Citrus Sinensis ID: 017077

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
cccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEcccccccccccccccccccccEEEEEEcHHHHHHHHHHHccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHEEEEEEEEcccccccEEEEEEEcccccccccccEEEEEcccccccccEEEEccccEEEcHHHHHHHHHHccccccccEEcEEEEEEEcccc
cccccccccEEEEEcccccHHHHHHHHHHccccEEEEEEccccccccccccccccccEEEEEEEEEHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEcHHHccccEEEEEEcccccccccccEEEEEccccccccccEEEccccEEcccEEEEEEEHHcHHcccccEEEEEEEEEEEccc
mpkhkyagdvimvdrgnckfttKANIAEAAGASALLIINNQKELYkmvcdpdetdldihipavmmpqdagASLEKMLLNTSSVsvqlysprrpvvDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVdeipdakavgVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAgesfikvpffgavshltlAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIvhipnlkvGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARgdksgedgipmllkiprmfdpwggysiigfgdillPGLIIAFSLRFklsdlsshhipisalysqafts
mpkhkyagdvimVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVArgdksgedgiPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSshhipisalysqafts
MPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
*****YAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALY******
**KHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYK******ETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARET*************************VVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFT*
MPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
*PKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIE********************SGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
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MPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
Q8W469540 Signal peptide peptidase- yes no 0.933 0.653 0.819 1e-173
Q5Z413542 Signal peptide peptidase- yes no 0.939 0.654 0.738 1e-158
Q0DWA9545 Signal peptide peptidase- no no 0.936 0.649 0.760 1e-154
Q0WMJ8540 Signal peptide peptidase- no no 0.939 0.657 0.731 1e-153
Q53P98534 Signal peptide peptidase- no no 0.928 0.657 0.519 1e-108
Q4V3B8540 Signal peptide peptidase- no no 0.931 0.651 0.485 2e-96
Q9MA44536 Signal peptide peptidase- no no 0.904 0.638 0.475 2e-86
Q5N808523 Signal peptide peptidase- no no 0.910 0.657 0.429 3e-79
Q8TCT7 592 Signal peptide peptidase- yes no 0.902 0.576 0.318 3e-41
Q5PQL3 577 Signal peptide peptidase- yes no 0.920 0.603 0.298 5e-41
>sp|Q8W469|SIPL2_ARATH Signal peptide peptidase-like 2 OS=Arabidopsis thaliana GN=SPPL2 PE=2 SV=1 Back     alignment and function desciption
 Score =  609 bits (1570), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 290/354 (81%), Positives = 329/354 (92%), Gaps = 1/354 (0%)

Query: 3   KHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPA 62
           K+K +GDV++V+RGNC+FT KAN AEAAGASALLIINNQKELYKMVC+PDETDLDI IPA
Sbjct: 100 KNKLSGDVVIVERGNCRFTAKANNAEAAGASALLIINNQKELYKMVCEPDETDLDIQIPA 159

Query: 63  VMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSAR 122
           VM+PQDAGASL+KML N+S VS QLYSPRRP VDVAEVFLWLMA+GTILCASYWSAWSAR
Sbjct: 160 VMLPQDAGASLQKMLANSSKVSAQLYSPRRPAVDVAEVFLWLMAIGTILCASYWSAWSAR 219

Query: 123 ETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLE 182
           E AIE +KLLKDA+DEIP+    G SGVV+IN+ SA+ FV++AS FLV+LYKLMS WF+E
Sbjct: 220 EAAIEHDKLLKDAIDEIPNTNDGG-SGVVEINSISAIFFVVLASGFLVILYKLMSYWFVE 278

Query: 183 LLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVW 242
           LLV++FCIGGVEGLQTCLVALLSRWF+RA ++++KVPF G +S+LTLAV+PFCI FAV+W
Sbjct: 279 LLVVVFCIGGVEGLQTCLVALLSRWFQRAADTYVKVPFLGPISYLTLAVSPFCIVFAVLW 338

