Query 017072
Match_columns 378
No_of_seqs 130 out of 558
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03400 18S_RNA_Rcl1p 18S rR 100.0 2E-107 5E-112 807.6 45.5 357 8-378 1-360 (360)
2 KOG3980 RNA 3'-terminal phosph 100.0 1E-103 2E-108 750.1 40.6 356 5-377 4-360 (361)
3 TIGR03399 RNA_3prim_cycl RNA 3 100.0 2E-101 5E-106 754.9 40.7 320 8-351 1-326 (326)
4 PRK04204 RNA 3'-terminal-phosp 100.0 3E-100 7E-105 750.5 43.7 326 6-356 1-334 (343)
5 cd00874 RNA_Cyclase_Class_II R 100.0 2.1E-99 4E-104 741.1 41.9 316 12-353 9-325 (326)
6 cd00875 RNA_Cyclase_Class_I RN 100.0 2.9E-99 6E-104 744.7 41.9 337 5-354 2-341 (341)
7 COG0430 RCL1 RNA 3'-terminal p 100.0 4.6E-98 1E-102 717.5 35.8 325 6-355 1-331 (341)
8 cd00295 RNA_Cyclase RNA 3' pho 100.0 2.7E-95 6E-100 715.8 39.0 325 10-354 7-338 (338)
9 PF01137 RTC: RNA 3'-terminal 100.0 1.3E-76 2.8E-81 553.9 20.6 222 10-354 7-228 (228)
10 cd01553 EPT_RTPC-like This dom 100.0 5.5E-32 1.2E-36 251.1 19.1 167 12-182 9-175 (211)
11 PF05189 RTC_insert: RNA 3'-te 99.9 2.4E-23 5.3E-28 172.3 12.4 103 184-301 1-103 (103)
12 PRK12830 UDP-N-acetylglucosami 92.8 2 4.4E-05 43.5 13.3 107 18-147 97-204 (417)
13 PRK02427 3-phosphoshikimate 1- 92.5 3.7 8.1E-05 41.8 14.7 117 8-153 17-139 (435)
14 PLN02338 3-phosphoshikimate 1- 92.4 6.1 0.00013 40.5 16.3 122 8-147 16-145 (443)
15 PRK11860 bifunctional 3-phosph 90.5 7.4 0.00016 42.4 15.1 118 8-147 19-139 (661)
16 cd01556 EPSP_synthase EPSP syn 89.2 7 0.00015 39.2 13.0 121 8-153 5-128 (409)
17 cd01556 EPSP_synthase EPSP syn 88.2 11 0.00024 37.7 13.6 118 7-147 147-268 (409)
18 PRK09369 UDP-N-acetylglucosami 87.9 9 0.0002 38.9 12.9 107 18-147 98-206 (417)
19 PRK11861 bifunctional prephena 86.5 19 0.00041 39.4 15.0 120 9-153 256-378 (673)
20 PRK02427 3-phosphoshikimate 1- 86.4 19 0.00041 36.6 14.3 116 14-147 94-211 (435)
21 COG0128 AroA 5-enolpyruvylshik 85.7 23 0.00049 36.7 14.2 144 6-185 159-307 (428)
22 PRK14806 bifunctional cyclohex 84.5 26 0.00055 38.5 15.0 120 8-152 316-440 (735)
23 TIGR01356 aroA 3-phosphoshikim 83.8 16 0.00034 36.9 12.2 114 13-147 78-196 (409)
24 PRK14806 bifunctional cyclohex 83.6 9.5 0.00021 41.8 11.2 112 13-147 395-508 (735)
25 PLN02338 3-phosphoshikimate 1- 83.4 22 0.00048 36.5 13.2 124 7-153 169-298 (443)
26 TIGR01356 aroA 3-phosphoshikim 83.3 24 0.00051 35.6 13.2 118 8-147 3-121 (409)
27 cd01554 EPT-like Enol pyruvate 82.6 27 0.00058 35.1 13.3 122 7-153 4-129 (408)
28 cd01554 EPT-like Enol pyruvate 81.9 32 0.00069 34.6 13.5 108 20-147 233-342 (408)
29 cd01555 UdpNAET UDP-N-acetylgl 80.3 32 0.00069 34.5 12.8 80 51-147 116-195 (400)
30 TIGR01072 murA UDP-N-acetylglu 78.8 15 0.00033 37.0 10.1 80 51-147 126-205 (416)
31 COG0128 AroA 5-enolpyruvylshik 71.8 1.2E+02 0.0026 31.5 14.2 144 13-189 94-240 (428)
32 PF00275 EPSP_synthase: EPSP s 70.8 49 0.0011 33.7 11.4 116 14-153 93-210 (419)
33 PRK09369 UDP-N-acetylglucosami 69.3 1.1E+02 0.0025 30.8 13.7 113 8-147 158-274 (417)
34 PRK11860 bifunctional 3-phosph 67.5 81 0.0017 34.4 12.8 117 13-147 97-217 (661)
35 PF00275 EPSP_synthase: EPSP s 62.0 63 0.0014 32.9 10.2 121 8-147 11-135 (419)
36 PRK11861 bifunctional prephena 55.0 98 0.0021 33.9 10.7 118 13-147 332-455 (673)
37 cd01555 UdpNAET UDP-N-acetylgl 54.7 1.3E+02 0.0029 30.0 11.0 119 8-147 5-126 (400)
38 TIGR01072 murA UDP-N-acetylglu 52.4 41 0.00089 33.9 6.9 61 72-147 3-63 (416)
39 PRK12830 UDP-N-acetylglucosami 48.1 51 0.0011 33.3 6.8 61 72-147 3-63 (417)
40 COG0766 MurA UDP-N-acetylgluco 37.3 3.4E+02 0.0073 28.1 10.4 110 18-153 239-349 (421)
41 KOG0692 Pentafunctional AROM p 33.9 57 0.0012 34.4 4.4 70 89-166 263-333 (595)
42 PLN00218 predicted protein; Pr 25.4 53 0.0011 27.4 2.1 22 91-112 57-78 (151)
No 1
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=100.00 E-value=2.1e-107 Score=807.63 Aligned_cols=357 Identities=55% Similarity=0.927 Sum_probs=341.2
Q ss_pred EEEeChHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEE
Q 017072 8 KRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLV 87 (378)
Q Consensus 8 i~~dG~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~ 87 (378)
++|.|+|+||+||+||+||||||+|+|||++|+||||++||+++|++++++|+|++++++++||+|+|.||.+++|+ |+
T Consensus 1 ~~f~~~QilR~alaLS~itgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~gG~-~~ 79 (360)
T TIGR03400 1 LRFEGSRNFRQRLVLSTLSGKPVRITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPGLITGGS-VT 79 (360)
T ss_pred CeeechHHHHHHHHHHHhcCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcccCCe-EE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCCCCCCcE
Q 017072 88 HDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGE 167 (378)
Q Consensus 88 ~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~P~GgGe 167 (378)
|||+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++||++++.+++++.||||||+||||
T Consensus 80 ~d~gtagSitl~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l~l~~RG~yP~GgGe 159 (360)
T TIGR03400 80 HECPTTRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLELKILKRGAAPLGGGE 159 (360)
T ss_pred EeCCCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeccccCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999444599999999999999999
Q ss_pred EEEEEecCCCccceEeeecCceeEEEEEEEecccchhHHHHHHHHHHHHhhhcCCceeEEeeccCCCCCCCCCceEEEEE
Q 017072 168 VILTIPIVDRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLV 247 (378)
Q Consensus 168 V~~~~~p~~~l~~i~l~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~~L~~~~~~v~I~~d~~~~~~~~~~~G~~i~L~ 247 (378)
|+++++|+++++|++|+++|++++|||+++++++|+++++||+++|++.|++.++|++|++|..++++++.+||++++||
T Consensus 160 V~~~~~p~~~l~~i~l~~~G~v~~irg~~~~~~l~~~v~~r~~~~a~~~L~~~~~~~~i~~~~~~~~~~~~~~G~~i~L~ 239 (360)
T TIGR03400 160 VELRCPVIKQLKTIHLTERGKVKRIRGVAYSTRVSPSLANRMIDAARGVLNNLLPDVYITTDVRKGKNSGKSPGYGLSLV 239 (360)
T ss_pred EEEEEcCccCccceEEEcCCCcEEEEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCcEEEEEecccccCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999777777889999999999
Q ss_pred EEecCceEEeEecccccCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcCCCCCcCChhHHHHHHhhcCCCcceEE
Q 017072 248 AETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVSKVR 327 (378)
Q Consensus 248 aet~~g~~~~~d~~~~~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~~~~S~i~ 327 (378)
||+++||++|+|++++++ .+++||+||++||++|++||+.|||||+||||||++|||||.+++|+++
T Consensus 240 ae~~~g~~~g~~~lg~~~-------------~g~~aE~vg~~aa~~L~~~i~~gg~vD~~lqdqll~~mALa~~~~S~i~ 306 (360)
T TIGR03400 240 AETTNGCIISAEAVSSPG-------------EGSLPEDLGKRAAYLLLEEIYRGGCVDSTHQPLALLLMALGQEDVSKLR 306 (360)
T ss_pred EEeCCCEEEEEEeecCCC-------------CCCCHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHhCCCCcceEE
Confidence 999999999999999882 1289999999999999999999999999999999999999966789999
Q ss_pred ecCCCHHHHHHHHHHHhhcCcEEEEeeCC---CCCeEEEEEEeeeccccccccC
Q 017072 328 VGKLSPYGIEMLRNIFDFLDIRFDIMPDP---STGTVILRCVGCGYKNLSRKLS 378 (378)
Q Consensus 328 ~g~lT~h~~t~l~v~~~f~~v~f~i~~~~---~~~~~~i~c~G~G~~n~~~~~~ 378 (378)
++++|+|++|++|++++|+|++|++++++ +.++++++|.|+||+|++||+.
T Consensus 307 ~~~lt~h~~t~l~vi~~f~~v~f~i~~~~~~~~~~~~~i~~~G~G~~n~~~~~~ 360 (360)
T TIGR03400 307 LGKLSEYTVEFLRDLKEFFGVTFKIKDDDSENGSGKVLLSCVGIGYTNVSKKIA 360 (360)
T ss_pred ecCCCHHHHHHHHHHHHhcCCEEEEEEcccCCCCceEEEEEEeeeeeccccccC
Confidence 99999999999999999999999998642 2367899999999999999974
No 2
>KOG3980 consensus RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=100.00 E-value=1.1e-103 Score=750.09 Aligned_cols=356 Identities=45% Similarity=0.801 Sum_probs=344.7
Q ss_pred cceEEEeChHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCc
Q 017072 5 TSYKRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGR 84 (378)
Q Consensus 5 ~~~i~~dG~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~ 84 (378)
..-+.+.|+|+||.+|+||+|+|+||+|.+||++|++|||++||+++|+|++++|||++++++++||++.|.||.|.||.
