BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017080
(377 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80Y20|ALKB8_MOUSE Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus
GN=Alkbh8 PE=2 SV=1
Length = 664
Score = 201 bits (512), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 173/296 (58%), Gaps = 27/296 (9%)
Query: 77 SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKY 136
+ S K ELE+K+VH+VY+ IA HFSSTR + WP++ FL +LPSGS+V D GCGNGKY
Sbjct: 361 TESSKEALELEQKHVHQVYNEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKY 420
Query: 137 LGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196
LG+N D + +GCD S +L+ IC +R + LV DA+ +P RS DA ISIAV+HH +T
Sbjct: 421 LGINKDLYMIGCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAE 480
Query: 197 RRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPS 256
RR +A++EL R+++ G LI VWA+EQE K+ +K+ L K + + G + +
Sbjct: 481 RRVEALQELARLLRPGGQALIYVWAMEQEYKNQKSKY--LRGKRISQ----GDKDELNSA 534
Query: 257 ARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDS--VISQDVKIITNQ-- 312
T E + G E +P SV S S+T + E S V + ++ I N+
Sbjct: 535 TSTEEFLVNQTPEGVNE---DPALSV-----NSSSITKEEEYKSRKVPNSELPIHINRTC 586
Query: 313 ---QEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
Q+ VPWHL + G +G+A D + V++RYYHVFCDGELE
Sbjct: 587 FHSQDVLVPWHLKRN----PGKDKAIEPSGVAGCPDP--SPVFHRYYHVFCDGELE 636
>sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis
GN=alkbh8 PE=2 SV=2
Length = 628
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/281 (41%), Positives = 158/281 (56%), Gaps = 50/281 (17%)
Query: 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF 145
LE++YVH+VYD IA HFSSTR WPK+ FL SLP GSLV D GCGNGKYLG+N D
Sbjct: 369 LEREYVHKVYDDIAGHFSSTRHTPWPKIGDFLASLPKGSLVADVGCGNGKYLGVNKDLCM 428
Query: 146 VGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
+GCD S +L+ IC +R E V DA+++P+R+ DA ISIAV+HH +TE RR A++EL
Sbjct: 429 IGCDRSKNLVDICRERTFEAFVCDALSVPFRAGAFDACISIAVIHHFATEERRIAALQEL 488
Query: 206 VRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265
+R+++KG LI VWA+EQE K + KY++E S + PS+ L
Sbjct: 489 IRLLRKGGKALIYVWALEQEYKKNKS-------KYLKE-----SKTSQGPSSDAL----- 531
Query: 266 TEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQEYFVPWHL-PYH 324
G+ K P L + S SQD+ VPWHL P +
Sbjct: 532 ----GTNLAVKAP-------------LPIHTNRTSFHSQDL---------LVPWHLKPTN 565
Query: 325 RAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
+++V+ N + + VY+R+YHVFC+GELE
Sbjct: 566 KSKVTP------ENKEQNEKEHGPDSVYHRFYHVFCEGELE 600
>sp|A1A4L5|ALKB8_BOVIN Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8
PE=2 SV=1
Length = 664
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 164/306 (53%), Gaps = 51/306 (16%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K +LE+ YVHRVY+ IA HFSSTR WP + FL +LPSGSLV D GCGNGKYLG
Sbjct: 363 SDKEALQLEQDYVHRVYEEIARHFSSTRHTPWPHIVEFLKALPSGSLVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R ++ V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 INNELYMIGCDHSQNLVDICRERQYQAFVCDALAVPIRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258
A++ELVR+++ G LI VWA+EQE + KY+ E R
Sbjct: 483 VAALQELVRLLRPGGKALIYVWAMEQE-------YNKKKSKYLRE-------------NR 522
Query: 259 TLESIPETEDNGSEEQGKEPKQSVPD----KLWESISLTSQSEDDSVISQDVK-----II 309
T + + E N + Q KQ +P+ S+S + +D S++V I
Sbjct: 523 TSQGMKEEISNDASVQELLVKQ-LPNVGNQDSAHSVSSINDFQDGGCNSKNVANSKLPIH 581
Query: 310 TNQ-----QEYFVPWHLPYH-----RAEVSGASACALANGLAKKDDKKGAVVYNRYYHVF 359
TN+ Q+ VPWH + R E G L +D V++RYYHVF
Sbjct: 582 TNRTSFHSQDLLVPWHFKGNPGKDKRVEPFGP--------LGSRDP---GPVFHRYYHVF 630
Query: 360 CDGELE 365
C+GELE
Sbjct: 631 CEGELE 636
>sp|Q96BT7|ALKB8_HUMAN Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens
GN=ALKBH8 PE=1 SV=2
Length = 664
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 117/297 (39%), Positives = 161/297 (54%), Gaps = 33/297 (11%)
Query: 79 SIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG 138
S K LE++YVH+VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG
Sbjct: 363 SDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLG 422
Query: 139 LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198
+N + + +GCD S +L+ IC +R + V DA+ +P RS DA ISIAV+HH +T RR
Sbjct: 423 INKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERR 482
Query: 199 KKAIEELVRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGS------ 249
A++E+VR+++ G LI VWA+EQE KS + +Q EE S
Sbjct: 483 VAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRSLV 542
Query: 250 PRVRSPSAR-TLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKI 308
++R +R + S+P D S+E G +Q KL ++ T S SQDV
