Query 017078
Match_columns 377
No_of_seqs 150 out of 1389
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:25:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 1.7E-84 3.6E-89 615.1 34.5 372 6-377 4-375 (375)
2 PTZ00281 actin; Provisional 100.0 2.3E-84 4.9E-89 616.0 33.9 376 2-377 1-376 (376)
3 PTZ00466 actin-like protein; P 100.0 2.9E-83 6.2E-88 607.2 35.5 370 6-377 11-380 (380)
4 KOG0676 Actin and related prot 100.0 1.2E-83 2.7E-88 589.0 24.8 369 4-377 4-372 (372)
5 PTZ00004 actin-2; Provisional 100.0 9.1E-82 2E-86 599.0 34.5 376 2-377 1-378 (378)
6 PTZ00280 Actin-related protein 100.0 1.8E-75 3.8E-80 562.7 35.0 370 7-376 4-409 (414)
7 PF00022 Actin: Actin; InterP 100.0 3.6E-76 7.9E-81 566.9 28.1 368 4-377 1-393 (393)
8 KOG0679 Actin-related protein 100.0 1.4E-75 3E-80 520.5 26.6 371 1-376 5-425 (426)
9 smart00268 ACTIN Actin. ACTIN 100.0 1.2E-74 2.6E-79 552.0 33.9 369 8-377 2-373 (373)
10 cd00012 ACTIN Actin; An ubiqui 100.0 4.1E-72 9E-77 534.0 33.5 367 9-375 1-371 (371)
11 KOG0677 Actin-related protein 100.0 1.2E-72 2.5E-77 477.4 20.3 371 5-375 2-386 (389)
12 COG5277 Actin and related prot 100.0 9.7E-69 2.1E-73 509.0 28.3 374 4-377 3-444 (444)
13 KOG0680 Actin-related protein 100.0 8.1E-66 1.8E-70 447.6 24.3 362 6-377 2-399 (400)
14 KOG0681 Actin-related protein 100.0 5.9E-53 1.3E-57 389.6 22.1 364 6-374 22-637 (645)
15 KOG0678 Actin-related protein 100.0 2.6E-51 5.6E-56 357.6 15.2 368 6-374 3-407 (415)
16 KOG0797 Actin-related protein 100.0 4.3E-41 9.4E-46 308.9 19.4 312 66-377 178-615 (618)
17 PRK13930 rod shape-determining 100.0 3.7E-38 8.1E-43 296.6 17.1 307 10-351 11-328 (335)
18 PRK13927 rod shape-determining 100.0 1.2E-36 2.6E-41 286.0 15.8 306 9-351 7-324 (334)
19 TIGR00904 mreB cell shape dete 100.0 1.5E-35 3.3E-40 278.1 17.3 310 10-350 5-326 (333)
20 PRK13929 rod-share determining 100.0 3.8E-35 8.3E-40 274.8 17.9 302 9-348 6-323 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.3E-32 2.9E-37 252.2 16.9 305 8-350 2-320 (326)
22 PRK13928 rod shape-determining 100.0 9.4E-32 2E-36 252.6 17.7 305 10-350 6-322 (336)
23 COG1077 MreB Actin-like ATPase 99.9 1.6E-26 3.5E-31 204.3 14.5 310 7-349 6-329 (342)
24 TIGR02529 EutJ ethanolamine ut 99.9 3.9E-22 8.4E-27 177.5 14.5 208 70-347 28-238 (239)
25 PRK15080 ethanolamine utilizat 99.8 1.1E-19 2.3E-24 164.7 19.0 242 6-349 23-267 (267)
26 CHL00094 dnaK heat shock prote 99.8 5.6E-20 1.2E-24 185.6 14.8 297 8-351 3-376 (621)
27 TIGR01991 HscA Fe-S protein as 99.8 9.8E-20 2.1E-24 182.8 13.5 297 9-351 1-360 (599)
28 PRK00290 dnaK molecular chaper 99.8 1.1E-19 2.5E-24 183.8 13.9 297 8-351 3-374 (627)
29 PTZ00400 DnaK-type molecular c 99.8 2.2E-19 4.7E-24 182.0 15.5 214 102-351 174-415 (663)
30 TIGR02350 prok_dnaK chaperone 99.8 1.3E-19 2.9E-24 182.7 13.1 296 9-351 2-372 (595)
31 PTZ00186 heat shock 70 kDa pre 99.8 3.4E-19 7.3E-24 179.4 15.8 218 102-351 160-401 (657)
32 PRK01433 hscA chaperone protei 99.8 5.5E-19 1.2E-23 176.4 17.0 226 81-351 119-356 (595)
33 PLN03184 chloroplast Hsp70; Pr 99.8 3.1E-19 6.7E-24 180.9 14.2 297 8-351 40-413 (673)
34 PRK13411 molecular chaperone D 99.8 3.7E-19 7.9E-24 180.2 13.4 302 8-351 3-376 (653)
35 PRK13410 molecular chaperone D 99.8 4.9E-19 1.1E-23 179.0 13.8 297 8-351 3-376 (668)
36 PRK05183 hscA chaperone protei 99.8 4.8E-19 1E-23 178.2 13.4 295 8-351 20-376 (616)
37 PTZ00009 heat shock 70 kDa pro 99.8 2.1E-18 4.6E-23 174.8 17.2 215 102-351 140-381 (653)
38 COG0443 DnaK Molecular chapero 99.7 5.8E-16 1.2E-20 154.0 16.3 311 6-351 4-357 (579)
39 PRK11678 putative chaperone; P 99.7 2.4E-16 5.3E-21 152.2 13.2 180 9-192 2-260 (450)
40 PF00012 HSP70: Hsp70 protein; 99.7 2.4E-16 5.3E-21 160.0 10.7 234 82-351 114-376 (602)
41 PRK09472 ftsA cell division pr 99.6 3.8E-14 8.3E-19 136.9 19.9 202 114-351 164-388 (420)
42 TIGR01174 ftsA cell division p 99.6 1.4E-14 3.1E-19 138.1 16.8 181 114-334 156-347 (371)
43 COG0849 ftsA Cell division ATP 99.6 6.5E-14 1.4E-18 132.3 15.2 202 114-351 163-380 (418)
44 KOG0100 Molecular chaperones G 99.5 1.7E-12 3.7E-17 118.1 17.0 220 103-351 173-411 (663)
45 KOG0101 Molecular chaperones H 99.4 5.3E-12 1.1E-16 123.0 15.1 214 103-351 144-383 (620)
46 COG4820 EutJ Ethanolamine util 99.3 1.3E-12 2.8E-17 108.1 4.4 237 5-345 27-268 (277)
47 TIGR01175 pilM type IV pilus a 99.3 1.2E-10 2.6E-15 110.3 18.2 155 114-320 141-307 (348)
48 PRK13917 plasmid segregation p 99.3 2E-10 4.2E-15 108.0 16.5 186 7-198 2-233 (344)
49 PF11104 PilM_2: Type IV pilus 99.2 4.4E-10 9.4E-15 105.9 15.5 194 80-334 86-307 (340)
50 TIGR03739 PRTRC_D PRTRC system 99.2 6.1E-10 1.3E-14 104.0 15.4 183 12-198 2-215 (320)
51 KOG0104 Molecular chaperones G 99.2 1.7E-10 3.7E-15 112.5 10.7 95 102-197 158-275 (902)
52 KOG0103 Molecular chaperones H 99.0 1.2E-08 2.5E-13 99.5 15.1 97 101-198 136-247 (727)
53 COG4972 PilM Tfp pilus assembl 99.0 2.4E-08 5.1E-13 89.6 15.3 147 123-320 155-312 (354)
54 KOG0102 Molecular chaperones m 98.9 3.2E-08 7E-13 93.8 12.4 211 103-349 161-399 (640)
55 PF06406 StbA: StbA protein; 98.6 3.2E-07 6.9E-12 85.6 10.3 70 128-197 137-212 (318)
56 TIGR00241 CoA_E_activ CoA-subs 98.5 7.1E-06 1.5E-10 73.8 15.1 43 298-348 206-248 (248)
57 TIGR03286 methan_mark_15 putat 98.3 2.9E-06 6.3E-11 79.7 8.2 48 295-350 355-402 (404)
58 PRK10719 eutA reactivating fac 98.2 8.6E-06 1.9E-10 77.7 10.1 161 5-190 4-184 (475)
59 TIGR03192 benz_CoA_bzdQ benzoy 98.2 1.4E-05 3E-10 72.4 10.5 48 295-350 239-287 (293)
60 COG1924 Activator of 2-hydroxy 98.1 0.0001 2.3E-09 67.9 15.4 44 299-350 346-389 (396)
61 TIGR02261 benz_CoA_red_D benzo 98.1 2.9E-05 6.2E-10 69.3 10.5 50 297-349 213-262 (262)
62 PF06277 EutA: Ethanolamine ut 97.4 0.0018 3.8E-08 62.1 10.9 173 7-202 3-204 (473)
63 PRK13317 pantothenate kinase; 97.3 0.0067 1.5E-07 55.2 13.8 71 275-350 201-273 (277)
64 TIGR02259 benz_CoA_red_A benzo 96.3 0.0044 9.6E-08 58.2 4.0 52 295-349 381-432 (432)
65 PF01869 BcrAD_BadFG: BadF/Bad 96.2 0.0051 1.1E-07 56.1 4.0 48 299-349 224-271 (271)
66 PF08841 DDR: Diol dehydratase 96.1 0.019 4.1E-07 51.1 6.6 208 115-344 94-324 (332)
67 PRK11031 guanosine pentaphosph 95.7 0.062 1.3E-06 53.4 9.6 83 106-190 81-170 (496)
68 TIGR03706 exo_poly_only exopol 95.6 0.045 9.7E-07 50.7 7.6 83 106-191 75-164 (300)
69 PRK10854 exopolyphosphatase; P 95.0 0.072 1.6E-06 53.2 7.4 83 106-190 86-175 (513)
70 TIGR00744 ROK_glcA_fam ROK fam 94.9 1.4 3.1E-05 40.9 15.5 53 121-175 89-148 (318)
71 TIGR03123 one_C_unchar_1 proba 94.8 0.2 4.3E-06 46.4 9.2 28 147-174 125-152 (318)
72 COG0248 GppA Exopolyphosphatas 94.5 0.067 1.5E-06 52.6 5.7 76 114-191 86-168 (492)
73 TIGR00555 panK_eukar pantothen 94.4 0.41 8.8E-06 43.6 10.1 68 275-347 209-278 (279)
74 PRK09557 fructokinase; Reviewe 94.4 2.3 5.1E-05 39.2 15.6 53 121-175 88-147 (301)
75 PF14450 FtsA: Cell division p 94.2 0.22 4.7E-06 39.3 7.0 58 153-221 2-70 (120)
76 PRK03011 butyrate kinase; Prov 94.1 3 6.6E-05 39.5 15.7 48 296-347 296-343 (358)
77 PF01968 Hydantoinase_A: Hydan 92.8 0.092 2E-06 48.3 3.2 31 143-173 69-100 (290)
78 COG4819 EutA Ethanolamine util 92.2 1 2.2E-05 41.4 8.7 160 4-186 2-179 (473)
79 COG2441 Predicted butyrate kin 91.6 0.22 4.7E-06 44.4 3.8 155 150-351 163-332 (374)
80 PF02541 Ppx-GppA: Ppx/GppA ph 91.2 0.38 8.3E-06 44.1 5.3 82 107-191 62-151 (285)
81 PF07318 DUF1464: Protein of u 90.5 1.2 2.7E-05 41.4 7.8 50 298-351 263-315 (343)
82 PRK13324 pantothenate kinase; 87.4 5.5 0.00012 35.9 9.6 18 9-26 2-19 (258)
83 COG1521 Pantothenate kinase ty 86.3 8.1 0.00018 34.6 9.9 19 9-27 2-20 (251)
84 COG1548 Predicted transcriptio 85.8 0.55 1.2E-05 41.5 2.2 24 149-172 129-152 (330)
85 PF03309 Pan_kinase: Type III 85.3 5.4 0.00012 34.6 8.3 18 10-27 2-19 (206)
86 PRK13321 pantothenate kinase; 85.3 6.4 0.00014 35.4 9.0 18 10-27 3-20 (256)
87 KOG2708 Predicted metalloprote 82.4 2 4.2E-05 37.4 4.1 53 146-200 120-173 (336)
88 PRK13318 pantothenate kinase; 82.2 20 0.00044 32.2 10.9 18 9-26 2-19 (258)
89 TIGR00671 baf pantothenate kin 82.0 10 0.00022 33.8 8.8 18 10-27 2-19 (243)
90 PF08735 DUF1786: Putative pyr 77.0 22 0.00048 31.8 9.1 46 127-173 138-190 (254)
91 PRK13326 pantothenate kinase; 76.2 25 0.00054 31.8 9.5 20 9-28 8-27 (262)
92 COG0145 HyuA N-methylhydantoin 74.9 2.5 5.4E-05 43.5 2.9 31 143-173 269-301 (674)
93 PRK13320 pantothenate kinase; 72.2 38 0.00083 30.2 9.6 18 9-26 4-21 (244)
94 smart00842 FtsA Cell division 62.1 27 0.00058 29.6 6.4 21 72-92 36-56 (187)
95 PRK05082 N-acetylmannosamine k 60.9 56 0.0012 29.8 8.7 53 121-175 88-146 (291)
96 PRK13331 pantothenate kinase; 55.8 12 0.00026 33.5 3.2 27 1-27 1-27 (251)
97 PF03702 UPF0075: Uncharacteri 55.7 5.9 0.00013 37.6 1.2 26 296-321 285-310 (364)
98 PRK13322 pantothenate kinase; 54.9 1.3E+02 0.0028 26.9 9.6 18 9-26 2-19 (246)
99 PF02782 FGGY_C: FGGY family o 51.7 17 0.00038 30.8 3.5 48 295-351 149-196 (198)
100 PRK05082 N-acetylmannosamine k 51.0 22 0.00048 32.4 4.3 66 276-349 221-286 (291)
101 PRK09698 D-allose kinase; Prov 49.1 31 0.00068 31.6 5.0 53 121-175 96-154 (302)
102 PRK00292 glk glucokinase; Prov 47.9 1.4E+02 0.003 27.6 9.1 47 123-170 84-147 (316)
103 PRK13310 N-acetyl-D-glucosamin 46.6 29 0.00062 31.9 4.3 53 121-175 88-147 (303)
104 smart00732 YqgFc Likely ribonu 46.1 22 0.00047 26.3 2.8 19 8-26 2-20 (99)
105 PRK13310 N-acetyl-D-glucosamin 43.5 2.2E+02 0.0048 26.0 9.7 67 276-349 233-300 (303)
106 PTZ00340 O-sialoglycoprotein e 43.1 12 0.00027 35.2 1.3 50 296-350 264-319 (345)
107 PRK13311 N-acetyl-D-glucosamin 41.6 2.5E+02 0.0054 25.0 9.5 53 121-175 88-147 (256)
108 smart00732 YqgFc Likely ribonu 39.6 81 0.0018 23.1 5.1 24 152-175 3-27 (99)
109 TIGR03367 queuosine_QueD queuo 39.5 26 0.00056 26.0 2.3 49 74-129 42-90 (92)
110 COG4012 Uncharacterized protei 39.4 1.5E+02 0.0032 26.8 7.1 39 135-173 208-250 (342)
111 KOG1385 Nucleoside phosphatase 39.1 1.1E+02 0.0024 29.5 6.7 135 9-165 69-228 (453)
112 PRK09585 anmK anhydro-N-acetyl 36.0 24 0.00053 33.5 2.0 23 297-319 288-310 (365)
113 TIGR03192 benz_CoA_bzdQ benzoy 34.8 69 0.0015 29.4 4.7 47 152-200 34-83 (293)
114 TIGR01319 glmL_fam conserved h 34.5 23 0.00051 34.6 1.7 70 104-173 176-272 (463)
115 COG0533 QRI7 Metal-dependent p 33.2 26 0.00056 32.8 1.7 56 291-351 257-318 (342)
116 KOG1386 Nucleoside phosphatase 32.8 3.7E+02 0.008 26.7 9.3 151 10-183 12-198 (501)
117 PRK15027 xylulokinase; Provisi 31.6 34 0.00074 33.9 2.4 48 296-351 387-434 (484)
118 PF03727 Hexokinase_2: Hexokin 31.5 46 0.001 29.6 3.0 50 299-351 189-240 (243)
119 PF13941 MutL: MutL protein 31.2 31 0.00066 33.9 1.9 75 102-176 178-274 (457)
120 PF13941 MutL: MutL protein 28.9 35 0.00075 33.5 1.9 23 9-31 2-26 (457)
121 TIGR01312 XylB D-xylulose kina 28.9 61 0.0013 32.0 3.7 47 296-351 391-437 (481)
122 TIGR03286 methan_mark_15 putat 28.5 1E+02 0.0022 29.8 4.8 50 151-200 145-194 (404)
123 PLN02666 5-oxoprolinase 27.6 57 0.0012 36.5 3.4 21 150-171 314-334 (1275)
124 PRK00976 hypothetical protein; 27.5 81 0.0018 29.5 3.9 29 145-174 144-172 (326)
125 PRK00976 hypothetical protein; 26.7 85 0.0018 29.3 3.9 44 297-350 265-310 (326)
126 KOG2707 Predicted metalloprote 26.5 57 0.0012 30.6 2.6 74 276-351 288-362 (405)
127 cd08627 PI-PLCc_gamma1 Catalyt 25.9 94 0.002 27.4 3.8 44 82-131 74-117 (229)
128 PF00370 FGGY_N: FGGY family o 25.1 53 0.0012 29.0 2.3 19 9-27 2-20 (245)
129 PRK13321 pantothenate kinase; 24.2 2.3E+02 0.0049 25.4 6.2 47 153-199 3-51 (256)
130 cd08630 PI-PLCc_delta3 Catalyt 23.8 1E+02 0.0023 27.7 3.8 44 82-131 74-117 (258)
131 cd08626 PI-PLCc_beta4 Catalyti 23.7 1E+02 0.0023 27.7 3.7 45 82-132 76-120 (257)
132 KOG1794 N-Acetylglucosamine ki 23.5 4.2E+02 0.0091 24.5 7.4 91 82-173 47-143 (336)
133 PF01968 Hydantoinase_A: Hydan 23.3 46 0.001 30.5 1.5 27 5-31 75-101 (290)
134 cd08592 PI-PLCc_gamma Catalyti 23.3 1.1E+02 0.0023 27.1 3.7 44 82-131 74-117 (229)
135 PRK00047 glpK glycerol kinase; 23.2 72 0.0016 31.7 3.0 47 296-351 404-450 (498)
136 cd08596 PI-PLCc_epsilon Cataly 23.2 1.1E+02 0.0023 27.5 3.7 44 82-131 74-117 (254)
137 cd08595 PI-PLCc_zeta Catalytic 22.9 1.1E+02 0.0023 27.6 3.7 44 82-131 74-117 (257)
138 COG1149 MinD superfamily P-loo 22.8 87 0.0019 28.4 3.0 38 102-140 187-224 (284)
139 cd08632 PI-PLCc_eta1 Catalytic 22.8 1.1E+02 0.0025 27.3 3.8 45 82-132 74-118 (253)
140 cd08594 PI-PLCc_eta Catalytic 22.8 1.1E+02 0.0025 26.9 3.7 44 82-131 74-117 (227)
141 cd08631 PI-PLCc_delta4 Catalyt 22.6 1.1E+02 0.0024 27.6 3.6 44 82-131 74-117 (258)
142 PTZ00294 glycerol kinase-like 22.6 1.1E+02 0.0023 30.6 4.1 47 296-351 407-453 (504)
143 cd08598 PI-PLC1c_yeast Catalyt 22.5 1.1E+02 0.0024 27.0 3.6 44 82-131 74-117 (231)
144 cd08629 PI-PLCc_delta1 Catalyt 22.2 1.1E+02 0.0025 27.4 3.7 44 82-131 74-117 (258)
145 TIGR00329 gcp_kae1 metallohydr 22.0 74 0.0016 29.4 2.6 26 296-321 259-284 (305)
146 TIGR01311 glycerol_kin glycero 22.0 76 0.0016 31.5 2.9 47 296-351 400-446 (493)
147 cd08591 PI-PLCc_beta Catalytic 22.0 1.2E+02 0.0025 27.4 3.7 45 82-132 76-120 (257)
148 KOG2960 Protein involved in th 22.0 69 0.0015 27.9 2.2 57 290-351 70-127 (328)
149 cd08593 PI-PLCc_delta Catalyti 21.9 1.1E+02 0.0025 27.5 3.6 44 82-131 74-117 (257)
150 PRK13318 pantothenate kinase; 21.3 2.9E+02 0.0063 24.7 6.3 47 153-199 3-51 (258)
151 PRK04123 ribulokinase; Provisi 20.9 1.4E+02 0.003 30.2 4.5 47 296-351 439-486 (548)
152 cd08633 PI-PLCc_eta2 Catalytic 20.6 1.3E+02 0.0029 27.0 3.7 44 82-131 74-117 (254)
153 TIGR01234 L-ribulokinase L-rib 20.5 90 0.002 31.4 3.1 47 296-351 436-483 (536)
154 PRK10331 L-fuculokinase; Provi 20.0 1.2E+02 0.0027 29.8 3.9 47 296-351 390-436 (470)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.7e-84 Score=615.14 Aligned_cols=372 Identities=56% Similarity=1.021 Sum_probs=348.1
Q ss_pred CCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCHHHHH
Q 017078 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~~ 85 (377)
..++||||+||+++|+||+|++.|++++||++++++......+...++.++|+++...++.+.+++|+++|.|.|||+++
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e 83 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIE 83 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHH
Confidence 35689999999999999999999999999999998765322222355778999998888888999999999999999999
Q ss_pred HHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCCCceEEE
Q 017078 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 165 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~ 165 (377)
.+|+|+|.+.|.++++++|+++++|+++++..|+++++++||.|++|++++.+++++++|++|+++|+|||+|++.|+|+
T Consensus 84 ~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~ 163 (375)
T PTZ00452 84 IIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCV 163 (375)
T ss_pred HHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEE
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcC
Q 017078 166 PIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELP 245 (377)
Q Consensus 166 pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp 245 (377)
||+||+++.+++.++++||++++++|.++|.++++.+....+.+.++++|+++||++.+++++...........+.|++|
T Consensus 164 PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP 243 (375)
T PTZ00452 164 PVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP 243 (375)
T ss_pred EEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC
Confidence 99999999999999999999999999999999998887777788999999999999999887776544434456789999
Q ss_pred CCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCC
Q 017078 246 DGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPS 325 (377)
Q Consensus 246 d~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~ 325 (377)
||+.+.++.+|+.++|+||+|++++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||++++|.
T Consensus 244 Dg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~ 323 (375)
T PTZ00452 244 DGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPS 323 (375)
T ss_pred CCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEECCCCCccceehhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017078 326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 326 ~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
..++++..+++|.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 324 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 324 QLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred CceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 8899999999999999999999999999999999999999999999999997
No 2
>PTZ00281 actin; Provisional
Probab=100.00 E-value=2.3e-84 Score=615.98 Aligned_cols=376 Identities=90% Similarity=1.414 Sum_probs=353.5
Q ss_pred CCCCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCH
Q 017078 2 ADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW 81 (377)
Q Consensus 2 ~~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~ 81 (377)
|++|+.++||||+||+++|+||+||+.|+.++||+++++++...+.+.+..+.++|+++...+....+++|+++|.+.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dw 80 (376)
T PTZ00281 1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80 (376)
T ss_pred CCCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCH
Confidence 57889999999999999999999999999999999999887654444445678899998877777889999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCCCc
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
++++.+|+|+|.+.|.++++++|+++++|+++++..|+++++++||.|+++++++.+++++++|++|++||+|||+|++.
T Consensus 81 d~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (376)
T PTZ00281 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGV 160 (376)
T ss_pred HHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCce
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccce
Q 017078 162 SHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKS 241 (377)
Q Consensus 162 t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
|+|+||+||+++.+++.++++||++++++|+++|.++++.+....+.+.++++|+++|||+.+++.+.+....+....+.
T Consensus 161 t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (376)
T PTZ00281 161 SHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKS 240 (376)
T ss_pred EEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence 99999999999999999999999999999999999998888777778899999999999999887777655444556778
Q ss_pred EEcCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHh
Q 017078 242 YELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISA 321 (377)
Q Consensus 242 ~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~ 321 (377)
|.+|||+.+.++.+|+.++|+||+|+..+.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.
T Consensus 241 y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~ 320 (376)
T PTZ00281 241 YELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTA 320 (376)
T ss_pred EECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceEEEECCCCCccceehhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017078 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
++|...++++..+++|.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 321 ~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 321 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred hCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 99988899999999999999999999999999999999999999999999999997
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=2.9e-83 Score=607.15 Aligned_cols=370 Identities=52% Similarity=0.970 Sum_probs=346.4
Q ss_pred CCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCHHHHH
Q 017078 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~~ 85 (377)
+.++||||+||+++|+||+|++.|++++||++++++....+.+...++.++|+++...++...+++|+++|.+.||+.+|
T Consensus 11 ~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e 90 (380)
T PTZ00466 11 SNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDME 90 (380)
T ss_pred cCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHH
Confidence 45789999999999999999999999999999999876544444456789999988777778899999999999999999
Q ss_pred HHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCCCceEEE
Q 017078 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 165 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~ 165 (377)
.+|+|+| +.|+++++++|+++++++++++..|+++++++||.|+++++++.++++|++|++|+++|+|||+|++.|+|+
T Consensus 91 ~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~ 169 (380)
T PTZ00466 91 NIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCV 169 (380)
T ss_pred HHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEE
Confidence 9999998 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcC
Q 017078 166 PIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELP 245 (377)
Q Consensus 166 pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp 245 (377)
||+||+++.+++.++++||++++++|+++|.+++..+....+.+.++++|+++||++.|+..+..... .....+.|++|
T Consensus 170 PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~-~~~~~~~y~LP 248 (380)
T PTZ00466 170 SIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYILP 248 (380)
T ss_pred EEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhcc-ccccceeEECC
Confidence 99999999999999999999999999999998888777777888999999999999999877665432 22345789999
Q ss_pred CCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCC
Q 017078 246 DGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPS 325 (377)
Q Consensus 246 d~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~ 325 (377)
||..+.++.+|+++||+||+|++++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.+.|.
T Consensus 249 dg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~ 328 (380)
T PTZ00466 249 DGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPK 328 (380)
T ss_pred CCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEECCCCCccceehhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017078 326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 326 ~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
..++++..+++|++++|+|||++|++.+|+++||||+||+|+|+++++||||
T Consensus 329 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 329 DITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 8899999999999999999999999999999999999999999999999997
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.2e-83 Score=589.02 Aligned_cols=369 Identities=81% Similarity=1.311 Sum_probs=351.2
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCHHH
Q 017078 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~ 83 (377)
..+.++||||+||..+|+||+||+.|+.++||.++++++...+.+..+++.++|+++...+ .+++|++||.+.||++
T Consensus 4 ~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~ 80 (372)
T KOG0676|consen 4 ADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDD 80 (372)
T ss_pred cCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchHH
Confidence 4566999999999999999999999999999999999999998888899999999998877 6799999999999999
Q ss_pred HHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCCCceE
Q 017078 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 163 (377)
++.+|.|+|++.|.+.|+++|+++++|+++|+..||++++++||.|++|++++...+++ |++|+++|+|||+|++.|+
T Consensus 81 me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~ 158 (372)
T KOG0676|consen 81 MEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTH 158 (372)
T ss_pred HHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999554434 9999999999999999999
Q ss_pred EEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccceEE
Q 017078 164 TVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYE 243 (377)
Q Consensus 164 i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
++||++|+++++++..+++||++++++++..|.++|+.+....+.++++++|+++||++.|+++++............|+
T Consensus 159 ~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~ 238 (372)
T KOG0676|consen 159 VVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYE 238 (372)
T ss_pred eeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccccccc
Confidence 99999999999999999999999999999999999999988889999999999999999999988887444555667799
Q ss_pred cCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhC
Q 017078 244 LPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA 323 (377)
Q Consensus 244 lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~ 323 (377)
+|||+.+.++.+|+.++|+||+|+.++.+..+|++++.++|.+|++|.|+.|+.||||+||++.+|||.+||++||+.+.
T Consensus 239 lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~ 318 (372)
T KOG0676|consen 239 LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALA 318 (372)
T ss_pred CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEECCCCCccceehhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017078 324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
|...++++..+|++.+++|+||||+|++..|+++||||+||+|+|+.+++||||
T Consensus 319 P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 319 PSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred CCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 998999999999999999999999999999999999999999999999999998
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=9.1e-82 Score=599.01 Aligned_cols=376 Identities=80% Similarity=1.292 Sum_probs=350.5
Q ss_pred CCCCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCH
Q 017078 2 ADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW 81 (377)
Q Consensus 2 ~~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~ 81 (377)
|+-++.++||||+||.++|+||+|++.|+.++||+++++++...+.+...+..++|+++...++...+++|+++|.+.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~ 80 (378)
T PTZ00004 1 MSVEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNW 80 (378)
T ss_pred CCCCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCH
Confidence 45678889999999999999999999999999999999887655444445678899998777777889999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCCCc
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
++++.+|+|+|.+.|++++.++|+++++|+++++..|+++++++||.++++++++.+++++++|++|+++|+|||+|++.
