Query 017075
Match_columns 378
No_of_seqs 270 out of 1747
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:31:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 2E-16 6.9E-21 127.4 6.7 80 294-374 11-90 (91)
2 1x4j_A Ring finger protein 38; 99.5 8.5E-15 2.9E-19 113.1 4.8 56 319-375 19-74 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 1.9E-14 6.4E-19 104.4 3.9 52 321-372 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 5.1E-14 1.8E-18 108.1 5.6 55 320-375 12-66 (74)
5 2kiz_A E3 ubiquitin-protein li 99.4 7.3E-14 2.5E-18 105.9 5.8 55 320-375 11-65 (69)
6 2ect_A Ring finger protein 126 99.4 5.4E-14 1.8E-18 109.0 5.0 56 320-376 12-67 (78)
7 2ecm_A Ring finger and CHY zin 99.4 9.8E-14 3.4E-18 100.4 4.5 51 322-372 4-54 (55)
8 1v87_A Deltex protein 2; ring- 99.4 2.7E-13 9.2E-18 112.2 7.2 68 301-374 9-95 (114)
9 2ecl_A Ring-box protein 2; RNF 99.4 9.4E-14 3.2E-18 109.7 3.0 53 322-374 14-77 (81)
10 3ng2_A RNF4, snurf, ring finge 99.4 1.9E-13 6.6E-18 103.5 3.9 57 320-376 7-66 (71)
11 2ea6_A Ring finger protein 4; 99.4 3.2E-13 1.1E-17 101.4 3.7 54 320-373 12-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.3 9.5E-13 3.2E-17 110.0 4.8 53 320-372 34-100 (106)
13 2xeu_A Ring finger protein 4; 99.3 9E-13 3.1E-17 97.5 3.6 54 322-375 2-58 (64)
14 2ct2_A Tripartite motif protei 99.3 2.7E-12 9.4E-17 100.8 5.9 57 319-375 11-70 (88)
15 2djb_A Polycomb group ring fin 99.3 4E-12 1.4E-16 97.4 5.1 53 320-375 12-64 (72)
16 4a0k_B E3 ubiquitin-protein li 99.2 3.3E-13 1.1E-17 115.0 -1.6 53 320-372 45-111 (117)
17 2ecn_A Ring finger protein 141 99.2 1.4E-12 4.9E-17 98.9 2.1 51 320-375 12-62 (70)
18 2d8s_A Cellular modulator of i 99.2 4.5E-12 1.5E-16 100.9 4.8 54 320-375 12-72 (80)
19 2d8t_A Dactylidin, ring finger 99.2 2.7E-12 9.4E-17 98.1 3.2 50 320-373 12-61 (71)
20 2ysl_A Tripartite motif-contai 99.2 9.1E-12 3.1E-16 94.9 4.7 53 320-376 17-72 (73)
21 1chc_A Equine herpes virus-1 r 99.2 8.6E-12 2.9E-16 93.9 4.1 49 322-373 4-52 (68)
22 2yur_A Retinoblastoma-binding 99.2 1.4E-11 4.9E-16 95.1 4.6 52 320-375 12-66 (74)
23 2csy_A Zinc finger protein 183 99.2 1.3E-11 4.6E-16 96.4 4.5 48 321-372 13-60 (81)
24 2ecy_A TNF receptor-associated 99.2 1.5E-11 5E-16 92.6 4.3 52 320-375 12-64 (66)
25 1g25_A CDK-activating kinase a 99.2 1.7E-11 6E-16 91.9 4.0 53 323-375 3-57 (65)
26 4ayc_A E3 ubiquitin-protein li 99.1 1.1E-11 3.8E-16 106.6 3.1 48 322-373 52-99 (138)
27 2ecw_A Tripartite motif-contai 99.1 3.8E-11 1.3E-15 93.1 5.1 52 320-375 16-73 (85)
28 4ap4_A E3 ubiquitin ligase RNF 99.1 1.8E-11 6.2E-16 102.1 3.2 55 321-375 5-62 (133)
29 1t1h_A Gspef-atpub14, armadill 99.1 3.4E-11 1.2E-15 93.1 4.4 52 320-375 5-57 (78)
30 2ecv_A Tripartite motif-contai 99.1 5.2E-11 1.8E-15 92.3 4.9 52 320-375 16-73 (85)
31 3lrq_A E3 ubiquitin-protein li 99.1 2.2E-11 7.4E-16 99.5 2.3 52 321-375 20-72 (100)
32 2egp_A Tripartite motif-contai 99.1 1.8E-11 6.1E-16 94.4 1.5 52 320-375 9-67 (79)
33 2ysj_A Tripartite motif-contai 99.1 1.2E-10 4E-15 86.7 4.7 44 320-367 17-63 (63)
34 2ckl_A Polycomb group ring fin 99.1 6.5E-11 2.2E-15 97.4 3.5 52 320-374 12-63 (108)
35 3ztg_A E3 ubiquitin-protein li 99.0 1.3E-10 4.4E-15 92.5 5.0 49 320-372 10-61 (92)
36 2y43_A E3 ubiquitin-protein li 99.0 5.6E-11 1.9E-15 96.2 2.6 49 322-373 21-69 (99)
37 2ecj_A Tripartite motif-contai 99.0 1.7E-10 5.7E-15 83.9 4.1 44 320-367 12-58 (58)
38 4ap4_A E3 ubiquitin ligase RNF 99.0 6.7E-11 2.3E-15 98.6 2.2 55 321-375 70-127 (133)
39 2ct0_A Non-SMC element 1 homol 99.0 2.1E-10 7.2E-15 90.4 4.7 52 321-375 13-66 (74)
40 3fl2_A E3 ubiquitin-protein li 99.0 1.2E-10 4.2E-15 97.9 3.2 48 322-373 51-99 (124)
41 1jm7_A BRCA1, breast cancer ty 99.0 2.8E-10 9.6E-15 93.2 4.6 49 323-375 21-72 (112)
42 2ckl_B Ubiquitin ligase protei 99.0 2.5E-10 8.5E-15 100.5 4.2 49 322-373 53-102 (165)
43 1z6u_A NP95-like ring finger p 98.9 3.3E-10 1.1E-14 99.4 3.3 49 322-374 77-126 (150)
44 3hct_A TNF receptor-associated 98.9 3.1E-10 1.1E-14 95.0 2.6 51 320-374 15-66 (118)
45 3l11_A E3 ubiquitin-protein li 98.9 1.6E-10 5.4E-15 95.9 -0.4 47 322-372 14-61 (115)
46 1e4u_A Transcriptional repress 98.9 1.2E-09 4E-14 86.4 4.4 56 320-375 8-64 (78)
47 1rmd_A RAG1; V(D)J recombinati 98.9 7.8E-10 2.7E-14 91.8 3.0 50 322-375 22-72 (116)
48 2kr4_A Ubiquitin conjugation f 98.9 1.2E-09 4.2E-14 87.0 3.9 50 321-374 12-61 (85)
49 2kre_A Ubiquitin conjugation f 98.8 1.8E-09 6.1E-14 88.9 4.2 51 321-375 27-77 (100)
50 1wgm_A Ubiquitin conjugation f 98.8 2.1E-09 7.2E-14 88.2 4.4 51 321-375 20-71 (98)
51 2vje_A E3 ubiquitin-protein li 98.8 1.4E-09 4.7E-14 82.4 2.8 49 322-372 7-56 (64)
52 3knv_A TNF receptor-associated 98.8 1.3E-09 4.5E-14 94.8 2.5 49 320-372 28-77 (141)
53 1bor_A Transcription factor PM 98.8 2.1E-09 7.1E-14 79.0 2.1 48 321-375 4-51 (56)
54 2y1n_A E3 ubiquitin-protein li 98.8 3E-09 1E-13 106.9 4.0 47 323-373 332-379 (389)
55 1jm7_B BARD1, BRCA1-associated 98.8 1.6E-09 5.5E-14 90.4 1.6 49 322-375 21-69 (117)
56 2vje_B MDM4 protein; proto-onc 98.7 4.3E-09 1.5E-13 79.4 3.6 49 322-372 6-55 (63)
57 2c2l_A CHIP, carboxy terminus 98.7 6.4E-09 2.2E-13 96.6 3.9 50 321-374 206-256 (281)
58 4ic3_A E3 ubiquitin-protein li 98.6 4.1E-09 1.4E-13 81.7 0.7 43 322-372 23-66 (74)
59 3hcs_A TNF receptor-associated 98.6 1.2E-08 4.2E-13 89.9 2.6 51 320-374 15-66 (170)
60 2yu4_A E3 SUMO-protein ligase 98.6 1.4E-08 4.8E-13 82.1 2.4 47 321-370 5-59 (94)
61 3k1l_B Fancl; UBC, ring, RWD, 98.6 1.2E-08 4.1E-13 101.3 1.6 52 321-372 306-372 (381)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.5 8.3E-08 2.8E-12 72.3 3.7 48 321-372 4-58 (60)
63 2ecg_A Baculoviral IAP repeat- 98.5 6.1E-08 2.1E-12 74.9 2.9 43 323-373 25-68 (75)
64 2f42_A STIP1 homology and U-bo 98.4 7.6E-08 2.6E-12 87.4 3.1 50 321-374 104-154 (179)
65 2ea5_A Cell growth regulator w 98.4 1.8E-07 6.2E-12 71.7 4.1 44 322-373 14-58 (68)
66 1wim_A KIAA0161 protein; ring 98.4 1.1E-07 3.7E-12 76.3 2.2 48 322-370 4-61 (94)
67 2yho_A E3 ubiquitin-protein li 98.3 8.2E-08 2.8E-12 75.6 0.1 42 323-372 18-60 (79)
68 2bay_A PRE-mRNA splicing facto 98.3 1.9E-07 6.4E-12 70.4 1.7 49 324-375 4-52 (61)
69 3htk_C E3 SUMO-protein ligase 98.2 4.1E-07 1.4E-11 87.2 2.7 51 321-374 179-233 (267)
70 3t6p_A Baculoviral IAP repeat- 98.2 2.2E-07 7.4E-12 92.0 0.5 43 322-372 294-337 (345)
71 3vk6_A E3 ubiquitin-protein li 97.9 7.3E-06 2.5E-10 68.1 3.9 45 325-372 3-48 (101)
72 3nw0_A Non-structural maintena 97.5 6.3E-05 2.2E-09 70.8 3.8 50 322-374 179-230 (238)
73 2ko5_A Ring finger protein Z; 94.8 0.0079 2.7E-07 49.4 1.3 47 322-374 27-74 (99)
74 2lri_C Autoimmune regulator; Z 92.7 0.065 2.2E-06 40.8 2.8 49 321-373 10-62 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 92.2 0.064 2.2E-06 42.7 2.3 36 322-358 2-38 (101)
76 1we9_A PHD finger family prote 88.9 0.1 3.5E-06 38.7 0.6 50 321-370 4-58 (64)
77 1wep_A PHF8; structural genomi 87.0 0.53 1.8E-05 36.5 3.8 49 323-372 12-65 (79)
78 2l5u_A Chromodomain-helicase-D 86.6 0.36 1.2E-05 35.8 2.5 47 320-370 8-58 (61)
79 2k16_A Transcription initiatio 86.0 0.22 7.4E-06 38.1 1.0 50 322-372 17-70 (75)
80 1wil_A KIAA1045 protein; ring 82.6 1.6 5.4E-05 35.2 4.6 37 319-357 11-47 (89)
81 2kgg_A Histone demethylase jar 81.3 1.2 3.9E-05 31.9 3.1 44 325-368 4-52 (52)
82 2xb1_A Pygopus homolog 2, B-ce 81.3 0.25 8.5E-06 40.7 -0.5 50 323-372 3-63 (105)
83 1mm2_A MI2-beta; PHD, zinc fin 81.1 0.36 1.2E-05 35.8 0.4 48 321-372 7-58 (61)
84 3i2d_A E3 SUMO-protein ligase 77.8 1.3 4.5E-05 44.2 3.3 49 323-374 249-301 (371)
85 2vpb_A Hpygo1, pygopus homolog 75.6 1.8 6.1E-05 32.7 2.8 35 321-355 6-41 (65)
86 2yql_A PHD finger protein 21A; 75.3 0.34 1.2E-05 35.2 -1.3 46 320-369 6-55 (56)
87 2puy_A PHD finger protein 21A; 74.7 0.24 8.2E-06 36.5 -2.3 48 322-373 4-55 (60)
88 4fo9_A E3 SUMO-protein ligase 74.1 2 6.9E-05 42.7 3.5 49 323-374 215-267 (360)
89 1f62_A Transcription factor WS 73.9 1.2 4.2E-05 31.3 1.4 44 325-369 2-49 (51)
90 1wee_A PHD finger family prote 73.4 0.45 1.5E-05 36.2 -1.1 51 322-373 15-69 (72)
91 2l43_A N-teminal domain from h 73.3 0.89 3.1E-05 36.2 0.6 53 321-373 23-78 (88)