Sbjct: 543 EQMRDMGSRDSASSVPRIND--SQEGGCNSRQVSNSKLPVHVNRT------SFYSQDV-- 592
Query: 309 ITNQQEYFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
VPWHL + + +D + V++RYYHVF +GELE
Sbjct: 593 -------LVPWHL---KGNPDKGKPVEPFGPIGSQDP---SPVFHRYYHVFREGELE 636
>sp|Q95K79|ALKB8_MACFA Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis
GN=ALKBH8 PE=2 SV=1
Length = 664
Score = 181 bits (460), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 158/291 (54%), Gaps = 35/291 (12%)
Query: 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFF 145
LE++YVH+VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG+N + +
Sbjct: 370 LEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLGVNKELYM 429
Query: 146 VGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEEL 205
VGCD S +L+ IC +R + V DA+ +P RS DA ISIAV+HH +T RR A++E+
Sbjct: 430 VGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERRVAALQEI 489
Query: 206 VRVVKKGSLVLITVWAVEQE---DKSLVTKWTPLTQKYVEEWIGPGSPRVRS-------- 254
VR+++ G LI VWA+EQE KS K +Q EE S + RS
Sbjct: 490 VRLLRPGGKALIYVWAMEQEYNKQKSKYLKGNRNSQGKKEEMNSDTSVQ-RSLVEQMPDM 548
Query: 255 PSARTLESIPETEDNGSEEQGKEPKQSVPDKLWESISLTSQSEDDSVISQDVKIITNQQE 314
S + S+P D S+E G +Q KL ++ T S SQD+
Sbjct: 549 GSRDSASSVPRIND--SQEGGCNSRQVSNSKLPIHVNRT------SFYSQDM-------- 592
Query: 315 YFVPWHLPYHRAEVSGASACALANGLAKKDDKKGAVVYNRYYHVFCDGELE 365
VPWHL + + +D + V++RYYHVF +GELE
Sbjct: 593 -LVPWHL---KGNPDKGKPVEPFGPIGSQDP---SPVFHRYYHVFREGELE 636
>sp|P49957|TRM9_YEAST tRNA (carboxymethyluridine(34)-5-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRM9 PE=1 SV=1
Length = 279
Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 99/147 (67%), Gaps = 2/147 (1%)
Query: 80 IKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL 139
I E E++YVH+VY+ IAPHFS TR+ WP V FL + P GS+ +D GCGNGKYLG+
Sbjct: 3 INQAAEKEQEYVHKVYNEIAPHFSQTRYKPWPIVTQFLKTRPMGSIGIDVGCGNGKYLGV 62
Query: 140 NPDCFFVGCDISPSLIKIC--VDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197
NPD + +G D S LI+ ++ + +LVAD +NLP++++ D AISIAV+HH ST R
Sbjct: 63 NPDIYIIGSDRSDGLIECARGINPSYNLLVADGLNLPHKNETFDFAISIAVVHHWSTRER 122
Query: 198 RKKAIEELVRVVKKGSLVLITVWAVEQ 224
R + I ++ +++G LI WA+EQ
Sbjct: 123 RVEVIRHVLSKLRQGGQALIYCWALEQ 149
>sp|Q9P272|K1456_HUMAN Putative methyltransferase KIAA1456 OS=Homo sapiens GN=KIAA1456
PE=2 SV=3
Length = 454
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 96/145 (66%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
+LEK++VH VY++ AP+FS + WP+V FL GSL+ D GCG GKYL +N
Sbjct: 7 QLEKQHVHNVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVH 66
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
VGCD L++I +RG E +V D +NLP+R + DA ISI V+HH ST+ RR +AI+E
Sbjct: 67 TVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKE 126
Query: 205 LVRVVKKGSLVLITVWAVEQEDKSL 229
+ RV+ G ++I VWA+EQ+++
Sbjct: 127 MARVLVPGGQLMIYVWAMEQKNRHF 151
>sp|Q80WQ4|K1456_MOUSE Putative methyltransferase KIAA1456 OS=Mus musculus GN=Kiaa1456
PE=2 SV=1
Length = 447
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 95/145 (65%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
ELEK++VH VY+ AP+F+ + WP+V FL GSLV D GCG GKYL +N
Sbjct: 7 ELEKRHVHSVYENTAPYFTDLQSKAWPRVRQFLQDQKPGSLVADIGCGTGKYLKVNSQVH 66
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
+GCD L++I +RG EV+V D +NLP+R DA ISI V+HH ST+ RR +AI+E
Sbjct: 67 TLGCDYCGPLVEIARNRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKERRIRAIKE 126
Query: 205 LVRVVKKGSLVLITVWAVEQEDKSL 229
+ RV+ G ++I VWA+EQ+++
Sbjct: 127 MARVLAPGGQLMIYVWAMEQKNRRF 151
>sp|Q08DH3|K1456_BOVIN Putative methyltransferase KIAA1456 homolog OS=Bos taurus PE=2 SV=1
Length = 453
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 95/143 (66%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
+LEK++VH VY++ AP+FS + WP+V FL GSL+ D GCG GKYL +N
Sbjct: 7 QLEKQHVHDVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVH 66
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
+GCD L++I RG EV+V D +NLP+R DA ISI V+HH ST+ RR +AI+E
Sbjct: 67 TLGCDYCAPLVEIARSRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKQRRIRAIKE 126
Query: 205 LVRVVKKGSLVLITVWAVEQEDK 227
+ RV+ G ++I VWA+EQ+++
Sbjct: 127 MARVLVPGGQLMIYVWAMEQKNR 149
>sp|Q10224|TRM9_SCHPO tRNA (carboxymethyluridine(34)-5-O)-methyltransferase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm9 PE=3 SV=1
Length = 228
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 99/142 (69%), Gaps = 1/142 (0%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF 144
E E +YVH+VYD IA HFS TR+ WP V FL SLP GS+ +D GCGNGKY +NP+ +
