Query 017076
Match_columns 378
No_of_seqs 110 out of 142
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:24:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11891 DUF3411: Domain of un 100.0 1.9E-75 4.1E-80 532.0 15.0 178 151-328 1-179 (180)
2 COG4907 Predicted membrane pro 88.8 0.25 5.4E-06 52.4 2.1 10 28-37 551-560 (595)
3 PF02957 TT_ORF2: TT viral ORF 69.2 14 0.00031 31.7 5.9 13 91-103 106-118 (122)
4 PF02979 NHase_alpha: Nitrile 60.1 5.6 0.00012 37.8 1.9 43 117-161 16-68 (188)
5 PLN03138 Protein TOC75; Provis 54.9 20 0.00044 40.6 5.3 7 300-306 326-332 (796)
6 KOG3074 Transcriptional regula 47.8 11 0.00024 37.2 1.8 13 131-143 38-50 (263)
7 PF07631 PSD4: Protein of unkn 40.4 54 0.0012 28.9 4.8 33 109-159 17-51 (128)
8 COG1512 Beta-propeller domains 39.9 28 0.00062 34.6 3.2 7 66-72 239-245 (271)
9 KOG3973 Uncharacterized conser 36.1 27 0.00058 36.6 2.5 22 65-86 360-383 (465)
10 PF08671 SinI: Anti-repressor 31.8 45 0.00098 23.0 2.3 21 114-135 9-29 (30)
11 KOG4096 Uncharacterized conser 31.3 7.9 0.00017 31.9 -1.7 20 303-322 52-71 (75)
12 PRK05325 hypothetical protein; 30.1 56 0.0012 34.4 3.7 12 92-103 103-114 (401)
13 PLN02705 beta-amylase 28.3 1.1E+02 0.0023 34.4 5.5 13 248-260 303-315 (681)
14 PHA00370 III attachment protei 27.9 54 0.0012 33.0 3.0 7 234-240 244-250 (297)
15 PF07096 DUF1358: Protein of u 27.7 84 0.0018 28.3 3.9 53 261-316 30-91 (124)
16 PTZ00146 fibrillarin; Provisio 26.8 61 0.0013 32.7 3.2 6 259-264 227-232 (293)
17 TIGR01323 nitrile_alph nitrile 26.7 47 0.001 31.6 2.2 42 117-160 10-61 (185)
18 TIGR02877 spore_yhbH sporulati 23.2 68 0.0015 33.5 2.8 11 92-102 115-125 (371)
19 PLN02705 beta-amylase 22.7 1.1E+02 0.0025 34.1 4.5 9 279-287 270-278 (681)
20 KOG0921 Dosage compensation co 22.7 68 0.0015 37.6 2.9 27 66-92 1252-1278(1282)
21 KOG1456 Heterogeneous nuclear 22.0 77 0.0017 33.7 2.9 11 112-122 46-56 (494)
22 COG0536 Obg Predicted GTPase [ 20.4 78 0.0017 33.1 2.5 12 61-72 9-20 (369)
23 KOG0624 dsRNA-activated protei 20.2 55 0.0012 34.7 1.4 14 59-72 464-477 (504)
No 1
>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.
