Query 017072
Match_columns 378
No_of_seqs 130 out of 558
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pqv_A RCL1 protein; RTC-like, 100.0 2E-109 8E-114 820.3 38.8 360 1-378 2-365 (365)
2 3tut_A RNA 3'-terminal phospha 100.0 1.8E-98 6E-103 736.8 37.1 328 6-365 23-357 (358)
3 2pqc_A 3-phosphoshikimate 1-ca 91.8 2.7 9.1E-05 41.9 14.3 114 15-154 97-212 (445)
4 3rmt_A 3-phosphoshikimate 1-ca 91.1 1.7 6E-05 43.6 12.1 129 14-183 98-231 (455)
5 1rf6_A 5-enolpyruvylshikimate- 90.5 1.7 5.9E-05 43.1 11.3 113 15-153 94-209 (427)
6 3nvs_A 3-phosphoshikimate 1-ca 90.3 3.6 0.00012 41.1 13.6 119 8-147 40-163 (450)
7 3slh_A 3-phosphoshikimate 1-ca 89.4 3.3 0.00011 41.3 12.4 129 8-162 18-150 (441)
8 3rmt_A 3-phosphoshikimate 1-ca 88.9 3.6 0.00012 41.4 12.3 116 19-153 243-366 (455)
9 3r38_A UDP-N-acetylglucosamine 88.4 2.2 7.7E-05 42.7 10.3 81 46-147 149-229 (454)
10 2yvw_A UDP-N-acetylglucosamine 87.3 5.4 0.00018 39.4 12.3 109 18-152 105-214 (425)
11 1ejd_A MURA, EPT, UDP-N-acetyl 87.3 3.2 0.00011 41.0 10.6 78 52-147 126-204 (419)
12 1rf6_A 5-enolpyruvylshikimate- 86.6 8 0.00027 38.2 13.1 117 8-147 14-135 (427)
13 2o0b_A 3-phosphoshikimate 1-ca 86.1 5.1 0.00017 40.1 11.4 115 14-147 97-213 (450)
14 2pqc_A 3-phosphoshikimate 1-ca 85.3 3.3 0.00011 41.2 9.5 112 20-152 247-368 (445)
15 3slh_A 3-phosphoshikimate 1-ca 85.2 7.5 0.00025 38.7 12.1 83 46-152 129-212 (441)
16 3nvs_A 3-phosphoshikimate 1-ca 85.1 6.8 0.00023 39.1 11.8 108 20-147 275-383 (450)
17 2o0b_A 3-phosphoshikimate 1-ca 82.2 14 0.00049 36.8 12.7 115 8-147 17-139 (450)
18 4fqd_A NIKO protein; beta/alph 75.9 15 0.00052 36.9 10.7 109 20-153 272-384 (479)
19 1ejd_A MURA, EPT, UDP-N-acetyl 72.8 24 0.00081 34.6 11.1 106 19-153 238-347 (419)
20 2yvw_A UDP-N-acetylglucosamine 59.4 30 0.001 34.0 8.7 107 20-153 246-353 (425)
21 4fqd_A NIKO protein; beta/alph 51.4 36 0.0012 34.1 7.9 89 46-153 142-237 (479)
22 3r38_A UDP-N-acetylglucosamine 51.3 1E+02 0.0035 30.4 11.2 116 8-153 181-300 (454)
23 1n8f_A DAHP synthetase; (beta/ 28.1 43 0.0015 32.4 3.8 138 5-147 52-259 (350)
No 1
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis}
Probab=100.00 E-value=2.4e-109 Score=820.27 Aligned_cols=360 Identities=35% Similarity=0.626 Sum_probs=335.9
Q ss_pred CCCCcceEEEeChHHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcc
Q 017072 1 MGKKTSYKRLKGSQSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIV 80 (378)
Q Consensus 1 ~~~~~~~i~~dG~q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i 80 (378)
|+..+++++|+|||+||+||+||+||||||+|+|||++|+||||++||+++|+|++++|||++++++++||+|+|.||.+
T Consensus 2 ~~~~~~~~~f~GgQilR~alaLS~ltgkpvrI~nIRa~r~~PGL~~qhls~l~ll~~itng~v~g~~~gst~l~F~Pg~i 81 (365)
T 3pqv_A 2 MSSSSRYVTFEGSRNFRLRVVMATLSGKAIKIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPGII 81 (365)
T ss_dssp ----CCCEEEESSTTHHHHHHHHHHHCCCEEEESSSTTSSSCSCCHHHHHHHHHHHHHEESCEEEECTTSSCEEEECCEE
T ss_pred CCCCCCeEEEeChhHHHHHHHHHHhhCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhCceEeeeecCCcEEEEECCcc
Confidence 66556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCC
Q 017072 81 MGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGS 160 (378)
Q Consensus 81 ~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~ 160 (378)
++|+ |+|||+|||||+|+||++||+++|++.|++|+|+||||++||||+||+++||+|+|++||++ ++++++.||||
T Consensus 82 ~gG~-~~~d~~tagSi~l~l~~lL~~a~f~~~p~~l~l~GgTn~~~sPsvDy~~~v~lP~l~~fG~~--~~~l~i~rRG~ 158 (365)
T 3pqv_A 82 TGGS-YTHQCPNSKPVGYFAEPMLYLAPFSKKKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVR--ECALHTLKRGS 158 (365)
T ss_dssp CCEE-EEEECCTTSCHHHHHGGGGGTGGGSSSCEEEEEEECCCCSSSCCHHHHHHTTHHHHHHTTCC--SCEEEEEECCC
T ss_pred cCCe-EEEECCCCcchHHHHHHHHHHHhcCCCcEEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEEEecCC
Confidence 9999 99999999999999999999999999999999999999999999999999999999999995 69999999999
Q ss_pred CCCCCcEEEEEEecC-CCccceEeeecCceeEEEEEEEecccchhHHHHHHHHHHHHhhhcCCceeEEeeccCCCCCCCC
Q 017072 161 PPDGGGEVILTIPIV-DRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGKS 239 (378)
Q Consensus 161 ~P~GgGeV~~~~~p~-~~l~~i~l~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~~L~~~~~~v~I~~d~~~~~~~~~~ 239 (378)
||+|||||+++|.|+ ++++|++|+++|++++|||++|++++|+++++||+++|++.|+++.+|++|++|+.++.+++.+
T Consensus 159 ~P~GGGeV~~~v~p~~~~l~~i~l~~~G~i~~IrG~a~~~~v~~~~a~R~~~~a~~~L~~~~~dv~I~~d~~~~~~~~~s 238 (365)
T 3pqv_A 159 PPLGGGEVHLVVDSLIAQPITMHALDKTMISSIRGVSYSTRVSPSLVNRMIDGAKKVLKSASCEVNITADVWRGENSGKS 238 (365)
T ss_dssp TTTCCEEEEEEECCCCSSCCCCEECSCCCCCEEEEEEEEESSCTHHHHHHHHHHHHHSTTCSSEECCEEEEECSGGGCSS
T ss_pred CCCCCeEEEEEEeCccccCCcceeecCCceEEEEEEEEecCCCHHHHHHHHHHHHHHHhhcCCCccEEEeeccccccCCC
Confidence 999999999999875 6799999999999999999999999999999999999999999999999999998887777899
Q ss_pred CceEEEEEEEecCceEEeEecccccCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcCCCCCcCChhHHHHHHhhc
Q 017072 240 PGYGISLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCALS 319 (378)
Q Consensus 240 ~G~~i~L~aet~~g~~~~~d~~~~~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa 319 (378)
||+||+|||||++||+|++|+++++| ++||+||++||++|++||++|||||+||||||++|||||
T Consensus 239 pG~gi~L~Aet~~g~~~~~~~lg~~g---------------~~aE~vg~~aa~~Ll~~i~~gg~VD~~lqdqli~~mALa 303 (365)
T 3pqv_A 239 PGWGLTLVAENKQGWRIFSEAIGDAG---------------DVPEDIGASVAYHLLEEISKSGVVGRNQLPLTILYMIIG 303 (365)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECTT---------------CCHHHHHHHHHHHHHHHHHTCSSSCGGGHHHHHHHHHTS
T ss_pred CceEEEEEEEECCCEEEEEehhccCC---------------CCHHHHHHHHHHHHHHHHHcCCccchhhHHHHHHHHHhC
Confidence 99999999999999999999999887 899999999999999999999999999999999999999
Q ss_pred CCCcceEEec--CCCHHHHHHHHHHHhhcCcEEEEeeCC-CCCeEEEEEEeeeccccccccC
