Query 017074
Match_columns 378
No_of_seqs 193 out of 231
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:22:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08381 BRX: Transcription fa 100.0 2.6E-32 5.6E-37 210.0 7.3 58 142-199 2-59 (59)
2 PF08381 BRX: Transcription fa 100.0 7.2E-32 1.6E-36 207.5 7.0 58 320-377 1-58 (59)
3 PF13713 BRX_N: Transcription 99.3 1.4E-12 2.9E-17 93.8 2.7 36 25-61 4-39 (39)
4 PF06092 DUF943: Enterobacteri 68.0 3.1 6.7E-05 38.3 1.7 25 178-202 51-75 (157)
5 PF06092 DUF943: Enterobacteri 59.8 5.3 0.00011 36.8 1.6 20 358-377 52-71 (157)
6 PF06688 DUF1187: Protein of u 18.0 1.7E+02 0.0037 23.7 3.4 29 156-184 3-31 (61)
7 PF05424 Duffy_binding: Duffy 17.6 67 0.0015 29.1 1.3 15 361-375 121-135 (182)
8 PF05424 Duffy_binding: Duffy 17.5 84 0.0018 28.5 1.9 18 182-199 121-138 (182)
9 PF13119 DUF3973: Domain of un 16.0 43 0.00093 25.1 -0.3 9 1-9 1-9 (41)
10 PF10423 AMNp_N: Bacterial AMP 15.7 1.2E+02 0.0026 28.2 2.4 34 150-201 63-96 (160)
No 1
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=99.97 E-value=2.6e-32 Score=209.97 Aligned_cols=58 Identities=72% Similarity=1.290 Sum_probs=56.9
Q ss_pred CCCceEEeeCCceEEEEEeCCCCCccceEEEeehhccChHHHHHHHHHhhhHHHHHhc
Q 017074 142 EPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYN 199 (378)
Q Consensus 142 ~~~EwieQ~EPGVyITl~~~p~G~k~LKRVRFSR~~F~e~qAq~WW~eN~~rV~e~Yn 199 (378)
+++|||||+||||||||+++|||+|+||||||||++|+++||+.||+||++||+++||
T Consensus 2 ~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Yn 59 (59)
T PF08381_consen 2 EEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKYN 59 (59)
T ss_pred CCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999997
No 2
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=99.97 E-value=7.2e-32 Score=207.49 Aligned_cols=58 Identities=64% Similarity=1.179 Sum_probs=56.5
Q ss_pred ccccceeeecCCceEEEEEeCCCCccceeEEeeehhccchHHHHHHHHHHHhhhhhhc
Q 017074 320 DLETEWVEQDEPGVYITIRALPGGKRELRRVRFSREKFGEMHARLWWEENRARIHEQY 377 (378)
Q Consensus 320 ~~e~EwvEQ~EPGVYITl~~~p~G~k~LKRVRFSR~~F~e~qA~~WW~eN~~RI~e~Y 377 (378)
++++|||||+||||||||+++|||+++||||||||++|+++||+.||+||++||+++|
T Consensus 1 q~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Y 58 (59)
T PF08381_consen 1 QEEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKY 58 (59)
T ss_pred CCCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999999999999999999999999
No 3
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=99.29 E-value=1.4e-12 Score=93.83 Aligned_cols=36 Identities=56% Similarity=0.917 Sum_probs=32.7
Q ss_pred CCCCCchhHHHHHHHHHhhhhhhhhhcccccccCCCC
Q 017074 25 STGSGSTKQQAIKSLTSQLKDMALKASGAYRHCSPCT 61 (378)
Q Consensus 25 ~~~tp~t~~~aiKslt~QiKDmalK~SGa~r~ckp~~ 61 (378)
++.++.+| ++||+||+|||||++|++|+|++|+||+
T Consensus 4 aak~kaaK-e~IKsLt~QlK~maekl~~~~~~~k~~~ 39 (39)
T PF13713_consen 4 AAKCKAAK-EVIKSLTAQLKDMAEKLPGAYRNCKPCS 39 (39)
T ss_pred ccccHHHH-HHHHHHHHHHHHHHHhCchhhhccCCCC
Confidence 45567789 9999999999999999999999999995
No 4
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=67.98 E-value=3.1 Score=38.33 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=20.7
Q ss_pred cChHHHHHHHHHhhhHHHHHhcccc
Q 017074 178 FNKWQAQRWWAENYDRVMELYNVQR 202 (378)
Q Consensus 178 F~e~qAq~WW~eN~~rV~e~Ynv~~ 202 (378)
|++..==.||.+|+++|.++|+++.
T Consensus 51 ~Td~gKI~WW~~Nk~~l~~KY~ip~ 75 (157)
T PF06092_consen 51 LTDSGKINWWLKNKDMLKEKYNIPE 75 (157)
T ss_pred CCccchhhHHHHhHHHHHHhcCCCC
Confidence 4455666799999999999999775
No 5
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=59.75 E-value=5.3 Score=36.84 Aligned_cols=20 Identities=25% Similarity=0.677 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHhhhhhhc
Q 017074 358 GEMHARLWWEENRARIHEQY 377 (378)
Q Consensus 358 ~e~qA~~WW~eN~~RI~e~Y 377 (378)
++..==.||.+|+++|.++|
T Consensus 52 Td~gKI~WW~~Nk~~l~~KY 71 (157)
T PF06092_consen 52 TDSGKINWWLKNKDMLKEKY 71 (157)
T ss_pred CccchhhHHHHhHHHHHHhc
Confidence 34555579999999999998
No 6
>PF06688 DUF1187: Protein of unknown function (DUF1187); InterPro: IPR009572 This family consists of several short, hypothetical bacterial proteins of around 62 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi. The function of this family is unknown.
