_SULAC RNA 3'-terminal phosphate cyclase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rtcA PE=3 SV=1
Length = 335
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 152/349 (43%), Gaps = 44/349 (12%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETG- 70
G Q LR L LS+L P I +IRA+ PGL+ ++ + + +I + V+ + G
Sbjct: 12 GGQILRTSLTLSSLTKKPFRIYNIRANRPKPGLQRQHLTAVNAV-KILTNATVKGDYVGS 70
Query: 71 TELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
TEL + PG + + V D G + S L+ ++ L + +++ ++G T+ PK PS+
Sbjct: 71 TELIFSPGDIQEKGDFVFDIGTAGSTTLILQTIL--PLLLNRKLTVTIKGGTDVPKSPSI 128
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRW------- 183
D R +L+R G+ +++ RG P+GGGE+ R+ VR
Sbjct: 129 DYIRLVFSKVLERIGIS---FNVELIKRGHYPEGGGEI--------RISNVRGEPQRFSI 177
Query: 184 LDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYG 243
+ G ++ G+S + + + +A I RL + I D R G
Sbjct: 178 TEFGQLEGFVGISHVSSLPVHIADRQKSSAEKILRRLKDKIDIRLDVREG---------- 227
Query: 244 ISLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGV 303
E + G I + Y D + KR + VGE+ A LLEE+
Sbjct: 228 -----EISKGSGICLSAIGKYGIIGADALGERGKR----AETVGEEAALKLLEELKTNAA 278
Query: 304 VDSTHQGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI 352
DS +L L +L + + + KL+ + I + I F+DI+ +I
Sbjct: 279 FDSHMGDMLMLYASLYQGEYT---ASKLTLHSITNEKVIRKFIDIKGEI 324
>sp|B1YDJ1|RTCA_PYRNV RNA 3'-terminal phosphate cyclase OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=rtcA PE=3 SV=1
Length = 347
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 153/362 (42%), Gaps = 31/362 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR + LS L PV I +IRA PGL+P ++ + + D V + T
Sbjct: 13 GGQILRTSIALSALLGKPVEIVNIRAKRANPGLQPQHLTGVSAAALLTDAEVEGAAKGST 72
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
L +KP + G + D G + SI ++ L + L+A P + + G T+ P +D
Sbjct: 73 RLFFKPKALKCGTFNI-DIGTAGSISLVVQTLAPILLYAPCPTKLVITGGTDVAWAPPID 131
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
R L RFG + +++ RG P GGG+ ++ RL AV ++ G +
Sbjct: 132 YMRFVFARYLTRFGAR---IAIELVKRGHYPRGGGKAVVQAEPAGRLRAVDSVEFGRPAK 188
Query: 192 IRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETT 251
I GVS + + AAR +L + + R G PG G+ L AE+
Sbjct: 189 IAGVSHAVNLPPHVAERQARAAREALAKLGYAAEVEVEAR---NDGLGPGSGVVLWAESD 245
Query: 252 SGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGL 311
G + D A GE + P + VG + A L + G +D +
Sbjct: 246 VGNVVGGD-----ALGERGK----------PAEEVGREAAEKLAAVLKAGASLDPHMADM 290
Query: 312 LFLLCALSEPDVSKVRVGKLSPYGIEMLRNIF---DFLDIRFDIMPDPSTGTVILRCVGC 368
+ L AL++ S++ + + + + NI+ FL ++F + + + I+ G
Sbjct: 291 VVLYMALAQ-GRSRLSTTEAT---MHLQTNIYIVEQFLPVKFKL--ERAGPRYIIEVEGV 344
Query: 369 GY 370
GY
Sbjct: 345 GY 346
>sp|O77264|RTCA_DROME RNA 3'-terminal phosphate cyclase OS=Drosophila melanogaster
GN=CG4061 PE=2 SV=1
Length = 361
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 155/364 (42%), Gaps = 25/364 (6%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q+LR L LS + PV + IRA PGL + L LL I + VV +