T Consensus 4 ~~~~~f~g~q~lr~~lvls~Lsg~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~Pg~i~GG~ 83 (361)
T KOG3980|consen 4 DGSYLFGGGQALRLRLVLSTLSGKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTPGLILGGT 83 (361)
T ss_pred CceEEecchHHHHHHHHHHHhcCCceEEEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcCceeeCCc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCCCCC
Q 017072 85 NLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDG 164 (378)
Q Consensus 85 ~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~P~G 164 (378)
++|||+|+++|+||+|++||++||++.|++|+|+|+||++++|++||++.+++|+|+|||++ ++ |+++.||||||+|
T Consensus 84 -~~~dc~t~~~I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~-~~-elki~kRG~~P~G 160 (361)
T KOG3980|consen 84 -VTHDCPTARSIGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVN-DE-ELKIQKRGFAPEG 160 (361)
T ss_pred -eEEeccCccceeeehhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcC-cc-eEEEEecccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998 22 7999999999999
Q ss_pred CcEEEEEEecCCCccceEeeecCceeEEEEEEEecccchhHHHHHHHHHHHHhhhcCCceeEEeeccCCCCCCCCCceEE
Q 017072 165 GGEVILTIPIVDRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGI 244 (378)
Q Consensus 165 gGeV~~~~~p~~~l~~i~l~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~~L~~~~~~v~I~~d~~~~~~~~~~~G~~i 244 (378)
||||.|+|+|+++|+||.|+++|+|+||||++|+++++|++|+||+++|++.|+++.||++|++|++++.++++|||+||
T Consensus 161 gGeV~f~~~~~k~l~pI~l~~~g~I~kIrG~ays~rVsP~~A~rm~d~Ak~~l~~~i~dv~i~~d~~~g~~sg~spG~gi 240 (361)
T KOG3980|consen 161 GGEVVFTVPVVKKLNPIKLTEPGKIKKIRGVAYSTRVSPSLANRMVDAAKRVLHKFIPDVYIYTDVRKGVDSGFSPGFGI 240 (361)
T ss_pred CcEEEEEcCcccccCceeeccCccEEEEEeEEEEcccChHHHHHHHHHHHHHHhhhCCceEEEEeeecccccCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCceEEeEecccccCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcCCCCCcCChhHHHHHHhhcCCCcc
Q 017072 245 SLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVS 324 (378)
Q Consensus 245 ~L~aet~~g~~~~~d~~~~~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~~~~S 324 (378)
+|+|||++||+|+++++++++. ..||++|.+||++||++|+.|||||+|+|||+++||||+..++|
T Consensus 241 ~lvAETt~g~~y~Ae~~g~~~~--------------~~pe~lG~eaa~~LL~~i~~gg~vD~~~q~lai~~MaL~~~~vs 306 (361)
T KOG3980|consen 241 TLVAETTSGVIYAAEALGKPGP--------------VTPEDLGSEAACQLLEEIYKGGCVDSYLQDLAIVYMALGSEDVS 306 (361)
T ss_pred EEEEEecCCEEEEhhhcCCCCC--------------CCHHHHHHHHHHHHHHHHHhCCccCchhhHHHHHHHhhhhcCcc
Confidence 9999999999999999998852 89999999999999999999999999999999999999998899
Q ss_pred eEEecCCCHHHHHHHHHHHhhcCcEEEEeeCCCC-CeEEEEEEeeecccccccc
Q 017072 325 KVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDPST-GTVILRCVGCGYKNLSRKL 377 (378)
Q Consensus 325 ~i~~g~lT~h~~t~l~v~~~f~~v~f~i~~~~~~-~~~~i~c~G~G~~n~~~~~ 377 (378)
++++|++|.|++++|+++||||+++|+++..+++ .+++++|+|+||+|.+|++
T Consensus 307 ~~~~G~l~~~t~~~L~~lk~~f~~ef~v~~~~~g~~~~lv~c~GiG~tN~nk~i 360 (361)
T KOG3980|consen 307 RLLTGPLTNYTVTALRHLKQFFGIEFKVKMEEEGGGKVLVTCVGIGYTNVNKTI 360 (361)
T ss_pred eEEecCCChhhHHHHHHHHHHhCEEEEEecCCCCCceEEEEeeccccccccccc
Confidence 9999999999999999999999999999976433 4799999999999999986
No 3
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=100.00 E-value=2.3e-101 Score=754.88 Aligned_cols=320 Identities=33% Similarity=0.498 Sum_probs=310.9
Q ss_pred EEEeCh------HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCccc
Q 017072 8 KRLKGS------QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVM 81 (378)
Q Consensus 8 i~~dG~------q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~ 81 (378)
|+|||+ |+||+|++||+||||||+|+|||+||+||||++||+++|++++++|||++.+++++||+|+|.||.++
T Consensus 1 i~iDGs~~eGGGQilR~alaLS~ltgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~ 80 (326)
T TIGR03399 1 IEIDGSYGEGGGQILRTALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFIPGKIR 80 (326)
T ss_pred CEecCCCccCcHHHHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCcc
Confidence 467865 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCC
Q 017072 82 GGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSP 161 (378)
Q Consensus 82 ~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~ 161 (378)
+|+ |+|||+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++||++ +++++.|||||
T Consensus 81 gG~-~~~d~gtagSi~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~---~~l~v~rRG~y 156 (326)
T TIGR03399 81 GGD-YRFDIGTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIR---AELELLRRGFY 156 (326)
T ss_pred CCe-EEEeCCCChhhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCc---EEEEEEeCCcC
Confidence 999 99999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred CCCCcEEEEEEecCCCccceEeeecCceeEEEEEEEecccchhHHHHHHHHHHHHhhhcCCceeEEeeccCCCCCCCCCc
Q 017072 162 PDGGGEVILTIPIVDRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPG 241 (378)
Q Consensus 162 P~GgGeV~~~~~p~~~l~~i~l~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~~L~~~~~~v~I~~d~~~~~~~~~~~G 241 (378)
|+|||||.++++|+++++|++++++|++++|||+++++++|+++++||+++|++.|++.+|+++|++|.. +.+.+||
T Consensus 157 P~GGGeV~~~i~p~~~l~~i~l~~~G~i~~i~g~~~~~~l~~~va~r~~~~a~~~L~~~~~~~~i~~~~~---~~~~s~G 233 (326)
T TIGR03399 157 PRGGGEVRLRVEPVKKLKPLELEERGELLRVSGIAHAANLPAHVAERMAKAAREELRKLGLDPEIEIEVL---DKGLGPG 233 (326)
T ss_pred CCCCEEEEEEEccccCCCceeeecCCceEEEEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEec---cCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988875 3568999
Q ss_pred eEEEEEEEecCceEEeEecccccCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcCCCCCcCChhHHHHHHhhcCC
Q 017072 242 YGISLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEP 321 (378)
Q Consensus 242 ~~i~L~aet~~g~~~~~d~~~~~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~~ 321 (378)
++++|||||+ ||++++|++++++ ++||+||++||++|++|+++|||||+||||||++|||||++
T Consensus 234 ~~i~L~aet~-g~~~~~~~lg~~g---------------~~aE~vg~~aa~~L~~~i~~g~~vD~~lqdqlll~mALa~g 297 (326)
T TIGR03399 234 SGIVLWAETE-HCRLGFSALGEKG---------------KSAEKVGEEAAEQLLAELRSGAAVDEHLADQLILYMALASG 297 (326)
T ss_pred EEEEEEEEEC-CeEEEEEecCCCC---------------CCHHHHHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCC
Confidence 9999999998 9999999999887 89999999999999999999999999999999999999987
Q ss_pred CcceEEecCCCHHHHHHHHHHHhhcCcEEE
Q 017072 322 DVSKVRVGKLSPYGIEMLRNIFDFLDIRFD 351 (378)
Q Consensus 322 ~~S~i~~g~lT~h~~t~l~v~~~f~~v~f~ 351 (378)
+|+|+++++|+|++|++|++++||+++|+
T Consensus 298 -~S~i~~~~lT~h~~t~l~v~~~f~~v~f~ 326 (326)
T TIGR03399 298 -ESRFTTSELTMHLRTNIWVIEQFLPVRFE 326 (326)
T ss_pred -CceEEecCCCHHHHHHHHHHHHHhCCeeC
Confidence 79999999999999999999999999985
No 4
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=100.00 E-value=3e-100 Score=750.45 Aligned_cols=326 Identities=30% Similarity=0.456 Sum_probs=314.8
Q ss_pred ceEEEeCh------HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCc
Q 017072 6 SYKRLKGS------QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGI 79 (378)
Q Consensus 6 ~~i~~dG~------q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~ 79 (378)
+||++||+ |+||+|++||+||||||+|+|||+||++|||++||+++|++++++|||++.+++.+||+|+|.||.
T Consensus 1 ~mi~idGs~~eGGgQilR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~i~~~~v~g~~~gst~l~f~Pg~ 80 (343)
T PRK04204 1 RMIEIDGSYGEGGGQILRTALALSAITGKPFRITNIRANRPNPGLLRQHLTAVKAAAEICNAEVEGAELGSQELVFIPGP 80 (343)
T ss_pred CeEEEeCCcccccHHHHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEEeeecCceEEEEECCC
Confidence 49999986 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeC
Q 017072 80 VMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRG 159 (378)
Q Consensus 80 i~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG 159 (378)
+.+|+ |+|||+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++||++ +++++.|||
T Consensus 81 i~~g~-~~~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~---~~l~i~rRG 156 (343)
T PRK04204 81 IRGGD-YRFDIGTAGSITLVLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIE---AEIELLRRG 156 (343)
T ss_pred ccCCe-EEEecCCCcchhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCc---EEEEEEeCC
Confidence 99999 99999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCCCCcEEEEEEecCCCccceEeeecCceeEEEEEEEecccchhHHHHHHHHHHH--HhhhcCCceeEEeeccCCCCCC
Q 017072 160 SPPDGGGEVILTIPIVDRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARG--IFNRLLPDVHIFTDHRAGPQAG 237 (378)
Q Consensus 160 ~~P~GgGeV~~~~~p~~~l~~i~l~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~--~L~~~~~~v~I~~d~~~~~~~~ 237 (378)
|||+|||||.++|+| .+++|++++++|++++|||+++++++|+++++||+++|++ .|+..+++++++++. .+++
T Consensus 157 ~yP~GGGeV~~~i~p-~~l~pi~l~e~G~i~~irg~~~~~~l~~~ia~R~~~~a~~~~~l~~~~~~~~i~~~~---~~~~ 232 (343)
T PRK04204 157 FYPAGGGEVALEVEP-SKLRPLELLERGELLRIRGISHVANLPEHVAERQAKAAAELLALSLGLIEIEINVEE---LSRG 232 (343)
T ss_pred ccCCCCeEEEEEEcc-CCccceeeccCCCcEEEEEEEEecCCCHHHHHHHHHHHhhhhhhhccCCCceeEEee---ccCC
Confidence 999999999999999 5899999999999999999999999999999999999999 998888999987754 3456
Q ss_pred CCCceEEEEEEEecCceEEeEecccccCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcCCCCCcCChhHHHHHHh
Q 017072 238 KSPGYGISLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCA 317 (378)
Q Consensus 238 ~~~G~~i~L~aet~~g~~~~~d~~~~~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mA 317 (378)
.+||++++|||||+ ||++++|+++++| ++||+||++||++|++|+++|||||+|||||+++|||
T Consensus 233 ~s~G~gi~L~aet~-g~~~~~~~lg~~g---------------~~aE~vg~~aa~~Ll~~i~~gg~vD~~lqdqll~~mA 296 (343)
T PRK04204 233 LGPGSGIVLWAESE-HITEGFDALGERG---------------KPAEVVGEEAAEELLRYLASGAAVDEHLADQLILPMA 296 (343)
T ss_pred CCCceEEEEEEEEC-CEEEEEEecCCCC---------------CCHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHH
Confidence 89999999999998 9999999999888 8999999999999999999999999999999999999
Q ss_pred hcCCCcceEEecCCCHHHHHHHHHHHhhcCcEEEEeeCC
Q 017072 318 LSEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDP 356 (378)
Q Consensus 318 La~~~~S~i~~g~lT~h~~t~l~v~~~f~~v~f~i~~~~ 356 (378)
||++ +|+|+++++|+|++|++|++++||+++|++++.+
T Consensus 297 La~g-~S~i~~~~lT~h~~t~l~vi~~f~~v~f~v~~~~ 334 (343)
T PRK04204 297 LAGG-EGSFTVAELTSHLLTNIWVVEKFLPVKFEVEEYD 334 (343)
T ss_pred hCCC-CceEEecCCCHHHHHHHHHHHHhcCcEEEEEEcC
Confidence 9987 8999999999999999999999999999998763
No 5
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=100.00 E-value=2.1e-99 Score=741.12 Aligned_cols=316 Identities=33% Similarity=0.506 Sum_probs=308.1
Q ss_pred ChHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEecC
Q 017072 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCG 91 (378)
Q Consensus 12 G~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d~~ 91 (378)
|+|+||+|++||+|+||||+|+|||++|++|||++||+++|+|++++|||++.+++.+||+|+|.||.+.+|+ |+|||+
T Consensus 9 GgQilR~alaLS~ltg~pv~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~gst~l~f~Pg~i~gG~-~~~d~~ 87 (326)
T cd00874 9 GGQILRTALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAELGSTELEFEPGKIKGGD-YEFDIG 87 (326)
T ss_pred chHHHHHHHHHHHHhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCccCCc-EEEeCC
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCCCCCCcEEEEE
Q 017072 92 VSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILT 171 (378)
Q Consensus 92 tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~P~GgGeV~~~ 171 (378)
|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++||++ +++++.||||||+|||||.++
T Consensus 88 tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~---~~l~v~rRG~yP~GgGeV~~~ 164 (326)
T cd00874 88 TAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIE---AELEVLRRGFYPRGGGEVVLT 164 (326)
T ss_pred CCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCc---EEEEEEeCCcCCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred EecCCCccceEeeecCceeEEEEEEEecccchhHHHHHHHHHHHHhhh-cCCceeEEeeccCCCCCCCCCceEEEEEEEe
Q 017072 172 IPIVDRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNR-LLPDVHIFTDHRAGPQAGKSPGYGISLVAET 250 (378)
Q Consensus 172 ~~p~~~l~~i~l~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~~L~~-~~~~v~I~~d~~~~~~~~~~~G~~i~L~aet 250 (378)
|+|+++++|+++.++|++++|||+++++++|+++++||+++|++.|++ +.+|++|+.|..+ +.+||++++|||||
T Consensus 165 v~p~~~l~~i~l~~~g~i~~irg~~~~~~l~~~va~r~~~~a~~~L~~~~~~dv~i~~~~~~----~~s~G~~i~L~aet 240 (326)
T cd00874 165 VEPSKLLPPLLLEERGEIEKIRGISHAANLPPHVAERQAEAAAALLRKALGLQIEIEPEDQS----ALGPGSGIVLWAEY 240 (326)
T ss_pred EecccCCCcceeecCCCeEEEEEEEEEccCCHHHHHHHHHHHHHHHhhccCCCeEEEEEecC----CCCCCEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999998 8889999988754 58999999999999
Q ss_pred cCceEEeEecccccCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcCCCCCcCChhHHHHHHhhcCCCcceEEecC
Q 017072 251 TSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVSKVRVGK 330 (378)