92 2ri7_A Nucleosome-remodeling f 73.0 0.68 2.3E-05 40.5 -0.1 47 322-369 7-58 (174)
93 1xwh_A Autoimmune regulator; P 72.8 0.62 2.1E-05 34.9 -0.4 47 321-371 6-56 (66)
94 2ku3_A Bromodomain-containing 72.5 1 3.5E-05 34.6 0.8 50 321-370 14-66 (71)
95 1fp0_A KAP-1 corepressor; PHD 71.4 1.9 6.4E-05 34.7 2.1 48 320-371 22-73 (88)
96 1weu_A Inhibitor of growth fam 71.0 0.92 3.2E-05 36.7 0.2 44 323-371 36-86 (91)
97 3v43_A Histone acetyltransfera 68.0 6.5 0.00022 32.1 4.8 34 322-355 4-42 (112)
98 3m62_A Ubiquitin conjugation f 67.5 2.8 9.6E-05 46.6 3.1 49 322-374 890-939 (968)
99 2lv9_A Histone-lysine N-methyl 67.4 1.6 5.6E-05 35.2 1.0 46 323-370 28-76 (98)
100 3v43_A Histone acetyltransfera 65.6 1.4 4.9E-05 36.1 0.3 45 325-369 63-111 (112)
101 1wen_A Inhibitor of growth fam 64.9 3.8 0.00013 31.3 2.6 45 322-371 15-66 (71)
102 3o70_A PHD finger protein 13; 62.2 1.4 4.8E-05 33.5 -0.4 47 321-369 17-66 (68)
103 1wew_A DNA-binding family prot 59.4 2.9 0.0001 32.2 1.0 50 322-373 15-75 (78)
104 2e6r_A Jumonji/ARID domain-con 59.3 0.82 2.8E-05 36.7 -2.2 50 320-370 13-66 (92)
105 1wem_A Death associated transc 58.9 3.7 0.00013 31.3 1.5 47 324-372 17-72 (76)
106 2lbm_A Transcriptional regulat 58.7 10 0.00035 32.9 4.5 47 320-370 60-117 (142)
107 2cs3_A Protein C14ORF4, MY039 57.8 5.9 0.0002 31.7 2.5 39 321-360 13-52 (93)
108 2yt5_A Metal-response element- 56.7 5 0.00017 29.5 1.9 51 321-371 4-62 (66)
109 2ysm_A Myeloid/lymphoid or mix 56.3 3 0.0001 33.9 0.7 38 321-359 5-42 (111)
110 1wev_A Riken cDNA 1110020M19; 55.6 1.7 5.8E-05 34.5 -0.9 53 322-374 15-76 (88)
111 2kwj_A Zinc finger protein DPF 55.5 6.6 0.00023 32.3 2.6 34 324-357 2-41 (114)
112 4gne_A Histone-lysine N-methyl 51.8 9.4 0.00032 31.5 3.0 47 320-372 12-64 (107)
113 2rsd_A E3 SUMO-protein ligase 51.6 1.2 4E-05 33.6 -2.4 44 324-369 11-64 (68)
114 3kqi_A GRC5, PHD finger protei 51.6 3.7 0.00013 31.3 0.4 49 323-371 9-62 (75)
115 1weo_A Cellulose synthase, cat 49.7 19 0.00066 29.2 4.4 50 323-372 16-69 (93)
116 3ql9_A Transcriptional regulat 48.8 19 0.00066 30.7 4.5 47 320-370 54-111 (129)
117 2e6s_A E3 ubiquitin-protein li 48.6 2.8 9.5E-05 32.6 -0.7 45 324-369 27-76 (77)
118 3mpx_A FYVE, rhogef and PH dom 48.5 3.7 0.00013 40.2 0.0 50 322-371 374-430 (434)
119 3c6w_A P28ING5, inhibitor of g 47.3 3.6 0.00012 30.3 -0.2 42 323-369 9-57 (59)
120 3asl_A E3 ubiquitin-protein li 46.7 3 0.0001 31.7 -0.8 45 325-370 20-69 (70)
121 1y02_A CARP2, FYVE-ring finger 45.9 2.5 8.5E-05 35.7 -1.5 49 322-370 18-66 (120)
122 1zbd_B Rabphilin-3A; G protein 45.9 9.4 0.00032 32.6 2.1 35 321-355 53-88 (134)
123 2vnf_A ING 4, P29ING4, inhibit 45.7 3.8 0.00013 30.1 -0.3 42 323-369 10-58 (60)
124 2cu8_A Cysteine-rich protein 2 44.6 13 0.00044 27.4 2.5 40 323-373 9-48 (76)
125 3a1b_A DNA (cytosine-5)-methyl 43.9 15 0.00053 32.4 3.3 47 319-369 75-133 (159)
126 2pv0_B DNA (cytosine-5)-methyl 43.8 17 0.00059 36.4 4.0 47 320-370 90-148 (386)
127 2co8_A NEDD9 interacting prote 43.5 14 0.00048 28.0 2.6 43 321-374 13-55 (82)
128 3shb_A E3 ubiquitin-protein li 43.3 3.3 0.00011 32.3 -1.1 45 325-370 28-77 (77)
129 3t7l_A Zinc finger FYVE domain 41.5 14 0.00048 29.1 2.4 50 322-371 19-74 (90)
130 1x4k_A Skeletal muscle LIM-pro 39.9 19 0.00064 26.0 2.7 40 324-373 6-45 (72)
131 2yw8_A RUN and FYVE domain-con 38.7 16 0.00053 28.3 2.2 52 321-372 17-74 (82)
132 2dj7_A Actin-binding LIM prote 38.5 15 0.00051 27.8 2.0 40 322-372 14-53 (80)
133 1wyh_A SLIM 2, skeletal muscle 38.1 16 0.00055 26.4 2.1 41 323-373 5-45 (72)
134 2gmg_A Hypothetical protein PF 37.6 7.5 0.00026 32.3 0.2 24 344-372 72-95 (105)
135 1wfk_A Zinc finger, FYVE domai 37.1 21 0.00071 28.1 2.7 37 321-357 7-43 (88)
136 1z2q_A LM5-1; membrane protein 35.9 20 0.00069 27.7 2.5 51 321-371 19-77 (84)
137 1joc_A EEA1, early endosomal a 35.9 18 0.00061 30.3 2.3 36 322-357 68-103 (125)
138 1vfy_A Phosphatidylinositol-3- 35.0 21 0.00072 26.9 2.4 35 323-357 11-45 (73)
139 1dvp_A HRS, hepatocyte growth 34.9 15 0.00051 33.2 1.8 37 322-358 160-196 (220)
140 1x63_A Skeletal muscle LIM-pro 34.9 24 0.00084 26.1 2.7 41 323-373 15-55 (82)
141 2o35_A Hypothetical protein DU 34.9 14 0.00049 30.5 1.4 12 349-360 43-54 (105)
142 2g6q_A Inhibitor of growth pro 34.8 7.3 0.00025 28.9 -0.3 42 323-369 11-59 (62)
143 3fyb_A Protein of unknown func 34.7 14 0.00049 30.4 1.4 11 349-359 42-52 (104)
144 3zyq_A Hepatocyte growth facto 34.4 16 0.00054 33.4 1.9 51 322-372 163-221 (226)
145 3ask_A E3 ubiquitin-protein li 34.0 9.2 0.00031 35.7 0.2 47 323-370 174-225 (226)
146 1x4u_A Zinc finger, FYVE domai 33.4 23 0.0008 27.3 2.4 37 321-357 12-48 (84)
147 3kv5_D JMJC domain-containing 33.2 7.2 0.00025 40.0 -0.7 47 324-370 37-88 (488)
148 1iml_A CRIP, cysteine rich int 33.0 14 0.00048 27.3 1.0 44 323-371 27-71 (76)
149 2d8v_A Zinc finger FYVE domain 33.0 21 0.00071 27.4 2.0 32 321-357 6-38 (67)
150 1z60_A TFIIH basal transcripti 32.5 22 0.00074 26.5 2.0 42 324-367 16-58 (59)
151 1x61_A Thyroid receptor intera 32.2 30 0.001 25.0 2.7 28 324-353 6-33 (72)
152 1a7i_A QCRP2 (LIM1); LIM domai 32.0 13 0.00043 27.9 0.6 40 323-373 7-46 (81)
153 1g47_A Pinch protein; LIM doma 31.7 27 0.00092 25.5 2.5 42 322-373 10-51 (77)
154 2zet_C Melanophilin; complex, 31.6 19 0.00066 31.4 1.9 47 322-369 67-116 (153)
155 2pk7_A Uncharacterized protein 31.5 11 0.00039 28.7 0.3 17 356-372 3-19 (69)
156 2jvx_A NF-kappa-B essential mo 31.0 11 0.00037 24.2 0.1 13 361-373 3-15 (28)
157 1x4l_A Skeletal muscle LIM-pro 30.1 32 0.0011 24.9 2.6 40 323-372 5-46 (72)
158 2d8y_A Eplin protein; LIM doma 29.8 29 0.00099 26.5 2.4 39 323-372 15-53 (91)
159 2jmi_A Protein YNG1, ING1 homo 29.7 11 0.00039 30.1 0.1 43 322-369 25-75 (90)
160 2jne_A Hypothetical protein YF 29.6 16 0.00054 30.1 0.9 39 324-371 33-71 (101)
161 3mjh_B Early endosome antigen 29.4 15 0.00053 24.4 0.6 10 363-372 7-16 (34)
162 2ysm_A Myeloid/lymphoid or mix 29.2 9 0.00031 31.0 -0.6 46 325-371 56-105 (111)
163 1x68_A FHL5 protein; four-and- 28.1 32 0.0011 25.2 2.4 39 324-372 6-46 (76)
164 3f6q_B LIM and senescent cell 27.7 32 0.0011 24.4 2.3 42 322-373 10-51 (72)
165 2l3k_A Rhombotin-2, linker, LI 27.2 21 0.00071 29.1 1.2 34 324-359 37-70 (123)
166 1zfo_A LAsp-1; LIM domain, zin 27.1 21 0.00072 22.7 1.0 28 324-354 4-31 (31)
167 2dar_A PDZ and LIM domain prot 25.8 36 0.0012 25.9 2.3 40 322-373 24-63 (90)
168 2jny_A Uncharacterized BCR; st 25.3 10 0.00035 28.9 -0.9 15 357-371 6-20 (67)
169 2d8x_A Protein pinch; LIM doma 24.7 41 0.0014 24.1 2.4 38 324-373 6-43 (70)
170 1nyp_A Pinch protein; LIM doma 24.7 22 0.00076 25.3 0.8 39 323-373 5-43 (66)
171 1x64_A Alpha-actinin-2 associa 24.2 44 0.0015 25.3 2.6 40 322-373 24-63 (89)
172 2kwj_A Zinc finger protein DPF 24.2 4.7 0.00016 33.2 -3.3 46 325-371 60-109 (114)
173 2l4z_A DNA endonuclease RBBP8, 23.9 28 0.00097 28.6 1.5 39 323-372 61-99 (123)
174 3o7a_A PHD finger protein 13 v 22.7 15 0.00051 25.9 -0.4 42 327-369 7-51 (52)
175 2cor_A Pinch protein; LIM doma 22.3 44 0.0015 24.9 2.2 40 322-373 14-53 (79)
176 1v6g_A Actin binding LIM prote 22.3 40 0.0014 25.0 1.9 37 324-372 16-52 (81)
177 1m3v_A FLIN4, fusion of the LI 22.1 74 0.0025 25.6 3.7 41 320-371 2-42 (122)
178 1x62_A C-terminal LIM domain p 21.2 48 0.0016 24.5 2.2 39 322-372 14-52 (79)
179 1yuz_A Nigerythrin; rubrythrin 21.1 39 0.0013 30.4 1.9 25 339-370 171-195 (202)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=127.42 Aligned_cols=80 Identities=24% Similarity=0.472 Sum_probs=66.4
Q ss_pred CCCCCCCCHHHHHhhccceeeecccccCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 294 GSVSTGLSEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 294 g~v~tGlSee~I~~ll~~~~~~~~~~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
+....|++++.|..++...+.........+..|+||+++|..++.+..+ +|+|.||..||.+||+.+.+||+||+.+.+
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3456889999999988766543334455677899999999998888777 799999999999999999999999999865
Q ss_pred C
Q 017075 374 D 374 (378)
Q Consensus 374 ~ 374 (378)
.
