Query 017074
Match_columns 378
No_of_seqs 193 out of 231
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:30:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g3w_A YAEQ protein, hypotheti 22.6 32 0.0011 31.3 1.6 26 177-202 106-131 (182)
2 2g3w_A YAEQ protein, hypotheti 22.0 39 0.0013 30.7 2.1 20 356-375 106-125 (182)
3 3c0u_A Uncharacterized protein 18.9 40 0.0014 30.7 1.5 26 177-202 108-133 (183)
4 3c0u_A Uncharacterized protein 16.5 49 0.0017 30.1 1.4 20 356-375 108-127 (183)
5 3mx6_A Methionine aminopeptida 11.1 97 0.0033 27.7 1.8 20 157-178 239-258 (262)
6 2ot9_A Hypothetical protein; Y 9.4 60 0.0021 29.5 -0.3 24 177-202 106-129 (180)
7 2y8d_A Erythrocyte membrane pr 9.3 1.1E+02 0.0039 29.2 1.6 11 184-194 137-147 (306)
8 2x29_A Tumor necrosis factor l 9.1 1.8E+02 0.0062 26.2 2.7 28 140-173 48-75 (167)
9 3bqk_A Pfemp1 protein, erythro 9.1 1.2E+02 0.0041 29.7 1.7 11 363-373 185-195 (360)
10 2wau_A VAR2CSA, erythrocyte me 8.8 1.2E+02 0.0041 28.9 1.6 11 184-194 132-142 (302)
No 1
>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown funct; HET: MSE; 1.90A {Xanthomonas axonopodis PV} SCOP: c.52.1.33
Probab=22.57 E-value=32 Score=31.31 Aligned_cols=26 Identities=12% Similarity=0.408 Sum_probs=20.9
Q ss_pred ccChHHHHHHHHHhhhHHHHHhcccc
Q 017074 177 MFNKWQAQRWWAENYDRVMELYNVQR 202 (378)
Q Consensus 177 ~F~e~qAq~WW~eN~~rV~e~Ynv~~ 202 (378)
.|+...|+.||..|..++...-|+..
T Consensus 106 ~yg~~~~~vWw~~~~~kl~r~~nl~V 131 (182)
T 2g3w_A 106 GYGGQATETWWKKHANAMGRYRNLRV 131 (182)
T ss_dssp ECCTHHHHHHHHHHHHHHTTCSSEEE
T ss_pred ecCCchHHHHHHHhHHHHhCcCCcEE
Confidence 46777789999999999988766543
No 2
>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown funct; HET: MSE; 1.90A {Xanthomonas axonopodis PV} SCOP: c.52.1.33
Probab=22.02 E-value=39 Score=30.72 Aligned_cols=20 Identities=15% Similarity=0.662 Sum_probs=16.2
Q ss_pred ccchHHHHHHHHHHHhhhhh
Q 017074 356 KFGEMHARLWWEENRARIHE 375 (378)
Q Consensus 356 ~F~e~qA~~WW~eN~~RI~e 375 (378)
-|+..-|+.||.+|+.++..
T Consensus 106 ~yg~~~~~vWw~~~~~kl~r 125 (182)
T 2g3w_A 106 GYGGQATETWWKKHANAMGR 125 (182)
T ss_dssp ECCTHHHHHHHHHHHHHHTT
T ss_pred ecCCchHHHHHHHhHHHHhC
Confidence 36666789999999998864
No 3
>3c0u_A Uncharacterized protein YAEQ; PSI-2, protein structure initiative, center for structural genomics, MCSG, structural genomics, function; 2.70A {Escherichia coli}
Probab=18.95 E-value=40 Score=30.68 Aligned_cols=26 Identities=27% Similarity=0.659 Sum_probs=21.0
Q ss_pred ccChHHHHHHHHHhhhHHHHHhcccc
Q 017074 177 MFNKWQAQRWWAENYDRVMELYNVQR 202 (378)
Q Consensus 177 ~F~e~qAq~WW~eN~~rV~e~Ynv~~ 202 (378)
.|+...|+.||..|..++...-|+..
T Consensus 108 ~yg~~~~~vWw~~~~~kl~r~~nl~V 133 (183)
T 3c0u_A 108 TYNSRAAQIWWQQNQSKCVQFANLSV 133 (183)
T ss_dssp ECCHHHHHHHHHTTHHHHTTCTTEEE
T ss_pred ecCCccHHHHHHHhHHHHhCcCCcEE
Confidence 57777889999999999988766543
No 4
>3c0u_A Uncharacterized protein YAEQ; PSI-2, protein structure initiative, center for structural genomics, MCSG, structural genomics, function; 2.70A {Escherichia coli}
Probab=16.51 E-value=49 Score=30.09 Aligned_cols=20 Identities=20% Similarity=0.825 Sum_probs=16.4
Q ss_pred ccchHHHHHHHHHHHhhhhh
Q 017074 356 KFGEMHARLWWEENRARIHE 375 (378)
Q Consensus 356 ~F~e~qA~~WW~eN~~RI~e 375 (378)
-|+..-|+.||..|..++..