Q 017072 320 EPDVSKVRVG--KLSPYGIEMLRNIFDFLDIRFDIMPDP-STGTVILRCVGCGYKNLSRKLS 378 (378)
Q Consensus 320 ~~~~S~i~~g--~lT~h~~t~l~v~~~f~~v~f~i~~~~-~~~~~~i~c~G~G~~n~~~~~~ 378 (378)
++++|++++| .+|++++..++.+++|||++|++++.+ ++++++++|+|+||+|.+||++
T Consensus 304 ~~~vs~i~~g~~~lt~~~i~~lr~l~~~fgv~f~i~~~~~~~~~~ii~c~G~G~~N~~~~~~ 365 (365)
T 3pqv_A 304 KEDIGRLRITKDQIDERFVWLLRDIKKVFGTEILLKPVDDNTTDLIATIKGIGFTNTNKKIA 365 (365)
T ss_dssp SSSEEEEEECGGGCSHHHHHHHHHHHHHHCCCCEEEECSSSSSCEEEEEECCCC--------
T ss_pred CCCcceEEeCCCCCCHHHHHHHHHHHHhhCcEEEEEecCCCCCeEEEEEEEEeccccccccC
Confidence 9889999999 479999999999999999999998753 3578999999999999999975
No 2
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=100.00 E-value=1.8e-98 Score=736.81 Aligned_cols=328 Identities=23% Similarity=0.340 Sum_probs=304.8
Q ss_pred ceEEEeCh------HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccc-eEEEEeCC
Q 017072 6 SYKRLKGS------QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETG-TELEYKPG 78 (378)
Q Consensus 6 ~~i~~dG~------q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~g-t~l~F~Pg 78 (378)
+||++||+ |+||+||+||+||||||+|+|||++|+||||++||+++|++++++|+| .+++++.| |+|+|.||
T Consensus 23 ~~i~iDGs~~EGGGQ~lR~alaLS~Ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~a-~veg~~~GSt~l~f~PG 101 (358)
T 3tut_A 23 RMIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGA-TVEGAELGSQRLLFRPG 101 (358)
T ss_dssp CCEEEETTSTTCSTHHHHHHHHHHHHHCCCEEEESTTTTSSSCSCCHHHHHHHHHHHHHHTC-EEECCSTTCSCEEEECC
T ss_pred ccEEEeCCcccCchHHHHHHHHHHHhhCCCEEEEEecCCCCCccccHHHHHHHHHHHHhhCC-EEEEeecCcEEEEEECC
Confidence 48999975 999999999999999999999999999999999999999999999976 66666665 79999999
Q ss_pred cccCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEee
Q 017072 79 IVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESR 158 (378)
Q Consensus 79 ~i~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~kr 158 (378)
.+++|+ |+|||+|||||+||||++||+++|+++|++|+|+||||++||||+||+++|++|+|++||++ +++++.||
T Consensus 102 ~i~gg~-~~~d~~tagSi~l~lq~lLp~~lFa~~p~~l~l~GgTn~~~~psvDy~~~v~lP~l~~fG~~---~~l~i~rR 177 (358)
T 3tut_A 102 TVRGGD-YRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIH---QQTTLLRH 177 (358)
T ss_dssp CCCCCE-EEEECSSSCBHHHHHHHHHHHHTTSSSCEEEEEEEBSCCTTSCCHHHHHHTHHHHHHHHTCC---EEEEEEEC
T ss_pred CccCce-EEEECCCcccHHHHHHHHHHHHHhCCCCEEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCc---EEEEEEec
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCCCCcEEEEEEecCCCccceEeeecCceeEEEEEEEecccchhHHHHHHHHHHHHhhhcCCceeEEeeccCCCCCCC
Q 017072 159 GSPPDGGGEVILTIPIVDRLMAVRWLDEGMVKRIRGVSFSTRVSSQFENSMIHAARGIFNRLLPDVHIFTDHRAGPQAGK 238 (378)
Q Consensus 159 G~~P~GgGeV~~~~~p~~~l~~i~l~~~g~i~~Irg~~~~~~l~~~ia~r~~~~a~~~L~~~~~~v~I~~d~~~~~~~~~ 238 (378)
||||+|||||.|+|+|+++|+|++|+++|+|++|||++|++++|+++++||+++|++.+ +++++..+..+ ++.
T Consensus 178 G~~P~GGGeV~~~v~pv~~l~~i~l~~~G~i~rIrG~a~~~~v~~~va~R~~~~ar~~~----~~~~~~~~~~~---~~~ 250 (358)
T 3tut_A 178 GFYPAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSF----SLHEQNIHNLP---RDQ 250 (358)
T ss_dssp CCTTTCCEEEEEEECCCSCCCCCBCCBCCCEEEEEEEEEEESSCHHHHHHHHHHHBTTB----CEEEEEEEEEC---GGG
T ss_pred cccCCCCeEEEEEEecCCCcccceeecCCCceEEEEEEEEcCCChHHHHHHHHHHHhcC----Ccceeeeeecc---CCC
Confidence 99999999999999999999999999999999999999999999999999999999843 56677666543 347
Q ss_pred CCceEEEEEEEecCceEEeEecccccCCCCcchhhhhhccCCCChhhHHHHHHHHHHHHHHcCCCCCcCChhHHHHHHhh
Q 017072 239 SPGYGISLVAETTSGCFISVDTAVSYARGEVDEIEYDEKRELMPPDNVGEQIASCLLEEIAKGGVVDSTHQGLLFLLCAL 318 (378)
Q Consensus 239 ~~G~~i~L~aet~~g~~~~~d~~~~~g~~~~~~~~~~~~~~~~~aE~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mAL 318 (378)
+||++++||||+++++ .++++++++| ++||+||++||++|+++|++|||||+||||||++||||
T Consensus 251 spG~gi~L~ae~~~~~-~~~~alG~~G---------------~~aE~VG~~aA~~Ll~~l~~gg~VD~~l~Dqlil~mAL 314 (358)
T 3tut_A 251 GPGNTVSLEVESENIT-ERFFVVGEKR---------------VSAEVVAAQLVKEVKRYLASTAAVGEYLADQLVLPMAL 314 (358)
T ss_dssp CSEEEEEEEEEESSCE-EEEEEECCTT---------------CCHHHHHHHHHHHHHHHHTSCBSBCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEEeeee-EEEEeeCCCC---------------CCHHHHHHHHHHHHHHHHHcCCccchhhHHHHHHHHHh
Confidence 9999999999999987 4677788777 89999999999999999999999999999999999999
Q ss_pred cCCCcceEEecCCCHHHHHHHHHHHhhcCcEEEEeeCCCCCeEEEEE
Q 017072 319 SEPDVSKVRVGKLSPYGIEMLRNIFDFLDIRFDIMPDPSTGTVILRC 365 (378)
Q Consensus 319 a~~~~S~i~~g~lT~h~~t~l~v~~~f~~v~f~i~~~~~~~~~~i~c 365 (378)
|+ .|+|+++++|+|++|++|++|+||+++|++++.++ ...|++
T Consensus 315 a~--~s~i~~~~lT~Ht~T~i~vie~fl~v~f~i~~~~~--~~~v~~ 357 (358)
T 3tut_A 315 AG--AGEFTVAHPSSNLLTNIAVVERFLPVRFSLIETDG--VTRVSI 357 (358)
T ss_dssp HT--CCEEEESSCCHHHHHHHHHHHHHSSCCEEEEEETT--EEEEEE
T ss_pred CC--CCeEEEcCCCHHHHHHHHHHHHhcCCEEEEEecCC--ceEEEe
Confidence 96 38899999999999999999999999999998642 444443
No 3
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=91.83 E-value=2.7 Score=41.86 Aligned_cols=114 Identities=12% Similarity=0.054 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccce-EEEEeCC-cccCCceEEEecCC
Q 017072 15 SLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGT-ELEYKPG-IVMGGRNLVHDCGV 92 (378)
Q Consensus 15 ~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt-~l~F~Pg-~i~~g~~~~~d~~t 92 (378)
.+|.-+++.+..+-.+.+.+--..+.+| ...|+..|+.+ |..++...++. =++..++ .+++++ +.++
T Consensus 97 ~~r~l~~~l~~~~~~v~l~G~~~l~~Rp--~~~~l~~L~~~-----Ga~i~~~~~g~~Pi~i~~~~~l~g~~-i~~~--- 165 (445)
T 2pqc_A 97 GCRLTMGLVGVYDFDSTFIGDASLTKRP--MGRVLNPLREM-----GVQVKSEDGDRLPVTLRGPKTPTPIT-YRVP--- 165 (445)
T ss_dssp HHHHHHHHHHTSSSEEEEECCTTGGGSC--CHHHHHHHHHT-----TCEEEEETTTEEEEEEECCSSCCCCE-EECS---
T ss_pred HHHHHHHHHhcCCcEEEEECCccCCCCC--hHHHHHHHHHC-----CCEEEeccCCcccEEEeCCCCCCCeE-EEeC---