Query: 243 AIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHE 302
           A+YR  SFAWIGQD+LGIALIITVLQIVH+PNLKVGTVLLSCAF+YDIFWVFVSKKLFHE
Sbjct: 339 AVYRVHSFAWIGQDVLGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHE 398

Query: 303 SVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRF 356
           SVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGL+IAF+LR+
Sbjct: 399 SVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLLIAFALRY 452
Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q5Z413|SIPL5_ORYSJ Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica GN=SPPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q0DWA9|SIPL4_ORYSJ Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica GN=SPPL4 PE=2 SV=1 Back     alignment and function description
>sp|Q0WMJ8|SIPL4_ARATH Signal peptide peptidase-like 4 OS=Arabidopsis thaliana GN=SPPL4 PE=2 SV=1 Back     alignment and function description
>sp|Q53P98|SIPL2_ORYSJ Signal peptide peptidase-like 2 OS=Oryza sativa subsp. japonica GN=SPPL2 PE=2 SV=1 Back     alignment and function description
>sp|Q4V3B8|SIPL3_ARATH Signal peptide peptidase-like 3 OS=Arabidopsis thaliana GN=SPPL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9MA44|SIPL5_ARATH Signal peptide peptidase-like 5 OS=Arabidopsis thaliana GN=SPPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q5N808|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica GN=SPPL3 PE=2 SV=1 Back     alignment and function description
>sp|Q8TCT7|SPP2B_HUMAN Signal peptide peptidase-like 2B OS=Homo sapiens GN=SPPL2B PE=1 SV=2 Back     alignment and function description
>sp|Q5PQL3|SPP2B_RAT Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
224071926 541 predicted protein [Populus trichocarpa] 0.939 0.656 0.884 0.0
359474199 548 PREDICTED: signal peptide peptidase-like 0.939 0.647 0.876 0.0
16118856 537 growth-on protein GRO10 [Euphorbia esula 0.939 0.661 0.864 0.0
255537495 542 Minor histocompatibility antigen H13, pu 0.939 0.654 0.870 0.0
224058471 541 predicted protein [Populus trichocarpa] 0.947 0.661 0.849 1e-180
449452304 545 PREDICTED: signal peptide peptidase-like 0.941 0.653 0.837 1e-177
12324949 519 unknown protein; 50290-46846 [Arabidopsi 0.933 0.680 0.819 1e-172
18407872 540 signal peptide peptidase-like 2 [Arabido 0.933 0.653 0.819 1e-172
42571983 540 signal peptide peptidase-like 2 [Arabido 0.933 0.653 0.816 1e-171
297840125 540 protease-associated domain-containing pr 0.933 0.653 0.816 1e-171
>gi|224071926|ref|XP_002303595.1| predicted protein [Populus trichocarpa] gi|222841027|gb|EEE78574.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/355 (88%), Positives = 339/355 (95%)

Query: 2   PKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIP 61
           PKHK  GDVIMV RG+CKFTTKAN AEAAGASALLIINNQKELYKMVC+PDETDLDIHIP
Sbjct: 99  PKHKLDGDVIMVHRGHCKFTTKANNAEAAGASALLIINNQKELYKMVCEPDETDLDIHIP 158

Query: 62  AVMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSA 121
           AVM+PQDAG+SLEKMLL  SSVSVQLYSPRRP+VD+AEVFLWLMAVGTILCASYWSAWSA
Sbjct: 159 AVMLPQDAGSSLEKMLLTNSSVSVQLYSPRRPLVDIAEVFLWLMAVGTILCASYWSAWSA 218

Query: 122 RETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFL 181
           RE AIEQ+KLLKDAVDEIP+ KAVG S VVDINT SAVLFV++ASCFLV+LYKLMS WF+
Sbjct: 219 REAAIEQDKLLKDAVDEIPNEKAVGFSTVVDINTTSAVLFVVIASCFLVILYKLMSYWFI 278