Q Consensus 251 ~~g~~~~~d~~~~~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~~~~S~i~~g~ 330 (378)
++ |++++|++++++ ++||+||++||++|++++++|||||+||||||++|||||+ +|+|++|+
T Consensus 241 ~~-~~~~~~~lg~~g---------------~~aE~vg~~aa~~Ll~~i~~gg~vD~~lqdqlll~mALa~--~s~i~~~~ 302 (326)
T cd00874 241 EH-SRLGFSALGKKG---------------VPAEKVGEEAAEELLAYLSSGAAVDEHLADQLIPFMALAG--GSEFRTGE 302 (326)
T ss_pred Cc-EEEEEEEcCCCC---------------CCHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHhcC--CceEEecC
Confidence 99 999999999887 8999999999999999999999999999999999999997 69999999
Q ss_pred CCHHHHHHHHHHHhhcCcEEEEe
Q 017072 331 LSPYGIEMLRNIFDFLDIRFDIM 353 (378)
Q Consensus 331 lT~h~~t~l~v~~~f~~v~f~i~ 353 (378)
+|+|++|++|++|+|+|++|+|+
T Consensus 303 lT~h~~t~l~vi~~f~~v~f~i~ 325 (326)
T cd00874 303 LTLHLQTNIWVIEKFLGVKFRIE 325 (326)
T ss_pred CCHHHHHHHHHHHHhcCcEEEEe
Confidence 99999999999999999999996
No 6
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=100.00 E-value=2.9e-99 Score=744.70 Aligned_cols=337 Identities=53% Similarity=0.845 Sum_probs=323.8
Q ss_pred cceEEEeChHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCc
Q 017072 5 TSYKRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGR 84 (378)
Q Consensus 5 ~~~i~~dG~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~ 84 (378)
.+|++|.|||+||+||+||+||||||+|+|||+||+||||++||+++|+|++++|+|++++++++||+|+|.||.+++|+
T Consensus 2 ~~~~~fgGgQilR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~gst~l~F~PG~i~gG~ 81 (341)
T cd00875 2 KKILIFKGSNFFRQRLVLATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYKPGLITGGV 81 (341)
T ss_pred CceEEecCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeecCceEEEEECCCccCCc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCCCCC
Q 017072 85 NLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDG 164 (378)
Q Consensus 85 ~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~P~G 164 (378)
|+|||+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++||+.++.+++++.||||||+|
T Consensus 82 -~~~d~gtagSI~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~~~~~~l~v~rrG~yP~G 160 (341)
T cd00875 82 -LNHDCPVSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIPDEELELKILKRGVAPGG 160 (341)
T ss_pred -EEEeCCCCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCccceEEEEEeccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999655699999999999999
Q ss_pred CcEEEEEEecCCCccceEeeecCceeEEEEEEEecccchhHHHHHHHHHHHHhhhcCCceeEEeeccCCCCCCCCCceEE
Q 017072 165 GGEVILTIPIVDRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGI 244 (378)
Q Consensus 165 gGeV~~~~~p~~~l~~i~l~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~~L~~~~~~v~I~~d~~~~~~~~~~~G~~i 244 (378)
||||.++++|+++++|++++++|++++|||+++++++|+++++||+++|++.|++.+||++|++|+.++++++.+||+++
T Consensus 161 gG~V~~~~~~~~~l~~i~l~~~G~i~~irG~~~~~~l~~~va~r~~~~a~~~L~~~~~dv~i~~~~~~~~~~~~~~G~gi 240 (341)
T cd00875 161 GGEVGFRCPVRKPLTPHLNDSPGRIKRIRGVAYSTRVSPSIANRMIDAARGVLNPFIPDVYIYTDVRKGDNSGKSPGFGI 240 (341)
T ss_pred CEEEEEEecCcccccceeeccCCceEEEEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEecccccCCCCCCeEE
Confidence 99999999998899999999999999999999999999999999999999999999999999999777777889999999
Q ss_pred EEEEEecCceEEeEecccccCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcCCCCCcCChhHHHHHHhhcCCCcc
Q 017072 245 SLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVS 324 (378)
Q Consensus 245 ~L~aet~~g~~~~~d~~~~~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~~~~S 324 (378)
+|||||++||++++|++++++. ...+||+||++||++|++||++|||||+|+||||++|||||++++|
T Consensus 241 ~L~aet~~g~~~~~~~~g~~g~------------~~~~aE~vg~~aa~~Ll~ei~~gg~vD~~lqdqll~~mALa~~~vs 308 (341)
T cd00875 241 SLVAETTTGVLYSAENVSPAGG------------ESEVPEDLGRECAYQLLEEISRGGCVDSYQQPLALLLMALGSEDVG 308 (341)
T ss_pred EEEEEECCCEEEEEeecCCCCC------------CCCCHHHHHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhCCCCce
Confidence 9999999999999999998882 1136999999999999999999999999999999999999988899
Q ss_pred eEEec-CCCHHH--HHHHHHHHhhcCcEEEEee
Q 017072 325 KVRVG-KLSPYG--IEMLRNIFDFLDIRFDIMP 354 (378)
Q Consensus 325 ~i~~g-~lT~h~--~t~l~v~~~f~~v~f~i~~ 354 (378)
++++| ++|+|+ +..+|++++|||++|++++
T Consensus 309 ~~~~g~~~~~~~~~i~~lr~lk~f~~~~f~~~~ 341 (341)
T cd00875 309 RLRLGGPLIDEEFKIHLLRDLKEFFGIMFKIDD 341 (341)
T ss_pred eEEeccccCcchhHHHHHHHHHHhhCeEEeccC
Confidence 99997 899999 9999999999999999863
No 7
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=100.00 E-value=4.6e-98 Score=717.47 Aligned_cols=325 Identities=33% Similarity=0.523 Sum_probs=313.5
Q ss_pred ceEEEeCh------HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCc
Q 017072 6 SYKRLKGS------QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGI 79 (378)
Q Consensus 6 ~~i~~dG~------q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~ 79 (378)
.||++||+ |+||+||+||+|||+||||.|||++|+||||++||+++||+++++|||++.+++++||+|.|.||.
T Consensus 1 ~~i~iDGs~geGGGQilRtal~LS~ltG~pvrI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~Pg~ 80 (341)
T COG0430 1 RMIEIDGSYGEGGGQILRTALALSALTGKPVRIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAELGSTELVFRPGK 80 (341)
T ss_pred CeeecccccccCCceeehHHHHHHHhcCCceEEEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeeccceEEEEeccc
Confidence 38899975 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeC
Q 017072 80 VMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRG 159 (378)
Q Consensus 80 i~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG 159 (378)
+++|+ |+|||+|||||+||||++||+++|++.|++++++||||++|||++||+++|++|+|+|||+. +++++.|||
T Consensus 81 i~gG~-~~~digTAGsi~LvlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~---~~l~vlkRG 156 (341)
T COG0430 81 IRGGD-YRVDIGTAGSITLVLQTLLPLLLFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIE---CELEVLKRG 156 (341)
T ss_pred eeCce-EEEEecCCCceeeeHHHHHHHhhcCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccc---eEEEEEecc
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCCCCcEEEEEEecCCCccceEeeecCceeEEEEEEEecccchhHHHHHHHHHHHHhhhcCCceeEEeeccCCCCCCCC
Q 017072 160 SPPDGGGEVILTIPIVDRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKS 239 (378)
Q Consensus 160 ~~P~GgGeV~~~~~p~~~l~~i~l~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~~L~~~~~~v~I~~d~~~~~~~~~~ 239 (378)
|||+|||||.++++|.....++++.++|++.+|+|+++++++|+|+|+||+++|++.|++..++++|+++..+.. .|
T Consensus 157 ~yP~GGGeV~~~V~p~~~~~~l~l~e~g~i~~v~Gia~~~~lp~hvAeRqa~~A~~~L~~~~~~v~i~~~~~~~~---~s 233 (341)
T COG0430 157 FYPRGGGEVLLTVEPPKEKLPLHLTERGEIEKVRGIAHSTNLPPHVAERQAEAAKELLGKLGLEVEIYTEVRRGG---LS 233 (341)
T ss_pred cCCCCCcEEEEEEcCccccCceeeecccceeEEEEEEEeccCCcHHHHHHHHHHHHHhhhccCCceEEEeecccC---CC
Confidence 999999999999999877667999999999999999999999999999999999999998889999998876543 69
Q ss_pred CceEEEEEEEecCceEEeEecccccCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcCCCCCcCChhHHHHHHhhc
Q 017072 240 PGYGISLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALS 319 (378)
Q Consensus 240 ~G~~i~L~aet~~g~~~~~d~~~~~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa 319 (378)
||++|+|||+++ ++++++|+++++| ++||+||++||++|++++++++|||+||+||+++|||||
T Consensus 234 pG~gI~L~ae~~-~~~~g~~~lGe~G---------------~~aE~Vg~~aa~~Ll~~l~sgaavD~hlaDqli~~mala 297 (341)
T COG0430 234 PGSGIVLWAESE-GSRIGADALGEKG---------------KSAEVVGEEAAKELLRELESGAAVDEHLADQLIPYMALA 297 (341)
T ss_pred CCceEEEEEeec-CceeehhhcccCC---------------CCHHHHHHHHHHHHHHHhhcCCccchhhhhhhhhHHhhc
Confidence 999999999998 8999999999999 899999999999999999999999999999999999999
Q ss_pred CCCcceEEecCCCHHHHHHHHHHHhhcCcEEEEeeC
Q 017072 320 EPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPD 355 (378)
Q Consensus 320 ~~~~S~i~~g~lT~h~~t~l~v~~~f~~v~f~i~~~ 355 (378)
. .|++++.++|.|++||+|++|+|++++|+++.+
T Consensus 298 g--~g~~~v~e~t~Hl~tni~vie~Fl~~~~~~~~~ 331 (341)
T COG0430 298 G--IGEFTVAEVTSHLLTNIWVIERFLGVEFEVEGE 331 (341)
T ss_pred c--CceEEeeeeehhhhhhHHHHHHhcCeeEEeecc
Confidence 6 589999999999999999999999999997665
No 8
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=100.00 E-value=2.7e-95 Score=715.76 Aligned_cols=325 Identities=28% Similarity=0.419 Sum_probs=312.4
Q ss_pred EeChHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEe
Q 017072 10 LKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHD 89 (378)
Q Consensus 10 ~dG~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d 89 (378)
+.|||+||+||+||+||||||+|.|||+||+||||++||+++|+|++++|+|++++++.+||+|+|.||.+++|+ |+||
T Consensus 7 egGgQilR~alaLS~ltgkpvrI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~gst~l~F~Pg~i~gG~-~~~d 85 (338)
T cd00295 7 EGGCEILRHALSLAMISGQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAELGGQRFIFRPGNIIGGD-VRFA 85 (338)
T ss_pred cCchHHHHHHHHHHHhhCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcccCCe-EEEe
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCCCCCCcEEE
Q 017072 90 CGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVI 169 (378)
Q Consensus 90 ~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~P~GgGeV~ 169 (378)
|+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++||++ +++.+.||||||.|||++.
T Consensus 86 ~gtagSi~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~---~~~~~~r~g~~p~ggG~~~ 162 (338)
T cd00295 86 CGSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIH---GDELELRHGFRGAAGGGGA 162 (338)
T ss_pred CCCCcchHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCc---ccceEEEEEEecCCCCeEE
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred EEEecCCCccce----EeeecCceeEEEEEEEecccchhHHHHHHHHHHHHhhhcCCceeEEeeccCCCCCCCCCceEEE
Q 017072 170 LTIPIVDRLMAV----RWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGIS 245 (378)
Q Consensus 170 ~~~~p~~~l~~i----~l~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~~L~~~~~~v~I~~d~~~~~~~~~~~G~~i~ 245 (378)
..+.|...++|+ ++.++|++++|||+++++++|+++++||+++|++.|+.+.||++|++|..++++.+.+||++++
T Consensus 163 ~~~~p~~~~~~l~~~~~l~~~G~~~~irg~~~~~~l~~~va~R~~~~a~~~l~~~~~dv~i~~~~~~~~~~~~s~G~gi~ 242 (338)
T cd00295 163 EENFLCASFKELLLGERGSEFGRQFRGEGIAAGTRVPPAFAEREIASAAGSFNLFEPDIFILPDDQRGDECGNGPGNSIS 242 (338)
T ss_pred EEEeccCcccccccchhhccCCceEEEEEEEEEccCCHHHHHHHHHHHHHHhcccCCceEEEEeccccccCCCCCCeEEE
Confidence 999998778787 5667799999999999999999999999999999999888999999998767778899999999
Q ss_pred EEEEecCceEEeEecccccCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcCCCCCcCChhHHHHHHhhcCCCcce
Q 017072 246 LVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVSK 325 (378)
Q Consensus 246 L~aet~~g~~~~~d~~~~~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~~~~S~ 325 (378)
|||||++||++++|++++++ ++||+||++||++|++||++|||||+|+|||+++|||||+++ ++
T Consensus 243 L~aet~~g~~~~~~~lg~~g---------------~~aE~vg~~aa~~L~~~i~~gg~vD~~lqdqlll~mALa~g~-~~ 306 (338)
T cd00295 243 LEAESEKGCSEAAEHCGEAG---------------ESAEDVAAFCAKELKEVIASGAAVDEYLADQLLLGMALAGEA-GE 306 (338)
T ss_pred EEEEECCCEEEEEEEcCCCC---------------CCHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHhcCCC-cc
Confidence 99999999999999999888 899999999999999999999999999999999999999876 66
Q ss_pred EEecCCCHHHH--HHHHHH-HhhcCcEEEEee
Q 017072 326 VRVGKLSPYGI--EMLRNI-FDFLDIRFDIMP 354 (378)
Q Consensus 326 i~~g~lT~h~~--t~l~v~-~~f~~v~f~i~~ 354 (378)
+++..+|.|+. |++|++ ++|||++|++++
T Consensus 307 ~~~~~~t~H~~~~t~~~~~~~~f~~~~f~i~~ 338 (338)
T cd00295 307 FIVAGPLCHLLQLTNFARDVEAFFNCEFRFIE 338 (338)
T ss_pred EEeccccccchhHHHHHHHHHHhcCcEEEEEC
Confidence 88899999999 999999 999999999974
No 9
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=100.00 E-value=1.3e-76 Score=553.87 Aligned_cols=222 Identities=45% Similarity=0.722 Sum_probs=196.8
Q ss_pred EeChHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEe
Q 017072 10 LKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHD 89 (378)
Q Consensus 10 ~dG~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d 89 (378)
+.|||+||+|++||+|+||||+|+|||++|+||||++||+++|+|++++|||++++++++||+|+|.||.+++|+ |+||
T Consensus 7 egGgq~lR~~laLS~l~gkpi~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~~st~l~f~Pg~i~~g~-~~~d 85 (228)
T PF01137_consen 7 EGGGQILRTALALSALTGKPIRIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISLGSTELTFRPGEIRGGD-YTFD 85 (228)
T ss_dssp CCSTCCHHHHHHHHHHHT--EEEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEESTTSSEEEEE--EE-ECE-EEEE
T ss_pred cCchHHHHHHHHHHhccCCCEEEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceecCCcEEEEECCCccCCc-EEEe
Confidence 457799999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCCCCCCcEEE
Q 017072 90 CGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVI 169 (378)
Q Consensus 90 ~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~P~GgGeV~ 169 (378)
|+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++||++ .++++.||||||+|||||.