T Consensus 108 ~yg~~~~~vWw~~~~~kl~r 127 (183)
T 3c0u_A 108 TYNSRAAQIWWQQNQSKCVQ 127 (183)
T ss_dssp ECCHHHHHHHHHTTHHHHTT
T ss_pred ecCCccHHHHHHHhHHHHhC
Confidence 36666789999999998865
No 5
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for infectious disease, S aminopeptidase, protease, epidermic typhus; 1.70A {Rickettsia prowazekii} PDB: 3mr1_A
Probab=11.08 E-value=97 Score=27.66 Aligned_cols=20 Identities=10% Similarity=-0.089 Sum_probs=12.7
Q ss_pred EEEeCCCCCccceEEEeehhcc
Q 017074 157 TFVSLPRGGNDLKRIRFSRDMF 178 (378)
Q Consensus 157 Tl~~~p~G~k~LKRVRFSR~~F 178 (378)
|+++..+|...|-+ +.|+.|
T Consensus 239 ~v~Vt~~G~e~LT~--~p~~l~ 258 (262)
T 3mx6_A 239 TIGVTKDGFEIFTL--SPKKLD 258 (262)
T ss_dssp EEEECSSSEEESCC--CTTCCC
T ss_pred EEEECCCcCeECCC--CCcccC
Confidence 66677777777763 455554
No 6
>2ot9_A Hypothetical protein; YAEQ protein, PSI-2, protein structure initiative, MCSG, structural genomics, midwest center for S genomics; HET: SRT; 1.97A {Pseudomonas syringae PV} SCOP: c.52.1.33
Probab=9.35 E-value=60 Score=29.45 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=18.5
Q ss_pred ccChHHHHHHHHHhhhHHHHHhcccc
Q 017074 177 MFNKWQAQRWWAENYDRVMELYNVQR 202 (378)
Q Consensus 177 ~F~e~qAq~WW~eN~~rV~e~Ynv~~ 202 (378)
-|+ .|+.||..|..++...-|+..
T Consensus 106 ~yg--~~~vWw~~~~~kl~r~~nl~V 129 (180)
T 2ot9_A 106 AYG--SLRVWEGKVIPAIKNLKNVNI 129 (180)
T ss_dssp ECS--CCHHHHHHHGGGCTTCSSEEE
T ss_pred EcC--CcHHHHHHhHHHhhccCCcEE
Confidence 366 569999999999988766543
No 7
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A {Plasmodium falciparum}
Probab=9.30 E-value=1.1e+02 Score=29.18 Aligned_cols=11 Identities=27% Similarity=0.996 Sum_probs=0.0
Q ss_pred HHHHHHhhhHH
Q 017074 184 QRWWAENYDRV 194 (378)
Q Consensus 184 q~WW~eN~~rV 194 (378)
+.||.+|+..|
T Consensus 137 e~WW~~Nr~~V 147 (306)
T 2y8d_A 137 KKWWDMNKYHI 147 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhHHHH
No 8
>2x29_A Tumor necrosis factor ligand superfamily member 9; signal-anchor, cytokine, cell adhesion; 2.30A {Homo sapiens}
Probab=9.13 E-value=1.8e+02 Score=26.19 Aligned_cols=28 Identities=29% Similarity=0.577 Sum_probs=19.9
Q ss_pred cCCCCceEEeeCCceEEEEEeCCCCCccceEEEe
Q 017074 140 ENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRF 173 (378)
Q Consensus 140 ~~~~~EwieQ~EPGVyITl~~~p~G~k~LKRVRF 173 (378)
++..+|.+- .+||||-.|.-+ .||||--
T Consensus 48 d~~tkELvV-~~aGvYYVfl~L-----~L~rvv~ 75 (167)
T 2x29_A 48 KEDTKELVV-AKAGVYYVFFQM-----ELRRVVA 75 (167)
T ss_dssp TCCBSCEEE-CSCEEEEEEEEE-----EEEECST
T ss_pred cccccEEEe-ccCcEEEEEEEE-----eEEeEEe
Confidence 345567666 899999999877 4666643
No 9
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy, VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A 3bql_A 3cml_A 3cpz_A
Probab=9.09 E-value=1.2e+02 Score=29.73 Aligned_cols=11 Identities=18% Similarity=0.842 Sum_probs=0.0
Q ss_pred HHHHHHHHhhh
Q 017074 363 RLWWEENRARI 373 (378)
Q Consensus 363 ~~WW~eN~~RI 373 (378)
+.||..||..|
T Consensus 185 EdWW~~Nr~~V 195 (360)
T 3bqk_A 185 NAWWKGIEREM 195 (360)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 10
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin sulphate A, membrane protein DBL, malaria; 3.00A {Plasmodium falciparum}
Probab=8.82 E-value=1.2e+02 Score=28.87 Aligned_cols=11 Identities=27% Similarity=0.996 Sum_probs=0.0
Q ss_pred HHHHHHhhhHH
Q 017074 184 QRWWAENYDRV 194 (378)
Q Consensus 184 q~WW~eN~~rV 194 (378)
+.||.+|+..|
T Consensus 132 e~WW~~nr~~I 142 (302)
T 2wau_A 132 KKWWDMNKYHI 142 (302)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhHhh
Done!