Sbjct: 17 GGQALRNALSLSCILGKPVRVVKIRASRPSPGLSHQHLHGLNLLRDITNADVVGNYLLSS 76
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
+E+ P ++ V + + SI + + V LFA +P + + G TN P V+
Sbjct: 77 TVEFTPRTILDNTYRV-ETHTAASITLIYQMALPVLLFAGRPSRLIVSGGTNVDFAPPVE 135
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
+ LP LK FGV +LK++ G P G G L + V +L + + + G +K
Sbjct: 136 YMQEVLLPNLKHFGV---SFDLKVQRYGFYPRGQGRCQLDVQPVTKLNSGKLVAFGRIKS 192
Query: 192 IRGVSF-STRVSSQFENSMIHAARGIFNRLLPDVHIFTDH-RAGPQAGKSPGYGISLVAE 249
+ GV++ + R+ M A+ +RL P + + Q G GI +
Sbjct: 193 VSGVAYCAGRLPVNIAIDMQQTAQREIHRLWPSQQCSIEPIKHSRQKAFHNGAGILMTVN 252
Query: 250 TTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGV-VDSTH 308
TTS + A + + +D +V ASC L + + V VD
Sbjct: 253 TTSDVVLG---ASALGKKRID-------------GHVLGSEASCQLGDYMRKQVCVDDYM 296
Query: 309 QGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDPSTGTVILRCVGC 368
Q L + AL+ S +R GKL+ + + ++FD+ +P G +++ C G
Sbjct: 297 QDQLIIYMALAVGR-STMRTGKLTNHTRTAINVAEQMTGVKFDVAMEPG-GQMLVSCKGL 354
Query: 369 GYKN 372
G+ N
Sbjct: 355 GHVN 358
>sp|Q8YVS3|RTCA_NOSS1 RNA 3'-terminal phosphate cyclase OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rtcA PE=3 SV=1
Length = 348
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 13/244 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L L+ + P+ I IRA PGL ++ +R RIC + T
Sbjct: 12 GGQVLRTSLSLAAITGEPIRIAGIRAGRRKPGLAAQHLTAVRAAARICHGELQGDALGST 71
Query: 72 ELEYKPGIVMGGRNLVHDC------GVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDP 125
LE+ PG + N + D G + +I L+ ++L A I LRG T+
Sbjct: 72 MLEFIPGGGVKAGNYIFDVSEVQQGGSAGAITLVLQTILLPLALADGDSHITLRGGTHVI 131
Query: 126 KDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLD 185
P+V LP+L R G+ ++ +K+ + G P GGGEV L + +L + L+
Sbjct: 132 FSPTVTYIERVYLPMLCRMGIKAQ---VKLGAWGWYPRGGGEVNLQVKGGCQLCGLNLLE 188
Query: 186 EGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGIS 245
G +KR++G++ +T + + M + A LL + +A + G +PG GI
Sbjct: 189 RGELKRVQGLAVATELPAHIPQRMANRA----ENLLRTAGLRVSMQALREKGVAPGAGIF 244
Query: 246 LVAE 249
L AE
Sbjct: 245 LTAE 248
>sp|Q3M6L1|RTCA_ANAVT RNA 3'-terminal phosphate cyclase OS=Anabaena variabilis (strain
ATCC 29413 / PCC 7937) GN=rtcA PE=3 SV=1
Length = 348
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 13/244 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L L+ + P+ I IRA PGL ++ +R RIC + T
Sbjct: 12 GGQVLRTSLSLAAITGEPIRIAGIRAGRRKPGLAAQHLTAVRAAARICHGELQGDALGST 71
Query: 72 ELEYKPGIVMGGRNLVHDC------GVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDP 125
LE+ PG + N + D G + +I L+ ++L A I LRG T+
Sbjct: 72 MLEFIPGGGVKAGNYIFDVSEVQQGGSAGAITLVLQTILLPLALADGDSHITLRGGTHVI 131
Query: 126 KDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLD 185
P+V LP+L R G+ ++ +K+ + G P GGGEV L + +L + L+
Sbjct: 132 FSPTVTYIERVYLPMLCRMGIKAQ---VKLGAWGWYPRGGGEVNLQVKGGCQLCGLNLLE 188
Query: 186 EGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGIS 245
G +KR++G++ +T + + M + A LL + +A + G +PG GI