T Consensus 86 ~~tagsi~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~---~~l~i~krG~~P~GgGeV~ 162 (228)
T PF01137_consen 86 CGTAGSISLVLQALLPLLLFAKGPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIP---VELKIIKRGFYPKGGGEVQ 162 (228)
T ss_dssp EETTCBHHHHHHHHCCCHCCSSSEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-E---CEEEEEE--BTTTB-EEEE
T ss_pred cCCCceeeeeHHHHHHHHHhcCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCC---cEEEEEEeccCCCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999 8899999999999999999
Q ss_pred EEEecCCCccceEeeecCceeEEEEEEEecccchhHHHHHHHHHHHHhhhcCCceeEEeeccCCCCCCCCCceEEEEEEE
Q 017072 170 LTIPIVDRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAE 249 (378)
Q Consensus 170 ~~~~p~~~l~~i~l~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~~L~~~~~~v~I~~d~~~~~~~~~~~G~~i~L~ae 249 (378)
++|+|++.++|++
T Consensus 163 ~~v~p~~~l~~i~------------------------------------------------------------------- 175 (228)
T PF01137_consen 163 LRVPPVKPLKPID------------------------------------------------------------------- 175 (228)
T ss_dssp EEEE-SSS---EE-------------------------------------------------------------------
T ss_pred EEEEccccccccc-------------------------------------------------------------------
Confidence 9999999999998
Q ss_pred ecCceEEeEecccccCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcCCCCCcCChhHHHHHHhhcCCCcceEEec
Q 017072 250 TTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALSEPDVSKVRVG 329 (378)
Q Consensus 250 t~~g~~~~~d~~~~~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~~~~S~i~~g 329 (378)
||||+|||||+++|||||++++|++++|
T Consensus 176 ----------------------------------------------------g~vD~~~qdqll~~mALa~g~vS~i~~g 203 (228)
T PF01137_consen 176 ----------------------------------------------------GCVDEHLQDQLLLFMALAKGDVSRIRVG 203 (228)
T ss_dssp ----------------------------------------------------CSS-HHHHHHHHHHHHCCTSSEEEEEES
T ss_pred ----------------------------------------------------hhhhhhhHHHHHHHHHhCCCCceEEEec
Confidence 9999999999999999999889999999
Q ss_pred CCCHHHHHHHHHHHhhcCcEEEEee
Q 017072 330 KLSPYGIEMLRNIFDFLDIRFDIMP 354 (378)
Q Consensus 330 ~lT~h~~t~l~v~~~f~~v~f~i~~ 354 (378)
++|+|++|++|++|+|+|++|++++
T Consensus 204 ~lt~h~~t~l~vi~~fl~v~f~v~~ 228 (228)
T PF01137_consen 204 PLTLHTVTNLRVIEQFLGVKFKVEE 228 (228)
T ss_dssp CSSHHHHHHHHHHHHHCS-EEEE--
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEeC
Confidence 9999999999999999999999974
No 10
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=100.00 E-value=5.5e-32 Score=251.11 Aligned_cols=167 Identities=31% Similarity=0.520 Sum_probs=158.5
Q ss_pred ChHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEecC
Q 017072 12 GSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCG 91 (378)
Q Consensus 12 G~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d~~ 91 (378)
|.|.+|+.++||+|+|+||+|.|||.++.+|||+.||.+++++++++|+++....+.+++.++|.|+.+++++ +.++|.
T Consensus 9 d~s~a~~~lala~l~g~~i~I~~i~~~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~i~~~p~~l~g~~-i~~~~~ 87 (211)
T cd01553 9 GGQILRSFLVLAAISGGPITVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFRPGTVRGGD-VRFAIG 87 (211)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEEeccCCCCccccHHHHHHHHHHHHHcCCeEEeeecCCceEEEeCCCccceE-EEeccC
Confidence 4599999999999999999999999999999999999999999999999988877788899999999999999 999999
Q ss_pred CCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCCCCCCcEEEEE
Q 017072 92 VSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVILT 171 (378)
Q Consensus 92 tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~P~GgGeV~~~ 171 (378)
++||+++++|+++++++|++.+++|+..|+|+++|||+.|+.+.+++|.|++||++ ++.+..||||||.|+|++.+.
T Consensus 88 s~g~~~d~~~~l~~la~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~---~~~~~~~~~~~~~g~g~~~~~ 164 (211)
T cd01553 88 SAGSCTDVLQTILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAH---QEETLLRHGFYPAGGGVVATE 164 (211)
T ss_pred CcccHHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCc---ceeeeeeeeeccCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred EecCCCccceE
Q 017072 172 IPIVDRLMAVR 182 (378)
Q Consensus 172 ~~p~~~l~~i~ 182 (378)
+.|...+++.+
T Consensus 165 i~g~~~l~~~~ 175 (211)
T cd01553 165 VSPVEKLNTAQ 175 (211)
T ss_pred EcCCccccccc
Confidence 98865555443
No 11
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=99.90 E-value=2.4e-23 Score=172.27 Aligned_cols=103 Identities=41% Similarity=0.607 Sum_probs=90.7
Q ss_pred eecCceeEEEEEEEecccchhHHHHHHHHHHHHhhhcCCceeEEeeccCCCCCCCCCceEEEEEEEecCceEEeEecccc
Q 017072 184 LDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKSPGYGISLVAETTSGCFISVDTAVS 263 (378)
Q Consensus 184 ~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~~L~~~~~~v~I~~d~~~~~~~~~~~G~~i~L~aet~~g~~~~~d~~~~ 263 (378)
++||++++|+|+++++++|+++++||++.|++.|++..++++|+.|..+....+.+||++|+|||||++||+++++++++
T Consensus 1 terG~~~~i~g~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ae~~~g~~~g~~alG~ 80 (103)
T PF05189_consen 1 TERGRLKRIRGIAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVAETENGCVLGFSALGE 80 (103)
T ss_dssp -C--SECEEEEEEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEEEETTS-EEEEEEEE-
T ss_pred CCCCceEEEEEEEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEEEECCCEEEEEEecCC
Confidence 58999999999999999999999999999999999999999999988777778899999999999999999999999999
Q ss_pred cCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcC
Q 017072 264 YARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKG 301 (378)
Q Consensus 264 ~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g 301 (378)
++ ++||+||++||++|+++|++|
T Consensus 81 ~g---------------~~aE~Vg~~Aa~~L~~~i~~G 103 (103)
T PF05189_consen 81 RG---------------VPAEKVGEEAAEELLEYIRSG 103 (103)
T ss_dssp TT---------------S-HHHHHHHHHHHHHHHHCT-
T ss_pred CC---------------CCHHHHHHHHHHHHHHHHhcC
Confidence 98 899999999999999999876
No 12
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=92.84 E-value=2 Score=43.53 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=57.9
Q ss_pred HHHHHHhhcCC-cEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEecCCCchh
Q 017072 18 QRLVLSTLAST-PVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSI 96 (378)
Q Consensus 18 ~alaLS~ltgk-pi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d~~tagSi 96 (378)
...++++..+. ++.+..--.-+.+| . ...++.+.++ |..++... ..+...++.+++++ +.+|+++++.+
T Consensus 97 ~~~~~~~~~~~~~v~~~g~~~l~~Rp-~----~~~~~~L~~l--Ga~v~~~~--~~i~v~~~~l~~~~-~~ld~~ss~~~ 166 (417)
T PRK12830 97 FMGALLGRFKKAVVGLPGGCDLGPRP-I----DQHIKGFEAL--GAEVTNEG--GAIYLKADELKGAH-IYLDVVSVGAT 166 (417)
T ss_pred HHHHHhcCCCceEEEecCCCccCCCc-C----HHHHHHHHHC--CCEEEEcC--CEEEEEeCCccCCE-EECCCCCHHHH
Confidence 44444444344 77775322222222 2 2335555555 33444333 24555666678888 99998554322
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 97 GYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 97 ~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
+ - ++..+++++.++.+ ++ ....|.++.+ +..|++||++
T Consensus 167 ~---~-ll~a~~~~~g~~~i--~~---~~~~~~i~~l----~~~L~~~G~~ 204 (417)
T PRK12830 167 I---N-IMLAAVKAKGRTVI--EN---AAKEPEIIDV----ATLLNNMGAN 204 (417)
T ss_pred H---H-HHHHHHcCCCeEEE--cc---CCcCCcHHHH----HHHHHHCCCE
Confidence 2 2 44555577776644 33 3334555543 5689999998
No 13
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=92.45 E-value=3.7 Score=41.76 Aligned_cols=117 Identities=23% Similarity=0.232 Sum_probs=69.2
Q ss_pred EEEeChHHHHH-HHHHHhhcCCcEEEeEeeCCCCCCCChH--HHHHHHHHHHHHccceeeeeeccceEEEEeCCcccC--
Q 017072 8 KRLKGSQSLRQ-RLVLSTLASTPVLIDDIRADDTMPGLRP--HEISLLRLLERICDDCVVEINETGTELEYKPGIVMG-- 82 (378)
Q Consensus 8 i~~dG~q~lR~-alaLS~ltgkpi~I~nIR~~r~~PGL~~--qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~-- 82 (378)
|++.|+....+ +|++++++..+.+|.|. ++-++ .|+.+|+.+ |..+.. ..+.-.+....+
T Consensus 17 i~~p~sks~~~r~l~~a~La~g~s~i~~~------~~~~dv~~~~~~L~~l-----G~~i~~----~~~~i~~~~~~~~~ 81 (435)
T PRK02427 17 VRVPGSKSISHRALLLAALAEGETTITNL------LRSEDTLATLNALRAL-----GVEIED----DEVVVEGVGGGGLK 81 (435)
T ss_pred EEcCCChHHHHHHHHHHHhcCCCEEEcCC------CccHHHHHHHHHHHHc-----CCeEEc----ceEEEEccCCCCCC
Confidence 56667755444 39999999999999875 45555 555555543 333332 233333311211
Q ss_pred -CceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 83 -GRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 83 -g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
-. ..+|++.+|+..++ +++++..++. +++|+|+-.-. .+++ ..++-.|++||++ ++.
T Consensus 82 ~~~-~~i~~~~sg~~~r~---l~~laa~~~~--~~~i~g~~~l~-~r~~----~~l~~~L~~lGa~---i~~ 139 (435)
T PRK02427 82 EPE-DVLDCGNSGTTMRL---LTGLLALQPG--EVVLTGDESLR-KRPM----GRLLDPLRQMGAK---IEG 139 (435)
T ss_pred CCC-CEEEccCchHHHHH---HHHHHHhCCC--eEEEECChhhc-cCCh----HHHHHHHHHCCCE---EEe
Confidence 12 35899988877774 5555655655 67788754322 3333 2344578999997 654
No 14
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=92.44 E-value=6.1 Score=40.54 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=74.4
Q ss_pred EEEeChHHHHHH-HHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeC--CcccC-C
Q 017072 8 KRLKGSQSLRQR-LVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKP--GIVMG-G 83 (378)
Q Consensus 8 i~~dG~q~lR~a-laLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~P--g~i~~-g 83 (378)
|.+-|+...-++ |++|+++.-|.+|.|.=.. .-=...++++..+ |..+..+..+.++...+ +.+.. .
T Consensus 16 i~~p~sKs~~~r~l~~a~la~~~s~i~~~~~~-------~D~~~~~~~l~~l--G~~~~~~~~~~~~~i~~~~~~~~~~~ 86 (443)
T PLN02338 16 VKLPGSKSLSNRILLLAALSEGTTVVDNLLDS-------DDIRYMLGALKTL--GLNVEEDSENNRAVVEGCGGKFPVSG 86 (443)
T ss_pred EEcCCcHHHHHHHHHHHHhCCCCEEEcCCCcC-------HHHHHHHHHHHHc--CCeEEecCCCCeEEEEecCCCcCCcc
Confidence 566677666666 8899999999999875432 2334556666654 23444333333444433 11211 1
Q ss_pred ----ceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 84 ----RNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 84 ----~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
. ..+||+.+|....+ ++++++....+..++|.|+-.-. +++++.+ +-.|++||+.