Confidence 6666666665444577777653323333 23565555543 44555544341 1555553 678887 7653
Q ss_pred CchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEE
Q 017072 93 SRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELK 154 (378)
Q Consensus 93 agSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~ 154 (378)
+.-+-+..+++..+++++..++|+-. .++-||+. ..|++||++ ++.+
T Consensus 166 -~~ssq~~~~lllaa~~a~G~t~I~~~-------~~~~~~~~----~~L~~~Ga~---I~~~ 212 (445)
T 2pqc_A 166 -MASAQVKSAVLLAGLNTPGITTVIEP-------IMTRDHTE----KMLQGFGAN---LTVE 212 (445)
T ss_dssp -SSCHHHHHHHHHHHHTSSSEEEEEES-------SCCCCHHH----HHHHHTTCC---EEEE
T ss_pred -CCCHHHHHHHHHHHhhCCCceEEEEc-------cCCHHHHH----HHHHHCCCE---EEEe
Confidence 44467889999999999998866432 34445554 889999998 7654
No 4
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=91.11 E-value=1.7 Score=43.64 Aligned_cols=129 Identities=22% Similarity=0.285 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhhcCCcEEEeEeeCCC---CCCCChHHHHHHHHHHHHHccceeeeeeccce--EEEEeCCcccCCceEEE
Q 017072 14 QSLRQRLVLSTLASTPVLIDDIRADD---TMPGLRPHEISLLRLLERICDDCVVEINETGT--ELEYKPGIVMGGRNLVH 88 (378)
Q Consensus 14 q~lR~alaLS~ltgkpi~I~nIR~~r---~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt--~l~F~Pg~i~~g~~~~~ 88 (378)
.-+| +.+..+..++.++. +-++. .+| ...|+.+|+.+ |..+....++. =++...+.+++++ |.+
T Consensus 98 t~mR--ll~g~la~~~~~~~-l~G~~~l~~RP--i~~~~~~L~~l-----Ga~i~~~~~~~~~Pl~i~g~~l~g~~-i~l 166 (455)
T 3rmt_A 98 TTTR--LILGILSTLPFHSV-IIGDESIGKRP--MKRVTEPLKSM-----GAQIDGRDHGNLTPLSIRGGQLKGID-FHS 166 (455)
T ss_dssp HHHH--HHHHHHTTSSSEEE-EECCTTGGGSC--CHHHHHHHHHT-----TCEEEEHHHHTEEEEEEECCSCBCCE-EEC
T ss_pred ccHH--HHHHHHHcCCcEEE-EeCCcccccCC--HHHHHHHHHHC-----CCEEEEecCCCcccEEEEeCCccceE-EEE
Confidence 3567 55555556655443 33331 222 25776666654 44555444332 2566777899999 998
Q ss_pred ecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCCCCCCcEE
Q 017072 89 DCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPPDGGGEV 168 (378)
Q Consensus 89 d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~P~GgGeV 168 (378)
+..+ +-+...+|..+++++..+.| ++ . -++-|| +..+|++||++ ++.. | .
T Consensus 167 ~~~S----sq~~s~lLlAa~~a~G~t~i--~e---p--~~s~~~----t~~~L~~~Ga~---i~~~----g------~-- 216 (455)
T 3rmt_A 167 PVAS----AQMKSAILLAGLRAEGKTSV--TE---P--AKTRDH----TERMLEAFGVN---IEKD----G------L-- 216 (455)
T ss_dssp SSCC----HHHHHHHHHHHHTSBSCEEE--EC---S--SCCCCH----HHHHHHHTTCC---EEEE----T------T--
T ss_pred ccCc----HHHHHHHHHHHHhcCCCEEE--EC---C--cCcHHH----HHHHHHHCCCC---EEec----C------C--
Confidence 8543 55677888888999988765 21 1 223344 66899999998 7632 1 1
Q ss_pred EEEEecCCCccceEe
Q 017072 169 ILTIPIVDRLMAVRW 183 (378)
Q Consensus 169 ~~~~~p~~~l~~i~l 183 (378)
.+++++..++++.++
T Consensus 217 ~i~I~g~~~l~~~~~ 231 (455)
T 3rmt_A 217 TVSIEGGQMLTGQHV 231 (455)
T ss_dssp EEEECSCCCCBCCEE
T ss_pred EEEEcCCccccCCee
Confidence 355666555655444
No 5
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=90.53 E-value=1.7 Score=43.11 Aligned_cols=113 Identities=17% Similarity=0.070 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeee-ccc-eEEEEeCC-cccCCceEEEecC
Q 017072 15 SLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEIN-ETG-TELEYKPG-IVMGGRNLVHDCG 91 (378)
Q Consensus 15 ~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~-~~g-t~l~F~Pg-~i~~g~~~~~d~~ 91 (378)
.+|..+++.+..+-.+.+.+.-.-+.+| ...|+..|+.+ |..++.. ..+ .-++..++ .+++++ +.++.-
T Consensus 94 ~~rll~a~la~~~~~v~l~G~~~l~~Rp--i~~~l~~L~~m-----Ga~i~~~~~~g~~pi~i~~~~~L~g~~-i~~~~~ 165 (427)
T 1rf6_A 94 SIRLISGVLAGADFEVEMFGDDSLSKRP--MDRVTLPLKKM-----GVSISGQTERDLPPLRLKGTKNLRPIH-YELPIA 165 (427)
T ss_dssp HHHHHHHHGGGCSSEEEEECCTTGGGSC--CHHHHHHHHHT-----TCEEEEETTTTEEEEEEECCTTCCCCE-EECSSC
T ss_pred HHHHHHHHHhcCCcEEEEeCCCccCCCC--HHHHHHHHHHC-----CCEEEEEcCCCcceEEEeccCCCCceE-EEeCCC
Confidence 6665555554333355554432212222 23566665554 4455554 233 23666664 688888 776521
Q ss_pred CCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 92 VSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 92 tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
| +-+...++..+++++..++|+.. .++-+|+. ..|++||++ ++.
T Consensus 166 ---s-sq~~s~lllaA~~a~G~t~I~~~-------~~~~~~i~----~~L~~~Ga~---i~~ 209 (427)
T 1rf6_A 166 ---S-AQVKSALMFAALQAKGESVIIEK-------EYTRNHTE----DMLQQFGGH---LSV 209 (427)
T ss_dssp ---C-HHHHHHHHHHHTTSSEEEEEECS-------SCCCCHHH----HHHHHTTCC---CEE
T ss_pred ---C-HHHHHHHHHHHHhcCCCeEEEec-------cCCHHHHH----HHHHHCCCC---EEe
Confidence 1 37888999999999998765322 45556665 689999998 654
No 6
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=90.33 E-value=3.6 Score=41.11 Aligned_cols=119 Identities=18% Similarity=0.112 Sum_probs=73.1
Q ss_pred EEEeCh--HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCc--cc-C
Q 017072 8 KRLKGS--QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGI--VM-G 82 (378)
Q Consensus 8 i~~dG~--q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~--i~-~ 82 (378)
+++-|+ --+| +|++++|+.-+.+|+|+ |=.++-. ..+++|.++ |..++....++.++..+.. .. .
T Consensus 40 v~vpgsKs~s~r-~l~~aaLa~g~s~i~n~------~~~~D~~-~~~~~L~~l--G~~i~~~~~~~~~~i~g~~~~~~~~ 109 (450)
T 3nvs_A 40 VNLPGSKSVSNR-ALLLAALASGTTRLTNL------LDSDDIR-HMLNALTKL--GVNYRLSADKTTCEVEGLGQAFHTT 109 (450)
T ss_dssp EECCBCHHHHHH-HHHHHHHSBSEEEEESC------CCSHHHH-HHHHHHHHT--TCEEEECTTSSCEEEECCSSCCBCS
T ss_pred EEeCCcHHHHHH-HHHHHHHcCCCEEEcCC------CccHHHH-HHHHHHHHc--CCeEEEcCCccEEEEeCCCCCcCCC
Confidence 344454 3333 46888999999999874 3344433 677888876 3344433222246666542 22 2
Q ss_pred CceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 83 GRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 83 g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
.. +.+||+.+|+...+ ++|++.+ .+.+++|+|+-.-. ..|+|.+ +-.|++||+.