T Consensus 81 d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (378)
T PTZ00004 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (378)
T ss_pred HHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCc
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCC-ccc
Q 017078 162 SHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSA-VEK 240 (377)
Q Consensus 162 t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~-~~~ 240 (377)
|+|+||+||+++.+++.++++||++++++|.++|.+++..+....+.+.++++|+++|+++.+++++......... ..+
T Consensus 161 t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (378)
T PTZ00004 161 SHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEE 240 (378)
T ss_pred EEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccce
Confidence 9999999999999999999999999999999999998888777777889999999999999998877654432222 367
Q ss_pred eEEcCCCcEEeeCCcccccccccCCCccCCCc-CCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHH
Q 017078 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 241 ~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL 319 (377)
.|.+|||+.+.++.+|+++||+||+|++++.+ ..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||
T Consensus 241 ~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL 320 (378)
T PTZ00004 241 SYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKEL 320 (378)
T ss_pred EEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHH
Confidence 89999999999999999999999999988877 89999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCceEEEECCCCCccceehhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017078 320 SALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 320 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
++++|...++++..+++|.+++|+|||++|++.+|+++||||+||+|+|++++.||||
T Consensus 321 ~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 321 TTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred HHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 9999988889999999999999999999999999999999999999999999999997
No 6
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.8e-75 Score=562.73 Aligned_cols=370 Identities=41% Similarity=0.745 Sum_probs=332.8
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCcc---ccCCCcceeeccccccccCcceeeccccCCccCCHHH
Q 017078 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM---VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~---~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~ 83 (377)
.++||||+||+++|+||+|++.|++++||++++++..... .+....+.++|+++........+++|+++|.|.|||+
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~ 83 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL 83 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence 5689999999999999999999999999999998663211 1112346789999988877889999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhcc----------CCceEE
Q 017078 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAS----------GRTTGI 153 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~~~l 153 (377)
++.+|+|+|.+.|++++.++|+++++|++++...|+++++++||.++++++++.+++++++|++ |.++||
T Consensus 84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl 163 (414)
T PTZ00280 84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT 163 (414)
T ss_pred HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence 9999999988899999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEeCCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhcc
Q 017078 154 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSK 233 (377)
Q Consensus 154 VVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~ 233 (377)
|||+|++.|+|+||++|+++.+++.++++||++++++|.++|.+++..+....+.+.++++|+++||+..++.++.....
T Consensus 164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~ 243 (414)
T PTZ00280 164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYD 243 (414)
T ss_pred EEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998888777666678899999999999999887776543
Q ss_pred CC-CCccceEEcCCC---c--EEeeCCcccccccccCCCccCCCc-CCCHHHHHHHHHhcCChhHHHHhhcCceeccCCC
Q 017078 234 TS-SAVEKSYELPDG---Q--VITIGAERFRCPEVLFQPSMIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST 306 (377)
Q Consensus 234 ~~-~~~~~~~~lpd~---~--~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s 306 (377)
.. ......|.+||. . .+.++.+|+++||+||+|++++.. ..+|+++|.++|++||+|.|+.|++||+|+||+|
T Consensus 244 ~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s 323 (414)
T PTZ00280 244 SDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGST 323 (414)
T ss_pred cCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcc
Confidence 21 223457888873 3 789999999999999999887544 4599999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhhCC----------------CCceEEEECCCCCccceehhhHHhhcccccccccccHHHHhhcCCc
Q 017078 307 MFPGIADRMSKEISALAP----------------SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPS 370 (377)
Q Consensus 307 ~i~g~~~rl~~eL~~~~~----------------~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~ 370 (377)
++|||.+||++||+++++ ...+++|..++++.+++|+|||++|++++|+++||||+||+|+|++
T Consensus 324 ~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~ 403 (414)
T PTZ00280 324 MFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPS 403 (414)
T ss_pred cCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChH
Confidence 999999999999999863 3567889999999999999999999999999999999999999999
Q ss_pred cccccc
Q 017078 371 IVHRKC 376 (377)
Q Consensus 371 ~~~~k~ 376 (377)
+++++.
T Consensus 404 i~~~~~ 409 (414)
T PTZ00280 404 ICRYNN 409 (414)
T ss_pred heeecc
Confidence 998873
No 7
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=3.6e-76 Score=566.88 Aligned_cols=368 Identities=52% Similarity=0.982 Sum_probs=323.6
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCHHH
Q 017078 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~ 83 (377)
+|+.++||||+||.+||+||+||+.|+.++|++++++.+... ..+.++|++.........+++|+++|.+.||+.
T Consensus 1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 75 (393)
T PF00022_consen 1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDA 75 (393)
T ss_dssp -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHH
T ss_pred CCCCCEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccc
Confidence 589999999999999999999999999999999999876542 226788988666667778999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCCCceE
Q 017078 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 163 (377)
++.+|+++|.+.|..+++++++++++|+++++..|+.+++++||.+++++++++++++||+|++|.++|||||+|++.|+
T Consensus 76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~ 155 (393)
T PF00022_consen 76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTS 155 (393)
T ss_dssp HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EE
T ss_pred cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeee
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCC-----------------ccchhHHHHHHHHhHhccccccCHH
Q 017078 164 TVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYS-----------------FTTTAEREIVRDMKEKLAYIALDYE 226 (377)
Q Consensus 164 i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~-----------------~~~~~~~~~~~~ik~~~~~v~~~~~ 226 (377)
|+||+||+++.+++.++++||++++++|+++|.+++.. +....+...++++|+++|+++.+..
T Consensus 156 v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 235 (393)
T PF00022_consen 156 VVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPD 235 (393)
T ss_dssp EEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHH
T ss_pred eeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccc
Confidence 99999999999999999999999999999999987433 2233567889999999999998877
Q ss_pred HHHhhccCCCCccceEEcCCCcEEeeCCcccccccccCCCccCCCcCC-------CHHHHHHHHHhcCChhHHHHhhcCc
Q 017078 227 QELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAA-------GIHETTYNSIMKCDVDIRKDLYGNI 299 (377)
Q Consensus 227 ~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~-------~l~~~I~~~i~~~~~~~~~~l~~nI 299 (377)
..... .........|.+|||+.+.++.+|+.++|+||+|+..+.+.. +|+++|.++|++||.|.|+.|++||
T Consensus 236 ~~~~~-~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nI 314 (393)
T PF00022_consen 236 EEQEE-QASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNI 314 (393)
T ss_dssp HHHHH-HHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTE
T ss_pred ccccc-ccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccce
Confidence 51111 112445778999999999999999999999999998887665 9999999999999999999999999
Q ss_pred eeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCC-CCccceehhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017078 300 VLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 300 vl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~-~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
+||||+|++|||.+||++||..+.+...++++..++ +|.+++|+|||++|++.+|+++||||+||+|+|+++++||||
T Consensus 315 vl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 315 VLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp EEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred EEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 999999999999999999999999888899999998 999999999999999999999999999999999999999998
No 8
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=1.4e-75 Score=520.49 Aligned_cols=371 Identities=40% Similarity=0.757 Sum_probs=322.5
Q ss_pred CCCCCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeecccccc-ccCcceeeccccCCccC
Q 017078 1 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVS 79 (377)
Q Consensus 1 ~~~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~-~~~~~~~~~p~~~g~i~ 79 (377)
|.++|+..+||||+||+++|+||+|++.|++++||.++.....+.-. .+.+.++++.++.. ++....++.|+++|.+.
T Consensus 5 ~yggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~-~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~ 83 (426)
T KOG0679|consen 5 VYGGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDA-EDKKGYYVDENAIHVPRPGMEVKTPIKNGLVE 83 (426)
T ss_pred cccccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCcc-ccccceEeechhccCCCCCCeeccchhcCCcc
Confidence 45789999999999999999999999999999999998642221111 12334688888755 46777899999999999
Q ss_pred CHHHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCC
Q 017078 80 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGD 159 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~ 159 (377)
|||.++.+|+|.|.++|+.+|.++|+++++|+.+++..|++++|.+||++++|+++++..++|++|+.|+.|+||||||+
T Consensus 84 dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa 163 (426)
T KOG0679|consen 84 DWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGA 163 (426)
T ss_pred cHHHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecC
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchh---------------------------------
Q 017078 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTA--------------------------------- 206 (377)
Q Consensus 160 ~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~--------------------------------- 206 (377)
++|+|+||+||+++.+.+...++||++|+..++++|...++++....
T Consensus 164 ~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~ 243 (426)
T KOG0679|consen 164 THTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYM 243 (426)
T ss_pred CCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877543210
Q ss_pred HHHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcCCCcEEeeCCcccccccccCCCccCC------------CcCC
Q 017078 207 EREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIG------------MEAA 274 (377)
Q Consensus 207 ~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~------------~~~~ 274 (377)
....++++|++++.++..+-++. ...+-.++.|++|||....++.+||++||.||.|+... ....
T Consensus 244 ~~~v~~e~ke~v~qv~dtp~de~---~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~l 320 (426)
T KOG0679|consen 244 EQRVYQEFKESVLQVSDTPFDEE---VAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTML 320 (426)
T ss_pred HHHHHHHHHHHHHhccCCCCccc---ccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCcccc
Confidence 01235556666665543221111 11224678999999999999999999999999998742 2356
Q ss_pred CHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCC---CCccceehhhHHhhcc
Q 017078 275 GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASL 351 (377)
Q Consensus 275 ~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l 351 (377)
|+++++..+|..||+|+|..|+.|||+|||+|.|+||.+||++||+.+.|.+ ++++++.. +|.+++|+||||+|+|
T Consensus 321 G~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASL 399 (426)
T KOG0679|consen 321 GLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASL 399 (426)
T ss_pred CchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhcc
Confidence 9999999999999999999999999999999999999999999999999987 99998764 7999999999999999
Q ss_pred cccccccccHHHHhhcCC-ccccccc
Q 017078 352 STFQQMWIAKAEYDESGP-SIVHRKC 376 (377)
Q Consensus 352 ~~~~~~~itr~~y~e~G~-~~~~~k~ 376 (377)
++|+++||||+||+|.|. +.+.|||
T Consensus 400 gtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 400 GTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred ccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 999999999999999999 8899998
No 9
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.2e-74 Score=552.02 Aligned_cols=369 Identities=68% Similarity=1.181 Sum_probs=340.0
Q ss_pred CcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCHHHHHHH
Q 017078 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI 87 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~ 87 (377)
++||||+||++||+||++++.|++++||+++++++.....+ ....+++|+++...++...+++|+++|.+.||+.++.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence 58999999999999999999999999999999876532111 23467899998776666689999999999999999999
Q ss_pred HHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCCCceEEEEe
Q 017078 88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (377)
Q Consensus 88 ~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 167 (377)
|+++|.+.|+++++++|+++++|..++...|+.+++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 160 (373)
T smart00268 81 WDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPV 160 (373)
T ss_pred HHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEE
Confidence 99999778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccC---CCCccceEEc
Q 017078 168 YEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKT---SSAVEKSYEL 244 (377)
Q Consensus 168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~~l 244 (377)
+||.++.++...+++||++++++|.++|++++..+....+.+.++++|+++|+++.+++++++.... .......|.+
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (373)
T smart00268 161 VDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL 240 (373)
T ss_pred ECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC
Confidence 9999999999999999999999999999886666655667789999999999999988777664432 2445678999
Q ss_pred CCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCC
Q 017078 245 PDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAP 324 (377)
Q Consensus 245 pd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~ 324 (377)
|||..+.++.+|+.++|.||+|+..+.+..+|+++|.++|.+||.+.|+.|++||+||||+|++|||.+||++||+.+.|
T Consensus 241 pdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p 320 (373)
T smart00268 241 PDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAP 320 (373)
T ss_pred CCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEECCCCCccceehhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017078 325 SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 325 ~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
...++++..+++|.+++|.|||++|+++.|+++||||+||+|+|+++++||||
T Consensus 321 ~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 321 KKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred CCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 88889999999999999999999999999999999999999999999999998
No 10
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=4.1e-72 Score=533.99 Aligned_cols=367 Identities=70% Similarity=1.201 Sum_probs=335.8
Q ss_pred cEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCc-ceeeccccCCccCCHHHHHHH
Q 017078 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKI 87 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~~~~~~~~~ 87 (377)
+||||+||+++|+||++++.|++++||+++++++.....+.+....++|+++...... ..+++|+++|.+.||++++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 6899999999999999999999999999999876543333345678999998776543 789999999999999999999
Q ss_pred HHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCCCceEEEEe
Q 017078 88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (377)
Q Consensus 88 ~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 167 (377)
|+++|.+.|..+++++++++++|+.++...|+.+++++||.++++++++++++++|+|++|.++|||||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhh-ccCCCCccceEEcCC
Q 017078 168 YEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET-SKTSSAVEKSYELPD 246 (377)
Q Consensus 168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~-~~~~~~~~~~~~lpd 246 (377)
+||+++.++...+++||+++++++.++|++++..+....+...++++|+++|+++.++.++... ..........|.+||
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd 240 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD 240 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC
Confidence 9999999999999999999999999999988876666667889999999999999888766522 122344567899999
Q ss_pred CcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCC-
Q 017078 247 GQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPS- 325 (377)
Q Consensus 247 ~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~- 325 (377)
++.+.++.+|+.++|+||+|+..+....+|+++|.++|+.||.+.|+.+++||+||||+|++|||.+||++||..+.|.
T Consensus 241 ~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~ 320 (371)
T cd00012 241 GRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS 320 (371)
T ss_pred CeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc
Confidence 9999999999999999999998888889999999999999999999999999999999999999999999999999987
Q ss_pred -CceEEEECCCCCccceehhhHHhhcccccccccccHHHHhhcCCcccccc
Q 017078 326 -SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRK 375 (377)
Q Consensus 326 -~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k 375 (377)
...+++..+++|.+++|+|||++|++..|+++||||+||+|+|+++++||
T Consensus 321 ~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 321 KDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred cceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 56678888889999999999999999999999999999999999999987
No 11
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=1.2e-72 Score=477.44 Aligned_cols=371 Identities=49% Similarity=0.909 Sum_probs=345.2
Q ss_pred CCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCc--cccCCCcceeeccccccccCcceeeccccCCccCCHH
Q 017078 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~--~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~ 82 (377)
++.++||.|.|+.+.|+||+|++.|.++||+.+++|--... .-...-++..||+++.+.++.+++.||+++|.+.+|+
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwd 81 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWD 81 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChH
Confidence 56899999999999999999999999999999999853221 1122347889999999889999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCCCce
Q 017078 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t 162 (377)
+++++|+|.|.++|+++|.+.++++++||++|...|+++++..||+++|..|++.-++++++|+.|..+|+|||.|.+.|
T Consensus 82 dM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT 161 (389)
T KOG0677|consen 82 DMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 161 (389)
T ss_pred HHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccceE
Q 017078 163 HTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSY 242 (377)
Q Consensus 163 ~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
.|+||++|+.++|-..+++++|++++++|.++|..+|+.+..+++.+.++++|+++||++.|.+.+.+....+.....+|
T Consensus 162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999888777777777788999
Q ss_pred EcCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhh
Q 017078 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISAL 322 (377)
Q Consensus 243 ~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~ 322 (377)
.+|||..|.++.+||.+||.||+|.++..+.+++.+++..+|+..++|.|..++++|||+||++..||+.+||.+||+++
T Consensus 242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql 321 (389)
T KOG0677|consen 242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL 321 (389)
T ss_pred ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC-----------CCceEEEECCCCCccceehhhHHhhcc-cccccccccHHHHhhcCCcccccc
Q 017078 323 AP-----------SSMKIKVVAPPERKYSVWIGGSILASL-STFQQMWIAKAEYDESGPSIVHRK 375 (377)
Q Consensus 323 ~~-----------~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~~~~itr~~y~e~G~~~~~~k 375 (377)
.- ...++++-.||-+..-+|+||+++|.+ +.-+++|+||+||.|.|.+.+.+.
T Consensus 322 yl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 322 YLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 42 124688889999999999999999986 566799999999999999988764
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=9.7e-69 Score=508.96 Aligned_cols=374 Identities=55% Similarity=1.004 Sum_probs=339.6
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeC-CCCccccCCCcceeeccccccccC--cceeeccccCCccCC
Q 017078 4 GEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVSN 80 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~-~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~p~~~g~i~~ 80 (377)
+++.++||||+||+++|+||+|++.|+.++|+++++.+ +...+.....++.++|+++....+ ...+++|+++|.+.|
T Consensus 3 ~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~ 82 (444)
T COG5277 3 GDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILN 82 (444)
T ss_pred CCCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCC
Confidence 44555599999999999999999999999999999986 444455556788899999987765 678999999999999
Q ss_pred HHHHHHHHHHHhcc--ccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCc--eEEEEe
Q 017078 81 WDDMEKIWHHTFYN--ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRT--TGIVLD 156 (377)
Q Consensus 81 ~~~~~~~~~~~~~~--~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--~~lVVD 156 (377)
|++++++|+|+|.+ .+...+.++|+++++|++++...|+.+++++||.++++++++.+++++++|+.|.. +|||||
T Consensus 83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD 162 (444)
T COG5277 83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVID 162 (444)
T ss_pred cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEE
Confidence 99999999999988 68888999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHh-----cCCCccch---hHHHHHHHHhHhcc-------cc
Q 017078 157 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTE-----RGYSFTTT---AEREIVRDMKEKLA-------YI 221 (377)
Q Consensus 157 iG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~---~~~~~~~~ik~~~~-------~v 221 (377)
+|++.|+|+||+||.++.++++++++||++++.+|.++|.. +++.+... .+.+.++.+|++.| |+
T Consensus 163 ~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~ 242 (444)
T COG5277 163 SGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYV 242 (444)
T ss_pred cCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccch
Confidence 99999999999999999999999999999999999999998 66766665 56889999999999 88
Q ss_pred ccCHHHHHhhccC----------------CCCccceEEcCCCcEEeeCCc-ccccccccCCCc--cCCCcCCC-------
Q 017078 222 ALDYEQELETSKT----------------SSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPS--MIGMEAAG------- 275 (377)
Q Consensus 222 ~~~~~~~~~~~~~----------------~~~~~~~~~lpd~~~i~i~~~-~~~~~E~lf~p~--~~~~~~~~------- 275 (377)
..+.++..+.... .......+.+|+++.+.+..+ ||++||.+|.|. ..+.+..+
T Consensus 243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~ 322 (444)
T COG5277 243 SLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQ 322 (444)
T ss_pred hhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhh
Confidence 7766555443322 234567889999999999988 999999999999 65544444
Q ss_pred --------------------HHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCC
Q 017078 276 --------------------IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP 335 (377)
Q Consensus 276 --------------------l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~ 335 (377)
|.+++.++|+.||.+.|+.|++|||||||+|++|||.+||++||+.+.|..+.+.+..++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~ 402 (444)
T COG5277 323 ELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPP 402 (444)
T ss_pred hhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCC
Confidence 999999999999999999999999999999999999999999999999998999999999
Q ss_pred CCccceehhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017078 336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 336 ~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
+|.+.+|+|||++|++..|.++||||+||+|+|+.++++|+|
T Consensus 403 ~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 403 DPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred chhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999999999999999999999987
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=8.1e-66 Score=447.60 Aligned_cols=362 Identities=30% Similarity=0.571 Sum_probs=327.0
Q ss_pred CCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeecccccccc--CcceeeccccCCccCCHHH
Q 017078 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR--GILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~p~~~g~i~~~~~ 83 (377)
+..|||+|+|++++|+|+++.+.|. ++|||+.+.++. .++.++|++..+.+ +.+.+++|+++|.+.+|+.
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~-------~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~t 73 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFG-------RRRSFLANEIDECKDISSLFYRRPHERGYLVNWDT 73 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCce-eccchhhhcccc-------cchhhhhhhhhhccCccceEEeehhhcceeEeehh
Confidence 5789999999999999999999998 779999887764 44578898877764 3456789999999999999
Q ss_pred HHHHHHHHhccc-cCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhcc---C--------Cce
Q 017078 84 MEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYAS---G--------RTT 151 (377)
Q Consensus 84 ~~~~~~~~~~~~-L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~---g--------~~~ 151 (377)
..++|+++|.+. ..++.+++.+++++|.++-.+..+...+++||+++|.++.-.+.+.++++-. + ...
T Consensus 74 q~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c 153 (400)
T KOG0680|consen 74 QSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSEC 153 (400)
T ss_pred HHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccce
Confidence 999999999653 4566789999999999999999999999999999999999999988888751 1 237
Q ss_pred EEEEeCCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhh
Q 017078 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET 231 (377)
Q Consensus 152 ~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~ 231 (377)
++|||.|++.|.|+|+++|.+..++++++++||+.+|++|++.+..++++... +...++++|+..|||++|+.+.++.
T Consensus 154 ~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVSqnF~~~m~~ 231 (400)
T KOG0680|consen 154 CLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD--ETYVVNEIKEDVCFVSQNFKEDMDI 231 (400)
T ss_pred EEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc--hhhhhhhhhhheEEechhhHHHHHH
Confidence 99999999999999999999999999999999999999999999998887754 6788999999999999999988876
Q ss_pred ccCC---CCccceEEcCC-------------------CcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCCh
Q 017078 232 SKTS---SAVEKSYELPD-------------------GQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDV 289 (377)
Q Consensus 232 ~~~~---~~~~~~~~lpd-------------------~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~ 289 (377)
.... +.....|.+|| .+.+.+..|||.+||+||+|++++.+.+|++|+|.++|..||.
T Consensus 232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe 311 (400)
T KOG0680|consen 232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE 311 (400)
T ss_pred HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence 5443 23456777776 3678889999999999999999999999999999999999999
Q ss_pred hHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcccccccccccHHHHhhcCC
Q 017078 290 DIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369 (377)
Q Consensus 290 ~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~ 369 (377)
++|+.|+.|||++||.+++|||.+||..||++++|.++.++|..|.+|..-+|-||+.++..++|+..||||+||+|+|+
T Consensus 312 ~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~ 391 (400)
T KOG0680|consen 312 EVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGP 391 (400)
T ss_pred HHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 017078 370 SIVHRKCF 377 (377)
Q Consensus 370 ~~~~~k~~ 377 (377)
+++.+|.|
T Consensus 392 ~~~~~~~~ 399 (400)
T KOG0680|consen 392 SWCTKKRF 399 (400)
T ss_pred hhhhhhcc
Confidence 99998876
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=5.9e-53 Score=389.59 Aligned_cols=364 Identities=28% Similarity=0.571 Sum_probs=310.2
Q ss_pred CCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCc-ceeeccccCCccCCHHHH
Q 017078 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDM 84 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~~~~~~ 84 (377)
...|||||+||+.+|+||+|+..|+++|++.+.++++.... ..-.+||++....... ...++||++.++++|+.+
T Consensus 22 n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~----~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~ 97 (645)
T KOG0681|consen 22 NTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLG----ASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELM 97 (645)
T ss_pred CCCcEEEeCCceeEeecccCCCCccchhhhhhccccccccc----cccccccchhhhhhhhhccCCCCCcCCccccHHHH
Confidence 36789999999999999999999999999999999865432 2233677765443221 346899999999999999
Q ss_pred HHHHHHHhccccCCCC--CCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhc-cCC---ceEEEEeCC
Q 017078 85 EKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYA-SGR---TTGIVLDSG 158 (377)
Q Consensus 85 ~~~~~~~~~~~L~~~~--~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~-~g~---~~~lVVDiG 158 (377)
|++++|+| .+|+.+. -+||+++|++..+|...|..+.++|||.+|+|+|.+--+++.++|. ++. .+|+||++|
T Consensus 98 E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g 176 (645)
T KOG0681|consen 98 EQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMG 176 (645)
T ss_pred HHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecC
Confidence 99999998 8899987 4899999999999999999999999999999999999999999983 333 369999999
Q ss_pred CCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCC---
Q 017078 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTS--- 235 (377)
Q Consensus 159 ~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~--- 235 (377)
++.|.|.||.||..+...++++++||.+...||.++|+.++.-+.....+..++.++..+||++.||.+++......
T Consensus 177 ~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~ 256 (645)
T KOG0681|consen 177 HSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYY 256 (645)
T ss_pred CCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999998776655555566778888999998888876643211100
Q ss_pred ----------------------------------------------------------------------CCccceEE--
Q 017078 236 ----------------------------------------------------------------------SAVEKSYE-- 243 (377)
Q Consensus 236 ----------------------------------------------------------------------~~~~~~~~-- 243 (377)
.+....|.
T Consensus 257 d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll 336 (645)
T KOG0681|consen 257 DENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLL 336 (645)
T ss_pred hccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhh
Confidence 00000000
Q ss_pred -c------------------------------------------------------------------------------
Q 017078 244 -L------------------------------------------------------------------------------ 244 (377)
Q Consensus 244 -l------------------------------------------------------------------------------ 244 (377)
+
T Consensus 337 ~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~ 416 (645)
T KOG0681|consen 337 NVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKD 416 (645)
T ss_pred cchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0
Q ss_pred ------------------------------CC------------------------------------------------
Q 017078 245 ------------------------------PD------------------------------------------------ 246 (377)
Q Consensus 245 ------------------------------pd------------------------------------------------ 246 (377)
||
T Consensus 417 r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~ 496 (645)
T KOG0681|consen 417 RKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTT 496 (645)
T ss_pred hhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCccccccccccc
Confidence 00
Q ss_pred -------------CcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHH
Q 017078 247 -------------GQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD 313 (377)
Q Consensus 247 -------------~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~ 313 (377)
...+.++.+|+++||++|+|+++|.+++||.+++..++++.|.+.++.+++||+||||+|.+||+++
T Consensus 497 d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmke 576 (645)
T KOG0681|consen 497 DPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKE 576 (645)
T ss_pred CcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHH
Confidence 0134567799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcccccccccccHHHHhhcCCccccc
Q 017078 314 RMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHR 374 (377)
Q Consensus 314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~ 374 (377)
||.+||..+.|..++|.|+.+.+|.++||.||+.+|...+|..-++||+||+|+|+..++.
T Consensus 577 Ri~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kE 637 (645)
T KOG0681|consen 577 RIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKE 637 (645)
T ss_pred HHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987764
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=2.6e-51 Score=357.59 Aligned_cols=368 Identities=39% Similarity=0.684 Sum_probs=311.4
Q ss_pred CCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCc--------cccCCCcceeeccccccccCcceeeccccCCc
Q 017078 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 77 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~--------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~ 77 (377)
.+.++|+|+|+.++|.||+|...|++++|++++......+ ..+..+.+.++|++++. .+.+.+.+|++||.
T Consensus 3 ~~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~ 81 (415)
T KOG0678|consen 3 GNLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQ 81 (415)
T ss_pred CCCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceeccc
Confidence 3455999999999999999999999999999876432211 11234567899999988 55788999999999
Q ss_pred cCCHHHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccC--------C
Q 017078 78 VSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASG--------R 149 (377)
Q Consensus 78 i~~~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~ 149 (377)
+.||+.++++|...+.+.|...|++|..++++|+.++.+.|+...++.||.++++.+++.-++++|+-+.- .
T Consensus 82 ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ 161 (415)
T KOG0678|consen 82 VEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERF 161 (415)
T ss_pred cccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999988775442 2
Q ss_pred ceEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHH
Q 017078 150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL 229 (377)
Q Consensus 150 ~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~ 229 (377)
-+|+|||.|.+.|.|.||.+|+++-++++.+|+.|++++..+.++|++++...+.....+.++.+|+++||+.+|.-.+.
T Consensus 162 ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef 241 (415)
T KOG0678|consen 162 LTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEF 241 (415)
T ss_pred eeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHH
Confidence 58999999999999999999999999999999999999999999999888888777778999999999999998887766
Q ss_pred hhccCCCCc-cceE---EcCCC--cEEeeCCcccccccccCCCccCCC-cCCCHHHHHHHHHhcCChhHHHHhhcCceec
Q 017078 230 ETSKTSSAV-EKSY---ELPDG--QVITIGAERFRCPEVLFQPSMIGM-EAAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302 (377)
Q Consensus 230 ~~~~~~~~~-~~~~---~lpd~--~~i~i~~~~~~~~E~lf~p~~~~~-~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~ 302 (377)
.++...+.. .+.| ..-.+ ..++++.+||..+|++|.|..... ....+++.+...|+.||+|.|+.|++||++.
T Consensus 242 ~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivls 321 (415)
T KOG0678|consen 242 AKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLS 321 (415)
T ss_pred HHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhc
Confidence 554332111 1111 11112 246678899999999999987553 3567999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHhhCC--------------CCceEEEECCCCCccceehhhHHhhcccccccccccHHHHhhcC
Q 017078 303 GGSTMFPGIADRMSKEISALAP--------------SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESG 368 (377)
Q Consensus 303 GG~s~i~g~~~rl~~eL~~~~~--------------~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G 368 (377)
||.+..++|..|+++++..+.. ....+.+....-..+++|.|++++|+...|-..+=||++|+|.|
T Consensus 322 ggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g 401 (415)
T KOG0678|consen 322 GGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYG 401 (415)
T ss_pred cchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhC
Confidence 9999999999999998875531 11235555555668999999999999999999999999999999
Q ss_pred Cccccc
Q 017078 369 PSIVHR 374 (377)
Q Consensus 369 ~~~~~~ 374 (377)
++|++.
T Consensus 402 ~si~r~ 407 (415)
T KOG0678|consen 402 PSICRT 407 (415)
T ss_pred hhhhhc
Confidence 999875
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=4.3e-41 Score=308.95 Aligned_cols=312 Identities=19% Similarity=0.390 Sum_probs=239.8
Q ss_pred cceeeccccCCccCC----------HHHHHHHHHHHhccccCCCC---CCCcEEEeeCCCCChHHHHhhhhhcccccCCC
Q 017078 66 ILTLKYPIEHGIVSN----------WDDMEKIWHHTFYNELRVAP---EEHPVLLTEAPLNPKANREKMTQIMFETFNAP 132 (377)
Q Consensus 66 ~~~~~~p~~~g~i~~----------~~~~~~~~~~~~~~~L~~~~---~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
.+.+++|+++|.+.- .+++.++|+|++.+.|++.+ ..+.+|+++|..+.+.+.+.++.++|-+++|.