T Consensus 87 ~~~~~-~~i~~g~sgt~~r~---l~~~~~~~~~~~~~~~~g~~~l~-~Rp~~~l----~~~L~~lGa~ 145 (443)
T PLN02338 87 DSKED-VELFLGNAGTAMRP---LTAAVTAAGGNASYVLDGVPRMR-ERPIGDL----VDGLKQLGAD 145 (443)
T ss_pred ccccc-ceEEcCCcchHHHH---HHHHHHhCCCCceEEEECChhhc-cCCchHH----HHHHHHCCCE
Confidence 2 46899999988876 56665554444577888877643 4444433 4468899997
No 15
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=90.46 E-value=7.4 Score=42.40 Aligned_cols=118 Identities=20% Similarity=0.276 Sum_probs=72.4
Q ss_pred EEEeChHHHHHH-HHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeC-C-cccCCc
Q 017072 8 KRLKGSQSLRQR-LVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKP-G-IVMGGR 84 (378)
Q Consensus 8 i~~dG~q~lR~a-laLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~P-g-~i~~g~ 84 (378)
|.+-|+-.+-++ |.|++++..+.+|+|.=. ...=...++.+.++ |..+..+ +.+++..+ | .+..+.
T Consensus 19 i~~pgsKs~s~R~l~lAaLa~g~s~i~~~l~-------s~D~~~~l~aL~~L--Ga~i~~~--~~~i~I~g~g~~l~~~~ 87 (661)
T PRK11860 19 VRLPGSKSISNRVLLLAALSEGTTTVRDLLD-------SDDTRVMLDALRAL--GCGVEQL--GDTYRITGLGGQFPVKQ 87 (661)
T ss_pred EEcCCCHHHHHHHHHHHHhCCCCEEEccCCc-------cHHHHHHHHHHHHc--CCEEEec--CCEEEEECCCCCcCCCC
Confidence 566677555554 789999999999988221 22233455666655 3344322 22344454 3 244456
Q ss_pred eEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 85 NLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 85 ~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
..++|+.+|+... +++++++..+. ..+|+|...- .+++++.+ +-.|++||+.
T Consensus 88 -~~i~~g~sGtt~r---~Ll~~~al~~g--~~~i~g~~~L-~~RP~~~L----l~~L~~lGa~ 139 (661)
T PRK11860 88 -ADLFLGNAGTAMR---PLTAALALLGG--EYELSGVPRM-HERPIGDL----VDALRQLGCD 139 (661)
T ss_pred -ceEEeCCchHHHH---HHHHHHHcCCC--eEEEECCchh-hcCChHHH----HHHHHHCCCE
Confidence 7789998888754 45566666555 4577775544 35665544 4578999997
No 16
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=89.19 E-value=7 Score=39.19 Aligned_cols=121 Identities=21% Similarity=0.258 Sum_probs=73.3
Q ss_pred EEEeChHHHHH-HHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCC--c
Q 017072 8 KRLKGSQSLRQ-RLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGG--R 84 (378)
Q Consensus 8 i~~dG~q~lR~-alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g--~ 84 (378)
|.+.|+...=+ ++++++++..|++|+|.=. -++ =...+++++++ |..+... +..++..|....+. .
T Consensus 5 i~~~~sKs~~~r~l~~a~l~~g~~~i~~~~~------~~d-v~~~~~~L~~l--G~~i~~~--~~~~~i~g~~~~~~~~~ 73 (409)
T cd01556 5 ITVPGSKSISHRALLLAALAEGESRIENLLD------SDD-TLATLEALRAL--GAKIEEE--GGTVEIVGGGGLGLPPE 73 (409)
T ss_pred EEcCCchHHHHHHHHHHHhcCCCEEECCCCC------CHH-HHHHHHHHHHc--CCeEEec--CCEEEEEcCCCCCCCCC
Confidence 66777744333 5888999999999998222 233 23345555554 4444433 35677777655443 4
Q ss_pred eEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 85 NLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 85 ~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
..++++.+|+...+ +++++..+ +.+++++|+-+. .+++++ .++-.|++||++ ++.
T Consensus 74 -~~i~~~~s~~s~~~---l~~l~~~~--~~~~~i~g~~~l-~~~~~~----~~~~~L~~lGa~---i~~ 128 (409)
T cd01556 74 -AVLDCGNSGTTMRL---LTGLLALQ--GGDSVLTGDESL-RKRPMG----RLVDALRQLGAE---IEG 128 (409)
T ss_pred -ceEEcCCchHHHHH---HHHHHHcC--CCeEEEECCccc-ccCChH----HHHHHHHHCCCE---EEe
Confidence 67788777765554 44444444 457788886433 344443 445679999997 764
No 17
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=88.19 E-value=11 Score=37.74 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=67.2
Q ss_pred eEEEeCh---HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCC-cccC
Q 017072 7 YKRLKGS---QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPG-IVMG 82 (378)
Q Consensus 7 ~i~~dG~---q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg-~i~~ 82 (378)
.++++++ |++-.-++++++++.+++|.+.+ -...|.+. .+ ++.|+++ |..++... ...++..|+ .+.+
T Consensus 147 ~~~i~~~~ss~~~~~ll~aa~l~~g~~~i~~~~-~~~~~~i~-~~---~~~L~~l--Ga~i~~~~-~~~i~I~~~~~l~~ 218 (409)
T cd01556 147 EVEIPGAVSSQFKSALLLAAPLAEGPTTIIIGE-LESKPYID-HT---ERMLRAF--GAEVEVDG-YRTITVKGGQKYKG 218 (409)
T ss_pred EEEeCCCCccHHHHHHHHHHhcCCCceEEEeeC-CCCcCHHH-HH---HHHHHHc--CCcEEecC-CcEEEECCCCcccc
Confidence 3566664 77666677778889999999872 22333322 23 5555554 33443322 145666654 5666
Q ss_pred CceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 83 GRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 83 g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
++ +.+ ...-|. ...++.++++++ .+++++|.... | +. ..++-.|++||++
T Consensus 219 ~~-i~i--~~d~s~---~~~l~~~a~~~~--~~v~i~~~~~~---~---~~-~~~~~~L~~~G~~ 268 (409)
T cd01556 219 PE-YTV--EGDASS---AAFFLAAAAITG--SEIVIKNVGLN---S---GD-TGIIDVLKEMGAD 268 (409)
T ss_pred Ce-eEe--CCcHHH---HHHHHHHHHhcC--CeEEEcCCCCC---C---hH-HHHHHHHHHCCCe
Confidence 65 544 222221 233344444544 67888884333 3 44 6788899999997
No 18
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=87.95 E-value=9 Score=38.88 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=57.9
Q ss_pred HHHHHHhhcCC-cEEEeE-eeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEecCCCch
Q 017072 18 QRLVLSTLAST-PVLIDD-IRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRS 95 (378)
Q Consensus 18 ~alaLS~ltgk-pi~I~n-IR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d~~tagS 95 (378)
...++.+.++. ++.+.. -|-++ +|- -..++.++++ |..++...+...++ .+|.+++++ +.+|+++++.
T Consensus 98 ~l~~~~~~~~~~~~~~~g~~~l~~-Rp~-----~~~~~~L~~l--Ga~v~~~~~~~~v~-~~g~l~~~~-~~l~~~ss~~ 167 (417)
T PRK09369 98 VLGPLLARFGEAKVSLPGGCAIGA-RPV-----DLHLKGLEAL--GAEIEIEHGYVEAK-ADGRLKGAH-IVLDFPSVGA 167 (417)
T ss_pred HHHHHhccCCceEEEecCCCccCC-Cch-----HHHHHHHHHC--CCEEEEECCEEEEE-ecCCcccce-EeCCCCCHHH
Confidence 55555555443 788863 33322 222 1235666665 33443333323333 247788888 8888855442
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 96 IGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 96 i~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
+ -.+|..+++++.+++| +| .. +-+|+. .++-+|++||++
T Consensus 168 ~----~~ll~aa~~~~g~~~i--~~---~~---~~~~i~-~~~~~L~~~G~~ 206 (417)
T PRK09369 168 T----ENILMAAVLAEGTTVI--EN---AA---REPEIV-DLANFLNKMGAK 206 (417)
T ss_pred H----HHHHHHHHhCCCcEEE--eC---CC---cCCcHH-HHHHHHHHCCCE
Confidence 2 2233344667777765 33 22 233444 477889999998
No 19
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=86.48 E-value=19 Score=39.35 Aligned_cols=120 Identities=16% Similarity=0.187 Sum_probs=70.0
Q ss_pred EEeChHHHHH-HHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeC--CcccCCce
Q 017072 9 RLKGSQSLRQ-RLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKP--GIVMGGRN 85 (378)
Q Consensus 9 ~~dG~q~lR~-alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~P--g~i~~g~~ 85 (378)
++-|+-..=+ +|++++++..+.+|+|.= ...-=...++++.++ |..++. .+.+++..+ |.+..+.
T Consensus 256 ~vpgsKS~s~R~l~~AaLa~g~s~i~~~l-------~s~D~~~~~~aL~~l--Ga~i~~--~~~~~~I~g~~~~~~~~~- 323 (673)
T PRK11861 256 RLPGSKSISNRVLLLAALAEGETTVTNLL-------DSDDTRVMLDALTKL--GVKLSR--DGGTCVVGGTRGAFTAKT- 323 (673)
T ss_pred EcCCcHHHHHHHHHHHHhcCCCEEEcCCC-------CCHHHHHHHHHHHHc--CCeEEe--cCCEEEEEcCCCCcCCCC-
Confidence 3334433333 388999999999998821 122334567777776 334432 222344443 3445666
Q ss_pred EEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 86 LVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 86 ~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
..+||+.+|+...+| +++++..+.+ .+|+|+..-. +-+++-+ +-.|++||+. ++.
T Consensus 324 ~~i~~g~sGt~~r~L---~~~~a~~~g~--~~i~G~~~L~-~RPi~~l----l~~L~~lGa~---v~~ 378 (673)
T PRK11861 324 ADLFLGNAGTAVRPL---TAALAVNGGE--YRIHGVPRMH-ERPIGDL----VDGLRQIGAR---IDY 378 (673)
T ss_pred ceEecCCcchHHHHH---HHHHHcCCCe--EEEECChhhc-cCChhHH----HHHHHHCCCc---EEe
Confidence 889999987765544 4444444444 4666666543 3333322 5568889998 653
No 20
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=86.43 E-value=19 Score=36.57 Aligned_cols=116 Identities=25% Similarity=0.345 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccc-eEEEEeCCcccCCceEEEecCC
Q 017072 14 QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETG-TELEYKPGIVMGGRNLVHDCGV 92 (378)
Q Consensus 14 q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~g-t~l~F~Pg~i~~g~~~~~d~~t 92 (378)
..+|.-++|+++.+.++.|.|.-.=+. ++- ...+++|.++ |..++....+ ..++-..+ ...+. ++++++.
T Consensus 94 ~~~r~l~~laa~~~~~~~i~g~~~l~~----r~~-~~l~~~L~~l--Ga~i~~~~~~~~~i~i~g~-~~~~~-~~i~~~~ 164 (435)
T PRK02427 94 TTMRLLTGLLALQPGEVVLTGDESLRK----RPM-GRLLDPLRQM--GAKIEGRDEGYLPLTIRGG-KKGGP-IEYDGPV 164 (435)
T ss_pred HHHHHHHHHHHhCCCeEEEECChhhcc----CCh-HHHHHHHHHC--CCEEEeCCCCCCCEEEecC-CcCcc-EEecCCc
Confidence 789999999999999999986321111 111 3334455443 2333321122 22333332 24555 7777754
Q ss_pred CchhHHHHHHHHHhhhcCC-CCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 93 SRSIGYFLEPLILVGLFAK-KPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 93 agSi~l~lq~lLp~l~f~~-~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
. +-++.++|+++++.. .++++++.+ +....|-++ .++..|++||+.
T Consensus 165 s---s~~~~~lll~aa~~~~g~~~i~~~~--~~~~rp~i~----~~~~~L~~lG~~ 211 (435)
T PRK02427 165 S---SQFVKSLLLLAPLFAEGDTETTVIE--PLPSRPHTE----ITLRMLRAFGVE 211 (435)
T ss_pred C---CHHHHHHHHHHhhccCCCcEEEEcC--CCCCCCHHH----HHHHHHHHCCCe
Confidence 3 445556666666544 777666655 333344333 445789999997
No 21
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=85.70 E-value=23 Score=36.70 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=84.2
Q ss_pred ceEEEeC---hHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCc-cc
Q 017072 6 SYKRLKG---SQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGI-VM 81 (378)
Q Consensus 6 ~~i~~dG---~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~-i~ 81 (378)
..++++| ||++-..|.++.+.. +..+..+=.+.....-+++- +++|+++ |..++.+ +.++...||. +.