T Consensus 110 ~~-~~l~~g~sgt~~R~---l~~~la~--~~~~~~l~G~~~l~-~RPi~~~----l~~L~~lGa~ 163 (450)
T 3nvs_A 110 QP-LELFLGNAGTAMRP---LAAALCL--GQGDYVLTGEPRMK-ERPIGHL----VDALRQAGAQ 163 (450)
T ss_dssp SC-EEEECTTCHHHHHH---HHHHTTS--SBCEEEEECSGGGG-GSCCHHH----HHHHHHTTCE
T ss_pred CC-ceEEccCccchHHH---HHHHHhc--CCcEEEEeCCcccc-cCCHHHH----HHHHHHCCCE
Confidence 34 78999999888774 4444444 34577899875443 3444442 5678899997
No 7
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=89.39 E-value=3.3 Score=41.32 Aligned_cols=129 Identities=15% Similarity=0.177 Sum_probs=78.7
Q ss_pred EEEeChHH-HHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCc---ccCC
Q 017072 8 KRLKGSQS-LRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGI---VMGG 83 (378)
Q Consensus 8 i~~dG~q~-lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~---i~~g 83 (378)
+.+-|+.. --=+|++|+|+.-+.+|+|+=. . .-=.+.+++++++ |..++....+.++...+.. +...
T Consensus 18 v~vpgsKs~s~r~l~~aaLa~g~s~i~n~~~------~-~D~~~~~~~L~~l--G~~i~~~~~~~~~~i~~~~~~~~~~~ 88 (441)
T 3slh_A 18 ICVPGDKSISHRAVLLAAIAEGQTQVDGFLM------G-ADNLAMVSALQQM--GASIQVIEDENILVVEGVGMTGLQAP 88 (441)
T ss_dssp EECCBCHHHHHHHHHHHHHSBSEEEEESCCC------S-HHHHHHHHHHHHT--TCEEEEEGGGTEEEEECCCTTCCCCC
T ss_pred EEcCCcHHHHHHHHHHHHHcCCCEEEcCCCC------c-HHHHHHHHHHHHc--CCEEEEecCCCEEEEeccccCCCCCC
Confidence 34445533 2236788999999999998643 2 3344667888877 4455544244577777753 3333
Q ss_pred ceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEEEEEeeCCCC
Q 017072 84 RNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESRGSPP 162 (378)
Q Consensus 84 ~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~~i~krG~~P 162 (378)
. -.+||+.+|....+|-+ +++.... +.+|.|+-.-. ..|+|-+ +-.|++||+. + ..+.||.|
T Consensus 89 ~-~~i~~g~sgtt~r~l~g---~l~~~~g--~~~l~G~~~l~-~RPi~~~----~~~L~~lGa~---i---~~~~g~~p 150 (441)
T 3slh_A 89 P-EALDCGNSGTAIRLLSG---LLAGQPF--NTVLTGDSSLQ-RRPMKRI----IDPLTLMGAK---I---DSTGNVPP 150 (441)
T ss_dssp S-SCEECTTCHHHHHHHHH---HHTTSSS--EEEEECCTTGG-GSCCHHH----HHHHHHTTCE---E---EEETTEEE
T ss_pred c-ceeeeccccccHHHHHH---HHHhCCC--EEEEeCCcccc-cCCHHHH----HHHHHHcCCE---E---EecCCeEE
Confidence 4 46899999998885544 3333333 45688865443 4455433 3347889997 6 24456655
No 8
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=88.94 E-value=3.6 Score=41.36 Aligned_cols=116 Identities=9% Similarity=0.194 Sum_probs=70.1
Q ss_pred HHHHHhh-cCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccc-------eEEEEeCCcccCCceEEEec
Q 017072 19 RLVLSTL-ASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETG-------TELEYKPGIVMGGRNLVHDC 90 (378)
Q Consensus 19 alaLS~l-tgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~g-------t~l~F~Pg~i~~g~~~~~d~ 90 (378)
=++.+++ +|-.|+|.|+..+... ..++..|+++ |..++....+ -.++..++.+++- .+|.
T Consensus 243 ~l~aaai~~gg~v~i~~~~~~~~~-------~~il~~L~~m--Ga~i~~~~~~~~~ge~~~~i~v~~~~l~~~---~i~~ 310 (455)
T 3rmt_A 243 FLVAGAMVPHSRITLTNVGINPTR-------AGILEVLKQM--GATLAMENERVQGGEPVADLTIETSVLQGV---EIGG 310 (455)
T ss_dssp HHHHHHHSTTEEEEEEEEECCTTT-------THHHHHHHHT--TCEEEEEEEEEETTEEEEEEEEECCCCBCC---CEET
T ss_pred HHHHHHhcCCCEEEECCCCCchhH-------HHHHHHHHHc--CCEEEEcCCcccCCccceEEEEecCCceeE---EEeC
Confidence 3667888 7899999999754321 3477888876 3344443321 1377777766543 4555
Q ss_pred CCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 91 GVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 91 ~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
...-..+-.++++..++.|++.++. |+|.-+...-.| |-+. .+..-|+|||++ ++.
T Consensus 311 ~~~P~~~D~~p~lavla~~a~G~s~--I~~~~~LrvkEs-dRi~-a~~~eL~kmGa~---i~~ 366 (455)
T 3rmt_A 311 DIIPRLIDEIPIIAVLATQASGRTV--IKDAEELKVKET-NRID-TVVSELTKLGAS---IHA 366 (455)
T ss_dssp THHHHHGGGHHHHHHHHHTSBSCEE--EEC-----CHHH-HHHH-HHHHHHHHTTCC---EEE
T ss_pred ccCCchHHHHHHHHHHHHhCCCcEE--EEccccccccch-hHHH-HHHHHHHHCCCE---EEE
Confidence 4322223557788888899999886 445443221111 4443 678899999998 765
No 9
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=88.37 E-value=2.2 Score=42.72 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCC
Q 017072 46 PHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDP 125 (378)
Q Consensus 46 ~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~ 125 (378)
..|+.+|+.+ |..+.... + .+.+..+.+++++ |.+|+.+ +-+...+|..+++++..+.| + |..
