Query 017079
Match_columns 377
No_of_seqs 200 out of 1546
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 3.7E-51 8.1E-56 399.1 31.7 263 56-359 62-334 (365)
2 KOG0697 Protein phosphatase 1B 100.0 5.7E-51 1.2E-55 368.0 24.3 282 54-365 17-301 (379)
3 PTZ00224 protein phosphatase 2 100.0 1.8E-47 3.9E-52 374.6 31.5 261 52-361 15-277 (381)
4 KOG0698 Serine/threonine prote 100.0 3.4E-46 7.4E-51 361.9 30.6 256 58-359 38-308 (330)
5 PF00481 PP2C: Protein phospha 100.0 6.4E-47 1.4E-51 355.1 20.1 246 60-347 1-254 (254)
6 KOG0699 Serine/threonine prote 100.0 4.2E-44 9.1E-49 333.6 19.1 180 156-365 327-513 (542)
7 COG0631 PTC1 Serine/threonine 100.0 8.5E-43 1.8E-47 327.8 24.3 249 56-358 5-255 (262)
8 cd00143 PP2Cc Serine/threonine 100.0 1.4E-38 3E-43 296.2 31.1 251 60-354 2-254 (254)
9 smart00332 PP2Cc Serine/threon 100.0 5.8E-38 1.3E-42 292.9 32.4 250 58-352 5-255 (255)
10 KOG0700 Protein phosphatase 2C 100.0 3.3E-39 7.2E-44 307.9 21.6 254 71-342 83-378 (390)
11 PRK14559 putative protein seri 100.0 6.3E-37 1.4E-41 315.8 26.8 246 58-358 374-638 (645)
12 KOG1323 Serine/threonine phosp 100.0 6.5E-30 1.4E-34 236.6 20.1 238 87-358 144-490 (493)
13 KOG1379 Serine/threonine prote 100.0 4.1E-28 8.9E-33 224.8 19.3 209 72-353 90-329 (330)
14 KOG0618 Serine/threonine phosp 99.9 4.3E-23 9.4E-28 213.4 17.3 253 49-357 512-774 (1081)
15 PF13672 PP2C_2: Protein phosp 99.8 2.4E-20 5.2E-25 169.8 14.0 187 64-321 3-195 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 1.8E-16 4E-21 142.1 22.7 175 71-339 15-192 (193)
17 TIGR02865 spore_II_E stage II 99.6 5.6E-14 1.2E-18 150.0 23.6 193 67-354 561-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.5 2.8E-12 6.1E-17 114.6 22.8 178 85-355 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.5 5E-05 1.1E-09 75.2 23.5 189 72-355 161-366 (367)
20 PRK10693 response regulator of 53.7 2E+02 0.0044 27.3 13.0 105 73-191 150-259 (303)
21 PF09436 DUF2016: Domain of un 43.4 15 0.00033 27.5 1.5 21 290-311 23-44 (72)
22 COG2168 DsrH Uncharacterized c 42.6 11 0.00025 29.6 0.8 52 290-349 22-73 (96)
23 PF05402 PqqD: Coenzyme PQQ sy 29.5 1.2E+02 0.0025 21.6 4.4 41 295-337 2-42 (68)
24 COG3700 AphA Acid phosphatase 27.9 74 0.0016 28.3 3.5 49 294-342 71-130 (237)
25 KOG4398 Predicted coiled-coil 22.4 1.4E+02 0.003 28.4 4.3 52 92-143 136-201 (359)
26 PRK05457 heat shock protein Ht 20.5 1.3E+02 0.0027 28.7 3.9 39 283-322 105-143 (284)
27 TIGR00525 folB dihydroneopteri 20.2 4E+02 0.0088 21.3 6.4 56 299-354 41-99 (116)
28 PRK03982 heat shock protein Ht 20.1 1.3E+02 0.0027 28.7 3.9 39 283-322 96-134 (288)
29 cd00534 DHNA_DHNTPE Dihydroneo 20.0 3.3E+02 0.0071 21.8 5.9 54 299-352 42-98 (118)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=3.7e-51 Score=399.15 Aligned_cols=263 Identities=29% Similarity=0.479 Sum_probs=226.5
Q ss_pred CCceeEEEEeccCCCCCCCceEEEeecC----------CCCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCC
Q 017079 56 VAGIRWGSVSLQGLREEMEDGAVIQSDG----------LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSG 125 (377)
Q Consensus 56 ~~~~~~~~~s~~G~R~~nED~~~v~~~~----------~~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~ 125 (377)
...++++..+++|.|+.|||++++..+. .....||+|||||||+.+++++++++.+.+.+..
T Consensus 62 ~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~-------- 133 (365)
T PLN03145 62 IPVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDE-------- 133 (365)
T ss_pred cCceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhh--------
Confidence 3567899999999999999998875532 1234799999999999999999999999886531
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCceeEEEEEeCCEEEEEEeccccEEEEeCCceeecCCCCcCCCCCC
Q 017079 126 KDFDAIKKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQ 205 (377)
Q Consensus 126 ~~~~~~~~~L~~af~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~vanvGDSra~l~r~g~~~~lt~dH~~~~~~~ 205 (377)
.....++++|.++|..+|+.+....... ....+|||+++++|.++.+|+||+||||+|++|+|++++||+||++.+
T Consensus 134 ~~~~~~~~al~~af~~~d~~~~~~~~~~-~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~--- 209 (365)
T PLN03145 134 DFPREIEKVVSSAFLQTDTAFAEACSLD-ASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMC--- 209 (365)
T ss_pred ccchhHHHHHHHHHHHHhHHHHhhhccc-cCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCC---
Confidence 1234678899999999999987643222 234599999999999999999999999999999999999999999987
Q ss_pred CCHhHHHHHHHcCCeEEcCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceE
Q 017079 206 VSLQEIRRIREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDI 285 (377)
Q Consensus 206 ~~~~E~~Ri~~~gg~v~~~rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i 285 (377)
+.|++||.++||+|..+++.|.+.+||||||..+|..+. .+...++++|++
T Consensus 210 --~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~---------------------------~~~~~vs~ePdv 260 (365)
T PLN03145 210 --SKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKG---------------------------SDGGPLSAEPEL 260 (365)
T ss_pred --HHHHHHHHHcCCceecceECCcccccccccccccccccc---------------------------ccCCCcceEEEE
Confidence 799999999999999999999999999999988863210 112346789999
Q ss_pred EEEEeCCCCeEEEEEcCCccccCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCCc
Q 017079 286 FQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYASV 359 (377)
Q Consensus 286 ~~~~L~~~~d~lvLaSDGlwd~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g~~DNiTvIvv~l~~~~~ 359 (377)
..+++.++|+|||||||||||+++++++++++++.+++..+++.+|+.|++.|+.+++.||||||||+|+...+
T Consensus 261 ~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~~~ 334 (365)
T PLN03145 261 MTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQPP 334 (365)
T ss_pred EEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecCCC
Confidence 99999999889999999999999999999999888888889999999999999999999999999999997443
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-51 Score=368.00 Aligned_cols=282 Identities=29% Similarity=0.527 Sum_probs=249.2
Q ss_pred CCCCceeEEEEeccCCCCCCCceEEEe---ecCCCCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCChHH
Q 017079 54 SGVAGIRWGSVSLQGLREEMEDGAVIQ---SDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDA 130 (377)
Q Consensus 54 ~~~~~~~~~~~s~~G~R~~nED~~~v~---~~~~~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~ 130 (377)
.+-.+++||.+|+||||-+|||++... ++..+.++||||||||.|+..+.+++++|.+.+...-.-.-......-+.
T Consensus 17 G~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~ 96 (379)
T KOG0697|consen 17 GEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVEN 96 (379)
T ss_pred CcCCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHH
Confidence 445789999999999999999997664 44467899999999999999999999999998864322111112234568
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCceeEEEEEeCCEEEEEEeccccEEEEeCCceeecCCCCcCCCCCCCCHhH
Q 017079 131 IKKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQE 210 (377)
Q Consensus 131 ~~~~L~~af~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~vanvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E 210 (377)
.+.-|+..|.++|+-+...........++|||++.+++....+|++|+||||++|+|+|+++.-|.||+|++ |.|
T Consensus 97 ~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~-----p~E 171 (379)
T KOG0697|consen 97 VEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYL-----PKE 171 (379)
T ss_pred HHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCC-----hHH
Confidence 899999999999999888766666677799999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHcCCeEEcCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEe
Q 017079 211 IRRIREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSL 290 (377)
Q Consensus 211 ~~Ri~~~gg~v~~~rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L 290 (377)
++||+.|||.|--.||+|.|+|||||||++||... ..++.++.|+++|+++.+..
T Consensus 172 keRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~-------------------------~kgp~eQlVSPEPev~~~~R 226 (379)
T KOG0697|consen 172 KERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVP-------------------------GKGPTEQLVSPEPEVYIIER 226 (379)
T ss_pred HHHHhcCCCeEEEEEecceeeeehhccCcccccCC-------------------------CCCchhcccCCCCceEEeec
Confidence 99999999999999999999999999999999432 66778899999999999998
Q ss_pred CCCCeEEEEEcCCccccCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCCchhhHHH
Q 017079 291 GSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYASVELMRSI 365 (377)
Q Consensus 291 ~~~~d~lvLaSDGlwd~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g~~DNiTvIvv~l~~~~~~~~~~~ 365 (377)
...|||||||+||+||+|+++|+.++|+..|.-..+...+|+.+++..+-+|++||+|+|++-|.+.++......