T Consensus 159 ~~i~i~~~~SSq~vsslL~~a~l~~-~~~~~~~~~~~~s~~yid~T---~~mL~~F--Gv~v~~~--~~~~~i~~g~~~~ 230 (428)
T COG0128 159 GEVEIDGPVSSQQVSSLLLLAPLLA-EGTTIIVGGVLESKPYIDHT---LDMLKAF--GVEVENE--GYRFYIPGGQKLT 230 (428)
T ss_pred ceEEEeccchHHHHHHHHHHHhhcC-CCcEEEecCccCCccHHHHH---HHHHHHc--CCeEEee--ccEEEECCCcccc
Confidence 4567776 399999999999998 66665333332233334444 4445544 3344444 3367777776 67
Q ss_pred CCceEEEecCCCchhHHHHHHHHHhhhcCCCCeE-EEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCC
Q 017072 82 GGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPIS-IRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGS 160 (378)
Q Consensus 82 ~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~-ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~ 160 (378)
+++ |.+.- .+-|.+|+|=+.+.. ..++ ++++ |+.-.|. +..++-+|++||.+ ++....+.
T Consensus 231 ~~~-~~Vpg-D~SSAafflaAaai~-----~~~~~i~~~---~v~~~~~----~~~~~~vl~~MGa~---i~~~~~~~-- 291 (428)
T COG0128 231 PGD-YDVPG-DYSSAAFFLAAAAIT-----PRSTGITLK---NVQPNPT----DKGILDVLEKMGAD---IEIGDDSV-- 291 (428)
T ss_pred Cce-EEcCC-ChhhHHHHHHHHHhc-----CCCceeeec---cCCcCcc----hhHHHHHHHHcCCe---EEEccCce--
Confidence 777 65433 466778877666544 2222 3332 2211122 44667789999998 77655432
Q ss_pred CCCCCcEEEEEEecCCCccceEeee
Q 017072 161 PPDGGGEVILTIPIVDRLMAVRWLD 185 (378)
Q Consensus 161 ~P~GgGeV~~~~~p~~~l~~i~l~~ 185 (378)
+++.+..+|+++++.-
T Consensus 292 ---------l~V~~~~~l~gi~vd~ 307 (428)
T COG0128 292 ---------LRVRGSGELKGIEVDM 307 (428)
T ss_pred ---------EEEeecCCccCeEeCc
Confidence 5666645688877643
No 22
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=84.49 E-value=26 Score=38.51 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=73.6
Q ss_pred EEEeCh--HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCc---ccC
Q 017072 8 KRLKGS--QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGI---VMG 82 (378)
Q Consensus 8 i~~dG~--q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~---i~~ 82 (378)
+++.|+ ...|. |.+++++..+.+|.|+= -.+.-...++++.++ |..++... +.+++..+.. ...
T Consensus 316 i~ipgskS~~~r~-L~~a~la~g~s~i~~~~-------~~~dv~~ti~~L~~l--G~~v~~~~-~~~~~i~g~~~~~~~~ 384 (735)
T PRK14806 316 IRVPGDKSISHRS-IMLGSLAEGVTEVEGFL-------EGEDALATLQAFRDM--GVVIEGPH-NGRVTIHGVGLHGLKA 384 (735)
T ss_pred EEcCCChhHHHHH-HHHHHhCCCcEEEcCCC-------ccHHHHHHHHHHHHc--CCEEEecC-CCEEEEEcCCCCCCCC
Confidence 667775 22255 88899999998887532 234557788888887 33444322 2345544311 222
Q ss_pred CceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceE
Q 017072 83 GRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLE 152 (378)
Q Consensus 83 g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~ 152 (378)
.+ ..++++.+|+..+++=+++- ..+..+++.|+..-..-| + ..++-.|++||++ ++
T Consensus 385 ~~-~~i~~~~s~ts~~ll~a~la-----~~~~~v~i~G~~~l~~rp-~----~~l~~~L~~~Ga~---i~ 440 (735)
T PRK14806 385 PP-GPLYMGNSGTSMRLLSGLLA-----AQSFDSVLTGDASLSKRP-M----ERVAKPLREMGAV---IE 440 (735)
T ss_pred CC-ceeeccCchHHHHHHHHHHh-----cCCCeEEEECChhhhhCC-h----HHHHHHHHHCCCE---EE
Confidence 23 46788776666666555542 234578999988876555 3 3445568899997 65
No 23
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=83.80 E-value=16 Score=36.86 Aligned_cols=114 Identities=22% Similarity=0.290 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhhcCCcEEEeE---eeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccc--eEEEEeCCcccCCceEE
Q 017072 13 SQSLRQRLVLSTLASTPVLIDD---IRADDTMPGLRPHEISLLRLLERICDDCVVEINETG--TELEYKPGIVMGGRNLV 87 (378)
Q Consensus 13 ~q~lR~alaLS~ltgkpi~I~n---IR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~g--t~l~F~Pg~i~~g~~~~ 87 (378)
+..+|.-++++++.+.+++|++ ++. |+ + ..+ +++|.++ |..+.....+ ..+.-.++ ..+++ +.
T Consensus 78 gt~~r~l~~l~a~~~~~~~i~g~~~l~~-rp---~-~~l---~~~L~~l--Ga~v~~~~~~~~~p~~i~~~-~~~~~-~~ 145 (409)
T TIGR01356 78 GTTARLLTGVLALADGEVVLTGDESLRK-RP---M-GRL---VDALRQL--GAEISSLEGGGSLPLTISGP-LPGGI-VY 145 (409)
T ss_pred hHHHHHHHHHHHcCCCeEEEECCccccc-CC---c-HHH---HHHHHHC--CCEEEEcCCCCcCCEEEecC-CCCCe-EE
Confidence 3789999999999999999986 221 11 1 223 4555554 3344333222 23555555 55677 77
Q ss_pred EecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 88 HDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 88 ~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
++++.+ +-++-++|..++ ...+..+++.|+.... .| |++ .++..|++||++
T Consensus 146 i~~~~S---~q~~salllaa~-~~~~~~~~~~~~~~~~-~~---~i~-~~l~~L~~~G~~ 196 (409)
T TIGR01356 146 ISGSAS---SQYKSALLLAAP-ALQAVGITIVGEPLKS-RP---YIE-ITLDLLGSFGVE 196 (409)
T ss_pred eCCCcc---hHHHHHHHHhcc-ccCCCeeEEecCCCCC-cC---HHH-HHHHHHHHCCcE
Confidence 777532 334445555555 4556677877643332 23 444 466889999997
No 24
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=83.57 E-value=9.5 Score=41.84 Aligned_cols=112 Identities=24% Similarity=0.299 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccce-EEEEeCC-cccCCceEEEec
Q 017072 13 SQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT-ELEYKPG-IVMGGRNLVHDC 90 (378)
Q Consensus 13 ~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt-~l~F~Pg-~i~~g~~~~~d~ 90 (378)
+-.+|...++.+....++.|..--.-+.+| -..|+.+|+ ++ |..+..+..++ -+....+ .+++++ |..+.
T Consensus 395 ~ts~~ll~a~la~~~~~v~i~G~~~l~~rp--~~~l~~~L~---~~--Ga~i~~~~~g~~pi~i~g~~~l~g~~-~~l~~ 466 (735)
T PRK14806 395 GTSMRLLSGLLAAQSFDSVLTGDASLSKRP--MERVAKPLR---EM--GAVIETGEEGRPPLSIRGGQRLKGIH-YDLPM 466 (735)
T ss_pred hHHHHHHHHHHhcCCCeEEEECChhhhhCC--hHHHHHHHH---HC--CCEEEcCCCCcCCEEEECCCCccceE-EeccC
Confidence 477888888877655567776544433344 344445544 33 33443322332 2444544 477777 65553
Q ss_pred CCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 91 GVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 91 ~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
.-+.+..++|..+++++.+++|+ +. .++.++ +..+|++||++
T Consensus 467 ----~ssq~~s~ll~aA~~~~g~~~i~-----~~--~~~~~~----t~~~L~~~G~~ 508 (735)
T PRK14806 467 ----ASAQVKSCLLLAGLYAEGETSVT-----EP--APTRDH----TERMLRGFGYP 508 (735)
T ss_pred ----chHHHHHHHHHHHhccCCceEEe-----cC--cCCHHH----HHHHHHHCCCE
Confidence 23445567888899999988762 33 344455 46889999998
No 25
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=83.43 E-value=22 Score=36.45 Aligned_cols=124 Identities=22% Similarity=0.278 Sum_probs=69.0
Q ss_pred eEEEeCh---HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHH-HHHHHHHccceeeeeeccceEEEEeCCc-cc
Q 017072 7 YKRLKGS---QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISL-LRLLERICDDCVVEINETGTELEYKPGI-VM 81 (378)
Q Consensus 7 ~i~~dG~---q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~-l~ll~~l~~g~~~~~~~~gt~l~F~Pg~-i~ 81 (378)
.++++|. |++=.-++.+.+++.+++|.+...-+..| ++.. +++|+++= ..++...+...++..|+. ++
T Consensus 169 ~~~i~g~~Ssq~~sall~aa~~~~g~~~I~~~~~~~s~p-----~~~~tl~~L~~~G--~~i~~~~~~~~i~i~~~~~l~ 241 (443)
T PLN02338 169 KVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVP-----YVEMTLKLMERFG--VSVEHSDSWDRFFIKGGQKYK 241 (443)
T ss_pred eEEECCCCchHHHHHHHHHHhcCCCCcEEEECCCCCCcc-----HHHHHHHHHHHcC--CeEEecCCceEEEEcCCcccc
Confidence 4567764 55555555566789999998754322233 3333 67777743 234332222456666653 55
Q ss_pred -CCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 82 -GGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 82 -~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
+++ |.++..- .|.++ ++..+++++. +++++|......-| | ..++-.|++||++ ++.
T Consensus 242 ~~~~-~~i~~D~-ssa~~----~la~a~~~~g--~v~i~~~~~~~~~~--d---~~~l~~L~~mGa~---v~~ 298 (443)
T PLN02338 242 SPGN-AYVEGDA-SSASY----FLAGAAITGG--TVTVEGCGTTSLQG--D---VKFAEVLEKMGAK---VEW 298 (443)
T ss_pred CCCe-EEeCCCH-HHHHH----HHHHHHhcCC--eEEECCCCCCCCcc--h---hHHHHHHHHcCCe---EEE
Confidence 456 6655531 23333 2333334443 67888755544333 2 2368899999998 653
No 26
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=83.34 E-value=24 Score=35.60 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=69.1
Q ss_pred EEEeChHHHHH-HHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceE
Q 017072 8 KRLKGSQSLRQ-RLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNL 86 (378)
Q Consensus 8 i~~dG~q~lR~-alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~ 86 (378)
|++-|+...-. +|++|+++.-+.+|+|.=.. ..=...++++.++ |..+. ..+.+++..+-.....+ -
T Consensus 3 i~~p~sKs~~~r~l~~a~la~g~~~i~~~~~~-------~dv~~~~~~l~~l--G~~i~--~~~~~~~i~g~~~~~~~-~ 70 (409)
T TIGR01356 3 IRAPGSKSITHRALILAALAEGETRVRNLLRS-------EDTLATLDALRAL--GAKIE--DGGEVAVIEGVGGKEPQ-A 70 (409)
T ss_pred EECCCCHHHHHHHHHHHHhCCCCEEECCCCcC-------HHHHHHHHHHHHc--CCEEE--ecCCEEEEEccCCCCCC-C
Confidence 45667644444 48999999999999885432 2334556666654 22343 22345555531112223 4
Q ss_pred EEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 87 VHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 87 ~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
.+||+.+|...++ +++++..++. +++|+|+-.-...|--+ ++-.|++||+.
T Consensus 71 ~i~~g~sgt~~r~---l~~l~a~~~~--~~~i~g~~~l~~rp~~~-----l~~~L~~lGa~ 121 (409)
T TIGR01356 71 ELDLGNSGTTARL---LTGVLALADG--EVVLTGDESLRKRPMGR-----LVDALRQLGAE 121 (409)
T ss_pred EEEecCchHHHHH---HHHHHHcCCC--eEEEECCcccccCCcHH-----HHHHHHHCCCE
Confidence 6889888877774 4455555554 56788865443333322 34468889997
No 27
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=82.57 E-value=27 Score=35.13 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=73.1
Q ss_pred eEEEeChHHHHH-HHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcc---cC
Q 017072 7 YKRLKGSQSLRQ-RLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIV---MG 82 (378)
Q Consensus 7 ~i~~dG~q~lR~-alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i---~~ 82 (378)
-++++|+....+ .|.+++++..|.+|.|+-. .++=...++++.++ |..++.. +.+++..+... ..
T Consensus 4 ~v~i~gskS~~~~~L~~a~la~g~~~i~~~~~-------~~dv~~t~~~L~~l--G~~i~~~--~~~~~v~g~~~~~~~~ 72 (408)
T cd01554 4 IIRVPGDKSISHRSLIFASLAEGETKVYNILR-------GEDVLSTMQVLRDL--GVEIEDK--DGVITIQGVGMAGLKA 72 (408)
T ss_pred EEEcCCchHHHHHHHHHHHhCCCcEEEeCCCc-------cHHHHHHHHHHHHc--CCeEEec--CCEEEEEecCCCCCCC
Confidence 377888732222 5788889999999966543 23445567777766 3344322 24565554222 11
Q ss_pred CceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 83 GRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 83 g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
.. ..+|++.+++..+++-+++.. .+.+++++|......-| + ..++-.|++||+. ++.