T Consensus 149 ~~~~~~L~~l-----Ga~i~~~~-g-~~~i~~~~l~g~~-~~l~~~S----~q~~s~lLlAa~la~G~t~I--~---~~~ 211 (454)
T 3r38_A 149 DLHLKGFEAM-----GAVVKIEN-G-YIEATAEKLVGAK-VYLDFPS----VGATQNIMMAATLAEGTTVI--E---NVA 211 (454)
T ss_dssp HHHHHHHHHT-----TCEEEEET-T-EEEEECSSCBCCE-EECSSCC----HHHHHHHHHHHTTSBSEEEE--E---SCC
T ss_pred HHHHHHHHHC-----CCEEEecC-C-EEEEEEcCccCcE-EEecCCC----HHHHHHHHHHHhcCCCcEEE--E---cCC
Confidence 4566665544 33444333 3 4667776789999 9999744 33667888888898887765 3 443
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC
Q 017072 126 KDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 126 ~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
..| |+. .++-+|++||++
T Consensus 212 ~~p---~i~-~t~~~L~~~Ga~ 229 (454)
T 3r38_A 212 REP---EIV-DLANFLNQMGAR 229 (454)
T ss_dssp CCH---HHH-HHHHHHHHTTCC
T ss_pred CCc---HHH-HHHHHHHHCCCC
Confidence 344 444 357899999998
No 10
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=87.27 E-value=5.4 Score=39.42 Aligned_cols=109 Identities=12% Similarity=-0.017 Sum_probs=66.7
Q ss_pred HHHHHHhhcCC-cEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEecCCCchh
Q 017072 18 QRLVLSTLAST-PVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHDCGVSRSI 96 (378)
Q Consensus 18 ~alaLS~ltgk-pi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d~~tagSi 96 (378)
.-.+|.+..++ .+.+.-=-.=+.+| ...|+.+|+.+ |..++.+ .+ .+.+..+.+++++ +.++. .|
T Consensus 105 ~l~~l~a~~~~~~~~l~G~~~l~~RP--i~~~~~~L~~l-----Ga~i~~~-~g-~~~i~~~~l~g~~-i~~~~---~S- 170 (425)
T 2yvw_A 105 SLGPLLGRFGRAVVGLPGGCSIGARP--IDQHLKFFKEA-----GADVEVR-EG-YVYVNLKEKRRVH-FKFDL---VT- 170 (425)
T ss_dssp GHHHHHHHHSEEEEECCCCBTTBCCC--CHHHHHHHHHT-----TCEEEEE-TT-EEEEECSSCCCCE-EECSS---CC-
T ss_pred HHHHHhccCCcEEEEECCCcccccCC--HHHHHHHHHHC-----CCEEEec-CC-EEEEEecCccceE-Eeccc---cc-
Confidence 44455554553 55554311112333 35676666654 4455443 33 5777777788888 88874 23
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceE
Q 017072 97 GYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLE 152 (378)
Q Consensus 97 ~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~ 152 (378)
..+...+|..+++++..++| . | .++-+|+.. ++.+|++||++ ++
T Consensus 171 ~~~~s~lllaa~la~g~t~i--~---~---~~~~~~i~~-t~~~L~~~Ga~---i~ 214 (425)
T 2yvw_A 171 VTGTENALLYLASVPEESIL--E---N---IALEPEVMD-LIEVLKKMGAH---VK 214 (425)
T ss_dssp HHHHHHHHHHHTTCSSEEEE--E---S---CCCCHHHHH-HHHHHHHTTCE---EE
T ss_pred HHHHHHHHHHHHhcCCCEEE--e---C---CCCCchHHH-HHHHHHHCCCe---EE
Confidence 45667777778888876644 4 3 366677774 48999999998 65
No 11
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=87.25 E-value=3.2 Score=40.95 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=50.8
Q ss_pred HHHHHHHccceeeeeeccceEEEEeC-CcccCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcH
Q 017072 52 LRLLERICDDCVVEINETGTELEYKP-GIVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSV 130 (378)
Q Consensus 52 l~ll~~l~~g~~~~~~~~gt~l~F~P-g~i~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~ 130 (378)
++.|+++ |..++.+.+ .+.+.. +.+++++ +.++. -| +-+...++..++|++.++.| + |.. +-
T Consensus 126 ~~~L~~m--Ga~i~~~~g--~~~v~~~~~L~g~~-i~~~~---~s-~~~~~~ll~aa~~a~G~t~I--~---~~~---~e 188 (419)
T 1ejd_A 126 IFGLEKL--GAEIKLEEG--YVKASVNGRLKGAH-IVMDK---VS-VGATVTIMSAATLAEGTTII--E---NAA---RE 188 (419)
T ss_dssp HHHHHHT--TCEEEEETT--EEEEECSSSCBCCE-EECSS---CC-HHHHHHHHHHHTTSBSEEEE--E---TCC---CC
T ss_pred HHHHHHC--CCEEEEcCC--EEEEEEcCCccceE-EecCC---CC-HHHHHHHHHHHhcCCCcEEE--E---eCC---CC
Confidence 4444444 345544333 466654 4788888 87764 23 44678999999999998854 3 332 23
Q ss_pred HHHHHHHHHHHhhcCCC
Q 017072 131 DTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 131 Dy~~~v~~p~l~~~G~~ 147 (378)
+|+. .++..|++||++
T Consensus 189 ~~i~-~t~~~L~~~Ga~ 204 (419)
T 1ejd_A 189 PEIV-DTANFLVALGAK 204 (419)
T ss_dssp HHHH-HHHHHHHHTTCE
T ss_pred chHH-HHHHHHHHCCCE
Confidence 4665 677899999997
No 12
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=86.57 E-value=8 Score=38.21 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=75.0
Q ss_pred EEEeCh--HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCc---ccC
Q 017072 8 KRLKGS--QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGI---VMG 82 (378)
Q Consensus 8 i~~dG~--q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~---i~~ 82 (378)
+++.|+ --+ .+|.+++++.-+.+|+|.= ..+.+...+++|.++ |..++. .+++++..+.. ...
T Consensus 14 v~ipgsKs~t~-r~Llaa~La~g~t~I~n~~-------~s~Dv~~~~~~L~~l--G~~i~~--~~~~~~I~g~~~~~~~~ 81 (427)
T 1rf6_A 14 IRVPGDKSISH-RSIIFGSLAEGETKVYDIL-------RGEDVLSTMQVFRDL--GVEIED--KDGVITVQGVGMAGLKA 81 (427)
T ss_dssp ECCCBCHHHHH-HHHHHHHHSBSEEEEESCC-------CSHHHHHHHHHHHHT--TCEEEE--ETTEEEEECCCSSCCCC
T ss_pred EEcCCcHHHHH-HHHHHHHHcCCCEEEccCC-------CCHHHHHHHHHHHHc--CCeEEe--cCCEEEEECCCCCCcCC
Confidence 555665 223 5677799999999997742 237788889999988 334542 23467777642 233
Q ss_pred CceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 83 GRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 83 g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
.+ ..+||+.+|+..+++=+++ +.+ +.++++.|+-....-| +| .++-.|++||.+
T Consensus 82 p~-~~id~~~sgt~~rll~a~l--a~~---~~~v~l~G~~~l~~Rp-i~----~~l~~L~~mGa~ 135 (427)
T 1rf6_A 82 PQ-NALNMGNSGTSIRLISGVL--AGA---DFEVEMFGDDSLSKRP-MD----RVTLPLKKMGVS 135 (427)
T ss_dssp CS-SCEECTTCHHHHHHHHHHG--GGC---SSEEEEECCTTGGGSC-CH----HHHHHHHHTTCE
T ss_pred Cc-ceeeccccchHHHHHHHHH--hcC---CcEEEEeCCCccCCCC-HH----HHHHHHHHCCCE
Confidence 34 5689999998887665554 222 3678899875433223 22 344568889987
No 13
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=86.09 E-value=5.1 Score=40.06 Aligned_cols=115 Identities=25% Similarity=0.336 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeC-CcccCCceEEEecC-
Q 017072 14 QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKP-GIVMGGRNLVHDCG- 91 (378)
Q Consensus 14 q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~P-g~i~~g~~~~~d~~- 91 (378)
.-+|.-.+|.++...++.+..=-.=+++| ...|+.+|+.+ |..++.+ ...++..+ +.+++++ |.++..
T Consensus 97 ts~R~l~~lla~~~~~~~l~G~~~l~~RP--i~~~~~~L~~l-----Ga~i~~~--~~p~~i~g~~~l~g~~-i~i~~d~ 166 (450)
T 2o0b_A 97 TVLRFVPPLAALGSVPVTFDGDQQARGRP--IAPLLDALREL-----GVAVDGT--GLPFRVRGNGSLAGGT-VAIDASA 166 (450)
T ss_dssp HHHHHHHHHHTTSSSEEEEECCGGGGGSC--CHHHHHHHHHT-----TCEEECS--SSSEEEECCSCCCCEE-EEECCTT
T ss_pred hHHHHHHHHHhcCCceEEEeCCCcCCCCC--HHHHHHHHHHC-----CCEEEcC--ceeEEEEecCCCcCcE-EEcCCCC
Confidence 47786666666555566655410013466 58887777765 3344322 33455554 4688888 888763
Q ss_pred CCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 92 VSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 92 tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
++ -+..++|..+++++..++|++.|.. ..+-+|+. .++.+|++||++
T Consensus 167 Ss----q~~salllAA~~~~g~~~I~~~~~~----~~s~p~i~-~t~~~L~~~Ga~ 213 (450)
T 2o0b_A 167 SS----QFVSGLLLSAASFTDGLTVQHTGSS----LPSAPHIA-MTAAMLRQAGVD 213 (450)
T ss_dssp CT----HHHHHHHHHGGGSTTCEEEEECSSC----CCCHHHHH-HHHHHHHHTTCC
T ss_pred CH----HHHHHHHHHHHHcCCCeEEEeCCCC----cCCCcHHH-HHHHHHHHCCCe
Confidence 33 3666778888899998998886631 34667776 677899999998
No 14
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=85.30 E-value=3.3 Score=41.22 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=71.2
Q ss_pred HHHHhhcCCc-EEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeee----ccc---eEEEEeCCcccCCceEEEecC
Q 017072 20 LVLSTLASTP-VLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEIN----ETG---TELEYKPGIVMGGRNLVHDCG 91 (378)
Q Consensus 20 laLS~ltgkp-i~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~----~~g---t~l~F~Pg~i~~g~~~~~d~~ 91 (378)
++.+++++-. ++|.|+..++..++ +++.|.++- ..++.. .++ ..++..++.+++.+ +|+.