Sbjct: 189 RGELKRVQGLAVATELPAHIPQRMANRA----ENLLRTAGLRVSMQALREKGVAPGAGIF 244
Query: 246 LVAE 249
L AE
Sbjct: 245 LTAE 248
>sp|Q974U1|RTCA_SULTO RNA 3'-terminal phosphate cyclase OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rtcA PE=3
SV=1
Length = 339
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 142/308 (46%), Gaps = 26/308 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS L P I IRA+ PGL+ ++ + ++++ + V T
Sbjct: 12 GGQILRTSLTLSALTKKPFRIYKIRANRPKPGLQRQHLTAVEAVKKLTNAKVKGDFVGST 71
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
EL ++P ++ + D G + S+ L+ ++ L + I + ++G T+ PK PS+D
Sbjct: 72 ELVFEPEDIVEKGDFEFDVGTAGSVTLILQTIL--PLLINRNIKVTIKGGTDVPKSPSID 129
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
R T L LL++ G+ + L + RG P+GGGE+ +T + + ++ G +
Sbjct: 130 YIRLTFLSLLEKIGIR---VNLILIRRGHYPEGGGEIKIT-EVKGNPSSFSLMERGELLM 185
Query: 192 IRGVSFSTRVSSQFENSMIHAARG-IFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
I+G+S + + S +A+ + +++ V I D R + +S G GI+L A
Sbjct: 186 IKGISHVSSLPSHIAERQAKSAKEFLLSKIKIPVEIEIDVR---ENERSKGSGIALTA-I 241
Query: 251 TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQG 310
F+ D+ +G+ EI VGE+ A + EEI VD
Sbjct: 242 FEKTFLGSDSLGE--KGKRAEI-------------VGEEAAKSIYEEIISNATVDRHMSD 286
Query: 311 LLFLLCAL 318
+L L +L
Sbjct: 287 MLMLYASL 294
>sp|B2IWJ8|RTCA_NOSP7 RNA 3'-terminal phosphate cyclase OS=Nostoc punctiforme (strain
ATCC 29133 / PCC 73102) GN=rtcA PE=3 SV=1
Length = 348
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 137/311 (44%), Gaps = 29/311 (9%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L L+ + P+ I IRA PGL ++ +R RIC+ +
Sbjct: 12 GGQVLRTSLSLAAITGEPIRIAGIRAGRKKPGLAAQHLTAVRAAGRICNAQLRGDALGSM 71
Query: 72 ELEYKPGIVMGGRNLVHDC------GVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDP 125
LE+ PG + D G + +I L+ ++L A + L+G T+
Sbjct: 72 LLEFIPGSAVQAGIYTFDVSKAQEGGSAGAIALVLQTILLPLALATGNSQVTLKGGTHVN 131
Query: 126 KDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLD 185
P+V LP+L+R GV ++ +K+ + G P GGGE+ L + +L + L+
Sbjct: 132 FSPTVTYIEQVYLPILQRMGVEAQ---VKLGAWGWFPQGGGEIELQVIGGTQLGGINLLE 188
Query: 186 EGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGIS 245
G ++++RG++ T + S M + A LL + H+ + + G +PG GI
Sbjct: 189 RGELQQVRGIAAVTELPSHIPQRMANRA----ENLLREAHLKVRVQTLREKGVAPGAGIF 244
Query: 246 LVAE-----TTSGCF----ISVDTAVSYARGEVDEIEY-----DEK--RELMPPDNVGEQ 289
L AE T G F +S +T A ++ E Y DE +L+ P + Q
Sbjct: 245 LTAEYQNSLTGFGGFGRLRLSAETVAEIACQQLLEFHYTGAAVDEHLADQLLLPATLASQ 304
Query: 290 IASCLLEEIAK 300
+ + E+++
Sbjct: 305 ESQYQVAEVSR 315
>sp|Q8U0N7|RTCA_PYRFU RNA 3'-terminal phosphate cyclase OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rtcA PE=3
SV=1
Length = 342
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 158/347 (45%), Gaps = 39/347 (11%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR + LS + PV I +IRA+ PGLRP ++ + L+++ + VE E G+
Sbjct: 12 GGQILRTSIALSAITGEPVKIINIRANRPNPGLRPQHLNAILALKKLA-NAKVEGAEVGS 70