Query: 182 ELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVV 241
           ELLV+LFCIGGVEGLQTCLVALLSRWF+ AGES+IKVPFFG +S+LTLAV PFCIAFAVV
Sbjct: 279 ELLVVLFCIGGVEGLQTCLVALLSRWFKHAGESYIKVPFFGPLSYLTLAVAPFCIAFAVV 338

Query: 242 WAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH 301
           WA+YR VSFAWIGQDILGIALIITVLQIVH+PNLKVGTVLLSCAF+YDIFWVFVSKK+FH
Sbjct: 339 WAVYRTVSFAWIGQDILGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKVFH 398

Query: 302 ESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRF 356
           ESVMIVVARGD+SGEDGIPMLLKIPR+FDPWGGYSIIGFGDILLPGL+IAFSLR+
Sbjct: 399 ESVMIVVARGDRSGEDGIPMLLKIPRLFDPWGGYSIIGFGDILLPGLLIAFSLRY 453

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474199|ref|XP_002274996.2| PREDICTED: signal peptide peptidase-like 2B-like [Vitis vinifera] gi|297742511|emb|CBI34660.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|16118856|gb|AAL14629.1|AF417576_1 growth-on protein GRO10 [Euphorbia esula] Back     alignment and taxonomy information
>gi|255537495|ref|XP_002509814.1| Minor histocompatibility antigen H13, putative [Ricinus communis] gi|223549713|gb|EEF51201.1| Minor histocompatibility antigen H13, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224058471|ref|XP_002299526.1| predicted protein [Populus trichocarpa] gi|222846784|gb|EEE84331.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449452304|ref|XP_004143899.1| PREDICTED: signal peptide peptidase-like 2-like [Cucumis sativus] gi|449495775|ref|XP_004159941.1| PREDICTED: signal peptide peptidase-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|12324949|gb|AAG52428.1|AC011622_16 unknown protein; 50290-46846 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18407872|ref|NP_564815.1| signal peptide peptidase-like 2 [Arabidopsis thaliana] gi|75248730|sp|Q8W469.1|SIPL2_ARATH RecName: Full=Signal peptide peptidase-like 2; Short=AtSPPL2; Flags: Precursor gi|17065462|gb|AAL32885.1| Unknown protein [Arabidopsis thaliana] gi|31711956|gb|AAP68334.1| At1g63690 [Arabidopsis thaliana] gi|332196013|gb|AEE34134.1| signal peptide peptidase-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42571983|ref|NP_974082.1| signal peptide peptidase-like 2 [Arabidopsis thaliana] gi|332196012|gb|AEE34133.1| signal peptide peptidase-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297840125|ref|XP_002887944.1| protease-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333785|gb|EFH64203.1| protease-associated domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
TAIR|locus:2026684540 SPPL2 "SIGNAL PEPTIDE PEPTIDAS 0.933 0.653 0.816 1.8e-158
TAIR|locus:2198155540 SPPL4 "SIGNAL PEPTIDE PEPTIDAS 0.939 0.657 0.731 7.8e-142
TAIR|locus:2040971540 SPPL3 "SIGNAL PEPTIDE PEPTIDAS 0.923 0.646 0.489 1.9e-90
TAIR|locus:2198733536 SPPL5 "SIGNAL PEPTIDE PEPTIDAS 0.931 0.656 0.464 6.9e-86
UNIPROTKB|Q8TCT7 592 SPPL2B "Signal peptide peptida 0.915 0.584 0.313 1e-43
UNIPROTKB|F1S8G9 585 LOC100515648 "Uncharacterized 0.925 0.598 0.306 2.2e-43
UNIPROTKB|F1Q1B4 580 SPPL2B "Uncharacterized protei 0.920 0.6 0.310 4.5e-43
UNIPROTKB|J9P0Q5 650 SPPL2B "Uncharacterized protei 0.920 0.535 0.310 4.5e-43
RGD|1308556 577 Sppl2b "signal peptide peptida 0.920 0.603 0.300 2.5e-42
UNIPROTKB|Q5PQL3 577 Sppl2b "Signal peptide peptida 0.920 0.603 0.300 2.5e-42
TAIR|locus:2026684 SPPL2 "SIGNAL PEPTIDE PEPTIDASE-LIKE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1544 (548.6 bits), Expect = 1.8e-158, P = 1.8e-158
 Identities = 289/354 (81%), Positives = 328/354 (92%)