T Consensus 90 ~ 90 (91)
T 2l0b_A 90 P 90 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=8.5e-15 Score=113.10 Aligned_cols=56 Identities=32% Similarity=0.885 Sum_probs=49.4
Q ss_pred ccCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 319 QMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 319 ~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
...++..|+||+++|..++.+..+ +|+|.||..||.+||+.+..||+||+.+.+..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 345667899999999998888777 79999999999999999999999999987653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.47 E-value=1.9e-14 Score=104.35 Aligned_cols=52 Identities=31% Similarity=0.952 Sum_probs=46.4
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
.++..|+||+++|..++.+..++.|+|.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567899999999998888777459999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.1e-14 Score=108.07 Aligned_cols=55 Identities=35% Similarity=0.958 Sum_probs=48.3
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
...+..|+||++.|..++.+..+ +|+|.||..||.+|++.+..||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 34567899999999998888777 79999999999999999999999999986543
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=7.3e-14 Score=105.85 Aligned_cols=55 Identities=35% Similarity=0.822 Sum_probs=47.8
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
...+..|+||++.|..++.+..+ +|+|.||..||.+|++.+..||+||+.+....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 34567899999999887777777 89999999999999999999999999986543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=5.4e-14 Score=109.00 Aligned_cols=56 Identities=30% Similarity=0.794 Sum_probs=48.9
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE 376 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~e 376 (378)
...+..|+||++.|..++.+..+ +|+|.||..||.+|++.+..||+||+.+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 34567899999999988777777 899999999999999999999999999876543
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.42 E-value=9.8e-14 Score=100.36 Aligned_cols=51 Identities=31% Similarity=0.677 Sum_probs=44.3
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
.+..|+||++.|..++...++++|+|.||..||.+|++.+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467899999999876655555689999999999999999999999999874
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.41 E-value=2.7e-13 Score=112.18 Aligned_cols=68 Identities=28% Similarity=0.596 Sum_probs=49.2
Q ss_pred CHHHHHhhccceeeecccccCCCCccceecccccCCC--------------ceeeecccCCcccHHHHHHHHh-----cC
Q 017075 301 SEDLISRCLTESIYCSADQMQEEGNCVICLEEYKNMD--------------DVGTLKSCGHDYHVTCIKKWLS-----MK 361 (378)
Q Consensus 301 See~I~~ll~~~~~~~~~~~~ed~~C~ICLeef~~ge--------------~v~~LlpCgH~FH~~CI~kWLk-----~k 361 (378)
.++.+.++..... ...+..|+|||+.|..+. .+.++++|+|.||..||.+||. .+
T Consensus 9 p~~~i~~~~~~~~------~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~ 82 (114)
T 1v87_A 9 PEQVIRKYTEELK------VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGS 82 (114)
T ss_dssp HHHHHHHHEEECS------SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSC
T ss_pred hHHHHHHHHHhcc------CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCC
Confidence 3455655443221 224568999999997653 3445669999999999999994 46
Q ss_pred CCCCccCcccCCC
Q 017075 362 NVCPICKASVMAD 374 (378)
Q Consensus 362 ~sCPICR~~l~~~ 374 (378)
.+||+||+.+...
T Consensus 83 ~~CP~CR~~~~~~ 95 (114)
T 1v87_A 83 LQCPSCKTIYGEK 95 (114)
T ss_dssp CBCTTTCCBSSSC
T ss_pred CcCCCCCCccCCC
Confidence 7899999987543
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=9.4e-14 Score=109.74 Aligned_cols=53 Identities=28% Similarity=0.716 Sum_probs=42.6
Q ss_pred CCCccceeccccc-----------CCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCC
Q 017075 322 EEGNCVICLEEYK-----------NMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 374 (378)
Q Consensus 322 ed~~C~ICLeef~-----------~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~ 374 (378)
++..|+||+++|. .++.++++++|+|.||..||.+||+.+++||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 4556777777764 4455777767999999999999999999999999987543
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.38 E-value=1.9e-13 Score=103.50 Aligned_cols=57 Identities=23% Similarity=0.612 Sum_probs=46.8
Q ss_pred cCCCCccceecccccCC---CceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCCC
Q 017075 320 MQEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADSE 376 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~g---e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~e 376 (378)
..++..|+||++.+.+. ....++++|+|.||..||.+|++.+..||+||+.+...+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 34567899999999763 2333455899999999999999999999999999976654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.2e-13 Score=101.35 Aligned_cols=54 Identities=24% Similarity=0.661 Sum_probs=44.2
Q ss_pred cCCCCccceecccccCC---CceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 320 MQEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~g---e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
..+...|+||++.|.+. ....++++|+|.||..||.+|++.+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999999864 2233445899999999999999999999999998853
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.32 E-value=9.5e-13 Score=110.04 Aligned_cols=53 Identities=26% Similarity=0.655 Sum_probs=43.8
Q ss_pred cCCCCccceecccccCC--------------CceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 320 MQEEGNCVICLEEYKNM--------------DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~g--------------e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
..++..|+||++.|... +.+.++++|+|.||..||.+||+.+.+||+||+++.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 34678899999999864 123445589999999999999999999999999853
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.30 E-value=9e-13 Score=97.50 Aligned_cols=54 Identities=24% Similarity=0.669 Sum_probs=44.3
Q ss_pred CCCccceecccccCC---CceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 322 EEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 322 ed~~C~ICLeef~~g---e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
++..|+||++.+.++ ....++++|+|.||..||.+|++.+..||+||+.+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 457899999999863 223334489999999999999999999999999987654
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.7e-12 Score=100.77 Aligned_cols=57 Identities=28% Similarity=0.587 Sum_probs=46.6
Q ss_pred ccCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC---CCCCccCcccCCCC
Q 017075 319 QMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK---NVCPICKASVMADS 375 (378)
Q Consensus 319 ~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k---~sCPICR~~l~~~~ 375 (378)
...+...|+||++.|...+...++++|+|.||..||.+|++.+ ..||+||+.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 3455678999999999876534455899999999999999876 78999999886554
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4e-12 Score=97.40 Aligned_cols=53 Identities=25% Similarity=0.505 Sum_probs=44.5
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
..+...|+||++.+.+. ..+++|+|.||..||.+|++.+..||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 34567899999999863 334489999999999999999999999999987654
No 16
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.25 E-value=3.3e-13 Score=115.02 Aligned_cols=53 Identities=26% Similarity=0.655 Sum_probs=2.1
Q ss_pred cCCCCccceecccccCC-------------C-ceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 320 MQEEGNCVICLEEYKNM-------------D-DVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~g-------------e-~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
...++.|+||++.|... + .+.++++|+|.||..||.+||+.+.+||+||+++.
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCCC---------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 34568899999999752 2 23344589999999999999999999999999854
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.4e-12 Score=98.91 Aligned_cols=51 Identities=29% Similarity=0.839 Sum_probs=43.9
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
..+...|+||++.+.. ..+ +|+|.||..||.+|++.+..||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 3456789999999886 344 89999999999999999999999999987654
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.5e-12 Score=100.93 Aligned_cols=54 Identities=22% Similarity=0.612 Sum_probs=44.7
Q ss_pred cCCCCccceecccccCCCceeeecccC-----CcccHHHHHHHHhcC--CCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCG-----HDYHVTCIKKWLSMK--NVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCg-----H~FH~~CI~kWLk~k--~sCPICR~~l~~~~ 375 (378)
..++..|.||+++|..++.+ ++ ||. |.||..||++||..+ .+||+||+.+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-IT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-EC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Ee-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 44567899999999877665 44 896 999999999999875 48999999986544
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.7e-12 Score=98.09 Aligned_cols=50 Identities=22% Similarity=0.526 Sum_probs=42.6
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
..++..|+||++.+.+. ..+ +|+|.||..||.+|++.+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSL-PCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCC---EEc-cCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34567899999998753 344 899999999999999999999999998854
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.1e-12 Score=94.88 Aligned_cols=53 Identities=36% Similarity=0.702 Sum_probs=43.4
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHh---cCCCCCccCcccCCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPICKASVMADSE 376 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk---~k~sCPICR~~l~~~~e 376 (378)
..++..|+||++.+.+ ...+ +|+|.||..||.+|++ .+..||+||+.+..++.
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3456789999999985 3344 8999999999999997 35689999999876654
No 21
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=8.6e-12 Score=93.93 Aligned_cols=49 Identities=35% Similarity=0.838 Sum_probs=41.5
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
.+..|+||++.+.++ +..+ +|+|.||..||.+|++.+..||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMAL-PCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEET-TTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEec-CCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 457899999998753 3344 899999999999999999999999998753
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.18 E-value=1.4e-11 Score=95.08 Aligned_cols=52 Identities=25% Similarity=0.637 Sum_probs=42.3
Q ss_pred cCCCCccceecccccCCCceeeecc-cCCcccHHHHHHHHhcC--CCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKS-CGHDYHVTCIKKWLSMK--NVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~Llp-CgH~FH~~CI~kWLk~k--~sCPICR~~l~~~~ 375 (378)
..++..|+||++.|.++ ..+ + |+|.||..||.+|++.+ ..||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCC---eEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34567899999999864 234 7 99999999999999875 68999999865543
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=96.38 Aligned_cols=48 Identities=21% Similarity=0.491 Sum_probs=41.3
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
.....|+||++.+.++ .+ ++|+|.||..||.+|++....||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VV-TKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eE-ccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4467899999999763 23 489999999999999999999999999875
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=92.60 Aligned_cols=52 Identities=23% Similarity=0.569 Sum_probs=42.5
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHh-cCCCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-MKNVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-~k~sCPICR~~l~~~~ 375 (378)
..+...|+||++.+.++. .+ +|+|.||..||.+|++ .+..||+||+.+..++
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPK---QT-ECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSCC---CC-SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCee---EC-CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 345678999999998652 23 8999999999999995 5678999999987654
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=1.7e-11 Score=91.90 Aligned_cols=53 Identities=21% Similarity=0.528 Sum_probs=43.5
Q ss_pred CCccceecc-cccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCCC
Q 017075 323 EGNCVICLE-EYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS 375 (378)
Q Consensus 323 d~~C~ICLe-ef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~~ 375 (378)
+..|+||++ .+.++....++++|||.||..||.+|+.. +..||+||+.+...+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 568999999 78776654455589999999999999765 467999999987654
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.15 E-value=1.1e-11 Score=106.60 Aligned_cols=48 Identities=35% Similarity=0.888 Sum_probs=41.5
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
++..|+||++.|.++ ..+ +|||.||..||.+|+..+..||+||+.+..
T Consensus 52 ~~~~C~iC~~~~~~~---~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTL-NCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEE-TTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCc---eEC-CCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 456899999999853 344 899999999999999999999999998854
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=3.8e-11 Score=93.09 Aligned_cols=52 Identities=33% Similarity=0.693 Sum_probs=43.1
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc------CCCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM------KNVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~------k~sCPICR~~l~~~~ 375 (378)
..++..|+||++.+..+ + . ++|+|.||..||.+|+.. ...||+||+.+..++
T Consensus 16 ~~~~~~C~IC~~~~~~p--~-~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP--V-S-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCSSC--E-E-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhCcc--e-e-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 34567899999999864 2 3 489999999999999987 678999999987553
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=1.8e-11 Score=102.09 Aligned_cols=55 Identities=24% Similarity=0.665 Sum_probs=44.8
Q ss_pred CCCCccceecccccCC---CceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 321 QEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 321 ~ed~~C~ICLeef~~g---e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
.++..|+||++.|.++ ....++++|||.||..||.+||+.+.+||+||+.+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3467899999999864 233344489999999999999999999999999886543
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.12 E-value=3.4e-11 Score=93.09 Aligned_cols=52 Identities=29% Similarity=0.553 Sum_probs=43.3
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~~ 375 (378)
..++..|+||++.+.++ ..+ +|||.||..||.+|+.. +..||+||+.+..++
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccccCC---EEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 34578899999999864 334 89999999999999987 788999999886543
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.2e-11 Score=92.28 Aligned_cols=52 Identities=31% Similarity=0.724 Sum_probs=43.2
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc------CCCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM------KNVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~------k~sCPICR~~l~~~~ 375 (378)
..+...|+||++.+.+. ..+ +|+|.||..||.+|+.. ...||+||+.+..++
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccCCc---eeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 34567899999999864 234 89999999999999987 778999999987554
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=2.2e-11 Score=99.49 Aligned_cols=52 Identities=27% Similarity=0.716 Sum_probs=42.9
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC-CCCCccCcccCCCC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMADS 375 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-~sCPICR~~l~~~~ 375 (378)
.++..|+||++.|.+ ...+++|||.||..||.+|++.+ ..||+||+.+..++
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 346789999999985 33425899999999999999987 69999999986543
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.09 E-value=1.8e-11 Score=94.40 Aligned_cols=52 Identities=37% Similarity=0.650 Sum_probs=42.8
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-------CCCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-------KNVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-------k~sCPICR~~l~~~~ 375 (378)
..++..|+||++.|.++ ..+ +|+|.||..||.+|++. ...||+||+.+..++
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cccCCCCcCCCcccCCe---eEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 34567899999999864 234 89999999999999986 568999999986543
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=86.70 Aligned_cols=44 Identities=36% Similarity=0.781 Sum_probs=36.7
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHh---cCCCCCcc
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPIC 367 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk---~k~sCPIC 367 (378)
..++..|+||++.+.++ ..+ +|+|.||..||.+|++ .+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44567899999999864 334 8999999999999998 45689998
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=6.5e-11 Score=97.35 Aligned_cols=52 Identities=29% Similarity=0.668 Sum_probs=43.7
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 374 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~ 374 (378)
..++..|+||++.+.++ ..+++|||.||..||.+|+..+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 34578899999999853 34448999999999999999999999999988653
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=92.49 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=40.7
Q ss_pred cCCCCccceecccccCCCceeeecc-cCCcccHHHHHHHHhcC--CCCCccCcccC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKS-CGHDYHVTCIKKWLSMK--NVCPICKASVM 372 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~Llp-CgH~FH~~CI~kWLk~k--~sCPICR~~l~ 372 (378)
..++..|+||++.|.++ ..+ + |||.||..||.+|+... ..||+||+.+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45678899999999864 234 7 99999999999999754 58999999873
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.04 E-value=5.6e-11 Score=96.16 Aligned_cols=49 Identities=35% Similarity=0.763 Sum_probs=41.9
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
+...|+||++.|.++ ..+++|||.||..||.+|+..+..||+||+.+..