T Consensus 227 ~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~APkv~~eav 301 (379)
T KOG0697|consen 227 SEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAPKVSIEAV 301 (379)
T ss_pred cccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecCCCCCCCHHHH
Confidence 888899999999999999999999999998888999999999999999999999999999999988776554433
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.8e-47 Score=374.55 Aligned_cols=261 Identities=30% Similarity=0.472 Sum_probs=220.4
Q ss_pred CCCCCCceeEEEEeccCCCCCCCceEEEeecCCCCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCChHHH
Q 017079 52 SLSGVAGIRWGSVSLQGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAI 131 (377)
Q Consensus 52 ~~~~~~~~~~~~~s~~G~R~~nED~~~v~~~~~~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~~ 131 (377)
.......+.+|+.+.+|.|++|||++++..+ ++..+|+|||||||..+++++.+.|.+.+.+.. . ...
T Consensus 15 ~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~--~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~------~----~~~ 82 (381)
T PTZ00224 15 DRAGNSIFRCASACVNGYRESMEDAHLLYLT--DDWGFFGVFDGHVNDECSQYLARAWPQALEKEP------E----PMT 82 (381)
T ss_pred ccCCCccEEEEEEeCCCCCCCCCCeeEeccC--CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcc------c----ccc
Confidence 3457788999999999999999999887543 344699999999999999999999987654321 0 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCceeEEEEEe-CCEEEEEEeccccEEEEeCCceeecCCCCcCCCCCCCCHhH
Q 017079 132 KKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIG-RDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQE 210 (377)
Q Consensus 132 ~~~L~~af~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~-~~~l~vanvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E 210 (377)
.+.|.++|..+|+++... ...+|||+++++|. ++++++|||||||+|++|+|++++||+||++.+ +.|
T Consensus 83 ~~~l~~a~~~~d~~i~~~------~~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~-----~~E 151 (381)
T PTZ00224 83 DERMEELCLEIDEEWMDS------GREGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNN-----PGE 151 (381)
T ss_pred HHHHHHHHHHHHHHHHhc------ccCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCC-----HHH
Confidence 345889999999998752 22469999988886 579999999999999999999999999999987 789
Q ss_pred HHHHHHcCCeEEcCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEe
Q 017079 211 IRRIREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSL 290 (377)
Q Consensus 211 ~~Ri~~~gg~v~~~rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L 290 (377)
+.||.++||.+..+|+.|.+.+||+|||..+|.+.. -...++.|+++|++..+++
T Consensus 152 ~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~K~~~~-------------------------~~~~~~~v~~~Pdi~~~~l 206 (381)
T PTZ00224 152 RQRIEACGGRVVSNRVDGDLAVSRAFGDRSFKVKGT-------------------------GDYLEQKVIAVPDVTHLTC 206 (381)
T ss_pred HhHHHHccCEeccccccCceeeecccCCcccccccc-------------------------cccccCcceeeeEEEEEEC
Confidence 999999999999999999999999999998885321 0012345778999999999
Q ss_pred CCCCeEEEEEcCCccc-cCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCCchh
Q 017079 291 GSDAEFVLLASDGLWD-YMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYASVEL 361 (377)
Q Consensus 291 ~~~~d~lvLaSDGlwd-~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g~~DNiTvIvv~l~~~~~~~ 361 (377)
.++ |+|||||||||| +++++++++++.+.+....+++.+|+.|++.|+.+|+.||||||||++.......
T Consensus 207 ~~~-D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~~~~ 277 (381)
T PTZ00224 207 QSN-DFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGASYA 277 (381)
T ss_pred CCC-CEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCCChh
Confidence 988 899999999999 8999999999987776778999999999999999999999999999998765433
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-46 Score=361.92 Aligned_cols=256 Identities=40% Similarity=0.585 Sum_probs=223.1
Q ss_pred cee-EEEEeccCCCCCCCceEEEeecC------CC-CeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCChH
Q 017079 58 GIR-WGSVSLQGLREEMEDGAVIQSDG------LD-GFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFD 129 (377)
Q Consensus 58 ~~~-~~~~s~~G~R~~nED~~~v~~~~------~~-~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~ 129 (377)
.+. .+..+.+|+|..|||++....+. .. ...||||||||||..+|+|+.++|+..+.+.+... ....
T Consensus 38 ~~~~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~-----~~~~ 112 (330)
T KOG0698|consen 38 SYRLGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFP-----KDRQ 112 (330)
T ss_pred cccceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcc-----cchH
Confidence 344 44558888999999999887663 22 46899999999999999999999999998876532 2225
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhhccccCCCCceeEEEEEeCC-EEEEEEeccccEEEEeCC-ceeecCCCCcCCCCCCC
Q 017079 130 AIKKALQEAFE-NVDMKLLNRLEMNAEEDESGATATVMFIGRD-ILFISHVGDCCVVLSRTG-KADVLTNPHRPYGSGQV 206 (377)
Q Consensus 130 ~~~~~L~~af~-~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~-~l~vanvGDSra~l~r~g-~~~~lt~dH~~~~~~~~ 206 (377)
.++.++.++|. ++|..+... ......+|||++++++.++ +||+||+||||++|++.| ++++||.||+|..
T Consensus 113 ~~~~a~~~~F~~~~D~~~~~~---~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~---- 185 (330)
T KOG0698|consen 113 DVKDALRRAFLTKTDSEFLEK---REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDR---- 185 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCc----
Confidence 78999999999 699999864 2224678888888888865 999999999999999866 8999999999987
Q ss_pred CHhHHHHHHHcCCeEEc----CeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEec
Q 017079 207 SLQEIRRIREAGGWISN----GRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIAS 282 (377)
Q Consensus 207 ~~~E~~Ri~~~gg~v~~----~rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 282 (377)
++|++||+++||+|.. .|+.|.|++||||||..+|. ++|+++
T Consensus 186 -~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~---------------------------------~~v~a~ 231 (330)
T KOG0698|consen 186 -EDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKS---------------------------------QGVIAE 231 (330)
T ss_pred -HHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcC---------------------------------CcEecC
Confidence 8999999999999984 39999999999999999872 668899
Q ss_pred ceEEEEEeCCCCeEEEEEcCCccccCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCCc
Q 017079 283 PDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYASV 359 (377)
Q Consensus 283 P~i~~~~L~~~~d~lvLaSDGlwd~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g~~DNiTvIvv~l~~~~~ 359 (377)
|++....+.+.++||||+||||||.++++|++++|+..+.....+..++..|.+.|..+++.||||||||.|.....
T Consensus 232 Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~~ 308 (330)
T KOG0698|consen 232 PEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSPK 308 (330)
T ss_pred CceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCccc
Confidence 99999999998899999999999999999999999987766789999999999999999999999999999987754
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=6.4e-47 Score=355.05 Aligned_cols=246 Identities=42% Similarity=0.613 Sum_probs=207.6
Q ss_pred eEEEEeccCCCCCCCceEEEeecC-----CCCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCChHHHHHH
Q 017079 60 RWGSVSLQGLREEMEDGAVIQSDG-----LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKA 134 (377)
Q Consensus 60 ~~~~~s~~G~R~~nED~~~v~~~~-----~~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 134 (377)
.+|+.+.+|+|++|||++++..+. ..+..+|+|||||||..+++++++.+...+.+..... ....+.++
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~------~~~~~~~a 74 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFN------DGNDIEEA 74 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHH------TCHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccc------cccchhhc
Confidence 378899999999999999987743 3567899999999999999999999998777665421 11278999
Q ss_pred HHHHHHH-HHHHHHHHHhhccccCCCCceeEEEEEeCCEEEEEEeccccEEEEeCCcee-ecCCCCcCCCCCCCCHhHHH
Q 017079 135 LQEAFEN-VDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKAD-VLTNPHRPYGSGQVSLQEIR 212 (377)
Q Consensus 135 L~~af~~-~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~vanvGDSra~l~r~g~~~-~lt~dH~~~~~~~~~~~E~~ 212 (377)
|..+|.. ++..+....+.. ....+|||+++++|.++++|+||+||||+||++++... +||.||++.+ +.|+.
T Consensus 75 l~~a~~~~~~~~~~~~~~~~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~-----~~E~~ 148 (254)
T PF00481_consen 75 LRQAFLAFTDESLYSDSENN-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSN-----PDERE 148 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTS-----HHHHH
T ss_pred ccceeeeccccccccccccc-ccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccch-----hhccc
Confidence 9999999 888887643333 67889999999999999999999999999999999888 9999999987 89999
Q ss_pred HHHHcCCeEE-cCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEeC
Q 017079 213 RIREAGGWIS-NGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLG 291 (377)
Q Consensus 213 Ri~~~gg~v~-~~rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L~ 291 (377)
||+++||.+. .+|+.|.|++||||||..+|++. +++|+++|++..+++.