Probab=100.00 E-value=1.9e-75 Score=532.02 Aligned_cols=178 Identities=53% Similarity=0.801 Sum_probs=174.3
Q ss_pred hhhccChhhHHHHHHHhhhhhhhhHHHHHhhcccchHhHHHHHHHHHHHHHHHHHHhhhhcccccccCCCcccccC-hhh
Q 017076 151 ERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELDFVFADVVMAIIADFMLVWLPAPTISLRPPLAMSTG-PIA 229 (378)
Q Consensus 151 ~RlLADP~FlfKl~~E~~i~v~~~~~aE~~~Rge~F~~ElDfv~sd~v~g~i~nf~LV~LlAPt~s~~~~~~~~ag-~l~ 229 (378)
|||||||+|||||++||+||++|+++|||++|||+||+|||||+||+++++|+||+||||||||++++++.+...| .++
T Consensus 1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~~~~~~ 80 (180)
T PF11891_consen 1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSPGGGLQ 80 (180)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCcccccccchHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998775544 999
Q ss_pred hhhhcCCchhhhcccCCCCcchhhhHHHHhhcchhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCCCCCCCCCcchhhhhh
Q 017076 230 KFFFNCPDNAFQVAFTGTSYSLIQRIGAIVRNGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEAEDVPIISTSVA 309 (378)
Q Consensus 230 k~~~~lP~n~Fq~~~pg~~fsl~qR~~a~~~KG~~l~~VG~~aglvG~glsN~L~~~Rk~~d~~~~~~~~~pP~l~tal~ 309 (378)
|++++||+|+||+++||++||++||++||+|||++|++|||+||++|+++||+|+++||++||+||+++++||+++||++
T Consensus 81 ~~~~~~P~n~Fq~~~~g~~fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~lsn~L~~~rk~~~~~~e~~~~~ppv~~ta~~ 160 (180)
T PF11891_consen 81 KFLGSLPNNAFQKGYPGRSFSLAQRIGAFVYKGAKLAAVGFIAGLVGTGLSNALIAARKKVDPSFEPSVPVPPVLKTALG 160 (180)
T ss_pred HHHHhChHHHhccCCCCCcccHHHHHHHHHHcchHhhhhHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhccchhhHHHHHHH
Q 017076 310 YGVYMAVSSNLRYQVLAGV 328 (378)
Q Consensus 310 wg~fMGvSSNlRYQil~Gl 328 (378)
||+|||+|||+|||+|||+
T Consensus 161 ~g~fmGvSsNlRYQil~Gi 179 (180)
T PF11891_consen 161 WGAFMGVSSNLRYQILNGI 179 (180)
T ss_pred HHHHHhhhHhHHHHHHcCC
Confidence 9999999999999999998
No 2
>COG4907 Predicted membrane protein [Function unknown]
Probab=88.82 E-value=0.25 Score=52.44 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=4.4
Q ss_pred eccccCCCCC
Q 017076 28 KNITRQIPNP 37 (378)
Q Consensus 28 ~~~~~~~~~~ 37 (378)
||-+|--.++
T Consensus 551 ~nysr~~~~~ 560 (595)
T COG4907 551 NNYSRSFNNL 560 (595)
T ss_pred cchhhhhccc
Confidence 4444444333
No 3
>PF02957 TT_ORF2: TT viral ORF2; InterPro: IPR004118 This entry represents the Gyroviral VP2 protein and TT viral ORF2. Torque teno virus (TTV) is a nonenveloped and single-stranded DNA virus that was initially isolated from a Japanese patient with hepatitis of unknown aetiology, and which has since been found to infect both healthy and diseased individuals []. Numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF2 is a 150 residue protein of unknown function. Gyroviruses are small circular single stranded viruses, such as the Chicken anaemia virus. The VP2 protein contains a set of conserved cysteine and histidine residues suggesting a zinc binding domain. VP2 may act as a scaffold protein in virion assembly and may also play a role in intracellular signaling during viral replication.
Probab=69.15 E-value=14 Score=31.74 Aligned_cols=13 Identities=15% Similarity=-0.102 Sum_probs=6.6
Q ss_pred CChHHHHHHHHHh
Q 017076 91 HNCTEAIFALAKA 103 (378)
Q Consensus 91 ~~r~e~~~Vl~e~ 103 (378)
-.-+++++++++.
T Consensus 106 ~~~~dld~L~aa~ 118 (122)
T PF02957_consen 106 YDEEDLDELFAAA 118 (122)
T ss_pred CChHHHHHHhhhh
Confidence 3445555555543
No 4
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=60.07 E-value=5.6 Score=37.78 Aligned_cols=43 Identities=37% Similarity=0.464 Sum_probs=31.0
Q ss_pred HHHcCCCCHHHHHHHHhhccC---chh-------hhhhhcccchhhhccChhhHH
Q 017076 117 AIEAGRVPAAIVKRYLELEKS---PVF-------RWLLNFGGFRERLLADDLFLA 161 (378)
Q Consensus 117 A~e~G~vs~~~L~rfl~l~~~---p~~-------~~l~~~~g~R~RlLADP~Flf 161 (378)
-+|.|.|+++.+.++.+...+ |-. +|. -++||+|||+||.=..