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999863 3344899999999999999999999999998864
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.7e-10 Score=83.91 Aligned_cols=44 Identities=36% Similarity=0.982 Sum_probs=36.1
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHh---cCCCCCcc
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPIC 367 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk---~k~sCPIC 367 (378)
..++..|+||++.+.++ ++++|+|.||..||.+|+. .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999875 2348999999999999954 46789998
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.02 E-value=6.7e-11 Score=98.62 Aligned_cols=55 Identities=24% Similarity=0.665 Sum_probs=44.9
Q ss_pred CCCCccceecccccCC---CceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 321 QEEGNCVICLEEYKNM---DDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 321 ~ed~~C~ICLeef~~g---e~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
.+...|+||++.|... ....++++|+|.||..||++||+.+++||+||+.+..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 4567899999999763 223344489999999999999999999999999987543
No 39
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=2.1e-10 Score=90.42 Aligned_cols=52 Identities=21% Similarity=0.515 Sum_probs=42.9
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC--CCCCccCcccCCCC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPICKASVMADS 375 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k--~sCPICR~~l~~~~ 375 (378)
.....|.||.+.+..++.. ..|+|.||..||.+||+.+ .+||+||+++..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3457899999999876433 2799999999999999987 88999999876443
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.00 E-value=1.2e-10 Score=97.95 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=40.6
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC-CCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~-sCPICR~~l~~ 373 (378)
++..|+||++.|..+ ..+ +|||.||..||..|+..+. .||+||+.+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 457899999999854 334 8999999999999998654 89999999865
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=2.8e-10 Score=93.19 Aligned_cols=49 Identities=35% Similarity=0.661 Sum_probs=40.8
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC---CCCccCcccCCCC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN---VCPICKASVMADS 375 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~---sCPICR~~l~~~~ 375 (378)
...|+||++.+.++ ..+ +|||.||..||.+|+..+. .||+||..+...+
T Consensus 21 ~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEP---VST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSC---CBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCe---EEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 46899999999864 234 8999999999999998754 8999999887544
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.97 E-value=2.5e-10 Score=100.50 Aligned_cols=49 Identities=35% Similarity=0.682 Sum_probs=41.1
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~ 373 (378)
+...|+||++.|.++ ..+++|+|.||..||.+|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456899999999863 344489999999999999997 7789999998853
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.93 E-value=3.3e-10 Score=99.43 Aligned_cols=49 Identities=22% Similarity=0.477 Sum_probs=41.3
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC-CCCccCcccCCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVMAD 374 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~-sCPICR~~l~~~ 374 (378)
+...|+||++.|.++ ..+ +|+|.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTT-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEc-CCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 457899999999864 234 8999999999999998764 899999998765
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.92 E-value=3.1e-10 Score=94.96 Aligned_cols=51 Identities=24% Similarity=0.597 Sum_probs=42.3
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC-CCCccCcccCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVMAD 374 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~-sCPICR~~l~~~ 374 (378)
..++..|+||++.+.++ ..+ +|+|.||..||.+|++.+. .||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCe---EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 34567899999999864 334 8999999999999998765 999999988653
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.88 E-value=1.6e-10 Score=95.89 Aligned_cols=47 Identities=30% Similarity=0.632 Sum_probs=39.9
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVM 372 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~ 372 (378)
++..|+||++.+..+ ..+ +|||.||..||.+|+.. +..||+||+.+.
T Consensus 14 ~~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSC---EEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCce---eEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 457899999999864 344 89999999999999976 678999999874
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=1.2e-09 Score=86.38 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=42.3
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS 375 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~~ 375 (378)
..++..|+||++.+...+.....++|||.||..||.+|+.. ...||+||+.+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 35667899999998654333221259999999999999854 578999999886544
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.86 E-value=7.8e-10 Score=91.81 Aligned_cols=50 Identities=24% Similarity=0.536 Sum_probs=41.7
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccCCCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVMADS 375 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~~~~ 375 (378)
++..|+||++.+.++ ..+ +|||.||..||.+|+.. ...||+||+.+...+
T Consensus 22 ~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VET-SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEc-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 357899999999853 234 89999999999999987 678999999986543
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.86 E-value=1.2e-09 Score=87.05 Aligned_cols=50 Identities=10% Similarity=-0.009 Sum_probs=42.8
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 374 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~ 374 (378)
.+...|+||++.+.++ ++++|||.|+..||.+|+..+.+||+||..+...
T Consensus 12 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCC----eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4567899999999975 3348999999999999999889999999987643
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.83 E-value=1.8e-09 Score=88.95 Aligned_cols=51 Identities=12% Similarity=0.026 Sum_probs=43.4
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
.+...|+||++.+.++ .++ +|||.|+..||.+||..+.+||+||..+..++
T Consensus 27 p~~~~CpI~~~~m~dP---V~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcccCC---eEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 4567899999999975 234 79999999999999998889999999986543
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.83 E-value=2.1e-09 Score=88.21 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=43.5
Q ss_pred CCCCccceecccccCCCceeeecccC-CcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCG-HDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCg-H~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
.++..|+||++.+.++ ++++|| |.|+..||.+||..+.+||+||..+..++
T Consensus 20 p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 3567899999999975 334899 99999999999998889999999887543
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.82 E-value=1.4e-09 Score=82.40 Aligned_cols=49 Identities=31% Similarity=0.514 Sum_probs=40.4
Q ss_pred CCCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
++..|.||++...+. +...+||||. ||..|+.+|++.+..||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 467899999987753 3222389999 899999999998899999999874
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.80 E-value=1.3e-09 Score=94.77 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=40.9
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC-CCCccCcccC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN-VCPICKASVM 372 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~-sCPICR~~l~ 372 (378)
..++..|+||++.+.++ ..+ +|||.||..||.+|++... .||+||.++.
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQA-QCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCc---EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34567899999999875 234 8999999999999998765 8999999764
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=2.1e-09 Score=79.04 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=39.1
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
.+...|+||++.|.++ ++++|+|.||..||.+| ...||+||+.+..+.
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 4567899999999864 33489999999999884 678999999986543
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.76 E-value=3e-09 Score=106.88 Aligned_cols=47 Identities=30% Similarity=0.720 Sum_probs=40.1
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHh-cCCCCCccCcccCC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-MKNVCPICKASVMA 373 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-~k~sCPICR~~l~~ 373 (378)
...|+||++.+.+ +..+ +|||.||..||..|+. .+..||+||+.+..
T Consensus 332 ~~~C~ICle~~~~---pv~l-pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEE-TTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEe-CCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4689999999865 3344 8999999999999998 67899999998754
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=1.6e-09 Score=90.43 Aligned_cols=49 Identities=18% Similarity=0.508 Sum_probs=40.4
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
+...|+||++.|.++ ..+.+|||.||..||..|+. ..||+||..+...+
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 467899999999864 23328999999999999998 78999999985443
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.75 E-value=4.3e-09 Score=79.41 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=40.4
Q ss_pred CCCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
....|.||++...+. +...+||||. ||..|+.+|.+....||+||+.+.
T Consensus 6 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 456899999987642 3333489999 999999999988889999999874
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=6.4e-09 Score=96.64 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=41.2
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC-CCCCccCcccCCC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMAD 374 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-~sCPICR~~l~~~ 374 (378)
.....|+||++.+.++ +.++|||.||..||.+|+... .+||+||.++...
T Consensus 206 ~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 4567899999999975 334899999999999999874 4599999988543
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.65 E-value=4.1e-09 Score=81.65 Aligned_cols=43 Identities=28% Similarity=0.682 Sum_probs=36.3
Q ss_pred CCCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
++..|+||++.+.+ +..+ ||+|. ||..|+.+| ..||+||+.+.
T Consensus 23 ~~~~C~iC~~~~~~---~~~~-pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFV-PCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEE-TTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCC---EEEc-CCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 35689999999875 3344 89999 999999998 88999999875
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.60 E-value=1.2e-08 Score=89.92 Aligned_cols=51 Identities=24% Similarity=0.602 Sum_probs=42.2
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC-CCCCccCcccCCC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMAD 374 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-~sCPICR~~l~~~ 374 (378)
..+...|+||++.+.++ ..+ +|||.||..||.+|+..+ ..||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc---EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 45567899999999864 334 899999999999999865 4999999988653
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=1.4e-08 Score=82.11 Aligned_cols=47 Identities=30% Similarity=0.553 Sum_probs=37.9
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC------CCCCc--cCcc
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK------NVCPI--CKAS 370 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k------~sCPI--CR~~ 370 (378)
..+..|+||++.|.++ +++..|||.|+..||.+||..+ ..||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4567899999999964 2342499999999999999764 48999 9866
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.56 E-value=1.2e-08 Score=101.26 Aligned_cols=52 Identities=29% Similarity=0.660 Sum_probs=40.5
Q ss_pred CCCCccceecccccCCCce----eeecccCCcccHHHHHHHHhcC-----------CCCCccCcccC
Q 017075 321 QEEGNCVICLEEYKNMDDV----GTLKSCGHDYHVTCIKKWLSMK-----------NVCPICKASVM 372 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v----~~LlpCgH~FH~~CI~kWLk~k-----------~sCPICR~~l~ 372 (378)
.....|+||++.+.++.++ ...++|+|.||..||.+||+.. +.||.||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3567899999999873332 2334799999999999999752 46999999875
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.47 E-value=8.3e-08 Score=72.31 Aligned_cols=48 Identities=29% Similarity=0.755 Sum_probs=36.8
Q ss_pred CCCCccceecccccCCCceeeecccC--C---cccHHHHHHHHhc--CCCCCccCcccC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCG--H---DYHVTCIKKWLSM--KNVCPICKASVM 372 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCg--H---~FH~~CI~kWLk~--k~sCPICR~~l~ 372 (378)
.+...|.||+++.. +.+ ++ ||. + .||..||.+||.. +.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34578999999843 333 34 765 4 8999999999975 578999999875
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=6.1e-08 Score=74.94 Aligned_cols=43 Identities=26% Similarity=0.670 Sum_probs=35.0
Q ss_pred CCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccCC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
+..|+||++.+.+. +++||+|. ||..|+.+ ...||+||+.+..
T Consensus 25 ~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 45799999998753 34489999 99999964 4789999998854
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.43 E-value=7.6e-08 Score=87.43 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=41.2
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC-CCCCccCcccCCC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-NVCPICKASVMAD 374 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-~sCPICR~~l~~~ 374 (378)
.....|+||++.+.++ ++++|||.|+..||.+|+... .+||+|+..+...
