Query 017076
Match_columns 378
No_of_seqs 110 out of 142
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 08:32:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017076.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017076hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v29a_ d.149.1.1 (A:) Cobalt- 51.8 2.9 0.00021 36.6 2.0 40 117-158 26-75 (203)
2 d1ugpa_ d.149.1.1 (A:) Cobalt- 48.8 3.2 0.00024 36.3 1.8 40 117-158 27-76 (203)
3 d2qdya1 d.149.1.1 (A:10-206) I 33.5 5 0.00037 34.9 0.6 39 118-158 22-70 (197)
4 d1x3zb1 a.189.1.1 (B:253-309) 32.4 9.5 0.00069 26.7 1.8 23 145-167 34-56 (57)
5 d1bh9b_ a.22.1.3 (B:) TAF(II)2 22.5 32 0.0023 26.0 3.4 26 94-119 55-80 (89)
6 d1wi3a_ a.4.1.1 (A:) DNA-bindi 17.5 1.4E+02 0.01 20.4 5.9 40 94-133 16-57 (71)
7 d1vz0a1 a.4.14.1 (A:116-208) P 13.4 63 0.0046 23.9 3.1 30 106-135 41-70 (93)
8 d1qusa_ d.2.1.6 (A:) 36 kDa so 13.1 60 0.0044 29.3 3.4 59 112-191 100-158 (322)
9 d1udxa1 b.117.1.1 (A:1-156) Ob 12.6 73 0.0054 25.7 3.5 12 61-72 8-19 (156)
10 d1b0na1 a.34.1.1 (A:74-108) Si 11.9 77 0.0056 20.1 2.6 22 114-136 9-30 (35)
No 1
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=51.82 E-value=2.9 Score=36.58 Aligned_cols=40 Identities=28% Similarity=0.485 Sum_probs=30.8
Q ss_pred HHHcCCCCHHHHHHHHh-hccC--chh-------hhhhhcccchhhhccChh
Q 017076 117 AIEAGRVPAAIVKRYLE-LEKS--PVF-------RWLLNFGGFRERLLADDL 158 (378)
Q Consensus 117 A~e~G~vs~~~L~rfl~-l~~~--p~~-------~~l~~~~g~R~RlLADP~ 158 (378)
-+|.|+|+++.+.+.++ ++.+ |.. +|+ -+.||+|||+|+.
T Consensus 26 LieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~--Dp~FK~rLL~D~~ 75 (203)
T d1v29a_ 26 LIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWT--DPEFKQRLLEDPE 75 (203)
T ss_dssp HHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTT--CHHHHHHHHHSHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhc--CHHHHHHHHHCHH
Confidence 36899999999999998 4443 532 144 3899999999986
No 2
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=48.79 E-value=3.2 Score=36.27 Aligned_cols=40 Identities=35% Similarity=0.643 Sum_probs=31.1
Q ss_pred HHHcCCCCHHHHHHHHhh-cc--Cchh-------hhhhhcccchhhhccChh
Q 017076 117 AIEAGRVPAAIVKRYLEL-EK--SPVF-------RWLLNFGGFRERLLADDL 158 (378)
Q Consensus 117 A~e~G~vs~~~L~rfl~l-~~--~p~~-------~~l~~~~g~R~RlLADP~ 158 (378)
-+|.|+|+++.+.++++. +. .|.. +|. -+.||.|||+|+.
T Consensus 27 LieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~--Dp~FK~rLL~D~~ 76 (203)
T d1ugpa_ 27 LIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWT--DPEFKKRLLADGT 76 (203)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHH--CHHHHHHHHHCHH
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhC--CHHHHHHHHHHHH
Confidence 468899999999999994 43 3642 254 3899999999986
No 3
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=33.49 E-value=5 Score=34.86 Aligned_cols=39 Identities=31% Similarity=0.444 Sum_probs=30.1
Q ss_pred HHcCCCCHHHHHHHHhh-ccC--chh-------hhhhhcccchhhhccChh
Q 017076 118 IEAGRVPAAIVKRYLEL-EKS--PVF-------RWLLNFGGFRERLLADDL 158 (378)
Q Consensus 118 ~e~G~vs~~~L~rfl~l-~~~--p~~-------~~l~~~~g~R~RlLADP~ 158 (378)
+|.|+|+++.+.++++. +.+ |.. +|. -+.||.|||+||.
T Consensus 22 ieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~--Dp~FK~rLL~D~~ 70 (197)
T d2qdya1 22 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWT--DPEFRQLLLTDGT 70 (197)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHH--CHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhC--CHHHHHHHHHHHH
Confidence 47899999999999984 444 532 244 3899999999986
No 4
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.39 E-value=9.5 Score=26.74 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=19.9
Q ss_pred hcccchhhhccChhhHHHHHHHh
Q 017076 145 NFGGFRERLLADDLFLAKVAMEC 167 (378)
Q Consensus 145 ~~~g~R~RlLADP~FlfKl~~E~ 167 (378)
|+|-+|+-+++||.-...++.|-
T Consensus 34 ryp~lre~im~npe~fismllea 56 (57)
T d1x3zb1 34 RYPQLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp TCHHHHHHHHTCHHHHHHHHHHC
T ss_pred hhHHHHHHHHhCHHHHHHHHHhh
Confidence 68999999999999877777764
No 5
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.46 E-value=32 Score=26.00 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.1
Q ss_pred HHHHHHHHHhccccCCchHHHHHHHH
Q 017076 94 TEAIFALAKAGRTLGDLPKDLAGAIE 119 (378)
Q Consensus 94 ~e~~~Vl~e~~r~~~~LP~dl~~A~e 119 (378)
|++..|+.||+.+..=.|..|++|+.
T Consensus 55 E~A~~V~~~~~e~~PL~P~HireA~r 80 (89)
T d1bh9b_ 55 EEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp HHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 56778999999999999999999975
No 6
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.50 E-value=1.4e+02 Score=20.44 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=27.7
Q ss_pred HHHHHHHHHhccccCCch--HHHHHHHHcCCCCHHHHHHHHh
Q 017076 94 TEAIFALAKAGRTLGDLP--KDLAGAIEAGRVPAAIVKRYLE 133 (378)
Q Consensus 94 ~e~~~Vl~e~~r~~~~LP--~dl~~A~e~G~vs~~~L~rfl~ 133 (378)
+|-.++|++++....--| .+..+-++.-+++..+++.||.
T Consensus 16 ~~Q~~~Le~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WFq 57 (71)
T d1wi3a_ 16 LEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQ 57 (71)
T ss_dssp SHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhH
Confidence 567888999986544444 4444555666789999888774
No 7
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=13.44 E-value=63 Score=23.87 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=23.1
Q ss_pred ccCCchHHHHHHHHcCCCCHHHHHHHHhhc
Q 017076 106 TLGDLPKDLAGAIEAGRVPAAIVKRYLELE 135 (378)
Q Consensus 106 ~~~~LP~dl~~A~e~G~vs~~~L~rfl~l~ 135 (378)
++.+||.++++++..|.|+-..-...+.+.
T Consensus 41 rLl~L~~~v~~~l~~g~Is~ghAr~L~~l~ 70 (93)
T d1vz0a1 41 RLLQLPPEALEALERGEITAGHARALLMLE 70 (93)
T ss_dssp HGGGSCHHHHHHHHTTSSCHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHCCC
Confidence 356889999999999999887766665553
No 8
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=13.10 E-value=60 Score=29.33 Aligned_cols=59 Identities=24% Similarity=0.210 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHhhccCchhhhhhhcccchhhhccChhhHHHHHHHhhhhhhhhHHHHHhhcccchHhHHH
Q 017076 112 KDLAGAIEAGRVPAAIVKRYLELEKSPVFRWLLNFGGFRERLLADDLFLAKVAMECGVGVFTKTAAELERRRENFSKELD 191 (378)
Q Consensus 112 ~dl~~A~e~G~vs~~~L~rfl~l~~~p~~~~l~~~~g~R~RlLADP~FlfKl~~E~~i~v~~~~~aE~~~Rge~F~~ElD 191 (378)
.-|.++-+.-+|++++++.+.-+|.+= .+-.-.+ -++++-+++..|+.+|.+-|.+||-
T Consensus 100 ~~l~~~e~~yGV~~~ii~aiwgvET~y-G~~~G~~--------------------~v~~aLaTLAf~~~rR~~ff~~EL~ 158 (322)
T d1qusa_ 100 DALNRAWQVYGVPPEIIVGIIGVETRW-GRVMGKT--------------------RILDALATLSFNYPRRAEYFSGELE 158 (322)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHTT-TTCCCCE--------------------EHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhch-hhhcCCC--------------------cchhhhhhhhhcccchhhhhhHHHH
Confidence 345667777889999999998888772 1111111 2667777888899888788888986
No 9
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=12.56 E-value=73 Score=25.70 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=7.4
Q ss_pred eeEeccCCCCCC
Q 017076 61 VIFASGGGKGGG 72 (378)
Q Consensus 61 ~~~~~~~gg~~~ 72 (378)
+.+..|+||+|-
T Consensus 8 i~v~~G~GG~G~ 19 (156)
T d1udxa1 8 ITVAAGRGGDGA 19 (156)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEecCCCCCc
Confidence 455667777663
No 10
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=11.86 E-value=77 Score=20.06 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=17.2
Q ss_pred HHHHHHcCCCCHHHHHHHHhhcc
Q 017076 114 LAGAIEAGRVPAAIVKRYLELEK 136 (378)
Q Consensus 114 l~~A~e~G~vs~~~L~rfl~l~~ 136 (378)
.++|.+ -+||++|...||++++
T Consensus 9 VkeAM~-SGvSK~QFrEflef~k 30 (35)
T d1b0na1 9 VRDAMT-SGVSKKQFREFLDYQK 30 (35)
T ss_dssp HHHHHH-SCCCHHHHHHHHHHHH
T ss_pred HHHHHH-ccCCHHHHHHHHHHHH
Confidence 456655 5699999999999764
Done!