T Consensus 247 l~aa~~~~g~~v~i~~~~~~~~~~~-------~~~~L~~mG--a~i~~~~~~~~~g~~~~~i~v~~~~l~~~~---i~~~ 314 (445)
T 2pqc_A 247 LVAALLVPGSDVTILNVLMNPTRTG-------LILTLQEMG--ADIEVINPRLAGGEDVADLRVRSSTLKGVT---VPED 314 (445)
T ss_dssp HHHHHHSTTCEEEEEEEECCGGGCH-------HHHHHHHHT--CEEEEEEEEEETTEEEEEEEEECCCCBCCE---ECGG
T ss_pred HHHHHHCCCCEEEECCCCCCCCcch-------HHHHHHHcC--CeEEEccccccCCCccCcEEEeCCCCCceE---eccc
Confidence 4456677656 99999986665553 667777663 344431 121 35777766666554 4554
Q ss_pred CCchhHHHHHHHHHhhhcCCCCeEEEEEeccC--CCCCCcHHHHHHHHHHHHhhcCCCCCceE
Q 017072 92 VSRSIGYFLEPLILVGLFAKKPISIRLRGITN--DPKDPSVDTFRSTTLPLLKRFGVPSEGLE 152 (378)
Q Consensus 92 tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~--~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~ 152 (378)
..-+.+-.+.+++.+++|++.+++|+ +.-+ +..+ |.+. .+...|++||++ ++
T Consensus 315 ~~p~~~D~~p~l~~~a~~a~G~s~i~--~~~~lr~kEs---dRi~-~~~~eL~~~Ga~---i~ 368 (445)
T 2pqc_A 315 RAPSMIDEYPILAVAAAFAEGATVMN--GLEELRVKES---DRLS-AVANGLKLNGVD---CD 368 (445)
T ss_dssp GGGGTGGGHHHHHHHHTTSBSEEEEC--CCGGGGGSSS---CHHH-HHHHHHHHTTCE---EE
T ss_pred cCCchHHHHHHHHHHHHhCCCcEEEE--cccccccccc---hHHH-HHHHHHHHCCCE---EE
Confidence 43334578889999999999987655 4433 3223 3443 466889999998 65
No 15
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=85.24 E-value=7.5 Score=38.73 Aligned_cols=83 Identities=25% Similarity=0.303 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHccceeeeeeccceEEEEeCC-cccCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCC
Q 017072 46 PHEISLLRLLERICDDCVVEINETGTELEYKPG-IVMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITND 124 (378)
Q Consensus 46 ~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg-~i~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~ 124 (378)
..|+.+|+.+ |..+..+.+.--++...+ .+++++ |.++..+ +-+...+|..+++++.++.+. +
T Consensus 129 ~~~~~~L~~l-----Ga~i~~~~g~~p~~i~g~~~l~g~~-i~l~~~S----sq~~s~lLlAa~~a~g~t~i~-----e- 192 (441)
T 3slh_A 129 KRIIDPLTLM-----GAKIDSTGNVPPLKIYGNPRLTGIH-YQLPMAS----AQVKSCLLLAGLYARGKTCIT-----E- 192 (441)
T ss_dssp HHHHHHHHHT-----TCEEEEETTEEEEEEECCTTCBCCE-EECSSCC----HHHHHHHHHHHTTSBSEEEEE-----C-
T ss_pred HHHHHHHHHc-----CCEEEecCCeEEEEEEcCCCccceE-EEecCCC----HHHHHHHHHHHHhcCCCeEee-----C-
Confidence 5777776655 444432333234444554 489999 9988633 567788899999998877663 1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCCceE
Q 017072 125 PKDPSVDTFRSTTLPLLKRFGVPSEGLE 152 (378)
Q Consensus 125 ~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~ 152 (378)
+ .|+.|+ +..+|++||++ ++
T Consensus 193 ~-~~~~~~----t~~~L~~~Ga~---i~ 212 (441)
T 3slh_A 193 P-APSRDH----TERLLKHFHYT---LQ 212 (441)
T ss_dssp S-SCCCCH----HHHHHHHTTCC---CE
T ss_pred C-cccHHH----HHHHHHHCCCe---EE
Confidence 1 344444 56799999998 65
No 16
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=85.15 E-value=6.8 Score=39.09 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=69.5
Q ss_pred HHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEEe-cCCCchhHH
Q 017072 20 LVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVHD-CGVSRSIGY 98 (378)
Q Consensus 20 laLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~d-~~tagSi~l 98 (378)
++++++++.+++|.|+..+...+ + ..+++.++++ |..++...+ .++..++.+++.+ +..+ ++ -
T Consensus 275 l~aaal~~g~v~i~~~~~~~~~~---D--~~i~~~L~~m--Ga~i~~~~~--~i~v~~~~L~g~~-i~~~~~P------D 338 (450)
T 3nvs_A 275 LAAAAIKGGEVKVTGIGKNSIQG---D--IQFADALEKM--GAQIEWGDD--YVIARRGELNAVD-LDFNHIP------D 338 (450)
T ss_dssp HHHHHHHCSEEEEESCCTTCSCG---G--GGHHHHHHHH--TCEEEECSS--EEEEECCCCBCCE-EECTTCT------T
T ss_pred HHHHHhcCCeEEEccCCcccccc---h--HHHHHHHHHc--CCeEEEeCC--EEEEecCCcCcEE-eecCCCc------C
Confidence 46778899999999998776432 2 3346777776 445554444 5777788888766 5443 32 2
Q ss_pred HHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 99 FLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 99 ~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
+.+++..++.+++.++.| +|.-+..+--+ |=+. .+...|++||.+
T Consensus 339 ~~~~l~~~aa~A~G~t~I--~~~~~lR~ke~-dRi~-~l~~eL~kmGa~ 383 (450)
T 3nvs_A 339 AAMTIATTALFAKGTTAI--RNVYNWRVKET-DRLA-AMATELRKVGAT 383 (450)
T ss_dssp THHHHHHHGGGSBSCEEE--ESCGGGGGSSS-CHHH-HHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCCCEEE--echhhccCCCc-hHHH-HHHHHHHHcCCE
Confidence 466778888899998875 46555432211 2111 355679999997
No 17
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=82.21 E-value=14 Score=36.77 Aligned_cols=115 Identities=25% Similarity=0.330 Sum_probs=70.7
Q ss_pred EEEeCh--HHHHHHHHHHhhcC----CcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeC--Cc
Q 017072 8 KRLKGS--QSLRQRLVLSTLAS----TPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKP--GI 79 (378)
Q Consensus 8 i~~dG~--q~lR~alaLS~ltg----kpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~P--g~ 79 (378)
|.+-|+ .-+|. |++++++. -+++|+|. |-.++- ...+++|.++ |..++. .++ .++..+ +.
T Consensus 17 v~vpgsKs~s~R~-l~~aaLa~~~~~g~~~i~~~------l~~~D~-~~~~~~L~~l--Ga~i~~-~~~-~l~I~g~~~~ 84 (450)
T 2o0b_A 17 VTVPGSKSQTNRA-LVLAALAAAQGRGASTISGA------LRSRDT-ELMLDALQTL--GLRVDG-VGS-ELTVSGRIEP 84 (450)
T ss_dssp ECCCBCHHHHHHH-HHHHHHHHHTTCCCEEEETC------CCSHHH-HHHHHHHHHT--TCEEEC-SSS-CEEEESCCCC
T ss_pred EEccCcHHHHHHH-HHHHHhcCCCCCCeEEEecC------CCchHH-HHHHHHHHHc--CCEEEE-eCC-EEEEECCCCC
Confidence 445565 45666 45899998 89999986 334443 3557777776 334442 222 566665 33
Q ss_pred ccCCceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCC
Q 017072 80 VMGGRNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVP 147 (378)
Q Consensus 80 i~~g~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~ 147 (378)
+.+ ..+||+.+|....+|=++| ++.+. .++|.|+-.-..=| +| .++..|++||+.