Query:     3 KHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPA 62
             K+K +GDV++V+RGNC+FT KAN AEAAGASALLIINNQKELYKMVC+PDETDLDI IPA
Sbjct:   100 KNKLSGDVVIVERGNCRFTAKANNAEAAGASALLIINNQKELYKMVCEPDETDLDIQIPA 159

Query:    63 VMMPQDAGASLEKMLLNTSSVSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSAR 122
             VM+PQDAGASL+KML N+S VS QLYSPRRP VDVAEVFLWLMA+GTILCASYWSAWSAR
Sbjct:   160 VMLPQDAGASLQKMLANSSKVSAQLYSPRRPAVDVAEVFLWLMAIGTILCASYWSAWSAR 219

Query:   123 ETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKLMSNWFLE 182
             E AIE +KLLKDA+DEIP+    G SGVV+IN+ SA+ FV++AS FLV+LYKLMS WF+E
Sbjct:   220 EAAIEHDKLLKDAIDEIPNTNDGG-SGVVEINSISAIFFVVLASGFLVILYKLMSYWFVE 278

Query:   183 LLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVW 242
             LLV++FCIGGVEGLQTCLVALLSRWF+RA ++++KVPF G +S+LTLAV+PFCI FAV+W
Sbjct:   279 LLVVVFCIGGVEGLQTCLVALLSRWFQRAADTYVKVPFLGPISYLTLAVSPFCIVFAVLW 338

Query:   243 AIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHE 302
             A+YR  SFAWIGQD+LGIALIITVLQIVH+PNLKVGTVLLSCAF+YDIFWVFVSKKLFHE
Sbjct:   339 AVYRVHSFAWIGQDVLGIALIITVLQIVHVPNLKVGTVLLSCAFLYDIFWVFVSKKLFHE 398

Query:   303 SVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLIIAFSLRF 356
             SVMIVV RGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGL+IAF+LR+
Sbjct:   399 SVMIVVTRGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLLIAFALRY 452
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006508 "proteolysis" evidence=ISS
GO:0008233 "peptidase activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0005768 "endosome" evidence=IDA
TAIR|locus:2198155 SPPL4 "SIGNAL PEPTIDE PEPTIDASE-LIKE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040971 SPPL3 "SIGNAL PEPTIDE PEPTIDASE-LIKE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198733 SPPL5 "SIGNAL PEPTIDE PEPTIDASE-LIKE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TCT7 SPPL2B "Signal peptide peptidase-like 2B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S8G9 LOC100515648 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q1B4 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0Q5 SPPL2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1308556 Sppl2b "signal peptide peptidase-like 2B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5PQL3 Sppl2b "Signal peptide peptidase-like 2B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5Z413SIPL5_ORYSJ3, ., 4, ., 2, 3, ., -0.73800.93910.6549yesno
Q8W469SIPL2_ARATH3, ., 4, ., 2, 3, ., -0.81920.93380.6537yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.23LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_III1147
hypothetical protein (541 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
pfam04258291 pfam04258, Peptidase_A22B, Signal peptide peptidas 4e-73
smart00730249 smart00730, PSN, Presenilin, signal peptide peptid 7e-48
cd02132139 cd02132, PA_GO-like, PA_GO-like: Protease-associat 6e-38
cd00538126 cd00538, PA, PA: Protease-associated (PA) domain 1e-13
cd04818118 cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas 8e-13
pfam0222596 pfam02225, PA, PA domain 1e-11
cd02127118 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease- 8e-10
cd02125127 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) 9e-10
cd04816122 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease- 5e-07
cd02123153 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a 1e-06
cd02126126 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as 5e-06
cd02129120 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as 5e-06
cd02133143 cd02133, PA_C5a_like, PA_C5a_like: Protease-associ 2e-05
cd02130122 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-as 3e-05
cd02122138 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a 2e-04
cd04813117 cd04813, PA_1, PA_1: Protease-associated (PA) doma 5e-04
>gnl|CDD|217991 pfam04258, Peptidase_A22B, Signal peptide peptidase Back     alignment and domain information 
 Score =  229 bits (585), Expect = 4e-73
 Identities = 93/232 (40%), Positives = 123/232 (53%), Gaps = 17/232 (7%)