T Consensus 149 RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~------------------------------~~~v~~~P~i~~~~l~ 198 (254)
T PF00481_consen 149 RIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPG------------------------------KPGVIAEPDISEVDLT 198 (254)
T ss_dssp HHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCT------------------------------SSSSB---EEEEEEEB
T ss_pred eeeccccccccchhhhhccccccccccccccccc------------------------------cceeeeeccccccccc
Confidence 9999999999 89999999999999999998522 3678899999999999
Q ss_pred CCCeEEEEEcCCccccCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCe
Q 017079 292 SDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNI 347 (377)
Q Consensus 292 ~~~d~lvLaSDGlwd~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g~~DNi 347 (377)
++++|||||||||||+++++++++++++.+....+++.+|+.|++.|+++|+.|||
T Consensus 199 ~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 199 PDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp TTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred ccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 99779999999999999999999999987766667999999999999999999997
No 6
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-44 Score=333.56 Aligned_cols=180 Identities=36% Similarity=0.640 Sum_probs=166.9
Q ss_pred cCCCCceeEEEEEeCCEEEEEEeccccEEEEeCCceeecCCCCcCCCCCCCCHhHHHHHHHcCCeEE-cCeecccccccc
Q 017079 156 EDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAGGWIS-NGRICGDIAVSR 234 (377)
Q Consensus 156 ~~~~GsT~~~~~i~~~~l~vanvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~v~-~~rv~G~l~~sr 234 (377)
...+|||++||++.+++|+|||.||||++|+|+|+.+-++.||+|.+ ..|..||..+||.|. +|||+|.|.+||
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPED-----evE~~RI~~AGG~vtlDGRVNGGLNLSR 401 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPED-----EVETNRIHAAGGQVTLDGRVNGGLNLSR 401 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCccc-----HHHHHHHHhcCCeEeecceecCccchhh
Confidence 45679999999999999999999999999999999999999999987 799999999999999 899999999999
Q ss_pred ccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEeCCCCeEEEEEcCCccccCChHHHH
Q 017079 235 AFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDYMNSSDAV 314 (377)
Q Consensus 235 a~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L~~~~d~lvLaSDGlwd~l~~~~i~ 314 (377)
||||..||.+. .++..+++|++-|+|....|++.++|+||++||+|++|+.++++
T Consensus 402 A~GDHaYK~N~-------------------------~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVV 456 (542)
T KOG0699|consen 402 AFGDHAYKKNQ-------------------------ELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVV 456 (542)
T ss_pred hhhhhhhhccc-------------------------CCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHH
Confidence 99999999876 45556889999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhc------CCCCCeEEEEEEcCCCCchhhHHH
Q 017079 315 KFVRNQLQQHGDVQLACEALAQAALDQ------HSQDNISIVIADLGYASVELMRSI 365 (377)
Q Consensus 315 ~~v~~~l~~~~~~~~~a~~L~~~A~~~------g~~DNiTvIvv~l~~~~~~~~~~~ 365 (377)
+||+..|.++.....+|+.|++..+.- .+.||+|+|++.|.+...++.+.-
T Consensus 457 dFvr~~l~~n~~ls~iceeL~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk~~elqpnq 513 (542)
T KOG0699|consen 457 DFVRDLLAKNSSLSEICEELCDACLAPSTDGDGTGCDNMTVIITTFKRKSKELQPNQ 513 (542)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhhcCCCCCCCCcCCCcceEEEEEeccchhhcCCcc
Confidence 999999999999999999999999863 256999999999998888887654
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-43 Score=327.85 Aligned_cols=249 Identities=26% Similarity=0.379 Sum_probs=209.6
Q ss_pred CCceeEEEEeccCC-CCCCCceEEEeecCCCC-eeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCChHHHHH
Q 017079 56 VAGIRWGSVSLQGL-REEMEDGAVIQSDGLDG-FSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKK 133 (377)
Q Consensus 56 ~~~~~~~~~s~~G~-R~~nED~~~v~~~~~~~-~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 133 (377)
...+.++..+..|. |.+|||++.+..+.... ..+++|||||||+.+++++++.+++.+.+.+......... ....+
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~--~~~~~ 82 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLN--ESLEE 82 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccc--hhHHH
Confidence 45677788888887 88899999997643211 4699999999999999999999999999887753211111 11789
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCceeEEEEEeCCEEEEEEeccccEEEEeCCceeecCCCCcCCCCCCCCHhHHHH
Q 017079 134 ALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRR 213 (377)
Q Consensus 134 ~L~~af~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~vanvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~R 213 (377)
.|.+++..++..+............||||++++++.++++|+|||||||+|++|+|++++||.||++.+ ..+..+
T Consensus 83 ~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~-----~~~~~~ 157 (262)
T COG0631 83 LLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVN-----RLEQRG 157 (262)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHH-----HHHHhc
Confidence 999999999999998766556778999999999999999999999999999999999999999999965 566666
Q ss_pred HHHcCCeEEcCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEeCCC
Q 017079 214 IREAGGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSD 293 (377)
Q Consensus 214 i~~~gg~v~~~rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L~~~ 293 (377)
+...++.+..+|.. .+|||||+.++ +.|++...++.++
T Consensus 158 ~~~~~~~~~~~~~~---~ltralG~~~~---------------------------------------~~p~~~~~~~~~~ 195 (262)
T COG0631 158 IITPEEARSHPRRN---ALTRALGDFDL---------------------------------------LEPDITELELEPG 195 (262)
T ss_pred CCCHHHHHhCccch---hhhhhcCCCcc---------------------------------------cceeEEEEEcCCC
Confidence 55555555555554 78888888753 4799999999999
Q ss_pred CeEEEEEcCCccccCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCC
Q 017079 294 AEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYAS 358 (377)
Q Consensus 294 ~d~lvLaSDGlwd~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g~~DNiTvIvv~l~~~~ 358 (377)
|++|||||||||.++++++.++++ ...+++++++.|++.|+++++.||+|+|+|.+....
T Consensus 196 -d~llL~SDGl~d~v~~~~i~~il~----~~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 196 -DFLLLCSDGLWDVVSDDEIVDILK----NSETPQEAADKLIELALEGGGPDNITVVLVRLNGEG 255 (262)
T ss_pred -CEEEEECCCCccCcCHHHHHHHHh----cCCCHHHHHHHHHHHHHhcCCCCceEEEEEEeeccc
Confidence 999999999999999999999995 478999999999999999999999999999998765
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=1.4e-38 Score=296.19 Aligned_cols=251 Identities=38% Similarity=0.587 Sum_probs=216.5
Q ss_pred eEEEEeccCCCCCCCceEEEeecCC-CCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCChHHHHHHHHHH
Q 017079 60 RWGSVSLQGLREEMEDGAVIQSDGL-DGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEA 138 (377)
Q Consensus 60 ~~~~~s~~G~R~~nED~~~v~~~~~-~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~a 138 (377)
.++..+..|.|+.|||++++..... .+..+|+|||||||+..++++++.+.+.+.+.+..... .....+...|.++
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~ 78 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT---LSEEDIEEALRKA 78 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc---cchHHHHHHHHHH
Confidence 4677788888999999999876531 15579999999999999999999999999887653211 2356788899999
Q ss_pred HHHHHHHHHHHHhhccccCCCCceeEEEEEeCCEEEEEEeccccEEEEeCCceeecCCCCcCCCCCCCCHhHHHHHHHcC
Q 017079 139 FENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAG 218 (377)
Q Consensus 139 f~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~vanvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~g 218 (377)
|+.+++.+............+|||++++++.++.++++|+||||+|++|+++++++|.||++.+ +.|..||...+
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~-----~~~~~~i~~~~ 153 (254)
T cd00143 79 FLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVN-----EEERERIEKAG 153 (254)
T ss_pred HHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcC-----hHHHHHHHHcC
Confidence 9999999988655545667899999999999999999999999999999999999999999975 68999999999
Q ss_pred CeEEcCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEe-CCCCeEE
Q 017079 219 GWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSL-GSDAEFV 297 (377)
Q Consensus 219 g~v~~~rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L-~~~~d~l 297 (377)
|++...+..+...+||+||+..+| +.+.+.|++..+++ .++ |+|
T Consensus 154 ~~~~~~~~~~~~~~t~~lG~~~~~----------------------------------~~~~~~~~~~~~~l~~~~-d~i 198 (254)
T cd00143 154 GRVSNGRVPGVLAVTRALGDFDLK----------------------------------PGVSAEPDVTVVKLTEDD-DFL 198 (254)
T ss_pred CcEEeCEEcCceeeccccCCcccc----------------------------------CCEEcCCeEEEEEeCCCC-cEE
Confidence 998888889999999999998776 23457899999999 777 999
Q ss_pred EEEcCCccccCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEc
Q 017079 298 LLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADL 354 (377)
Q Consensus 298 vLaSDGlwd~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g~~DNiTvIvv~l 354 (377)
|||||||||+++++++.+++..... ..+++++|+.|++.|..+++.||+|+|++.+
T Consensus 199 ll~SDG~~~~l~~~~i~~~~~~~~~-~~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 199 ILASDGLWDVLSNQEAVDIVRSELA-KEDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred EEECCCCeeccChHHHHHHHHHHhc-ccCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 9999999999999999999964210 0279999999999999999999999999875
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=5.8e-38 Score=292.90 Aligned_cols=250 Identities=41% Similarity=0.661 Sum_probs=215.3
Q ss_pred ceeEEEEeccCCCCCCCceEEEeecCCCCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCChHHHHHHHHH
Q 017079 58 GIRWGSVSLQGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQE 137 (377)
Q Consensus 58 ~~~~~~~s~~G~R~~nED~~~v~~~~~~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 137 (377)
.+.++..+.+|.|..|||++++......+..+++|||||||..+++++++.+.+.+.+..... ......+.+.|.+
T Consensus 5 ~~~~~~~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~ 80 (255)
T smart00332 5 GLRYGLSSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKH----KDELEDVEEALRK 80 (255)
T ss_pred ceeEEEecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhc----ccchhHHHHHHHH