T Consensus 85 l~~---~~i~~g~sgts~R~l~~ll---a~~~~--~~~l~G~~~l~~RP-i~----~~~~~L~~lGa~ 139 (450)
T 2o0b_A 85 GPG---ARVDCGLAGTVLRFVPPLA---ALGSV--PVTFDGDQQARGRP-IA----PLLDALRELGVA 139 (450)
T ss_dssp CTT---CEEECTTCHHHHHHHHHHH---TTSSS--EEEEECCGGGGGSC-CH----HHHHHHHHTTCE
T ss_pred cCc---eeeeeccchhHHHHHHHHH---hcCCc--eEEEeCCCcCCCCC-HH----HHHHHHHHCCCE
Confidence 443 3578888886666554444 45444 47788875554445 44 345568889987
No 18
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=75.88 E-value=15 Score=36.88 Aligned_cols=109 Identities=21% Similarity=0.263 Sum_probs=66.6
Q ss_pred HHHHhh-cCCcEEEeEeeCCCCCCCChHHHH-HHHHHHHHHccceeeeeeccceEEEEeC--CcccCCceEEEecCCCch
Q 017072 20 LVLSTL-ASTPVLIDDIRADDTMPGLRPHEI-SLLRLLERICDDCVVEINETGTELEYKP--GIVMGGRNLVHDCGVSRS 95 (378)
Q Consensus 20 laLS~l-tgkpi~I~nIR~~r~~PGL~~qhl-~~l~ll~~l~~g~~~~~~~~gt~l~F~P--g~i~~g~~~~~d~~tagS 95 (378)
++.+++ ++-.|+|.+...++ + .+|+ .++..|.++ |..++...+ .++..+ +.+++.+ +..+- .+.
T Consensus 272 l~aaal~~gg~v~l~g~~~~s----~-~~~~~~i~~~L~~m--Ga~i~~~~~--~i~v~~~~~~L~g~~-i~~~~--~~~ 339 (479)
T 4fqd_A 272 ICAGVLLADEPLRITGPGIDR----A-VHALAPEFDLLDRM--GVRVDVGAD--EVTAHPLTKPLRPVE-FTAMS--RGV 339 (479)
T ss_dssp HHHHHHHBSSCEEEECTTHHH----H-HHHTHHHHHHHHHH--TCCEEECSS--EEEECCCSSCBCCCE-EEECT--TSB
T ss_pred HHHHHHcCCCeEEEeCCCCcc----c-cCchHHHHHHHHHC--CCEEEEcCC--eEEEEecCCCCCCeE-EecCC--CCC
Confidence 345556 88899998754221 0 3453 478888887 334544433 466665 7788777 65532 222
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 96 IGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 96 i~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
.+-+..+++.+++|++.+++|+ .. +.. + |..+...|++||++ ++.
T Consensus 340 ~~D~~p~l~~~a~~A~G~t~I~--e~--i~e--~----R~~~~~eL~~lGa~---i~~ 384 (479)
T 4fqd_A 340 FSDSQPFLALLGAYAEGPTYIR--EA--VWE--H----RFGFAPELEALGIR---TAV 384 (479)
T ss_dssp CTTTHHHHHHHHTTBSEEEEEE--ES--SSS--S----CCTTHHHHHHHTCC---EEE
T ss_pred CHHHHHHHHHHHHhCCCcEEEE--cC--Ccc--c----HHHHHHHHHHCCCe---EEE
Confidence 2345667778888999988765 22 111 1 22367899999998 764
No 19
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=72.79 E-value=24 Score=34.59 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=67.7
Q ss_pred HHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeC--CcccCCceEEEecCC-Cch
Q 017072 19 RLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKP--GIVMGGRNLVHDCGV-SRS 95 (378)
Q Consensus 19 alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~P--g~i~~g~~~~~d~~t-agS 95 (378)
-++.+++++-+|+|.|...++ + | .+++.++++ |..++... ..++..+ +.+++- .+|+.. .+.
T Consensus 238 ~~~aa~~~~g~v~i~~~~~~~----~--~--~~~~~L~~m--Ga~i~~~~--~~i~v~~~~~~l~~~---~i~~~~~p~~ 302 (419)
T 1ejd_A 238 FLVAAAISGGKIVCRNAQPDT----L--D--AVLAKLREA--GADIETGE--DWISLDMHGKRPKAV---TVRTAPHPAF 302 (419)
T ss_dssp HHHHHHTTTCEEEEESCCGGG----C--H--HHHHHHHHT--TCEEEECS--SEEEEECTTCCCBCC---CEECCSTTSC
T ss_pred HHHHHHhcCCeEEEeCcCccc----H--H--HHHHHHHHC--CCEEEEcC--CEEEEEecCCCccce---EEeCCCCCCC
Confidence 356677789999999987432 2 1 578888887 33454433 3566665 566543 345432 244
Q ss_pred hHHHHHHHHHhhhcCCCCeEEEEEe-ccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 96 IGYFLEPLILVGLFAKKPISIRLRG-ITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 96 i~l~lq~lLp~l~f~~~~~~ltl~G-gT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
.+-..+++..++.|++.++.|+ + .-+..+. ...-|++||++ ++.
T Consensus 303 ~~D~~p~la~la~~a~g~s~i~--~~i~~~R~~---------~~~eL~~lG~~---i~~ 347 (419)
T 1ejd_A 303 PTDMQAQFTLLNLVAEGTGVIT--ETIFENRFM---------HVPELIRMGAH---AEI 347 (419)
T ss_dssp CGGGHHHHHHHHHTSBSEEEEE--CCSCSSCCT---------HHHHHHHTTCE---EEE
T ss_pred cHHHHHHHHHHHHhCCCcEEEE--ccchHhHHH---------HHHHHHHCCCE---EEE
Confidence 5578888899999999988655 3 2222221 26779999997 654
No 20
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=59.41 E-value=30 Score=34.00 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=61.1
Q ss_pred HHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccceEEEEeC-CcccCCceEEEecCCCchhHH
Q 017072 20 LVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETGTELEYKP-GIVMGGRNLVHDCGVSRSIGY 98 (378)
Q Consensus 20 laLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~P-g~i~~g~~~~~d~~tagSi~l 98 (378)
++.+++++-.++|.|.+.+ =++ .+++.|.++ |..++...+ .++..+ +.+++.+ +..+--+.-++ -
T Consensus 246 l~aaal~~g~v~l~g~~~~----~~~----~l~~~L~~m--Ga~i~~~~~--~i~i~~~~~L~g~~-i~~~~~p~~p~-d 311 (425)
T 2yvw_A 246 MVGAVLTDGEILLENARIN----HLR----AVVEKLKLI--GGEVVEENG--NLRVFRKESLRACD-IETQVYPGFPT-D 311 (425)
T ss_dssp HHHHHHTTCEEEEESCCGG----GCH----HHHHHHHHH--TEEEEEETT--EEEEEECSCCBCCC-EEBCSTTSBCH-H
T ss_pred HHHHHhCCCcEEEeCCCch----HHH----HHHHHHHHC--CCEEEEcCC--EEEEEecCCccceE-EeCCCCCCCcc-c
Confidence 3446677788999997521 122 367777765 345554333 355554 6788777 65442221122 3
Q ss_pred HHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 99 FLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 99 ~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
....++-.++|++.+++| ++. ... . |......|++||++ ++.
T Consensus 312 ~~~~~~~aa~~a~G~t~I--~~~--~~e--~----r~~~~~~L~~~Ga~---i~~ 353 (425)
T 2yvw_A 312 MQAQFMALLSVAKGKSRI--KEN--IFE--H----RFHHAQELNRLGAN---ITV 353 (425)
T ss_dssp HHHHHHHHHTTSBSEEEE--ECS--SCT--T----CCHHHHHHHTTTCC---EEE
T ss_pred HHHHHHHHHHHCCCeEEE--EcC--cHH--H----HHHHHHHHHhCCCE---EEE
Confidence 334467777788887754 431 111 1 22246779999998 654
No 21
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=51.38 E-value=36 Score=34.13 Aligned_cols=89 Identities=9% Similarity=0.217 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHccceeeeeeccceEEEEeCCcccCCceEEE-ecCC-CchhH--HHHH---HHHHhhhcCCCCeEEEE
Q 017072 46 PHEISLLRLLERICDDCVVEINETGTELEYKPGIVMGGRNLVH-DCGV-SRSIG--YFLE---PLILVGLFAKKPISIRL 118 (378)
Q Consensus 46 ~qhl~~l~ll~~l~~g~~~~~~~~gt~l~F~Pg~i~~g~~~~~-d~~t-agSi~--l~lq---~lLp~l~f~~~~~~ltl 118 (378)
..|+.+|+.+ |..+.....| .+-+..+.+++++ |++ |+.+ +-=|| .|+. .+|..+++++..++|+
T Consensus 142 ~~~~~~L~~l-----Ga~i~~~~~g-~~p~~~~~l~g~~-i~l~~~sSSSQfiS~lq~v~~t~~lLlaa~la~G~t~I~- 213 (479)
T 4fqd_A 142 EHLLDVMGRF-----GVTTRLTADG-SVDLTAQRLTPCT-IDMLDYTRNKALMSGPCYSGAVKTALLMGAVTHGTTTLQ- 213 (479)
T ss_dssp HHHHHHHHTT-----TCEEEECTTS-CEEEECSSCCCCE-EEGGGGCSBTTTTBCTTHHHHHHHHHHHHHTSEEEEEEE-
T ss_pred HHHHHHHHHC-----CCEEEeccCC-ceEEEEcCccccE-EEeccccchHHhhccchhHHHHHHHHHHHHhCCCcEEEe-
Confidence 5566665543 4455443323 3455567899999 999 7643 11122 2222 3677888888877653
Q ss_pred EeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 119 RGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 119 ~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
|. .+-+|+. .++-+|++||++ ++.