Sbjct: 4 EYENEYVHQVYDKIATHFSDTRYKPWPVVEKFLKSLPLGSVGVDIGCGNGKYQKVNPNVY 63
Query: 145 FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
+G D L+KI + G ++++D +++P+ S+ D A+SIAV+HH S E+RR +A++E
Sbjct: 64 MIGSDRCVKLVKIASNLG-PMVISDGLHVPHPSNRFDFALSIAVIHHFSNENRRLQAVQE 122
Query: 205 LVRVVKKGSLVLITVWAVEQED 226
++R + KG L VWA+EQ++
Sbjct: 123 VLRPLVKGGKALFFVWALEQKN 144
>sp|Q8STN5|Y9F0_ENCCU Putative methyltransferase ECU09_1500 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ECU09_1500 PE=3 SV=1
Length = 225
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 77 SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFL-NSLPSGSLVLDAGCGNGK 135
S+ + E+++VHR YD + FS+TR W FL N S+VLDAGCGNG+
Sbjct: 13 SACMDDPSGFEERFVHRFYDENSREFSATRRRHWGMTRRFLDNYYTRESIVLDAGCGNGR 72
Query: 136 YLGLNPDCFFVGCDISPSLIKICVDRGHEVLV-ADAVNLPYRSDFGDAAISIAVLHHLST 194
L P C VG D L+ G + LV D + LP+ D +S+AV+HHLST
Sbjct: 73 SF-LVP-CM-VGMDYCLGLLNDARAAGGQGLVRGDVLELPFVDCSFDLVLSVAVIHHLST 129
Query: 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLT-QKYVEEW 244
RR++A++E+ RV+K G +L+ VW + K ++ + Q Y+ W
Sbjct: 130 RCRRERAMKEMRRVLKDGGKMLLYVWGSSAKSKRKFSRAAGGSEQDYLATW 180
>sp|C4V9L5|Y1265_NOSCE Putative methyltransferase NCER_101265 OS=Nosema ceranae (strain
BRL01) GN=NCER_101265 PE=3 SV=1
Length = 244
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 41/184 (22%)
Query: 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPS-GSLVLDAGCGNGKYLGLNPDC 143
E E YVH+ Y A F TR+ WPK+++FL G L LDAGCGNG+ L
Sbjct: 4 EYEDAYVHKFYSKYAKKFDVTRYKTWPKISSFLKVYDKPGFLNLDAGCGNGRNLPRTGGV 63
Query: 144 FFVGCDISPSLIKICVDR---------------------------------------GHE 164
++G D S L+ VD+
Sbjct: 64 -WIGLDYSKELLNCIVDKYCKVNDQKDLDCGTLSKKNICKSELKYSLVHKSSSTPHVSFN 122
Query: 165 VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224
++ D + LP+ S+ D +SIAV+HH ST RR +A++E+ RV+K +L+ VW E
Sbjct: 123 LIRGDCLCLPFNSNTFDIILSIAVIHHFSTPERRTQALQEMHRVLKPTGRILLYVWNEET 182
Query: 225 EDKS 228
+ +S
Sbjct: 183 KFQS 186
>sp|Q58648|Y1252_METJA Uncharacterized protein MJ1252 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1252 PE=4 SV=1
Length = 251
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 11/138 (7%)
Query: 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVA---TFLNSLPSGSLVLDAGCGNGKYLGLNPDC 143
EK + YD +A + K+ ++ + G VLD GCG G+ L + +
Sbjct: 17 EKMGIKEYYDKLAKSYDKLYKNKYMRIVEREIIQKEIKDGDFVLDIGCGTGEQLKILNNA 76
Query: 144 FFVGCDISPSLIKICVDRGHE-VLVADAVNLPYRSDFGDAAIS-IAVLHHLSTESRRKKA 201
VG DIS + KI ++ ++ V+VA+A LP+++ D AIS L+H + K+A
Sbjct: 77 --VGLDISLEMAKIAKNKTNKPVVVANAEFLPFKNKSFDKAISFFGALNHCNL----KRA 130
Query: 202 IEELVRVVKKGSLVLITV 219
+ E+ RV+K + + TV
Sbjct: 131 LREVNRVLKDDGIFIFTV 148
>sp|Q58055|Y638_METJA Uncharacterized protein MJ0638 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0638 PE=4 SV=1
Length = 225
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 125 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAI 184
LVLD GCG G + L D + DIS +L+K + ++ A+ ++LP++ + D +
Sbjct: 49 LVLDCGCGFGAFYNLTKDFNTIYLDISLNLLKRFKLKERKI-CANILHLPFKDNTFDLVL 107
Query: 185 SIAVLHHLSTESRRKKAIEELVRVVK-KGSLVLITV 219
I VL H++ KA+ E+ R++K KG L+++ V
Sbjct: 108 CINVLEHVNYL----KALNEIRRILKNKGKLIVVVV 139
>sp|Q55DA6|WBS22_DICDI Probable methyltransferase WBSCR22 homolog OS=Dictyostelium
discoideum GN=DDB_G0269722 PE=3 SV=1
Length = 287
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 71 EDQRCSSSSIKSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAG 130
E ++ SS+S E++ K R Y+ +A P+ A G ++LD G
Sbjct: 18 ESKKYSSNS--RIIEIQTKMAERAYELLA----------IPETA-------EGLMLLDIG 58
Query: 131 CGNGKYLGLNPDC--FFVGCDISPSLIKICVDRGHE--VLVAD-AVNLPYRSDFGDAAIS 185
CG+G + D +++GCDIS ++ + +DR E V++ D P+R+ DAAIS
Sbjct: 59 CGSGISGDVITDAGHYWIGCDISQHMLDVAIDREVEGDVMLRDIGQGFPFRAGSFDAAIS 118
Query: 186 IAVLH--------HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVT 231
I+ + H + R + L V+ +G ++ + ++T
Sbjct: 119 ISAIQWLCNAEKSHHNPRKRLHTFFQSLFNVLTRGGKAILQFYPENSAQIEMIT 172
>sp|A5UVB2|UBIE_ROSS1 Demethylmenaquinone methyltransferase OS=Roseiflexus sp. (strain
RS-1) GN=ubiE PE=3 SV=1
Length = 238
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 77 SSSIKSTPELEKKYVHRVYDAIAPHFSSTRFA-------KWPKVATFLNSLPSGSLVLDA 129
S+++ P+ + +YV R++ IAP + + +W L + PS LD
Sbjct: 2 STTVLPPPDKKAEYVERMFSRIAPGYDTMNGIITLGLDREWRATTVALAAPPSCGRALDI 61
Query: 130 GCGNGKYL----GLNPDCFFVGCDISPSLIKICV----DRGHEVLVADAVNLPYRSDFGD 181
G G G +L PD VG D + +++ + DR + DA+ LP+ + D
Sbjct: 62 GTGTGDFLVELTAWMPDGLAVGVDFTVPMMRAGLPKIRDRRAVFVAGDALKLPFADESFD 121
Query: 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 215