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~ 257 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN 257 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence 468899999997632 37789999999989999986 46899999999999999999999999999999
Q ss_pred eEEeecchhhhhhccCCceEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCc-----cchhH
Q 017078 133 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSF-----TTTAE 207 (377)
Q Consensus 133 ~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~-----~~~~~ 207 (377)
++.++.+++||+|++|.+++||||||+..|+|+||.||..+.++...+++||.||++.+..+|++.+..+ ....+
T Consensus 258 ~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d 337 (618)
T KOG0797|consen 258 SAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPID 337 (618)
T ss_pred eEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887754 34567
Q ss_pred HHHHHHHhHhccccccCHHH-HHhhc--cCCCC--ccce--------------------------------EEcCCCc--
Q 017078 208 REIVRDMKEKLAYIALDYEQ-ELETS--KTSSA--VEKS--------------------------------YELPDGQ-- 248 (377)
Q Consensus 208 ~~~~~~ik~~~~~v~~~~~~-~~~~~--~~~~~--~~~~--------------------------------~~lpd~~-- 248 (377)
+.+++++|+++|......-. ....+ ..+.. ...+ |.+||.+
T Consensus 338 ~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~ 417 (618)
T KOG0797|consen 338 WLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDL 417 (618)
T ss_pred HHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccc
Confidence 89999999999987532111 11110 11110 0111 1122100
Q ss_pred ---------------------EEeeC-------CcccccccccCCCcc-----------------------------CCC
Q 017078 249 ---------------------VITIG-------AERFRCPEVLFQPSM-----------------------------IGM 271 (377)
Q Consensus 249 ---------------------~i~i~-------~~~~~~~E~lf~p~~-----------------------------~~~ 271 (377)
.++++ ..|-..+|..-.+.+ .-.
T Consensus 418 fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~ 497 (618)
T KOG0797|consen 418 FDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYE 497 (618)
T ss_pred cchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceec
Confidence 00000 001111111111110 000
Q ss_pred c----CCCHHHHHHHHHhcC-ChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCC----ceEEEECCC---CCcc
Q 017078 272 E----AAGIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSS----MKIKVVAPP---ERKY 339 (377)
Q Consensus 272 ~----~~~l~~~I~~~i~~~-~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~----~~v~v~~~~---~~~~ 339 (377)
. ...+.+.|..+|..+ ..+.++.|.+.|.++||+...||+.+.|++.+....|.. ..|.|..+| +|++
T Consensus 498 ~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~ 577 (618)
T KOG0797|consen 498 SFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQF 577 (618)
T ss_pred cccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchh
Confidence 1 124556688888877 567899999999999999999999999999988766652 247777665 8999
Q ss_pred ceehhhHHhhcccccccccccHHHHhhcCCcccccccC
Q 017078 340 SVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 340 ~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
-+|+||+|+|.++.-.++||++.||.-+|.++++.||.
T Consensus 578 VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 578 VAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred eEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 99999999999988899999999999999999999974
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.7e-38 Score=296.56 Aligned_cols=307 Identities=18% Similarity=0.240 Sum_probs=236.4
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccc----cCcceeeccccCCccCCHHHHH
Q 017078 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~~~~ 85 (377)
++||+||+++|+|+.++. +....||+++..+.. ++..++|+++.+. .....+.+|+++|.+.||+..+
T Consensus 11 vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e 82 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATE 82 (335)
T ss_pred eEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHH
Confidence 999999999999998775 456689999876531 2356899998765 2346789999999999999999
Q ss_pred HHHHHHhccccCCC-CCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCC
Q 017078 86 KIWHHTFYNELRVA-PEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGD 159 (377)
Q Consensus 86 ~~~~~~~~~~L~~~-~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~ 159 (377)
.+|++++.+.+... ....++++++|..++...|+.+.+ +||.+|++.++++++|+||++++|. .+++|||+|+
T Consensus 83 ~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~ 161 (335)
T PRK13930 83 AMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGG 161 (335)
T ss_pred HHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCC
Confidence 99999994444432 336789999999999998887777 6799999999999999999999987 5789999999
Q ss_pred CceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCcc
Q 017078 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVE 239 (377)
Q Consensus 160 ~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 239 (377)
++|+++++.+|.++ .....++||.++++.+.+++.++. .+. ...+.++++|+++|++..+.+.+.-... ...
T Consensus 162 gttdvs~v~~g~~~--~~~~~~lGG~~id~~l~~~l~~~~-~~~--~~~~~ae~~K~~~~~~~~~~~~~~~~~~---~~~ 233 (335)
T PRK13930 162 GTTEVAVISLGGIV--YSESIRVAGDEMDEAIVQYVRRKY-NLL--IGERTAEEIKIEIGSAYPLDEEESMEVR---GRD 233 (335)
T ss_pred CeEEEEEEEeCCEE--eecCcCchhHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHhhcCcCCCCCceEEEE---Ccc
Confidence 99999999999887 456789999999999999987542 221 1236799999999988654321100000 000
Q ss_pred ceEEcCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcC-ceeccCCCCCCChHHHHHHH
Q 017078 240 KSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSKE 318 (377)
Q Consensus 240 ~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~g~~~rl~~e 318 (377)
..+.+|+ .+.++.+++ .|++|.+ ...+.+.|.++|++++.+.+..+++| |+||||+|++|||.+||+++
T Consensus 234 ~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~ 303 (335)
T PRK13930 234 LVTGLPK--TIEISSEEV--REALAEP------LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEE 303 (335)
T ss_pred CCCCCCe--eEEECHHHH--HHHHHHH------HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHH
Confidence 1112222 344554544 4777765 23588889999999999999999997 99999999999999999999
Q ss_pred HHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 319 ISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 319 L~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+. +++....+|..++-.||++++.-
T Consensus 304 ~~--------~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 304 TG--------LPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HC--------CCceecCCHHHHHHHHHHHHHhC
Confidence 84 22333456788999999998743
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.2e-36 Score=285.99 Aligned_cols=306 Identities=19% Similarity=0.243 Sum_probs=229.7
Q ss_pred cEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccc----cCcceeeccccCCccCCHHHH
Q 017078 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDM 84 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~~~ 84 (377)
.|+||+||+++|+|+++++. .+.+||+++.+++. ...+++|+++... .....+.+|+++|.+.||+..
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~ 78 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVT 78 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHH
Confidence 59999999999999998876 56899999987652 2346899998765 255678899999999999999
Q ss_pred HHHHHHHhccccCCCCCCC-cEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCC
Q 017078 85 EKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 85 ~~~~~~~~~~~L~~~~~~~-~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
+.+|++++.+.+.. +..+ .+++++|..++...| +.++.+|+.++++.+.++++|+||++++|. .+++|||+|
T Consensus 79 ~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r-~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiG 156 (334)
T PRK13927 79 EKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVER-RAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIG 156 (334)
T ss_pred HHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHH-HHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeC
Confidence 99999999776666 5555 577777766555554 567778899999999999999999999987 467999999
Q ss_pred CCceEEEEe-eCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCC
Q 017078 159 DGVSHTVPI-YEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSA 237 (377)
Q Consensus 159 ~~~t~i~pv-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 237 (377)
+++|+++++ .+|....+ ..++||+++|+.|.+++.++. .+. .+.+.++++|+++|++..+.+.. .... ..
T Consensus 157 ggttdvs~v~~~~~~~~~---~~~lGG~~id~~l~~~l~~~~-~~~--~~~~~ae~iK~~~~~~~~~~~~~--~~~~-~~ 227 (334)
T PRK13927 157 GGTTEVAVISLGGIVYSK---SVRVGGDKFDEAIINYVRRNY-NLL--IGERTAERIKIEIGSAYPGDEVL--EMEV-RG 227 (334)
T ss_pred CCeEEEEEEecCCeEeeC---CcCChHHHHHHHHHHHHHHHh-CcC--cCHHHHHHHHHHhhccCCCCCCc--eEEE-eC
Confidence 999999999 66655433 358999999999999986432 221 13456999999999875432100 0000 00
Q ss_pred ccceEEcCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcC-ceeccCCCCCCChHHHHH
Q 017078 238 VEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 238 ~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~g~~~rl~ 316 (377)
....+.+|+ .+.++.+++ .|++|.| ..++.+.|.++|.+++.+.++.++++ |+||||+|++||+.+||+
T Consensus 228 ~~~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~ 297 (334)
T PRK13927 228 RDLVTGLPK--TITISSNEI--REALQEP------LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLS 297 (334)
T ss_pred cccCCCCCe--EEEECHHHH--HHHHHHH------HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHH
Confidence 000111221 345555555 3777765 23588999999999998888888874 999999999999999999
Q ss_pred HHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 317 KEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+++. +++....+|..++-.||++++.-
T Consensus 298 ~~~~--------~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 298 EETG--------LPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHC--------CCcEecCCHHHHHHHHHHHHHhh
Confidence 9983 22334456789999999998743
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.5e-35 Score=278.09 Aligned_cols=310 Identities=16% Similarity=0.213 Sum_probs=232.1
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccc----cCcceeeccccCCccCCHHHHH
Q 017078 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~~~~ 85 (377)
+.||+||+++++...+ ..-....||+++..++.+ +....-+++|++|... .....+++|+++|.+.||+..+
T Consensus 5 ~giDlGt~~s~i~~~~-~~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 5 IGIDLGTANTLVYVKG-RGIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eEEecCcceEEEEECC-CCEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 8999999999986543 233446789988764421 1012346799998775 2567789999999999999999
Q ss_pred HHHHHHhccccCCCCCC-CcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCC
Q 017078 86 KIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGD 159 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~-~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~ 159 (377)
++|+|++.+.+...... .++++++|+.++..+|+. ++.+|+.++++.+.++++|+||++++|. .+++|||+|+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 99999997666532222 269999999999999987 5557799999999999999999999987 6899999999
Q ss_pred CceEEEEe-eCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCc
Q 017078 160 GVSHTVPI-YEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAV 238 (377)
Q Consensus 160 ~~t~i~pv-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
++|+++++ .+|....+ ..++||+++++.|.+++.++. .. ..+.+.++++|+++|++..+..++.. ... ...
T Consensus 160 gttdvs~v~~~~~~~~~---~~~lGG~did~~l~~~l~~~~-~~--~~~~~~ae~lK~~l~~~~~~~~~~~~-~~~-~~~ 231 (333)
T TIGR00904 160 GTTEVAVISLGGIVVSR---SIRVGGDEFDEAIINYIRRTY-NL--LIGEQTAERIKIEIGSAYPLNDEPRK-MEV-RGR 231 (333)
T ss_pred CeEEEEEEEeCCEEecC---CccchHHHHHHHHHHHHHHHh-cc--cCCHHHHHHHHHHHhccccccccccc-eee-cCc
Confidence 99999999 66665543 458999999999999886432 11 11346799999999987554211110 000 001
Q ss_pred cceEEcCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhc-CceeccCCCCCCChHHHHHH
Q 017078 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 239 ~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~~rl~~ 317 (377)
...+.+|++. .++.+ .+.|++|.| ..++.+.|.+++++++.+.+..+++ +|+||||+|++||+.+||++
T Consensus 232 ~~~~~~~~~~--~i~~~--~~~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~ 301 (333)
T TIGR00904 232 DLVTGLPRTI--EITSV--EVREALQEP------VNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSK 301 (333)
T ss_pred cccCCCCeEE--EECHH--HHHHHHHHH------HHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHH
Confidence 1223445443 33322 566888876 2358888999999999998888986 79999999999999999999
Q ss_pred HHHhhCCCCceEEEECCCCCccceehhhHHhhc
Q 017078 318 EISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
++. +.+....+|..++-.||++++.
T Consensus 302 ~~~--------~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 302 ETG--------LPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHC--------CCceecCChHHHHHHHHHHHHh
Confidence 993 2344456789999999999864
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=3.8e-35 Score=274.82 Aligned_cols=302 Identities=18% Similarity=0.322 Sum_probs=229.3
Q ss_pred cEEEeCCCCceEEeeeCCCCCC-CCCCceeEeeCCCCccccCCCcceeecccccccc----CcceeeccccCCccCCHHH
Q 017078 9 PLVCDNGTGMVKAGFAGDDAPR-AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~-~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~~~~~ 83 (377)
.+.||+||+++++ |... .+. ...||+++..... ..-.+||++|.... +...+.+|+++|.|.||+.
T Consensus 6 ~~giDlGt~~~~i-~~~~-~~~~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~ 76 (335)
T PRK13929 6 EIGIDLGTANILV-YSKN-KGIILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDM 76 (335)
T ss_pred eEEEEcccccEEE-EECC-CcEEecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHH
Confidence 5999999999998 4322 233 3468888764321 12357999997763 4567789999999999999
Q ss_pred HHHHHHHHhcc---ccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccC-----CceEEEE
Q 017078 84 MEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASG-----RTTGIVL 155 (377)
Q Consensus 84 ~~~~~~~~~~~---~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVV 155 (377)
.+.+|++++.+ .++..+...++++++|+.++..+|+.+.+ +++.+|++.+.++++|+||++++| ..+++||
T Consensus 77 ~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvv 155 (335)
T PRK13929 77 TTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVV 155 (335)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEE
Confidence 99999999863 46666656789999999999999999999 779999999999999999999997 4589999
Q ss_pred eCCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCC
Q 017078 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTS 235 (377)
Q Consensus 156 DiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 235 (377)
|+|+++|+++++..|..+ .....++||++++++|.+++... +.+.. +...+|++|+++|++..+..++.....
T Consensus 156 DiG~gtt~v~vi~~~~~~--~~~~~~~GG~~id~~l~~~l~~~-~~~~~--~~~~AE~iK~~l~~~~~~~~~~~~~v~-- 228 (335)
T PRK13929 156 DIGGGTTEVAIISFGGVV--SCHSIRIGGDQLDEDIVSFVRKK-YNLLI--GERTAEQVKMEIGYALIEHEPETMEVR-- 228 (335)
T ss_pred EeCCCeEEEEEEEeCCEE--EecCcCCHHHHHHHHHHHHHHHH-hCcCc--CHHHHHHHHHHHcCCCCCCCCceEEEe--
Confidence 999999999999555444 33457899999999999998753 22222 346799999999997544221100000
Q ss_pred CCccceEEcCCCcEEeeCCcccc--cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhc-CceeccCCCCCCChH
Q 017078 236 SAVEKSYELPDGQVITIGAERFR--CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIA 312 (377)
Q Consensus 236 ~~~~~~~~lpd~~~i~i~~~~~~--~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~ 312 (377)
.....+.+| ..+.++.+++. +.|.+|+ +.+.|.++|.+++.+.+..+++ +|+||||+|++|||.
T Consensus 229 -g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~ 295 (335)
T PRK13929 229 -GRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIK 295 (335)
T ss_pred -CCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHH
Confidence 000011222 35666666665 4666654 8999999999999999989998 699999999999999
Q ss_pred HHHHHHHHhhCCCCceEEEECCCCCccceehhhHHh
Q 017078 313 DRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 313 ~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
+||++++.. + +....+|..++-.|+..+
T Consensus 296 e~l~~~~~~------~--v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 296 EWLSEEIVV------P--VHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHCC------C--ceeCCCHHHHHHHHHHHH
Confidence 999999932 2 333567889999998776
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=1.3e-32 Score=252.20 Aligned_cols=305 Identities=19% Similarity=0.273 Sum_probs=218.9
Q ss_pred CcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccc----cCcceeeccccCCccCCHHH
Q 017078 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~~ 83 (377)
+-+.||+||.+|++ |..+..=.+..||+++..+.. ..-..+|++|..+ .....+.+|+++|.|.|++.
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~-------~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~ 73 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT-------GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEA 73 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHH
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCC-------CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHH
Confidence 46899999999999 444444445568888877653 3345789999775 35678999999999999999
Q ss_pred HHHHHHHHhccccCC-CCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeC
Q 017078 84 MEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDS 157 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~-~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi 157 (377)
.+.++++++++..+. ......++++.|...+..+|+.+.+.+ ..+|+..|+++++|+|||+++|. ...+||||
T Consensus 74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 999999999666664 345667999999999999999999998 56999999999999999999985 47899999
Q ss_pred CCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCC
Q 017078 158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSA 237 (377)
Q Consensus 158 G~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 237 (377)
|+++|+++.+..|.++ ....+++||+++++.+.+++++++ ++. .....+|++|.+++++....++. ...
T Consensus 153 G~GtTdiavislggiv--~s~si~~gG~~~DeaI~~~ir~~y-~l~--Ig~~tAE~iK~~~g~~~~~~~~~--~~~---- 221 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIV--ASRSIRIGGDDIDEAIIRYIREKY-NLL--IGERTAEKIKIEIGSASPPEEEE--SME---- 221 (326)
T ss_dssp -SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHHHHHH-SEE----HHHHHHHHHHH-BSS--HHHH--EEE----
T ss_pred CCCeEEEEEEECCCEE--EEEEEEecCcchhHHHHHHHHHhh-Ccc--cCHHHHHHHHHhcceeeccCCCc--eEE----
Confidence 9999999999999998 668899999999999999998664 221 24578999999999886443222 100
Q ss_pred ccceEEcCCCcE--EeeC-CcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcC-ceeccCCCCCCChHH
Q 017078 238 VEKSYELPDGQV--ITIG-AERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIAD 313 (377)
Q Consensus 238 ~~~~~~lpd~~~--i~i~-~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~g~~~ 313 (377)
-.--.+-+|.. +.++ .+-..+.+..+.+ +.+.|.++|.++|+++...+++| |+||||+|+++||.+
T Consensus 222 -v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~---------I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~ 291 (326)
T PF06723_consen 222 -VRGRDLITGLPKSIEITSSEVREAIEPPVDQ---------IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDE 291 (326)
T ss_dssp -EEEEETTTTCEEEEEEEHHHHHHHHHHHHHH---------HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHH
T ss_pred -EECccccCCCcEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHH
Confidence 00111222322 2222 1223333334333 89999999999999999887765 999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhc
Q 017078 314 RMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+|++++ .+.|...++|.+++..|+..+..
T Consensus 292 ~i~~~~--------~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 292 YISEET--------GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999 34566677889999999877653
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.98 E-value=9.4e-32 Score=252.60 Aligned_cols=305 Identities=18% Similarity=0.274 Sum_probs=220.6
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeecccccccc----CcceeeccccCCccCCHHHHH
Q 017078 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~~~~~~~ 85 (377)
+.||+||+++++... +..-.+..||.++..++. +.-.++|++|.... ....+.+|+++|.+.||+..+
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~~psvv~~~~~~-------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~ 77 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLNEPSVVAIDKNT-------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTE 77 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEccCCEEEEECCC-------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHH
Confidence 999999999999655 333334568888775432 12357899987652 345678999999999999999
Q ss_pred HHHHHHhccccCCC-CCCCc-EEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCC
Q 017078 86 KIWHHTFYNELRVA-PEEHP-VLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 86 ~~~~~~~~~~L~~~-~~~~~-vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
++|++++ +++... ...+| +++++|..++...|+ .++.+++.+|++.+.++++|+||++++|. .+++|||+|
T Consensus 78 ~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~~~~r~-~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiG 155 (336)
T PRK13928 78 KMLKYFI-NKACGKRFFSKPRIMICIPTGITSVEKR-AVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIG 155 (336)
T ss_pred HHHHHHH-HHHhccCCCCCCeEEEEeCCCCCHHHHH-HHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeC
Confidence 9999998 444333 44566 888998887776555 55555699999999999999999999987 679999999
Q ss_pred CCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCc
Q 017078 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAV 238 (377)
Q Consensus 159 ~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
+++|+++++..|..+. ....++||+++|+.+.+++..+. .+. .....++++|++++.+..+.... ..... ..
T Consensus 156 ggttdvsvv~~g~~~~--~~~~~lGG~did~~i~~~l~~~~-~~~--~~~~~ae~lK~~~~~~~~~~~~~--~~~v~-g~ 227 (336)
T PRK13928 156 GGTTDIAVLSLGGIVT--SSSIKVAGDKFDEAIIRYIRKKY-KLL--IGERTAEEIKIKIGTAFPGAREE--EMEIR-GR 227 (336)
T ss_pred CCeEEEEEEEeCCEEE--eCCcCCHHHHHHHHHHHHHHHHh-chh--cCHHHHHHHHHHhcccccccCCc--EEEEe-cc
Confidence 9999999999997773 34789999999999999986432 211 12356999999998764331100 00000 00
Q ss_pred cceEEcCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhc-CceeccCCCCCCChHHHHHH
Q 017078 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 239 ~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~~rl~~ 317 (377)
.....+|. .+.++.+++. |+++.+ ...+.+.|.+++.+++.+.+..+++ +|+||||+|++||+.++|++
T Consensus 228 ~~~~~~~~--~~~i~~~~~~--eii~~~------~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~ 297 (336)
T PRK13928 228 DLVTGLPK--TITVTSEEIR--EALKEP------VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAE 297 (336)
T ss_pred cccCCCce--EEEECHHHHH--HHHHHH------HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHH
Confidence 00001111 2344444433 454433 2247888899999998888888888 79999999999999999999
Q ss_pred HHHhhCCCCceEEEECCCCCccceehhhHHhhc
Q 017078 318 EISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
++.. .+....+|..++..||++++.
T Consensus 298 ~~~~--------~v~~~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 298 ETKV--------PVYIAEDPISCVALGTGKMLE 322 (336)
T ss_pred HHCC--------CceecCCHHHHHHHHHHHHHh
Confidence 9932 233345789999999999864
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.94 E-value=1.6e-26 Score=204.35 Aligned_cols=310 Identities=17% Similarity=0.214 Sum_probs=226.8
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccc----cCcceeeccccCCccCCHH
Q 017078 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~~~~ 82 (377)
.+.|.||+||.+|++- ..+..=-...||.++..+... ...-..+|++|..+ .+.....+|+++|+|.|++
T Consensus 6 s~diGIDLGTanTlV~-~k~kgIVl~ePSVVAi~~~~~-----~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~ 79 (342)
T COG1077 6 SNDIGIDLGTANTLVY-VKGKGIVLNEPSVVAIESEGK-----TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFE 79 (342)
T ss_pred cccceeeecccceEEE-EcCceEEecCceEEEEeecCC-----CceEEEehHHHHHHhccCCCCceEEeecCCcEeecHH
Confidence 3589999999999994 434444456688888765311 13346799999877 3556789999999999999
Q ss_pred HHHHHHHHHhccccCCC--CCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEE
Q 017078 83 DMEKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVL 155 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~--~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVV 155 (377)
..+.+++|.+++..+-. ...-.++++.|.-...-.|+.+.+.+ +..+...|+++++|.+|++++|. +..+||
T Consensus 80 ~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvv 158 (342)
T COG1077 80 VTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVV 158 (342)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEE
Confidence 99999999985444222 23345888999999999999999988 77999999999999999999986 458999
Q ss_pred eCCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCC
Q 017078 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTS 235 (377)
Q Consensus 156 DiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 235 (377)
|||+++|+|..+..|-++ ...+..+||+.+++.+.+++++++.-.. ....+|++|.+.+++..+...+..+...
T Consensus 159 DIGgGTTevaVISlggiv--~~~Sirv~GD~~De~Ii~yvr~~~nl~I---Ge~taE~iK~eiG~a~~~~~~~~~~~eV- 232 (342)
T COG1077 159 DIGGGTTEVAVISLGGIV--SSSSVRVGGDKMDEAIIVYVRKKYNLLI---GERTAEKIKIEIGSAYPEEEDEELEMEV- 232 (342)
T ss_pred EeCCCceeEEEEEecCEE--EEeeEEEecchhhHHHHHHHHHHhCeee---cHHHHHHHHHHhcccccccCCccceeeE-
Confidence 999999999999998888 6677889999999999999976533322 3456999999999986532211000000
Q ss_pred CCccceEEcCCCcEEeeCCc--ccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcC-ceeccCCCCCCChH
Q 017078 236 SAVEKSYELPDGQVITIGAE--RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIA 312 (377)
Q Consensus 236 ~~~~~~~~lpd~~~i~i~~~--~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~g~~ 312 (377)
......--+|. .+.++.+ +....|.+ ..|.+.|...+.++|.++-...+++ |++|||+|.+.||.
T Consensus 233 ~Grdl~~GlPk--~i~i~s~ev~eal~~~v----------~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD 300 (342)
T COG1077 233 RGRDLVTGLPK--TITINSEEIAEALEEPL----------NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLD 300 (342)
T ss_pred EeeecccCCCe--eEEEcHHHHHHHHHHHH----------HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCch
Confidence 00000001111 1222211 11222222 3488888899999999999999999 99999999999999
Q ss_pred HHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhh
Q 017078 313 DRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 313 ~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
++|.++. .+.+.-.++|-..+.+|+....
T Consensus 301 ~~i~~et--------~~pv~ia~~pL~~Va~G~G~~l 329 (342)
T COG1077 301 RLLSEET--------GVPVIIADDPLTCVAKGTGKAL 329 (342)
T ss_pred HhHHhcc--------CCeEEECCChHHHHHhccchhh
Confidence 9999887 4556666777777777765543
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.88 E-value=3.9e-22 Score=177.55 Aligned_cols=208 Identities=17% Similarity=0.206 Sum_probs=159.3
Q ss_pred eccccCCccCCHHHHHHHHHHHhcc---ccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhc
Q 017078 70 KYPIEHGIVSNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYA 146 (377)
Q Consensus 70 ~~p~~~g~i~~~~~~~~~~~~~~~~---~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~ 146 (377)
..|+++|.|.|++..+.+++++... .++ ..-..+++++|..++..+|+.+.+.+ +..|++.+.++++|+|++.+
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~ 104 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAV 104 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHH
Confidence 5789999999999999999999732 232 23467999999999999998877666 88999999999999999999
Q ss_pred cCCceEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHH
Q 017078 147 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYE 226 (377)
Q Consensus 147 ~g~~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 226 (377)
++....+|+|+|+++|+++.+.+|.++ .....++||+++++.+.+.+. .+.+.+|++|.+++.-
T Consensus 105 ~~~~~~~vvDiGggtt~i~i~~~G~i~--~~~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~~~~~----- 168 (239)
T TIGR02529 105 LQIKNGAVVDVGGGTTGISILKKGKVI--YSADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRGHKDE----- 168 (239)
T ss_pred hcCCCcEEEEeCCCcEEEEEEECCeEE--EEEeeecchHHHHHHHHHHhC---------CCHHHHHHHHHhcCCH-----
Confidence 888888999999999999999999888 567889999999999876662 1346688898875521
Q ss_pred HHHhhccCCCCccceEEcCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCC
Q 017078 227 QELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST 306 (377)
Q Consensus 227 ~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s 306 (377)
++. +...+.++ ..+.+.|.+++.+.+. +.|+||||+|
T Consensus 169 ~~~---------------------------~~~i~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a 205 (239)
T TIGR02529 169 EEI---------------------------FPVVKPVY---------QKMASIVKRHIEGQGV-------KDLYLVGGAC 205 (239)
T ss_pred HHH---------------------------HHHHHHHH---------HHHHHHHHHHHHhCCC-------CEEEEECchh
Confidence 110 00001111 1144555556654433 4799999999
Q ss_pred CCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHH
Q 017078 307 MFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 307 ~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
++||+.+.|++.+. +.+..+.+|.+++-+|+++
T Consensus 206 ~ipgl~e~l~~~lg--------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 206 SFSGFADVFEKQLG--------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred cchhHHHHHHHHhC--------CCcccCCCCCeehhheeec
Confidence 99999999999883 2334467889999999864
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.84 E-value=1.1e-19 Score=164.69 Aligned_cols=242 Identities=15% Similarity=0.146 Sum_probs=173.3
Q ss_pred CCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCHHHHH
Q 017078 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~~ 85 (377)
....++||+||+.+|+=.. +..+. .++ +|. ..+.++++|.+.|++...
T Consensus 23 ~~~~~~iDiGSssi~~vv~-~~~~~-----~~~-----------------~~~---------~~~~~vr~G~i~di~~a~ 70 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVL-DEDGQ-----PVA-----------------GAL---------EWADVVRDGIVVDFIGAV 70 (267)
T ss_pred CCEEEEEEccCceEEEEEE-cCCCC-----EEE-----------------EEe---------ccccccCCCEEeeHHHHH
Confidence 4566999999999997554 32232 111 111 235678999999999998
Q ss_pred HHHHHHhc---cccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCCCce
Q 017078 86 KIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 162 (377)
Q Consensus 86 ~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t 162 (377)
+.++++.. +.++.. -..++++.|...+..++..+.+.+ +..|++...++.+|.+++.+++...++|||||+++|
T Consensus 71 ~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~~~~-~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt 147 (267)
T PRK15080 71 TIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAIINVV-ESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTT 147 (267)
T ss_pred HHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHHHHH-HHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcE
Confidence 88888863 134443 356778899888777787777544 889999999999999999988877789999999999
Q ss_pred EEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccceE
Q 017078 163 HTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSY 242 (377)
Q Consensus 163 ~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
+++.+.+|.++ .....++||+++++.+.+.+. . +.+.+|.+|.+...- ++.