Query: 72 -ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
E+ + PG + GG V D G + SI L+ L+ +FAK + ++ G T+ P V
Sbjct: 71 REVTFIPGELKGGEIRV-DIGTAGSITLVLQALLPAMVFAKDTVEFKITGGTDVSWSPPV 129
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTI-PIVDR--LMAVRWLDEG 187
D + T+ L++ G+ EG E+K+ RG P GGG V + P ++R L+A + +
Sbjct: 130 DYLINVTMFALRKIGI--EG-EIKLLRRGHYPKGGGIVAGYVKPWIERKELIAEEFEN-- 184
Query: 188 MVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTD--HRAGPQAGKSPGYGIS 245
+ ++ G+S +T + + AA L + I + H G PG GI
Sbjct: 185 -IYKVSGISHATNLPAHVAERQAKAAMEELKVLGVPIEIKKEVSHSLG------PGSGIV 237
Query: 246 LVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVD 305
+ AET C A+ ++ P + VG + A LL ++ VD
Sbjct: 238 VWAETE--CLRLGGDALG--------------KKGKPAEEVGREAAQELLSQVKTKACVD 281
Query: 306 STHQGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI 352
+ A+S K++V +++ + I + + F F++
Sbjct: 282 KFLGDQIIPFLAISG---GKIKVAEITKHLITNVWVVEQFFGKVFEV 325
>sp|B1L6E9|RTCA_KORCO RNA 3'-terminal phosphate cyclase OS=Korarchaeum cryptofilum
(strain OPF8) GN=rtcA PE=3 SV=1
Length = 348
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 158/358 (44%), Gaps = 39/358 (10%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETG- 70
G LR + LS++ PV I +IR PGLRP ++ +R L RI + VE +E G
Sbjct: 14 GGSLLRYAIALSSVTMKPVEIYNIRVKRANPGLRPQHLNAVRALARIT-EATVEGDEVGS 72
Query: 71 TELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
T L + P GG + D G + SI ++ ++ + +++ IS+R+RG T+ P P +
Sbjct: 73 TALRFIPRKRAGGSFEI-DIGTAGSISLIIQAILPACISSEEEISLRIRGGTDVPLAPPI 131
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILT------IPIVDRLMAVRWL 184
D L + GV + ELK+ RG P GGG V L PI D++ ++
Sbjct: 132 DYMAEVFLRNMAPLGVRA---ELKLLRRGHYPRGGGIVELHASPSKLFPI-DKVRGEKF- 186
Query: 185 DEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGI 244
+ ++ R V V + +S I R R+ + D GP AG
Sbjct: 187 -DRVLGRCHAVKLPRSVVERISSSAIDTLRKEGLRVEIEEEWSEDGHLGPGAG------- 238
Query: 245 SLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVV 304
+V T S I D E EK + P + VG+ AS LL+EI G
Sbjct: 239 -IVLWTDSNPRIGAD-------------ELGEKGK--PSEVVGKNAASKLLDEIKAGMAF 282
Query: 305 DSTHQGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDPSTGTVI 362
DS ++ AL+ S+V + KL+ + + + FL ++F + + TVI
Sbjct: 283 DSHMGDMIIPYLALAR-GRSRVGISKLTLHAESNIWLVERFLPVKFIVQGGVGSPTVI 339
>sp|Q9V0Z6|RTCA_PYRAB RNA 3'-terminal phosphate cyclase OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=rtcA PE=3 SV=1
Length = 342
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 152/346 (43%), Gaps = 37/346 (10%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR + LS + PV I +IRA+ PGLRP + + L+ + + V +
Sbjct: 12 GGQILRTSIALSAITGEPVRIINIRANRPNPGLRPQHLHGILALKHLANADVKGAHVGSR 71
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
EL + P + + + + G + SI L+ L+ FAK + ++ G T+ P P VD
Sbjct: 72 ELVFIPK-RLEAKKVEVNIGTAGSITLVLQALLPAMAFAKNRVEFKITGGTDVPWSPPVD 130
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTI-PIVDR--LMAVRWLDEGM 188
