BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017080
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 94 VYDAIAPHFSSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNGKY-LGLNPDCFFVGCDI 150
+Y++I +S TR V +N +LP GS++ D G G G Y + L FV +
Sbjct: 4 IYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYA-V 62
Query: 151 SPSLI---KICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVR 207
PS++ + V E A NL D ISI +HH S +K+ +E R
Sbjct: 63 EPSIVXRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHF---SHLEKSFQEXQR 119
Query: 208 VVKKGSLVLIT 218
+++ G++VL+T
Sbjct: 120 IIRDGTIVLLT 130
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 20/135 (14%)
Query: 121 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVD-------RGHEVLVAD 169
P G+ VL+AGCG G + NPD DISP ++ + + + L A+
Sbjct: 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQAN 95
Query: 170 AVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229
+LP+ D VL HL + ++A++ L +V+K G T+ +E + S
Sbjct: 96 IFSLPFEDSSFDHIFVCFVLEHLQSP---EEALKSLKKVLKPGG----TITVIEGDHGSC 148
Query: 230 VTKWTPLTQKYVEEW 244
+ P +K +E W
Sbjct: 149 Y--FHPEGKKAIEAW 161
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 117 LNSLPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA----- 168
L + SG VLD GCG GK L D G IS + R +A
Sbjct: 56 LLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTF 115
Query: 169 ---DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
DA +LP+ DA ++ LHH R +A+ E RV++ G V I
Sbjct: 116 SYADAXDLPFEDASFDAVWALESLHHXPD---RGRALREXARVLRPGGTVAI 164
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 112 KVATFLNSLPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA 168
K +F+N L + + D GCG G +L G D+ P I+I + + A
Sbjct: 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA 95
Query: 169 DAV--------NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
D V NLP++++ D S ++++ E + + E + +KKG + ++
Sbjct: 96 DRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFE----RGMNEWSKYLKKGGFIAVS 149
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 112 KVATFLNSLPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA 168
K +F+N L + + D GCG G +L G D+ P I+I + + A
Sbjct: 42 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA 101
Query: 169 DAV--------NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
D V NLP++++ D S ++++ E + + E + +KKG + ++
Sbjct: 102 DRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFE----RGMNEWSKYLKKGGFIAVS 155
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 12/133 (9%)
Query: 94 VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFV-GCDISP 152
VYD + + +W VA L + G + D GCG G L D + V G D+S
Sbjct: 10 VYDELX---QDVPYPEW--VAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLSE 64
Query: 153 SLIKICVDRGHEV------LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV 206
++I ++ E V D L I L++L TE+ K+ +
Sbjct: 65 EXLEIAQEKAXETNRHVDFWVQDXRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAA 124
Query: 207 RVVKKGSLVLITV 219
R++ G +L V
Sbjct: 125 RLLTDGGKLLFDV 137
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 16/100 (16%)
Query: 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVL--VADAVNLPYR 176
+ VLD GCG G Y P+ G D+S IK R +V VA + LP+
Sbjct: 86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFS 145
Query: 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216
DA I I EEL RVVK G V+
Sbjct: 146 DTSXDAIIRIYA----------PCKAEELARVVKPGGWVI 175
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 14/118 (11%)
Query: 118 NSLPSGSLVLDAGCGNGKY-LGLNPDCFFV-GCDISPSLIKICVDRGH------------ 163
N L +LD GCG+GK L L + V G DI+ I++
Sbjct: 26 NYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKA 85
Query: 164 EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
E V +A +L + D A+ A L + R + I+E+ RV+K G+ + + +
Sbjct: 86 EFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143
>pdb|1XI6|A Chain A, Extragenic Suppressor From Pyrococcus Furiosus