Confidence 466777788888999999999876533567899999999999999999999998887654321 1122468889999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCceeEEEEEeCCEEEEEEeccccEEEEeCCceeecCCCCcCCCCCCCCHhHHHHHHHc
Q 017079 138 AFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREA 217 (377)
Q Consensus 138 af~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~vanvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~ 217 (377)
++..++..+............+|||++++++.+++++++|+||||+|++|++++.++|.||++.+ ..|..||...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~-----~~~~~~i~~~ 155 (255)
T smart00332 81 AFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSN-----EDERARIEAA 155 (255)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcC-----HHHHHHHHHc
Confidence 99999999988655554557799999999999999999999999999999999999999999976 7899999999
Q ss_pred CCeEEcCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEe-CCCCeE
Q 017079 218 GGWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSL-GSDAEF 296 (377)
Q Consensus 218 gg~v~~~rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L-~~~~d~ 296 (377)
++.+..++..+...+||++|+..+| +.+.+.|++...++ .++ |+
T Consensus 156 ~~~~~~~~~~~~~~lt~~~g~~~~~----------------------------------~~i~~~p~~~~~~~~~~~-d~ 200 (255)
T smart00332 156 GGFVINGRVNGVLALSRAIGDFFLK----------------------------------PYVSAEPDVTVVELTEKD-DF 200 (255)
T ss_pred CCEEECCeECCeEecccccCCHhhc----------------------------------CCeEeeeEEEEEEecCCC-cE
Confidence 9999999999999999999998765 45678899999996 777 99
Q ss_pred EEEEcCCccccCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Q 017079 297 VLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIA 352 (377)
Q Consensus 297 lvLaSDGlwd~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g~~DNiTvIvv 352 (377)
||||||||||+++++++.+++.+.... .++.++|+.|++.|..++..||+|+||+
T Consensus 201 ill~SDGv~~~l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 201 LILASDGLWDVLSNQEVVDIVRKHLSK-SDPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred EEEECCccccCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 999999999999999999999754222 3689999999999999999999999985
No 10
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-39 Score=307.88 Aligned_cols=254 Identities=30% Similarity=0.451 Sum_probs=201.2
Q ss_pred CCCCceEEEeecCCCCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCC-----CC-------------------
Q 017079 71 EEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLS-----GK------------------- 126 (377)
Q Consensus 71 ~~nED~~~v~~~~~~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~-----~~------------------- 126 (377)
+.-||++-+......++.|+||||||||.++++|++++|+.++...|++..-.. .+
T Consensus 83 ~~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~ 162 (390)
T KOG0700|consen 83 KAEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSA 162 (390)
T ss_pred CcccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhccccc
Confidence 345788766555457788999999999999999999999999997776521111 11
Q ss_pred -C-hHHHHHHHHHHHHHHHHHHHHHH----hhccccCCCCceeEEEEEeCCEEEEEEeccccEEEEe---CC---ceeec
Q 017079 127 -D-FDAIKKALQEAFENVDMKLLNRL----EMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSR---TG---KADVL 194 (377)
Q Consensus 127 -~-~~~~~~~L~~af~~~~~~l~~~~----~~~~~~~~~GsT~~~~~i~~~~l~vanvGDSra~l~r---~g---~~~~l 194 (377)
. ...+.++|.+||+++++.++... ...+....+|+|+++.+|.+..|||||+|||||+|.+ +| ..+||
T Consensus 163 ~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qL 242 (390)
T KOG0700|consen 163 DQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQL 242 (390)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEec
Confidence 1 46788999999999999997654 3345667899999999999999999999999999964 34 47999
Q ss_pred CCCCcCCCCCCCCHhHHHHHHHcCC----eEEcC--eeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhh
Q 017079 195 TNPHRPYGSGQVSLQEIRRIREAGG----WISNG--RICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFC 268 (377)
Q Consensus 195 t~dH~~~~~~~~~~~E~~Ri~~~gg----~v~~~--rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~ 268 (377)
|.||+.++ ++|+.||+..+- .|... ||.|.|++||||||.++|.++-+. ++... .|.
T Consensus 243 S~dHn~~n-----e~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~-----------e~l~~-~fr 305 (390)
T KOG0700|consen 243 STDHNASN-----EDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQ-----------EPLLE-KFR 305 (390)
T ss_pred Chhhcccc-----HHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhcc-----------chhHh-hcC
Confidence 99999987 899999999873 44454 999999999999999999654220 11110 111
Q ss_pred hhhcccCCCceEecceEEEEEeCCCCeEEEEEcCCccccCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 017079 269 VRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQH 342 (377)
Q Consensus 269 ~~~~~~~~~~v~~~P~i~~~~L~~~~d~lvLaSDGlwd~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g 342 (377)
. .....+|+++++|+++..+|.+.|.||||+||||||+|+++|++.+|...+.....-+.+|+.|++.|+.+.
T Consensus 306 ~-~~~~t~PyltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 306 I-PYIGTPPYLTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred C-CCCCCCCceeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 1 223347999999999999999999999999999999999999999998776653333678999999998654
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=6.3e-37 Score=315.80 Aligned_cols=246 Identities=20% Similarity=0.230 Sum_probs=186.3
Q ss_pred ceeEEEEeccCC-CCCCCceEEEeecC----------CCCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCC
Q 017079 58 GIRWGSVSLQGL-REEMEDGAVIQSDG----------LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGK 126 (377)
Q Consensus 58 ~~~~~~~s~~G~-R~~nED~~~v~~~~----------~~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~ 126 (377)
.+.++..+++|. |++|||++.+..+. ..+..+|+|||||||+.+++.|++.+.+.+.+.+.... ...
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~--~~~ 451 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHW--QDE 451 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhh--ccc
Confidence 578899999997 99999998775421 11346999999999999888888887777766554211 111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhcc--ccCCCCceeEEEEEeCCEEEEEEeccccEEEE-eCCceeecCCCCcCCCC
Q 017079 127 DFDAIKKALQEAFENVDMKLLNRLEMNA--EEDESGATATVMFIGRDILFISHVGDCCVVLS-RTGKADVLTNPHRPYGS 203 (377)
Q Consensus 127 ~~~~~~~~L~~af~~~~~~l~~~~~~~~--~~~~~GsT~~~~~i~~~~l~vanvGDSra~l~-r~g~~~~lt~dH~~~~~ 203 (377)
...++.|.++|..+|..|........ ....||||++++++.++++|++||||||+|++ |+|++++||+||++.
T Consensus 452 --~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~-- 527 (645)
T PRK14559 452 --LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVG-- 527 (645)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHH--
Confidence 12356799999999999987544333 45579999999999999999999999999988 578999999999983
Q ss_pred CCCCHhHHHHHHHcCCeEE----cCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCce
Q 017079 204 GQVSLQEIRRIREAGGWIS----NGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLV 279 (377)
Q Consensus 204 ~~~~~~E~~Ri~~~gg~v~----~~rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 279 (377)
.+++ +.| +. .++ .+...+|||||+...+
T Consensus 528 ----~~lv----~~G--i~~~~a~~~-p~~~~LTrALG~~~~~------------------------------------- 559 (645)
T PRK14559 528 ----QREI----QRG--VEPQIAYAR-PDAYQLTQALGPRDNS------------------------------------- 559 (645)
T ss_pred ----HHHH----HhC--CCHHHHhcC-cccceeeeccCCCCCC-------------------------------------
Confidence 1222 233 21 122 2446788888875432
Q ss_pred EecceEEEEEeCCCCeEEEEEcCCcccc-CChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCC
Q 017079 280 IASPDIFQVSLGSDAEFVLLASDGLWDY-MNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYAS 358 (377)
Q Consensus 280 ~~~P~i~~~~L~~~~d~lvLaSDGlwd~-l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g~~DNiTvIvv~l~~~~ 358 (377)
..+|++..+.+.++ |+||||||||||+ +.+..+.+.+...+....+++++++.|++.|+.+|+.||||+|||++...+
T Consensus 560 ~l~Pdi~~~~L~~g-D~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p 638 (645)
T PRK14559 560 AIQPDIQFLEIEED-TLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQYNGHDNITAILVRLKVRP 638 (645)
T ss_pred cccceEEEEEcCCC-CEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCC
Confidence 13789999999987 9999999999995 333334444445556777999999999999999999999999999987544
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=6.5e-30 Score=236.61 Aligned_cols=238 Identities=26% Similarity=0.400 Sum_probs=187.2
Q ss_pred eeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCcc--------------------------------CCCCChHHHHHH
Q 017079 87 FSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLL--------------------------------LSGKDFDAIKKA 134 (377)
Q Consensus 87 ~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~--------------------------------~~~~~~~~~~~~ 134 (377)
..+|-+||||.|..++-.+++.+.+.+.+.++.-.. +.-....-+..+
T Consensus 144 ~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViGA 223 (493)
T KOG1323|consen 144 GALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIGA 223 (493)
T ss_pred ceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHHH
Confidence 579999999999999999999998888777662000 000112346789
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCceeEEEEEeCCEEEEEEeccccEEEEeCCceeecCCCCcCCCCCCCCHhHHHHH
Q 017079 135 LQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRI 214 (377)
Q Consensus 135 L~~af~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~~l~vanvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri 214 (377)
|+.||+.+|+.+.+ +.......+|||+++++.--+++|+||.||||++|+|++++++|+++-+| +.|++|+
T Consensus 224 lEsAFqemDeqiar--er~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTP-------etERqRl 294 (493)
T KOG1323|consen 224 LESAFQEMDEQIAR--ERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTP-------ETERQRL 294 (493)
T ss_pred HHHHHHHHHHHHHH--HHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCc-------HHHHHHH
Confidence 99999999999987 34456678999999999999999999999999999999999999999999 8999999
Q ss_pred HHcC--------C-----------------------------eE----E--------------cCeeccccccccccCCc
Q 017079 215 REAG--------G-----------------------------WI----S--------------NGRICGDIAVSRAFGDI 239 (377)
Q Consensus 215 ~~~g--------g-----------------------------~v----~--------------~~rv~G~l~~sra~Gd~ 239 (377)
+..+ + |. + ..|+.+.+.|||.|||.
