Query 017076
Match_columns 378
No_of_seqs 110 out of 142
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pk2_A Cyclin-T1, protein TAT; 93.0 0.01 3.5E-07 58.1 -1.7 9 31-39 246-254 (358)
2 2l6f_A Focal adhesion kinase 1 68.0 1.4 4.8E-05 41.1 0.0 17 85-101 195-211 (215)
3 3hht_A NitrIle hydratase alpha 50.2 10 0.00036 35.4 3.3 45 117-161 36-88 (216)
4 3qyh_A CO-type nitrIle hydrata 45.9 7.7 0.00026 36.5 1.7 42 117-160 47-98 (226)
5 2l6f_A Focal adhesion kinase 1 47.5 5.6 0.00019 37.2 0.0 11 65-75 180-190 (215)
6 1ugp_A NitrIle hydratase alpha 33.5 17 0.00057 33.7 1.8 44 117-162 27-80 (203)
7 3a8g_A NitrIle hydratase subun 31.4 12 0.00042 34.7 0.6 43 117-161 30-82 (207)
8 2zzd_C Thiocyanate hydrolase s 28.2 24 0.0008 33.5 1.9 41 117-159 38-87 (243)
9 1ypw_A Transitional endoplasmi 27.0 13 0.00046 39.7 0.0 15 70-84 778-792 (806)
10 1lnz_A SPO0B-associated GTP-bi 26.4 44 0.0015 32.0 3.5 11 62-72 9-19 (342)
11 1g3p_A G3P, minor coat protein 25.5 15 0.0005 33.7 -0.0 6 147-152 139-144 (217)
12 4fm4_A NitrIle hydratase alpha 23.4 24 0.00083 32.8 1.0 39 118-158 21-69 (209)
13 2i7u_A Four-alpha-helix bundle 21.6 29 0.00099 26.0 0.9 11 96-106 37-47 (62)
14 3u6r_H Antibody 1:7 (heavy cha 21.5 20 0.00067 30.3 0.0 6 63-68 117-122 (149)
15 1udx_A The GTP-binding protein 21.1 62 0.0021 32.0 3.5 20 272-291 305-324 (416)
16 2da3_A Alpha-fetoprotein enhan 20.8 1.9E+02 0.0066 21.3 5.5 39 95-133 27-66 (80)
No 1
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=92.98 E-value=0.01 Score=58.09 Aligned_cols=9 Identities=0% Similarity=-0.164 Sum_probs=3.9
Q ss_pred ccCCCCCcc
Q 017076 31 TRQIPNPHL 39 (378)
Q Consensus 31 ~~~~~~~~~ 39 (378)
.+.+..++.
T Consensus 246 ~~~~~~L~~ 254 (358)
T 2pk2_A 246 EKTPNRLKR 254 (358)
T ss_dssp TTCTTHHHH
T ss_pred HhCcccccc
Confidence 344444443
No 2
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=68.01 E-value=1.4 Score=41.13 Aligned_cols=17 Identities=18% Similarity=0.052 Sum_probs=9.4
Q ss_pred CCCCCCCChHHHHHHHH
Q 017076 85 DDDAGFHNCTEAIFALA 101 (378)
Q Consensus 85 ~~~~~~~~r~e~~~Vl~ 101 (378)
++.++...-.|.++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~ 211 (215)
T 2l6f_A 195 GGSGGSSATRELDELMA 211 (215)
Confidence 33455555556666654
No 3
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=50.20 E-value=10 Score=35.38 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=32.2
Q ss_pred HHHcCCCCHHHHHHHHhh-cc--Cchhh--hhh---hcccchhhhccChhhHH
Q 017076 117 AIEAGRVPAAIVKRYLEL-EK--SPVFR--WLL---NFGGFRERLLADDLFLA 161 (378)
Q Consensus 117 A~e~G~vs~~~L~rfl~l-~~--~p~~~--~l~---~~~g~R~RlLADP~Flf 161 (378)
-+|.|.|+++.+.++.+. +. .|..+ -+- .-+.||.|||+||.=..
T Consensus 36 l~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~aAi 88 (216)
T 3hht_A 36 LIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSETVL 88 (216)
T ss_dssp HHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHHH
Confidence 368899999999999986 22 45321 111 24999999999997443
No 4
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=45.90 E-value=7.7 Score=36.45 Aligned_cols=42 Identities=31% Similarity=0.429 Sum_probs=31.6
Q ss_pred HHHcCCCCHHHHHHHHh-hcc--Cchh-------hhhhhcccchhhhccChhhH
Q 017076 117 AIEAGRVPAAIVKRYLE-LEK--SPVF-------RWLLNFGGFRERLLADDLFL 160 (378)
Q Consensus 117 A~e~G~vs~~~L~rfl~-l~~--~p~~-------~~l~~~~g~R~RlLADP~Fl 160 (378)
-+|.|.|+++.+.++++ ++. .|.. +|. -+.||.|||+||.=.