T Consensus 148 ~i~v~~~g~~~--~~~~~~~GG~~it~~Ia~~l~---i------~~~eAE~lK~~~~~~-----~~~------------- 198 (267)
T PRK15080 148 GISILKDGKVV--YSADEPTGGTHMSLVLAGAYG---I------SFEEAEQYKRDPKHH-----KEI------------- 198 (267)
T ss_pred EEEEEECCeEE--EEecccCchHHHHHHHHHHhC---C------CHHHHHHHHhccCCH-----HHH-------------
Confidence 99999999887 456789999999999987762 1 345688888764310 000
Q ss_pred EcCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhh
Q 017078 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISAL 322 (377)
Q Consensus 243 ~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~ 322 (377)
..+.+.++. .+.+.|.+.+.+. -.+.|+||||+|++||+.+.+++.+..
T Consensus 199 --------------~~ii~~~~~---------~i~~~i~~~l~~~-------~~~~IvLtGG~s~lpgl~e~l~~~lg~- 247 (267)
T PRK15080 199 --------------FPVVKPVVE---------KMASIVARHIEGQ-------DVEDIYLVGGTCCLPGFEEVFEKQTGL- 247 (267)
T ss_pred --------------HHHHHHHHH---------HHHHHHHHHHhcC-------CCCEEEEECCcccchhHHHHHHHHhCC-
Confidence 000011111 1344444444432 346899999999999999999999832
Q ss_pred CCCCceEEEECCCCCccceehhhHHhh
Q 017078 323 APSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 323 ~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
+ +..+++|.+++-+|+++|+
T Consensus 248 -----~--v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 -----P--VHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred -----C--cccCCCchHHHHHHHHhhC
Confidence 2 2336788999999998864
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.83 E-value=5.6e-20 Score=185.57 Aligned_cols=297 Identities=19% Similarity=0.223 Sum_probs=181.9
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceeEeeCCCCccccCCCcceeeccccccc------cCcceee---
Q 017078 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK--- 70 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~--- 70 (377)
..|.||+||+++++++..+..|. ..+||+++...+ ...++|+.|... .....++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Krli 73 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKK---------GDLLVGQIAKRQAVINPENTFYSVKRFI 73 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCC---------CCEEECHHHHHhHHhCccceehhhHHhc
Confidence 58999999999999998665554 345566555322 234555544321 0000011
Q ss_pred -------------ccc----------------cCCccCCHHHHHHHHHHHhc---cccCCCCCCCcEEEeeCCCCChHHH
Q 017078 71 -------------YPI----------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 71 -------------~p~----------------~~g~i~~~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
+|+ ....+...+....+++++.. ..++. .-..+|+++|..++..+|
T Consensus 74 G~~~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR 151 (621)
T CHL00094 74 GRKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQR 151 (621)
T ss_pred CCChHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence 111 11122334455566665542 22332 235699999999999999
Q ss_pred HhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCee---cccceEEecccHHHHHHH
Q 017078 119 EKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDH 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~~g~~---~~~~~~~~~~GG~~i~~~ 190 (377)
+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+..+.. +..+....++||.++++.
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~ 230 (621)
T CHL00094 152 QATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKK 230 (621)
T ss_pred HHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHH
Confidence 9888877 88999999999999999999875 46899999999999998855422 222334568999999999
Q ss_pred HHHHHHhc-----CCCccchhH-----HHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcC------CC-cEE--e
Q 017078 191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELP------DG-QVI--T 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp------d~-~~i--~ 251 (377)
|.+++.++ +.+...... ...++.+|+.++... ...+.+| +| ..+ .
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~ 294 (621)
T CHL00094 231 IVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT----------------QTEINLPFITATQTGPKHIEKT 294 (621)
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEEeecccCCCCCeeEEEE
Confidence 99887543 222211111 133566666655321 1111111 01 122 2
Q ss_pred eCCcccc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEE
Q 017078 252 IGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIK 330 (377)
Q Consensus 252 i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~ 330 (377)
+..++|. ..+.++.. +.+.|.+++.+. .+...-++.|+||||+|++|++.+.|++.+.. .
T Consensus 295 itR~~fe~l~~~l~~~---------~~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~ 355 (621)
T CHL00094 295 LTRAKFEELCSDLINR---------CRIPVENALKDA--KLDKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------K 355 (621)
T ss_pred EcHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccCChHHHHHHHHHhCC--------C
Confidence 3333332 22222221 334444555443 23344568899999999999999998877632 2
Q ss_pred EECCCCCccceehhhHHhhcc
Q 017078 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++..||+++|..
T Consensus 356 ~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 356 PNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred cCcCCCchhHHHhhhHHHHHH
Confidence 233457889999999999864
No 27
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.82 E-value=9.8e-20 Score=182.77 Aligned_cols=297 Identities=20% Similarity=0.221 Sum_probs=183.1
Q ss_pred cEEEeCCCCceEEeeeCCCCCC--------CCCCceeEeeCCCCccccCCCcceeeccccccc------cCcceee----
Q 017078 9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK---- 70 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~---- 70 (377)
+|.||+||+++.+++..+..|. ..+||+++...+ ...++|..|... .....++
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG 71 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD---------GGVEVGKEALAAAAEDPKNTISSVKRLMG 71 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC---------CCEEecHHHHHhhhhChhhhHHHHHHHhC
Confidence 4889999999999997655443 346777765432 135566655321 0000000
Q ss_pred -----------ccc--------------cCCccCCHHHHHHHHHHHhc---cccCCCCCCCcEEEeeCCCCChHHHHhhh
Q 017078 71 -----------YPI--------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMT 122 (377)
Q Consensus 71 -----------~p~--------------~~g~i~~~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~ 122 (377)
+|+ ..+.+...+....+++++.. ..++.. -..+|+++|..++..+|+.+.
T Consensus 72 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~ 149 (599)
T TIGR01991 72 RSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATK 149 (599)
T ss_pred CCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHH
Confidence 122 12233334445555555532 234332 357999999999999999888
Q ss_pred hhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEee--CCee-cccceEEecccHHHHHHHHHHH
Q 017078 123 QIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDHLMKI 194 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~--~g~~-~~~~~~~~~~GG~~i~~~l~~~ 194 (377)
+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.++
T Consensus 150 ~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 150 DAA-RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HHH-HHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 777 88999999999999999998863 4689999999999998774 3422 2222334689999999999999
Q ss_pred HHhc-CCCccchhH-----HHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcCCCcEE--eeCCcccc-cccccCC
Q 017078 195 LTER-GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVI--TIGAERFR-CPEVLFQ 265 (377)
Q Consensus 195 l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i--~i~~~~~~-~~E~lf~ 265 (377)
+.++ +.+...... ...++..|+.++.- ......+.. +|..+ .++.+.|. ..+.++.
T Consensus 229 l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~--------------~~~~i~i~~-~g~~~~~~itr~efe~l~~~ll~ 293 (599)
T TIGR01991 229 ILKQLGISADLNPEDQRLLLQAARAAKEALTDA--------------ESVEVDFTL-DGKDFKGKLTRDEFEALIQPLVQ 293 (599)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCC--------------ceEEEEEEE-CCcEEEEEEeHHHHHHHHHHHHH
Confidence 8654 332211111 12244455444321 111122222 33333 33333332 2222222
Q ss_pred CccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhh
Q 017078 266 PSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGG 345 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Ga 345 (377)
. +.+.|.+++.... +...-++.|+||||+|++|++.+++++.+.. .+....+|+.++..||
T Consensus 294 ~---------i~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GA 354 (599)
T TIGR01991 294 K---------TLSICRRALRDAG--LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGA 354 (599)
T ss_pred H---------HHHHHHHHHHHcC--CChhhCCEEEEECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHH
Confidence 2 4445555554432 2334468899999999999999999876632 1234568899999999
Q ss_pred HHhhcc
Q 017078 346 SILASL 351 (377)
Q Consensus 346 si~a~l 351 (377)
+++|..
T Consensus 355 ai~a~~ 360 (599)
T TIGR01991 355 AIQADL 360 (599)
T ss_pred HHHHHH
Confidence 999865
No 28
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.82 E-value=1.1e-19 Score=183.81 Aligned_cols=297 Identities=18% Similarity=0.228 Sum_probs=181.0
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceeEeeCCCCccccCCCcceeeccccccc------cCcceeec--
Q 017078 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY-- 71 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~-- 71 (377)
.+|.||+||+++++++..+..|. ..+||+++...+ ...++|++|... +....+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~---------~~~~vG~~A~~~~~~~p~~~i~~~Kr~i 73 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKD---------GERLVGQPAKRQAVTNPENTIFSIKRLM 73 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCC---------CCEEEcHHHHHhhhhCchhhHHHHHHHh
Confidence 57999999999999998655443 345666655322 234566655332 00011111
Q ss_pred --------------ccc-------------CCccCC-HHHHHHHHHHHh---ccccCCCCCCCcEEEeeCCCCChHHHHh
Q 017078 72 --------------PIE-------------HGIVSN-WDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREK 120 (377)
Q Consensus 72 --------------p~~-------------~g~i~~-~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~~~ 120 (377)
|++ +|.... .+....+++++. ...++. .-..+|+++|..++..+|+.
T Consensus 74 G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~--~v~~~VItVPa~f~~~qR~a 151 (627)
T PRK00290 74 GRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGE--KVTEAVITVPAYFNDAQRQA 151 (627)
T ss_pred CCCchHHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC--CCceEEEEECCCCCHHHHHH
Confidence 110 122222 233344555442 123332 23579999999999999998
Q ss_pred hhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCe--e-cccceEEecccHHHHHHHHH
Q 017078 121 MTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGY--A-LPHAILRLDLAGRDLTDHLM 192 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~~g~--~-~~~~~~~~~~GG~~i~~~l~ 192 (377)
+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++++.+.-+. . +..+....++||.++++.|.
T Consensus 152 ~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~ 230 (627)
T PRK00290 152 TKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRII 230 (627)
T ss_pred HHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHH
Confidence 87777 88999999999999999998864 5799999999999998775431 1 22233456899999999999
Q ss_pred HHHHhc-----CCCccchhH-----HHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcC----C--C-c--EEeeC
Q 017078 193 KILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELP----D--G-Q--VITIG 253 (377)
Q Consensus 193 ~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d--~-~--~i~i~ 253 (377)
+++.++ +.++..... ...++..|+.++.-. ...+.++ | | . .+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~----------------~~~i~i~~~~~d~~g~~~~~~~it 294 (627)
T PRK00290 231 DYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQ----------------QTEINLPFITADASGPKHLEIKLT 294 (627)
T ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------eEEEEEeecccCCCCCeEEEEEEC
Confidence 887543 222211110 123455555554211 1111111 1 1 1 23344
Q ss_pred Ccccc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEE
Q 017078 254 AERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVV 332 (377)
Q Consensus 254 ~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~ 332 (377)
.+.|. ..+.++.. +.+.|.+++..... ...-++.|+|+||+|++|.+.++|++.+.. .+.
T Consensus 295 R~~fe~l~~~l~~~---------~~~~i~~~l~~a~~--~~~~id~ViLvGGssriP~v~~~l~~~fg~--------~~~ 355 (627)
T PRK00290 295 RAKFEELTEDLVER---------TIEPCKQALKDAGL--SVSDIDEVILVGGSTRMPAVQELVKEFFGK--------EPN 355 (627)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhhCcEEEEECCcCCChHHHHHHHHHhCC--------CCC
Confidence 43332 22223222 45555555554432 234468899999999999999999877632 223
Q ss_pred CCCCCccceehhhHHhhcc
Q 017078 333 APPERKYSVWIGGSILASL 351 (377)
Q Consensus 333 ~~~~~~~~~w~Gasi~a~l 351 (377)
...+|+.++..||+++|..
T Consensus 356 ~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 356 KGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred cCcCChHHHHHhHHHHHHH
Confidence 4557889999999999864
No 29
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.81 E-value=2.2e-19 Score=181.95 Aligned_cols=214 Identities=18% Similarity=0.247 Sum_probs=143.5
Q ss_pred CCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEee--CCee-c
Q 017078 102 EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~--~g~~-~ 173 (377)
-..+|+++|..++..+|+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|.. +
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 457999999999999999888777 88999999999999999999975 4789999999999998774 5533 2
Q ss_pred ccceEEecccHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHhHhccccccCHHHHHhhccCCCCccceEE
Q 017078 174 PHAILRLDLAGRDLTDHLMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYE 243 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
..+.....+||.++++.|.+++..+ +.+...... ...++..|+.++.-. ...+.
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~----------------~~~i~ 316 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT----------------QTEIN 316 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------ceEEE
Confidence 2334456899999999999888643 222211100 123555666554211 11111
Q ss_pred c----CC--C-c--EEeeCCcccc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHH
Q 017078 244 L----PD--G-Q--VITIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD 313 (377)
Q Consensus 244 l----pd--~-~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~ 313 (377)
+ .| | . .+.++.+.|. ..+.+|.. +.+.|.+++.+.. +...-++.|+||||+|++|++.+
T Consensus 317 i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~ 385 (663)
T PTZ00400 317 LPFITADQSGPKHLQIKLSRAKLEELTHDLLKK---------TIEPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSE 385 (663)
T ss_pred EEeeccCCCCceEEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHH
Confidence 1 11 1 1 2334433332 22333322 4555556665542 23344688999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 314 RMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.|++.+.. .+....+|+.++..||+++|..
T Consensus 386 ~l~~~f~~--------~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 386 TVKKIFGK--------EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHHHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence 88877632 1233457889999999999864
No 30
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.81 E-value=1.3e-19 Score=182.69 Aligned_cols=296 Identities=18% Similarity=0.232 Sum_probs=180.0
Q ss_pred cEEEeCCCCceEEeeeCCCCCC--------CCCCceeEeeCCCCccccCCCcceeeccccccc------cCcceeec---
Q 017078 9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY--- 71 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~--- 71 (377)
+|.||+||+++++++..+..|. ..+||+++...+ ...++|+.|... +....+++
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG 72 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKN---------GERLVGQPAKRQAVTNPENTIYSIKRFMG 72 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC---------CCEEECHHHHHhhhhCchhhhHHHHHHhC
Confidence 6899999999999998665554 244565554322 245677665432 00111111
Q ss_pred -------------ccc------------CCccCC-HHHHHHHHHHHhc---cccCCCCCCCcEEEeeCCCCChHHHHhhh
Q 017078 72 -------------PIE------------HGIVSN-WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMT 122 (377)
Q Consensus 72 -------------p~~------------~g~i~~-~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~ 122 (377)
|+. .|.... .+....+++++.. ..++. .-..+|+++|..++..+|+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~--~v~~~VItVPa~f~~~qR~a~~ 150 (595)
T TIGR02350 73 RRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGE--KVTEAVITVPAYFNDAQRQATK 150 (595)
T ss_pred CCchHHHHHhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHH
Confidence 110 122122 2333445555431 23332 2356999999999999999888
Q ss_pred hhcccccCCCeEEeecchhhhhhccCC------ceEEEEeCCCCceEEEEeeC--Cee-cccceEEecccHHHHHHHHHH
Q 017078 123 QIMFETFNAPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIYE--GYA-LPHAILRLDLAGRDLTDHLMK 193 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~pv~~--g~~-~~~~~~~~~~GG~~i~~~l~~ 193 (377)
+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++++.+.- |.. +..+.....+||.++++.|.+
T Consensus 151 ~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~ 229 (595)
T TIGR02350 151 DAG-KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIID 229 (595)
T ss_pred HHH-HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHH
Confidence 876 88999999999999999998764 46899999999999987743 322 222333568999999999998
Q ss_pred HHHhc-----CCCccchhH-----HHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcC----C--C-c--EEeeCC
Q 017078 194 ILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELP----D--G-Q--VITIGA 254 (377)
Q Consensus 194 ~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d--~-~--~i~i~~ 254 (377)
++..+ +.++..... ...++..|+.++... ...+.++ | | . .+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~itr 293 (595)
T TIGR02350 230 WLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVL----------------STEINLPFITADASGPKHLEMTLTR 293 (595)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------ceEEEeeecccCCCCCeeEEEEEeH
Confidence 87532 222211100 123555666554311 1111111 1 1 1 233343
Q ss_pred cccc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEEC
Q 017078 255 ERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVA 333 (377)
Q Consensus 255 ~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~ 333 (377)
+.|. ..+.++.. +.+.|.+++.... +...-++.|+|+||+|++|++.+.+++.+.. .+..
T Consensus 294 ~~fe~l~~~l~~~---------~~~~i~~~l~~a~--~~~~~i~~V~LvGGssriP~v~~~i~~~f~~--------~~~~ 354 (595)
T TIGR02350 294 AKFEELTADLVER---------TKEPVRQALKDAG--LSASDIDEVILVGGSTRIPAVQELVKDFFGK--------EPNK 354 (595)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHhHCcEEEEECCcccChHHHHHHHHHhCC--------cccC
Confidence 3332 22223222 4455555555432 2234468899999999999999998876631 2344
Q ss_pred CCCCccceehhhHHhhcc
Q 017078 334 PPERKYSVWIGGSILASL 351 (377)
Q Consensus 334 ~~~~~~~~w~Gasi~a~l 351 (377)
..+|+.++..||+++|..
T Consensus 355 ~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 355 SVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred CcCcHHHHHHHHHHHHHH
Confidence 567889999999999864
No 31
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.81 E-value=3.4e-19 Score=179.40 Aligned_cols=218 Identities=17% Similarity=0.191 Sum_probs=142.5
Q ss_pred CCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEee--CCee-c
Q 017078 102 EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~--~g~~-~ 173 (377)
-..+|+++|.+++..+|+.+.+.+ +.+|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|.. +
T Consensus 160 v~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V 238 (657)
T PTZ00186 160 VSNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEV 238 (657)
T ss_pred cceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 357999999999999999887777 88999999999999999999874 4789999999999998875 6643 2
Q ss_pred ccceEEecccHHHHHHHHHHHHHhc-----CCCccchh-H----HHHHHHHhHhccccccCHHHHHhhccCCCCccceEE
Q 017078 174 PHAILRLDLAGRDLTDHLMKILTER-----GYSFTTTA-E----REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYE 243 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-~----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
..+.....+||.++++.|.+++..+ +.+..... . ...+|+.|+.++.... ......+.
T Consensus 239 ~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~------------~~i~i~~i 306 (657)
T PTZ00186 239 KATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME------------TEVNLPFI 306 (657)
T ss_pred EEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc------------eEEEEeee
Confidence 2333467999999999999887642 22221110 0 1335666666553210 00011111
Q ss_pred cC--CC---cEEeeCCcccc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHH
Q 017078 244 LP--DG---QVITIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 244 lp--d~---~~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~ 317 (377)
.. +| -.+.++.+.|. ..+.++.. +.+.+.+++.... +...-++.|+||||+|+||.+.+.+++
T Consensus 307 ~~~~~g~~~~~~~ItR~efe~l~~~l~~r---------~~~~v~~~L~~a~--~~~~dId~VvLVGGssriP~V~~~l~~ 375 (657)
T PTZ00186 307 TANADGAQHIQMHISRSKFEGITQRLIER---------SIAPCKQCMKDAG--VELKEINDVVLVGGMTRMPKVVEEVKK 375 (657)
T ss_pred ccCCCCCcceEEEecHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCCEEEEECCcccChHHHHHHHH
Confidence 11 11 12344444332 22233322 3444445554332 234456789999999999999998887
Q ss_pred HHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 318 EISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+... .....+|+.++..||+++|..
T Consensus 376 ~fg~~--------~~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 376 FFQKD--------PFRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred HhCCC--------ccccCCCchHHHHhHHHHHHH
Confidence 76321 123457889999999999864
No 32
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.81 E-value=5.5e-19 Score=176.37 Aligned_cols=226 Identities=16% Similarity=0.180 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHhc---cccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceE
Q 017078 81 WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTG 152 (377)
Q Consensus 81 ~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~ 152 (377)
.+....+++++-. ..++. .-..+|+++|..++..+|+.+.+.+ +..|++.+.++++|+||++++|. .+.
T Consensus 119 eei~a~iL~~lk~~ae~~lg~--~v~~aVITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~v 195 (595)
T PRK01433 119 PEIAAEIFIYLKNQAEEQLKT--NITKAVITVPAHFNDAARGEVMLAA-KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCY 195 (595)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCcHHHHHHHhcccCCCCEE
Confidence 3444555555531 23332 2357999999999999999888776 88999999999999999999874 357
Q ss_pred EEEeCCCCceEEEEee--CCee-cccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHH
Q 017078 153 IVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL 229 (377)
Q Consensus 153 lVVDiG~~~t~i~pv~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~ 229 (377)
+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.+++..+...-......+.++..|+.++.-.
T Consensus 196 lV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~ekaK~~LS~~~------- 268 (595)
T PRK01433 196 LVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKD------- 268 (595)
T ss_pred EEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCc-------
Confidence 9999999999998774 4422 22233456899999999999998754211111112234566666544211
Q ss_pred hhccCCCCccceEEcCCCcEEeeCCcccc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCC
Q 017078 230 ETSKTSSAVEKSYELPDGQVITIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF 308 (377)
Q Consensus 230 ~~~~~~~~~~~~~~lpd~~~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i 308 (377)
.+.. ..+.++.+.|. ..+.+|.. +.+.|.+++.... ..-++.|+|+||+|++
T Consensus 269 -----------~~~~---~~~~itr~efe~l~~~l~~~---------~~~~i~~~L~~a~----~~~Id~ViLvGGssri 321 (595)
T PRK01433 269 -----------SFNN---DNISINKQTLEQLILPLVER---------TINIAQECLEQAG----NPNIDGVILVGGATRI 321 (595)
T ss_pred -----------cccc---ceEEEcHHHHHHHHHHHHHH---------HHHHHHHHHhhcC----cccCcEEEEECCcccC
Confidence 0111 14555544442 33333332 4455555555443 2236889999999999
Q ss_pred CChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 309 PGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 309 ~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|.+.+.|++.+. .++..+.+|+.++..||+++|..
T Consensus 322 P~v~~~l~~~f~--------~~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 322 PLIKDELYKAFK--------VDILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred hhHHHHHHHHhC--------CCceecCCchHHHHHHHHHHHHH
Confidence 999888887662 12344567899999999999864
No 33
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.80 E-value=3.1e-19 Score=180.95 Aligned_cols=297 Identities=17% Similarity=0.209 Sum_probs=182.0
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceeEeeCCCCccccCCCcceeeccccccc------cCcceee---
Q 017078 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK--- 70 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~--- 70 (377)
.+|.||+||+++++++..+..|. ..+||+++...+ ...++|+.|... +....++
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Krli 110 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN---------GDRLVGQIAKRQAVVNPENTFFSVKRFI 110 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCC---------CCEEECHHHHHhhhhCchhhhHHHHHhh
Confidence 57999999999999998666554 344566554322 234566554321 0000000
Q ss_pred -------------ccc----------------cCCccCCHHHHHHHHHHHhc---cccCCCCCCCcEEEeeCCCCChHHH
Q 017078 71 -------------YPI----------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 71 -------------~p~----------------~~g~i~~~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
+|+ ....+...+....+++++.. ..++. .-..+|+++|..++..+|
T Consensus 111 G~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR 188 (673)
T PLN03184 111 GRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQR 188 (673)
T ss_pred CCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence 011 11122334555666666542 22332 235799999999999999
Q ss_pred HhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCee---cccceEEecccHHHHHHH
Q 017078 119 EKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDH 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~~g~~---~~~~~~~~~~GG~~i~~~ 190 (377)
+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+.-+.. +..+....++||.++++.
T Consensus 189 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~ 267 (673)
T PLN03184 189 TATKDAG-RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 267 (673)
T ss_pred HHHHHHH-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHH
Confidence 9887766 88999999999999999998874 47899999999999987743321 222233568999999999
Q ss_pred HHHHHHhc-----CCCccchhH-----HHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcC------CC-cEE--e
Q 017078 191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELP------DG-QVI--T 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp------d~-~~i--~ 251 (377)
|.+++..+ +.+...... ...+|..|+.++... ...+.++ ++ ..+ .
T Consensus 268 L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~ 331 (673)
T PLN03184 268 IVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT----------------QTSISLPFITATADGPKHIDTT 331 (673)
T ss_pred HHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------cceEEEEeeeccCCCCceEEEE
Confidence 99888643 222111110 223555565554321 1111111 11 222 3
Q ss_pred eCCcccc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEE
Q 017078 252 IGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIK 330 (377)
Q Consensus 252 i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~ 330 (377)
++.+.|. ..+.++.. +.+.|.+++..... ...-++.|+||||+|++|.+.++|++.+.. .
T Consensus 332 itR~~fe~l~~~l~~r---------~~~~i~~~L~~a~~--~~~dId~ViLvGGssriP~V~~~i~~~fg~--------~ 392 (673)
T PLN03184 332 LTRAKFEELCSDLLDR---------CKTPVENALRDAKL--SFKDIDEVILVGGSTRIPAVQELVKKLTGK--------D 392 (673)
T ss_pred ECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhHccEEEEECCccccHHHHHHHHHHhCC--------C
Confidence 4443332 22223222 44455555554432 234458899999999999999998877632 1
Q ss_pred EECCCCCccceehhhHHhhcc
Q 017078 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++..||+++|..
T Consensus 393 ~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 393 PNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred cccccCcchHHHHHHHHHHHH
Confidence 223446789999999999864
No 34
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.80 E-value=3.7e-19 Score=180.18 Aligned_cols=302 Identities=17% Similarity=0.217 Sum_probs=179.4
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceeEeeCCCCccccCCCcceeeccccccc------cCcceeec--
Q 017078 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY-- 71 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~-- 71 (377)
.+|.||+||+++++++..+..|. ..+||+++...+ ...+||..|... +..+.+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Krli 73 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKS---------GDRLVGQLAKRQAVTNAENTVYSIKRFI 73 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCC---------CCEEEcHHHHHhhhhCcccchHHHHHHh
Confidence 57999999999999998655554 235666665322 234566655321 00111111
Q ss_pred --------------cc-----cCC--------ccCC-HHHHHHHHHHHhc---cccCCCCCCCcEEEeeCCCCChHHHHh
Q 017078 72 --------------PI-----EHG--------IVSN-WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREK 120 (377)
Q Consensus 72 --------------p~-----~~g--------~i~~-~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~ 120 (377)
|+ .+| .... .+....+++++.. ..++. .-..+|+++|..++..+|+.
T Consensus 74 G~~~~d~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a 151 (653)
T PRK13411 74 GRRWDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGE--PVTQAVITVPAYFTDAQRQA 151 (653)
T ss_pred CCCccchhHHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCcHHHHH
Confidence 11 111 1112 2333344444421 23432 23579999999999999998
Q ss_pred hhhhcccccCCCeEEeecchhhhhhccCC------ceEEEEeCCCCceEEEEee--CCee-cccceEEecccHHHHHHHH
Q 017078 121 MTQIMFETFNAPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDHL 191 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~pv~--~g~~-~~~~~~~~~~GG~~i~~~l 191 (377)
+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|
T Consensus 152 ~~~Aa-~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l 230 (653)
T PRK13411 152 TKDAG-TIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCI 230 (653)
T ss_pred HHHHH-HHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHH
Confidence 88776 88999999999999999998874 3589999999999998664 2322 2223335689999999999
Q ss_pred HHHHHhc-----CCCccchhH-----HHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcCC---Cc--EEeeCCcc
Q 017078 192 MKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD---GQ--VITIGAER 256 (377)
Q Consensus 192 ~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd---~~--~i~i~~~~ 256 (377)
.+++.++ +.++..... ...+++.|+.++.-.. ......+...| +. .+.++.+.
T Consensus 231 ~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~------------~~i~i~~~~~d~~~~~~~~~~itR~~ 298 (653)
T PRK13411 231 VDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLT------------TSINLPFITADETGPKHLEMELTRAK 298 (653)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc------------eEEEEeeeccCCCCCeeEEEEEcHHH
Confidence 9887643 222211110 1234555555442100 00001111111 11 23334333
Q ss_pred cc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCC
Q 017078 257 FR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP 335 (377)
Q Consensus 257 ~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~ 335 (377)
|. ..+.++.. +.+.|.+++... .+...-++.|+|+||+|++|.+.++|++.+... .+....
T Consensus 299 fe~l~~~l~~~---------~~~~i~~~L~~a--~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~-------~~~~~~ 360 (653)
T PRK13411 299 FEELTKDLVEA---------TIEPMQQALKDA--GLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGK-------QPDRSV 360 (653)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHc--CCCHHHCcEEEEECCCCCcchHHHHHHHHcCCc-------CcCCCC
Confidence 32 22222222 444555555543 233455688999999999999999988766321 233445
Q ss_pred CCccceehhhHHhhcc
Q 017078 336 ERKYSVWIGGSILASL 351 (377)
Q Consensus 336 ~~~~~~w~Gasi~a~l 351 (377)
+|+.++..||+++|..