T Consensus 16 l~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~--Dp~FK~rLLaD~~aA~ 68 (188)
T PF02979_consen 16 LIEKGLITPAEVDRIIETYESRVGPRNGARVVARAWT--DPAFKARLLADPTAAI 68 (188)
T ss_dssp HHHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH---HHHHHHHHHSHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCccccceeehhhhC--CHHHHHHHHHCHHHHH
Confidence 368899999999998887654 421 244 4999999999997444
No 5
>PLN03138 Protein TOC75; Provisional
Probab=54.88 E-value=20 Score=40.63 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=2.7
Q ss_pred CCcchhh
Q 017076 300 DVPIIST 306 (378)
Q Consensus 300 ~pP~l~t 306 (378)
+++.+..
T Consensus 326 ~~~~id~ 332 (796)
T PLN03138 326 NFGNLNT 332 (796)
T ss_pred cccccCC
Confidence 3334433
No 6
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=47.83 E-value=11 Score=37.20 Aligned_cols=13 Identities=38% Similarity=0.835 Sum_probs=7.0
Q ss_pred HHhhccCchhhhh
Q 017076 131 YLELEKSPVFRWL 143 (378)
Q Consensus 131 fl~l~~~p~~~~l 143 (378)
|||+...|-.|+|
T Consensus 38 YlDvkqN~rGRfl 50 (263)
T KOG3074|consen 38 YLDVKQNPRGRFL 50 (263)
T ss_pred EEEeccCCCcceE
Confidence 5666666544444
No 7
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=40.44 E-value=54 Score=28.90 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=24.1
Q ss_pred Cch-HHHHHHHHcCCC-CHHHHHHHHhhccCchhhhhhhcccchhhhccChhh
Q 017076 109 DLP-KDLAGAIEAGRV-PAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLF 159 (378)
Q Consensus 109 ~LP-~dl~~A~e~G~v-s~~~L~rfl~l~~~p~~~~l~~~~g~R~RlLADP~F 159 (378)
+.| +.|.+|++.|.+ +++++.+ -.+|||+||.+
T Consensus 17 s~PD~~L~~aA~~g~L~~~~~l~~------------------q~~RML~dpr~ 51 (128)
T PF07631_consen 17 SPPDAELLDAAAAGELRTPEQLRA------------------QAERMLADPRA 51 (128)
T ss_pred CCCCHHHHHHHHhCCCCCHHHHHH------------------HHHHHHcCccH
Confidence 456 678899999987 4455443 35799999987
No 8
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=39.85 E-value=28 Score=34.63 Aligned_cols=7 Identities=57% Similarity=1.242 Sum_probs=2.8
Q ss_pred cCCCCCC
Q 017076 66 GGGKGGG 72 (378)
Q Consensus 66 ~~gg~~~ 72 (378)
|+|++|+
T Consensus 239 g~g~~g~ 245 (271)
T COG1512 239 GSGGSGG 245 (271)
T ss_pred CCCCCCC
Confidence 3444433
No 9
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=36.10 E-value=27 Score=36.56 Aligned_cols=22 Identities=50% Similarity=1.004 Sum_probs=0.0
Q ss_pred ccCCC--CCCCCCCCCCCCCCCCC
Q 017076 65 SGGGK--GGGGSWGSGGGGGGGDD 86 (378)
Q Consensus 65 ~~~gg--~~~~~~~~gg~g~g~~~ 86 (378)
.|+|| +|-|||-||||+|||++
T Consensus 360 gg~Gg~~gGrGgGRGggG~GGGgg 383 (465)
T KOG3973|consen 360 GGSGGNWGGRGGGRGGGGRGGGGG 383 (465)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
No 10
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=31.81 E-value=45 Score=22.99 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=14.7
Q ss_pred HHHHHHcCCCCHHHHHHHHhhc
Q 017076 114 LAGAIEAGRVPAAIVKRYLELE 135 (378)