A + L +++ + A E+ RV + G+ V
Sbjct: 122 AITTGFTLRNVTDIA---AAFREMWRVARVGATV 152
>sp|A4G5P1|BIOC_HERAR Malonyl-CoA O-methyltransferase BioC OS=Herminiimonas
arsenicoxydans GN=bioC PE=3 SV=1
Length = 260
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLN----PDCFFVGCDI 150
YDAIA F A+ +A L ++P+ + VLD GCG G L PD + CD+
Sbjct: 20 YDAIAG-FQQQVAAR---LAQLLPAIPA-TCVLDGGCGTGTSSALLTRHWPDALLLACDL 74
Query: 151 SPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVK 210
SP +++ R + D LP+ D S VL + A EL RV+K
Sbjct: 75 SPEMVRQAHARQLTAVCGDLEQLPFSKACFDVVWSSLVLQWCQPQ----LAYPELQRVLK 130
Query: 211 KGSLVLITV 219
G +L +
Sbjct: 131 HGGRLLFST 139
>sp|P25627|BUD23_YEAST Putative methyltransferase BUD23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BUD23 PE=1 SV=1
Length = 275
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 108 AKWPKVATFLNSLPSGSLVLDAGCG---NGKYLGLNPDCFFVGCDISPSLIKICVDR--- 161
AK A L +L S +LD GCG +G+ L D + G DISPS++ + R
Sbjct: 33 AKMTLRALELLNLQPCSFILDIGCGSGLSGEILTQEGDHVWCGLDISPSMLATGLSRELE 92
Query: 162 GHEVLVADAVNLPYRSDFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVW 220
G +L +P+R+ DAAISI+ + L + ++ + L+R T++
Sbjct: 93 GDLMLQDMGTGIPFRAGSFDAAISISAIQWLCNADTSYNDPKQRLMRFFN-------TLY 145
Query: 221 AVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269
A ++ V ++ P V++ + S +V S + PE++ N
Sbjct: 146 AALKKGGKFVAQFYPKNDDQVDDIL--QSAKVAGFSGGLVVDDPESKKN 192
>sp|Q9CD86|PHMT_MYCLE Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase
OS=Mycobacterium leprae (strain TN) GN=ML0130 PE=3 SV=1
Length = 270
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 122 SGSLVLDAGCGNG---KYL--GLNPDCFFVGCDISPSLIKICVDR----GHEVLVADAVN 172
SG +L+ CG+G YL L+P + G D++P+ IK+C R G E + DA N
Sbjct: 80 SGKRILEVSCGHGGGASYLTRALHPASY-TGLDLNPAGIKLCQKRHQLPGLEFVRGDAEN 138
Query: 173 LPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212
LP+ ++ D I+I H R + E+VRV++ G
Sbjct: 139 LPFDNESFDVVINIEASHCYPHFPR---FLAEVVRVLRPG 175
>sp|A1R990|UBIE_ARTAT Demethylmenaquinone methyltransferase OS=Arthrobacter aurescens
(strain TC1) GN=ubiE PE=3 SV=1
Length = 253
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGK----YLGLNPDCFFVGCDI 150
YD + S + +W ++ + G VLD G G Y D V CD
Sbjct: 24 YDVVNDVLSMGQTRRWRRIVVDAMDVKVGQKVLDLAAGTGTSSEPYADAGVDV--VACDF 81
Query: 151 SPSLIKICVDRGHEV--LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRV 208
S ++K+ R ++ + DA NLP+ + DA+ + L +KA+EE++RV
Sbjct: 82 SLGMLKVGKRRRPDIDFIAGDATNLPFADNSFDAS---TISFGLRNVVEPRKALEEMLRV 138
Query: 209 VKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYV 241
K G ++I ++ +V W L +Y+
Sbjct: 139 TKPGGRLVIAEFS-----HPVVPLWRNLYTEYL 166
>sp|Q8KZ94|REBMT_NOCAE Demethylrebeccamycin-D-glucose O-methyltransferase OS=Lechevalieria
aerocolonigenes GN=rebM PE=1 SV=1
Length = 283
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 117 LNSLPSGSLVLDAGCGNGK---YLGLNPDCFFVGCDISPSLIKICVDRGHEVLVA----- 168
L + SG VLD GCG GK L D G IS + R +A
Sbjct: 66 LLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTF 125
Query: 169 ---DAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
DA++LP+ DA ++ LHH+ R +A+ E+ RV++ G V I
Sbjct: 126 SYADAMDLPFEDASFDAVWALESLHHMPD---RGRALREMARVLRPGGTVAI 174
>sp|Q67LE6|UBIE_SYMTH Demethylmenaquinone methyltransferase OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ubiE PE=3 SV=1
Length = 251
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 23/151 (15%)
Query: 83 TPELEKKYVHRVYDAIAPHF-------SSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGK 135
+PE +++YV ++D IA ++ S+ ++ KW + G +LD CG G
Sbjct: 9 SPEEKEQYVRELFDKIAENYDAMNQVMSAGQWEKWHREFVAQTHFRPGDHILDVACGTGD 68
Query: 136 YLGLN-----PDCFFVGCDISPSLIKICVDRGH--------EVLVADAVNLPYRSDFGDA 182
L+ PD +G DIS ++++ R + + +A++LP+ + D
Sbjct: 69 LTLLDAAQVAPDGKVIGVDISEGMLEVGRRRVAASPYKDLITLQLGNAMDLPFPDNTFDG 128
Query: 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGS 213
+ ++++ R + E+ RV+K G
Sbjct: 129 VTMGWAMRNVASIPR---TLSEIYRVLKPGG 156
>sp|O43709|WBS22_HUMAN Uncharacterized methyltransferase WBSCR22 OS=Homo sapiens
GN=WBSCR22 PE=1 SV=2
Length = 281
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 126 VLDAGCG---NGKYLGLNPDCFFVGCDISPSLIKICVDRGHE--VLVAD-AVNLPYRSDF 179
+LD GCG +G YL + ++VG DISP+++ VDR E +L+ D +P++
Sbjct: 57 LLDIGCGTGLSGSYLS-DEGHYWVGLDISPAMLDEAVDREIEGDLLLGDMGQGIPFKPGT 115
Query: 180 GDAAISIAVLHHLSTESRRKKA--------IEELVRVVKKGSLVLITVWAVEQEDKSLVT 231
D ISI+ + L +++ + L V+ +GS ++ ++ E L+T
Sbjct: 116 FDGCISISAVQWLCNANKKSENPAKRLYCFFASLFSVLVRGSRAVLQLYPENSEQLELIT 175