T Consensus 361 npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 361 NPDEAVALGAAIQAGV 376 (653)
T ss_pred CchHHHHHHHHHHHHh
Confidence 7889999999999864
No 35
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.80 E-value=4.9e-19 Score=178.96 Aligned_cols=297 Identities=18% Similarity=0.204 Sum_probs=179.0
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceeEeeCCCCccccCCCcceeeccccccc------cCcceeec--
Q 017078 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY-- 71 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~-- 71 (377)
.+|.||+||+++++++..+..|. ..+||+++...+ ...++|..|... +....+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~KRli 73 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKD---------GELLVGQLARRQLVLNPQNTFYNLKRFI 73 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCC---------CCEEECHHHHHhhHhCccceehHHhhhh
Confidence 57999999999999998655543 356777765432 234566655321 01111111
Q ss_pred --------------ccc-----C----------CccCC-HHHHHHHHHHHhc---cccCCCCCCCcEEEeeCCCCChHHH
Q 017078 72 --------------PIE-----H----------GIVSN-WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 72 --------------p~~-----~----------g~i~~-~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
|+. + +.... .+....+++++.. ..++.. -..+|+++|..++..+|
T Consensus 74 G~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~--v~~~VITVPa~f~~~qR 151 (668)
T PRK13410 74 GRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEP--VTGAVITVPAYFNDSQR 151 (668)
T ss_pred CCCchhhHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHH
Confidence 110 1 11111 2333444444431 234322 34699999999999999
Q ss_pred HhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEee--CCee-cccceEEecccHHHHHHH
Q 017078 119 EKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDH 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~--~g~~-~~~~~~~~~~GG~~i~~~ 190 (377)
+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~ 230 (668)
T PRK13410 152 QATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKR 230 (668)
T ss_pred HHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHH
Confidence 9887777 88999999999999999999874 4689999999999998765 3322 222334568999999999
Q ss_pred HHHHHHhc-----CCCccchhH-----HHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcC------CC-cE--Ee
Q 017078 191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELP------DG-QV--IT 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp------d~-~~--i~ 251 (377)
|.+++..+ +.++..... ...++..|..++... ...+.+| ++ .. ..
T Consensus 231 l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~ 294 (668)
T PRK13410 231 IVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS----------------VTDISLPFITATEDGPKHIETR 294 (668)
T ss_pred HHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEEeeeecCCCCCeeEEEE
Confidence 99887543 222211100 123455555544211 1112221 11 11 23
Q ss_pred eCCcccc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEE
Q 017078 252 IGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIK 330 (377)
Q Consensus 252 i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~ 330 (377)
++.+.|. .++.++.. +.+.|.+++... .+...-++.|+||||+|++|.+.+.+++.+.. .
T Consensus 295 itR~~FE~l~~~l~~r---------~~~~i~~~L~~a--g~~~~dId~VvLVGGssRiP~V~~~l~~~fg~--------~ 355 (668)
T PRK13410 295 LDRKQFESLCGDLLDR---------LLRPVKRALKDA--GLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPR--------E 355 (668)
T ss_pred ECHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccccHHHHHHHHHHcCC--------C
Confidence 3333332 22223222 444445555432 23344567899999999999888888765521 2
Q ss_pred EECCCCCccceehhhHHhhcc
Q 017078 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++..||+++|..
T Consensus 356 ~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 356 PNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred cccCCCCchHHHHhHHHHHHh
Confidence 233457789999999999865
No 36
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.79 E-value=4.8e-19 Score=178.21 Aligned_cols=295 Identities=19% Similarity=0.169 Sum_probs=178.2
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceeEeeCCCCccccCCCcceeeccccccc------cCccee----
Q 017078 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTL---- 69 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~---- 69 (377)
.+|.||+||+++.+++..+..|. ..+||+++... +...+|.+|... +....+
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~----------~~~~vG~~A~~~~~~~p~~ti~~~Krli 89 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLE----------DGIEVGYEARANAAQDPKNTISSVKRFM 89 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcC----------CCEEEcHHHHHhhHhCchhhHHHHHHHh
Confidence 56999999999999998655443 24566665432 225566655331 000000
Q ss_pred ------------eccc--------------cCCccCCHHHHHHHHHHHhc---cccCCCCCCCcEEEeeCCCCChHHHHh
Q 017078 70 ------------KYPI--------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREK 120 (377)
Q Consensus 70 ------------~~p~--------------~~g~i~~~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~ 120 (377)
..|+ ..+.+...+....+++++.. ..++. .-..+|+++|..++..+|+.
T Consensus 90 G~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a 167 (616)
T PRK05183 90 GRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQA 167 (616)
T ss_pred CCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHH
Confidence 0111 11222333444555555532 23332 23579999999999999998
Q ss_pred hhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEee--CCee-cccceEEecccHHHHHHHHH
Q 017078 121 MTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDHLM 192 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~--~g~~-~~~~~~~~~~GG~~i~~~l~ 192 (377)
+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.
T Consensus 168 ~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~ 246 (616)
T PRK05183 168 TKDAA-RLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLA 246 (616)
T ss_pred HHHHH-HHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHH
Confidence 87776 88999999999999999998764 3679999999999998775 3322 22233456899999999999
Q ss_pred HHHHhc-CCCccchhH-----HHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcCCCcEEeeCCcccc-cccccCC
Q 017078 193 KILTER-GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFR-CPEVLFQ 265 (377)
Q Consensus 193 ~~l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~-~~E~lf~ 265 (377)
+++.++ +.+...... ...++..|+.++.- ....+.+++-. -.++.+.|. ..+.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~i~~~~-~~itr~efe~l~~~l~~ 309 (616)
T PRK05183 247 DWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDA----------------DSVEVSVALWQ-GEITREQFNALIAPLVK 309 (616)
T ss_pred HHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCC----------------ceEEEEEecCC-CeEcHHHHHHHHHHHHH
Confidence 988654 222211100 12244445444321 11222222210 013322221 2222222
Q ss_pred CccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhh
Q 017078 266 PSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGG 345 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Ga 345 (377)
. +.+.|.+++.... +...-++.|+|+||+|++|.+.+.|++.+.. .+....+|+.++..||
T Consensus 310 ~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~GA 370 (616)
T PRK05183 310 R---------TLLACRRALRDAG--VEADEVKEVVMVGGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIGA 370 (616)
T ss_pred H---------HHHHHHHHHHHcC--CCcccCCEEEEECCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHHH
Confidence 1 4444445554332 2233457899999999999999998876632 1223567899999999
Q ss_pred HHhhcc
Q 017078 346 SILASL 351 (377)
Q Consensus 346 si~a~l 351 (377)
+++|..
T Consensus 371 Ai~a~~ 376 (616)
T PRK05183 371 AIQADI 376 (616)
T ss_pred HHHHHH
Confidence 999864
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.79 E-value=2.1e-18 Score=174.79 Aligned_cols=215 Identities=16% Similarity=0.224 Sum_probs=142.1
Q ss_pred CCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-------ceEEEEeCCCCceEEEEee--CCee
Q 017078 102 EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA 172 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~i~pv~--~g~~ 172 (377)
-..+|+++|.+++..+|+.+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+. +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHHHH-HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 357999999999999999888777 88999999999999999998863 4789999999999998764 4432
Q ss_pred -cccceEEecccHHHHHHHHHHHHHhc------CCCccchhH-----HHHHHHHhHhccccccCHHHHHhhccCCCCccc
Q 017078 173 -LPHAILRLDLAGRDLTDHLMKILTER------GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETSKTSSAVEK 240 (377)
Q Consensus 173 -~~~~~~~~~~GG~~i~~~l~~~l~~~------~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~ 240 (377)
+..+.....+||.++++.|.+++.++ +.++..... ...++..|+.++.. ...
T Consensus 219 ~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------------~~~ 282 (653)
T PTZ00009 219 EVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------------TQA 282 (653)
T ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC----------------ceE
Confidence 22223346899999999999888542 122211100 12345555554421 112
Q ss_pred eEEc---CCCcEE--eeCCcccc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHH
Q 017078 241 SYEL---PDGQVI--TIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 314 (377)
Q Consensus 241 ~~~l---pd~~~i--~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~r 314 (377)
.+.+ .++..+ .++.+.|. ..+.+|.. +.+.|.++|.....+ ..-++.|+|+||+|++|.+.+.
T Consensus 283 ~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~ 351 (653)
T PTZ00009 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFRN---------TLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSL 351 (653)
T ss_pred EEEEEeccCCceEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHH
Confidence 2222 233333 34444332 22333332 455566666654322 3446789999999999999988
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 315 MSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|++.+... .+....+|+.++..||+++|..
T Consensus 352 i~~~f~~~-------~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 352 IKDFFNGK-------EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred HHHHhCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence 88666321 2333457889999999999754
No 38
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.8e-16 Score=153.99 Aligned_cols=311 Identities=18% Similarity=0.178 Sum_probs=179.6
Q ss_pred CCCcEEEeCCCCceEEeeeCCC-CCCCCCCceeEeeCCCCccccCCCcceeeccccccc------cCcceeeccccCC--
Q 017078 6 DIQPLVCDNGTGMVKAGFAGDD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPIEHG-- 76 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~-~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~~~g-- 76 (377)
...+|.||+||+++.+++.... .|. ++++..+.+..+...........++|..+.+. ...+.+++.+..+
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~ 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC
Confidence 4578999999999999998765 344 33333332222221111112247788776553 1234445544432
Q ss_pred ----------ccCCH-HHHHHHHHHHh---ccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhh
Q 017078 77 ----------IVSNW-DDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVL 142 (377)
Q Consensus 77 ----------~i~~~-~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~ 142 (377)
..... +....++.++- ...|+. .-..+++++|.+++..+|..+.+.. +..|++.+.++++|+|
T Consensus 83 ~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~--~v~~~VItVPayF~d~qR~at~~A~-~iaGl~vlrlinEPtA 159 (579)
T COG0443 83 GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGE--KVTDAVITVPAYFNDAQRQATKDAA-RIAGLNVLRLINEPTA 159 (579)
T ss_pred CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCC--CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEEecchHH
Confidence 11222 23344444432 123322 3467999999999999998777766 8899999999999999
Q ss_pred hhhccCC-----ceEEEEeCCCCceEEEEeeC--Ce-ecccceEEecccHHHHHHHHHHHHHhc----C-CCccchhH--
Q 017078 143 SLYASGR-----TTGIVLDSGDGVSHTVPIYE--GY-ALPHAILRLDLAGRDLTDHLMKILTER----G-YSFTTTAE-- 207 (377)
Q Consensus 143 a~~~~g~-----~~~lVVDiG~~~t~i~pv~~--g~-~~~~~~~~~~~GG~~i~~~l~~~l~~~----~-~~~~~~~~-- 207 (377)
|++++|. .+-+|+|+|+++++++.|.= |. .+........+||++++..|..++..+ + .++.....
T Consensus 160 AAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~ 239 (579)
T COG0443 160 AALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAAL 239 (579)
T ss_pred HHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHH
Confidence 9999985 47899999999999997754 32 233445577999999999999887643 1 22222111
Q ss_pred ---HHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcCCCcEEee--CCcccccccccCCCccCCCcCCCHHHHHHH
Q 017078 208 ---REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITI--GAERFRCPEVLFQPSMIGMEAAGIHETTYN 282 (377)
Q Consensus 208 ---~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i--~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~ 282 (377)
...++..|..++.... ....+..-++. +.+ .-.|-.+ |-+..+. ...+.+.+.+
T Consensus 240 ~rL~~~ae~aK~~LS~~~~--------------~~i~~~~~~~~-~~~~~~ltR~~~-E~l~~dl-----l~r~~~~~~~ 298 (579)
T COG0443 240 QRLREAAEKAKIELSSATQ--------------TSINLPSIGGD-IDLLKELTRAKF-EELILDL-----LERTIEPVEQ 298 (579)
T ss_pred HHHHHHHHHHHHHcccccc--------------cccchhhcccc-chhhhhhhHHHH-HHHHHHH-----HHHHHHHHHH
Confidence 1334445554443211 11111111111 111 1111111 1111110 0002222222
Q ss_pred HHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 283 SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 283 ~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+++ +..+...-++-|+++||.++||=+.+.+.+.+. . ......+|+.++..||++.|..
T Consensus 299 al~--~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~----~----~~~~~inpdeava~GAa~qa~~ 357 (579)
T COG0443 299 ALK--DAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG----K----EPEKSINPDEAVALGAAIQAAV 357 (579)
T ss_pred HHH--HcCCChhhCceEEEccceeccHHHHHHHHHHhC----c----cccccCCccHHHHHHHHHHHHh
Confidence 222 223344566779999999999966666665553 1 3344557889999999998865
No 39
>PRK11678 putative chaperone; Provisional
Probab=99.69 E-value=2.4e-16 Score=152.22 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=113.0
Q ss_pred cEEEeCCCCceEEeeeCCCCC--------CCCCCceeEeeCCCCc-------------------------------cccC
Q 017078 9 PLVCDNGTGMVKAGFAGDDAP--------RAVFPSIVGRPRHTGV-------------------------------MVGM 49 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P--------~~~~ps~~~~~~~~~~-------------------------------~~~~ 49 (377)
.+.||+||+++-+++..+..| ...+||.++....... -...
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 478999999999999965433 3467777766421100 0011
Q ss_pred CCcceeecccccccc----Ccc----eeec-----cccCCccCCHH-HHHHHHHHHh---ccccCCCCCCCcEEEeeCCC
Q 017078 50 GQKDAYVGDEAQSKR----GIL----TLKY-----PIEHGIVSNWD-DMEKIWHHTF---YNELRVAPEEHPVLLTEAPL 112 (377)
Q Consensus 50 ~~~~~~vg~~~~~~~----~~~----~~~~-----p~~~g~i~~~~-~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~ 112 (377)
......+|.+|.+.. +.. .+++ ++..+.+...+ .+..+|.++- ...++. .-..+|++.|..
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g~--~v~~~VItvPa~ 159 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQA--AITQAVIGRPVN 159 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCc
Confidence 234567888875541 111 1222 23333333333 2344444442 122332 235799999998
Q ss_pred CC-----hHHHHh--hhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEeeCC----------
Q 017078 113 NP-----KANREK--MTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEG---------- 170 (377)
Q Consensus 113 ~~-----~~~~~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~~g---------- 170 (377)
+. ..+|+. .+.-+.+..|++.+.++++|+||+++++. .+.+|+|+|+++++++.|.-+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~ 239 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRS 239 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcc
Confidence 86 555543 24455588999999999999999999874 578999999999999887422
Q ss_pred -eecccceEEecccHHHHHHHHH
Q 017078 171 -YALPHAILRLDLAGRDLTDHLM 192 (377)
Q Consensus 171 -~~~~~~~~~~~~GG~~i~~~l~ 192 (377)
.++-.+ -..+||.++++.|.
T Consensus 240 ~~vla~~--G~~lGG~DfD~~L~ 260 (450)
T PRK11678 240 ASLLGHS--GQRIGGNDLDIALA 260 (450)
T ss_pred eeEEecC--CCCCChHHHHHHHH
Confidence 122111 24799999999996
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.66 E-value=2.4e-16 Score=159.99 Aligned_cols=234 Identities=19% Similarity=0.236 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhc---cccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC------ceE
Q 017078 82 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR------TTG 152 (377)
Q Consensus 82 ~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~ 152 (377)
+....+++++.. +.++.. -..+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++. .+-
T Consensus 114 ~~~~~~l~~l~~~a~~~~~~~--~~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~v 190 (602)
T PF00012_consen 114 ELSAMILKYLKEMAEKYLGEK--VTDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTV 190 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHTSB--EEEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEE
T ss_pred cccccchhhhcccchhhcccc--cccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccce
Confidence 444555555532 223322 246999999999999999888887 88999999999999999988763 478
Q ss_pred EEEeCCCCceEEEEee--CCee-cccceEEecccHHHHHHHHHHHHHhc-----CCCccchhH-----HHHHHHHhHhcc
Q 017078 153 IVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDHLMKILTER-----GYSFTTTAE-----REIVRDMKEKLA 219 (377)
Q Consensus 153 lVVDiG~~~t~i~pv~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~ 219 (377)
+|+|+|+++++++.+. +|.. +........+||.++++.|.+++.++ +.+...... ...++..|+.++
T Consensus 191 lv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls 270 (602)
T PF00012_consen 191 LVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLS 270 (602)
T ss_dssp EEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTT
T ss_pred eccccccceEeeeehhcccccccccccccccccccceecceeeccccccccccccccccccccccccccccccccccccc
Confidence 9999999999988774 4532 22334467899999999999988643 222221100 123455555544
Q ss_pred ccccCHHHHHhhccCCCCccceEE----cCCCcEEe--eCCcccc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHH
Q 017078 220 YIALDYEQELETSKTSSAVEKSYE----LPDGQVIT--IGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIR 292 (377)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~~~~~~----lpd~~~i~--i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~ 292 (377)
... .....+. ..++..+. ++.+.|. ..+.++.. +.+.|.+++..... .
T Consensus 271 ~~~--------------~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~---------~~~~i~~~l~~~~~--~ 325 (602)
T PF00012_consen 271 SND--------------NTEITISIESLYDDGEDFSITITREEFEELCEPLLER---------IIEPIEKALKDAGL--K 325 (602)
T ss_dssp TSS--------------SSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHH---------THHHHHHHHHHTT----
T ss_pred ccc--------------ccccccccccccccccccccccccceecccccccccc---------cccccccccccccc--c
Confidence 310 1111111 12244333 3333332 22233322 55666666665432 2
Q ss_pred HHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 293 KDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 293 ~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
..-++.|+|+||+|++|.+.+.|++.+. . .+....+|..++..||+++|..
T Consensus 326 ~~~i~~V~lvGG~sr~p~v~~~l~~~f~----~----~~~~~~~p~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 326 KEDIDSVLLVGGSSRIPYVQEALKELFG----K----KISKSVNPDEAVARGAALYAAI 376 (602)
T ss_dssp GGGESEEEEESGGGGSHHHHHHHHHHTT----S----EEB-SS-TTTHHHHHHHHHHHH
T ss_pred ccccceeEEecCcccchhhhhhhhhccc----c----ccccccccccccccccccchhh
Confidence 3445789999999999988777766553 1 3445567889999999999864
No 41
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.62 E-value=3.8e-14 Score=136.88 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=134.5
Q ss_pred ChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHH
Q 017078 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~ 188 (377)
+....+.+.+ +++..|+....++.+|+|+++++.. ...+|||+|+++|+++.+.+|.++ ....+++||++++
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHH
Confidence 3444555666 5588999999999999999998753 368999999999999999999988 7788999999999
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcCC--C-cEEeeCCcccccccccCC
Q 017078 189 DHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD--G-QVITIGAERFRCPEVLFQ 265 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--~-~~i~i~~~~~~~~E~lf~ 265 (377)
+.+...|. ...+.+|++|.+++....+... ....+.++. + ....++ +....+++..
T Consensus 241 ~dIa~~l~---------i~~~~AE~lK~~~g~~~~~~~~----------~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~ 299 (420)
T PRK09472 241 SDIAYAFG---------TPPSDAEAIKVRHGCALGSIVG----------KDESVEVPSVGGRPPRSLQ--RQTLAEVIEP 299 (420)
T ss_pred HHHHHHhC---------cCHHHHHHHHHhcceeccccCC----------CCceeEecCCCCCCCeEEc--HHHHHHHHHH
Confidence 99987762 1346799999988764322100 011222221 1 111111 1111122211
Q ss_pred CccCCCcCCCHHHHHHHHHhcCChhHHH-----HhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECC------
Q 017078 266 PSMIGMEAAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP------ 334 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~-----~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~------ 334 (377)
. ...|.+.|.+++..++..++. .+.+.|+||||+|+|||+.+.+++.+.. ++++..|
T Consensus 300 r------~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~ 367 (420)
T PRK09472 300 R------YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGL 367 (420)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCC
Confidence 0 111344555556555444433 3556799999999999999999988742 4454333
Q ss_pred ----CCCccceehhhHHhhcc
Q 017078 335 ----PERKYSVWIGGSILASL 351 (377)
Q Consensus 335 ----~~~~~~~w~Gasi~a~l 351 (377)
.+|.|++-.|...|+.-
T Consensus 368 ~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 368 TDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred hhhcCCcHHHHHHHHHHHhhh
Confidence 36889999999888753
No 42
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.62 E-value=1.4e-14 Score=138.06 Aligned_cols=181 Identities=17% Similarity=0.228 Sum_probs=118.5
Q ss_pred ChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHH
Q 017078 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~ 188 (377)
++...+.+.+.+ +.+|+..+.++.+|+|+++++.. ...+|||+|+++|+++.+.+|.++ ....+++||++++
T Consensus 156 ~~~~v~~~~~~~-~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~--~~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVKCV-ERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIR--YTKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHHHH-HHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEE--EEeeecchHHHHH
Confidence 556666666655 88999999999999999987643 368999999999999999999877 4678999999999
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcCC---CcEEeeCCcccc-cccccC
Q 017078 189 DHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD---GQVITIGAERFR-CPEVLF 264 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd---~~~i~i~~~~~~-~~E~lf 264 (377)
+.+.+.+. ...+.+|++|.+++....+.. .....+.++. +....++.+.+. +.+..+
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~ 293 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCASIPLE----------GPDENIEIPSVGERPPRSLSRKELAEIIEARA 293 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEecccCC----------CCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence 99887652 134669999999987532210 0011222211 112222221111 111111
Q ss_pred CCccCCCcCCCHHHHHH-HHHhcCChhHHHHhhcC-ceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECC
Q 017078 265 QPSMIGMEAAGIHETTY-NSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP 334 (377)
Q Consensus 265 ~p~~~~~~~~~l~~~I~-~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~ 334 (377)
. .+.+.|. +.+.+...+ . -+.+ |+||||+|++||+.+++++.+.. ++++..|
T Consensus 294 ~---------ei~~~i~~~~L~~~~~~--~-~i~~gIvLtGG~S~ipgi~~~l~~~~~~------~vr~~~P 347 (371)
T TIGR01174 294 E---------EILEIVKQKELRKSGFK--E-ELNGGIVLTGGGAQLEGIVELAEKVFDN------PVRIGLP 347 (371)
T ss_pred H---------HHHHHHHHHHHHhcCCc--c-cCCCEEEEeChHHcccCHHHHHHHHhCC------CeEEECC
Confidence 1 1444444 555443322 2 2345 99999999999999999988843 4565544
No 43
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.56 E-value=6.5e-14 Score=132.27 Aligned_cols=202 Identities=20% Similarity=0.266 Sum_probs=136.4
Q ss_pred ChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-----ceEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHH
Q 017078 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~ 188 (377)
+....++|.+++ |+.+.....++-+|+|++.+.-. -++++||+|+++|+|+.+.+|.+. +...+|+||+++|
T Consensus 163 ~~~~~~Nl~k~v-~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvgG~~vT 239 (418)
T COG0849 163 PKNILENLEKCV-ERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVGGDHVT 239 (418)
T ss_pred chHHHHHHHHHH-HHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeCccHHH
Confidence 556666677666 88999999999999999987643 489999999999999999999998 7788999999999
Q ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcCC-CcEEeeCCcccccccccCCCc
Q 017078 189 DHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPD-GQVITIGAERFRCPEVLFQPS 267 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd-~~~i~i~~~~~~~~E~lf~p~ 267 (377)
..+.+.|. .+.+.+|++|.+++....+.. .....++.|. |......-.+....++.-.
T Consensus 240 ~DIa~~l~---------t~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~~~~~t~~~ls~II~a-- 298 (418)
T COG0849 240 KDIAKGLK---------TPFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDIPRQVTRSELSEIIEA-- 298 (418)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcccchhhHHHHHHHHHh--
Confidence 99998883 245779999999987643321 1122222221 0000000111111111100
Q ss_pred cCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECC----------CCC
Q 017078 268 MIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP----------PER 337 (377)
Q Consensus 268 ~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~----------~~~ 337 (377)
....+.+++...|++.-. ...+...|+||||++.+||+.+-.++-+.. ++|+..| .+|
T Consensus 299 ----R~~Ei~~lV~~~l~~~g~--~~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~p 366 (418)
T COG0849 299 ----RVEEILELVKAELRKSGL--PNHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARNP 366 (418)
T ss_pred ----hHHHHHHHHHHHHHHcCc--cccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccCc
Confidence 011133444455544322 256778899999999999999877766642 4455444 358
Q ss_pred ccceehhhHHhhcc
Q 017078 338 KYSVWIGGSILASL 351 (377)
Q Consensus 338 ~~~~w~Gasi~a~l 351 (377)
.|++-.|.-.++..
T Consensus 367 ~fs~avGl~~~~~~ 380 (418)
T COG0849 367 AFSTAVGLLLYGAL 380 (418)
T ss_pred hhhhhHHHHHHHhh
Confidence 99999999888774
No 44
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.7e-12 Score=118.09 Aligned_cols=220 Identities=18% Similarity=0.233 Sum_probs=129.0
Q ss_pred CcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC------ceEEEEeCCCCceEEE--EeeCCee-c
Q 017078 103 HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTV--PIYEGYA-L 173 (377)
Q Consensus 103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~--pv~~g~~-~ 173 (377)
...|+++|.+++..+|+..-+ +--..|.+.+.++++|.+|++++|. .+-+|.|+|+++-+|+ -|-+|.- +
T Consensus 173 ~~AVvTvPAYFNDAQrQATKD-AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKD-AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhhhcc-cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 468999999999999985544 4467899999999999999999985 5889999999996665 5566743 3
Q ss_pred ccceEEecccHHHHHHHHHHHHHh-----cCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccceEEc---C
Q 017078 174 PHAILRLDLAGRDLTDHLMKILTE-----RGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYEL---P 245 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l---p 245 (377)
........+||.+++++..+++-+ .|.++.. +...+..++++.-.. +...++......++ -
T Consensus 252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~k--dnkA~~KLrRe~EkA---------KRaLSsqhq~riEIeS~f 320 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRK--DNKAVQKLRREVEKA---------KRALSSQHQVRIEIESLF 320 (663)
T ss_pred EecCCCcccCccchHHHHHHHHHHHHhhhcCCccch--hhHHHHHHHHHHHHH---------HhhhccccceEEeeeecc
Confidence 334456789999999988877643 2333322 334444444332110 10111111112221 1
Q ss_pred CCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcC--ChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhC
Q 017078 246 DGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA 323 (377)
Q Consensus 246 d~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~--~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~ 323 (377)
||..++-.-.|..+.|. ...|-..-.+-+++. +.++++.-++-|||+||.++|| ++++-|...+
T Consensus 321 dG~DfSEtLtRAkFEEl----------NmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIP----KvQqllk~fF 386 (663)
T KOG0100|consen 321 DGVDFSETLTRAKFEEL----------NMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIP----KVQQLLKDFF 386 (663)
T ss_pred ccccccchhhhhHHHHh----------hhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccCh----hHHHHHHHHh
Confidence 22222111112222111 011111112222222 5667777888999999999999 5555555555
Q ss_pred CCCceEEEECCCCCccceehhhHHhhcc
Q 017078 324 PSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.-. +...--+|+-++..||++-|..
T Consensus 387 ~GK---epskGinPdEAVAYGAAVQaGv 411 (663)
T KOG0100|consen 387 NGK---EPSKGINPDEAVAYGAAVQAGV 411 (663)
T ss_pred CCC---CccCCCChHHHHHhhhhhhhcc
Confidence 221 1111225677788888776643
No 45
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.3e-12 Score=123.03 Aligned_cols=214 Identities=17% Similarity=0.222 Sum_probs=134.4
Q ss_pred CcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC-------ceEEEEeCCCCceEEEEe--eCCe-e
Q 017078 103 HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPI--YEGY-A 172 (377)
Q Consensus 103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~i~pv--~~g~-~ 172 (377)
..++++.|..++..+|+..-+.. ..+|++.+.++++|.||++++|. .+-+|.|+|+++.+|.++ .+|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 45899999999999998777766 77999999999999999999873 467999999999888766 3442 2
Q ss_pred cccceEEecccHHHHHHHHHHHHHhc-----CCCccchh----H-HHHHHHHhHhccccccCHHHHHhhccCCCCccceE
Q 017078 173 LPHAILRLDLAGRDLTDHLMKILTER-----GYSFTTTA----E-REIVRDMKEKLAYIALDYEQELETSKTSSAVEKSY 242 (377)
Q Consensus 173 ~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~----~-~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
+.......++||.++++.|.+++... +.+..... . ...+|..|+.+... ...+.