Q Consensus 114 l~~A~e~G~vs~~~L~rfl~l~ 135 (378)
|.+|.++ +++.++..+||+.+
T Consensus 9 i~eA~~~-Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 9 IKEAKES-GLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHhC
Confidence 5667665 58999999999875
No 11
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.31 E-value=7.9 Score=31.86 Aligned_cols=20 Identities=20% Similarity=0.698 Sum_probs=17.3
Q ss_pred chhhhhhhHhhhhccchhhH
Q 017076 303 IISTSVAYGVYMAVSSNLRY 322 (378)
Q Consensus 303 ~l~tal~wg~fMGvSSNlRY 322 (378)
+++++.++|+||++-+-+||
T Consensus 52 ~~~SagtFG~FM~igs~Ir~ 71 (75)
T KOG4096|consen 52 MLQSAGTFGLFMGIGSGIRC 71 (75)
T ss_pred HHhccchhhhhhhhhhheec
Confidence 56777899999999998887
No 12
>PRK05325 hypothetical protein; Provisional
Probab=30.14 E-value=56 Score=34.38 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=6.8
Q ss_pred ChHHHHHHHHHh
Q 017076 92 NCTEAIFALAKA 103 (378)
Q Consensus 92 ~r~e~~~Vl~e~ 103 (378)
.++|...+|=|-
T Consensus 103 s~eE~~~~lfEd 114 (401)
T PRK05325 103 SLEELLDLLFED 114 (401)
T ss_pred cHHHHHHHHHhh
Confidence 456666665543
No 13
>PLN02705 beta-amylase
Probab=28.31 E-value=1.1e+02 Score=34.35 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=6.4
Q ss_pred CcchhhhHHHHhh
Q 017076 248 SYSLIQRIGAIVR 260 (378)
Q Consensus 248 ~fsl~qR~~a~~~ 260 (378)
+|+--+++..++.
T Consensus 303 dWsgY~~L~~mvr 315 (681)
T PLN02705 303 VWSGYRELFNIIR 315 (681)
T ss_pred CcHHHHHHHHHHH
Confidence 4444455555444
No 14
>PHA00370 III attachment protein
Probab=27.91 E-value=54 Score=32.98 Aligned_cols=7 Identities=29% Similarity=0.729 Sum_probs=3.2
Q ss_pred cCCchhh
Q 017076 234 NCPDNAF 240 (378)
Q Consensus 234 ~lP~n~F 240 (378)
.||+-+|
T Consensus 244 ~C~~FV~ 250 (297)
T PHA00370 244 GCTPFVF 250 (297)
T ss_pred CCCccee
Confidence 4444443
No 15
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=27.73 E-value=84 Score=28.25 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=29.4
Q ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCCCCCC-CC------Ccc--hhhhhhhHhhhhc
Q 017076 261 NGAKLFAVGTSASLVGVGITNALINARKALDTSFAGEA-ED------VPI--ISTSVAYGVYMAV 316 (378)
Q Consensus 261 KG~~l~~VG~~aglvG~glsN~L~~~Rk~~d~~~~~~~-~~------pP~--l~tal~wg~fMGv 316 (378)
.++.++.|+.++-++|- +..|..+||+ ||.+-... .. .+. -..||+||..+.+
T Consensus 30 ~~~FL~~Va~~s~~aGF--~~tl~~aKKk-~p~~F~kg~~~~~~l~esGasLAlRALgWGTlyA~ 91 (124)
T PF07096_consen 30 GGAFLGGVAGASALAGF--GTTLALAKKK-SPKWFSKGISQTKALHESGASLALRALGWGTLYAV 91 (124)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHhc-CcHHHhccCcCcccCCcchHHHHHHHHhHHHHHHH
Confidence 34455567666665554 5556666777 55442222 11 111 3457899977665
No 16
>PTZ00146 fibrillarin; Provisional
Probab=26.82 E-value=61 Score=32.66 Aligned_cols=6 Identities=33% Similarity=0.889 Sum_probs=2.2
Q ss_pred hhcchh
Q 017076 259 VRNGAK 264 (378)
Q Consensus 259 ~~KG~~ 264 (378)
+.+|..