T Consensus 295 Q~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH 374 (493)
T KOG1323|consen 295 QELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDH 374 (493)
T ss_pred HHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcc
Confidence 9854 1 11 0 12556778999999999
Q ss_pred ccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEeCC----CCeEEEEEcCCccccCChHHHHH
Q 017079 240 RFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGS----DAEFVLLASDGLWDYMNSSDAVK 315 (377)
Q Consensus 240 ~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L~~----~~d~lvLaSDGlwd~l~~~~i~~ 315 (377)
.+|....++ .-+|++++.|++.+++|.. .||++||+||||||+++++|+..
T Consensus 375 ~Lkv~dsnl-------------------------~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~ 429 (493)
T KOG1323|consen 375 HLKVVDSNL-------------------------SIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVAL 429 (493)
T ss_pred eeeeecCCc-------------------------ccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHH
Confidence 998543222 1245666899999999865 25899999999999999999999
Q ss_pred HHHHHHHccC--CH---HHHHHHHHHHHHhc-------------CCCCCeEEEEEEcCCCC
Q 017079 316 FVRNQLQQHG--DV---QLACEALAQAALDQ-------------HSQDNISIVIADLGYAS 358 (377)
Q Consensus 316 ~v~~~l~~~~--~~---~~~a~~L~~~A~~~-------------g~~DNiTvIvv~l~~~~ 358 (377)
+|+..|.... +| ..+|+.|+..|... |+.|||||.|+.+....
T Consensus 430 ~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~~ 490 (493)
T KOG1323|consen 430 IVRSFLPSTDPADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYCA 490 (493)
T ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccCCC
Confidence 9998885543 33 35778888777432 46799999999987543
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=4.1e-28 Score=224.82 Aligned_cols=209 Identities=20% Similarity=0.286 Sum_probs=162.0
Q ss_pred CCCceEEEeecCCCCeeEEEEeeCCCCch-----HHHHHHHHHHHHHHHHHhCCccCCCCChHHHHHHHHHHHHHHHHHH
Q 017079 72 EMEDGAVIQSDGLDGFSFAAVFDGHGGVS-----TVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKL 146 (377)
Q Consensus 72 ~nED~~~v~~~~~~~~~~~~V~DG~GG~~-----~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~af~~~~~~l 146 (377)
..||++++..+. ...+.|||||+|||. .+.| +++|++.|.+..+. ....+.++...|.+|+.++
T Consensus 90 ~GEDa~Fvss~~--~~~v~GVADGVGGWa~~GiDpg~f-S~eLM~~ce~~v~~----~~~~~~~P~~lL~~ay~~l---- 158 (330)
T KOG1379|consen 90 GGEDAWFVSSNP--HAIVMGVADGVGGWAEYGIDPGAF-SRELMSNCERLVQN----SDFNPSDPVNLLEKAYAEL---- 158 (330)
T ss_pred CCCcceeeccCc--ccceEEEccccchHhhcCcCHHHH-HHHHHHHHHHHhcc----cccCCCChHHHHHHHHHHH----
Confidence 479999998763 446999999999998 4444 67777787777664 4455668899999999887
Q ss_pred HHHHhhccccCCCCceeEEEEEe--CCEEEEEEeccccEEEEeCCceeecCCCCcCCCCCCCCHhHHHHHHHcCCeEEcC
Q 017079 147 LNRLEMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAGGWISNG 224 (377)
Q Consensus 147 ~~~~~~~~~~~~~GsT~~~~~i~--~~~l~vanvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~v~~~ 224 (377)
.......-++||+|++.++ +++||+||+|||.+.++|+|+++.-|.++.++.+
T Consensus 159 ----~~~~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN--------------------- 213 (330)
T KOG1379|consen 159 ----KSQKVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFN--------------------- 213 (330)
T ss_pred ----hhcCCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccC---------------------
Confidence 2334456688999999998 8899999999999999999999999999998642
Q ss_pred eeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEeCCCCeEEEEEcCCc
Q 017079 225 RICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGL 304 (377)
Q Consensus 225 rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L~~~~d~lvLaSDGl 304 (377)
.||+.+.++..+..+..+. --..+.+.+++++| |+||||||||
T Consensus 214 -----------------------------------~PyQLs~~p~~~~~~~~d~-p~~ad~~~~~v~~G-DvIilATDGl 256 (330)
T KOG1379|consen 214 -----------------------------------TPYQLSSPPEGYSSYISDV-PDSADVTSFDVQKG-DVIILATDGL 256 (330)
T ss_pred -----------------------------------CceeeccCCccccccccCC-ccccceEEEeccCC-CEEEEecccc
Confidence 2333322221110000110 02358899999999 9999999999
Q ss_pred cccCChHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHhc-----------------------CCCCCeEEEEEE
Q 017079 305 WDYMNSSDAVKFVRNQLQ-QHGDVQLACEALAQAALDQ-----------------------HSQDNISIVIAD 353 (377)
Q Consensus 305 wd~l~~~~i~~~v~~~l~-~~~~~~~~a~~L~~~A~~~-----------------------g~~DNiTvIvv~ 353 (377)
||++.+++|..++..... ...++|..|+.|++.|.+. |+.||||+||..
T Consensus 257 fDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 257 FDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred cccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 999999999999987665 5678999999999999765 457999999875
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=4.3e-23 Score=213.35 Aligned_cols=253 Identities=25% Similarity=0.369 Sum_probs=207.5
Q ss_pred CCCCCCCCCceeEEEEeccCCCCCCCceEEEeecC-CCCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCC
Q 017079 49 APSSLSGVAGIRWGSVSLQGLREEMEDGAVIQSDG-LDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKD 127 (377)
Q Consensus 49 ~~~~~~~~~~~~~~~~s~~G~R~~nED~~~v~~~~-~~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~ 127 (377)
.|+...-..-+.+|++...|.|..+--+.....++ ......|+++||-+......++...+..++.+.++.. ..+
T Consensus 512 ~~d~~~n~~~~t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~----~~e 587 (1081)
T KOG0618|consen 512 TPDGNVNAFLWTYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLY----GNE 587 (1081)
T ss_pred CCccccceeheeeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhc----cCh
Confidence 33333344566789999999988766553333322 2223699999999999999999999999998887631 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCceeEEEEEeCC--------EEEEEEeccccEEEEeCCceeecCCCCc
Q 017079 128 FDAIKKALQEAFENVDMKLLNRLEMNAEEDESGATATVMFIGRD--------ILFISHVGDCCVVLSRTGKADVLTNPHR 199 (377)
Q Consensus 128 ~~~~~~~L~~af~~~~~~l~~~~~~~~~~~~~GsT~~~~~i~~~--------~l~vanvGDSra~l~r~g~~~~lt~dH~ 199 (377)
.+.|+.+|...++++-. .....|..++.+.|..+ ++++||+|+|.++++++|+..++|+-..