>sp|Q4ZZG3|UBIE_PSEU2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas syringae pv. syringae (strain B728a)
GN=ubiE PE=3 SV=1
Length = 256
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 31/175 (17%)
Query: 71 EDQRCSSSS-------IKSTPELEK-----KYVHRV---YDAIAPHFSSTRFAKWPKVAT 115
DQR S + K+ PE +K + H V YD + S W + A
Sbjct: 2 NDQRKGSDAEPTTHFGYKNVPESQKAEKVAEVFHSVAAKYDLMNDLLSGGMHRLWKRFAI 61
Query: 116 FLNSLPSGSLVLDAGCGNG----KYLGL-NPDCFFVGCDISPSLIKICVDR--------G 162
L+ + +G+ VLD G G K+ L P V DI+ S++K+ DR
Sbjct: 62 ELSGVRTGNRVLDIAGGTGDLTRKFSNLVGPTGQVVLADINASMLKVGRDRLLDLGVSGN 121
Query: 163 HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
E + ADA LP+ + D + + L + ++ A+ ++RV+K G +L+
Sbjct: 122 VEFVQADAEKLPFPDNHFDC---VTIAFGLRNVTHKEDALRSMLRVLKPGGRLLV 173
>sp|Q48PJ4|UBIE_PSE14 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6) GN=ubiE PE=3 SV=1
Length = 256
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 31/175 (17%)
Query: 71 EDQRCSSSS-------IKSTPELEK-----KYVHRV---YDAIAPHFSSTRFAKWPKVAT 115
DQR S + K+ PE +K + H V YD + S W + A
Sbjct: 2 NDQRKGSDAEPTTHFGYKNVPESQKAEKVAEVFHSVAAKYDLMNDLLSGGMHRLWKRFAI 61
Query: 116 FLNSLPSGSLVLDAGCGNG----KYLGL-NPDCFFVGCDISPSLIKICVDR--------G 162
L+ + +G+ VLD G G K+ L P V DI+ S++K+ DR
Sbjct: 62 ELSGVRTGNRVLDIAGGTGDLTRKFSNLVGPTGQVVLADINASMLKVGRDRLLDLGVSGN 121
Query: 163 HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
E + ADA LP+ + D + + L + ++ A+ ++RV+K G +L+
Sbjct: 122 VEFVQADAEKLPFPDNHFDC---VTIAFGLRNVTHKEDALRSMLRVLKPGGRLLV 173
>sp|Q87UZ2|UBIE_PSESM Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas syringae pv. tomato (strain DC3000)
GN=ubiE PE=3 SV=1
Length = 256
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 31/175 (17%)
Query: 71 EDQRCSSSS-------IKSTPELEK-----KYVHRV---YDAIAPHFSSTRFAKWPKVAT 115
DQR S + K+ PE +K + H V YD + S W + A
Sbjct: 2 NDQRKGSDAEPTTHFGYKNVPESQKAEKVAEVFHSVAAKYDLMNDLLSGGMHRLWKRFAI 61
Query: 116 FLNSLPSGSLVLDAGCGNG----KYLGL-NPDCFFVGCDISPSLIKICVDR--------G 162
L+ + +G+ VLD G G K+ L P V DI+ S++K+ DR
Sbjct: 62 ELSGVRTGNRVLDIAGGTGDLTRKFSNLVGPTGQVVLADINASMLKVGRDRLLDLGVSGN 121
Query: 163 HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
E + ADA LP+ + D + + L + ++ A+ ++RV+K G +L+
Sbjct: 122 VEFVQADAEKLPFPDNHFDC---VTIAFGLRNVTHKEDALRSMLRVLKPGGRLLV 173
>sp|Q9CY21|WBS22_MOUSE Uncharacterized methyltransferase WBSCR22 OS=Mus musculus
GN=Wbscr22 PE=2 SV=1
Length = 281
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 109 KWPKVATFLNSLPSG--SLVLDAGCGNG---KYLGLNPDCFFVGCDISPSLIKICVDRGH 163
K + A L LP G S +LD GCG+G Y+ ++VG DISP+++ +DR
Sbjct: 38 KMTERALELLCLPEGQPSYLLDIGCGSGLSGDYIS-EEGHYWVGIDISPAMLDAALDRDT 96
Query: 164 E--VLVAD-AVNLPYRSDFGDAAISIAVLHHLSTESRRKKA--------IEELVRVVKKG 212
E +L+ D +P+R D ISI+ + L +++ L + +G
Sbjct: 97 EGDLLLGDMGQGVPFRPGSFDGCISISAVQWLCNANKKSDVPARRLYCFFSSLYSALVRG 156
Query: 213 SLVLITVWAVEQEDKSLVT 231
+ ++ ++ E L+T
Sbjct: 157 ARAVLQLYPENSEQLELIT 175
>sp|Q3KJC5|UBIE_PSEPF Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas fluorescens (strain Pf0-1) GN=ubiE PE=3
SV=1
Length = 256
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 31/174 (17%)
Query: 72 DQRCSSSS-------IKSTPELEK-----KYVHRV---YDAIAPHFSSTRFAKWPKVATF 116
DQR S + K+ PE +K + H V YD + S W + A
Sbjct: 3 DQRKGSDAEPTTHFGFKNVPESQKAEKVAEVFHSVAAKYDLMNDLLSGGMHRLWKRFAIE 62
Query: 117 LNSLPSGSLVLDAGCGNG----KYLGL-NPDCFFVGCDISPSLIKICVDRGHEVLV---- 167
L+ + +G+ VLD G G K+ L P V DI+ S++K+ DR +V V
Sbjct: 63 LSGVRAGNRVLDIAGGTGDLTKKFSHLVGPTGQVVLADINESMLKVGRDRLLDVGVSGNV 122
Query: 168 ----ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
ADA LP+ + D + + L + ++ A+ ++RV+K G +L+
Sbjct: 123 EFVQADAEKLPFPDNHFDC---VTIAFGLRNVTHKEDALRSMLRVLKPGGRLLV 173
>sp|B1J2S8|UBIE_PSEPW Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas putida (strain W619) GN=ubiE PE=3 SV=1
Length = 256
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCD 149
YD + S W + L+ + SG+ VLD G G + P V D
Sbjct: 41 YDLMNDVLSGGMHRLWKRFTIELSGVRSGNRVLDIAGGTGDLAAKFSRLVGPTGQVVLAD 100
Query: 150 ISPSLIKI----CVDRG----HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
I+ S++K+ +DRG E + ADA LP+ + D + + L + + +A
Sbjct: 101 INDSMLKVGRDRLLDRGVAGNIEFVQADAEKLPFPDNHFDC---VTIAFGLRNVTHKDEA 157
Query: 202 IEELVRVVKKGSLVLI 217
I ++RV+K G +LI
Sbjct: 158 IRSMLRVLKPGGRLLI 173
>sp|B0KM36|UBIE_PSEPG Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas putida (strain GB-1) GN=ubiE PE=3 SV=1
Length = 256
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCD 149
YD + S W + L+ + SG+ VLD G G + P V D
Sbjct: 41 YDLMNDVLSGGMHRLWKRFTIELSGVRSGNRVLDIAGGTGDLAAKFSRLVGPTGQVVLAD 100