T Consensus 47 L~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~--Dp~FK~rLL~D~~aA 98 (226)
T 3qyh_A 47 LIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWV--DPAYKARLLADGTAG 98 (226)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHH--CHHHHHHHHHCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhC--CHHHHHHHHHCHHHH
Confidence 36889999999999998 433 4632 143 499999999999743
No 5
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=47.46 E-value=5.6 Score=37.15 Aligned_cols=11 Identities=45% Similarity=0.761 Sum_probs=4.4
Q ss_pred ccCCCCCCCCC
Q 017076 65 SGGGKGGGGSW 75 (378)
Q Consensus 65 ~~~gg~~~~~~ 75 (378)
.|+||.||.||
T Consensus 180 ~~~~~~~~~~~ 190 (215)
T 2l6f_A 180 SGSGGSGGSGG 190 (215)
Confidence 34444444333
No 6
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=33.54 E-value=17 Score=33.68 Aligned_cols=44 Identities=32% Similarity=0.533 Sum_probs=32.4
Q ss_pred HHHcCCCCHHHHHHHHhhccC---chh-------hhhhhcccchhhhccChhhHHH
Q 017076 117 AIEAGRVPAAIVKRYLELEKS---PVF-------RWLLNFGGFRERLLADDLFLAK 162 (378)
Q Consensus 117 A~e~G~vs~~~L~rfl~l~~~---p~~-------~~l~~~~g~R~RlLADP~FlfK 162 (378)
-+|.|.|+++.+.++.+.-.. |.. +|. -|.||.|||+|+.=..|
T Consensus 27 L~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~--Dp~fk~~Ll~d~~aA~~ 80 (203)
T 1ugp_A 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWT--DPEFKKRLLADGTEACK 80 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHH--CHHHHHHHHHCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhC--CHHHHHHHHhChHHHHH
Confidence 468899999999999886333 431 243 49999999999975443
No 7
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=31.42 E-value=12 Score=34.74 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=31.6
Q ss_pred HHHcCCCCHHHHHHHHhhccC---chh-------hhhhhcccchhhhccChhhHH
Q 017076 117 AIEAGRVPAAIVKRYLELEKS---PVF-------RWLLNFGGFRERLLADDLFLA 161 (378)
Q Consensus 117 A~e~G~vs~~~L~rfl~l~~~---p~~-------~~l~~~~g~R~RlLADP~Flf 161 (378)
-+|.|+|+++.+.++.+.-.. |.. +|. -+.||.|||+|+.=..
T Consensus 30 l~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~--DP~Fk~rLL~D~~aAi 82 (207)
T 3a8g_A 30 LDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWT--DPEFRQLLLTDGTAAV 82 (207)
T ss_dssp HHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHH--CHHHHHHHHHCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhC--CHHHHHHHHHCHHHHH
Confidence 467899999999999886333 431 244 3899999999997443
No 8
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=28.17 E-value=24 Score=33.50 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=30.3
Q ss_pred HHHcCCCCHHHHHHHHhhc-c-Cchh-------hhhhhcccchhhhccChhh
Q 017076 117 AIEAGRVPAAIVKRYLELE-K-SPVF-------RWLLNFGGFRERLLADDLF 159 (378)
Q Consensus 117 A~e~G~vs~~~L~rfl~l~-~-~p~~-------~~l~~~~g~R~RlLADP~F 159 (378)
.+|.|+|+++.+.++.+.- . .|.. +|+ -+.||+|||+|+.=
T Consensus 38 L~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~--DP~fk~~Ll~d~~a 87 (243)
T 2zzd_C 38 AIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWL--DPEYKKLCIEDGVE 87 (243)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHH--CHHHHHHHHHCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecC--CHHHHHHHHHChHH
Confidence 4688999999999998852 2 3531 244 38999999999863
No 9
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=27.00 E-value=13 Score=39.66 Aligned_cols=15 Identities=47% Similarity=0.911 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q 017076 70 GGGGSWGSGGGGGGG 84 (378)
Q Consensus 70 ~~~~~~~~gg~g~g~ 84 (378)
+++++.++|+||++|
T Consensus 778 ~~~~~~~~~~~~~~~ 792 (806)
T 1ypw_A 778 QGGAGPSQGSGGGTG 792 (806)