+ TL L++ G+ + +KI RG P GGG + + P +R L+A ++
Sbjct: 131 YLANVTLFALEKLGIMA---GIKIVRRGHYPKGGGIIEGYVEPWKERRELVATKY---SS 184
Query: 189 VKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKS--PGYGISL 246
+ ++ G+S +T + + AA+ ++L V I T+ KS PG GI +
Sbjct: 185 IAKVEGISHATNLPAHVAERQAKAAKEELSKLEVPVKIKTE------VSKSLGPGSGIVV 238
Query: 247 VAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDS 306
AET C A+ RG+ P + VG++ A LLE++ G VD
Sbjct: 239 WAETD--CLRLGGDALG-KRGK-------------PAEVVGKEAAQELLEQLKPGYCVDK 282
Query: 307 THQGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDI 352
L A S ++ V I ++ N FL FD+
Sbjct: 283 FLGDQLIPFLAFSGGEIWVSEVTNHLKTNIWVVEN---FLGKVFDL 325
>sp|B7KCF3|RTCA_CYAP7 RNA 3'-terminal phosphate cyclase OS=Cyanothece sp. (strain PCC
7424) GN=rtcA PE=3 SV=1
Length = 350
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 110/249 (44%), Gaps = 13/249 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P+ + IRA PGL ++ +R IC+ V T
Sbjct: 12 GGQILRTTLSLSAITGQPIRLYQIRAGRQKPGLSAQHLTCVRAAATICNAEVRGDKLRST 71
Query: 72 ELEYKPGIVMGGRNLVHDC------GVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDP 125
LE+ P + D G + ++ L+ ++L A + ++ L+G T+
Sbjct: 72 LLEFIPTRPPQAGHYTFDVMDAQEGGSAGAVTLILQTILLPLAIASEESTVILKGGTHVA 131
Query: 126 KDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLD 185
P + LPLL + G+ +E L +++ G P GGGEV L I +L V L+
Sbjct: 132 WSPPISYIEQVYLPLLSKLGLQTE---LHLQAWGWYPQGGGEVHLHIKGNCQLQGVELLE 188
Query: 186 EGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGIS 245
G +K+++G++ T + S M A R +LL H+ + G +PG G+
Sbjct: 189 RGALKQVKGLAVVTELPSHIPQRM--AMR--CEKLLQQAHVKGYVQPLRAKGVAPGAGVF 244
Query: 246 LVAETTSGC 254
L +E C
Sbjct: 245 LTSEYEHIC 253
>sp|A4YEC3|RTCA_METS5 RNA 3'-terminal phosphate cyclase OS=Metallosphaera sedula (strain
ATCC 51363 / DSM 5348) GN=rtcA PE=3 SV=1
Length = 334
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 146/321 (45%), Gaps = 31/321 (9%)
Query: 32 IDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCG 91
I IRA PGL+P ++ +R+++ + + V TELE++PG V+ G V D G
Sbjct: 32 IRGIRAKRKNPGLQPQHLTSVRVMKMLTNARVSGDYLGSTELEFEPGEVVEGSFTV-DVG 90
Query: 92 VSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGL 151
+ S+ L + + L + IS+R+RG T+ P P VD R +PLL++ G+
Sbjct: 91 TAGSVS--LIAMTAIPLMINRRISLRIRGGTDVPLSPPVDYMRLVFIPLLEKMGITG--- 145
Query: 152 ELKIESRGSPPDGGGEV-ILTIPIVDRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMI 210
+++++ RG P+GGGEV + R + + E ++ I GVS T + + I
Sbjct: 146 KIEVKRRGHYPEGGGEVEVYGFRGEPRDLVLDSFGE--LREITGVSHVTSLPAHIAKRQI 203
Query: 211 HAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETTSGCFISVDTAVSYARGEVD 270
+ +V + + + S G GI L A +S+ A S
Sbjct: 204 QGVMEVLREF--NVPVKVEEEVSNEG--SRGTGIVLSAHG-----LSIMGASSLG----- 249
Query: 271 EIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVSKVRVGK 330
+ + +NVG + + LL+E+ G VDS +L A + + + + +
Sbjct: 250 -------EKGITAENVGRKAGTELLKELKTGAAVDSHMGDMLVTFSAFANLEYTGSLLTQ 302