Query: 150 ISPSLIKI----CVDRG----HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
I+ S++K+ +DRG E + ADA LP+ + D + + L + + +A
Sbjct: 101 INDSMLKVGRDRLLDRGVAGNIEFVQADAEKLPFPDNHFDC---VTIAFGLRNVTHKDEA 157
Query: 202 IEELVRVVKKGSLVLI 217
I ++RV+K G +LI
Sbjct: 158 IRSMLRVLKPGGRLLI 173
>sp|O66128|UBIE_MICLU Demethylmenaquinone methyltransferase OS=Micrococcus luteus GN=ubiE
PE=3 SV=1
Length = 246
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCD 149
YD + S + W K ++ GS LD CG G + + + +G D
Sbjct: 31 YDRLNDIISFNQHKSWRKYTMKQMNVKKGSKALDVCCGTGDWTIQMAQAVGKNGHVIGLD 90
Query: 150 ISPSLIKICVDRGH-----EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEE 204
S +++ + + + E++ +A+ LP+ + D L +L KK +EE
Sbjct: 91 FSENMLSVAQGKTNHIQNIELIHGNAMELPFEDNIFDYTTIGFGLRNLPD---YKKGLEE 147
Query: 205 LVRVVKKGSLVLI 217
+ RV+K G ++++
Sbjct: 148 MYRVLKPGGMIVV 160
>sp|Q58523|Y1123_METJA Uncharacterized protein MJ1123 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1123 PE=4 SV=1
Length = 205
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 120 LPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDF 179
+P G L+ G G G++ P +G DIS + KI RG +V++A +LP++ +
Sbjct: 33 IPKGR-GLEIGVGTGRFA--KPFNIKIGVDISKEMAKIAEKRGIKVIIAKGEDLPFKDEE 89
Query: 180 GDAAISIAVLHHLSTESRRKKAIEELVRVV 209
D + VL KK IEE RV+
Sbjct: 90 FDFFLINTVLEFAENP---KKMIEEAKRVL 116
>sp|Q1I3T0|UBIE_PSEE4 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas entomophila (strain L48) GN=ubiE PE=3
SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCD 149
YD + S W + L+ + SG+ VLD G G + P V D
Sbjct: 41 YDLMNDVLSGGMHRLWKRFTIELSGVRSGNRVLDIAGGTGDLAAKFSRLVGPTGQVVLAD 100
Query: 150 ISPSLIKI----CVDRG----HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
I+ S++K+ +DRG E + ADA LP+ + D + + L + + +A
Sbjct: 101 INESMLKVGRDRLLDRGVAGNIEFVQADAEKLPFPDNHFDC---VTIAFGLRNVTHKDEA 157
Query: 202 IEELVRVVKKGSLVLI 217
I ++RV+K G +L+
Sbjct: 158 IRSMLRVLKPGGRLLV 173
>sp|C3K8U4|UBIE_PSEFS Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas fluorescens (strain SBW25) GN=ubiE PE=3
SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 31/174 (17%)
Query: 72 DQRCSSSS-------IKSTPELEK-----KYVHRV---YDAIAPHFSSTRFAKWPKVATF 116
DQR S + K+ PE +K + H V YD + S W +
Sbjct: 3 DQRKGSDAEPTTHFGFKNVPESQKAEKVAEVFHSVAAKYDLMNDVLSGGMHRLWKRFTIE 62
Query: 117 LNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GH 163
L+ + +G+ VLD G G + P V DI+ S++K+ DR
Sbjct: 63 LSGVRTGNRVLDIAGGTGDLAAKFSKLVGPTGQVVLADINGSMLKVGRDRLLDKGVAGNI 122
Query: 164 EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
E + ADA LP+ + D + + L + ++ AI ++RV+K G +L+
Sbjct: 123 EFVQADAEKLPFPDNHFDC---VTIAFGLRNVTHKEDAIRSMLRVLKPGGRLLV 173
>sp|C4LL93|UBIE_CORK4 Demethylmenaquinone methyltransferase OS=Corynebacterium
kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=ubiE
PE=3 SV=1
Length = 229
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 81 KSTPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATF--------LNSLPSGSLV-LDAGC 131
++T E + + V R++DA+ + T + T L+ P +V L AG
Sbjct: 3 RATLEKKPREVARMFDAVGKKYDLTNTVLTGGIDTLWRKATRKRLDPKPGEKVVDLAAGT 62
Query: 132 GNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAA-ISIAVLH 190
G VGCD S ++K R ++ D +NLP+ + DAA IS + +
Sbjct: 63 GVSTAELSKSGALVVGCDFSLGMLKAGRHRNVPLVAGDGLNLPFADNTFDAATISFGLRN 122
Query: 191 HLSTESRRKKAIEELVRVVKKGSLVLI 217
T + + E+ RVVK G + +
Sbjct: 123 FGDTAA----GLREIARVVKPGGRLTV 145
>sp|Q88D17|UBIE_PSEPK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas putida (strain KT2440) GN=ubiE PE=3 SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCD 149
YD + S W + L+ + SG+ VLD G G + P V D
Sbjct: 41 YDLMNDVLSGGMHRLWKRFTIELSGVRSGNRVLDIAGGTGDLAAKFSRLVGPTGQVVLAD 100
Query: 150 ISPSLIKI----CVDRG----HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
I+ S++K+ +DRG E + ADA LP+ + D + + L + + A
Sbjct: 101 INDSMLKVGRDRLLDRGVAGNIEFVQADAEKLPFPDNHFDC---VTIAFGLRNVTHKDAA 157
Query: 202 IEELVRVVKKGSLVLI 217
I ++RV+K G +LI
Sbjct: 158 IRSMLRVLKPGGRLLI 173
>sp|A5WA45|UBIE_PSEP1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ubiE
PE=3 SV=1
Length = 256
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCD 149
YD + S W + L+ + SG+ VLD G G + P V D
Sbjct: 41 YDLMNDVLSGGMHRLWKRFTIELSGVRSGNRVLDIAGGTGDLAAKFSRLVGPTGQVVLAD 100
Query: 150 ISPSLIKI----CVDRG----HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
I+ S++K+ +DRG E + ADA LP+ + D + + L + + A
Sbjct: 101 INDSMLKVGRDRLLDRGVAGNIEFVQADAEKLPFPDNHFDC---VTIAFGLRNVTHKDAA 157
Query: 202 IEELVRVVKKGSLVLI 217
I ++RV+K G +LI
Sbjct: 158 IRSMLRVLKPGGRLLI 173
>sp|Q58DP0|WBS22_BOVIN Uncharacterized methyltransferase WBSCR22 OS=Bos taurus GN=WBSCR22