T ss_dssp ---------------
T ss_pred cccCCCCCCCCCCCC
Confidence 333444444443333
No 10
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=26.39 E-value=44 Score=32.02 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=5.6
Q ss_pred eEeccCCCCCC
Q 017076 62 IFASGGGKGGG 72 (378)
Q Consensus 62 ~~~~~~gg~~~ 72 (378)
.+-.|+||+|-
T Consensus 9 ~~~~g~gg~g~ 19 (342)
T 1lnz_A 9 YVKGGDGGNGM 19 (342)
T ss_dssp EEECCCCCCCC
T ss_pred EEEecCCCCce
Confidence 34455555553
No 11
>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage display, selectively infective phages, viral protein; HET: TRO; 1.46A {Enterobacteria phage M13} SCOP: b.37.1.1 b.37.1.1 PDB: 2g3p_A 3dgs_A 3knq_A 1fgp_A
Probab=25.47 E-value=15 Score=33.68 Aligned_cols=6 Identities=50% Similarity=0.927 Sum_probs=2.5
Q ss_pred ccchhh
Q 017076 147 GGFRER 152 (378)
Q Consensus 147 ~g~R~R 152 (378)
.-||+|
T Consensus 139 ~~~~~~ 144 (217)
T 1g3p_A 139 NRFRNR 144 (217)
T ss_dssp EEEEEE
T ss_pred cccccc
Confidence 334444
No 12
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=23.40 E-value=24 Score=32.80 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=29.3
Q ss_pred HHcCCCCHHHHHHHHhh-cc--Cch------h-hhhhhcccchhhhccChh
Q 017076 118 IEAGRVPAAIVKRYLEL-EK--SPV------F-RWLLNFGGFRERLLADDL 158 (378)
Q Consensus 118 ~e~G~vs~~~L~rfl~l-~~--~p~------~-~~l~~~~g~R~RlLADP~ 158 (378)
+|.|+|.++.+..|.+. +. .|. . +|. -+.||+|||+|+.
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~--Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWT--DPVFKAQLLSEGV 69 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHH--CHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhC--CHHHHHHHHHHHH
Confidence 47899999999999983 32 253 1 254 3899999999995
No 13
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=21.63 E-value=29 Score=25.95 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=4.5
Q ss_pred HHHHHHHhccc
Q 017076 96 AIFALAKAGRT 106 (378)
Q Consensus 96 ~~~Vl~e~~r~ 106 (378)
.+..-.|+.+.
T Consensus 37 lmklceeaakk 47 (62)
T 2i7u_A 37 LMKLCEEAAKK 47 (62)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 14
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=21.54 E-value=20 Score=30.26 Aligned_cols=6 Identities=33% Similarity=0.124 Sum_probs=3.1
Q ss_pred EeccCC
Q 017076 63 FASGGG 68 (378)
Q Consensus 63 ~~~~~g 68 (378)
..+|.|
T Consensus 117 ~~fG~G 122 (149)
T 3u6r_H 117 DYWGQG 122 (149)
T ss_dssp EEECCC
T ss_pred eEECCC
Confidence 445555
No 15
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=21.13 E-value=62 Score=32.02 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHHHHHHhhcC
Q 017076 272 ASLVGVGITNALINARKALD 291 (378)
Q Consensus 272 aglvG~glsN~L~~~Rk~~d 291 (378)
+..-+.++...+-.+.+.+.
T Consensus 305 SA~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 305 SALTGAGLPALKEALHALVR 324 (416)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHHHH
Confidence 33444555555555444443
No 16
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=20.78 E-value=1.9e+02 Score=21.30 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=21.6
Q ss_pred HHHHHHHHhccccCCchH-HHHHHHHcCCCCHHHHHHHHh
Q 017076 95 EAIFALAKAGRTLGDLPK-DLAGAIEAGRVPAAIVKRYLE 133 (378)
Q Consensus 95 e~~~Vl~e~~r~~~~LP~-dl~~A~e~G~vs~~~L~rfl~ 133 (378)
+-..+|.+++..-.-... +..+-++.=.++..++..||.
T Consensus 27 ~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFq 66 (80)
T 2da3_A 27 EQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQ 66 (80)
T ss_dssp TTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhH
Confidence 445667777765444333 333333444577777777663
Done!