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~----------------~~~~i 286 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSS----------------TQASI 286 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccc----------------cccee
Confidence 34445567999999999999887431 11111100 0 11133333333211 11111
Q ss_pred ---EcCCCcEEee--CCcccc-cccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHH
Q 017078 243 ---ELPDGQVITI--GAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 243 ---~lpd~~~i~i--~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~ 316 (377)
.|-+|..+.. ...||. .+.-||.. ..+.+..+|+..- +-+..++.||+|||.+++|.+..-++
T Consensus 287 ~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~--~dk~~i~~vvlVGGstriPk~~~ll~ 355 (620)
T KOG0101|consen 287 EIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAK--LDKSDIDEVVLVGGSTRIPKVQKLLE 355 (620)
T ss_pred ccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhc--cCccCCceeEEecCcccchHHHHHHH
Confidence 1223333322 223332 22334433 4444455554332 23445678999999999997766665
Q ss_pred HHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 317 KEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.-+.. -++..+-+|+.++..||++.|.+
T Consensus 356 d~f~~-------k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 356 DFFNG-------KELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred HHhcc-------cccccCCCHHHHHHhhHHHHhhh
Confidence 44422 13334557899999999999876
No 46
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.32 E-value=1.3e-12 Score=108.14 Aligned_cols=237 Identities=18% Similarity=0.189 Sum_probs=153.1
Q ss_pred CCCCcEEEeCCCCceEEeeeC-CCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCH--
Q 017078 5 EDIQPLVCDNGTGMVKAGFAG-DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW-- 81 (377)
Q Consensus 5 ~~~~~vviD~Gs~~~k~G~~~-~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~-- 81 (377)
+..-.|.+|+|+..+..=.-. +..|-.. .++..+-+++|.+.|+
T Consensus 27 ~sk~~vGVDLGT~~iV~~vlD~d~~Pvag---------------------------------~~~~advVRDGiVvdf~e 73 (277)
T COG4820 27 ESKLWVGVDLGTCDIVSMVLDRDGQPVAG---------------------------------CLDWADVVRDGIVVDFFE 73 (277)
T ss_pred cCceEEEeecccceEEEEEEcCCCCeEEE---------------------------------EehhhhhhccceEEehhh
Confidence 345668999999988864443 2234211 0112234567877775
Q ss_pred --HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCceEEEEeCCC
Q 017078 82 --DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGD 159 (377)
Q Consensus 82 --~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~ 159 (377)
+.++++.+.+ .+.|++... ..--..||-......+....+ +|..|....+.+++|.|+++-.+..+|-|||+|+
T Consensus 74 aveiVrrlkd~l-Ek~lGi~~t--ha~taiPPGt~~~~~ri~iNV-iESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGG 149 (277)
T COG4820 74 AVEIVRRLKDTL-EKQLGIRFT--HAATAIPPGTEQGDPRISINV-IESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHH-HHhhCeEee--eccccCCCCccCCCceEEEEe-ecccCceeeeecCCchhHHHHhccCCCcEEEeCC
Confidence 3344444444 567777642 222334555544444444444 4999999999999999999999999999999999
Q ss_pred CceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCcc
Q 017078 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVE 239 (377)
Q Consensus 160 ~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 239 (377)
++|-|+.+-+|.++ .....|.||.+++-.|.- .+++ +.+.+|++|+..---
T Consensus 150 GTTGIsi~kkGkVi--y~ADEpTGGtHmtLvlAG---~ygi------~~EeAE~~Kr~~k~~------------------ 200 (277)
T COG4820 150 GTTGISIVKKGKVI--YSADEPTGGTHMTLVLAG---NYGI------SLEEAEQYKRGHKKG------------------ 200 (277)
T ss_pred CcceeEEEEcCcEE--EeccCCCCceeEEEEEec---ccCc------CHhHHHHhhhccccc------------------
Confidence 99999999999999 667889999887765542 1233 234577777542100
Q ss_pred ceEEcCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHH
Q 017078 240 KSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 240 ~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL 319 (377)
+ |-|..-...++. +.+.+.+-|...++ ..+.|+||.+..||+++-++++|
T Consensus 201 --------~------Eif~~v~PV~eK---------MAeIv~~hie~~~i-------~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 201 --------E------EIFPVVKPVYEK---------MAEIVARHIEGQGI-------TDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred --------h------hcccchhHHHHH---------HHHHHHHHhccCCC-------cceEEecccccCccHHHHHHHHh
Confidence 0 011111111111 56666677766554 36999999999999999999998
Q ss_pred HhhCCCCceEEEECCCCCccceehhh
Q 017078 320 SALAPSSMKIKVVAPPERKYSVWIGG 345 (377)
Q Consensus 320 ~~~~~~~~~v~v~~~~~~~~~~w~Ga 345 (377)
...|+.|..|.|-.=+|-
T Consensus 251 --------~l~v~~P~~p~y~TPLgI 268 (277)
T COG4820 251 --------ALQVHLPQHPLYMTPLGI 268 (277)
T ss_pred --------ccccccCCCcceechhhh
Confidence 335666656666555553
No 47
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.31 E-value=1.2e-10 Score=110.35 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=107.8
Q ss_pred ChHHHHhhhhhcccccCCCeEEeecchhhhhhcc----------C-Cc-eEEEEeCCCCceEEEEeeCCeecccceEEec
Q 017078 114 PKANREKMTQIMFETFNAPAMYVAIQAVLSLYAS----------G-RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g-~~-~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~ 181 (377)
++...+.+.+.+ +..|+.-..+..+++|.+-+. . .. +.++||||+++|+++.+.+|.++ ....++
T Consensus 141 ~~~~v~~~~~~~-~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHAL-KLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREVP 217 (348)
T ss_pred cHHHHHHHHHHH-HHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEee
Confidence 677778787775 889999888888888764332 1 12 48999999999999999999998 778999
Q ss_pred ccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcCCCcEEeeCCccccccc
Q 017078 182 LAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPE 261 (377)
Q Consensus 182 ~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E 261 (377)
+||.++++.+.+.+. . +.+.++++|.+.++... ... ...+
T Consensus 218 ~G~~~i~~~i~~~~~---~------~~~~Ae~~k~~~~~~~~-~~~------------------------------~~~~ 257 (348)
T TIGR01175 218 FGTRQLTSELSRAYG---L------NPEEAGEAKQQGGLPLL-YDP------------------------------EVLR 257 (348)
T ss_pred chHHHHHHHHHHHcC---C------CHHHHHHHHhcCCCCCc-hhH------------------------------HHHH
Confidence 999999999876652 2 34568888876653211 000 0000
Q ss_pred ccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHH
Q 017078 262 VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIS 320 (377)
Q Consensus 262 ~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~ 320 (377)
..+. .+..-|.++++-+.........+.|+||||++.++||.+.|+++|.
T Consensus 258 ~~~~---------~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 258 RFKG---------ELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHH---------HHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 1111 1444455555443222223346789999999999999999999994
No 48
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.26 E-value=2e-10 Score=108.02 Aligned_cols=186 Identities=13% Similarity=0.162 Sum_probs=107.6
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCC-cc------------ccCCCcc---eeeccccccccCcceee
Q 017078 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-VM------------VGMGQKD---AYVGDEAQSKRGILTLK 70 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~-~~------------~~~~~~~---~~vg~~~~~~~~~~~~~ 70 (377)
+.++.||+|-.+||.-.... ...+|+.++...... .. ...++.. +++|+++...... ..
T Consensus 2 ~~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~--~~ 76 (344)
T PRK13917 2 VYVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNT--GK 76 (344)
T ss_pred ceEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccc--cC
Confidence 46789999999999866522 234566654332111 00 1112233 6777775221110 00
Q ss_pred cccc-CCccCCHHHHHHHHHHHhccccCCC--CCCCcEEE--eeCCCCChHH-HHhhhhhcccc-----------cCCCe
Q 017078 71 YPIE-HGIVSNWDDMEKIWHHTFYNELRVA--PEEHPVLL--TEAPLNPKAN-REKMTQIMFET-----------FNAPA 133 (377)
Q Consensus 71 ~p~~-~g~i~~~~~~~~~~~~~~~~~L~~~--~~~~~vvl--~~~~~~~~~~-~~~l~~~lfe~-----------~~~~~ 133 (377)
.+.. ++.. .-+..+.++..++...+... .+...++| -.|...-... ++.+.+.+-.. ..+..
T Consensus 77 ~~~~~~~~y-~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~ 155 (344)
T PRK13917 77 DTYSTNDRY-DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKG 155 (344)
T ss_pred Ccccccccc-cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEE
Confidence 1111 1111 12345666555542222111 11223333 3454432222 24444433111 45678
Q ss_pred EEeecchhhhhhccCC-------------ceEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhc
Q 017078 134 MYVAIQAVLSLYASGR-------------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTER 198 (377)
Q Consensus 134 v~~~~~~~~a~~~~g~-------------~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 198 (377)
|.++|+|++|.+.... ...+|||||+.+|+++.+.++.+........+.|..++.+.+.+.+..+
T Consensus 156 V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 233 (344)
T PRK13917 156 VKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK 233 (344)
T ss_pred EEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence 9999999998865422 3569999999999999999999988777789999999999999999543
No 49
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.20 E-value=4.4e-10 Score=105.94 Aligned_cols=194 Identities=20% Similarity=0.308 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHhccccCCCCCC-----------------CcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhh
Q 017078 80 NWDDMEKIWHHTFYNELRVAPEE-----------------HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVL 142 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~L~~~~~~-----------------~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~ 142 (377)
+.+.++..+++=..+.+..+.++ ..|+++. .++...+.+++++ +.+|..-..+--++.|
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A---a~k~~v~~~~~~~-~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA---APKEIVESYVELF-EEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEE---EEHHHHHHHHHHH-HHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEE---EcHHHHHHHHHHH-HHcCCceEEEeehHHH
Confidence 44667777777666666654332 2244332 2566677777666 7788876666555444
Q ss_pred --hhhcc---------CCceEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCCCccchhHHHHH
Q 017078 143 --SLYAS---------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGYSFTTTAEREIV 211 (377)
Q Consensus 143 --a~~~~---------g~~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~ 211 (377)
-++.. ...+.++||||++.|.++.+.+|.++ ..+.+++||+++++.+.+.+. .+.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~~---------i~~~~A 230 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIARELG---------IDFEEA 230 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHTT-----------HHHH
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhcC---------CCHHHH
Confidence 23322 12356999999999999999999998 778999999999999987762 244567
Q ss_pred HHHhHhccccccCHHHHHhhccCCCCccceEEcCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhH
Q 017078 212 RDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDI 291 (377)
Q Consensus 212 ~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~ 291 (377)
+++|.+... ..+... .+-+.+++. |..-|.++++-+-...
T Consensus 231 e~~k~~~~l-~~~~~~------------------------------~~l~~~~~~---------l~~EI~rsl~~y~~~~ 270 (340)
T PF11104_consen 231 EELKRSGGL-PEEYDQ------------------------------DALRPFLEE---------LAREIRRSLDFYQSQS 270 (340)
T ss_dssp HHHHHHT-------HH------------------------------HHHHHHHHH---------HHHHHHHHHHHHHHH-
T ss_pred HHHHhcCCC-CcchHH------------------------------HHHHHHHHH---------HHHHHHHHHHHHHhcC
Confidence 777765432 111100 000111111 5566666666554444
Q ss_pred HHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECC
Q 017078 292 RKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP 334 (377)
Q Consensus 292 ~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~ 334 (377)
...-++.|+||||+|+++||.+.|.++| +.++.+..|
T Consensus 271 ~~~~i~~I~L~Ggga~l~gL~~~l~~~l------~~~v~~~~p 307 (340)
T PF11104_consen 271 GGESIERIYLSGGGARLPGLAEYLSEEL------GIPVEVINP 307 (340)
T ss_dssp -----SEEEEESGGGGSTTHHHHHHHHH------TSEEEE--G
T ss_pred CCCCCCEEEEECCccchhhHHHHHHHHH------CCceEEcCh
Confidence 4556788999999999999999999999 445555543
No 50
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.18 E-value=6.1e-10 Score=103.96 Aligned_cols=183 Identities=12% Similarity=0.057 Sum_probs=114.3
Q ss_pred EeCCCCceEEeeeCC-CCC-CCCCCceeEeeCCCC------------ccccCCCcceeeccccccccCcceeeccccCCc
Q 017078 12 CDNGTGMVKAGFAGD-DAP-RAVFPSIVGRPRHTG------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 77 (377)
Q Consensus 12 iD~Gs~~~k~G~~~~-~~P-~~~~ps~~~~~~~~~------------~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~ 77 (377)
||+|-.++|+-+... ..+ ...+||.++...... .....++..++||+.+..... ....+.+.+..
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~-~~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAAD-TNRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhccc-Cccceeccccc
Confidence 799999999876532 232 346787764432111 011134566778876632211 01112222222
Q ss_pred cCCHHHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccc--------cCCCeEEeecchhhhhhcc--
Q 017078 78 VSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET--------FNAPAMYVAIQAVLSLYAS-- 147 (377)
Q Consensus 78 i~~~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~--------~~~~~v~~~~~~~~a~~~~-- 147 (377)
..+ +....++.+++.. .... ....+++-.|...-..+++.+.+.+-.. ..+..|.++|+|+.|.+..
T Consensus 81 ~~~-~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 TET-PEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred cCC-HHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 222 3455555555522 2221 1223555566665566777777766432 4678899999999887643
Q ss_pred -------CCceEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhc
Q 017078 148 -------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTER 198 (377)
Q Consensus 148 -------g~~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 198 (377)
...+.+|||||+.+|+++.+.++.+......+.+.|...+.+.+.+.+.++
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 235679999999999999988888887777788999999999999998654
No 51
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.7e-10 Score=112.51 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=78.2
Q ss_pred CCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC----------ceEEEEeCCCCceEEEEeeCCe
Q 017078 102 EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~i~pv~~g~ 171 (377)
-..+|+++|+++.+.+|..+++.. ..+|.+.++++++..++|+.+|. +.-++.|+|+++|.++.|.--.
T Consensus 158 Ikd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~ 236 (902)
T KOG0104|consen 158 IKDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQL 236 (902)
T ss_pred hhheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEe
Confidence 457999999999999999999998 88999999999999999999984 4689999999999999884322
Q ss_pred eccc-------------ceEEecccHHHHHHHHHHHHHh
Q 017078 172 ALPH-------------AILRLDLAGRDLTDHLMKILTE 197 (377)
Q Consensus 172 ~~~~-------------~~~~~~~GG~~i~~~l~~~l~~ 197 (377)
+-.. .--...+||..++..|+.+|..
T Consensus 237 v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 237 VKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred eccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 2111 1113478999999999999864
No 52
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-08 Score=99.47 Aligned_cols=97 Identities=11% Similarity=0.159 Sum_probs=79.4
Q ss_pred CCCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCC------------ceEEEEeCCCCceEEEEe-
Q 017078 101 EEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPI- 167 (377)
Q Consensus 101 ~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~i~pv- 167 (377)
.-.++++.+|.++...+|..+++++ ...|++-+.++++..|+++++|. .+-..||+||+.++++..
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 3467999999999999999999999 88999999999999999999984 357899999999877655
Q ss_pred -eCCee-cccceEEecccHHHHHHHHHHHHHhc
Q 017078 168 -YEGYA-LPHAILRLDLAGRDLTDHLMKILTER 198 (377)
Q Consensus 168 -~~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~ 198 (377)
-.|.. +..+...-.+||+++++.|.+++...
T Consensus 215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred eccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 34432 22333455899999999999998653
No 53
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=2.4e-08 Score=89.63 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=93.7
Q ss_pred hhcccccCCCeEEeecchhhhhhcc-------C-Cc---eEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHHHHH
Q 017078 123 QIMFETFNAPAMYVAIQAVLSLYAS-------G-RT---TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHL 191 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~-------g-~~---~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l 191 (377)
.-.|+..|.....+--+..+..-++ + .. ..+|+|||++.|.++.+.+|+++ ..+..++||+.++..+
T Consensus 155 i~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~l--y~r~~~~g~~Qlt~~i 232 (354)
T COG4972 155 IDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKIL--YTREVPVGTDQLTQEI 232 (354)
T ss_pred HHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeee--eEeeccCcHHHHHHHH
Confidence 3445666766554444444332111 1 12 24699999999999999999999 7799999999999998
Q ss_pred HHHHHhcCCCccchhHHHHHHHHhHhccccccCHHHHHhhccCCCCccceEEcCCCcEEeeCCcccccccccCCCccCCC
Q 017078 192 MKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGM 271 (377)
Q Consensus 192 ~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~ 271 (377)
.+... .+...++++|.....- .++..+. + .|
T Consensus 233 ~r~~~---------L~~~~a~~~k~~~~~P-~~y~~~v---------------------------------l-~~----- 263 (354)
T COG4972 233 QRAYS---------LTEEKAEEIKRGGTLP-TDYGSEV---------------------------------L-RP----- 263 (354)
T ss_pred HHHhC---------CChhHhHHHHhCCCCC-CchhHHH---------------------------------H-HH-----
Confidence 87762 1334577777665532 1222111 0 00
Q ss_pred cCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHH
Q 017078 272 EAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIS 320 (377)
Q Consensus 272 ~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~ 320 (377)
....|.+-|.++|+-+-.---..-++.|+|.||++.+.|+.+.+++.|+
T Consensus 264 f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 264 FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 0011555666666543111122335689999999999999999999984
No 54
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.2e-08 Score=93.78 Aligned_cols=211 Identities=18% Similarity=0.256 Sum_probs=128.7
Q ss_pred CcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecchhhhhhccCCc-----eEEEEeCCCCceEEE--EeeCCee-cc
Q 017078 103 HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTV--PIYEGYA-LP 174 (377)
Q Consensus 103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~i~--pv~~g~~-~~ 174 (377)
...++++|.+++..+|+..-... .-++.+.+..+++|.+|++++|.. .-.|.|+|+++.+|. -+.+|.- +.
T Consensus 161 ~~avvtvpAyfndsqRqaTkdag-~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDAG-QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhhh-hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 46899999999999998555444 888999999999999999999863 568999999986665 4577743 33
Q ss_pred cceEEecccHHHHHHHHHHHHHhc-----CCCccchhHHHHHHHHhH-------hccccccCHHHHHhhccCCCCccceE
Q 017078 175 HAILRLDLAGRDLTDHLMKILTER-----GYSFTTTAEREIVRDMKE-------KLAYIALDYEQELETSKTSSAVEKSY 242 (377)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~~~~~~~ik~-------~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
........||.+++..+.+++-.. +.++. .+...+..+++ .++.... .+...+|
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~--kd~~a~qrl~eaaEkaKielSs~~~------------tei~lp~ 305 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLT--KDRMALQRLREAAEKAKIELSSRQQ------------TEINLPF 305 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchh--hhHHHHHHHHHHHHhhhhhhhhccc------------ceeccce
Confidence 344567899999999999887431 22222 22233333332 2221110 1112233
Q ss_pred EcCCC---cEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHH-----HhhcCceeccCCCCCCChHHH
Q 017078 243 ELPDG---QVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADR 314 (377)
Q Consensus 243 ~lpd~---~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~-----~l~~nIvl~GG~s~i~g~~~r 314 (377)
...|. +-+.+...|-.+.|. +..+|.+.|.-|-.++|. .-++.|+++||.+++|-..+.
T Consensus 306 iTada~gpkh~~i~~tr~efe~~-------------v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~ 372 (640)
T KOG0102|consen 306 ITADASGPKHLNIELTRGEFEEL-------------VPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQST 372 (640)
T ss_pred eeccCCCCeeEEEeecHHHHHHh-------------hHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHH
Confidence 33232 334444444444333 456666666655444443 445679999999999965555
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccceehhhHHhh
Q 017078 315 MSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
+++-+ ..-|. ...+|+-++-.||++-+
T Consensus 373 V~e~f-gk~p~-------~~vnPdeava~GAaiqg 399 (640)
T KOG0102|consen 373 VKELF-GKGPS-------KGVNPDEAVAGGAAIQG 399 (640)
T ss_pred HHHHh-CCCCC-------CCcCCcchhccchhhcc
Confidence 55333 22221 12245666666666544
No 55
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.59 E-value=3.2e-07 Score=85.57 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=51.2
Q ss_pred ccCCCeEEeecchhhhhhcc-----CCceEEEEeCCCCceEEEEeeCCeecc-cceEEecccHHHHHHHHHHHHHh
Q 017078 128 TFNAPAMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALP-HAILRLDLAGRDLTDHLMKILTE 197 (377)
Q Consensus 128 ~~~~~~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~i~pv~~g~~~~-~~~~~~~~GG~~i~~~l~~~l~~ 197 (377)
.+.+..|.+.|++++|.|.. .....+|||||+.+|+++.|.++.+.. .+....++|-..+.+.+.+.|..
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 34477999999999998864 236799999999999999998765543 33445688999999999988865
No 56
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.45 E-value=7.1e-06 Score=73.82 Aligned_cols=43 Identities=30% Similarity=0.611 Sum_probs=35.9
Q ss_pred CceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHh
Q 017078 298 NIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
.|+++||.++.+++.+.|.+.| ...+..++++.+..-+||+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~l--------g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKL--------GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHh--------CCcEEcCCCccHHHHHHHHhC
Confidence 7999999999999999999888 235566777888889998863
No 57
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.26 E-value=2.9e-06 Score=79.67 Aligned_cols=48 Identities=27% Similarity=0.557 Sum_probs=40.6
Q ss_pred hhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhc
Q 017078 295 LYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 295 l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+-+.|+++||.++.+|+.+.|.+.|. .++.-|++|++...+||+++|+
T Consensus 355 i~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 355 VREPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 33559999999999999999998883 3566688999999999999984
No 58
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.21 E-value=8.6e-06 Score=77.67 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=97.2
Q ss_pred CCCCcEEEeCCCCceEEeeeC----CCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCC
Q 017078 5 EDIQPLVCDNGTGMVKAGFAG----DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN 80 (377)
Q Consensus 5 ~~~~~vviD~Gs~~~k~G~~~----~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~ 80 (377)
++-..|.||+||+||.+=|+. +..+.+.+|...-- ++++++-.+ -..-|+......|
T Consensus 4 ~~i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~-----------dkev~yrS~--------i~fTPl~~~~~ID 64 (475)
T PRK10719 4 EELLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEII-----------DKEIIYRSP--------IYFTPLLKQGEID 64 (475)
T ss_pred cEEEEEEEeccCceEEEEEEEEEEecccccccCceEEEe-----------eeEEEEecC--------ceecCCCCCcccc
Confidence 667789999999999998884 22333333332111 111111111 1345887777889
Q ss_pred HHHHHHHHHHHhccccCCCCC--CCcEEEeeCCCCChHHHHhhhhhccc--------ccC--CCeEEeecchhhhhhcc-
Q 017078 81 WDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFE--------TFN--APAMYVAIQAVLSLYAS- 147 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~L~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe--------~~~--~~~v~~~~~~~~a~~~~- 147 (377)
-+.++++++.=| +.-++.++ +..+.++.-........++.++.+-. ..| +.++ + .+++++.+.
T Consensus 65 ~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~i--v-a~~ASg~avL 140 (475)
T PRK10719 65 EAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESI--I-AGKGAGAQTL 140 (475)
T ss_pred HHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHh--h-hHHHhhHHHh
Confidence 999999999987 77777765 33344443333333333333332110 011 1121 1 133333222
Q ss_pred --C-CceEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHHHH
Q 017078 148 --G-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDH 190 (377)
Q Consensus 148 --g-~~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~ 190 (377)
- ....++||||+++|+++.+.+|.++ +...+++||++++..
T Consensus 141 seEke~gVa~IDIGgGTT~iaVf~~G~l~--~T~~l~vGG~~IT~D 184 (475)
T PRK10719 141 SEERNTRVLNIDIGGGTANYALFDAGKVI--DTACLNVGGRLIETD 184 (475)
T ss_pred hhhccCceEEEEeCCCceEEEEEECCEEE--EEEEEecccceEEEC
Confidence 1 2578999999999999999999998 778899999987764
No 59
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.19 E-value=1.4e-05 Score=72.35 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=39.5
Q ss_pred hhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEE-CCCCCccceehhhHHhhc
Q 017078 295 LYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVV-APPERKYSVWIGGSILAS 350 (377)
Q Consensus 295 l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~-~~~~~~~~~w~Gasi~a~ 350 (377)
+-..|+++||.++.+|+.+.|+++|.. ++. .+++|++...+||+++|.
T Consensus 239 i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 239 VEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence 446799999999999999999998832 333 366799999999999983
No 60
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.15 E-value=0.0001 Score=67.86 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=39.8
Q ss_pred ceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhc
Q 017078 299 IVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 299 Ivl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
||++||++...++.+.+.+.| ..+|..||+|++.-..||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHh
Confidence 999999999999999999888 45788899999999999999885
No 61
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.09 E-value=2.9e-05 Score=69.30 Aligned_cols=50 Identities=20% Similarity=0.447 Sum_probs=40.8
Q ss_pred cCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhh
Q 017078 297 GNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
++|+++||.++-+++.+.|+++|... ...+.+..+++|++...+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999998532 124556667889999999999875
No 62
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.36 E-value=0.0018 Score=62.15 Aligned_cols=173 Identities=18% Similarity=0.251 Sum_probs=109.6
Q ss_pred CCcEEEeCCCCceEEeeeC---C-CCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCHH
Q 017078 7 IQPLVCDNGTGMVKAGFAG---D-DAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~---~-~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~ 82 (377)
...|.||+||+||.+=|+. + ..+.+.+|...-. ++.+.+- . .-..-|+.+....|-+
T Consensus 3 i~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~-----------dkeViYr------S--~I~fTPl~~~~~ID~~ 63 (473)
T PF06277_consen 3 ILSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIV-----------DKEVIYR------S--PIYFTPLLSQTEIDAE 63 (473)
T ss_pred eEEEEEeecCCceeEEEEEeEEEeccCCCccceEEEe-----------ccEEEec------C--CccccCCCCCCccCHH
Confidence 4569999999999988885 2 2333444433211 1111111 0 0124588888888999
Q ss_pred HHHHHHHHHhccccCCCCCC--Cc-EEEeeCCCCChHHHHhhhhhcccccCCCeEEe---ecchhhhhhccCC-------
Q 017078 83 DMEKIWHHTFYNELRVAPEE--HP-VLLTEAPLNPKANREKMTQIMFETFNAPAMYV---AIQAVLSLYASGR------- 149 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~--~~-vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g~------- 149 (377)
+++++++.-| +.-++.+++ .- |++|-... .++.-+.+++.|-+.+|==.|.- --+++.|..++|.
T Consensus 64 al~~iv~~eY-~~Agi~p~~I~TGAVIITGETA-rKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~ 141 (473)
T PF06277_consen 64 ALKEIVEEEY-RKAGITPEDIDTGAVIITGETA-RKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEH 141 (473)
T ss_pred HHHHHHHHHH-HHcCCCHHHCccccEEEecchh-hhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhh
Confidence 9999999997 778887753 33 55554333 44444556655545444211111 1266677777662
Q ss_pred -ceEEEEeCCCCceEEEEeeCCeecccceEEecccHH-----------HHHHHHHHHHHhcCCCc
Q 017078 150 -TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR-----------DLTDHLMKILTERGYSF 202 (377)
Q Consensus 150 -~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~-----------~i~~~l~~~l~~~~~~~ 202 (377)
..-+=+|||+++|.++.+.+|.++ ...-+++||+ .+...++.++.+.+.+.
T Consensus 142 ~~~V~NiDIGGGTtN~avf~~G~v~--~T~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 142 HTVVANIDIGGGTTNIAVFDNGEVI--DTACLDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred CCeEEEEEeCCCceeEEEEECCEEE--EEEEEeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 355668999999999999999999 6667899997 34555666666665543
No 63
>PRK13317 pantothenate kinase; Provisional
Probab=97.32 E-value=0.0067 Score=55.23 Aligned_cols=71 Identities=21% Similarity=0.184 Sum_probs=48.7
Q ss_pred CHHHHHHHHHhcCChh-HHHHhhcCceecc-CCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhc
Q 017078 275 GIHETTYNSIMKCDVD-IRKDLYGNIVLSG-GSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 275 ~l~~~I~~~i~~~~~~-~~~~l~~nIvl~G-G~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+|...|.+.|..+..- .|..-.++|+++| |.++.|++.++|.+.++-. ..++.-+++|++...+||++++.
T Consensus 201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-----~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLR-----NCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcC-----CceEEecCCCchhHHHHHHHHhh
Confidence 4444444444433211 1333447999999 7999999999999877431 24666688899999999998874
No 64
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.27 E-value=0.0044 Score=58.16 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=42.4
Q ss_pred hhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhh
Q 017078 295 LYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 295 l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
+-..|+++||.++-+|+.+.|.+.|....+ ..+|..+++|++...+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 346899999999999999999998865432 2356668899999999999875
No 65
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.19 E-value=0.0051 Score=56.08 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=34.5
Q ss_pred ceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhh
Q 017078 299 IVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 299 Ivl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|+++||..+.+.+.+.|++.|.+..+.. .+..+.+|.+.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999999988777777766665554432 23344567899999999886
No 66
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=96.06 E-value=0.019 Score=51.13 Aligned_cols=208 Identities=16% Similarity=0.170 Sum_probs=108.5
Q ss_pred hHHHHhhhhhcccccCCCeEEeecchhhhhhccCCc-----eEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHHH
Q 017078 115 KANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189 (377)
Q Consensus 115 ~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~ 189 (377)
+..-+.+.+.+-++++++.-.---++-+|..++-.+ --.|+|+|+++|+.+.+-..-.+ ....+.=.|+.++.
T Consensus 94 ~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v--~~iHlAGAG~mVTm 171 (332)
T PF08841_consen 94 KLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV--TAIHLAGAGNMVTM 171 (332)
T ss_dssp S-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E--EEEEEE-SHHHHHH
T ss_pred cccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE--EEEEecCCchhhHH
Confidence 334456777777888999888888888888876432 45788999999999887554444 23344557889998
Q ss_pred HHHHHHHhcCCCccchhHHHHHHHHhHhc-cccccCHHHH--------HhhccCCCCccceEEcCCCcEEeeCC------
Q 017078 190 HLMKILTERGYSFTTTAEREIVRDMKEKL-AYIALDYEQE--------LETSKTSSAVEKSYELPDGQVITIGA------ 254 (377)
Q Consensus 190 ~l~~~l~~~~~~~~~~~~~~~~~~ik~~~-~~v~~~~~~~--------~~~~~~~~~~~~~~~lpd~~~i~i~~------ 254 (377)
.+..-|- -.+.+++|++|+.- +.|-.-+.-. .++-..+..+.+...+.++..+.++.