T Consensus 104 p~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4567899999999974 334899999999999999874 4699999987543
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.8e-07 Score=71.69 Aligned_cols=44 Identities=30% Similarity=0.668 Sum_probs=35.8
Q ss_pred CCCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
+...|.||++...+ + +++||+|. ||..|+.. ...||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---~-v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---W-VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCC---C-EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCC---E-EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 46789999998764 3 45599999 99999984 5789999998753
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=1.1e-07 Score=76.32 Aligned_cols=48 Identities=25% Similarity=0.646 Sum_probs=38.5
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC--------CCCCc--cCcc
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--------NVCPI--CKAS 370 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k--------~sCPI--CR~~ 370 (378)
+...|+||++++..++.+ .+.+|+|.||..||.+++..+ -.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~-~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccce-EcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356899999999876444 444799999999999999641 36999 9987
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.30 E-value=8.2e-08 Score=75.60 Aligned_cols=42 Identities=31% Similarity=0.729 Sum_probs=34.6
Q ss_pred CCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
+..|.||++.+.+ +..+ ||||. ||..|+..| ..||+||+.+.
T Consensus 18 ~~~C~IC~~~~~~---~v~~-pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFC-PCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCC---EEEE-TTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCc---EEEE-CCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 4689999998764 3344 89999 999999887 38999999874
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.28 E-value=1.9e-07 Score=70.45 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=41.1
Q ss_pred CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCCC
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMADS 375 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~~ 375 (378)
..|+||++.+.++ | .+.+|||.|.+.||.+||+.+.+||+++.++..++
T Consensus 4 ~~CpIs~~~m~dP--V-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRP--V-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSE--E-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCC--E-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 5799999999964 3 33279999999999999998888999999886543
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.21 E-value=4.1e-07 Score=87.25 Aligned_cols=51 Identities=24% Similarity=0.437 Sum_probs=40.9
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC--CCCCc--cCcccCCC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPI--CKASVMAD 374 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k--~sCPI--CR~~l~~~ 374 (378)
.....|+||++.|.++ |. ...|||.||+.||.+|+..+ ..||+ |++.+...
T Consensus 179 ~~el~CPIcl~~f~DP--Vt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcccCC--ee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 4567899999999865 43 33799999999999999864 46999 99977543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.20 E-value=2.2e-07 Score=92.04 Aligned_cols=43 Identities=30% Similarity=0.754 Sum_probs=36.5
Q ss_pred CCCccceecccccCCCceeeecccCCc-ccHHHHHHHHhcCCCCCccCcccC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHD-YHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~-FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
++..|+||++.+.+ +..+ ||||. ||..||..| ..||+||+.+.
T Consensus 294 ~~~~C~IC~~~~~~---~v~l-pCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFI-PCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEE-TTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCc---eEEc-CCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 46789999999875 3344 89999 999999988 78999999875
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.89 E-value=7.3e-06 Score=68.08 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=36.5
Q ss_pred ccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccC
Q 017075 325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVM 372 (378)
Q Consensus 325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~ 372 (378)
.|.+|--.+.. -+++.||+|+||.+|+..|.++ .++||+|+..+.
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 58888777664 3455599999999999999865 588999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.45 E-value=6.3e-05 Score=70.77 Aligned_cols=50 Identities=22% Similarity=0.542 Sum_probs=40.3
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC--CCCccCcccCCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN--VCPICKASVMAD 374 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~--sCPICR~~l~~~ 374 (378)
....|.||.+.+..+. ++..|++.||..|+.+|++.+. .||.|+......
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3678999999988753 3335999999999999998754 899999986543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.85 E-value=0.0079 Score=49.44 Aligned_cols=47 Identities=32% Similarity=0.634 Sum_probs=38.0
Q ss_pred CCCccceecccccCCCceeeeccc-CCcccHHHHHHHHhcCCCCCccCcccCCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSC-GHDYHVTCIKKWLSMKNVCPICKASVMAD 374 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpC-gH~FH~~CI~kWLk~k~sCPICR~~l~~~ 374 (378)
.-..|-.|.-+.+. ++ .| .|.+|..||...|.....||||+.+++..
T Consensus 27 G~~nCKsCWf~~k~---LV---~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENKG---LV---ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCSS---EE---ECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccCC---ee---eecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 44679999877662 22 45 59999999999999999999999998764
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.74 E-value=0.065 Score=40.84 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=35.7
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC----CCCccCcccCC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN----VCPICKASVMA 373 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~----sCPICR~~l~~ 373 (378)
.....|.||.+. .++...-.|...||..|+...|.... .||.|++...+
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 345679999753 34555557999999999998886532 59999876543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.22 E-value=0.064 Score=42.72 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=26.7
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHH-HH
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKK-WL 358 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~k-WL 358 (378)
++..|.||++.+... .+...+.|+|.||..||.. |.
T Consensus 2 ee~~C~~C~~~~~~~-av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD-AVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCB-CCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCC-ceEECCcCChHHhHHHCHHHhc
Confidence 357899999875432 3444458999999999998 53
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.86 E-value=0.1 Score=38.74 Aligned_cols=50 Identities=24% Similarity=0.437 Sum_probs=36.0
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHh-----cCCCCCccCcc
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKAS 370 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-----~k~sCPICR~~ 370 (378)
.+...|+||...+.++...+..-.|.-.||..|+.--.. .+-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 355679999999875555555557999999999864322 23469999764
No 77
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.03 E-value=0.53 Score=36.45 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=33.3
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHh-----cCCCCCccCcccC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKASVM 372 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-----~k~sCPICR~~l~ 372 (378)
...| ||...+......+..-.|.-.||..|+.--.. .+-.||.|+....
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3445 99998864445555557999999999953221 2346999987643
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=86.62 E-value=0.36 Score=35.82 Aligned_cols=47 Identities=19% Similarity=0.609 Sum_probs=33.5
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCcc
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKAS 370 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~~ 370 (378)
...+..|.||.+. .++...-.|.-.||..|+..=|... =.||.|+..
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999863 3454555788999999998755432 249999765
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.03 E-value=0.22 Score=38.12 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=35.1
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc----CCCCCccCcccC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM----KNVCPICKASVM 372 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~----k~sCPICR~~l~ 372 (378)
+...|.||..... ++.+...-.|.-.||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456999988764 4444455579999999999764432 235999988764
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.58 E-value=1.6 Score=35.23 Aligned_cols=37 Identities=14% Similarity=0.451 Sum_probs=25.0
Q ss_pred ccCCCCccceecccccCCCceeeecccCCcccHHHHHHH
Q 017075 319 QMQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357 (378)
Q Consensus 319 ~~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kW 357 (378)
....+..|.||- .+...+... .--|+-+||..|+.+-
T Consensus 11 ~~~~D~~C~VC~-~~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCE-VWTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTC-CCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccc-cccccceec-cccccccccHhhcccc
Confidence 344678999984 344433322 2248999999999996
No 81
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=81.32 E-value=1.2 Score=31.92 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=31.5
Q ss_pred ccceecccccCCCceeeec-ccCCcccHHHHHHHH----hcCCCCCccC
Q 017075 325 NCVICLEEYKNMDDVGTLK-SCGHDYHVTCIKKWL----SMKNVCPICK 368 (378)
Q Consensus 325 ~C~ICLeef~~ge~v~~Ll-pCgH~FH~~CI~kWL----k~k~sCPICR 368 (378)
.|.||...+.+++..+..- .|.-.||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889999987666565665 588899999985321 2456799986
No 82
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=81.26 E-value=0.25 Score=40.70 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=35.0
Q ss_pred CCccceecccccCCCceeeec-ccCCcccHHHHHHHH----h------cCCCCCccCcccC
Q 017075 323 EGNCVICLEEYKNMDDVGTLK-SCGHDYHVTCIKKWL----S------MKNVCPICKASVM 372 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~Ll-pCgH~FH~~CI~kWL----k------~k~sCPICR~~l~ 372 (378)
...|.||...|.........- .|.-.||..|+.--. . .+-.||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 457999999987655555554 588999999984211 0 2346999987543
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=81.05 E-value=0.36 Score=35.81 Aligned_cols=48 Identities=21% Similarity=0.578 Sum_probs=32.9
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCcccC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASVM 372 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~~l~ 372 (378)
..+..|.||.+. + .+...-.|.-.||..|+..=|... =.||.|+....
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 456779999853 2 344444688999999998655432 24999987543
No 84
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=77.82 E-value=1.3 Score=44.23 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=30.9
Q ss_pred CCccceecccccCCCceeeecccCCcccHH--HHHHHHhcC--CCCCccCcccCCC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVT--CIKKWLSMK--NVCPICKASVMAD 374 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~--CI~kWLk~k--~sCPICR~~l~~~ 374 (378)
...|+|-+..+..+ ++.. .|.|.-|.+ -+.....+. -.||+|.+.+...
T Consensus 249 SL~CPlS~~ri~~P--vRg~-~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSI-NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSSE--EEET-TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred eecCCCcccccccc--CcCC-cCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 35799888777753 4444 799984444 333333332 3599999887543
No 85
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=75.63 E-value=1.8 Score=32.65 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=26.7
Q ss_pred CCCCccceecccccCCCceeeec-ccCCcccHHHHH
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLK-SCGHDYHVTCIK 355 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~Ll-pCgH~FH~~CI~ 355 (378)
.....|.+|...+...+..+..- .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 34568999999998776666665 799999999983
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.32 E-value=0.34 Score=35.21 Aligned_cols=46 Identities=24% Similarity=0.616 Sum_probs=32.0
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC----CCCccCc
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN----VCPICKA 369 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~----sCPICR~ 369 (378)
...+..|.||.+. + .+...-.|.-.||..|+..=|.... .||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999874 3 4444557899999999986554321 3998864
No 87
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=74.72 E-value=0.24 Score=36.47 Aligned_cols=48 Identities=23% Similarity=0.618 Sum_probs=33.4
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~~l~~ 373 (378)
.+..|.||... + .+...-.|.-.||..|+..=|... =.||.|+.....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 46789999874 3 444455789999999998655432 249999776543
No 88
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=74.12 E-value=2 Score=42.72 Aligned_cols=49 Identities=14% Similarity=0.310 Sum_probs=31.1
Q ss_pred CCccceecccccCCCceeeecccCCc--ccHHHHHHHHhcC--CCCCccCcccCCC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHD--YHVTCIKKWLSMK--NVCPICKASVMAD 374 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~--FH~~CI~kWLk~k--~sCPICR~~l~~~ 374 (378)
...|+|-...+..+ ++.. .|.|. |-..-+.+...++ -.||+|.+.+..+
T Consensus 215 SL~CPlS~~ri~~P--~Rg~-~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAV-TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp ESBCTTTCSBCSSE--EEET-TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeeCCCccceeccC--CcCC-CCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH
Confidence 35799888777753 4444 79998 4433333333333 3599999987654
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.93 E-value=1.2 Score=31.32 Aligned_cols=44 Identities=20% Similarity=0.588 Sum_probs=29.9
Q ss_pred ccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCc
Q 017075 325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKA 369 (378)
Q Consensus 325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~ 369 (378)
.|.||...-..+ .+...-.|.-.||..|+..=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588898764333 444555799999999997544332 13999975
No 90
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.36 E-value=0.45 Score=36.23 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=34.3
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHH----hcCCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL----SMKNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWL----k~k~sCPICR~~l~~ 373 (378)
....| ||...+..++..+..-.|.-.||..|+.--. ..+-.||.|+..-.+
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 34458 7988876665455555799999999985422 123469999875443
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=73.29 E-value=0.89 Score=36.20 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=35.3
Q ss_pred CCCCccceecccc-cCCCceeeecccCCcccHHHHHHHHhcC--CCCCccCcccCC
Q 017075 321 QEEGNCVICLEEY-KNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPICKASVMA 373 (378)
Q Consensus 321 ~ed~~C~ICLeef-~~ge~v~~LlpCgH~FH~~CI~kWLk~k--~sCPICR~~l~~ 373 (378)
..+..|.||.+.- ...+.+...-.|.-.||..|+..-+.-. =.||.|+.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3567899998764 2333555555788899999997533221 249999775543
No 92
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=73.02 E-value=0.68 Score=40.45 Aligned_cols=47 Identities=26% Similarity=0.459 Sum_probs=32.8
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHh-----cCCCCCccCc
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKA 369 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-----~k~sCPICR~ 369 (378)
+...| ||...+..+.....+-.|.-.||..|+.--.. ..-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 34568 99988765555555667999999999953211 2346999975
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.76 E-value=0.62 Score=34.94 Aligned_cols=47 Identities=19% Similarity=0.535 Sum_probs=32.7
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCccc
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASV 371 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~~l 371 (378)
..+..|.||.+. + .+...-.|.-.||..|+..=|... =.||.|+..-
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 356789999864 3 344455788999999998655432 2499997643
No 94
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=72.48 E-value=1 Score=34.55 Aligned_cols=50 Identities=22% Similarity=0.413 Sum_probs=33.8
Q ss_pred CCCCccceecccc-cCCCceeeecccCCcccHHHHHHHHhcC--CCCCccCcc
Q 017075 321 QEEGNCVICLEEY-KNMDDVGTLKSCGHDYHVTCIKKWLSMK--NVCPICKAS 370 (378)
Q Consensus 321 ~ed~~C~ICLeef-~~ge~v~~LlpCgH~FH~~CI~kWLk~k--~sCPICR~~ 370 (378)
..+..|.||.+.- .+.+.+...-.|.-.||..|+..-+.-. =.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4567899998764 3344565566799999999997532211 249988653
No 95
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.42 E-value=1.9 Score=34.71 Aligned_cols=48 Identities=19% Similarity=0.417 Sum_probs=33.5
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCC----CCCccCccc
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKN----VCPICKASV 371 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~----sCPICR~~l 371 (378)
...+..|.||.+. + .+...-.|.-.||..|+.+=|.... .||.|+...