Query: 150 VVDINTASAVLFVLVASCFLVMLYKLMSNWFLE------LLVILFCIGGVEGLQ-TCLVA 202
              I++  A++F + ASC L+ LY    +   E      +L   FCI G   L    L  
Sbjct: 6   TGTIDSRHAIIFPISASCTLLGLYLFFKSLSKEYINSVLVLTGYFCILGAIALAFLILPP 65

Query: 203 LLSRWFRRAGESFIKVP-----FFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDI 257
            + R        F K         G  ++  L     CI FAV W + RK    WI QDI
Sbjct: 66  CIRRLSFMGAYRFPKKKSKLELKNGRFTYSELVALLLCIVFAVWWYVLRKEH--WILQDI 123

Query: 258 LGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGED 317
           LGIAL I V++I+ +PNLKVGT+LLS  F YDIFWVF+S  +F  SVM+ VA G     +
Sbjct: 124 LGIALCINVIKILRLPNLKVGTILLSGLFFYDIFWVFISPYIFGTSVMVTVATGPFDAAE 183

Query: 318 GIPMLLKIPRMFD---PWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHI 366
            +PM L  PR+ D    WG +S++G GDI++PGL+IAF LRF +S   S   
Sbjct: 184 KLPMKLVFPRLNDYPGNWGPFSMLGLGDIVMPGLLIAFCLRFDISKNKSSRT 235

The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B, the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080. Length = 291
>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family Back     alignment and domain information
>gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain Back     alignment and domain information
>gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>gnl|CDD|216938 pfam02225, PA, PA domain Back     alignment and domain information
>gnl|CDD|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>gnl|CDD|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information
>gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>gnl|CDD|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>gnl|CDD|239045 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>gnl|CDD|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
KOG2442541 consensus Uncharacterized conserved protein, conta 100.0
KOG2443362 consensus Uncharacterized conserved protein [Funct 100.0
PF04258298 Peptidase_A22B: Signal peptide peptidase; InterPro 100.0
smart00730249 PSN Presenilin, signal peptide peptidase, family. 100.0
cd02132139 PA_GO-like PA_GO-like: Protease-associated domain 99.76
cd02125127 PA_VSR PA_VSR: Protease-associated (PA) domain-con 99.76
cd02129120 PA_hSPPL_like PA_hSPPL_like: Protease-associated d 99.75
cd02127118 PA_hPAP21_like PA_hPAP21_like: Protease-associated 99.74
cd02126126 PA_EDEM3_like PA_EDEM3_like: protease associated d 99.72
cd02122138 PA_GRAIL_like PA _GRAIL_like: Protease-associated 99.7
cd04813117 PA_1 PA_1: Protease-associated (PA) domain subgrou 99.66
cd04817139 PA_VapT_like PA_VapT_like: Protease-associated dom 99.65
cd02123153 PA_C_RZF_like PA_C-RZF_ like: Protease-associated 99.65
cd02130122 PA_ScAPY_like PA_ScAPY_like: Protease-associated d 99.65
cd04816122 PA_SaNapH_like PA_SaNapH_like: Protease-associated 99.64
cd02124129 PA_PoS1_like PA_PoS1_like: Protease-associated (PA 99.6
PF02225101 PA: PA domain; InterPro: IPR003137 The PA (Proteas 99.53
cd04818118 PA_subtilisin_1 PA_subtilisin_1: Protease-associat 99.52
cd00538126 PA PA: Protease-associated (PA) domain. The PA dom 99.51
cd02133143 PA_C5a_like PA_C5a_like: Protease-associated domai 99.41
PF06550283 DUF1119: Protein of unknown function (DUF1119); In 99.4
cd04819127 PA_2 PA_2: Protease-associated (PA) domain subgrou 99.38
cd04815134 PA_M28_2 PA_M28_2: Protease-associated (PA) domain 99.26
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 99.2
COG3389277 Uncharacterized protein conserved in archaea [Func 99.19
cd02120126 PA_subtilisin_like PA_subtilisin_like: Protease-as 99.12
KOG3920193 consensus Uncharacterized conserved protein, conta 98.89
cd02128183 PA_TfR PA_TfR: Protease-associated domain containi 98.87
cd02121220 PA_GCPII_like PA_GCPII_like: Protease-associated d 98.34
cd02131153 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso 98.18
cd04822151 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do 98.16
cd04814142 PA_M28_1 PA_M28_1: Protease-associated (PA) domain 98.15
cd04820137 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do 98.05
cd04821157 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do 96.05
KOG2195 702 consensus Transferrin receptor and related protein 80.41
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-91  Score=692.50  Aligned_cols=365  Identities=52%  Similarity=0.878  Sum_probs=339.2