T Consensus 227 LKpGG~ 232 (293)
T PTZ00146 227 LKNGGH 232 (293)
T ss_pred ccCCCE
Confidence 333333
No 17
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=26.68 E-value=47 Score=31.65 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=30.8
Q ss_pred HHHcCCCCHHHHHHHHhhccC---chh-------hhhhhcccchhhhccChhhH
Q 017076 117 AIEAGRVPAAIVKRYLELEKS---PVF-------RWLLNFGGFRERLLADDLFL 160 (378)
Q Consensus 117 A~e~G~vs~~~L~rfl~l~~~---p~~-------~~l~~~~g~R~RlLADP~Fl 160 (378)
-+|.|.|+++.+.+.++.... |.. +|. -|.||.|||+|..=.
T Consensus 10 l~eKGli~~~~id~~i~~~~~~~gP~nGA~vVArAW~--Dp~fk~~Ll~d~~aa 61 (185)
T TIGR01323 10 LKSKGLIPEGAVDQLTSLYENEWGPENGAKVVAKAWV--DPEFRALLLKDATAA 61 (185)
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhHHhc--CHHHHHHHHhChHHH
Confidence 357899999999888876544 421 143 489999999998643
No 18
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=23.18 E-value=68 Score=33.54 Aligned_cols=11 Identities=18% Similarity=0.005 Sum_probs=5.9
Q ss_pred ChHHHHHHHHH
Q 017076 92 NCTEAIFALAK 102 (378)
Q Consensus 92 ~r~e~~~Vl~e 102 (378)
.++|...+|=|
T Consensus 115 s~eE~~~~lfE 125 (371)
T TIGR02877 115 TLEELFELLFE 125 (371)
T ss_pred cHHHHHHHHHh
Confidence 35566555544
No 19
>PLN02705 beta-amylase
Probab=22.70 E-value=1.1e+02 Score=34.13 Aligned_cols=9 Identities=11% Similarity=0.335 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 017076 279 ITNALINAR 287 (378)
Q Consensus 279 lsN~L~~~R 287 (378)
+.+.|.++|
T Consensus 270 l~a~L~aLK 278 (681)
T PLN02705 270 VRQELSHMK 278 (681)
T ss_pred HHHHHHHHH
Confidence 334444433
No 20
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=22.66 E-value=68 Score=37.63 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 017076 66 GGGKGGGGSWGSGGGGGGGDDDAGFHN 92 (378)
Q Consensus 66 ~~gg~~~~~~~~gg~g~g~~~~~~~~~ 92 (378)
|+||.+.++|.++|||||=++.++.-+
T Consensus 1252 gsGGfgrgggrgagggGgfg~G~~Gg~ 1278 (1282)
T KOG0921|consen 1252 GSGGFGRGGGRGAGGGGGFGGGGRGGN 1278 (1282)
T ss_pred CCCCcCCCCCCCCCCCCCCCCCCcccc
No 21
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=21.97 E-value=77 Score=33.65 Aligned_cols=11 Identities=27% Similarity=0.199 Sum_probs=5.7
Q ss_pred HHHHHHHHcCC
Q 017076 112 KDLAGAIEAGR 122 (378)
Q Consensus 112 ~dl~~A~e~G~ 122 (378)
+|+.+|++.++
T Consensus 46 adl~eal~~fG 56 (494)
T KOG1456|consen 46 ADLVEALSNFG 56 (494)
T ss_pred hHHHHHHhcCC
Confidence 45555555443
No 22
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=20.36 E-value=78 Score=33.11 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=7.3
Q ss_pred eeEeccCCCCCC
Q 017076 61 VIFASGGGKGGG 72 (378)
Q Consensus 61 ~~~~~~~gg~~~ 72 (378)
..+..|+||+|-
T Consensus 9 I~v~aG~GGnG~ 20 (369)
T COG0536 9 IEVKAGDGGNGC 20 (369)
T ss_pred EEEEecCCCCee
Confidence 345567777664
No 23
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=20.25 E-value=55 Score=34.70 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=9.6
Q ss_pred CceeEeccCCCCCC
Q 017076 59 PTVIFASGGGKGGG 72 (378)
Q Consensus 59 ~~~~~~~~~gg~~~ 72 (378)
.|+....+-|||||
T Consensus 464 DPLD~Es~q~GGGg 477 (504)
T KOG0624|consen 464 DPLDPESQQGGGGG 477 (504)
T ss_pred CCCChhhccCCCCC
Confidence 57777777666655
Done!