Query: 331 LSPYGIEMLRNIFDFLDIRFD 351
+ IE++R + +D++ +
Sbjct: 303 HTETNIEVIRKFLE-IDVKIE 322
>sp|O59198|RTCA_PYRHO RNA 3'-terminal phosphate cyclase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rtcA PE=3 SV=2
Length = 341
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 130/294 (44%), Gaps = 24/294 (8%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR + LST+ PV I +IRA+ PGLRP + + L+ + + V +
Sbjct: 12 GGQILRTSVALSTITGEPVRIVNIRANRPNPGLRPQHLHAILALKHLANAEVKGAHVGSR 71
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
EL + P + + + D G + SI L+ L+ +FA++ + R+ G T+ P VD
Sbjct: 72 ELVFIPK-KLEAKEISIDIGTAGSITLVLQALLPAMVFAREKVKFRITGGTDVSWSPPVD 130
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKR 191
+ TL L++ G+ E+++ RG P GGG V + + + + + +
Sbjct: 131 YLSNVTLFALEKIGIHG---EIRVIRRGHYPKGGGIVEGYVEPWNEKRELVAKEYSRIIK 187
Query: 192 IRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETT 251
I G+S +T + S AA+ +L + I T+ PG GI + AET
Sbjct: 188 IEGISHATNLPSHVAERQARAAKDELLQLKVPIEIRTE----ISRSIGPGSGIVVWAETD 243
Query: 252 SGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVD 305
C A+ ++ P + VG++ A LL+++ G VD
Sbjct: 244 --CLRLGGDALG--------------KKGKPAEIVGKEAAQELLDQLKPGHCVD 281
>sp|B7M2I0|RTCA_ECO8A RNA 3'-terminal phosphate cyclase OS=Escherichia coli O8 (strain
IAI1) GN=rtcA PE=3 SV=1
Length = 338
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 123/295 (41%), Gaps = 17/295 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I IRA PGL ++ ++ IC VE E G+
Sbjct: 15 GGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAAAEICR-ATVEGAELGS 73
Query: 72 E-LEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
+ L ++PG V GG G + S L+ ++ FA P + + G T++P P
Sbjct: 74 QRLVFRPGTVRGG-EYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPA 132
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R PLL + G+ + L+ G P GGG V + V ++ + G +
Sbjct: 133 DFIRRVLEPLLAKIGIHQQTTLLR---HGFYPAGGGVVATEVSPVASFNTLQLGERGNIV 189
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
++RG VS I G F+ ++H + PG +SL E+
Sbjct: 190 QMRGEVLLAGVSRHVAEREIATLAGSFSLHEQNIHNLPRD-------QGPGNTVSLEVES 242
Query: 251 ---TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGG 302
T F+ + VS A ++ + KR L P VGE +A L+ +A G
Sbjct: 243 ENITERFFVVGEKRVS-AEVVAAQLVKEVKRYLASPAAVGEYLADQLVLPMALAG 296
>sp|Q8PXC4|RTCA_METMA RNA 3'-terminal phosphate cyclase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rtcA PE=3 SV=1
Length = 352
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 147/363 (40%), Gaps = 56/363 (15%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q +R + LS + + + +IR + PGL+ + L +IC V +++ +
Sbjct: 12 GGQLVRTAVALSAVTGEEIKVTNIRENRPNPGLKQQHLKALETAAKICGARVSGLSQGSS 71
Query: 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVD 131
EL + P + GG+ + D G + SI L+ ++ F ++ + + +RG T+ P++D
Sbjct: 72 ELFFAPVEIKGGKYNI-DIGTAGSITLLLQCIMPALPFVEEKVELTIRGGTDVAWSPTID 130
Query: 132 TFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTI------------------- 172