Pfu-1862794- 001
Length = 262
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 284 DKLWESISLTSQSE-DDSVISQDVKIITNQQEYFV---PWHLPYHRAEVSGASACALANG 339
DKL E + L+ +E +V+S++V +I N+ EY V P Y+ ++G AL+
Sbjct: 55 DKLAEDLILSRITELGVNVVSEEVGVIDNESEYTVIVDPLDGSYNF--IAGIPFFALSLA 112
Query: 340 LAKKDDKKGAVVYNRYYHVFCDG 362
+ KKD A++Y F +G
Sbjct: 113 VFKKDKPIYAIIYEPMTERFFEG 135
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 126 VLDAGCGN--GKYLGLNPDCFFVGCDISPSLIKICVDRGH----EVLVADAVNLPYRSDF 179
VLD GCG+ G Y VG DIS I+ +RG + D +LP+ ++
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKAVGVDISEVXIQKGKERGEGPDLSFIKGDLSSLPFENEQ 116
Query: 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219
+A I ++ L +A+ E+ RV+K I +
Sbjct: 117 FEA---IXAINSLEWTEEPLRALNEIKRVLKSDGYACIAI 153
>pdb|1S48|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 1 (Residues 71-679) From Bvdv
pdb|1S49|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 1 (Residues 71-679) From Bovine Viral Diarrhea
Virus Complexed With Gtp
Length = 609
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRV-RSPSA 257
K +E+LVR +K G + A+ + +K V+ VE+ PRV + P A
Sbjct: 168 KHLVEQLVRDLKAGRKIKYYETAIPKNEKRDVSDDWQAGDLVVEK-----RPRVIQYPEA 222
Query: 258 RTLESIPETEDNGSEEQ--------GKEPKQSVPDKL---WES------ISLTSQSEDDS 300
+T +I + N ++Q GK P ++ DK+ W+S +S +++ D
Sbjct: 223 KTRLAITKVXYNWVKQQPVVIPGYEGKTPLFNIFDKVRKEWDSFNEPVAVSFDTKAWDTQ 282
Query: 301 VISQDVKIITNQQEYFVP--WH 320
V S+D+++I Q+Y+ WH
Sbjct: 283 VTSKDLQLIGEIQKYYYKKEWH 304
>pdb|1S4F|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|B Chain B, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|C Chain C, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|D Chain D, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
Length = 601
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRV-RSPSA 257
K +E+LVR +K G + A+ + +K V+ VE+ PRV + P A
Sbjct: 160 KHLVEQLVRDLKAGRKIKYYETAIPKNEKRDVSDDWQAGDLVVEK-----RPRVIQYPEA 214
Query: 258 RTLESIPETEDNGSEEQ--------GKEPKQSVPDKL---WES------ISLTSQSEDDS 300
+T +I + N ++Q GK P ++ DK+ W+S +S +++ D
Sbjct: 215 KTRLAITKVMYNWVKQQPVVIPGYEGKTPLFNIFDKVRKEWDSFNEPVAVSFDTKAWDTQ 274
Query: 301 VISQDVKIITNQQEYFVP--WH 320
V S+D+++I Q+Y+ WH
Sbjct: 275 VTSKDLQLIGEIQKYYYKKEWH 296
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 126 VLDAGCGNGKYLG-LNPDCFF---VGCDISPSLIKICVDRGHEV-----------LVADA 170
V+D GCG G L L D FF G D+S ++I +R + L+ A
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92
Query: 171 VNLPYRSDFG-DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223
+ + G DAA I V+ HL R A E ++ + +V++T +E
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLDLS--RLGAFERVLFEFAQPKIVIVTTPNIE 144
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 126 VLDAGCGNGKYLG-LNPDCFF---VGCDISPSLIKICVDRGHEV-----------LVADA 170
V+D GCG G L L D FF G D+S ++I +R + L+ A
Sbjct: 23 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 82
Query: 171 VNLPYRSDFG-DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223
+ + G DAA I V+ HL R A E ++ + +V++T +E
Sbjct: 83 LTYQDKRFHGYDAATVIEVIEHLDLS--RLGAFERVLFEFAQPKIVIVTTPNIE 134
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQK-YVEEWIGPGSPRVRSPS 256
+ +A+E+LV+ ++ G L + VE S++ P TQ + EW+GP R +
Sbjct: 210 KVQAMEDLVKSLRGGRLTEACIRPVESSLVSVLAH-PPYTQSALISEWLGPVQERFFAHQ 268
Query: 257 ARTLESIP 264
+T +P
Sbjct: 269 CQTYNDVP 276
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQK-YVEEWIGPGSPRVRSPS 256
+ +A+E+LV+ ++ G L + VE S++ P TQ + EW+GP R +
Sbjct: 216 KVQAMEDLVKSLRGGRLTEACIRPVESSLVSVLAH-PPYTQSALISEWLGPVQERFFAHQ 274
Query: 257 ARTLESIP 264
+T +P
Sbjct: 275 CQTYNDVP 282
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 126 VLDAGCGNGKYLGLNPDCFF--VGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAA 183
VLD GCG G++L L + +G DI+ +IK C + + V+ +DA+ Y D
Sbjct: 45 VLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFN-VVKSDAIE--YLKSLPDKY 101