Q ss_pred             CCCCCCcEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccccccccccCCCCCCCCcceeEEEEehhchHhHHHHhhccce
Q 017077            3 KHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS   82 (378)
Q Consensus         3 ~~~l~g~IaLV~RG~CtF~~K~~nAq~aGA~avIV~n~~~~~~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~l~~G~~   82 (378)
                      ...+++++++|.||||+|.+|+++||++||.|+++.||.+++..|++.+.++..+++||+++|++++|+.+.+....+++
T Consensus        91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~  170 (541)
T KOG2442|consen   91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN  170 (541)
T ss_pred             CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence            45789999999999999999999999999999999999988888998877778899999999999999999988888999


Q ss_pred             EEEEEecCCCCccchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcccCCCCccccccCCCCeeeecccchhhHH
Q 017077           83 VSVQLYSPRRPVVDVAEVFLWLMAVGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFV  162 (378)
Q Consensus        83 V~v~l~~p~~~~~D~s~~~l~l~Av~tv~~gs~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~fp  162 (378)
                      |++.+|+|++|.+|++.+++|+||++||.+|+|||.+++||+..|+++.++|..+++.+.+|.+|++..++|+..|+.|+
T Consensus       171 V~~~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~~fv  250 (541)
T KOG2442|consen  171 VELALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAVFFV  250 (541)
T ss_pred             EEEEEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEEEeh
Confidence            99999999999999999999999999999999999999999877777766666665556677788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCceeeeccccccccchhhhhhhHHHHHhhh
Q 017077          163 LVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVW  242 (378)
Q Consensus       163 v~~s~~Ll~ly~f~~~~~~~~l~~~f~~~g~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~w  242 (378)
                      +++|.+|++||||+++ ++++++++||++|..++++|+.++++|++.+..+.....|..|+.++..+++.++|++++++|
T Consensus       251 v~~c~~LvLlyfF~~~-~V~v~iiif~i~g~~gLy~Cl~~lv~r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~aV~W  329 (541)
T KOG2442|consen  251 VTACGFLVLLYFFYSY-LVYVLIIIFCIGGAQGLYNCLAALVHRLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVAVVW  329 (541)
T ss_pred             hhhHHHHHHHHHHHHH-HHHHHhhheeecccchHHHHHHHHHhhhhhhcccccccccccCChhHHHHHHHHhhhheeEEE
Confidence            9999999999999975 999999999999999999999999998865543344456777889999999999999999999