+ TL L++FG + ++ RG P GGG V
Sbjct: 131 YLKHVTLRALEQFGYAG---SVTLKERGYYPRGGGSVSAVFEPCKLHGFHFRKTEGNKKT 187
Query: 173 ---PIVDRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTD 229
P+ + L ++ M++ I GVS ++ + + +AR +F D I
Sbjct: 188 ESNPVGEGLKG----EKSMMEEIIGVSHASNLPAHVPARQAESARSLFLEAGYDARI--- 240
Query: 230 HRAGPQAGKSPGYGISLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQ 289
+ +S F S + ++ +G +K +P + VG Q
Sbjct: 241 -------------------DVSSSEFFSTGSGITLWKGYCGGSALGKKG--LPAEKVGRQ 279
Query: 290 IASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIR 349
A +++E+ G VD L AL+ VR +L+ + + FLD++
Sbjct: 280 AAEEVIKELRAGAAVDIHLADQLIPYMALAGNSSFTVR--ELTLHAATNIWVTEQFLDVK 337
Query: 350 FDI 352
F I
Sbjct: 338 FKI 340
>sp|Q1R5L5|RTCA_ECOUT RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain UTI89
/ UPEC) GN=rtcA PE=3 SV=2
Length = 338
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 126/300 (42%), Gaps = 17/300 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I IRA PGL ++ ++ IC VE E G+
Sbjct: 15 GGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR-ATVEGAELGS 73
Query: 72 E-LEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
+ L ++PG V GG + G + S L+ ++ FA P + + G T++P P
Sbjct: 74 QRLVFRPGTVRGG-DYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPA 132
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R PLL + GV + L+ G P GGG V + V +++ + G +
Sbjct: 133 DFIRRVLEPLLAKIGVHQQTTLLR---HGFYPAGGGVVATEVSPVASFNSLQLGERGNIV 189
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
++RG V I G F+ ++H + PG +SL E+
Sbjct: 190 QMRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRD-------QGPGNTVSLEVES 242
Query: 251 ---TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDST 307
T F+ + VS A ++ + KR L P VGE +A L+ +A G + T
Sbjct: 243 ENITERFFVVGEKRVS-AEVVAAQLVKEVKRYLASPAAVGEYLADQLVLPMALAGTGEFT 301
>sp|A1AGU3|RTCA_ECOK1 RNA 3'-terminal phosphate cyclase OS=Escherichia coli O1:K1 / APEC
GN=rtcA PE=3 SV=2
Length = 338
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 126/300 (42%), Gaps = 17/300 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I IRA PGL ++ ++ IC VE E G+
Sbjct: 15 GGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR-ATVEGAELGS 73
Query: 72 E-LEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
+ L ++PG V GG + G + S L+ ++ FA P + + G T++P P
Sbjct: 74 QRLVFRPGTVRGG-DYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPA 132
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R PLL + GV + L+ G P GGG V + V +++ + G +
Sbjct: 133 DFIRRVLEPLLAKIGVHQQTTLLR---HGFYPAGGGVVATEVSPVASFNSLQLGERGNIV 189
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
++RG V I G F+ ++H + PG +SL E+
Sbjct: 190 QMRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRD-------QGPGNTVSLEVES 242
Query: 251 ---TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDST 307
T F+ + VS A ++ + KR L P VGE +A L+ +A G + T
Sbjct: 243 ENITERFFVVGEKRVS-AEVVAAQLVKEVKRYLASPAAVGEYLADQLVLPMALAGTGEFT 301