T Consensus 588 ----t~~mr~~fl~~~rklg~------~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~ 657 (1081)
T KOG0618|consen 588 ----TEQMRNTFLRLNRKLGE------EGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPM 657 (1081)
T ss_pred ----HHHHHHHHHHHhhhhhh------hhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCccccccc
Confidence 23399999999998843 23445666677777643 7899999999999999999999988775
Q ss_pred CCCCCCCCHhHHHHHHHcCCeEE-cCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCc
Q 017079 200 PYGSGQVSLQEIRRIREAGGWIS-NGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDL 278 (377)
Q Consensus 200 ~~~~~~~~~~E~~Ri~~~gg~v~-~~rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (377)
.. .+++|.+||+.++|+|. +++++|+...||++|.+... |+
T Consensus 658 ~~----v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~----------------------------------P~ 699 (1081)
T KOG0618|consen 658 LE----VDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLF----------------------------------PH 699 (1081)
T ss_pred cc----CCHHHHHHHHHhcCeecCCCeeeceeeeeeeccccccc----------------------------------cc
Confidence 43 23899999999999999 89999999999999999876 45
Q ss_pred eEecceEEEEEeCCCCeEEEEEcCCccccCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCC
Q 017079 279 VIASPDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISIVIADLGYA 357 (377)
Q Consensus 279 v~~~P~i~~~~L~~~~d~lvLaSDGlwd~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g~~DNiTvIvv~l~~~ 357 (377)
|.+.|++....|++.|+|||+++-++|++|+-+++++.++ +..+|-.||.+|++.|..+|..||++|+||++...
T Consensus 700 v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vR----n~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~~ 774 (1081)
T KOG0618|consen 700 VLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVR----NVEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNHL 774 (1081)
T ss_pred ccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHh----cCCchHHHHHHHHHHHHhcccccCeeEEEEEeecc
Confidence 7789999999999999999999999999999999999996 67899999999999999999999999999998654
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.84 E-value=2.4e-20 Score=169.82 Aligned_cols=187 Identities=22% Similarity=0.308 Sum_probs=108.3
Q ss_pred EeccCCCCCCCceEEEeecCCCCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCChHH-HHHHHHHHHHHH
Q 017079 64 VSLQGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDA-IKKALQEAFENV 142 (377)
Q Consensus 64 ~s~~G~R~~nED~~~v~~~~~~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~L~~af~~~ 142 (377)
.+++|.|+.|||++.+... ++..+++|+||+||...++.+++.+++.+.+.+.... ...... .+..++.+...+
T Consensus 3 ~sh~~~~~~nqD~~~~~~~--~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD--DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLL---SQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TTSSS--EEEEEE-T--CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC--CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHH
Confidence 4788999999999997655 3335779999999999888888888888887777532 111112 233333333333
Q ss_pred HHHH---HHHHhhccccCCCCceeEEEEEeCCEEEEEEeccccEE-EEeCCceeecCCCCcCCCCCCCCHhHHHHHHHcC
Q 017079 143 DMKL---LNRLEMNAEEDESGATATVMFIGRDILFISHVGDCCVV-LSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAG 218 (377)
Q Consensus 143 ~~~l---~~~~~~~~~~~~~GsT~~~~~i~~~~l~vanvGDSra~-l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~g 218 (377)
...+ .............+||++++++.++.++++|+||||+| +.++|++..++.+|+. |...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~---------~~~~----- 143 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSG---------EYPN----- 143 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BH---------HHHH-----
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccc---------hhhh-----
Confidence 3221 01112244677889999999999999999999999996 4689999999999973 1111
Q ss_pred CeEEcCeeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEeCCCCeEEE
Q 017079 219 GWISNGRICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVL 298 (377)
Q Consensus 219 g~v~~~rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L~~~~d~lv 298 (377)
.++.+.... +. ...++..+++.++ +.|+
T Consensus 144 -------------~~~~~~~~~------------------------------------~~--~~~~~~~~~~~~~-d~il 171 (212)
T PF13672_consen 144 -------------QTRSLTGDD------------------------------------PE--PDVQYGSIPLEEG-DVIL 171 (212)
T ss_dssp -------------CTTSCCHHC------------------------------------CC--TETEEEEEE--TT--EEE
T ss_pred -------------hhhccCccc------------------------------------cc--cCCeEEEEEcCCC-CEEE
Confidence 011111110 00 1337777888888 9999
Q ss_pred EEcCCccccCChHH-HHHHHHHHH
Q 017079 299 LASDGLWDYMNSSD-AVKFVRNQL 321 (377)
Q Consensus 299 LaSDGlwd~l~~~~-i~~~v~~~l 321 (377)
|||||||+.+.+.+ +..++.+.+
T Consensus 172 L~SDG~~~~l~~~~~~~~~l~~~~ 195 (212)
T PF13672_consen 172 LCSDGVWDNLRSYEDLEQFLKDLW 195 (212)
T ss_dssp EE-HHHHTTS-HHHHHHHH-----
T ss_pred EECcCccccCCCHHHHHHHhhhcc
Confidence 99999999998655 667775543
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.76 E-value=1.8e-16 Score=142.11 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=129.0
Q ss_pred CCCCceEEEeecCCCCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 017079 71 EEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLLNRL 150 (377)
Q Consensus 71 ~~nED~~~v~~~~~~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~af~~~~~~l~~~~ 150 (377)
...-|.+.+.... ++..+++|+||||+...+.+++..+...+.+.+... ..+.+.+..+|+.+...
T Consensus 15 ~~~GD~~~~~~~~-~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~------------~~~~~~l~~~n~~l~~~- 80 (193)
T smart00331 15 QVGGDFYDVVKLP-EGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG------------ISLSQILERLNRAIYEN- 80 (193)
T ss_pred hcCccEEEEEEeC-CCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC------------CCHHHHHHHHHHHHHhc-
Confidence 4567888776553 456799999999988888888888888877655421 12444566666666542
Q ss_pred hhccccCCCCceeEEEEE--eCCEEEEEEeccccEEEEe-CCceeecCCCCcCCCCCCCCHhHHHHHHHcCCeEEcCeec
Q 017079 151 EMNAEEDESGATATVMFI--GRDILFISHVGDCCVVLSR-TGKADVLTNPHRPYGSGQVSLQEIRRIREAGGWISNGRIC 227 (377)
Q Consensus 151 ~~~~~~~~~GsT~~~~~i--~~~~l~vanvGDSra~l~r-~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~v~~~rv~ 227 (377)
....+++|++++++ .+++++++|+||+++|+++ ++...+.+.+..+
T Consensus 81 ----~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~~--------------------------- 129 (193)
T smart00331 81 ----GEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDLGA--------------------------- 129 (193)
T ss_pred ----CCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCCCc---------------------------
Confidence 24568999999998 5789999999999999998 6665555554332
Q ss_pred cccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEeCCCCeEEEEEcCCcccc
Q 017079 228 GDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDY 307 (377)
Q Consensus 228 G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L~~~~d~lvLaSDGlwd~ 307 (377)
.+|.... ..+++..+++.++ |+|+|+|||+||.
T Consensus 130 -------------------------------------------~lG~~~~---~~~~~~~~~l~~g-d~l~l~TDGl~e~ 162 (193)
T smart00331 130 -------------------------------------------PLGLEPD---VEVDVRELTLEPG-DLLLLYTDGLTEA 162 (193)
T ss_pred -------------------------------------------eeeeCCC---CcceeEEEeeCCC-CEEEEECCCcccc
Confidence 1121111 1467788899999 9999999999999
Q ss_pred CChHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 017079 308 MNSSDAVKFVRNQLQQHGDVQLACEALAQAAL 339 (377)
Q Consensus 308 l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~ 339 (377)
++++++.+++.+. ...+++++++++.+.+.
T Consensus 163 ~~~~~l~~~l~~~--~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 163 RNPERLEELLEEL--LGSPPAEIAQRILEELL 192 (193)
T ss_pred CChHHHHHHHHHh--cCCCHHHHHHHHHHHHh
Confidence 9999999888753 23568888988888764
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.62 E-value=5.6e-14 Score=150.02 Aligned_cols=193 Identities=18% Similarity=0.234 Sum_probs=138.6
Q ss_pred cCCCCCCCceEEEeecCCCCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCChHHHHHHHHHHHHHHHHHH
Q 017079 67 QGLREEMEDGAVIQSDGLDGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKL 146 (377)
Q Consensus 67 ~G~R~~nED~~~v~~~~~~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~af~~~~~~l 146 (377)
++.+..+.|.+-+.... ++...++|+||+|+...|..++..+.+.+.+.+..+ .+ ...++..+|+.+
T Consensus 561 k~g~~vsGD~y~~~~l~-~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g-----~~-------~~~ai~~lN~~L 627 (764)
T TIGR02865 561 KDGELVSGDSYSFGKLS-AGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESG-----FD-------REVAIKTVNSIL 627 (764)
T ss_pred CCCCcccCceEEEEEEC-CCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcC-----CC-------HHHHHHHHHHHH
Confidence 34467799998776542 555789999999966666666666666555444321 11 245667777766
Q ss_pred HHHHhhccccCCCCceeEEEEEe--CCEEEEEEeccccEEEEeCCceeecCCCCcCCCCCCCCHhHHHHHHHcCCeEEcC
Q 017079 147 LNRLEMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKADVLTNPHRPYGSGQVSLQEIRRIREAGGWISNG 224 (377)
Q Consensus 147 ~~~~~~~~~~~~~GsT~~~~~i~--~~~l~vanvGDSra~l~r~g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~v~~~ 224 (377)
... ....+.+|+.+++++ .+++.++|+|+++.|+.|++++.+++..+-|.