T Consensus 214 ----~~---~~~pdi~-~Tl~~L~~~Ga~---I~~ 237 (479)
T 4fqd_A 214 ----HP---YLKPDVT-DMVTVLRDLGAD---IEF 237 (479)
T ss_dssp ----SC---CCSHHHH-HHHHHHHHHTCC---EEE
T ss_pred ----cC---CCChHHH-HHHHHHHHCCCe---EEE
Confidence 43 3445554 478999999998 653
No 22
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=51.29 E-value=1e+02 Score=30.45 Aligned_cols=116 Identities=14% Similarity=0.184 Sum_probs=63.5
Q ss_pred EEEeCh--HHHHHHHHHHhhcCCcEEEeEeeCCCCCCCChHHHHHHHHHHHHHccceeeeeeccc-eEEEEeCC-cccCC
Q 017072 8 KRLKGS--QSLRQRLVLSTLASTPVLIDDIRADDTMPGLRPHEISLLRLLERICDDCVVEINETG-TELEYKPG-IVMGG 83 (378)
Q Consensus 8 i~~dG~--q~lR~alaLS~ltgkpi~I~nIR~~r~~PGL~~qhl~~l~ll~~l~~g~~~~~~~~g-t~l~F~Pg-~i~~g 83 (378)
+++|.. |+.=..|..+++..-+.+|+|.- ..++=...+++|.++ |..++ ..+ .++...|+ .+.+.
T Consensus 181 ~~l~~~S~q~~s~lLlAa~la~G~t~I~~~~-------~~p~i~~t~~~L~~~--Ga~I~--~~~~~~i~I~g~~~l~~~ 249 (454)
T 3r38_A 181 VYLDFPSVGATQNIMMAATLAEGTTVIENVA-------REPEIVDLANFLNQM--GARVI--GAGTEVIRIEGVKELTAT 249 (454)
T ss_dssp EECSSCCHHHHHHHHHHHTTSBSEEEEESCC-------CCHHHHHHHHHHHHT--TCCEE--CTTSSEEEEECCSCEECC
T ss_pred EEecCCCHHHHHHHHHHHhcCCCcEEEEcCC-------CCcHHHHHHHHHHHC--CCCEE--ECCCeEEEEecCcccccc
Confidence 445543 66544455556666677776532 234333456777776 33444 233 47777775 57776
Q ss_pred ceEEEecCCCchhHHHHHHHHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHHHHhhcCCCCCceEE
Q 017072 84 RNLVHDCGVSRSIGYFLEPLILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLEL 153 (378)
Q Consensus 84 ~~~~~d~~tagSi~l~lq~lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p~l~~~G~~~~~~~~ 153 (378)
+ |..... ..+.++++ ..++.++. +++++| +. .+ ++ +.++-.|++||++ ++.
T Consensus 250 ~-~~v~~D-~s~A~~~l----~aaal~gg--~v~i~g---~~-~~---~~-~~i~~~L~~mGa~---i~~ 300 (454)
T 3r38_A 250 E-HSIIPD-RIEAGTFM----IAAAITGG--NVLIED---AV-PE---HI-SSLIAKLEEMGVQ---IIE 300 (454)
T ss_dssp E-EECCBC-HHHHHHHH----HHHHHTTC--EEEEES---CC-GG---GG-HHHHHHHHHTTCE---EEE
T ss_pred c-cccCCC-hhHHHHHH----HHHHHcCC--cEEEcC---CC-ch---HH-HHHHHHHHHCCCE---EEe
Confidence 6 665322 23334443 22223343 567776 22 12 33 3688899999998 654
No 23
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=28.14 E-value=43 Score=32.36 Aligned_cols=138 Identities=16% Similarity=0.127 Sum_probs=87.2
Q ss_pred cceEEEeCh-------HHHHHHHHHHhhcCC---cEEEeEeeCCCCCC-------CChHH--------HHHHHHHHHHH-
Q 017072 5 TSYKRLKGS-------QSLRQRLVLSTLAST---PVLIDDIRADDTMP-------GLRPH--------EISLLRLLERI- 58 (378)
Q Consensus 5 ~~~i~~dG~-------q~lR~alaLS~ltgk---pi~I~nIR~~r~~P-------GL~~q--------hl~~l~ll~~l- 58 (378)
.+++.+=|. |.+.+|-.|..+..+ -+.|. .|+.-.|| ||-.+ =..+|++++++
T Consensus 52 ~rllvIaGPCsie~~e~aleyA~~L~~~~~~l~d~l~iv-mR~yfeKPRTs~g~kGl~~dP~ld~s~~i~~GL~ilr~ll 130 (350)
T 1n8f_A 52 DRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIV-MRVYFEKPRTTVGWKGLINDPHMDNSFQINDGLRIARKLL 130 (350)
T ss_dssp CCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTTTTEEEE-EECCCCCCCSSSSCCCTTTCTTSSSCCCHHHHHHHHHHHH
T ss_pred CceEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEE-EEeccccCcCCcCcCCCCCCCCccccccHHHHHHHHHHHH
Confidence 346667774 999999999988766 35554 66654444 44411 14677877777
Q ss_pred --cc--c--eeeeeeccc--------eEEEEeCCccc---------C--CceEEEecCCCchhHHHHHH-----------
Q 017072 59 --CD--D--CVVEINETG--------TELEYKPGIVM---------G--GRNLVHDCGVSRSIGYFLEP----------- 102 (378)
Q Consensus 59 --~~--g--~~~~~~~~g--------t~l~F~Pg~i~---------~--g~~~~~d~~tagSi~l~lq~----------- 102 (378)
-. | ...++-..- -.+.-.|-... + +.|.-|+-+|.|++.-++.+
T Consensus 131 ~~~~e~GlPv~TEvld~~~~~~vad~vd~~qIGAR~~esq~hr~~asg~~~PVg~Kngt~g~i~~~l~Ai~aa~~~h~fl 210 (350)
T 1n8f_A 131 LDINDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFL 210 (350)
T ss_dssp HHHHHTTCCEEEECCCSSTHHHHGGGCSEEEECTTTTTCHHHHHHHHTCSSCEEEECCTTCCSHHHHHHHHHHTSCCEEE
T ss_pred HHHHHhCCceEEeecCcccHHHHhhcCcEEEECCccccCHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHHHhCCceee
Confidence 11 1 011110000 02222332221 1 22689999999999999999
Q ss_pred -------HHHhhhcCCCCeEEEEEeccCCCCCCcHHHHHHHHHH-HHhhcCCC
Q 017072 103 -------LILVGLFAKKPISIRLRGITNDPKDPSVDTFRSTTLP-LLKRFGVP 147 (378)
Q Consensus 103 -------lLp~l~f~~~~~~ltl~GgT~~~~~Ps~Dy~~~v~~p-~l~~~G~~ 147 (378)
+-.+.--.+..+.|.++|+.. |.+++....-+| .|+++|++
T Consensus 211 ~~~~~G~~~~v~t~GN~~~~lilRG~~~----~ny~~~di~~~~~~l~~~~lp 259 (350)
T 1n8f_A 211 SVTKWGHSAIVNTSGNGDCHIILRGGKE----PNYSAKHVAEVKEGLNKAGLP 259 (350)
T ss_dssp EECTTSBEEEEEECCCSCEEEEECCSSS----CCCSHHHHHHHHHHHHHTTCC
T ss_pred eeCCCCcEEEEECCCCCCEEEEECCCCC----CCCCHHHHHHHHHHHHHcCCC
Confidence 555555667789999999973 666777767778 89999887
Done!