T Consensus 172 lI~sELG--------l~d~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~lEk 243 (332)
T PF08841_consen 172 LINSELG--------LEDRELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSLEK 243 (332)
T ss_dssp HHHHHCT---------S-HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-HHH
T ss_pred HHHHhhC--------CCCHHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccHHH
Confidence 8887662 23678899998743 2221110000 00000111222333333333333321
Q ss_pred ---cccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEE
Q 017078 255 ---ERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKV 331 (377)
Q Consensus 255 ---~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v 331 (377)
.|..+.+-. ...-..+++.+..+.-.-..+..++|+||++.=--+-+-+..+|+++--.--+=++
T Consensus 244 ir~vRr~AK~kV------------FVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNI 311 (332)
T PF08841_consen 244 IRSVRREAKEKV------------FVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNI 311 (332)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--G
T ss_pred HHHHHHHhhhhh------------hHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeecccc
Confidence 011111111 12223455555533212223456999999998777778888888765311001112
Q ss_pred ECCCCCccceehh
Q 017078 332 VAPPERKYSVWIG 344 (377)
Q Consensus 332 ~~~~~~~~~~w~G 344 (377)
-...-|..++..|
T Consensus 312 rG~eGPRNAVATG 324 (332)
T PF08841_consen 312 RGVEGPRNAVATG 324 (332)
T ss_dssp GGTSTTSTHHHHH
T ss_pred ccccCchHHHHHH
Confidence 2223456666665
No 67
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.74 E-value=0.062 Score=53.37 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=53.8
Q ss_pred EEeeCCCCChHHHHhhhhhcccccCCC--eEEeecchhhhhhcc-----CCceEEEEeCCCCceEEEEeeCCeecccceE
Q 017078 106 LLTEAPLNPKANREKMTQIMFETFNAP--AMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178 (377)
Q Consensus 106 vl~~~~~~~~~~~~~l~~~lfe~~~~~--~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~i~pv~~g~~~~~~~~ 178 (377)
++.....-....++.+++.+.+..|++ .+.=-.++-+..++. ...+++|+|||+++|.++.+.+|.+. ...
T Consensus 81 ~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~ 158 (496)
T PRK11031 81 VVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SLF 158 (496)
T ss_pred EEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--eee
Confidence 333344445566677777777777765 222223333322211 12358999999999999999999887 667
Q ss_pred EecccHHHHHHH
Q 017078 179 RLDLAGRDLTDH 190 (377)
Q Consensus 179 ~~~~GG~~i~~~ 190 (377)
.+|+|.-.+++.
T Consensus 159 Sl~lG~vrl~e~ 170 (496)
T PRK11031 159 SLSMGCVTWLER 170 (496)
T ss_pred EEeccchHHHHH
Confidence 899998776544
No 68
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.59 E-value=0.045 Score=50.67 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=54.0
Q ss_pred EEeeCCCCChHHHHhhhhhcccccCCCeEEeec---chhhhhhc----cCCceEEEEeCCCCceEEEEeeCCeecccceE
Q 017078 106 LLTEAPLNPKANREKMTQIMFETFNAPAMYVAI---QAVLSLYA----SGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178 (377)
Q Consensus 106 vl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~----~g~~~~lVVDiG~~~t~i~pv~~g~~~~~~~~ 178 (377)
++....+-....++.+++.+.+..|++ +.++. ++.+...+ ....+++++|+|+++|.++.+.++.+. ...
T Consensus 75 ~vaTsa~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~ 151 (300)
T TIGR03706 75 AVATAALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGV 151 (300)
T ss_pred EEEcHHHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEE
Confidence 333344434456667777776766654 23443 33332221 122457999999999999999888877 667
Q ss_pred EecccHHHHHHHH
Q 017078 179 RLDLAGRDLTDHL 191 (377)
Q Consensus 179 ~~~~GG~~i~~~l 191 (377)
.+|+|.-.+++.+
T Consensus 152 Sl~lG~vrl~e~f 164 (300)
T TIGR03706 152 SLPLGCVRLTEQF 164 (300)
T ss_pred EEccceEEhHHhh
Confidence 8999987777664
No 69
>PRK10854 exopolyphosphatase; Provisional
Probab=95.02 E-value=0.072 Score=53.17 Aligned_cols=83 Identities=12% Similarity=0.087 Sum_probs=51.4
Q ss_pred EEeeCCCCChHHHHhhhhhcccccCCCe--EEeecchhhhhhcc-----CCceEEEEeCCCCceEEEEeeCCeecccceE
Q 017078 106 LLTEAPLNPKANREKMTQIMFETFNAPA--MYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178 (377)
Q Consensus 106 vl~~~~~~~~~~~~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~i~pv~~g~~~~~~~~ 178 (377)
++....+-....+..+++.+.+..|++- +.=-.++-+..++. ...+++|||||+++|.++.+-+|.+. ...
T Consensus 86 ~vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~ 163 (513)
T PRK10854 86 IVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVE 163 (513)
T ss_pred EEehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee--EeE
Confidence 3333444455566777777777777653 22222333222211 12468999999999999999998766 445
Q ss_pred EecccHHHHHHH
Q 017078 179 RLDLAGRDLTDH 190 (377)
Q Consensus 179 ~~~~GG~~i~~~ 190 (377)
..|+|.-.+++.
T Consensus 164 S~~lG~vrl~e~ 175 (513)
T PRK10854 164 SRRMGCVSFAQL 175 (513)
T ss_pred EEecceeeHHhh
Confidence 668887666553
No 70
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=94.89 E-value=1.4 Score=40.92 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=39.0
Q ss_pred hhhhcccccCCCeEEeecchhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeeccc
Q 017078 121 MTQIMFETFNAPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~i~pv~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+.++.-+++++. +..+.++|.+|.+ +-...|.+|.++..
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtG-iG~giv~~G~~~~G 148 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTG-LGGGIIINGEIRHG 148 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCc-cEEEEEECCEEeec
Confidence 445555677887 77889888887732 4578999999976 47777889987753
No 71
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=94.84 E-value=0.2 Score=46.45 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=25.3
Q ss_pred cCCceEEEEeCCCCceEEEEeeCCeecc
Q 017078 147 SGRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 147 ~g~~~~lVVDiG~~~t~i~pv~~g~~~~ 174 (377)
....+++.+|+|+++|+|+||.+|.+..
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~ 152 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAA 152 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeee
Confidence 4468999999999999999999999874
No 72
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.54 E-value=0.067 Score=52.61 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=49.1
Q ss_pred ChHHHHhhhhhcccccCCCe--EEeecchhhhhhc----cC-CceEEEEeCCCCceEEEEeeCCeecccceEEecccHHH
Q 017078 114 PKANREKMTQIMFETFNAPA--MYVAIQAVLSLYA----SG-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 186 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~--v~~~~~~~~a~~~----~g-~~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~ 186 (377)
.-...+.+++.+-+.+|++. +.=-.++-.+.++ .+ ...++|+|||+++|.++-+-+..+. ....+|+|.-.
T Consensus 86 ~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~ 163 (492)
T COG0248 86 DAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVR 163 (492)
T ss_pred cCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEE
Confidence 34445556666666667652 2223344433332 23 5789999999999999998877776 56778888655
Q ss_pred HHHHH
Q 017078 187 LTDHL 191 (377)
Q Consensus 187 i~~~l 191 (377)
+++.+
T Consensus 164 lt~~~ 168 (492)
T COG0248 164 LTERF 168 (492)
T ss_pred eehhh
Confidence 55443
No 73
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=94.44 E-value=0.41 Score=43.55 Aligned_cols=68 Identities=16% Similarity=0.025 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhcCCh-hHHHHhhcCceeccC-CCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHH
Q 017078 275 GIHETTYNSIMKCDV-DIRKDLYGNIVLSGG-STMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 275 ~l~~~I~~~i~~~~~-~~~~~l~~nIvl~GG-~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
+|..+|.+.|..+.. --+..-.++|+++|| .+..|.+.+++..-+.- +..++.-+.+..+...+||.+
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-----~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-----WSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhh-----cCceEEEECCcchHHHhhhcc
Confidence 455555555543321 113444788999999 77899999988876642 225666666777888888764
No 74
>PRK09557 fructokinase; Reviewed
Probab=94.43 E-value=2.3 Score=39.19 Aligned_cols=53 Identities=13% Similarity=0.023 Sum_probs=36.7
Q ss_pred hhhhcccccCCCeEEeecchhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeeccc
Q 017078 121 MTQIMFETFNAPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~i~pv~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+.++.-|++++. +..+.+.+.+| +.+-...|.||.++..
T Consensus 88 l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ig-tGiG~giv~~G~l~~G 147 (301)
T PRK09557 88 LDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIG-TGCGAGVAINGRVHIG 147 (301)
T ss_pred HHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEc-cceEEEEEECCEEEec
Confidence 334444566887 67889888887653 23577788887 4477777889987653
No 75
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.21 E-value=0.22 Score=39.26 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=42.1
Q ss_pred EEEeCCCCceEEEEeeCCeecccceEEeccc--------HHHHH--HHHHHHHHhcCCCccchhHHHHHHHH-hHhcccc
Q 017078 153 IVLDSGDGVSHTVPIYEGYALPHAILRLDLA--------GRDLT--DHLMKILTERGYSFTTTAEREIVRDM-KEKLAYI 221 (377)
Q Consensus 153 lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~G--------G~~i~--~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~~~~v 221 (377)
++||||++.|.++...++... ....+++| +.+++ +.+.+.++. ..+.+|++ |.++..+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~--~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDG--YIRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEE--EEEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCC--cEEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 689999999999999988776 57789999 99999 888887742 34558887 7776654
No 76
>PRK03011 butyrate kinase; Provisional
Probab=94.15 E-value=3 Score=39.53 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=33.4
Q ss_pred hcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHH
Q 017078 296 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
.+-|||+||.+.-+-|.+++++.+..+. ++.+....+-..+...||..
T Consensus 296 pD~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 296 VDAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHHHHH
Confidence 3569999999987777788887777653 46776665554555566543
No 77
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=92.84 E-value=0.092 Score=48.30 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=23.4
Q ss_pred hhh-ccCCceEEEEeCCCCceEEEEeeCCeec
Q 017078 143 SLY-ASGRTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 143 a~~-~~g~~~~lVVDiG~~~t~i~pv~~g~~~ 173 (377)
+++ ..+..+++++|+|+++|+|++|.||.+.
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~ 100 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPE 100 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE-
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeee
Confidence 444 5688999999999999999999999996
No 78
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=92.15 E-value=1 Score=41.41 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=83.8
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCC----CCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccC
Q 017078 4 GEDIQPLVCDNGTGMVKAGFAGDDA----PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVS 79 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~----P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~ 79 (377)
.++...|.||+|+++|.+=|+.-+. .....|......+ +..+ ++ .-+..|+....-.
T Consensus 2 te~ilSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~k-----------di~~-------rS-~i~FTPv~~q~~i 62 (473)
T COG4819 2 TEQILSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKK-----------DISW-------RS-PIFFTPVDKQGGI 62 (473)
T ss_pred cceeeeeeeeccCceeeeeeeeeEEeecccccccceEEEEec-----------ceee-------ec-ceeeeeecccCCc
Confidence 4567789999999999998885321 1111121111111 1000 11 1233466555555
Q ss_pred CHHHHHHHHHHHhccccCCCCCC---CcEEEeeCCCCChHHHHhhhhhcccccCCCeEEe---ecchhhhhhccC-----
Q 017078 80 NWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYV---AIQAVLSLYASG----- 148 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~L~~~~~~---~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g----- 148 (377)
|.++++.+...=| ..-++.|+. -.++++-...-.+.-|. .+..+-..+|-=.|.- --+++.|.-++|
T Consensus 63 d~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~-vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~S 140 (473)
T COG4819 63 DEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARP-VLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 140 (473)
T ss_pred cHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchH-HHHHhhhcccceEEEecCCCHHHHhccCCccccchh
Confidence 7777888776665 556666542 34566644433333333 2222222222111111 112333333333
Q ss_pred --Cc-eEEEEeCCCCceEEEEeeCCeecccceEEecccHHH
Q 017078 149 --RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 186 (377)
Q Consensus 149 --~~-~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~ 186 (377)
+. .-+=+|||+++|..+-.-.|++. ...-+++||+-
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~Gkv~--dTaCLdiGGRL 179 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDAGKVS--DTACLDIGGRL 179 (473)
T ss_pred hhhceEEEEEeccCCccceeeecccccc--cceeeecCcEE
Confidence 22 23447999999999999889888 44557889874
No 79
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=91.62 E-value=0.22 Score=44.44 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=84.5
Q ss_pred ceEEEEeCCCCceEEEEeeCCeecccceEEe----cccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHhHhc------c
Q 017078 150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRL----DLAGRDLTDHLMKILTERGYSFTTTAEREIVRDMKEKL------A 219 (377)
Q Consensus 150 ~~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~----~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~------~ 219 (377)
-+-+.|.+|...|.++.|.+|+++..--.+. -+||-.++..+...|... ++++-+.. +
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~~------------~~~fsK~~lf~gGa~ 230 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALANY------------LERFSKSLLFEGGAA 230 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHHh------------hhhccHhheeccccc
Confidence 4668899999999999999999996544433 556666777776666422 11111111 1
Q ss_pred ccc-cCHHHHHh-hccCCCCccceEEcCCCcEEeeCCcccccccccCCCccCCCcCCCHHHHHHHHHhcCChhHHHHhhc
Q 017078 220 YIA-LDYEQELE-TSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYG 297 (377)
Q Consensus 220 ~v~-~~~~~~~~-~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~ 297 (377)
|+. .+..++.. ..+.... - |. + .-|.+.|.+.+...-.+.++.
T Consensus 231 ~i~gv~sp~ef~~~ake~en-l---------------------e~-~---------~~l~e~vvK~v~tllps~~pd--- 275 (374)
T COG2441 231 YIAGVDSPEEFVKLAKEDEN-L---------------------ET-Y---------NALIEGVVKDVFTLLPSTYPD--- 275 (374)
T ss_pred ccccCCCHHHHHHHhhcccc-h---------------------HH-H---------HHHHHHHHHHHHHhccccCcc---
Confidence 110 00001111 1110000 0 00 0 115666666666553333333
Q ss_pred CceeccCCCCCCChHHHHHHHHHhhCCC-Cc--eEEEECCCCCccceehhhHHhhcc
Q 017078 298 NIVLSGGSTMFPGIADRMSKEISALAPS-SM--KIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~-~~--~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
-|.++|-.+++|-|-.-+++.|+..+.. .. .++.....-..-.+..||+++|+-
T Consensus 276 ~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAna 332 (374)
T COG2441 276 AIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANA 332 (374)
T ss_pred eEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhh
Confidence 3999999999998887777777654432 11 233333222234477888888864
No 80
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=91.24 E-value=0.38 Score=44.11 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=53.2
Q ss_pred EeeCCCCChHHHHhhhhhcccccCCCeEEeec---chhhh----hhcc-CCceEEEEeCCCCceEEEEeeCCeecccceE
Q 017078 107 LTEAPLNPKANREKMTQIMFETFNAPAMYVAI---QAVLS----LYAS-GRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178 (377)
Q Consensus 107 l~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a----~~~~-g~~~~lVVDiG~~~t~i~pv~~g~~~~~~~~ 178 (377)
+....+-.-..+..+++.+.+..|++-- ++. ++.+. ..+. ...+++|+|+|+++|.++.+.+|.+. ...
T Consensus 62 vATsA~R~A~N~~~~~~~i~~~tGi~i~-iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~ 138 (285)
T PF02541_consen 62 VATSALREAKNSDEFLDRIKKETGIDIE-IISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV--FSQ 138 (285)
T ss_dssp EEEHHHHHSTTHHHHHHHHHHHHSS-EE-EE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE--EEE
T ss_pred EhhHHHHhCcCHHHHHHHHHHHhCCceE-EecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee--Eee
Confidence 3333333445556677777777776532 232 22222 1223 56789999999999999999999988 678
Q ss_pred EecccHHHHHHHH
Q 017078 179 RLDLAGRDLTDHL 191 (377)
Q Consensus 179 ~~~~GG~~i~~~l 191 (377)
.+|+|.-.+++.+
T Consensus 139 Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 139 SLPLGAVRLTERF 151 (285)
T ss_dssp EES--HHHHHHHH
T ss_pred eeehHHHHHHHHH
Confidence 8999987776665
No 81
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.49 E-value=1.2 Score=41.36 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=37.1
Q ss_pred CceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCC---CCccceehhhHHhhcc
Q 017078 298 NIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASL 351 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l 351 (377)
-|+|+|-.+.++.|.+.+...|...++- ++.... -..-.+..|++++|+-
T Consensus 263 ~IilSGr~~~~~~~~~~l~~~l~~~~~~----~v~~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 263 EIILSGRFSRIPEFRKKLEDRLEDYFPV----KVRKLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred EEEEeccccccHHHHHHHHHHHHhhccc----ceeecccccccchhhhhhHHHHhhh
Confidence 3999999999999999999999888762 332221 1123488999999863
No 82
>PRK13324 pantothenate kinase; Reviewed
Probab=87.40 E-value=5.5 Score=35.93 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.6
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017078 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~ 26 (377)
.+.||+|.+++|.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 478999999999998854
No 83
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=86.28 E-value=8.1 Score=34.56 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=16.2
Q ss_pred cEEEeCCCCceEEeeeCCC
Q 017078 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~ 27 (377)
-++||+|.++++.|+..+.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~ 20 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGG 20 (251)
T ss_pred eEEEEeCCCeEEEEEecCC
Confidence 3789999999999998743
No 84
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=85.78 E-value=0.55 Score=41.53 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCceEEEEeeCCee
Q 017078 149 RTTGIVLDSGDGVSHTVPIYEGYA 172 (377)
Q Consensus 149 ~~~~lVVDiG~~~t~i~pv~~g~~ 172 (377)
..+|+.||+|+++|+|+||.+|..
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge~ 152 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGEA 152 (330)
T ss_pred CCceEEEecCCcccceEeecchhh
Confidence 357999999999999999999973
No 85
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=85.33 E-value=5.4 Score=34.60 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.2
Q ss_pred EEEeCCCCceEEeeeCCC
Q 017078 10 LVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~ 27 (377)
++||+|-+++|+|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998665
No 86
>PRK13321 pantothenate kinase; Reviewed
Probab=85.27 E-value=6.4 Score=35.42 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.9
Q ss_pred EEEeCCCCceEEeeeCCC
Q 017078 10 LVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~ 27 (377)
+.||+|.+++|+|+..++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998644
No 87
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=82.44 E-value=2 Score=37.45 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=35.1
Q ss_pred ccCCceEEEEeCCCCceEEEEeeCCee-cccceEEecccHHHHHHHHHHHHHhcCC
Q 017078 146 ASGRTTGIVLDSGDGVSHTVPIYEGYA-LPHAILRLDLAGRDLTDHLMKILTERGY 200 (377)
Q Consensus 146 ~~g~~~~lVVDiG~~~t~i~pv~~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 200 (377)
-+|..+..|+-+-++.|+|+++.+.+- +.. .++++.=-.+...+.+.|.-.+.
T Consensus 120 iTgA~nPvvLYvSGGNTQvIAYse~rYrIFG--ETlDIAvGNClDRFAR~lklsN~ 173 (336)
T KOG2708|consen 120 ITGAQNPVVLYVSGGNTQVIAYSEKRYRIFG--ETLDIAVGNCLDRFARVLKLSND 173 (336)
T ss_pred eccCCCCEEEEEeCCceEEEEEccceeeeec--ceehhhhhhhHHHHHHHhcCCCC
Confidence 345678889988899999999988743 322 34555433555666667754443
No 88
>PRK13318 pantothenate kinase; Reviewed
Probab=82.18 E-value=20 Score=32.21 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.7
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017078 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~ 26 (377)
.+.||+|.+++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 478999999999999863
No 89
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=82.03 E-value=10 Score=33.84 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.7
Q ss_pred EEEeCCCCceEEeeeCCC
Q 017078 10 LVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~ 27 (377)
++||+|-+++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999988654
No 90
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=77.04 E-value=22 Score=31.76 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=35.5
Q ss_pred cccCCCeEEeecchhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeec
Q 017078 127 ETFNAPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~i~pv~~g~~~ 173 (377)
...+... .+.+...||.+++ .....+|||+|.++|-.+.|.+|++.
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 4444455 6777777776654 34689999999999999999999886
No 91
>PRK13326 pantothenate kinase; Reviewed
Probab=76.21 E-value=25 Score=31.78 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=17.1
Q ss_pred cEEEeCCCCceEEeeeCCCC
Q 017078 9 PLVCDNGTGMVKAGFAGDDA 28 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~ 28 (377)
-++||+|-+++|+|+..++.
T Consensus 8 ~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEeCCCeEEEEEEECCE
Confidence 48999999999999987653
No 92
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.88 E-value=2.5 Score=43.51 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=25.4
Q ss_pred hhhccCCce--EEEEeCCCCceEEEEeeCCeec
Q 017078 143 SLYASGRTT--GIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 143 a~~~~g~~~--~lVVDiG~~~t~i~pv~~g~~~ 173 (377)
|+|-+|..+ ++++|+|+++|+++-+.+|.+.
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEE
Confidence 344446666 9999999999999999988765
No 93
>PRK13320 pantothenate kinase; Reviewed
Probab=72.23 E-value=38 Score=30.21 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=16.0
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017078 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~ 26 (377)
.+.||+|.+++|.|+..+
T Consensus 4 ~L~iDiGNT~ik~~~~~~ 21 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEG 21 (244)
T ss_pred EEEEEeCCCcEEEEEEEC
Confidence 588999999999998864
No 94
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=62.14 E-value=27 Score=29.60 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=17.6
Q ss_pred cccCCccCCHHHHHHHHHHHh
Q 017078 72 PIEHGIVSNWDDMEKIWHHTF 92 (377)
Q Consensus 72 p~~~g~i~~~~~~~~~~~~~~ 92 (377)
-+++|.|.|.+.+.+.++.++
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai 56 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAV 56 (187)
T ss_pred CccCcEEECHHHHHHHHHHHH
Confidence 468999999998888888876
No 95
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=60.85 E-value=56 Score=29.78 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=36.4
Q ss_pred hhhhcccccCCCeEEeecchhhhhhcc------CCceEEEEeCCCCceEEEEeeCCeeccc
Q 017078 121 MTQIMFETFNAPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~------g~~~~lVVDiG~~~t~i~pv~~g~~~~~ 175 (377)
+.+.+-+.+++| |++.++.-+++++- +..+.+.|.+|.+ +-...|.||.++..
T Consensus 88 l~~~l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~G-iG~giv~~G~~~~G 146 (291)
T PRK05082 88 LVQTLEQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTG-VGGGIVLNGKLLTG 146 (291)
T ss_pred hHHHHHHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCC-cceEEEECCEEeeC
Confidence 333333556887 77889888887642 3467889999844 66677889987753
No 96
>PRK13331 pantothenate kinase; Reviewed
Probab=55.76 E-value=12 Score=33.52 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=24.7
Q ss_pred CCCCCCCCcEEEeCCCCceEEeeeCCC
Q 017078 1 MADGEDIQPLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 1 ~~~~~~~~~vviD~Gs~~~k~G~~~~~ 27 (377)
||+...+.-++||+|.+++++|+..++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECC
Confidence 888999999999999999999998754
No 97
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=55.66 E-value=5.9 Score=37.64 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=20.1
Q ss_pred hcCceeccCCCCCCChHHHHHHHHHh
Q 017078 296 YGNIVLSGGSTMFPGIADRMSKEISA 321 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~ 321 (377)
...|++|||++.-+-|.++|++.|..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 45799999999999999999988744
No 98
>PRK13322 pantothenate kinase; Reviewed
Probab=54.93 E-value=1.3e+02 Score=26.91 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.9
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017078 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~ 26 (377)
.++||+|-+++|.|+..+
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 479999999999999864
No 99
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=51.71 E-value=17 Score=30.79 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=35.0
Q ss_pred hhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 295 LYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 295 l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
-.+.|+++||.++-+-+.+.+.+-+. .+|.+... ..++-+||+++|..
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~------~~V~~~~~---~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLG------RPVVRPEV---EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHT------SEEEEESS---STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhC------CceEeCCC---CchHHHHHHHHHHh
Confidence 35679999999999877777776663 35555443 46788999988753
No 100
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=51.05 E-value=22 Score=32.42 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhh
Q 017078 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|...+...+.-++++ .|||.|+.+..+-|-+++++.+..... ...+++..+.....++-.||+.++
T Consensus 221 la~~l~~l~~~~dpe-------~IvlgG~~~~~~~~~~~i~~~l~~~~~-~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 221 IARLIADLKATLDCQ-------CVVLGGSVGLAEGYLELVQAYLAQEPA-IYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHhCCC-------EEEEcCccccHHHHHHHHHHHHHhccc-ccCCeEEECccCCchhhhhHHHHh
Confidence 444555555544443 577777766666677777777766421 123455545445666788988765
No 101
>PRK09698 D-allose kinase; Provisional
Probab=49.07 E-value=31 Score=31.62 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=35.8
Q ss_pred hhhhcccccCCCeEEeecchhhhhhcc------CCceEEEEeCCCCceEEEEeeCCeeccc
Q 017078 121 MTQIMFETFNAPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~------g~~~~lVVDiG~~~t~i~pv~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+.++.-|++++- +..+.+.|.+|.+ +-...|.+|.++..
T Consensus 96 l~~~l~~~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv~~G~~~~G 154 (302)
T PRK09698 96 LADKLENTLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVWMNGAPWTG 154 (302)
T ss_pred HHHHHHHHhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEEECCEEeeC
Confidence 444444557887 67888877776531 3457888999855 66677889988743
No 102
>PRK00292 glk glucokinase; Provisional
Probab=47.87 E-value=1.4e+02 Score=27.65 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=32.8
Q ss_pred hhcccccCCCeEEeecchhhhhhcc-----------C--C----ceEEEEeCCCCceEEEEeeCC
Q 017078 123 QIMFETFNAPAMYVAIQAVLSLYAS-----------G--R----TTGIVLDSGDGVSHTVPIYEG 170 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~-----------g--~----~~~lVVDiG~~~t~i~pv~~g 170 (377)
+.+-+.+++|.|.+.++.-|++++. | + .+.++|-+|.+ +-...|.+|
T Consensus 84 ~~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv~~g 147 (316)
T PRK00292 84 AAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGLVPV 147 (316)
T ss_pred HHHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEEEec
Confidence 3344567888899999999998874 2 2 46778888744 555556666
No 103
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=46.55 E-value=29 Score=31.91 Aligned_cols=53 Identities=9% Similarity=0.032 Sum_probs=37.7
Q ss_pred hhhhcccccCCCeEEeecchhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeeccc
Q 017078 121 MTQIMFETFNAPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~i~pv~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+.++.-+++++- +..+.+.|.+|.+ +-...|.||.++..
T Consensus 88 l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv~~G~l~~G 147 (303)
T PRK13310 88 LRADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVFNGKPISG 147 (303)
T ss_pred HHHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEEECCEEeeC
Confidence 444444667887 77888888877542 3467888899864 67778889988754
No 104
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=46.07 E-value=22 Score=26.29 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.3
Q ss_pred CcEEEeCCCCceEEeeeCC
Q 017078 8 QPLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~ 26 (377)
..+.||+|.+.+++|+..+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 4689999999999998854
No 105
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=43.53 E-value=2.2e+02 Score=25.99 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhC-CCCceEEEECCCCCccceehhhHHhh
Q 017078 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA-PSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~-~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|...|...+.-++++ .|||-||.+..+-|.+.+++.+.+.. +...++++........+.-.||+.++
T Consensus 233 la~~l~n~~~~ldP~-------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 233 LAICLGNILTIVDPH-------LVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHcCCC-------EEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 444455555545443 57777776766777788888887543 22123445444444566777888765
No 106
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=43.09 E-value=12 Score=35.16 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=34.2
Q ss_pred hcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCC------CCccceehhhHHhhc
Q 017078 296 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP------ERKYSVWIGGSILAS 350 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~ 350 (377)
.++++++||.+.-.-|+++|++..... .++++.++ +.-+-+|.|...+..
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~~-----~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKER-----GGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc-----CCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 467999999999988888887766542 34555544 233447888766544
No 107
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=41.61 E-value=2.5e+02 Score=24.95 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=37.4
Q ss_pred hhhhcccccCCCeEEeecchhhhhhcc-------CCceEEEEeCCCCceEEEEeeCCeeccc
Q 017078 121 MTQIMFETFNAPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~i~pv~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+-++.-+++++. +..+.+.|-+|.+ +-...|.||.++..
T Consensus 88 l~~~l~~~~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG-iG~giv~~G~l~~G 147 (256)
T PRK13311 88 LQADLSRLIQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG-VGGGLIVNGSIVSG 147 (256)
T ss_pred hHHHHHHHHCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC-eEEEEEECCEEecC
Confidence 444444556777 67888888887643 3468888888844 77788889988754
No 108
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=39.56 E-value=81 Score=23.07 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=18.4
Q ss_pred EEEEeCCCCceEEEEe-eCCeeccc
Q 017078 152 GIVLDSGDGVSHTVPI-YEGYALPH 175 (377)
Q Consensus 152 ~lVVDiG~~~t~i~pv-~~g~~~~~ 175 (377)
.+.+|+|.+.+.++.+ .+|..+..
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~ 27 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADP 27 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecC
Confidence 5789999999988877 46666643
No 109
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=39.47 E-value=26 Score=25.97 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=34.2
Q ss_pred cCCccCCHHHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhccccc
Q 017078 74 EHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129 (377)
Q Consensus 74 ~~g~i~~~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~ 129 (377)
..|.+.|+..+++.++.+. +.| ++..+.-.+++. ...-|.+++++++.+
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l 90 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DRL-----DHALLNDVPGLE-NPTAENLARWIYDRL 90 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-HhC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHH
Confidence 4789999999999988865 433 455555555553 345678888888765
No 110
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.36 E-value=1.5e+02 Score=26.84 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=27.7
Q ss_pred EeecchhhhhhccCC----ceEEEEeCCCCceEEEEeeCCeec
Q 017078 135 YVAIQAVLSLYASGR----TTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 135 ~~~~~~~~a~~~~g~----~~~lVVDiG~~~t~i~pv~~g~~~ 173 (377)
.+.++-.++.+++-. .-.+|||+|.++|..+.|-++++.