Probab=18.05 E-value=1.7e+02 Score=23.65 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=24.2
Q ss_pred EEEEeCCCCCccceEEEeehhccChHHHH
Q 017074 156 ITFVSLPRGGNDLKRIRFSRDMFNKWQAQ 184 (378)
Q Consensus 156 ITl~~~p~G~k~LKRVRFSR~~F~e~qAq 184 (378)
||-.+..-|+--.+++|||...-++.+-+
T Consensus 3 ItAtI~KpG~~Pv~W~rys~~kmT~~eCe 31 (61)
T PF06688_consen 3 ITATIIKPGNTPVNWTRYSDSKMTKAECE 31 (61)
T ss_pred eEEEEEcCCCCCeeeEEecCCccCHHHHH
Confidence 78888999999999999998877765543
No 7
>PF05424 Duffy_binding: Duffy binding domain; InterPro: IPR008602 This family contains several Plasmodium Duffy binding proteins. Plasmodium vivax and Plasmodium knowlesi merozoites invade Homo sapiens erythrocytes that express Duffy blood group surface determinants. The Duffy receptor family is localised in micronemes, an organelle found in all organisms of the phylum Apicomplexa [].; GO: 0004872 receptor activity, 0009405 pathogenesis, 0016021 integral to membrane; PDB: 2WAU_B 3CML_A 3CPZ_A 3BQL_A 3BQK_A 3BQI_A 3RRC_B 2XU0_A 2YK0_A 2C6J_A ....
Probab=17.58 E-value=67 Score=29.10 Aligned_cols=15 Identities=47% Similarity=0.946 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhhh
Q 017074 361 HARLWWEENRARIHE 375 (378)
Q Consensus 361 qA~~WW~eN~~RI~e 375 (378)
.-+.||++|+..|=+
T Consensus 121 ~Re~WW~~nr~~IWk 135 (182)
T PF05424_consen 121 LREDWWEENRKHIWK 135 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhhc
Confidence 458899999988754
No 8
>PF05424 Duffy_binding: Duffy binding domain; InterPro: IPR008602 This family contains several Plasmodium Duffy binding proteins. Plasmodium vivax and Plasmodium knowlesi merozoites invade Homo sapiens erythrocytes that express Duffy blood group surface determinants. The Duffy receptor family is localised in micronemes, an organelle found in all organisms of the phylum Apicomplexa [].; GO: 0004872 receptor activity, 0009405 pathogenesis, 0016021 integral to membrane; PDB: 2WAU_B 3CML_A 3CPZ_A 3BQL_A 3BQK_A 3BQI_A 3RRC_B 2XU0_A 2YK0_A 2C6J_A ....
Probab=17.48 E-value=84 Score=28.49 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhHHHHHhc
Q 017074 182 QAQRWWAENYDRVMELYN 199 (378)
Q Consensus 182 qAq~WW~eN~~rV~e~Yn 199 (378)
.-+.||++|+..|-+---
T Consensus 121 ~Re~WW~~nr~~IWkaM~ 138 (182)
T PF05424_consen 121 LREDWWEENRKHIWKAMI 138 (182)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhhccee
Confidence 458999999998866544
No 9
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=16.00 E-value=43 Score=25.05 Aligned_cols=9 Identities=44% Similarity=0.696 Sum_probs=5.7
Q ss_pred CcccccccC
Q 017074 1 MLTCIARSK 9 (378)
Q Consensus 1 MltCIacsk 9 (378)
|.-||.||+
T Consensus 1 MyYCi~Cs~ 9 (41)
T PF13119_consen 1 MYYCINCSE 9 (41)
T ss_pred CEEEEEhHH
Confidence 566666665
No 10
>PF10423 AMNp_N: Bacterial AMP nucleoside phosphorylase N-terminus ; InterPro: IPR018953 This is the N-terminal domain of bacterial AMP nucleoside phosphorylase (AMNp). The N- and C-termini form distinct domains which intertwine with each other to form a stable monomer which associates with five other monomers to yield the active hexamer. The N terminus consists of a long helix and a four-stranded sheet with a novel topology. The C terminus binds the nucleoside whereas the N terminus acts as the enzymatic regulatory domain. AMNp (3.2.2.4 from EC) catalyses the hydrolysis of AMP to form adenine and ribose 5-phosphate. thereby regulating intracellular AMP levels []. ; PDB: 1T8R_B 1T8Y_E 1T8W_A 1T8S_F 2GUW_A.
Probab=15.71 E-value=1.2e+02 Score=28.17 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=24.5
Q ss_pred eCCceEEEEEeCCCCCccceEEEeehhccChHHHHHHHHHhhhHHHHHhccc
Q 017074 150 VEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQ 201 (378)
Q Consensus 150 ~EPGVyITl~~~p~G~k~LKRVRFSR~~F~e~qAq~WW~eN~~rV~e~Ynv~ 201 (378)
.+||+|.|-++.|+ .|. ..+.|-...|++.|+|.
T Consensus 63 ~~pG~Y~tTvTRP~-------------LFr-----~YL~eQl~lL~~ny~v~ 96 (160)
T PF10423_consen 63 SEPGVYSTTVTRPD-------------LFR-----DYLREQLTLLLRNYGVP 96 (160)
T ss_dssp SSSEEEEEE---TT-------------TTH-----HHHHHHHHHHHHCC--E
T ss_pred CCCceeEEeCcCHH-------------HHH-----HHHHHHHHHHHHcCCCc
Confidence 47999999999984 554 48999999999999974
Done!