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 3456789999864 3 3445557888999999977664422 499998653
No 96
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.99 E-value=0.92 Score=36.66 Aligned_cols=44 Identities=23% Similarity=0.577 Sum_probs=28.0
Q ss_pred CCccceecccccCCCceeeecc--cC-CcccHHHHHHHHhc----CCCCCccCccc
Q 017075 323 EGNCVICLEEYKNMDDVGTLKS--CG-HDYHVTCIKKWLSM----KNVCPICKASV 371 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~Llp--Cg-H~FH~~CI~kWLk~----k~sCPICR~~l 371 (378)
...| ||..... ++ ++..-. |. ..||..||. |.. +-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3456 9988653 33 333334 65 679999997 433 23599998754
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.00 E-value=6.5 Score=32.14 Aligned_cols=34 Identities=26% Similarity=0.587 Sum_probs=25.3
Q ss_pred CCCccceecccc-----cCCCceeeecccCCcccHHHHH
Q 017075 322 EEGNCVICLEEY-----KNMDDVGTLKSCGHDYHVTCIK 355 (378)
Q Consensus 322 ed~~C~ICLeef-----~~ge~v~~LlpCgH~FH~~CI~ 355 (378)
....|.||+..- ..++++.....|+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456799998763 2234566666899999999995
No 98
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=67.50 E-value=2.8 Score=46.59 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=40.0
Q ss_pred CCCccceecccccCCCceeeecccC-CcccHHHHHHHHhcCCCCCccCcccCCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCG-HDYHVTCIKKWLSMKNVCPICKASVMAD 374 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCg-H~FH~~CI~kWLk~k~sCPICR~~l~~~ 374 (378)
+...|+|-++.+.++ +.+|.| +.|-+.+|.+||..+.+||+=|+++...
T Consensus 890 ~~F~cPIs~~lM~DP----VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP----VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHhCC----eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 455699999998875 334787 5899999999999999999999887543
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=67.44 E-value=1.6 Score=35.21 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=30.7
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHhc---CCCCCccCcc
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM---KNVCPICKAS 370 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~---k~sCPICR~~ 370 (378)
...| ||-.....+ .++..-.|.-.||..|+..=+.. .-.||.|+..
T Consensus 28 ~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3457 898776655 34455579999999998653222 2359999753
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=65.57 E-value=1.4 Score=36.14 Aligned_cols=45 Identities=29% Similarity=0.668 Sum_probs=31.0
Q ss_pred ccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCc
Q 017075 325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKA 369 (378)
Q Consensus 325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~ 369 (378)
.|.||.+.-.+.+.+...-.|...||..|+..=|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6888886533334455555799999999997655432 24999975
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=64.89 E-value=3.8 Score=31.27 Aligned_cols=45 Identities=24% Similarity=0.591 Sum_probs=28.5
Q ss_pred CCCccceecccccCCCceeeecc--cC-CcccHHHHHHHHhcC----CCCCccCccc
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKS--CG-HDYHVTCIKKWLSMK----NVCPICKASV 371 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~Llp--Cg-H~FH~~CI~kWLk~k----~sCPICR~~l 371 (378)
+...| ||..... ++ ++..-. |. ..||..||. |... -.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34557 8987643 43 333334 66 689999997 4432 2499997654
No 102
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=62.21 E-value=1.4 Score=33.46 Aligned_cols=47 Identities=23% Similarity=0.453 Sum_probs=31.2
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHh---cCCCCCccCc
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPICKA 369 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk---~k~sCPICR~ 369 (378)
.+...| ||...+. ++..+..-.|.-.||..|+.--.. .+-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345567 9988766 444445557999999999954221 2345999964
No 103
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.36 E-value=2.9 Score=32.21 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=32.1
Q ss_pred CCCccceecccccCCCceeeec--ccCCcccHHHHHHHHh---------cCCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKKWLS---------MKNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~Ll--pCgH~FH~~CI~kWLk---------~k~sCPICR~~l~~ 373 (378)
....| ||-.....+ ..+..- .|...||..|+.---. .+-.||.|+..-.+
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 34567 898875444 344444 5999999999953211 24469999875543
No 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.32 E-value=0.82 Score=36.67 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=33.8
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCcc
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKAS 370 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~~ 370 (378)
..++..|.||...-.. +.+...-.|.-.||..|+..=|... =.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456679999877543 3454555799999999997544321 139999763
No 105
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.94 E-value=3.7 Score=31.25 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=31.6
Q ss_pred CccceecccccCCCceeeecccCCcccHHHHHHHH---------hcCCCCCccCcccC
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL---------SMKNVCPICKASVM 372 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWL---------k~k~sCPICR~~l~ 372 (378)
..| ||...+..+ ..+..-.|.-.||..|+.--. ..+-.||.|+..-.
T Consensus 17 ~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 17 LYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 446 899887643 344445799999999994211 23567999986543
No 106
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=58.66 E-value=10 Score=32.88 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=33.5
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHh---------c--CCCCCccCcc
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---------M--KNVCPICKAS 370 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk---------~--k~sCPICR~~ 370 (378)
...+..|.||.+. .++...-.|--.||..||.+=|. . .=.||+|+..
T Consensus 60 Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4456789999864 34555557999999999997663 1 2249999753
No 107
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=57.80 E-value=5.9 Score=31.73 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=28.6
Q ss_pred CCCCccceecccccCCCceeeec-ccCCcccHHHHHHHHhc
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLK-SCGHDYHVTCIKKWLSM 360 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~Ll-pCgH~FH~~CI~kWLk~ 360 (378)
.....|.+|.+.+++..-| .++ .=.|.||..|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 3457899999999875333 221 12699999999999975
No 108
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=56.75 E-value=5 Score=29.49 Aligned_cols=51 Identities=29% Similarity=0.677 Sum_probs=35.0
Q ss_pred CCCCccceecccccC-CCceeeecccCCcccHHHHHHHHhc-------CCCCCccCccc
Q 017075 321 QEEGNCVICLEEYKN-MDDVGTLKSCGHDYHVTCIKKWLSM-------KNVCPICKASV 371 (378)
Q Consensus 321 ~ed~~C~ICLeef~~-ge~v~~LlpCgH~FH~~CI~kWLk~-------k~sCPICR~~l 371 (378)
..+..|.||...... .+.+...-.|.-.||..|+..=|.. .=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 456789999987533 3355555579999999999864321 22499997654
No 109
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=56.29 E-value=3 Score=33.86 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=27.4
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHh
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS 359 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk 359 (378)
..+..|.||.+.-+.. ++.....|...||..||...+.
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccc
Confidence 4567899998763322 3344557999999999987764
No 110
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.59 E-value=1.7 Score=34.49 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=36.2
Q ss_pred CCCccceecccccC-CCceeeecccCCcccHHHHHHHHhc--------CCCCCccCcccCCC
Q 017075 322 EEGNCVICLEEYKN-MDDVGTLKSCGHDYHVTCIKKWLSM--------KNVCPICKASVMAD 374 (378)
Q Consensus 322 ed~~C~ICLeef~~-ge~v~~LlpCgH~FH~~CI~kWLk~--------k~sCPICR~~l~~~ 374 (378)
.+..|.||...-.. .+.+...-.|...||..|+..=|.. .=.|+.|+......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 35679999976432 2355556579999999999875541 12499997765433
No 111
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=55.49 E-value=6.6 Score=32.25 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=24.8
Q ss_pred Cccceeccccc------CCCceeeecccCCcccHHHHHHH
Q 017075 324 GNCVICLEEYK------NMDDVGTLKSCGHDYHVTCIKKW 357 (378)
Q Consensus 324 ~~C~ICLeef~------~ge~v~~LlpCgH~FH~~CI~kW 357 (378)
..|.||+..-. .++++.....|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999997642 23455566679999999999754
No 112
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=51.84 E-value=9.4 Score=31.51 Aligned_cols=47 Identities=21% Similarity=0.514 Sum_probs=30.2
Q ss_pred cCCCCccceecccccCCCceeeec--ccCCcccHHHHHHHHhcCC----CCCccCcccC
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKKWLSMKN----VCPICKASVM 372 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~Ll--pCgH~FH~~CI~kWLk~k~----sCPICR~~l~ 372 (378)
...+..|.||.+. + ++...- .|--.||..|+. |.... .||-|+..+.
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 4456789999832 3 444443 388899999997 54322 3887765443
No 113
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=51.62 E-value=1.2 Score=33.59 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=26.5
Q ss_pred CccceecccccCCCceeeec--ccCCcccHHHHHHHH---h-----cCCCCCccCc
Q 017075 324 GNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKKWL---S-----MKNVCPICKA 369 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~Ll--pCgH~FH~~CI~kWL---k-----~k~sCPICR~ 369 (378)
..| ||-.....+..| ..- .|.-.||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI-~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMI-QCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEE-ECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEE-EECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 456 897665555333 331 388889999983210 0 1345999975
No 114
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=51.62 E-value=3.7 Score=31.32 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=32.7
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHh-----cCCCCCccCccc
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKASV 371 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-----~k~sCPICR~~l 371 (378)
.....||...+..+...+..-.|.-.||..|+.---. ..-.||.|+...
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 3445589887765445555557999999999953221 234699997653
No 115
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.73 E-value=19 Score=29.15 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=36.2
Q ss_pred CCccceecccccC---CCceeeecccCCcccHHHHHHHHhc-CCCCCccCcccC
Q 017075 323 EGNCVICLEEYKN---MDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPICKASVM 372 (378)
Q Consensus 323 d~~C~ICLeef~~---ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPICR~~l~ 372 (378)
...|.||=+++-. ++-....-.|+--.|+.|..-=.+. +..||.|++...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4679999999754 3333333457777899999776654 678999998875
No 116
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=48.81 E-value=19 Score=30.67 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=32.4
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHH------hc-----CCCCCccCcc
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL------SM-----KNVCPICKAS 370 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWL------k~-----k~sCPICR~~ 370 (378)
...+..|.||.+. .++.-.-.|-..||..||.+-| +. .=.|++|+..
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4456679999854 3454455789999999999753 21 1259999654
No 117
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.58 E-value=2.8 Score=32.59 Aligned_cols=45 Identities=24% Similarity=0.575 Sum_probs=30.2
Q ss_pred CccceecccccCCCceeeecccCCcccHHHHHHHHhc--CC---CCCccCc
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KN---VCPICKA 369 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~--k~---sCPICR~ 369 (378)
..|.||...-. ++.+...-.|...||..|+.+=|.. +. .||.|+.
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 37888986433 3345455579999999999854433 12 4999975
No 118
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=48.46 E-value=3.7 Score=40.19 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc-------CCCCCccCccc
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-------KNVCPICKASV 371 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-------k~sCPICR~~l 371 (378)
....|.+|...|..-..--.+-.||++||..|...++.. ...|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 356799999998753222233479999999999876521 24588886654
No 119
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=47.26 E-value=3.6 Score=30.25 Aligned_cols=42 Identities=24% Similarity=0.593 Sum_probs=26.8
Q ss_pred CCccceecccccCCCceeeecc--cC-CcccHHHHHHHHhcC----CCCCccCc
Q 017075 323 EGNCVICLEEYKNMDDVGTLKS--CG-HDYHVTCIKKWLSMK----NVCPICKA 369 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~Llp--Cg-H~FH~~CI~kWLk~k----~sCPICR~ 369 (378)
...| ||..... + .+...-. |. ..||..|+. |... -.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3446 9988643 3 3433435 66 689999997 4432 24999965
No 120
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=46.74 E-value=3 Score=31.71 Aligned_cols=45 Identities=24% Similarity=0.593 Sum_probs=28.7
Q ss_pred ccceecccccCCCceeeecccCCcccHHHHHHHHhc--CC---CCCccCcc
Q 017075 325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KN---VCPICKAS 370 (378)
Q Consensus 325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~--k~---sCPICR~~ 370 (378)
.|.||...-. ++.+...-.|.-.||..|+..=|.. +. .||.|+..