Query: 184 ISIAVLHHL 192
+ ++ H
Sbjct: 102 LDGVMISHF 110
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 119 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDRGH-------EVL 166
L G VLD G G G YL + D+ ++ ++ + EVL
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVL 93
Query: 167 VADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 226
++ +P + D H LS K +EEL RV K + + I W E+ D
Sbjct: 94 KSEENKIPLPDNTVDFIFMAFTFHELSEPL---KFLEELKRVAKPFAYLAIIDWKKEERD 150
Query: 227 KS 228
K
Sbjct: 151 KG 152
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 112 KVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLI--------KICVD 160
K +F+++L + SL+ D GCG G L + G D P I K+ +
Sbjct: 42 KALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQ 101
Query: 161 RGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI--T 218
+ +V +L + D D S ++++ E + ++E +K G + + +
Sbjct: 102 NRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFE----RGLKEWRNYLKPGGYLAVSES 157
Query: 219 VWAVEQEDKSLVTKW 233
VW +Q + W
Sbjct: 158 VWFTDQRPAEIHDFW 172
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 17/135 (12%)
Query: 112 KVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLI--------KICVD 160
K +F+++L + SL+ D GCG G L + G D P I K+ +
Sbjct: 37 KALSFIDNLTNKSLIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQ 96
Query: 161 RGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI--T 218
+ +V +L + D D S ++++ E + ++E +K G + + +
Sbjct: 97 NRVKGIVGSMDDLSFEKDSLDLIWSEGAIYNIGFE----RGLKEWRNYLKPGGYLAVSES 152
Query: 219 VWAVEQEDKSLVTKW 233
VW +Q + W
Sbjct: 153 VWFTDQRPAEIHDFW 167
>pdb|3PFG|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sam And
Dtdp-Phenol
pdb|3PFH|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
pdb|3PFH|D Chain D, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
Length = 263
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 121 PSGSLVLDAGCGNGKYLGLNPDCFFV--GCDISPSLIKICVDRGHEVLV--ADAVNLPYR 176
P + +LD CG G +L D F G ++S ++ I R + ++ D +
Sbjct: 49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLG 108
Query: 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220
F + + HL+ ++ A+E V +V++ W
Sbjct: 109 RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW 152
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 112 KVATFLNSLPSGSLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGHEV--- 165
K +F+++L SL+ D GCG G L + G D I I +
Sbjct: 36 KALSFIDNLTEKSLIADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ 95
Query: 166 -----LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218
+V +LP+R++ D S ++++ E + + E + +KKG + ++
Sbjct: 96 NRVTGIVGSXDDLPFRNEELDLIWSEGAIYNIGFE----RGLNEWRKYLKKGGYLAVS 149
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQK-YVEEWIGPGSPRVRSPS 256
+ +A E+LV+ ++ G L + VE S++ P TQ + EW+GP R +
Sbjct: 207 KVQAXEDLVKSLRGGRLTEACIRPVESSLVSVLAH-PPYTQSALISEWLGPVQERFFAHQ 265
Query: 257 ARTLESIP 264
+T +P
Sbjct: 266 CQTYNDVP 273
>pdb|2CJQ|A Chain A, Bovine Viral Diarrhea Virus Cp7-R12 Rna-Dependent Rna
Polymerase
Length = 720
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 35/147 (23%)
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEW-----IGPGSPRV- 252
K +E+L+R +K G + A+ + +K V+ ++W + PRV
Sbjct: 238 KHLVEQLIRDLKTGRKIRYYETAIPKNEKRDVS----------DDWQSGDLVDEKKPRVI 287
Query: 253 RSPSARTLESIPETEDNGSEEQ--------GKEPKQSVPDKL---WE------SISLTSQ 295
+ P A+T +I + N ++Q GK P ++ +K+ W+ ++S ++
Sbjct: 288 QYPEAKTRLAITKVMYNWVKQQPVVIPGYEGKTPLFNIFNKVRKEWDLFNEPVAVSFDTK 347
Query: 296 SEDDSVISQDVKIITNQQEYFV--PWH 320
+ D V S+D+++I Q+Y+ WH
Sbjct: 348 NWDTQVTSRDLRLIGEIQKYYYRKEWH 374
>pdb|3CGG|A Chain A, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
pdb|3CGG|B Chain B, Crystal Structure Of Tehb-Like Sam-Dependent
Methyltransferase (Np_600671.1) From Corynebacterium
Glutamicum Atcc 13032 Kitasato At 2.00 A Resolution
Length = 195
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 17/126 (13%)