>sp|B7MDP5|RTCA_ECO45 RNA 3'-terminal phosphate cyclase OS=Escherichia coli O45:K1
(strain S88 / ExPEC) GN=rtcA PE=3 SV=1
Length = 338
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 126/300 (42%), Gaps = 17/300 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I IRA PGL ++ ++ IC VE E G+
Sbjct: 15 GGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR-ATVEGAELGS 73
Query: 72 E-LEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
+ L ++PG V GG + G + S L+ ++ FA P + + G T++P P
Sbjct: 74 QRLVFRPGTVRGG-DYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPA 132
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R PLL + GV + L+ G P GGG V + V +++ + G +
Sbjct: 133 DFIRRVLEPLLAKIGVHQQTTLLR---HGFYPAGGGVVATEVSPVASFNSLQLGERGNIV 189
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
++RG V I G F+ ++H + PG +SL E+
Sbjct: 190 QMRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRD-------QGPGNTVSLEVES 242
Query: 251 ---TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDST 307
T F+ + VS A ++ + KR L P VGE +A L+ +A G + T
Sbjct: 243 ENITERFFVVGEKRVS-AEVVAAQLVKEVKRYLASPAAVGEYLADQLVLPMALAGTGEFT 301
>sp|B7N1J7|RTCA_ECO81 RNA 3'-terminal phosphate cyclase OS=Escherichia coli O81 (strain
ED1a) GN=rtcA PE=3 SV=1
Length = 338
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 126/300 (42%), Gaps = 17/300 (5%)
Query: 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT 71
G Q LR L LS + P I IRA PGL ++ ++ IC VE E G+
Sbjct: 15 GGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR-ATVEGAELGS 73
Query: 72 E-LEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130
+ L ++PG V GG + G + S L+ ++ FA P + + G T++P P
Sbjct: 74 QRLVFRPGTVRGG-DYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPA 132
Query: 131 DTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILTIPIVDRLMAVRWLDEGMVK 190
D R PLL + GV + L+ G P GGG V + V +++ + G +
Sbjct: 133 DFIRRVLEPLLAKIGVHQQTTLLR---HGFYPAGGGVVATEVSPVASFNSLQLGERGNIV 189
Query: 191 RIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250
++RG V I G F+ ++H + PG +SL E+
Sbjct: 190 QMRGEVLLAGVPRHVAEREIATLAGSFSLHEQNIHNLPRD-------QGPGNTVSLEVES 242
Query: 251 ---TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDST 307
T F+ + VS A ++ + KR L P VGE +A L+ +A G + T
Sbjct: 243 ENITERFFVVGEKRVS-AEVVAAQLVKEVKRYLASPAAVGEYLADQLVLPMALAGAGEFT 301
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.141 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,036,406
Number of Sequences: 539616
Number of extensions: 6514869
Number of successful extensions: 13871
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 13620
Number of HSP's gapped (non-prelim): 119
length of query: 378
length of database: 191,569,459
effective HSP length: 119
effective length of query: 259
effective length of database: 127,355,155
effective search space: 32984985145
effective search space used: 32984985145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)