T Consensus 73 ~~-~~~~~g~s~~~~~~l~a~~~~-----~~~~v~~~G~~~l~~r~-~----~~l~~~L~~~Ga~---i~~ 129 (408)
T cd01554 73 PQ-NALNLGNSGTAIRLISGVLAG-----ADFEVELFGDDSLSKRP-M----DRVTLPLKKMGAS---ISG 129 (408)
T ss_pred CC-ceEEccCccHHHHHHHHHHHc-----CCCeEEEECCchhhcCC-h----HHHHHHHHHCCCE---EEE
Confidence 22 367888778888877665421 23478888876643222 2 2346678899997 654
No 28
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=81.87 E-value=32 Score=34.62 Aligned_cols=108 Identities=12% Similarity=0.165 Sum_probs=65.0
Q ss_pred HHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEecCCCchhHHH
Q 017072 20 LVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYF 99 (378)
Q Consensus 20 laLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d~~tagSi~l~ 99 (378)
++++++++.+++|.|....+ + --.+++.+.++-. .+....+ .+...++.+++ +++|+..-...+-.
T Consensus 233 l~~~~l~~~~v~i~~~~~~~---~----~~~~~~~L~~~G~--~v~~~~~--~i~v~~~~~~~---~~i~~~~~~~~~d~ 298 (408)
T cd01554 233 LVAAAIAPGRLVLQNVGINE---T----RTGIIDVLRAMGA--KIEIGED--TISVESSDLKA---TEICGALIPRLIDE 298 (408)
T ss_pred HHHHhhcCCeEEEecCCCCc---h----hhHHHHHHHHcCC--EEEEeCC--eEEEecCCcee---EEeccccCCCCchH
Confidence 55566777789999876432 1 1335666666542 4443333 36666664443 45666542345557
Q ss_pred HHHHHHhhhcCCCCeEEEEEeccCC--CCCCcHHHHHHHHHHHHhhcCCC
Q 017072 100 LEPLILVGLFAKKPISIRLRGITND--PKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 100 lq~lLp~l~f~~~~~~ltl~GgT~~--~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
+.+++.++.|++.++. |+|.-+. ..++-+ ..+...|++||++
T Consensus 299 ~p~l~~~a~~a~g~~~--i~~~~~lr~ke~dr~----~~~~~~L~~~G~~ 342 (408)
T cd01554 299 LPIIALLALQAQGTTV--IKDAEELKVKETDRI----FVVADELNSMGAD 342 (408)
T ss_pred HHHHHHHHHcCCCcEE--EECcccccccchhhH----HHHHHHHHHcCCE
Confidence 7778888889998775 4454332 223332 2567899999998
No 29
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=80.27 E-value=32 Score=34.51 Aligned_cols=80 Identities=19% Similarity=0.326 Sum_probs=44.5
Q ss_pred HHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcH
Q 017072 51 LLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130 (378)
Q Consensus 51 ~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~ 130 (378)
.++.+.++ |..++...+.-.+. .+|.+++++ +.++++..+..+.++ ..+++++.++++ .+. ..-|.
T Consensus 116 ~~~~L~~l--G~~i~~~~~~~~v~-~~~~~~~~~-~~i~~~~~~~~~~ll----~aa~~~~g~~~i--~~~---~~~~~- 181 (400)
T cd01555 116 HLKGLEAL--GAKIEIEDGYVEAK-AAGRLKGAR-IYLDFPSVGATENIM----MAAVLAEGTTVI--ENA---AREPE- 181 (400)
T ss_pred HHHHHHHC--CCEEEEeCCEEEEe-cCCCccceE-EECCCCCHHHHHHHH----HHHHhCCCeEEE--ecc---cCCcc-
Confidence 45556555 22333222222332 467788888 888876554443332 334667777654 443 22333
Q ss_pred HHHHHHHHHHHhhcCCC
Q 017072 131 DTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 131 Dy~~~v~~p~l~~~G~~ 147 (378)
+. .++..|++||++
T Consensus 182 --i~-~~~~~L~~~G~~ 195 (400)
T cd01555 182 --IV-DLANFLNKMGAK 195 (400)
T ss_pred --HH-HHHHHHHHCCCE
Confidence 33 368899999997
No 30
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=78.84 E-value=15 Score=37.01 Aligned_cols=80 Identities=16% Similarity=0.277 Sum_probs=45.2
Q ss_pred HHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcH
Q 017072 51 LLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130 (378)
Q Consensus 51 ~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~ 130 (378)
.++.+.++ |..++...+...++ ..|.+++++ +.+|+.+.+.++. ++..+++++.+++| +| ....|.+
T Consensus 126 ~i~~L~~~--G~~v~~~~~~~~v~-~~~~l~~~~-~~l~~~~s~~~~~----ll~aa~~~~~~~~i--~~---~~~~~~i 192 (416)
T TIGR01072 126 HLKGLKAL--GAEIVIEDGYVYAS-AKGRLVGAH-IVLDKVSVGATEN----IIMAAVLAEGTTVI--EN---AAREPEI 192 (416)
T ss_pred HHHHHHHC--CCEEEEECCEEEEE-ecCcceeeE-EecCCCCHHHHHH----HHHHHHhCCCcEEE--ec---CCcCcCH
Confidence 45666655 33443333222322 135677777 8888755444443 34555578888755 33 2333433
Q ss_pred HHHHHHHHHHHhhcCCC
Q 017072 131 DTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 131 Dy~~~v~~p~l~~~G~~ 147 (378)
+ .++.+|++||+.
T Consensus 193 ~----~~~~~L~~~G~~ 205 (416)
T TIGR01072 193 V----DLCEFLNKMGAK 205 (416)
T ss_pred H----HHHHHHHHCCCE
Confidence 2 378899999997
No 31
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=71.76 E-value=1.2e+02 Score=31.54 Aligned_cols=144 Identities=24% Similarity=0.268 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhhcC-CcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccc--eEEEEeCCcccCCceEEEe
Q 017072 13 SQSLRQRLVLSTLAS-TPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETG--TELEYKPGIVMGGRNLVHD 89 (378)
Q Consensus 13 ~q~lR~alaLS~ltg-kpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~g--t~l~F~Pg~i~~g~~~~~d 89 (378)
|--+|...+++++.. .++.++-==.=|.+| . --.++.|.++ |..+.....+ .=+.-.-+ +.+|. ++++
T Consensus 94 GTt~R~l~glla~~~~~~~~l~Gd~sl~~RP----m-~~l~~aLr~~--Ga~i~~~~~~~~~Pl~i~G~-~~~~~-i~i~ 164 (428)
T COG0128 94 GTTLRLLTGLLALGSPGETVLTGDESLRKRP----M-GPLVDALRQL--GAKIDGREGEGYLPLTIKGG-LKGGE-VEID 164 (428)
T ss_pred hhHHHHHHHHHhcCCCCeEEEECChhhhhCC----c-HHHHHHHHHC--CcEEEecCCCCcCCEEEECC-CCCce-EEEe
Confidence 378999999999844 888886422211222 1 1235555554 3455444332 12222222 45566 7777
Q ss_pred cCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCCCCCCcEEE
Q 017072 90 CGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEVI 169 (378)
Q Consensus 90 ~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~P~GgGeV~ 169 (378)
..-+ |-++=++|.++++.. +...++.||--.+ .|++| +.+.+|++||++ ++.+ +. +
T Consensus 165 ~~~S---Sq~vsslL~~a~l~~-~~~~~~~~~~~~s-~~yid----~T~~mL~~FGv~---v~~~-----------~~-~ 220 (428)
T COG0128 165 GPVS---SQQVSSLLLLAPLLA-EGTTIIVGGVLES-KPYID----HTLDMLKAFGVE---VENE-----------GY-R 220 (428)
T ss_pred ccch---HHHHHHHHHHHhhcC-CCcEEEecCccCC-ccHHH----HHHHHHHHcCCe---EEee-----------cc-E
Confidence 6433 667888888888887 4455555543332 34444 677899999998 7766 11 5
Q ss_pred EEEecCCCccceEeeecCce
Q 017072 170 LTIPIVDRLMAVRWLDEGMV 189 (378)
Q Consensus 170 ~~~~p~~~l~~i~l~~~g~i 189 (378)
+.++|-.++.|-++.-+|..
T Consensus 221 ~~i~~g~~~~~~~~~VpgD~ 240 (428)
T COG0128 221 FYIPGGQKLTPGDYDVPGDY 240 (428)
T ss_pred EEECCCccccCceEEcCCCh
Confidence 66666444666666655543
No 32
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=70.84 E-value=49 Score=33.67 Aligned_cols=116 Identities=23% Similarity=0.323 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccce--EEEEeCCcccCCceEEEecC
Q 017072 14 QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT--ELEYKPGIVMGGRNLVHDCG 91 (378)
Q Consensus 14 q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt--~l~F~Pg~i~~g~~~~~d~~ 91 (378)
-.+|.-+++.+....++.+.-=-.=+.+| ...|+..|+.+ |..+....+.. -+...+ ..++. ++++..
T Consensus 93 t~lr~L~~~~~~~~~~~~~~G~~~l~~RP--~~~l~~~L~~l-----Ga~i~~~~~~~~~pi~i~~--~~~~~-~~i~~~ 162 (419)
T PF00275_consen 93 TTLRFLLALLALAPGPVTFTGDCSLGKRP--MDPLLDALRQL-----GARISYLNGEGFLPIRIRG--LKGGP-IEIDGD 162 (419)
T ss_dssp HHHHHHHHHHSEESSEEEEECSBTGGGST--CHHHHHHHHHT-----TEEEEEETTEEEEEECEEE--SSSBE-EEEETS
T ss_pred hHHhHHHHHHheeeEEEEEeccchhhhCC--HHHHHHHHhhC-----CCEEEEecCCceEEEEEee--cccCc-EEEecc
Confidence 67899888888877788886411111122 24455555444 34444443322 344445 66676 887764
Q ss_pred CCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 92 VSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 92 tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
- | |-++=.+|.++++.... ++++++ . .+-.|+. .++.+|++||++ ++.
T Consensus 163 ~--s-Sq~vs~lll~A~~~a~g-~i~i~~---~---~s~p~i~-~t~~~L~~~G~~---i~~ 210 (419)
T PF00275_consen 163 I--S-SQFVSALLLAAALLARG-EITIIN---P---ASEPYID-MTIDMLKKFGAK---IEV 210 (419)
T ss_dssp S--S-HHHHHHHHHHHHTTSBS-EEEEES---E---SSSHHHH-HHHHHHHHTT-E---EEE
T ss_pred C--C-CHHHHHHHHHHHHhcCC-ceEEeC---C---CCCCcHH-HHHHHHhhceEE---EEE
Confidence 3 2 44555666666644333 888888 2 2233443 578899999997 654
No 33
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=69.35 E-value=1.1e+02 Score=30.82 Aligned_cols=113 Identities=13% Similarity=0.199 Sum_probs=61.5
Q ss_pred EEEe--ChHHH-HHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCc-ccCC
Q 017072 8 KRLK--GSQSL-RQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGI-VMGG 83 (378)
Q Consensus 8 i~~d--G~q~l-R~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~-i~~g 83 (378)
+.+| .+|.. |.-++. ++...+++|.|+-. ++.-...+++|.++ |..++. .+...+...|+. ..++
T Consensus 158 ~~l~~~ss~~~~~ll~aa-~~~~g~~~i~~~~~-------~~~i~~~~~~L~~~--G~~v~~-~~~~~i~I~g~~~~~~~ 226 (417)
T PRK09369 158 IVLDFPSVGATENILMAA-VLAEGTTVIENAAR-------EPEIVDLANFLNKM--GAKISG-AGTDTITIEGVERLHGA 226 (417)
T ss_pred EeCCCCCHHHHHHHHHHH-HhCCCcEEEeCCCc-------CCcHHHHHHHHHHC--CCEEEE-cCCceEEEcCCCccCCc
Confidence 4555 33555 665554 67788999976421 22222457777776 333432 233567777653 6666
Q ss_pred ceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 84 RNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 84 ~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
+ |.... ...+.+++ +..++.++.+++ +.+ . +.+|++ .++-+|++||++
T Consensus 227 ~-~~v~~-D~s~as~l----l~aa~l~~g~v~--i~~---~----~~~~~~-~~~~~L~~~G~~ 274 (417)
T PRK09369 227 E-HTVIP-DRIEAGTF----LVAAAITGGDVT--IRG---A----RPEHLE-AVLAKLREAGAE 274 (417)
T ss_pred e-EEecC-CHHHHHHH----HHHHHHcCCceE--Eec---C----ChhHHH-HHHHHHHHcCCE
Confidence 6 65432 22233433 233333455554 432 2 234554 688999999997
No 34
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=67.52 E-value=81 Score=34.44 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeec-cc-eEEEEeCCccc-CCceEEEe
Q 017072 13 SQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINE-TG-TELEYKPGIVM-GGRNLVHD 89 (378)
Q Consensus 13 ~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~-~g-t~l~F~Pg~i~-~g~~~~~d 89 (378)
+| +|.-+++.++.+.+++|+.-..=+ .+-..+ | ++.|.++ |..+.... .+ ..++..++.+. +++ |+++
T Consensus 97 tt-~r~Ll~~~al~~g~~~i~g~~~L~-~RP~~~-L---l~~L~~l--Ga~v~~~~~~g~~pi~I~g~~l~~g~~-i~i~ 167 (661)
T PRK11860 97 TA-MRPLTAALALLGGEYELSGVPRMH-ERPIGD-L---VDALRQL--GCDIDYLGNEGFPPLRIGPAPLRLDAP-IRVR 167 (661)
T ss_pred HH-HHHHHHHHHcCCCeEEEECCchhh-cCChHH-H---HHHHHHC--CCEEEEcCCCCcccEEEECCCcCCCce-EEEc
Confidence 35 588777888888899888633311 111222 2 4455443 33333221 22 34566677776 777 8876
Q ss_pred cCCCchhHHHHHHHHHhhhcCC-CCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 90 CGVSRSIGYFLEPLILVGLFAK-KPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 90 ~~tagSi~l~lq~lLp~l~f~~-~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
..- | +-+.=++|..+++.. .+ +++++..+.. +-.|+. .++.+|++||++
T Consensus 168 gd~--S-Sq~~SalLlAA~~~~g~~--~~I~~~~~~~---s~~~i~-~t~~~L~~~G~~ 217 (661)
T PRK11860 168 GDV--S-SQFLTALLMALPLVARRD--ITIEVVGELI---SKPYIE-ITLNLLARFGIA 217 (661)
T ss_pred CCC--c-HHHHHHHHHHHHhCCCCC--eEEEeCCCCC---CCCHHH-HHHHHHHHCCCE
Confidence 532 1 223337777777776 44 4555544322 223443 578899999997
No 35
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=62.01 E-value=63 Score=32.87 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=69.9
Q ss_pred EEEeCh-HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeC--CcccCC-
Q 017072 8 KRLKGS-QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKP--GIVMGG- 83 (378)
Q Consensus 8 i~~dG~-q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~P--g~i~~g- 83 (378)
|++.|+ .+---++.+|+|+.-+.+|+|+-.. ..=.+.++++.++-- .+...+..++.+.-.| +.....