Query: 100 PHFSSTRFAKWPKVATFLNSL-----------PSGSLVLDAGCGNGKYLGL--NPDCFFV 146
P S +W +A N + P G+ +LDAGCG G+ G +
Sbjct: 13 PAHSENYAQRWRNLAAAGNDIYGEARLIDAXAPRGAKILDAGCGQGRIGGYLSKQGHDVL 72
Query: 147 GCDISPSLIKICVDRGHEV--LVAD-AVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 203
G D+ P LI E +V D +V+ +DF D +S + E R+ A+
Sbjct: 73 GTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDF-DLIVSAGNVXGFLAEDGREPALA 131
Query: 204 ELVRVV 209
+ R +
Sbjct: 132 NIHRAL 137
>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
Length = 214
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 108 AKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGH 163
AKW + F N P + ++ G G G ++ NPD ++G DI S++ +D+
Sbjct: 32 AKWRDL--FGNDNP---IHVEVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVL 86
Query: 164 EVLVAD 169
EV V +
Sbjct: 87 EVGVPN 92
>pdb|3E23|A Chain A, Crystal Structure Of The Rpa2492 Protein In Complex With
Sam From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr299
Length = 211
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 111 PKVAT---FLNSLPSGSLVLDAGCGNG 134
P+ AT FL LP+G+ +L+ GCG G
Sbjct: 29 PRSATLTKFLGELPAGAKILELGCGAG 55
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 209 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTL 260
V KG+ V+I +WA+ +K +W Q E ++ P ++ SPS L
Sbjct: 368 VDKGTEVIINLWALHHNEK----EWHQPDQFMPERFLNPAGTQLISPSVSYL 415
>pdb|2A8Y|A Chain A, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|B Chain B, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|C Chain C, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|D Chain D, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|E Chain E, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|F Chain F, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|G Chain G, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|H Chain H, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|I Chain I, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|J Chain J, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|K Chain K, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|2A8Y|L Chain L, Crystal Structure Of 5'-Deoxy-5'methylthioadenosine
Phosphorylase Complexed With 5'-Deoxy-
5'methylthioadenosine And Sulfate
pdb|3T94|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
pdb|3T94|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
pdb|3T94|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
pdb|3T94|D Chain D, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
pdb|3T94|E Chain E, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
pdb|3T94|F Chain F, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase (Mtap) Ii Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate
Length = 270
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 21 EPFSVPITCGNCVFHPGISGTMREVKV----KGASDFCTLGADGESSI 64
E S+ I G+ ++ PGI +E+KV SDF T+G G S+
Sbjct: 6 EKASIGIIGGSGLYDPGIFSESKEIKVYTPYGQPSDFITIGKIGNKSV 53
>pdb|3PNL|B Chain B, Crystal Structure Of E.coli Dha Kinase Dhak-dhal Complex
Length = 211
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 193 STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQ 238
+T++R+ +EEL ++ + G+ +I+ E DK++ W P+ +
Sbjct: 95 ATQARQSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVE 140
>pdb|2BTD|A Chain A, Crystal Structure Of Dhal From E. Coli
Length = 210
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 193 STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQ 238
+T++R+ +EEL ++ + G+ +I+ E DK++ W P+ +
Sbjct: 94 ATQARQSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVE 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,885,846
Number of Sequences: 62578
Number of extensions: 499886
Number of successful extensions: 1222
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 37
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)