T Consensus 628 ~~~-----~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lPl----------------------- 679 (764)
T TIGR02865 628 SLR-----STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLPI----------------------- 679 (764)
T ss_pred HhC-----CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCcee-----------------------
Confidence 431 234568999999885 67999999999999999999988887665542
Q ss_pred eeccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEeCCCCeEEEEEcCCc
Q 017079 225 RICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGL 304 (377)
Q Consensus 225 rv~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L~~~~d~lvLaSDGl 304 (377)
| ..++ .+++..+.++.+| |+|||+|||+
T Consensus 680 ---G---------------------------------------------il~~---~~~~~~~~~L~~G-D~Lll~SDGv 707 (764)
T TIGR02865 680 ---G---------------------------------------------ILDE---VDVELVRKKLKNG-DLIVMVSDGV 707 (764)
T ss_pred ---E---------------------------------------------eccC---CccceEEEEeCCC-CEEEEECCCC
Confidence 1 1011 2457778899999 9999999999
Q ss_pred cccCChHH-----HHHHHHHHHHccCCHHHHHHHHHHHHHhcC---CCCCeEEEEEEc
Q 017079 305 WDYMNSSD-----AVKFVRNQLQQHGDVQLACEALAQAALDQH---SQDNISIVIADL 354 (377)
Q Consensus 305 wd~l~~~~-----i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g---~~DNiTvIvv~l 354 (377)
||..++.+ +.+++.+ ....+|+++++.|++++.+.. ..||+|++++++
T Consensus 708 ~E~~~~~~~~~~~l~~~l~~--~~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 708 LEGEKEVEGKVLWLVRKLKE--TNTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred CcCCcccccHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 99876533 4444432 134689999999999998753 479999999975
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.54 E-value=2.8e-12 Score=114.64 Aligned_cols=178 Identities=22% Similarity=0.268 Sum_probs=116.0
Q ss_pred CCeeEEEEeeCCCCchHHHHHHHHHHHHHHHHHhCCccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCceeE
Q 017079 85 DGFSFAAVFDGHGGVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLLNRLEMNAEEDESGATAT 164 (377)
Q Consensus 85 ~~~~~~~V~DG~GG~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~af~~~~~~l~~~~~~~~~~~~~GsT~~ 164 (377)
++..+++|+|+.|..-.|.+.+..+...+....... .+ ..+.+..+|+.+..... .....+|++
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~-----~~-------p~~~l~~ln~~l~~~~~----~~~~~~t~~ 65 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEG-----LD-------PEELLEALNRRLYRDLK----GDNRYATAC 65 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT-----TS-------HHHHHHHHHHHHHHHTT----TTSTTEEEE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcC-----CC-------HHHHHHHHHHHHHHHhh----hccccceEE
Confidence 456799999999955555666666666665554422 12 44445555655543211 114678888
Q ss_pred EEEEe--CCEEEEEEeccccEEEEeC--CceeecCCCCcCCCCCCCCHhHHHHHHHcCCeEEcCeeccccccccccCCcc
Q 017079 165 VMFIG--RDILFISHVGDCCVVLSRT--GKADVLTNPHRPYGSGQVSLQEIRRIREAGGWISNGRICGDIAVSRAFGDIR 240 (377)
Q Consensus 165 ~~~i~--~~~l~vanvGDSra~l~r~--g~~~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~v~~~rv~G~l~~sra~Gd~~ 240 (377)
++.++ .++++++|+|++.++++++ +....+.....+
T Consensus 66 ~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 105 (193)
T PF07228_consen 66 YAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGPP---------------------------------------- 105 (193)
T ss_dssp EEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSBB----------------------------------------
T ss_pred EEEecccceEEEEeCCCCCCEEEEeccccceeecccCccc----------------------------------------
Confidence 88875 5689999999999999998 334444333332
Q ss_pred cccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEeCCCCeEEEEEcCCccccCChH-------HH
Q 017079 241 FKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLWDYMNSS-------DA 313 (377)
Q Consensus 241 ~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L~~~~d~lvLaSDGlwd~l~~~-------~i 313 (377)
+|..+. ..+...++++.+| |.|+|+||||+|....+ .+
T Consensus 106 -------------------------------lG~~~~---~~~~~~~~~l~~g-d~l~l~TDGl~e~~~~~~~~~~~~~~ 150 (193)
T PF07228_consen 106 -------------------------------LGIFED---IDYQEQEIQLEPG-DRLLLYTDGLFEALNEDGEFFGEERL 150 (193)
T ss_dssp -------------------------------CSSSCT---TCEEEEEEE--TT-EEEEEECHHHCTTTCHHCHHCCCHHH
T ss_pred -------------------------------eeeecc---ccccceEEEeccc-cEEEEeCCChhhccCCccchhHHHHH
Confidence 111111 1456678899999 99999999999998544 33
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHhc---CCCCCeEEEEEEcC
Q 017079 314 VKFVRNQLQQHGDVQLACEALAQAALDQ---HSQDNISIVIADLG 355 (377)
Q Consensus 314 ~~~v~~~l~~~~~~~~~a~~L~~~A~~~---g~~DNiTvIvv~l~ 355 (377)
.+++.+. ...++++.++.|.+.+... ...||+|++++++.
T Consensus 151 ~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 151 LELLDEN--RGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHHHHCH--TTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred HHHHhhc--cCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 4444321 3467999999999999874 47799999999863
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.48 E-value=5e-05 Score=75.17 Aligned_cols=189 Identities=15% Similarity=0.127 Sum_probs=118.7
Q ss_pred CCCceEEEeecCCCCeeEEEEeeCCC-CchHHHHHHHHHHHHHHHHHhCCccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 017079 72 EMEDGAVIQSDGLDGFSFAAVFDGHG-GVSTVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLLNRL 150 (377)
Q Consensus 72 ~nED~~~v~~~~~~~~~~~~V~DG~G-G~~~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~af~~~~~~l~~~~ 150 (377)
..=|.+-+..... ....++|.|..| |-.++-. -.+.....+.+... ...++... ++.+|+.+...
T Consensus 161 vGGD~yd~~~~~~-~~~~i~I~DvsG~Gv~aal~--m~~~~~~~~~~~~~---~~~~p~~~-------l~~~n~~~~~~- 226 (367)
T COG2208 161 VGGDYYDFIQLGE-KRLRIGIGDVSGKGVPAALL--MLMPKLALRLLLES---GPLDPADV-------LETLNRVLKQN- 226 (367)
T ss_pred cCCceEEEEEECC-cEEEEEEEeccCCCHHHHHH--HHHHHHHHHHhhhc---ccCCHHHH-------HHHHHHHHHhc-
Confidence 4567766555432 456899999988 5544433 22233333333221 12333333 33334333331
Q ss_pred hhccccCCCCceeEEEEEe--CCEEEEEEeccccEEEEeCCce---eecCCCCcCCCCCCCCHhHHHHHHHcCCeEEcCe
Q 017079 151 EMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKA---DVLTNPHRPYGSGQVSLQEIRRIREAGGWISNGR 225 (377)
Q Consensus 151 ~~~~~~~~~GsT~~~~~i~--~~~l~vanvGDSra~l~r~g~~---~~lt~dH~~~~~~~~~~~E~~Ri~~~gg~v~~~r 225 (377)
....+-+|+...+++ ...+..+|+|---.++.+.+.. ..+...-.
T Consensus 227 ----~~~~~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~~g~-------------------------- 276 (367)
T COG2208 227 ----LEEDMFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTALGL-------------------------- 276 (367)
T ss_pred ----ccCCcEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccCCCc--------------------------
Confidence 112277888888886 5689999999999988886532 22222221
Q ss_pred eccccccccccCCcccccchhhhhhccCCCCcccccchhhhhhhhhcccCCCceEecceEEEEEeCCCCeEEEEEcCCcc
Q 017079 226 ICGDIAVSRAFGDIRFKTKKNEMLKKGVNEGRWSEKFVSSIFCVRRVQLNKDLVIASPDIFQVSLGSDAEFVLLASDGLW 305 (377)
Q Consensus 226 v~G~l~~sra~Gd~~~k~~~n~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~L~~~~d~lvLaSDGlw 305 (377)
++|..++. .+.+....+.+| |.+++.|||+.
T Consensus 277 ---------------------------------------------piG~~~~~---~~~~~~~~l~~g-d~lvl~tDGv~ 307 (367)
T COG2208 277 ---------------------------------------------PIGLLPDY---QYEVASLQLEPG-DLLVLYTDGVT 307 (367)
T ss_pred ---------------------------------------------eeeecCCc---cchheeEEecCC-CEEEEEcCCee
Confidence 23333332 567788889997 99999999999
Q ss_pred c-------cCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC----CCCCeEEEEEEcC
Q 017079 306 D-------YMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQH----SQDNISIVIADLG 355 (377)
Q Consensus 306 d-------~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g----~~DNiTvIvv~l~ 355 (377)
| .+..+...+++.+ ....+++++++.+.+.....- -.||+|++++++.