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 4667765422 2345455578899999999854433 12 49999753
No 121
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=45.93 E-value=2.5 Score=35.73 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=31.2
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcc
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS 370 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~ 370 (378)
....|.+|...|..-..---.-.||.+||..|..........|-.|-..
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 3468999999997532222334799999999987765556667777543
No 122
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=45.86 E-value=9.4 Score=32.64 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=25.9
Q ss_pred CCCCccceeccccc-CCCceeeecccCCcccHHHHH
Q 017075 321 QEEGNCVICLEEYK-NMDDVGTLKSCGHDYHVTCIK 355 (378)
Q Consensus 321 ~ed~~C~ICLeef~-~ge~v~~LlpCgH~FH~~CI~ 355 (378)
..+..|.||+..|. ....-.....|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35678999999994 333345566899999999854
No 123
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=45.71 E-value=3.8 Score=30.15 Aligned_cols=42 Identities=24% Similarity=0.611 Sum_probs=26.0
Q ss_pred CCccceecccccCCCceeeecc--cC-CcccHHHHHHHHhcC----CCCCccCc
Q 017075 323 EGNCVICLEEYKNMDDVGTLKS--CG-HDYHVTCIKKWLSMK----NVCPICKA 369 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~Llp--Cg-H~FH~~CI~kWLk~k----~sCPICR~ 369 (378)
...| ||..... + .+...-. |. ..||..|+. |... -.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3445 8987643 3 3333334 55 679999997 5432 24999964
No 124
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.57 E-value=13 Score=27.45 Aligned_cols=40 Identities=23% Similarity=0.591 Sum_probs=29.1
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
...|..|-+.+..++.+.. -+..||..|. .|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCC
Confidence 4679999988886665432 4678888884 58888887754
No 125
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=43.93 E-value=15 Score=32.44 Aligned_cols=47 Identities=19% Similarity=0.410 Sum_probs=33.4
Q ss_pred ccCCCCccceecccccCCCceeeec--ccCCcccHHHHHHHHhcC----------CCCCccCc
Q 017075 319 QMQEEGNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKKWLSMK----------NVCPICKA 369 (378)
Q Consensus 319 ~~~ed~~C~ICLeef~~ge~v~~Ll--pCgH~FH~~CI~kWLk~k----------~sCPICR~ 369 (378)
....+..|.||-+. .++...- .|...||..||+.++... =.|=+|.-
T Consensus 75 eDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 75 DDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 34456789999864 4565554 588999999999998431 14888854
No 126
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=43.76 E-value=17 Score=36.35 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=33.8
Q ss_pred cCCCCccceecccccCCCceeeec--ccCCcccHHHHHHHHhc----------CCCCCccCcc
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLK--SCGHDYHVTCIKKWLSM----------KNVCPICKAS 370 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~Ll--pCgH~FH~~CI~kWLk~----------k~sCPICR~~ 370 (378)
...+..|.||-+. .++..+- .|...||..||+.++.. +=.|=+|.-.
T Consensus 90 DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4456789999864 3555555 79999999999999822 2248888643
No 127
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.50 E-value=14 Score=27.97 Aligned_cols=43 Identities=23% Similarity=0.594 Sum_probs=30.7
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCCC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMAD 374 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~~ 374 (378)
.....|..|-..+...+.+.. -+..||..|+ .|-.|+..|...
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCCC
Confidence 345689999999876655542 4678998884 588888776543
No 128
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=43.28 E-value=3.3 Score=32.26 Aligned_cols=45 Identities=24% Similarity=0.558 Sum_probs=28.0
Q ss_pred ccceecccccCCCceeeecccCCcccHHHHHHHHhcC-----CCCCccCcc
Q 017075 325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK-----NVCPICKAS 370 (378)
Q Consensus 325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k-----~sCPICR~~ 370 (378)
.|.||...-.. +.+...-.|.-.||..|+..-|... =.||.|+.+
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 46666554332 3444444788999999998765431 249999863
No 129
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=41.49 E-value=14 Score=29.14 Aligned_cols=50 Identities=20% Similarity=0.559 Sum_probs=32.8
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc------CCCCCccCccc
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM------KNVCPICKASV 371 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~------k~sCPICR~~l 371 (378)
+...|.+|...|..-..---...||.+||..|...++.. ...|-.|-..+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 346799999999754332334479999999998765421 23466664433
No 130
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.89 E-value=19 Score=26.04 Aligned_cols=40 Identities=20% Similarity=0.487 Sum_probs=25.5
Q ss_pred CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
..|..|-+.+...+.+... -+..||..|+ .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCC
Confidence 4688888777765444332 3567777774 57777776643
No 131
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=38.69 E-value=16 Score=28.28 Aligned_cols=52 Identities=25% Similarity=0.575 Sum_probs=32.9
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc------CCCCCccCcccC
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM------KNVCPICKASVM 372 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~------k~sCPICR~~l~ 372 (378)
.+...|.+|...|..-..---.-.||.+||..|....+.. ...|-.|-..+.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 3456799999999753322223369999999998654321 124666655443
No 132
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.46 E-value=15 Score=27.81 Aligned_cols=40 Identities=25% Similarity=0.595 Sum_probs=29.5
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
....|.-|-+.+..++.+.. -+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 45679999998887665543 3677888885 6888887764
No 133
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.11 E-value=16 Score=26.43 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=26.0
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
...|.-|-..+...+.+.. .-+..||..|. .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE--YGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC--STTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE--ECccccCcccC--------eECCCCCcCCC
Confidence 3568888887776444432 24667887774 57777776643
No 134
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=37.58 E-value=7.5 Score=32.27 Aligned_cols=24 Identities=25% Similarity=0.744 Sum_probs=16.2
Q ss_pred ccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 344 SCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 344 pCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
.||+.|. +=+.....||.|+.+-.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 7999991 11233567999998754
No 135
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=37.07 E-value=21 Score=28.15 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=25.8
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHH
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kW 357 (378)
.+...|.+|...|..-..---.-.||.+||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3456799999998754322223369999999997654
No 136
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=35.88 E-value=20 Score=27.75 Aligned_cols=51 Identities=16% Similarity=0.380 Sum_probs=33.4
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHHHhc--------CCCCCccCccc
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--------KNVCPICKASV 371 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~--------k~sCPICR~~l 371 (378)
.+...|.+|...|..-..---.-.||.+||..|....+.. ...|-.|-..+
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l 77 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLAL 77 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHH
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHH
Confidence 3456899999999764322223369999999998765321 23577775544
No 137
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.85 E-value=18 Score=30.29 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=25.8
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHH
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kW 357 (378)
+...|.+|...|..-..---.-.||.+||..|....
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 446799999999753322233369999999997654
No 138
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=35.01 E-value=21 Score=26.92 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=24.7
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHH
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kW 357 (378)
+..|.+|...|..-..---.-.||.+||..|....
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 35899999998753222223369999999997543
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.95 E-value=15 Score=33.19 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=26.2
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHH
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWL 358 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWL 358 (378)
++..|.+|...|..-..---+-.||.+||..|.....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 3578999999987533222333699999999976543
No 140
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.90 E-value=24 Score=26.14 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=29.3
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
...|..|-+.+..++.+... -+..||..|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCC
Confidence 35799999888876654332 4678888885 68888877754
No 141
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=34.88 E-value=14 Score=30.48 Aligned_cols=12 Identities=17% Similarity=0.819 Sum_probs=10.7
Q ss_pred ccHHHHHHHHhc
Q 017075 349 YHVTCIKKWLSM 360 (378)
Q Consensus 349 FH~~CI~kWLk~ 360 (378)
||..||.+|++.
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999963
No 142
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=34.81 E-value=7.3 Score=28.89 Aligned_cols=42 Identities=24% Similarity=0.625 Sum_probs=26.4
Q ss_pred CCccceecccccCCCceeeecc--cC-CcccHHHHHHHHhc----CCCCCccCc
Q 017075 323 EGNCVICLEEYKNMDDVGTLKS--CG-HDYHVTCIKKWLSM----KNVCPICKA 369 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~Llp--Cg-H~FH~~CI~kWLk~----k~sCPICR~ 369 (378)
...| ||..... + .++..-. |. ..||..|+. |.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3446 9988633 4 3333334 55 789999997 333 235999965
No 143
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=34.68 E-value=14 Score=30.40 Aligned_cols=11 Identities=36% Similarity=1.096 Sum_probs=10.3
Q ss_pred ccHHHHHHHHh
Q 017075 349 YHVTCIKKWLS 359 (378)
Q Consensus 349 FH~~CI~kWLk 359 (378)
||..||.+|++
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.42 E-value=16 Score=33.41 Aligned_cols=51 Identities=20% Similarity=0.513 Sum_probs=33.9
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhc--------CCCCCccCcccC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--------KNVCPICKASVM 372 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~--------k~sCPICR~~l~ 372 (378)
++..|.+|...|..-..---+-.||.+||..|....+.. ...|-.|-..+.
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 456899999999754322233479999999998765321 235777765543
No 145
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=33.96 E-value=9.2 Score=35.66 Aligned_cols=47 Identities=23% Similarity=0.551 Sum_probs=27.6
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHhc--CC---CCCccCcc
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM--KN---VCPICKAS 370 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~--k~---sCPICR~~ 370 (378)
+..|.||...-.. +.+..+-.|.-.||..|+.+=|.. +. .||.|+..
T Consensus 174 ~c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468888764332 344455578999999999865543 22 49999753
No 146
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.39 E-value=23 Score=27.34 Aligned_cols=37 Identities=19% Similarity=0.499 Sum_probs=25.4
Q ss_pred CCCCccceecccccCCCceeeecccCCcccHHHHHHH
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKW 357 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kW 357 (378)
.+...|.+|...|..-..---.-.||.+||..|....
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 3456799999999753221122369999999997653
No 147
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=33.16 E-value=7.2 Score=40.03 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=31.8
Q ss_pred CccceecccccCCCceeeecccCCcccHHHHHHHHh-----cCCCCCccCcc
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS-----MKNVCPICKAS 370 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk-----~k~sCPICR~~ 370 (378)
...+||...+..+.....+-.|.-.||..|+.---. .+-.||.|+..
T Consensus 37 ~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 344599988764455555667999999999943221 12469999854
No 148
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=33.03 E-value=14 Score=27.26 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=25.8
Q ss_pred CCccceecccccCCCceeeecccCCcccH-HHHHHHHhcCCCCCccCccc
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHV-TCIKKWLSMKNVCPICKASV 371 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~-~CI~kWLk~k~sCPICR~~l 371 (378)
-..|..|...+..+. ... .=+..||. .|..+-+ ...|-.|...+
T Consensus 27 CF~C~~C~~~L~~~~-~~~--~~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 27 CLKCEKCGKTLTSGG-HAE--HEGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp TCBCTTTCCBCCTTT-EEE--ETTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCCccccCccCCCCc-eEC--cCCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 356888887776542 221 23566777 5776533 45577776543
No 149
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=33.01 E-value=21 Score=27.37 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=23.2
Q ss_pred CCCCccceecccccCCCceeeeccc-CCcccHHHHHHH
Q 017075 321 QEEGNCVICLEEYKNMDDVGTLKSC-GHDYHVTCIKKW 357 (378)
Q Consensus 321 ~ed~~C~ICLeef~~ge~v~~LlpC-gH~FH~~CI~kW 357 (378)
.+..-|.||.++- .++ ...| +-+||..|...-
T Consensus 6 ee~pWC~ICneDA----tlr-C~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDA----TLR-CAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCC----CEE-ETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCC----eEE-ecCCCCceehHHHHHHH
Confidence 3445699999882 244 4479 788999998764
No 150
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=32.48 E-value=22 Score=26.45 Aligned_cols=42 Identities=26% Similarity=0.510 Sum_probs=29.8
Q ss_pred CccceecccccCCCceeeecccCCcccHHHHHHHHhc-CCCCCcc
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSM-KNVCPIC 367 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~-k~sCPIC 367 (378)
..|--|+..|.+. .+.+...|++.||.+|= ..+.. -..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchh-HHHHhhccCCcCC
Confidence 4599999998643 34567789999999993 33322 3579988
No 151
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.16 E-value=30 Score=24.99 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=12.2
Q ss_pred CccceecccccCCCceeeecccCCcccHHH
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTC 353 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~C 353 (378)
..|..|-+.+...+.+.. .-+..||..|
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C 33 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVV--ALDRVFHVGC 33 (72)
T ss_dssp CCCSSSCSCCCSSSCCEE--CSSSEECTTT
T ss_pred CCCccCCCccCCCceEEE--ECCCeEcccC
Confidence 345555555543222221 1244555555
No 152
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=32.01 E-value=13 Score=27.87 Aligned_cols=40 Identities=20% Similarity=0.622 Sum_probs=23.1
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
...|..|-+.+..++.+. .-+..||..|. .|-.|+..|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ---CDGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE---ETTEEEESSSE--------ECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEE---eCCcccccccC--------ccCCCCCCCCC
Confidence 356777777776554332 24566776664 46666666543
No 153
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.69 E-value=27 Score=25.50 Aligned_cols=42 Identities=21% Similarity=0.521 Sum_probs=29.1
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
....|.-|-+.+...+.+... -+..||..|. .|-.|+..|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 356799999888765555433 4677888884 57788777643
No 154
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=31.57 E-value=19 Score=31.37 Aligned_cols=47 Identities=19% Similarity=0.469 Sum_probs=30.9
Q ss_pred CCCccceecccccCC-CceeeecccCCcccHHHHHHHHhcCC--CCCccCc
Q 017075 322 EEGNCVICLEEYKNM-DDVGTLKSCGHDYHVTCIKKWLSMKN--VCPICKA 369 (378)
Q Consensus 322 ed~~C~ICLeef~~g-e~v~~LlpCgH~FH~~CI~kWLk~k~--sCPICR~ 369 (378)
.+..|.||+..|..- ..-..+..|.|.+|..|- .|+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 567899999987432 123345589999999997 2443222 2777754
No 155
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=31.47 E-value=11 Score=28.72 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=8.9
Q ss_pred HHHhcCCCCCccCcccC
Q 017075 356 KWLSMKNVCPICKASVM 372 (378)
Q Consensus 356 kWLk~k~sCPICR~~l~ 372 (378)
+||..--.||+|++++.