T Consensus 11 v~~pgsKs~s~rali~AaLa~g~s~i~n~~~~-------~Dv~~~~~~l~~lG~-~i~~~~~~~~~~~~~g~~~~~~~~~ 82 (419)
T PF00275_consen 11 VRVPGSKSNSHRALIAAALAEGESRIRNVPDS-------DDVEATIDALRALGA-KISWDEENGDTVIISGNGGSFSSPE 82 (419)
T ss_dssp EE--B-HHHHHHHHHHHHHGBSEEEEES---S-------HHHHHHHHHHHHTT--EEEEEECTSEEEEEETTSTTCEESH
T ss_pred EEeCCccHHHHHHHHHHHHhcCCCeEEECCch-------HHHHHHHHhhcccCc-eeEEeeccceEEEeccccccccccc
Confidence 566674 4555577788888888999997653 333466777777642 3334445667777666 222222
Q ss_pred ceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 84 RNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 84 ~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
+ ..++|+.+|....+| ++++.. .+..+++.|+-.-..=| ++ -++-.|++||+.
T Consensus 83 ~-~~i~~g~Sgt~lr~L---~~~~~~--~~~~~~~~G~~~l~~RP-~~----~l~~~L~~lGa~ 135 (419)
T PF00275_consen 83 D-IVIDVGNSGTTLRFL---LALLAL--APGPVTFTGDCSLGKRP-MD----PLLDALRQLGAR 135 (419)
T ss_dssp H-HHEEECCGHHHHHHH---HHHHSE--ESSEEEEECSBTGGGST-CH----HHHHHHHHTTEE
T ss_pred c-cceeeccChhHHhHH---HHHHhe--eeEEEEEeccchhhhCC-HH----HHHHHHhhCCCE
Confidence 4 678898887666554 444333 34678899977654333 22 123357778886
No 36
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=55.02 E-value=98 Score=33.85 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeec-cc-eEEEEeCCcc-cCCceEEEe
Q 017072 13 SQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINE-TG-TELEYKPGIV-MGGRNLVHD 89 (378)
Q Consensus 13 ~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~-~g-t~l~F~Pg~i-~~g~~~~~d 89 (378)
||.+|.-+++.++...+++|+. .+.=+=||.. ..++.|.++ |..+.... .+ --++..++.+ .++. |+++
T Consensus 332 Gt~~r~L~~~~a~~~g~~~i~G----~~~L~~RPi~-~ll~~L~~l--Ga~v~~~~~~~~~p~~I~g~~~~~~~~-~~v~ 403 (673)
T PRK11861 332 GTAVRPLTAALAVNGGEYRIHG----VPRMHERPIG-DLVDGLRQI--GARIDYEGNEGFPPLRIRPATISVDAP-IRVR 403 (673)
T ss_pred chHHHHHHHHHHcCCCeEEEEC----ChhhccCChh-HHHHHHHHC--CCcEEeCCCCCCCCEEEECCCcCCCCe-EEeC
Confidence 5999988888888888998872 2111222221 124555543 33333221 12 2355566544 3445 6655
Q ss_pred cCCCchhHHHHHHHHHhhhcCC---CCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 90 CGVSRSIGYFLEPLILVGLFAK---KPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 90 ~~tagSi~l~lq~lLp~l~f~~---~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
..- | +-|+=++|..+++.. ....+.+.| +. .|-.|++ .++-+|++||++
T Consensus 404 g~~--S-sq~iSalLlaa~~l~a~~~~~~i~~~g--~~---~S~pyv~-~t~~~L~~fG~~ 455 (673)
T PRK11861 404 GDV--S-SQFLTALLMTLPLVKAKDGASVVEIDG--EL---ISKPYIE-ITIKLMARFGVT 455 (673)
T ss_pred CCc--c-HHHHHHHHHHhHhhccCCCCEEEEECC--cc---CCcCHHH-HHHHHHHHCCCE
Confidence 432 2 226666676666543 445566654 22 2333544 567789999998
No 37
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=54.67 E-value=1.3e+02 Score=29.95 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=63.7
Q ss_pred EEEeChHHHHHH-HHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceE
Q 017072 8 KRLKGSQSLRQR-LVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNL 86 (378)
Q Consensus 8 i~~dG~q~lR~a-laLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~ 86 (378)
|++.|+...=++ |+++++...+.+|+|.-. .+.=...++++.++ |..++... ...++..++... . +
T Consensus 5 i~~p~sKS~~~r~l~~a~la~g~~~i~~~~~-------~~dv~~~~~~L~~l--G~~i~~~~-~~~~~I~~~~~~--~-~ 71 (400)
T cd01555 5 VRISGAKNAALPILAAALLTDEPVTLRNVPD-------LLDVETMIELLRSL--GAKVEFEG-ENTLVIDASNIN--S-T 71 (400)
T ss_pred EEcCCcHHHHHHHHHHHHhCCCcEEEECCCC-------hHHHHHHHHHHHHc--CCEEEECC-CCEEEEECCCCC--C-C
Confidence 667787444444 778889999999976432 33444677777776 43443222 134544433221 1 2
Q ss_pred EEecCCCchhHHHHHHHHHhhhcCC--CCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 87 VHDCGVSRSIGYFLEPLILVGLFAK--KPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 87 ~~d~~tagSi~l~lq~lLp~l~f~~--~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
..+- .-.+-+.-+++.+++.+. ....++++|+-+...-| ++ .++-.|++||++
T Consensus 72 ~~~~---~~~~~~~t~~~~~~~l~~~~~~~~~~~~g~~~l~~rp-~~----~~~~~L~~lG~~ 126 (400)
T cd01555 72 EAPY---ELVRKMRASILVLGPLLARFGEARVSLPGGCAIGARP-VD----LHLKGLEALGAK 126 (400)
T ss_pred cCCH---HHHhhhhhHHHHHHHHhcCCCceEEEEcCCCccccCC-HH----HHHHHHHHCCCE
Confidence 2111 111112222222333332 34678888865555333 43 567889999997
No 38
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=52.43 E-value=41 Score=33.88 Aligned_cols=61 Identities=25% Similarity=0.473 Sum_probs=43.1
Q ss_pred EEEEeCCcccCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 72 ~l~F~Pg~i~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
.++..||....|+ ++ ++.+.|. .+.+|.++++++.+++|+ | .|..+++ ...+-.|++||+.
T Consensus 3 ~~~v~~~~~~~g~-i~--~p~skS~---~~r~l~~a~la~g~~~i~-----~---~~~~~d~-~~~~~~l~~lG~~ 63 (416)
T TIGR01072 3 KLVVEGGKPLSGE-VT--ISGAKNA---ALPIIAATLLTDEPVTLT-----N---VPDLSDV-KTTLDLLRNLGAR 63 (416)
T ss_pred eEEEeCCCCcEEE-EE--cCCcHHH---HHHHHHHHHhCCCcEEEe-----C---CCchHHH-HHHHHHHHHCCCE
Confidence 4566787666776 55 4334444 478899999999888666 3 3456665 4788899999986
No 39
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=48.08 E-value=51 Score=33.28 Aligned_cols=61 Identities=16% Similarity=0.336 Sum_probs=43.6
Q ss_pred EEEEeCCcccCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 72 ELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 72 ~l~F~Pg~i~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
.++..||....|+ ++. .||.++ ...+|..+++++.+++| +|. |+.+|++ +++-.|++||+.
T Consensus 3 ~~~i~~~~~~~G~-v~v----pgsKSs-~~~ll~aa~la~g~s~i-----~n~---~~~~dv~-~t~~~l~~lG~~ 63 (417)
T PRK12830 3 KIVINGGKPLSGE-VTI----SGAKNS-AVALIPAAILADGPVTL-----DGV---PDISDVH-SLVDILEELGGK 63 (417)
T ss_pred eEEEeCCCcceEE-EEc----cCcHHH-HHHHHHHHHhcCCeEEE-----eCC---CCcHHHH-HHHHHHHHCCCE
Confidence 3555777666776 553 345554 57888888899988865 444 6677766 678899999987
No 40
>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane]
Probab=37.33 E-value=3.4e+02 Score=28.07 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEecCC-Cchh
Q 017072 18 QRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGV-SRSI 96 (378)
Q Consensus 18 ~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d~~t-agSi 96 (378)
+=+.++++||--|.|.|++ ++|+.. +++++... =+++.+....+++.+..-...- ..+++.+ .|=.
T Consensus 239 T~~~aaA~tgg~v~i~~v~---------~~hl~~--~~~kL~e~-G~~~~~~~~~i~v~~~~~~~k~-v~i~T~p~PGFp 305 (421)
T COG0766 239 TFLVAAAITGGDVTIENVR---------PEHLEA--VLAKLREA-GVDIEEGEDGIRVDMEGKRLKA-VDIKTLPYPGFP 305 (421)
T ss_pred HHHHHHHHhCCcEEEeCCC---------HHHHHH--HHHHHHHh-CCeEEEcCCeEEEeccCCCCCc-ceeccCCCCCCc
Confidence 4478899999999999976 678765 34455432 1233445555666654222222 3444443 4555
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 97 GYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 97 ~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
|-+=|.+.+++.-++..+.++= ++--=|..+.|=|.|||.+ +++
T Consensus 306 TDmQaqf~~L~~~a~G~s~I~E----------tifEnRf~hv~EL~RmGA~---i~~ 349 (421)
T COG0766 306 TDMQAQFMALLTVAEGTSVITE----------TIFENRFMHVPELIRMGAN---IKL 349 (421)
T ss_pred hhHHHHHHHHHhhcCCceEEEE----------eechhhhhhHHHHHhCCCc---eEE
Confidence 5555555666666676665431 1222366778889999998 777
No 41
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=33.86 E-value=57 Score=34.41 Aligned_cols=70 Identities=26% Similarity=0.313 Sum_probs=49.7
Q ss_pred ecCCCchhH-HHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCCCCCCc
Q 017072 89 DCGVSRSIG-YFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGG 166 (378)
Q Consensus 89 d~~tagSi~-l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~P~GgG 166 (378)
.+.++|+|+ -|+-++|++++.+..++++.+-||--.+ .|-+| ..+.++.+||++ ++-.-..--||=.+||
T Consensus 263 ~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS-~pyv~----mt~~lme~fgvn---~~~s~~~~~~y~i~g~ 333 (595)
T KOG0692|consen 263 KVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLIS-VPYVE----MTLKLMERFGVN---VEHSTSWDRFYVIGGQ 333 (595)
T ss_pred eeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCcccc-ccchh----HHHHHHHHhCcC---eEecCCCcceEeccCc
Confidence 355678774 6888999999999999999999886654 34444 567899999998 6643333334433443
No 42
>PLN00218 predicted protein; Provisional
Probab=25.40 E-value=53 Score=27.38 Aligned_cols=22 Identities=23% Similarity=0.049 Sum_probs=19.6
Q ss_pred CCCchhHHHHHHHHHhhhcCCC
Q 017072 91 GVSRSIGYFLEPLILVGLFAKK 112 (378)
Q Consensus 91 ~tagSi~l~lq~lLp~l~f~~~ 112 (378)
++-|||+|+|..+||.+-|+.-
T Consensus 57 pplgsislilnvllpalgfcgf 78 (151)
T PLN00218 57 PPLGSISLILNVLLPALGFCGF 78 (151)
T ss_pred CCcchHHHHHHHHHHhhccccc
Confidence 4679999999999999999875
Done!