PE=2 SV=1
Length = 281
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 126 VLDAGCG---NGKYLGLNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDF 179
VLD GCG +G YL + ++VG DISP+++ +DR G +L +P++
Sbjct: 57 VLDIGCGTGLSGDYLS-DEGHYWVGIDISPAMLDEALDRETQGDVILGDMGQGIPFKPGT 115
Query: 180 GDAAISIAVLHHLSTESRRKKA--------IEELVRVVKKGSLVLITVWAVEQEDKSLVT 231
DA ISI+ + L +++ L V+ +G ++ ++ E L+T
Sbjct: 116 FDACISISAVQWLCNANKKSDIPAKRLYCFFSSLYSVLVRGGRAVLQLYPENSEQLELIT 175
>sp|Q10162|YAU6_SCHPO Putative methyltransferase C26A3.06 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC26A3.06 PE=4 SV=1
Length = 268
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 124 SLVLDAGCGNG--KYLGLNPDCFFVGCDISPSLIKICVD----RGHEVLVADAVNLPYRS 177
S +LD GCG+G +G + VG DISPS++ + ++ G +L +P+R
Sbjct: 49 SFILDIGCGSGISTQIGESQGHVVVGMDISPSMLSVALESQEIEGDLLLCDMGTGVPFRP 108
Query: 178 DFGDAAISIAVLHHLST--------ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229
D ISI+ + L + R + + L +K+G ++ + ++ + +
Sbjct: 109 GTFDGVISISAIQWLLNADKTCNVPQRRLNRFFQTLYISMKRGGRAVMQYYPETEKSQQM 168
Query: 230 V 230
+
Sbjct: 169 I 169
>sp|Q2SJW1|CMOB_HAHCH tRNA (mo5U34)-methyltransferase OS=Hahella chejuensis (strain KCTC
2396) GN=cmoB PE=3 SV=1
Length = 324
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNG----KYLGLNPDCFFVGCDISPSLIKI--CVDRG 162
KW +VA L+ L G VLD GCG+G + LG F +G D SP + CV +
Sbjct: 111 KWTRVAPHLSPL-KGRFVLDVGCGSGYHCWRMLGEGAQ-FVLGVDPSPKFLFQFHCVKKY 168
Query: 163 HEV-----LVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217
L + +LP D D S+ VL+H + I+EL ++ G +++
Sbjct: 169 APTAPVYYLPLRSEDLPPNMDAFDTVFSMGVLYHRRSPF---DHIDELKAALRPGGELVL 225
Query: 218 TVWAVEQEDKSLVT 231
V ++ +++T
Sbjct: 226 ETLIVPGDENTVLT 239
>sp|Q9Z439|UBIE_PSEPU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
OS=Pseudomonas putida GN=ubiE PE=3 SV=1
Length = 256
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 95 YDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCD 149
YD + S W + L+ + +G+ VLD G G + P V D
Sbjct: 41 YDLMNDVLSGGMHRLWKRFTIELSGVRAGNRVLDIAGGTGDLAAKFSRLVGPTGQVVLAD 100
Query: 150 ISPSLIKI----CVDRG----HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKA 201
I+ S++K+ +DRG E + ADA LP+ + D + + L + + +A
Sbjct: 101 INESMLKVGRDRLLDRGVAGNIEFVQADAEKLPFPDNHFDC---VTIAFGLRNVTHKDEA 157
Query: 202 IEELVRVVKKGSLVLI 217
I ++RV+K G +L+
Sbjct: 158 IRSMLRVLKPGGRLLV 173
>sp|Q5N4X9|UBIE_SYNP6 Demethylmenaquinone methyltransferase OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ubiE PE=3 SV=1
Length = 233
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 29/171 (16%)
Query: 94 VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF-----FVGC 148
+YD + S W ++A ++ G VLD CG+G L +G
Sbjct: 19 IYDNLNDQLSFGLHRLWKRMAVKWSAAKPGDRVLDLCCGSGDLAFLLAKVVGSKGQVIGF 78
Query: 149 DISPSLIKICVDRGHEVLVA--------DAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200
D S +L+ + DR ++ A DA++LP+ D DAA + + L
Sbjct: 79 DRSQALLSVAGDRARQLASALVIDWQRGDALDLPFPDDHFDAA---TLGYGLRNVPDIPT 135
Query: 201 AIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPL----TQKYVEEWIGP 247
+ +L RV+K G+ I + ++PL Q Y++ W+ P
Sbjct: 136 VLRQLQRVLKPGARAAIL---------DMHRPYSPLLRQFQQVYLDRWVVP 177
>sp|Q31P90|UBIE_SYNE7 Demethylmenaquinone methyltransferase OS=Synechococcus elongatus
(strain PCC 7942) GN=ubiE PE=3 SV=1
Length = 233
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 29/171 (16%)
Query: 94 VYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCF-----FVGC 148
+YD + S W ++A ++ G VLD CG+G L +G
Sbjct: 19 IYDNLNDQLSFGLHRLWKRMAVKWSAAKPGDRVLDLCCGSGDLAFLLAKVVGSKGQVIGF 78
Query: 149 DISPSLIKICVDRGHEVLVA--------DAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200
D S +L+ + DR ++ A DA++LP+ D DAA + + L
Sbjct: 79 DRSQALLSVAGDRARQLASALVIDWQRGDALDLPFPDDHFDAA---TLGYGLRNVPDIPT 135
Query: 201 AIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPL----TQKYVEEWIGP 247
+ +L RV+K G+ I + ++PL Q Y++ W+ P
Sbjct: 136 VLRQLQRVLKPGARAAIL---------DMHRPYSPLLRQFQQVYLDRWVVP 177
>sp|B1J4E4|CMOB_PSEPW tRNA (mo5U34)-methyltransferase OS=Pseudomonas putida (strain W619)
GN=cmoB PE=3 SV=1
Length = 318
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 28/139 (20%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDRGHE 164
KW +VA L+ G VLD GCGNG Y LG D +G D P+ + C + +
Sbjct: 107 KWSRVAPHLDL--QGKRVLDVGCGNGYYQWRMLGAGAD-MVIGVD--PNWLFFCQFQAVQ 161
Query: 165 VLVAD--AVNLPY-------RSDFGDAAISIAVLHHLSTESRRKKAIEELVR----VVKK 211
+ D A +LP+ + D S+ V +H R+ IE L+ +VK
Sbjct: 162 RYLPDLPAWHLPFALEELPANLEGFDTVFSMGVFYH------RRSPIEHLLALKDCLVKG 215