T Consensus 3 ~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 3 TKLLDILACPICKGPLK 19 (69)
T ss_dssp CCGGGTCCCTTTCCCCE
T ss_pred hHHHhheeCCCCCCcCe
Confidence 34444445666666553
No 156
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=30.99 E-value=11 Score=24.18 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=9.5
Q ss_pred CCCCCccCcccCC
Q 017075 361 KNVCPICKASVMA 373 (378)
Q Consensus 361 k~sCPICR~~l~~ 373 (378)
+..||+|+..++.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3469999987754
No 157
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.09 E-value=32 Score=24.85 Aligned_cols=40 Identities=18% Similarity=0.412 Sum_probs=26.1
Q ss_pred CCccceecccccC--CCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 323 EGNCVICLEEYKN--MDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 323 d~~C~ICLeef~~--ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
...|.-|-+.+.. .+.+.. .-+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccC--------EeccCCCcCC
Confidence 3568888888775 333322 24677888874 5777877764
No 158
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.77 E-value=29 Score=26.51 Aligned_cols=39 Identities=21% Similarity=0.597 Sum_probs=20.5
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
...|.-|-+.+...+.+. .-+..||..|+ .|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~ 53 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISCF--------RCSYCNNKLS 53 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTTC--------BCTTTCCBCC
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCCC--------eeCCCCCCCC
Confidence 345666666665544332 23555666663 3555555443
No 159
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=29.74 E-value=11 Score=30.12 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=26.4
Q ss_pred CCCccceecccccCCCceeeecccC---CcccHHHHHHHHhc----CCCCCc-cCc
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCG---HDYHVTCIKKWLSM----KNVCPI-CKA 369 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCg---H~FH~~CI~kWLk~----k~sCPI-CR~ 369 (378)
+...| ||..... ++ ++..-.|. -.||..||. |.. +-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34456 9987533 33 33333544 689999996 332 235999 975
No 160
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.62 E-value=16 Score=30.07 Aligned_cols=39 Identities=23% Similarity=0.530 Sum_probs=22.2
Q ss_pred CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCccc
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l 371 (378)
..|++|..++.-... +.+|..|-.. ++....||-|.++|
T Consensus 33 ~~CP~Cq~eL~~~g~--------~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--------HARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETT--------EEEETTTCCE-EEEEEECTTTCSBC
T ss_pred ccCccCCCcceecCC--------EEECccccch-hhccccCcchhhHH
Confidence 679999877653222 2224444221 23455688888776
No 161
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=29.36 E-value=15 Score=24.44 Aligned_cols=10 Identities=40% Similarity=1.015 Sum_probs=6.0
Q ss_pred CCCccCcccC
Q 017075 363 VCPICKASVM 372 (378)
Q Consensus 363 sCPICR~~l~ 372 (378)
.||+|++.+.
T Consensus 7 iCP~C~~~l~ 16 (34)
T 3mjh_B 7 ICPQCMKSLG 16 (34)
T ss_dssp ECTTTCCEES
T ss_pred CCcHHHHHcC
Confidence 3677766554
No 162
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=29.21 E-value=9 Score=30.95 Aligned_cols=46 Identities=17% Similarity=0.509 Sum_probs=30.3
Q ss_pred ccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCccc
Q 017075 325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASV 371 (378)
Q Consensus 325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~~l 371 (378)
.|.||...-.. +.+...-.|...||..|+.+=|... -.||.|+...
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 57777665333 3455555799999999998655432 2499886644
No 163
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.12 E-value=32 Score=25.24 Aligned_cols=39 Identities=21% Similarity=0.485 Sum_probs=26.0
Q ss_pred CccceecccccC--CCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 324 GNCVICLEEYKN--MDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 324 ~~C~ICLeef~~--ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
..|..|-..+.. ..++.. .-+..||..|+ .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC--FQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE--ETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEE--ECCcccCcccC--------ChhhCCCcCC
Confidence 578888888774 223322 24677888885 5777777664
No 164
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.66 E-value=32 Score=24.44 Aligned_cols=42 Identities=21% Similarity=0.521 Sum_probs=30.3
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
....|.-|-..+...+.+... =+..||..|. .|-.|...|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 346899999998876655433 4667898886 58888877643
No 165
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=27.19 E-value=21 Score=29.08 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=17.5
Q ss_pred CccceecccccCCCceeeecccCCcccHHHHHHHHh
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS 359 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk 359 (378)
..|..|...+..++..... =+..||..|..+.+.
T Consensus 37 F~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWTK 70 (123)
T ss_dssp CBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHHH
T ss_pred CccccCCCCCCCCCcEEee--CCEEEcHHHhHHHhc
Confidence 3466666665444333222 355566666666553
No 166
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=27.14 E-value=21 Score=22.66 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=20.7
Q ss_pred CccceecccccCCCceeeecccCCcccHHHH
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCI 354 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI 354 (378)
..|+.|-..+-..|++.. =+..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 579999988876665543 4778998883
No 167
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.77 E-value=36 Score=25.87 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=26.1
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
....|..|-..+. ++.+. .-+..||..|+ .|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV---ALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE---ETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE---ECCccccccCC--------ccCCCCCCCCC
Confidence 3467888888774 33332 34677888875 57788777653
No 168
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.34 E-value=10 Score=28.89 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=6.5
Q ss_pred HHhcCCCCCccCccc
Q 017075 357 WLSMKNVCPICKASV 371 (378)
Q Consensus 357 WLk~k~sCPICR~~l 371 (378)
||..--.||+|++++
T Consensus 6 ~LLeiL~CP~ck~~L 20 (67)
T 2jny_A 6 QLLEVLACPKDKGPL 20 (67)
T ss_dssp GGTCCCBCTTTCCBC
T ss_pred HHHHHhCCCCCCCcC
Confidence 333333455555443
No 169
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.71 E-value=41 Score=24.09 Aligned_cols=38 Identities=18% Similarity=0.518 Sum_probs=20.6
Q ss_pred CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
..|..|-+.+.. +.+. .-+..||..|+ .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVIK---AMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SBCSSSCCBCCS-CCEE---ETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CcCccCCCEecc-eEEE---ECcccccccCC--------EeCCCCCcCCC
Confidence 456777666652 2222 23556666664 46666665543
No 170
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=24.67 E-value=22 Score=25.30 Aligned_cols=39 Identities=23% Similarity=0.501 Sum_probs=26.0
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
...|..|-+.+. ++.+. .-+..||..|. .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~-~~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVN---AMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEEC---CTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEEE---ECccccccCcC--------EECCCCCCCCC
Confidence 356888888877 33222 34677888874 58888877654
No 171
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.23 E-value=44 Score=25.32 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=28.6
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
....|.-|-+.+.. +.+. .-+..||..|+ .|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK---ARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE---SSSCEECTTTC--------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEEE---ECCceECccCC--------EecCCCCCCCC
Confidence 45679999988875 2222 35678998885 68888887754
No 172
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=24.16 E-value=4.7 Score=33.15 Aligned_cols=46 Identities=17% Similarity=0.510 Sum_probs=30.9
Q ss_pred ccceecccccCCCceeeecccCCcccHHHHHHHHhcC----CCCCccCccc
Q 017075 325 NCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMK----NVCPICKASV 371 (378)
Q Consensus 325 ~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k----~sCPICR~~l 371 (378)
.|.||...-..+ .+...-.|...||..|+..=|... =.||.|+..+
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 588887754333 454555799999999998644332 1399997654
No 173
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.90 E-value=28 Score=28.60 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=28.7
Q ss_pred CCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 323 EGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 323 d~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
...|.-|-..+.....+. .-+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEccccc--------CcCcCCCccc
Confidence 468999999887543333 35778999885 6888988774
No 174
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=22.70 E-value=15 Score=25.91 Aligned_cols=42 Identities=21% Similarity=0.445 Sum_probs=27.1
Q ss_pred ceecccccCCCceeeecccCCcccHHHHHHHHh---cCCCCCccCc
Q 017075 327 VICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLS---MKNVCPICKA 369 (378)
Q Consensus 327 ~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk---~k~sCPICR~ 369 (378)
.||..... +......-.|.-.||..|+.--.. .+-.||.|+.
T Consensus 7 C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 47877655 334444557999999999953221 2346999874
No 175
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.31 E-value=44 Score=24.90 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=26.2
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccCC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVMA 373 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~~ 373 (378)
....|.-|-..+. ++.+. .-+..||..|. .|-.|+..|..
T Consensus 14 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLI---FKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCC---CSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCCccCCCEec-ceEEE---ECcceeCCCCC--------EeCCCCCccCC
Confidence 3467888888877 33332 34677887774 58888777653
No 176
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.28 E-value=40 Score=25.00 Aligned_cols=37 Identities=27% Similarity=0.681 Sum_probs=24.6
Q ss_pred CccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 324 GNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 324 ~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
..|..|-..+. ++.+. .-+..||..|. .|-.|+..|.
T Consensus 16 ~~C~~C~~~I~-~~~v~---a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS---ALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEE---ETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEec-cceEE---ECCceeCccCC--------ccccCCCCCC
Confidence 47888988877 33332 34677888885 4777776664
No 177
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.14 E-value=74 Score=25.61 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=0.0
Q ss_pred cCCCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCccc
Q 017075 320 MQEEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASV 371 (378)
Q Consensus 320 ~~ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l 371 (378)
......|.-|-..+...+.+..+ +..||..|+ .|-.|+..|
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~a~---~~~wH~~CF--------~C~~C~~~L 42 (122)
T 1m3v_A 2 SLSWKRCAGCGGKIADRFLLYAM---DSYWHSRCL--------KCSSCQAQL 42 (122)
T ss_dssp CSCCCCBSSSSSCCCSSCCEEET---TEEECHHHH--------CCSSSCCCT
T ss_pred CCCCCCCcccCCEeCCcEEEEEC---CceeHhhCC--------CcCCCCCcc
No 178
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.19 E-value=48 Score=24.52 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=27.2
Q ss_pred CCCccceecccccCCCceeeecccCCcccHHHHHHHHhcCCCCCccCcccC
Q 017075 322 EEGNCVICLEEYKNMDDVGTLKSCGHDYHVTCIKKWLSMKNVCPICKASVM 372 (378)
Q Consensus 322 ed~~C~ICLeef~~ge~v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~l~ 372 (378)
....|.-|-+.+.. +.+ . .-+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~-~--a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFV-K--LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCE-E--CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEE-E--ECcceeCcCcC--------eeCCCCCCCC
Confidence 45689999988875 222 2 35778998885 5788877653
No 179
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.07 E-value=39 Score=30.41 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=15.6
Q ss_pred eeeecccCCcccHHHHHHHHhcCCCCCccCcc
Q 017075 339 VGTLKSCGHDYHVTCIKKWLSMKNVCPICKAS 370 (378)
Q Consensus 339 v~~LlpCgH~FH~~CI~kWLk~k~sCPICR~~ 370 (378)
+.++..||+++-. .....||+|..+
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 4455568887642 122479999764
Done!