T Consensus 208 v~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 208 VAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 444554555444432 468999999999999999888664
No 111
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=39.10 E-value=1.1e+02 Score=29.50 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred cEEEeCCCCceEEeeeCCCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCHHHHHHHH
Q 017078 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIW 88 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~~ 88 (377)
+++||-||+-+|+=...=+.+-.-.|-.+-...-....+| .+-+.+.-..--+.++.++
T Consensus 69 ~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPG---------------------LSsfaddp~~aA~Sl~~LL 127 (453)
T KOG1385|consen 69 AIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPG---------------------LSSFADDPEEAANSLRPLL 127 (453)
T ss_pred EEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCc---------------------ccccCCChHHHHHhHHHHH
Q ss_pred HHHhccccCCCCCCCcEEEeeCCCC---ChHHHHhhhhhcccccCCCeEEeecchhhhhhccC-----------------
Q 017078 89 HHTFYNELRVAPEEHPVLLTEAPLN---PKANREKMTQIMFETFNAPAMYVAIQAVLSLYASG----------------- 148 (377)
Q Consensus 89 ~~~~~~~L~~~~~~~~vvl~~~~~~---~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g----------------- 148 (377)
+++-...=..-.+..||++--..-. +...-+.+++.+-|.|.-.+-+-+.+.- ....-|
T Consensus 128 d~A~~~vP~~~~~kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~-VsIm~GtdEGv~aWiTiN~Llg~ 206 (453)
T KOG1385|consen 128 DVAEAFVPREHWKKTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDA-VSIMDGTDEGVYAWITINYLLGT 206 (453)
T ss_pred HHHHhhCCHhHhccCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCc-eeeccCcccceeeeeehhhhhcc
Q ss_pred -----CceEEEEeCCCCceEEE
Q 017078 149 -----RTTGIVLDSGDGVSHTV 165 (377)
Q Consensus 149 -----~~~~lVVDiG~~~t~i~ 165 (377)
..+.=|+|+|+++|+|+
T Consensus 207 L~~~~~~tvgv~DLGGGSTQi~ 228 (453)
T KOG1385|consen 207 LGAPGHRTVGVVDLGGGSTQIT 228 (453)
T ss_pred cCCCCCCceEEEEcCCceEEEE
No 112
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=35.98 E-value=24 Score=33.50 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=20.6
Q ss_pred cCceeccCCCCCCChHHHHHHHH
Q 017078 297 GNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~eL 319 (377)
+.|++|||++.-|-|.+||++.|
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999998877
No 113
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=34.82 E-value=69 Score=29.43 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=31.4
Q ss_pred EEEEeCCCCceEEEEeeCCeecccceEEecccHH---HHHHHHHHHHHhcCC
Q 017078 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR---DLTDHLMKILTERGY 200 (377)
Q Consensus 152 ~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~---~i~~~l~~~l~~~~~ 200 (377)
.+=||+|+.+|.++.+.++.++ .....+-|++ ...+.|.+++.+.+.
T Consensus 34 ~~GIDiGStt~K~Vlld~~~i~--~~~~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVCDGELY--GYNSMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEEEeCchhEEEEEEeCCEEE--EEEeecCCCCHHHHHHHHHHHHHHHcCC
Confidence 3447999999999999887655 3344566653 455556666655543
No 114
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=34.49 E-value=23 Score=34.55 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=42.0
Q ss_pred cEEEeeCCC------CChHHHHhhhhhccccc-CC---------CeEEeecchhhhh-----hccC------CceEEEEe
Q 017078 104 PVLLTEAPL------NPKANREKMTQIMFETF-NA---------PAMYVAIQAVLSL-----YASG------RTTGIVLD 156 (377)
Q Consensus 104 ~vvl~~~~~------~~~~~~~~l~~~lfe~~-~~---------~~v~~~~~~~~a~-----~~~g------~~~~lVVD 156 (377)
++.++++.+ +...-|+.+.+++.+.. +. ..-.+.|.|-+.. ++-+ ....++||
T Consensus 176 ~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VD 255 (463)
T TIGR01319 176 FYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILID 255 (463)
T ss_pred eEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEE
Confidence 344555443 34567777777765432 11 1223444444332 2222 24579999
Q ss_pred CCCCceEEEEeeCCeec
Q 017078 157 SGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 157 iG~~~t~i~pv~~g~~~ 173 (377)
||+.+|+|-.+.+|.+-
T Consensus 256 IGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 256 IGGATTDVHSAAAGELS 272 (463)
T ss_pred cCccccchhhccCCCcc
Confidence 99999999999999654
No 115
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=33.24 E-value=26 Score=32.78 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=36.6
Q ss_pred HHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCC------CCccceehhhHHhhcc
Q 017078 291 IRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP------ERKYSVWIGGSILASL 351 (377)
Q Consensus 291 ~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~l 351 (377)
++..=.+.++++||.+.-..|++++++.... ..++++.|| +.-+-+|.|...|.+-
T Consensus 257 l~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~-----~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~g 318 (342)
T COG0533 257 LKHTGKKELVIAGGVAANSRLREMLEEMCKE-----RGAEVYIPPLELCTDNAAMIAYAGLLRYKAG 318 (342)
T ss_pred HHHhCCCEEEEeccHHHhHHHHHHHHHHHHh-----cCCEEEcCChHhccchHHHHHHHHHHHHHcC
Confidence 3334445699999999988777777766542 135555544 3345588888887653
No 116
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=32.80 E-value=3.7e+02 Score=26.66 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred EEEeCCCCceEEeeeC----CCCCCCCCCceeEeeCCCCccccCCCcceeeccccccccCcceeeccccCCccCCHHHHH
Q 017078 10 LVCDNGTGMVKAGFAG----DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~----~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~~~~~~~ 85 (377)
||||-||..+++=..+ ++.|..-+........... .+-+.+..+.... -+.++
T Consensus 12 iviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~-----PGiSsfa~nP~~a------------------~~~l~ 68 (501)
T KOG1386|consen 12 IVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLG-----PGISSFADNPEGA------------------SVYLT 68 (501)
T ss_pred EEEecCCCCceEEEEeecccCCCcccCccchhhcccccC-----CChhhhccChhhh------------------HHHHH
Q ss_pred HHHHHHhccccCCCCCCCcEEEeeCCCC---ChHHHHhhhhhcccccCCCeEEeec--------------------chhh
Q 017078 86 KIWHHTFYNELRVAPEEHPVLLTEAPLN---PKANREKMTQIMFETFNAPAMYVAI--------------------QAVL 142 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~~~vvl~~~~~~---~~~~~~~l~~~lfe~~~~~~v~~~~--------------------~~~~ 142 (377)
.+++.+-...=+-..+++||.|-...-+ +....+++++.+-..+...+=+.+. .-++
T Consensus 69 pLlefA~~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~L 148 (501)
T KOG1386|consen 69 PLLEFAKEHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLL 148 (501)
T ss_pred HHHHHHHhhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHH
Q ss_pred hhhcc------CCceEEEEeCCCCceEEEEeeC---CeecccceEEeccc
Q 017078 143 SLYAS------GRTTGIVLDSGDGVSHTVPIYE---GYALPHAILRLDLA 183 (377)
Q Consensus 143 a~~~~------g~~~~lVVDiG~~~t~i~pv~~---g~~~~~~~~~~~~G 183 (377)
--|.. ...|.=.+|+|+.+|+|+=+.. -..-.....++.+|
T Consensus 149 G~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~~~~e~~~~~~~~~i~~G 198 (501)
T KOG1386|consen 149 GRFGKKNRWDSRKETFGALDLGGASTQITFEPPNQQEEVPKENLQTINYG 198 (501)
T ss_pred HhccccCcccCCcceeeeEecCCceeEEEEecCccccccchhhhhheecC
No 117
>PRK15027 xylulokinase; Provisional
Probab=31.60 E-value=34 Score=33.91 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=31.1
Q ss_pred hcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 296 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||+++-+-+.+-+..-+ +.+|.+ ..+...++-.||+++|..
T Consensus 387 ~~~i~~~GGga~s~~w~Qi~Adv~------g~pv~~--~~~~~~~~a~GaA~lA~~ 434 (484)
T PRK15027 387 PQSVTLIGGGARSEYWRQMLADIS------GQQLDY--RTGGDVGPALGAARLAQI 434 (484)
T ss_pred ccEEEEeCcccCCHHHHHHHHHHh------CCeEEe--ecCCCcchHHHHHHHHHH
Confidence 456999999999876655555444 224433 222334678999999864
No 118
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=31.54 E-value=46 Score=29.62 Aligned_cols=50 Identities=20% Similarity=0.469 Sum_probs=36.3
Q ss_pred ceeccCC-CCCCChHHHHHHHHHhhCCC-CceEEEECCCCCccceehhhHHhhcc
Q 017078 299 IVLSGGS-TMFPGIADRMSKEISALAPS-SMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 299 Ivl~GG~-s~i~g~~~rl~~eL~~~~~~-~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|-+.|+. -+.|+|.+++++.|..+++. ..+|++.... -++=+||++.|..
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~---dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSE---DGSGVGAAIAAAV 240 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-S---STHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEec---CchHHHHHHHHHH
Confidence 3333443 46899999999999999987 3467766553 5588999998864
No 119
>PF13941 MutL: MutL protein
Probab=31.17 E-value=31 Score=33.90 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=46.2
Q ss_pred CCcEEEeeCCCC------ChHHHHhhhhhccccc-CCC---------eEEeecchhhhh-----hcc-CCceEEEEeCCC
Q 017078 102 EHPVLLTEAPLN------PKANREKMTQIMFETF-NAP---------AMYVAIQAVLSL-----YAS-GRTTGIVLDSGD 159 (377)
Q Consensus 102 ~~~vvl~~~~~~------~~~~~~~l~~~lfe~~-~~~---------~v~~~~~~~~a~-----~~~-g~~~~lVVDiG~ 159 (377)
..+++++++.+. ...-|+.+.+++.+.. +.+ .-.++|.|-+.. ++- +...-++||||+
T Consensus 178 ~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGG 257 (457)
T PF13941_consen 178 GKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGG 257 (457)
T ss_pred CCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccC
Confidence 456777765542 3455666665554421 222 223455554433 344 567899999999
Q ss_pred CceEEEEeeCCeecccc
Q 017078 160 GVSHTVPIYEGYALPHA 176 (377)
Q Consensus 160 ~~t~i~pv~~g~~~~~~ 176 (377)
.+|+|-.+.+|.+....
T Consensus 258 ATTDVhSv~~~~~~~~~ 274 (457)
T PF13941_consen 258 ATTDVHSVAEGSPEIPG 274 (457)
T ss_pred cccchhhhccCCccccc
Confidence 99999999977665443
No 120
>PF13941 MutL: MutL protein
Probab=28.91 E-value=35 Score=33.52 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=18.4
Q ss_pred cEEEeCCCCceEEeeeC--CCCCCC
Q 017078 9 PLVCDNGTGMVKAGFAG--DDAPRA 31 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~--~~~P~~ 31 (377)
.+++|+||++||+-... ++.+++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ 26 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRL 26 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEE
Confidence 68999999999988776 555553
No 121
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=28.88 E-value=61 Score=31.96 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=31.8
Q ss_pred hcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 296 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||.|+-+-+.+.+.+-+ +.+|.+... ..++-.||+++|..
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~------g~pv~~~~~---~e~~a~GaA~~a~~ 437 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIF------GTPVDVPEG---EEGPALGAAILAAW 437 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHh------CCceeecCC---CcchHHHHHHHHHH
Confidence 467999999999986666555444 224444332 34678999999865
No 122
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=28.48 E-value=1e+02 Score=29.80 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=31.9
Q ss_pred eEEEEeCCCCceEEEEeeCCeecccceEEecccHHHHHHHHHHHHHhcCC
Q 017078 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDHLMKILTERGY 200 (377)
Q Consensus 151 ~~lVVDiG~~~t~i~pv~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 200 (377)
..+=||+|+++|.++.+.++.++.........--....+.+.+++.+.|.
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl 194 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAGV 194 (404)
T ss_pred EEEEEEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcCC
Confidence 45668999999999999888776444332221234555556666655443
No 123
>PLN02666 5-oxoprolinase
Probab=27.59 E-value=57 Score=36.54 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.2
Q ss_pred ceEEEEeCCCCceEEEEeeCCe
Q 017078 150 TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 150 ~~~lVVDiG~~~t~i~pv~~g~ 171 (377)
.+.+++|+|+++|+|+.| +|.
T Consensus 314 ~~~I~~DmGGTTtDv~li-~g~ 334 (1275)
T PLN02666 314 KPVIGFDMGGTSTDVSRY-DGS 334 (1275)
T ss_pred CCEEEEecCCceeeeEEE-cCc
Confidence 468999999999999988 554
No 124
>PRK00976 hypothetical protein; Provisional
Probab=27.46 E-value=81 Score=29.46 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=24.9
Q ss_pred hccCCceEEEEeCCCCceEEEEeeCCeecc
Q 017078 145 YASGRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 145 ~~~g~~~~lVVDiG~~~t~i~pv~~g~~~~ 174 (377)
+-++..+.+|+|+|+ .|....|.||+++-
T Consensus 144 ~~~~~~~fi~~diss-ntv~~~V~~gkIvg 172 (326)
T PRK00976 144 KLFGFENFIVSDISS-NTVTLLVKDGKIVG 172 (326)
T ss_pred hhcCCCcEEEEeccc-cEEEEEEECCEEEc
Confidence 346789999999999 88888999999873
No 125
>PRK00976 hypothetical protein; Provisional
Probab=26.73 E-value=85 Score=29.32 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=28.5
Q ss_pred cCceeccCCCCCC--ChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhc
Q 017078 297 GNIVLSGGSTMFP--GIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 297 ~nIvl~GG~s~i~--g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+.|+|.||.+..+ .+.+++++.+.. . + ....+.+.-+||+.+|.
T Consensus 265 e~IVLGGGVS~~~e~~L~~~I~e~l~~------~--~--a~LG~dAGaiGAA~iA~ 310 (326)
T PRK00976 265 DNVVLAGSVGEMDEPDVSERIKELLDK------K--V--LVLGKESAAIGLALIAR 310 (326)
T ss_pred CEEEEcCccccCchhHHHHHHHHHhcc------c--c--cccCCchHHHHHHHHHH
Confidence 3699999999988 455555555422 1 1 11234778889988774
No 126
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=26.53 E-value=57 Score=30.64 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCChhHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceE-EEECCCCCccceehhhHHhhcc
Q 017078 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKI-KVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v-~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|.+-...+|..|+ ++.......|+.||.++-.-+..+|............++ .-.++++..+-+|.|--++-+.
T Consensus 288 i~~Kt~~ai~~~~--l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNgiMIaw~Gie~l~~~ 362 (405)
T KOG2707|consen 288 ISSKTHRAIKSLL--LQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNGIMIAWTGIEMLRNG 362 (405)
T ss_pred HHHHHHHHHHHhh--hcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcCCcchhhhhHHHHHHhcc
Confidence 4444445555555 445555568999999999888888877665554332110 0112235567799997776544
No 127
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=25.90 E-value=94 Score=27.40 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+=+++|. .+++||+|+....++.++++.+++++-+.||-
T Consensus 74 dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 74 DVLHTIKEHAFV------TSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 345555555552 57899999999999999999999999887765
No 128
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=25.10 E-value=53 Score=29.00 Aligned_cols=19 Identities=42% Similarity=0.316 Sum_probs=15.9
Q ss_pred cEEEeCCCCceEEeeeCCC
Q 017078 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~ 27 (377)
.++||+||+++|+....++
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 4799999999999887643
No 129
>PRK13321 pantothenate kinase; Reviewed
Probab=24.15 E-value=2.3e+02 Score=25.37 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=31.4
Q ss_pred EEEeCCCCceEEEEeeCCeecccceEEe--cccHHHHHHHHHHHHHhcC
Q 017078 153 IVLDSGDGVSHTVPIYEGYALPHAILRL--DLAGRDLTDHLMKILTERG 199 (377)
Q Consensus 153 lVVDiG~~~t~i~pv~~g~~~~~~~~~~--~~GG~~i~~~l~~~l~~~~ 199 (377)
+.||+|.+.+.+..+.++..+....... .-+.+.+...+.+++...+
T Consensus 3 L~IDIGnT~ik~gl~~~~~i~~~~~~~T~~~~~~~~~~~~l~~l~~~~~ 51 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGDRLLRSFRLPTDKSRTSDELGILLLSLFRHAG 51 (256)
T ss_pred EEEEECCCeEEEEEEECCEEEEEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 7899999999998777665553222111 2356777777888776554
No 130
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=23.85 E-value=1e+02 Score=27.71 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+-+++|. .+++||||+....++.++++.+++++-+.||-
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAFT------ASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 445555555652 57899999999999999999999998887764
No 131
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=23.66 E-value=1e+02 Score=27.66 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+-+++|. .+++||||+....++.++++.+++++-+.||-.
T Consensus 76 dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 120 (257)
T cd08626 76 DVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGDL 120 (257)
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHh
Confidence 445666666662 478999999999999999999999988877643
No 132
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=23.49 E-value=4.2e+02 Score=24.46 Aligned_cols=91 Identities=21% Similarity=0.228 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhccccCCCCCC--CcEEEeeCCCCChHHHHhhhhhcccccC--CCeEEeecchhhhhhcc--CCceEEEE
Q 017078 82 DDMEKIWHHTFYNELRVAPEE--HPVLLTEAPLNPKANREKMTQIMFETFN--APAMYVAIQAVLSLYAS--GRTTGIVL 155 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~--~~vvl~~~~~~~~~~~~~l~~~lfe~~~--~~~v~~~~~~~~a~~~~--g~~~~lVV 155 (377)
+.+++.++.++ .+-+.+.+. +.+.|..+-.......+.+.+.+-..|. ...+++..++.+++++. |...|+|+
T Consensus 47 ~rie~~i~~A~-~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL 125 (336)
T KOG1794|consen 47 SRIEDMIREAK-EKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL 125 (336)
T ss_pred HHHHHHHHHHH-hhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence 45677777776 555555543 6677877777666666667777766554 23577788887777765 45899999
Q ss_pred eCCCCceEEEEeeCCeec
Q 017078 156 DSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 156 DiG~~~t~i~pv~~g~~~ 173 (377)
=-|.++.+-.-.-||..-
T Consensus 126 iaGTgs~crl~~~DGs~~ 143 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSEK 143 (336)
T ss_pred EecCCceeEEECCCCCcc
Confidence 999988888778888554
No 133
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=23.28 E-value=46 Score=30.54 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCCCcEEEeCCCCceEEeeeCCCCCCC
Q 017078 5 EDIQPLVCDNGTGMVKAGFAGDDAPRA 31 (377)
Q Consensus 5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~ 31 (377)
...+.|++|+|+++|.++.-.+..|..
T Consensus 75 g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 75 GLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp T-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred CCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 345789999999999999998888863
No 134
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=23.25 E-value=1.1e+02 Score=27.07 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+-+++| ..+++||||+....++.++++.+++++-+.||-
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 34555555555 257899999999888999999999888887764
No 135
>PRK00047 glpK glycerol kinase; Provisional
Probab=23.18 E-value=72 Score=31.74 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=31.6
Q ss_pred hcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 296 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||+|+-+-+.+-+..-+ +.+|.+...+ -++-+||+++|..
T Consensus 404 ~~~i~~~GGga~s~~w~Qi~ADvl------g~pV~~~~~~---e~~a~GaA~~A~~ 450 (498)
T PRK00047 404 LKELRVDGGAVANNFLMQFQADIL------GVPVERPVVA---ETTALGAAYLAGL 450 (498)
T ss_pred CceEEEecCcccCHHHHHHHHHhh------CCeeEecCcc---cchHHHHHHHHhh
Confidence 467999999999876665555444 2244443332 3568999999865
No 136
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=23.15 E-value=1.1e+02 Score=27.52 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+=+++|. .+++||+|+....++.++++.+++++-+.||-
T Consensus 74 dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAFI------TSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 345555555652 47899999999999999999999999887764
No 137
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=22.92 E-value=1.1e+02 Score=27.58 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+-+++|. .+++||||+....++..++..+++++-|.||-
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAFE------KSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 445555555652 67899999999999999999899988887764
No 138
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=22.80 E-value=87 Score=28.42 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCcEEEeeCCCCChHHHHhhhhhcccccCCCeEEeecch
Q 017078 102 EHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQA 140 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~ 140 (377)
+.-+++++|+-+..+..+++++.+ +.|+++...+++..
T Consensus 187 D~ai~VTEPTp~glhD~kr~~el~-~~f~ip~~iViNr~ 224 (284)
T COG1149 187 DLAILVTEPTPFGLHDLKRALELV-EHFGIPTGIVINRY 224 (284)
T ss_pred CEEEEEecCCccchhHHHHHHHHH-HHhCCceEEEEecC
Confidence 566899999999999999999988 88999988777775
No 139
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=22.77 E-value=1.1e+02 Score=27.33 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+-+++|. .+++||+|+....++.++++.+++++-+.||-.
T Consensus 74 dv~~aI~~~AF~------~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (253)
T cd08632 74 DVIETINKYAFV------KNEFPVILSIENHCSIQQQKKIAQYLKEIFGDK 118 (253)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhhh
Confidence 345555555552 578999999999999999999999888777643
No 140
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=22.77 E-value=1.1e+02 Score=26.88 Aligned_cols=44 Identities=27% Similarity=0.335 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+-+++|. .+++||||+....++.++++.+++++-+.||-
T Consensus 74 dv~~aI~~~AF~------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAFI------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 345555555652 47899999999888999999999888877664
No 141
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=22.64 E-value=1.1e+02 Score=27.58 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+-+++| ..+++||||+....++.++++.+++++-|.||-
T Consensus 74 ~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34555555555 257899999999988999999999988887764
No 142
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=22.60 E-value=1.1e+02 Score=30.58 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=31.6
Q ss_pred hcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 296 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||.|+-+-+.+-+.+-+ +.+|.+...+ .++-+||+++|..
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~------g~pV~~~~~~---e~~alGaAl~aa~ 453 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADIL------GKDIVVPEMA---ETTALGAALLAGL 453 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHh------CCceEecCcc---cchHHHHHHHHHh
Confidence 456999999999876655555444 2245444432 3578999999864
No 143
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=22.46 E-value=1.1e+02 Score=27.01 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+=+++|. .+++||||+....++.++++.+++++-+.||-
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAFV------TSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 445555555552 47899999998889999999898888877764
No 144
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=22.19 E-value=1.1e+02 Score=27.44 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+-+++|. .+++||||+....++.++++.+++++-+.||-
T Consensus 74 ~v~~~I~~~AF~------~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAFK------ASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 345555555652 57899999999999999999999998887764
No 145
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=22.02 E-value=74 Score=29.41 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=21.3
Q ss_pred hcCceeccCCCCCCChHHHHHHHHHh
Q 017078 296 YGNIVLSGGSTMFPGIADRMSKEISA 321 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~ 321 (377)
.++|+++||.+.-.-+.++|.+.+..
T Consensus 259 ~~~vvlsGGVa~N~~L~~~l~~~~~~ 284 (305)
T TIGR00329 259 PKELVLVGGVSANKRLREMLETLCQE 284 (305)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 35899999999988888888877754
No 146
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=22.01 E-value=76 Score=31.54 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=31.8
Q ss_pred hcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 296 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|.++||+|+-+-+.+-+..-+ +.+|.+... + -++-+||+++|..
T Consensus 400 ~~~i~~~GGga~s~~w~Qi~ADv~------g~pv~~~~~--~-e~~alGaA~~a~~ 446 (493)
T TIGR01311 400 ITKLRVDGGMTNNNLLMQFQADIL------GVPVVRPKV--T-ETTALGAAYAAGL 446 (493)
T ss_pred CceEEEecccccCHHHHHHHHHhc------CCeeEecCC--C-cchHHHHHHHHHh
Confidence 356999999999886666666554 224544332 2 4567999999865
No 147
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=21.99 E-value=1.2e+02 Score=27.37 Aligned_cols=45 Identities=27% Similarity=0.306 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+=+++|. .+++||||+....++.++++.+++++-+.||-.
T Consensus 76 ~v~~aIk~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 120 (257)
T cd08591 76 DVIEAIAETAFK------TSEYPVILSFENHCSSKQQAKMAEYCREIFGDL 120 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 345555555552 578999999999999999999999998877643
No 148
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=21.95 E-value=69 Score=27.94 Aligned_cols=57 Identities=18% Similarity=0.472 Sum_probs=33.7
Q ss_pred hHHHHhhcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCC-CCccceehhhHHhhcc
Q 017078 290 DIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP-ERKYSVWIGGSILASL 351 (377)
Q Consensus 290 ~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~-~~~~~~w~Gasi~a~l 351 (377)
|+-+-.-+.|+++|.+|. |+... -++... ..+.++.++... .|.=.+|+||.+++.+
T Consensus 70 DldkyAesDvviVGAGSa--GLsAA--Y~I~~~-rPdlkvaIIE~SVaPGGGaWLGGQLFSAM 127 (328)
T KOG2960|consen 70 DLDKYAESDVVIVGAGSA--GLSAA--YVIAKN-RPDLKVAIIESSVAPGGGAWLGGQLFSAM 127 (328)
T ss_pred HHHhhhccceEEECCCcc--cccee--eeeecc-CCCceEEEEEeeecCCCcccccchhhhhh
Confidence 333444467999998873 22211 112112 234566665443 5677899999999987
No 149
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=21.90 E-value=1.1e+02 Score=27.45 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+-+++|. .+++||||+....++.++++.+++++-|.||-
T Consensus 74 ~v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAFK------VSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 445555555652 57899999999999999999999988887764
No 150
>PRK13318 pantothenate kinase; Reviewed
Probab=21.28 E-value=2.9e+02 Score=24.66 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=30.9
Q ss_pred EEEeCCCCceEEEEeeCCeecccceEEe--cccHHHHHHHHHHHHHhcC
Q 017078 153 IVLDSGDGVSHTVPIYEGYALPHAILRL--DLAGRDLTDHLMKILTERG 199 (377)
Q Consensus 153 lVVDiG~~~t~i~pv~~g~~~~~~~~~~--~~GG~~i~~~l~~~l~~~~ 199 (377)
+.||+|.+.+.+..+.+|..+.+..... .-+..++...+.+++...+
T Consensus 3 L~IDIGnT~iK~al~d~g~i~~~~~~~t~~~~~~~~~~~~l~~l~~~~~ 51 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEGGKLVAHWRISTDSRRTADEYGVWLKQLLGLSG 51 (258)
T ss_pred EEEEECCCcEEEEEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 7899999999999888777664322211 1245666666777665443
No 151
>PRK04123 ribulokinase; Provisional
Probab=20.90 E-value=1.4e+02 Score=30.16 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=29.6
Q ss_pred hcCceeccCC-CCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 296 YGNIVLSGGS-TMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~-s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||+ |+-+-+.+-+..-+ +.+|.+...+ -++-+||+++|..
T Consensus 439 ~~~i~~~GGg~s~s~~w~Qi~ADv~------g~pV~~~~~~---e~~alGaA~lA~~ 486 (548)
T PRK04123 439 VEEVIAAGGIARKNPVLMQIYADVL------NRPIQVVASD---QCPALGAAIFAAV 486 (548)
T ss_pred cceEEEeCCCcccCHHHHHHHHHhc------CCceEecCcc---ccchHHHHHHHHH
Confidence 3579999999 88865444443333 2245444332 4567899999865
No 152
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=20.61 E-value=1.3e+02 Score=26.96 Aligned_cols=44 Identities=27% Similarity=0.347 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhccccCCCCCCCcEEEeeCCCCChHHHHhhhhhcccccCC
Q 017078 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNA 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+-+++|. .+++||+|+....++.++++.+++++-|.||-
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 74 DVIETINKYAFI------KNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 445555556652 47899999999999999999999988877764
No 153
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=20.45 E-value=90 Score=31.41 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=30.2
Q ss_pred hcCceeccCC-CCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 296 YGNIVLSGGS-TMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~-s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||+ |+-+-+.+-+..-+ +.+|.+.... -++-.||+++|..
T Consensus 436 ~~~i~~~GGg~a~s~~w~Qi~Adv~------g~pV~~~~~~---e~~a~GaA~lA~~ 483 (536)
T TIGR01234 436 VEELMAAGGIARKNPVIMQIYADVT------NRPLQIVASD---QAPALGAAIFAAV 483 (536)
T ss_pred cceEEEeCCccccCHHHHHHHHHhh------CCeeEeccCC---cchhHHHHHHHHH
Confidence 3679999999 88875555333333 2255554432 3678899998765
No 154
>PRK10331 L-fuculokinase; Provisional
Probab=20.04 E-value=1.2e+02 Score=29.84 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=31.2
Q ss_pred hcCceeccCCCCCCChHHHHHHHHHhhCCCCceEEEECCCCCccceehhhHHhhcc
Q 017078 296 YGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||+++-+-+.+.+..-+ +.+|.+... ..++-+||+++|..
T Consensus 390 ~~~i~~~GGga~s~~w~Qi~Advl------g~pV~~~~~---~e~~a~GaA~la~~ 436 (470)
T PRK10331 390 ASELLLVGGGSRNALWNQIKANML------DIPIKVLDD---AETTVAGAAMFGWY 436 (470)
T ss_pred CceEEEEcccccCHHHHHHHHHhc------CCeeEecCc---ccchHHHHHHHHHH
Confidence 467999999998876655555444 224444332 24678999999865
Done!