Q ss_pred             hhhhcCccchhHHhHHHHHHHHHHHHhcccCchhHHHHHHHHHHHhhhhheeecccccc--ceeEEEeecCCCCCCCCCC
Q 017077          243 AIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARGDKSGEDGIP  320 (378)
Q Consensus       243 ~~~~~~~~~W~l~ni~g~~~~~~~i~~~~l~~~k~~~~lL~~lf~YDif~Vf~tp~~~~--~svMv~VA~~~~~~~~~~P  320 (378)
                      +++|||+|+|++||++|||+|+++++.+||||+|+|++||.++|+|||||||+||++|+  +|||++||+|.++++|++|
T Consensus       330 ~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~EkiP  409 (541)
T KOG2442|consen  330 AVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEEKIP  409 (541)
T ss_pred             EEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999998  9999999999999999999


Q ss_pred             EEEEccccc-----CCCCcccccccchhhhHHHHHHHHHHhhcccCCCCccch
Q 017077          321 MLLKIPRMF-----DPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPI  368 (378)
Q Consensus       321 ~~l~~P~~~-----~~~~~~s~LGlGDiviPGl~i~~~~rfD~~~~~~~~~~~  368 (378)
                      |++++||++     +++++|||||+|||++||++||||+|||...++.|++++
T Consensus       410 MlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~~~iYf  462 (541)
T KOG2442|consen  410 MLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSVSNIYF  462 (541)
T ss_pred             eEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhccccceeEE
Confidence            999999998     788999999999999999999999999999988666543

>KOG2443 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>smart00730 PSN Presenilin, signal peptide peptidase, family Back     alignment and domain information
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 Back     alignment and domain information
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) Back     alignment and domain information
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like Back     alignment and domain information
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) Back     alignment and domain information
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins Back     alignment and domain information
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like Back     alignment and domain information
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 Back     alignment and domain information
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 Back     alignment and domain information
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like Back     alignment and domain information
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) Back     alignment and domain information
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) Back     alignment and domain information
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like Back     alignment and domain information
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] Back     alignment and domain information
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 Back     alignment and domain information
>cd00538 PA PA: Protease-associated (PA) domain Back     alignment and domain information
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase Back     alignment and domain information
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function Back     alignment and domain information
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 Back     alignment and domain information
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3389 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases Back     alignment and domain information
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) Back     alignment and domain information
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like Back     alignment and domain information
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) Back     alignment and domain information
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 Back     alignment and domain information
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 Back     alignment and domain information
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 Back     alignment and domain information
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 Back     alignment and domain information
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 4e-11
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 Back     alignment and structure
 Score = 60.6 bits (146), Expect = 4e-11
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 7   AGDVIMVDRGN-CKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMM 65
              + ++ RG  C F  K ++A   GAS  +I N      +++         + I A+M+
Sbjct: 104 VSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG--AVDIVAIMI 161

Query: 66  PQDAGASLEKMLLNTSSVSVQLYSPRRPV 94
               G  + + +     V++ +   ++  
Sbjct: 162 GNLKGTKILQSIQRGIQVTMVIEVGKKHG 190
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
4hyg_A301 Putative uncharacterized protein; protease, membra 99.78
3icu_A194 E3 ubiquitin-protein ligase RNF128; E3 ligase, ene 99.69
2ek8_A421 Aminopeptidase; metalloproteinase, hydrolase; 1.80 98.89
3iib_A444 Peptidase M28; YP_926796.1, structural genomics, J 98.77
3fed_A 707 Glutamate carboxypeptidase III; metallopeptidase, 98.62
3kas_A 640 Transferrin receptor protein 1; transferrin recept 98.54
1y9z_A441 Alkaline serine protease; subtilisin-like alpha/be 98.33
3i6s_A649 Subtilisin-like protease; PA-domain, FN3-domain, h 98.13
1xf1_A 926 C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St 98.05
3vta_A621 Cucumisin; subtilisin-like fold, serine protease, 90.19
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A Back     alignment and structure
Probab=99.78  E-value=9.8e-20  Score=172.27  Aligned_cols=117  Identities=27%  Similarity=0.423  Sum_probs=78.4