T Consensus 308 Ea~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 308 EARNSDGEFFGLERLLKILGR--LLGQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred eeecCCccEecHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 8 5566777777764 245688899998888887643 4588999999874
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=53.72 E-value=2e+02 Score=27.30 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=54.4
Q ss_pred CCceEEEeecCCCCeeEEEEee--CCCCchHH-HHHHHHHHHHHHHHHhCCccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 017079 73 MEDGAVIQSDGLDGFSFAAVFD--GHGGVSTV-KFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVDMKLLNR 149 (377)
Q Consensus 73 nED~~~v~~~~~~~~~~~~V~D--G~GG~~~a-~~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~af~~~~~~l~~~ 149 (377)
.-|.+-+..-. ++...|.++| ||||+.+. .++...+...+....... ....... ..+.+..+|+.+...
T Consensus 150 ~GD~~d~~~l~-~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~---~~~~~~~----p~~~l~~lN~~l~~~ 221 (303)
T PRK10693 150 PGLVLDIAALS-DNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAH---QNQRLPE----LGALLKQVNHLLRQA 221 (303)
T ss_pred CccEEeeeecC-CCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcc---cccccCC----HHHHHHHHHHHHHhc
Confidence 45666554432 3445666666 88877633 333334333333221100 0000001 244455666666552
Q ss_pred HhhccccCCCCceeEEEEEe--CCEEEEEEeccccEEEEeCCce
Q 017079 150 LEMNAEEDESGATATVMFIG--RDILFISHVGDCCVVLSRTGKA 191 (377)
Q Consensus 150 ~~~~~~~~~~GsT~~~~~i~--~~~l~vanvGDSra~l~r~g~~ 191 (377)
. .. .-.|++..+++ .+++.++|.|-...++..++++
T Consensus 222 ---~--~~-~~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 222 ---N--LP-GQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred ---C--CC-ceeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 1 11 12577777776 4589999999999886545544
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=43.40 E-value=15 Score=27.46 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=16.0
Q ss_pred eC-CCCeEEEEEcCCccccCChH
Q 017079 290 LG-SDAEFVLLASDGLWDYMNSS 311 (377)
Q Consensus 290 L~-~~~d~lvLaSDGlwd~l~~~ 311 (377)
++ +| +.+|+++||+|=-+...
T Consensus 23 l~~~G-~Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 23 LERPG-HRLLVASNGVFLEVRRP 44 (72)
T ss_pred cccCC-cEEEEecCcEEEEEech
Confidence 45 55 99999999999655443
No 22
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=42.62 E-value=11 Score=29.63 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=35.2
Q ss_pred eCCCCeEEEEEcCCccccCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCeEE
Q 017079 290 LGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQHSQDNISI 349 (377)
Q Consensus 290 L~~~~d~lvLaSDGlwd~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g~~DNiTv 349 (377)
+.++ |-|+|+.|||+-.+...+..+-++ ..| .-+=+|-+-..+||-.+.++-
T Consensus 22 l~~~-D~vlL~qdGV~aAl~~~~~~~sl~------~~p-~~~~alkeDl~ARGl~~~~s~ 73 (96)
T COG2168 22 LTEG-DAVLLLQDGVYAALKGNRYLASLR------ESP-IKVYALKEDLLARGLTGQISR 73 (96)
T ss_pred hccc-CeEEEEcccchhhhcCcHHHHHHh------cCc-cceeeehhhHHhccchhhcCc
Confidence 5666 899999999999998887776664 122 223355566667776555554
No 23
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=29.50 E-value=1.2e+02 Score=21.63 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=17.8
Q ss_pred eEEEEEcCCccccCChHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 017079 295 EFVLLASDGLWDYMNSSDAVKFVRNQLQQHGDVQLACEALAQA 337 (377)
Q Consensus 295 d~lvLaSDGlwd~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~ 337 (377)
+++||-.++-. +.-++...++.+.+....++.++++.|+++
T Consensus 2 e~vll~~~~~~--~~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 2 EYVLLDPESGE--FTLNETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp EEEEE------------THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred CEEEEeCCCCC--ccccHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 55566555444 245555666666666666777777766654
No 24
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=27.87 E-value=74 Score=28.32 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=32.6
Q ss_pred CeEEEEEcCCccc-----------cCChHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 017079 294 AEFVLLASDGLWD-----------YMNSSDAVKFVRNQLQQHGDVQLACEALAQAALDQH 342 (377)
Q Consensus 294 ~d~lvLaSDGlwd-----------~l~~~~i~~~v~~~l~~~~~~~~~a~~L~~~A~~~g 342 (377)
||.+|..|.|+|- +|.++..-+.|...-.+..-|.+.|..|++.-.++|
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 4889999999983 444444444443211223458899999999887776
No 25
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.38 E-value=1.4e+02 Score=28.40 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=32.5
Q ss_pred EeeCCCCch--------------HHHHHHHHHHHHHHHHHhCCccCCCCChHHHHHHHHHHHHHHH
Q 017079 92 VFDGHGGVS--------------TVKFLRDELYKECVAALQGGLLLSGKDFDAIKKALQEAFENVD 143 (377)
Q Consensus 92 V~DG~GG~~--------------~a~~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~af~~~~ 143 (377)
|||||+|.+ -++|.+..+.....+..+.+......+...+..+|..+.+-++
T Consensus 136 v~~~~~~~~i~~~i~gp~~slp~ngdY~ay~~w~~~~k~tsn~~~~~~~~ay~i~aAltyt~QLv~ 201 (359)
T KOG4398|consen 136 VCDDHMSDKINFIIPGPTQSLPINGDYIAYKLWAKLAKQTSNGTISLPLDAYPIFAALTYTLQLVH 201 (359)
T ss_pred EEcCCCCcceeEEecCCcccccCCCchHHHHHHHhhhhhccCCCcCCCccccchHHHHHHHHHHHH
Confidence 677777644 3456666666666666666555555555566777777766654
No 26
>PRK05457 heat shock protein HtpX; Provisional
Probab=20.48 E-value=1.3e+02 Score=28.74 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=30.2
Q ss_pred ceEEEEEeCCCCeEEEEEcCCccccCChHHHHHHHHHHHH
Q 017079 283 PDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQ 322 (377)
Q Consensus 283 P~i~~~~L~~~~d~lvLaSDGlwd~l~~~~i~~~v~~~l~ 322 (377)
|..+.....+. ..+|+.|+|+.+.++++|+..++.+.+.
T Consensus 105 ~NAfa~G~~~~-~~~V~vt~gLl~~L~~~El~aVlAHElg 143 (284)
T PRK05457 105 INAFATGASKN-NSLVAVSTGLLQNMSRDEVEAVLAHEIS 143 (284)
T ss_pred ceEEEecCCCC-CeEEEeehHHhhhCCHHHHHHHHHHHHH
Confidence 44444444444 6889999999999999999999987664
No 27
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=20.22 E-value=4e+02 Score=21.25 Aligned_cols=56 Identities=11% Similarity=0.170 Sum_probs=41.4
Q ss_pred EEcCCccccCChHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhcCC-CCCeEEEEEEc
Q 017079 299 LASDGLWDYMNSSDAVKFVRNQLQQH--GDVQLACEALAQAALDQHS-QDNISIVIADL 354 (377)
Q Consensus 299 LaSDGlwd~l~~~~i~~~v~~~l~~~--~~~~~~a~~L~~~A~~~g~-~DNiTvIvv~l 354 (377)
-.+|.+-+.++-.++.+.+.+.+.+. ...+..|+.+++..+.... .+-+++-|-+.
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp 99 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVSKP 99 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEEeC
Confidence 44899999999999999998777643 3677889999998887643 45555555544
No 28
>PRK03982 heat shock protein HtpX; Provisional
Probab=20.09 E-value=1.3e+02 Score=28.67 Aligned_cols=39 Identities=15% Similarity=0.408 Sum_probs=28.9
Q ss_pred ceEEEEEeCCCCeEEEEEcCCccccCChHHHHHHHHHHHH
Q 017079 283 PDIFQVSLGSDAEFVLLASDGLWDYMNSSDAVKFVRNQLQ 322 (377)
Q Consensus 283 P~i~~~~L~~~~d~lvLaSDGlwd~l~~~~i~~~v~~~l~ 322 (377)
|.-+.....+. +.+|.-|||+.+.++++|+..++.+.+.
T Consensus 96 ~NAfa~G~~~~-~~~V~vt~gLl~~l~~~El~AVlAHElg 134 (288)
T PRK03982 96 PNAFATGRDPK-HAVVAVTEGILNLLNEDELEGVIAHELT 134 (288)
T ss_pred cceEEeccCCC-CeEEEeehHHHhhCCHHHHHHHHHHHHH
Confidence 33344444454 5678789999999999999999987663
No 29
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=20.05 E-value=3.3e+02 Score=21.83 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=39.7
Q ss_pred EEcCCccccCChHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHhc-CCCCCeEEEEE
Q 017079 299 LASDGLWDYMNSSDAVKFVRNQLQQH--GDVQLACEALAQAALDQ-HSQDNISIVIA 352 (377)
Q Consensus 299 LaSDGlwd~l~~~~i~~~v~~~l~~~--~~~~~~a~~L~~~A~~~-g~~DNiTvIvv 352 (377)
-.||-+-+.++-..+.+.+.+.+.+. ...+..|+.|++..... ...+.+++-|-
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~~~~v~~v~v~v~ 98 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLEDYPKVSAIKVKVE 98 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 46898989999999999998877643 46788999999988876 23344444443
Done!