Query: 212 GSLVLITVWAVEQEDKSLV 230
G LVL T+ E + LV
Sbjct: 216 GELVLETLVVEGDEQQVLV 234
>sp|A8AFH0|CMOB_CITK8 tRNA (mo5U34)-methyltransferase OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=cmoB PE=3 SV=1
Length = 322
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 25/138 (18%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL------------GLNPDCFFVGCDISPSLIK 156
KW +V L+ L +G +LD GCG+G ++ G++P F+ C
Sbjct: 109 KWDRVLPHLSDL-TGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFL-CQFEAVRKL 166
Query: 157 ICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELV----RVVKKG 212
+ D+ +L LP + F D S+ VL+H R+ +E L ++VK G
Sbjct: 167 LGNDQRAHLLPLGIEQLPALNTF-DTVFSMGVLYH------RRSPLEHLWQLKDQLVKDG 219
Query: 213 SLVLITVWAVEQEDKSLV 230
LVL T+ E+ LV
Sbjct: 220 ELVLETLVVEGDENTVLV 237
>sp|Q5R0Q5|CMOB_IDILO tRNA (mo5U34)-methyltransferase OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=cmoB PE=3 SV=1
Length = 323
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL------------GLNP-DCFFVGCDISPSLI 155
KW +VA L+ L SG VLD GCG+G +L G++P + F + L+
Sbjct: 109 KWQRVAPHLDDL-SGRQVLDVGCGSGYHLWRMLEAGAEQVWGIDPGELFLMQFRAISQLM 167
Query: 156 KICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 215
+ + ++P F D S+ VL+H + + ++ L+R G LV
Sbjct: 168 PLSWQQRAHFFPVGIEHMPELKSF-DTVFSMGVLYHRRSPVEFLQQLKSLIR--PGGQLV 224
Query: 216 LITV 219
L T+
Sbjct: 225 LETI 228
>sp|B0KV20|CMOB_PSEPG tRNA (mo5U34)-methyltransferase OS=Pseudomonas putida (strain GB-1)
GN=cmoB PE=3 SV=1
Length = 318
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 28/139 (20%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDRGHE 164
KW +V+ LN G VLD GCGNG Y LG D +G D P+ + C + +
Sbjct: 107 KWSRVSPHLNL--KGKRVLDVGCGNGYYQWRMLGAGAD-MVIGVD--PNWLFFCQFQAVQ 161
Query: 165 VLVADAV---------NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVR----VVKK 211
+ + +LP + D S+ V +H R+ IE L+ +VK
Sbjct: 162 QYLPELPAWHLPFALEDLPANLEGFDTVFSMGVFYH------RRSPIEHLLALKDCLVKG 215
Query: 212 GSLVLITVWAVEQEDKSLV 230
G LVL T+ E++ LV
Sbjct: 216 GELVLETLVIEGDENQVLV 234
>sp|P08442|Y1184_SYNP6 Uncharacterized protein syc1184_c OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=syc1184_c PE=4 SV=1
Length = 417
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 126 VLDAGCGNG---KYLG-LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGD 181
+LDAGCG G YL LNP DIS + + +R VAD ++ S +
Sbjct: 75 ILDAGCGTGVSTDYLAHLNPSAEITAIDISAGTLAVAQERCQRSGVADRIHFQQLSLYDV 134
Query: 182 AAIS--------IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221
A + + VLHHL R + L + G ++ I V+A
Sbjct: 135 AQLPGEFDQINCVGVLHHLEDPDR---GLAALASKLAPGGILHIFVYA 179
>sp|Q87XG5|CMOB_PSESM tRNA (mo5U34)-methyltransferase OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=cmoB PE=3 SV=1
Length = 319
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 28/128 (21%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDRGHE 164
KW +V+ L+ G VLD GCGNG Y LG D +G D P+ + C + +
Sbjct: 107 KWSRVSPHLDL--KGKRVLDVGCGNGYYQWRMLGAGADS-VIGVD--PNWLFFCQFQAMQ 161
Query: 165 VLVADAV---------NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVR----VVKK 211
+ D +LP + D S+ VL+H RK I+ L+ +VK
Sbjct: 162 RYLPDLPAWHLPFALEDLPANLEGFDTVFSMGVLYH------RKSPIDHLLALKDCLVKG 215
Query: 212 GSLVLITV 219
G LV+ T+
Sbjct: 216 GELVMETL 223
>sp|Q48EV7|CMOB_PSE14 tRNA (mo5U34)-methyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=cmoB PE=3 SV=1
Length = 319
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 28/128 (21%)
Query: 109 KWPKVATFLNSLPSGSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDRGHE 164
KW +V+ L+ G VLD GCGNG Y LG D +G D P+ + C + +
Sbjct: 107 KWSRVSPHLDL--KGKRVLDVGCGNGYYQWRMLGAGADS-VIGVD--PNWLFFCQFQAMQ 161
Query: 165 VLVADAV---------NLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVR----VVKK 211
+ D +LP + D S+ VL+H RK I+ L+ +VK
Sbjct: 162 RYLPDLPAWHLPFALEDLPANLEGFDTVFSMGVLYH------RKSPIDHLLALKDCLVKG 215
Query: 212 GSLVLITV 219
G LV+ T+
Sbjct: 216 GELVMETL 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,059,781
Number of Sequences: 539616
Number of extensions: 6240426
Number of successful extensions: 18952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 238
Number of HSP's that attempted gapping in prelim test: 18879
Number of HSP's gapped (non-prelim): 266
length of query: 377
length of database: 191,569,459
effective HSP length: 119
effective length of query: 258
effective length of database: 127,355,155
effective search space: 32857629990
effective search space used: 32857629990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)