Q ss_pred             hhhHHHHHhhhhhhhcCccchhHHhHHHHHHHHHHHHhccc--CchhHHHHHHHHHHHhhhhheeeccccccceeEEEee
Q 017077          232 TPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHI--PNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVA  309 (378)
Q Consensus       232 ~~~~~~~~~~w~~~~~~~~~W~l~ni~g~~~~~~~i~~~~l--~~~k~~~~lL~~lf~YDif~Vf~tp~~~~~svMv~VA  309 (378)
                      .+.++++++.++.+.    +|+..|+.|+++|..+...+.+  ..+ .+.+||++|.+||++|||.|      ++|+++|
T Consensus       108 ~~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~T------kHMvtLA  176 (301)
T 4hyg_A          108 LIGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRT------KHMITLA  176 (301)
T ss_dssp             HHHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHH------HHHHHHT
T ss_pred             HHHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCc------hHHHHHH
Confidence            334555555444444    5999999999999998886544  677 89999999999999999965      5899999


Q ss_pred             cCCCCCCCCCCEEEEcccccC-------------CCCcccccccchhhhHHHHHHHHHHhhcccC
Q 017077          310 RGDKSGEDGIPMLLKIPRMFD-------------PWGGYSIIGFGDILLPGLIIAFSLRFKLSDL  361 (378)
Q Consensus       310 ~~~~~~~~~~P~~l~~P~~~~-------------~~~~~s~LGlGDiviPGl~i~~~~rfD~~~~  361 (378)
                      +|.-  +.|+|+++++|+..+             .+++.+++|+||+++|+++++.+.+||....
T Consensus       177 egvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~  239 (301)
T 4hyg_A          177 EGVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPA  239 (301)
T ss_dssp             TTC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             Hhhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHccccc
Confidence            9954  257999999998422             1367889999999999999999999996443
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Back     alignment and structure
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} Back     alignment and structure
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... Back     alignment and structure
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A Back     alignment and structure
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Back     alignment and structure
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Back     alignment and structure
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Back     alignment and structure
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d1de4c2193 Transferrin receptor ectodomain, apical domain {Hu 98.73
d3bi1a2233 Glutamate carboxypeptidase II {Human (Homo sapiens 98.56
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=7.6e-09  Score=91.67  Aligned_cols=75  Identities=20%  Similarity=0.251  Sum_probs=57.0

Q ss_pred             CCCCCcEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccccc------------cccccCC----------------CCCC
Q 017077            4 HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL------------YKMVCDP----------------DETD   55 (378)
Q Consensus         4 ~~l~g~IaLV~RG~CtF~~K~~nAq~aGA~avIV~n~~~~~------------~~m~~~~----------------~~~~   55 (378)
                      .+++|||+|++||+|.|.+|++|||++||+|+|+|+|..+.            ..+...|                .+..
T Consensus        59 ~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~~  138 (193)
T d1de4c2          59 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS  138 (193)
T ss_dssp             SCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCCT
T ss_pred             cccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCccccC
Confidence            47899999999999999999999999999999999874321            0000000                0011


Q ss_pred             CCcceeEEEEehhchHhHHHHhh
Q 017077           56 LDIHIPAVMMPQDAGASLEKMLL   78 (378)
Q Consensus        56 ~~i~IPvv~Is~~~G~~L~~~l~   78 (378)
                      .-.+||+.-|+.+|++.|++.|.
T Consensus       139 ~lP~IP~~PIS~~dA~~lL~~L~  161 (193)
T d1de4c2         139 GLPNIPVQTISRAAAEKLFGNME  161 (193)
T ss_dssp             TSCSSCEEECCHHHHHHHHTTBC
T ss_pred             CCCcCCeeeCCHHHHHHHHHHcC
Confidence            22469999999999999999884
>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure