Query 017080
Match_columns 377
No_of_seqs 457 out of 2944
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1331 Predicted methyltransf 99.9 9.3E-26 2E-30 203.1 11.9 147 83-229 6-153 (293)
2 PF01209 Ubie_methyltran: ubiE 99.9 1.9E-25 4.2E-30 202.8 10.0 186 86-274 4-215 (233)
3 COG2226 UbiE Methylase involve 99.9 7.3E-25 1.6E-29 197.2 13.2 180 87-274 9-219 (238)
4 PLN02233 ubiquinone biosynthes 99.9 7.5E-23 1.6E-27 189.6 14.2 179 88-274 32-243 (261)
5 KOG1540 Ubiquinone biosynthesi 99.9 3.4E-22 7.4E-27 176.6 14.4 206 66-274 36-276 (296)
6 PLN02396 hexaprenyldihydroxybe 99.8 2.3E-19 5E-24 170.0 17.2 145 122-275 131-285 (322)
7 TIGR02752 MenG_heptapren 2-hep 99.8 5.6E-20 1.2E-24 167.6 12.0 178 88-274 4-213 (231)
8 PRK10258 biotin biosynthesis p 99.8 1.8E-19 3.9E-24 166.4 13.7 185 86-286 4-194 (251)
9 PF13489 Methyltransf_23: Meth 99.8 3.9E-20 8.5E-25 158.5 8.4 153 104-274 3-158 (161)
10 PRK14103 trans-aconitate 2-met 99.8 1.4E-19 3E-24 167.5 12.3 144 120-274 27-179 (255)
11 PLN02244 tocopherol O-methyltr 99.8 5.3E-19 1.2E-23 170.0 15.3 146 121-274 117-273 (340)
12 PRK11036 putative S-adenosyl-L 99.8 3.8E-19 8.2E-24 164.6 11.6 159 110-274 31-202 (255)
13 PRK05785 hypothetical protein; 99.8 8.3E-19 1.8E-23 159.1 11.6 122 87-212 7-140 (226)
14 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.9E-19 6.4E-24 158.3 6.8 144 122-274 59-210 (243)
15 PTZ00098 phosphoethanolamine N 99.8 1.7E-17 3.6E-22 154.1 15.0 141 119-274 49-197 (263)
16 PF08241 Methyltransf_11: Meth 99.8 2.7E-18 5.9E-23 133.5 8.2 88 127-217 1-95 (95)
17 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.4E-17 3E-22 153.4 11.4 152 120-274 54-225 (247)
18 PLN02490 MPBQ/MSBQ methyltrans 99.7 3.1E-17 6.6E-22 156.1 13.8 168 85-274 68-251 (340)
19 PRK15068 tRNA mo(5)U34 methylt 99.7 2.5E-17 5.4E-22 156.9 11.8 147 111-274 112-269 (322)
20 TIGR00740 methyltransferase, p 99.7 4.8E-17 1E-21 149.1 12.6 150 121-274 52-222 (239)
21 PRK08317 hypothetical protein; 99.7 2.5E-17 5.3E-22 150.3 10.3 145 119-274 16-171 (241)
22 KOG1270 Methyltransferases [Co 99.7 2.1E-17 4.5E-22 147.4 8.9 140 123-274 90-244 (282)
23 PF13847 Methyltransf_31: Meth 99.7 5.1E-17 1.1E-21 138.5 10.8 137 121-271 2-152 (152)
24 TIGR00452 methyltransferase, p 99.7 3.9E-17 8.5E-22 154.1 11.0 139 121-275 120-269 (314)
25 KOG4300 Predicted methyltransf 99.7 1.1E-16 2.3E-21 137.6 12.2 128 88-222 46-185 (252)
26 PF07021 MetW: Methionine bios 99.7 2.1E-17 4.6E-22 142.4 7.6 148 117-275 8-163 (193)
27 PLN02336 phosphoethanolamine N 99.7 2E-16 4.3E-21 159.3 14.2 137 120-274 264-409 (475)
28 PRK06202 hypothetical protein; 99.7 2.9E-16 6.2E-21 143.3 12.6 158 110-274 48-217 (232)
29 PRK11873 arsM arsenite S-adeno 99.7 2.3E-16 4.9E-21 147.4 12.2 141 118-274 73-225 (272)
30 PRK00216 ubiE ubiquinone/menaq 99.7 5.1E-16 1.1E-20 141.8 14.2 134 86-223 8-162 (239)
31 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 4.4E-16 9.5E-21 140.7 13.4 180 92-274 2-205 (223)
32 PRK01683 trans-aconitate 2-met 99.7 4.6E-16 1E-20 144.2 13.8 147 120-274 29-182 (258)
33 PF12847 Methyltransf_18: Meth 99.7 2.2E-16 4.7E-21 127.1 8.7 97 122-219 1-111 (112)
34 smart00828 PKS_MT Methyltransf 99.7 7.2E-16 1.6E-20 139.8 11.4 127 124-274 1-139 (224)
35 PRK11207 tellurite resistance 99.7 1.4E-15 3E-20 135.3 12.8 106 111-219 20-134 (197)
36 COG2230 Cfa Cyclopropane fatty 99.6 1.7E-15 3.7E-20 139.0 12.9 139 119-274 69-218 (283)
37 PF08003 Methyltransf_9: Prote 99.6 6.4E-16 1.4E-20 141.8 9.6 151 107-274 101-262 (315)
38 PF02353 CMAS: Mycolic acid cy 99.6 2.8E-16 6E-21 146.0 7.2 143 119-274 59-212 (273)
39 TIGR02072 BioC biotin biosynth 99.6 1.3E-15 2.9E-20 138.9 11.3 131 122-274 34-171 (240)
40 COG4106 Tam Trans-aconitate me 99.6 8.5E-16 1.8E-20 133.1 7.9 161 105-274 14-181 (257)
41 TIGR02021 BchM-ChlM magnesium 99.6 2.1E-15 4.6E-20 136.3 10.6 146 113-274 45-201 (219)
42 TIGR02081 metW methionine bios 99.6 2E-15 4.4E-20 134.0 9.3 149 115-274 6-162 (194)
43 TIGR03587 Pse_Me-ase pseudamin 99.6 6.1E-15 1.3E-19 131.6 12.3 104 115-222 36-145 (204)
44 TIGR03840 TMPT_Se_Te thiopurin 99.6 1.2E-14 2.7E-19 130.3 13.6 130 90-222 2-155 (213)
45 TIGR00477 tehB tellurite resis 99.6 1.1E-14 2.3E-19 129.4 12.3 107 112-221 21-135 (195)
46 PF13649 Methyltransf_25: Meth 99.6 1.4E-15 3E-20 120.4 5.7 87 126-213 1-101 (101)
47 PF08242 Methyltransf_12: Meth 99.6 7.4E-16 1.6E-20 121.4 3.2 86 127-215 1-99 (99)
48 PF05401 NodS: Nodulation prot 99.6 1E-14 2.2E-19 126.1 9.9 134 87-221 5-148 (201)
49 PLN02585 magnesium protoporphy 99.6 2E-14 4.3E-19 136.0 12.1 177 82-274 84-294 (315)
50 TIGR02716 C20_methyl_CrtF C-20 99.6 4.6E-14 1E-18 134.1 13.5 144 119-274 146-301 (306)
51 smart00138 MeTrc Methyltransfe 99.6 1.1E-14 2.4E-19 135.2 8.7 98 121-219 98-242 (264)
52 PRK12335 tellurite resistance 99.5 4.5E-14 9.7E-19 132.9 12.6 105 113-220 112-224 (287)
53 PLN02232 ubiquinone biosynthes 99.5 1.8E-14 3.9E-19 123.8 8.8 126 146-274 1-142 (160)
54 TIGR01983 UbiG ubiquinone bios 99.5 5.7E-14 1.2E-18 127.3 12.3 145 122-275 45-199 (224)
55 PRK13255 thiopurine S-methyltr 99.5 1.4E-13 3E-18 124.0 14.2 131 87-220 2-156 (218)
56 PRK11705 cyclopropane fatty ac 99.5 6.7E-14 1.5E-18 136.4 12.5 101 119-223 164-271 (383)
57 PRK06922 hypothetical protein; 99.5 8.2E-14 1.8E-18 140.6 12.4 104 119-222 415-540 (677)
58 PLN02336 phosphoethanolamine N 99.5 9.9E-14 2.1E-18 139.7 13.0 133 121-274 36-177 (475)
59 PRK05134 bifunctional 3-demeth 99.5 2.1E-13 4.6E-18 124.4 13.9 146 120-274 46-200 (233)
60 PRK11088 rrmA 23S rRNA methylt 99.5 7.3E-14 1.6E-18 130.5 10.5 91 122-222 85-184 (272)
61 PRK00107 gidB 16S rRNA methylt 99.5 1.4E-13 3.1E-18 120.9 11.3 96 118-221 41-147 (187)
62 KOG2361 Predicted methyltransf 99.5 1.5E-13 3.2E-18 121.3 10.8 181 87-274 35-232 (264)
63 PRK07580 Mg-protoporphyrin IX 99.5 2.3E-13 5.1E-18 123.7 12.2 139 120-274 61-209 (230)
64 COG4976 Predicted methyltransf 99.5 2.3E-14 5.1E-19 125.1 4.0 164 88-274 84-260 (287)
65 PF03848 TehB: Tellurite resis 99.5 3E-13 6.5E-18 118.3 9.9 107 112-221 21-135 (192)
66 TIGR00138 gidB 16S rRNA methyl 99.4 1.9E-12 4.1E-17 113.4 12.6 90 122-219 42-142 (181)
67 KOG1541 Predicted protein carb 99.4 1.3E-12 2.8E-17 113.7 11.0 99 123-221 51-162 (270)
68 PRK00121 trmB tRNA (guanine-N( 99.4 5.2E-13 1.1E-17 119.2 7.6 99 122-220 40-157 (202)
69 TIGR02469 CbiT precorrin-6Y C5 99.4 3.9E-12 8.5E-17 103.8 11.8 95 120-220 17-123 (124)
70 TIGR00537 hemK_rel_arch HemK-r 99.4 2.5E-12 5.5E-17 112.6 11.1 99 121-221 18-142 (179)
71 PRK11188 rrmJ 23S rRNA methylt 99.4 1.3E-12 2.8E-17 117.2 9.3 111 109-223 38-169 (209)
72 PRK04266 fibrillarin; Provisio 99.4 2.8E-12 6E-17 116.1 11.4 97 118-220 68-177 (226)
73 PRK13256 thiopurine S-methyltr 99.4 7.4E-12 1.6E-16 112.5 13.2 134 85-221 6-165 (226)
74 PF05724 TPMT: Thiopurine S-me 99.4 3.8E-12 8.2E-17 114.5 10.8 161 86-274 1-185 (218)
75 PLN03075 nicotianamine synthas 99.4 2.7E-12 5.8E-17 119.3 9.9 96 122-219 123-233 (296)
76 PRK08287 cobalt-precorrin-6Y C 99.4 6.4E-12 1.4E-16 110.8 11.8 94 119-220 28-132 (187)
77 TIGR00091 tRNA (guanine-N(7)-) 99.3 2.7E-12 5.9E-17 113.8 7.4 99 122-220 16-133 (194)
78 KOG3010 Methyltransferase [Gen 99.3 2.7E-12 5.9E-17 113.5 6.9 117 94-221 11-139 (261)
79 PRK13944 protein-L-isoaspartat 99.3 1.1E-11 2.3E-16 111.0 10.9 91 120-219 70-173 (205)
80 TIGR01177 conserved hypothetic 99.3 1.6E-11 3.6E-16 117.7 12.2 104 118-221 178-296 (329)
81 PHA03411 putative methyltransf 99.3 3.7E-11 8E-16 110.2 13.4 157 87-274 29-209 (279)
82 TIGR00438 rrmJ cell division p 99.3 1.2E-11 2.6E-16 109.1 9.3 107 111-221 21-148 (188)
83 PRK13942 protein-L-isoaspartat 99.3 1.8E-11 3.9E-16 110.1 9.9 92 119-219 73-176 (212)
84 PRK00377 cbiT cobalt-precorrin 99.3 3.3E-11 7.2E-16 107.2 11.0 96 119-220 37-146 (198)
85 KOG1271 Methyltransferases [Ge 99.2 2.1E-11 4.6E-16 103.2 8.0 138 84-221 14-183 (227)
86 PTZ00146 fibrillarin; Provisio 99.2 6.2E-11 1.3E-15 109.9 11.7 95 119-218 129-236 (293)
87 TIGR03438 probable methyltrans 99.2 3.8E-11 8.2E-16 113.7 10.4 102 119-221 60-179 (301)
88 PRK15001 SAM-dependent 23S rib 99.2 7.3E-11 1.6E-15 114.2 12.5 96 123-219 229-340 (378)
89 PRK14968 putative methyltransf 99.2 6.5E-11 1.4E-15 104.0 11.2 99 121-220 22-149 (188)
90 TIGR00080 pimt protein-L-isoas 99.2 5.7E-11 1.2E-15 107.1 10.3 92 119-219 74-177 (215)
91 PRK14121 tRNA (guanine-N(7)-)- 99.2 4.5E-11 9.8E-16 115.2 9.3 99 122-220 122-236 (390)
92 PRK14967 putative methyltransf 99.2 1E-10 2.2E-15 106.1 10.7 100 120-220 34-160 (223)
93 TIGR03534 RF_mod_PrmC protein- 99.2 1.5E-10 3.3E-15 106.6 11.7 97 122-219 87-217 (251)
94 PRK09489 rsmC 16S ribosomal RN 99.2 1.4E-10 2.9E-15 111.5 11.4 96 123-220 197-304 (342)
95 PF13659 Methyltransf_26: Meth 99.2 3.9E-11 8.5E-16 97.1 6.2 97 123-220 1-116 (117)
96 TIGR00406 prmA ribosomal prote 99.2 1.7E-10 3.6E-15 108.7 11.1 94 120-221 157-261 (288)
97 PRK00517 prmA ribosomal protei 99.2 5.2E-11 1.1E-15 109.9 7.4 92 120-221 117-215 (250)
98 PRK07402 precorrin-6B methylas 99.2 2.8E-10 6E-15 101.1 11.0 96 119-221 37-144 (196)
99 PF05175 MTS: Methyltransferas 99.2 1.7E-10 3.7E-15 100.1 9.4 98 122-220 31-141 (170)
100 PF03291 Pox_MCEL: mRNA cappin 99.1 2E-10 4.3E-15 109.5 9.3 101 122-222 62-189 (331)
101 PF05891 Methyltransf_PK: AdoM 99.1 1.2E-10 2.6E-15 102.7 7.1 97 123-220 56-162 (218)
102 PF05148 Methyltransf_8: Hypot 99.1 2.3E-10 5.1E-15 99.9 8.4 101 110-222 60-161 (219)
103 cd02440 AdoMet_MTases S-adenos 99.1 3.5E-10 7.5E-15 87.9 8.6 91 125-218 1-103 (107)
104 PF01135 PCMT: Protein-L-isoas 99.1 2.3E-10 5.1E-15 102.1 7.5 98 113-220 64-173 (209)
105 PRK00312 pcm protein-L-isoaspa 99.1 4.6E-10 1E-14 100.9 9.5 93 119-220 75-176 (212)
106 KOG2940 Predicted methyltransf 99.1 1.9E-10 4E-15 100.8 6.6 142 123-274 73-222 (325)
107 PRK14966 unknown domain/N5-glu 99.1 5.1E-10 1.1E-14 108.6 10.3 102 118-219 247-381 (423)
108 PF00891 Methyltransf_2: O-met 99.1 5.9E-10 1.3E-14 102.3 9.5 100 119-223 97-203 (241)
109 COG2264 PrmA Ribosomal protein 99.1 4.7E-10 1E-14 104.1 8.7 94 120-221 160-265 (300)
110 TIGR00536 hemK_fam HemK family 99.0 1.2E-09 2.6E-14 102.6 10.8 96 124-220 116-245 (284)
111 PRK04457 spermidine synthase; 99.0 9E-10 1.9E-14 102.2 9.5 103 120-222 64-180 (262)
112 TIGR03704 PrmC_rel_meth putati 99.0 2.7E-09 5.9E-14 98.3 12.3 99 122-220 86-217 (251)
113 TIGR03533 L3_gln_methyl protei 99.0 1.3E-09 2.9E-14 102.3 10.3 98 122-220 121-252 (284)
114 KOG1975 mRNA cap methyltransfe 99.0 1.2E-09 2.5E-14 100.5 9.5 103 120-222 115-240 (389)
115 PF05219 DREV: DREV methyltran 99.0 1.1E-09 2.4E-14 98.8 9.2 95 122-221 94-190 (265)
116 PRK09328 N5-glutamine S-adenos 99.0 3E-09 6.5E-14 99.4 11.1 99 120-219 106-238 (275)
117 COG4123 Predicted O-methyltran 99.0 2.1E-09 4.6E-14 97.2 9.3 104 117-220 39-171 (248)
118 PRK11805 N5-glutamine S-adenos 99.0 2.1E-09 4.6E-14 101.9 9.6 96 124-220 135-264 (307)
119 COG2518 Pcm Protein-L-isoaspar 99.0 2.4E-09 5.3E-14 94.1 9.2 93 119-220 69-170 (209)
120 PRK13943 protein-L-isoaspartat 99.0 2.2E-09 4.7E-14 102.0 9.5 92 119-219 77-180 (322)
121 PF01739 CheR: CheR methyltran 99.0 1.7E-09 3.7E-14 95.5 8.2 97 122-219 31-175 (196)
122 PF06080 DUF938: Protein of un 99.0 6.8E-09 1.5E-13 91.2 11.7 144 121-274 23-187 (204)
123 PRK10901 16S rRNA methyltransf 99.0 6.1E-09 1.3E-13 103.5 12.6 105 119-223 241-376 (427)
124 COG2242 CobL Precorrin-6B meth 99.0 6.2E-09 1.3E-13 89.6 10.9 97 119-222 31-138 (187)
125 KOG3045 Predicted RNA methylas 99.0 5.2E-09 1.1E-13 93.5 10.7 100 110-222 168-267 (325)
126 PRK14901 16S rRNA methyltransf 99.0 4.4E-09 9.6E-14 104.6 11.5 105 119-223 249-388 (434)
127 PRK14903 16S rRNA methyltransf 99.0 3.4E-09 7.3E-14 105.2 10.4 108 116-223 231-370 (431)
128 PRK10611 chemotaxis methyltran 99.0 5.5E-09 1.2E-13 97.5 11.1 96 123-219 116-262 (287)
129 PRK14904 16S rRNA methyltransf 98.9 3.8E-09 8.2E-14 105.5 10.6 107 117-224 245-382 (445)
130 TIGR00563 rsmB ribosomal RNA s 98.9 6.6E-09 1.4E-13 103.2 11.9 105 119-223 235-372 (426)
131 TIGR00446 nop2p NOL1/NOP2/sun 98.9 5.7E-09 1.2E-13 97.0 10.0 108 116-223 65-203 (264)
132 PF06325 PrmA: Ribosomal prote 98.9 4.3E-09 9.4E-14 98.6 8.8 95 120-222 159-262 (295)
133 PRK00811 spermidine synthase; 98.9 5.2E-09 1.1E-13 98.2 8.5 99 121-219 75-191 (283)
134 PRK01544 bifunctional N5-gluta 98.9 9.7E-09 2.1E-13 103.8 10.3 97 122-219 138-269 (506)
135 COG2813 RsmC 16S RNA G1207 met 98.8 3E-08 6.4E-13 91.7 11.5 97 122-220 158-267 (300)
136 smart00650 rADc Ribosomal RNA 98.8 1.1E-08 2.4E-13 88.6 8.0 94 120-219 11-113 (169)
137 PRK03612 spermidine synthase; 98.8 1.2E-08 2.5E-13 103.7 9.3 99 121-219 296-415 (521)
138 PRK14902 16S rRNA methyltransf 98.8 2.2E-08 4.8E-13 100.0 11.2 103 119-222 247-382 (444)
139 PHA03412 putative methyltransf 98.8 4.2E-08 9.1E-13 88.2 11.5 92 122-214 49-158 (241)
140 PF12147 Methyltransf_20: Puta 98.8 7.2E-08 1.6E-12 88.3 13.1 142 121-274 134-293 (311)
141 PRK11783 rlmL 23S rRNA m(2)G24 98.8 1.7E-08 3.7E-13 106.0 9.7 104 113-219 529-656 (702)
142 COG2519 GCD14 tRNA(1-methylade 98.8 3E-08 6.4E-13 89.2 9.6 100 116-224 88-200 (256)
143 PLN02781 Probable caffeoyl-CoA 98.8 1.5E-08 3.2E-13 92.5 7.7 102 112-219 58-178 (234)
144 PRK01581 speE spermidine synth 98.8 1.8E-08 3.8E-13 96.1 8.0 99 121-219 149-268 (374)
145 PF02390 Methyltransf_4: Putat 98.8 1.8E-08 3.8E-13 89.3 7.0 96 125-220 20-134 (195)
146 PRK15128 23S rRNA m(5)C1962 me 98.7 3.4E-08 7.4E-13 96.7 8.4 106 115-221 213-341 (396)
147 PF03141 Methyltransf_29: Puta 98.7 8E-09 1.7E-13 101.0 2.8 98 124-223 119-223 (506)
148 COG2521 Predicted archaeal met 98.7 3.5E-08 7.7E-13 87.0 6.2 135 108-274 118-272 (287)
149 COG1041 Predicted DNA modifica 98.7 1.2E-07 2.6E-12 89.4 9.8 109 112-220 187-311 (347)
150 PLN02366 spermidine synthase 98.7 8.3E-08 1.8E-12 90.8 8.6 99 121-219 90-206 (308)
151 COG1352 CheR Methylase of chem 98.6 1.1E-07 2.3E-12 87.8 8.9 96 123-219 97-241 (268)
152 KOG1499 Protein arginine N-met 98.6 4.2E-08 9.2E-13 91.9 6.1 108 108-216 46-164 (346)
153 TIGR00417 speE spermidine synt 98.6 7.5E-08 1.6E-12 89.9 7.8 97 122-218 72-185 (270)
154 PF11968 DUF3321: Putative met 98.6 1.3E-07 2.7E-12 83.4 8.6 115 124-274 53-176 (219)
155 KOG1269 SAM-dependent methyltr 98.6 5E-08 1.1E-12 93.8 5.6 105 115-222 103-218 (364)
156 PF08704 GCD14: tRNA methyltra 98.6 1.8E-07 3.9E-12 85.4 8.5 104 113-224 31-151 (247)
157 KOG2899 Predicted methyltransf 98.6 2.6E-07 5.7E-12 82.1 8.7 98 121-218 57-208 (288)
158 PLN02672 methionine S-methyltr 98.5 3.9E-07 8.5E-12 98.2 10.9 97 123-219 119-278 (1082)
159 COG4122 Predicted O-methyltran 98.5 2.6E-07 5.6E-12 82.5 7.8 104 112-221 49-168 (219)
160 COG2890 HemK Methylase of poly 98.5 4.9E-07 1.1E-11 84.6 9.7 93 125-219 113-238 (280)
161 PLN02476 O-methyltransferase 98.5 3.3E-07 7.1E-12 85.0 8.3 102 112-219 108-228 (278)
162 PRK10909 rsmD 16S rRNA m(2)G96 98.5 6.1E-07 1.3E-11 79.6 9.6 97 121-221 52-161 (199)
163 PRK03522 rumB 23S rRNA methylu 98.5 2.6E-07 5.7E-12 88.1 7.7 93 122-220 173-275 (315)
164 COG2263 Predicted RNA methylas 98.5 4E-07 8.6E-12 78.3 7.5 82 121-209 44-137 (198)
165 PRK04148 hypothetical protein; 98.5 1.5E-06 3.2E-11 71.5 10.5 94 122-223 16-113 (134)
166 COG0220 Predicted S-adenosylme 98.5 6.7E-07 1.5E-11 80.7 9.0 97 124-220 50-165 (227)
167 PF01596 Methyltransf_3: O-met 98.5 3.4E-07 7.3E-12 81.6 7.0 102 112-219 35-155 (205)
168 PRK13168 rumA 23S rRNA m(5)U19 98.5 4.7E-07 1E-11 90.5 8.7 93 120-219 295-400 (443)
169 KOG3178 Hydroxyindole-O-methyl 98.5 8.4E-07 1.8E-11 83.5 9.5 95 123-223 178-279 (342)
170 KOG1661 Protein-L-isoaspartate 98.4 3.8E-07 8.3E-12 79.4 6.3 93 119-220 79-194 (237)
171 PF10294 Methyltransf_16: Puta 98.4 8E-07 1.7E-11 77.3 7.6 98 120-221 43-158 (173)
172 COG0500 SmtA SAM-dependent met 98.4 3E-06 6.6E-11 70.3 10.1 94 126-223 52-159 (257)
173 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.4 3.8E-06 8.2E-11 77.0 11.1 134 121-274 55-234 (256)
174 PLN02823 spermine synthase 98.3 1.8E-06 3.8E-11 82.7 8.7 94 121-218 102-219 (336)
175 TIGR00478 tly hemolysin TlyA f 98.3 2.1E-06 4.5E-11 77.7 8.7 87 121-219 74-171 (228)
176 COG3963 Phospholipid N-methylt 98.3 5E-06 1.1E-10 70.0 9.9 102 120-222 46-159 (194)
177 PF07942 N2227: N2227-like pro 98.3 3.9E-06 8.6E-11 77.3 10.1 163 90-275 17-238 (270)
178 TIGR00479 rumA 23S rRNA (uraci 98.3 1.6E-06 3.5E-11 86.4 7.7 94 120-219 290-396 (431)
179 PRK14896 ksgA 16S ribosomal RN 98.3 2.4E-06 5.1E-11 79.2 7.7 70 119-190 26-102 (258)
180 PRK00274 ksgA 16S ribosomal RN 98.2 1.6E-06 3.5E-11 81.0 6.2 70 119-188 39-114 (272)
181 PLN02589 caffeoyl-CoA O-methyl 98.2 2.6E-06 5.6E-11 78.0 7.2 102 112-219 69-190 (247)
182 PF02527 GidB: rRNA small subu 98.2 3.7E-06 8E-11 73.6 7.8 87 125-219 51-148 (184)
183 COG1092 Predicted SAM-dependen 98.2 2.5E-06 5.4E-11 82.8 6.9 108 111-221 206-338 (393)
184 TIGR02085 meth_trns_rumB 23S r 98.2 3E-06 6.5E-11 82.8 7.6 92 122-219 233-334 (374)
185 PF05185 PRMT5: PRMT5 arginine 98.2 3.4E-06 7.4E-11 83.8 7.8 92 123-216 187-294 (448)
186 PF01170 UPF0020: Putative RNA 98.2 4.6E-06 1E-10 72.9 7.7 102 116-218 22-149 (179)
187 KOG3987 Uncharacterized conser 98.2 4.8E-07 1E-11 78.5 1.4 92 123-219 113-207 (288)
188 PRK01544 bifunctional N5-gluta 98.2 2.1E-06 4.6E-11 86.9 6.2 98 122-219 347-462 (506)
189 TIGR03439 methyl_EasF probable 98.1 2.3E-05 5E-10 74.4 11.2 101 118-219 72-197 (319)
190 KOG3420 Predicted RNA methylas 98.1 3.3E-06 7.1E-11 69.3 4.5 69 122-190 48-125 (185)
191 KOG2904 Predicted methyltransf 98.1 1.6E-05 3.6E-10 72.1 9.0 100 122-221 148-287 (328)
192 TIGR00755 ksgA dimethyladenosi 98.1 1.2E-05 2.6E-10 74.3 8.5 67 120-188 27-103 (253)
193 PTZ00338 dimethyladenosine tra 98.0 7.7E-06 1.7E-10 77.0 6.2 73 119-194 33-115 (294)
194 COG0293 FtsJ 23S rRNA methylas 98.0 1.9E-05 4.1E-10 69.6 8.0 102 119-224 42-164 (205)
195 TIGR00095 RNA methyltransferas 98.0 2.5E-05 5.5E-10 68.9 8.8 95 122-220 49-160 (189)
196 COG4627 Uncharacterized protei 98.0 2E-06 4.3E-11 71.3 1.2 86 125-224 5-91 (185)
197 COG0421 SpeE Spermidine syntha 98.0 2.2E-05 4.7E-10 73.3 8.1 92 124-219 78-190 (282)
198 PRK11933 yebU rRNA (cytosine-C 98.0 3.9E-05 8.5E-10 76.7 10.2 106 119-224 110-247 (470)
199 PF09243 Rsm22: Mitochondrial 98.0 2.9E-05 6.4E-10 72.5 8.7 101 122-225 33-145 (274)
200 PF10672 Methyltrans_SAM: S-ad 98.0 6.8E-06 1.5E-10 76.7 4.1 108 111-221 112-240 (286)
201 PF02475 Met_10: Met-10+ like- 97.9 1.9E-05 4.1E-10 70.0 6.4 93 116-216 95-199 (200)
202 PRK00536 speE spermidine synth 97.9 4E-05 8.6E-10 70.7 8.7 87 121-219 71-171 (262)
203 KOG2352 Predicted spermine/spe 97.9 3.4E-05 7.3E-10 75.6 8.5 132 88-220 13-162 (482)
204 KOG3191 Predicted N6-DNA-methy 97.9 7.7E-05 1.7E-09 63.8 9.2 98 123-221 44-170 (209)
205 PRK04338 N(2),N(2)-dimethylgua 97.9 4.5E-05 9.7E-10 74.5 8.2 89 123-218 58-157 (382)
206 PRK11727 23S rRNA mA1618 methy 97.9 5.1E-05 1.1E-09 72.1 8.0 69 122-190 114-200 (321)
207 PF01728 FtsJ: FtsJ-like methy 97.8 4.7E-06 1E-10 72.9 0.5 98 122-223 23-143 (181)
208 PF01564 Spermine_synth: Sperm 97.8 3.1E-05 6.8E-10 71.1 5.3 100 121-220 75-192 (246)
209 COG4262 Predicted spermidine s 97.8 8.4E-05 1.8E-09 70.0 7.9 97 120-220 287-408 (508)
210 KOG1500 Protein arginine N-met 97.8 7.4E-05 1.6E-09 69.6 7.1 94 122-218 177-281 (517)
211 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.0001 2.3E-09 70.1 8.4 104 118-221 42-185 (311)
212 COG0357 GidB Predicted S-adeno 97.7 0.00021 4.7E-09 63.7 9.7 90 123-219 68-168 (215)
213 PRK11760 putative 23S rRNA C24 97.7 6.3E-05 1.4E-09 71.2 6.5 86 120-212 209-296 (357)
214 KOG1709 Guanidinoacetate methy 97.7 0.00017 3.7E-09 63.3 8.6 96 121-219 100-206 (271)
215 KOG1663 O-methyltransferase [S 97.7 0.00045 9.7E-09 61.5 11.3 101 113-219 64-183 (237)
216 PF04672 Methyltransf_19: S-ad 97.7 0.00021 4.5E-09 65.6 9.5 137 124-274 70-231 (267)
217 KOG4589 Cell division protein 97.7 7E-05 1.5E-09 64.3 5.9 102 119-224 66-189 (232)
218 PF01269 Fibrillarin: Fibrilla 97.5 0.0007 1.5E-08 60.2 9.7 97 119-220 70-179 (229)
219 TIGR02143 trmA_only tRNA (urac 97.5 0.00019 4E-09 69.6 6.5 88 124-219 199-311 (353)
220 PF08123 DOT1: Histone methyla 97.5 0.00013 2.9E-09 64.9 4.9 111 101-216 22-155 (205)
221 PRK05031 tRNA (uracil-5-)-meth 97.5 0.0002 4.3E-09 69.7 5.9 89 123-219 207-320 (362)
222 PF03602 Cons_hypoth95: Conser 97.5 8.7E-05 1.9E-09 65.0 3.0 98 121-221 41-155 (183)
223 COG2520 Predicted methyltransf 97.4 0.00083 1.8E-08 64.1 9.5 101 116-223 182-293 (341)
224 COG0144 Sun tRNA and rRNA cyto 97.4 0.0017 3.7E-08 63.0 11.8 112 113-224 147-293 (355)
225 COG0030 KsgA Dimethyladenosine 97.4 0.00039 8.4E-09 63.8 6.7 74 120-194 28-109 (259)
226 KOG0820 Ribosomal RNA adenine 97.3 0.00038 8.3E-09 63.3 5.8 67 119-187 55-131 (315)
227 PRK11783 rlmL 23S rRNA m(2)G24 97.3 0.0015 3.2E-08 69.1 10.6 78 144-221 258-349 (702)
228 PRK00050 16S rRNA m(4)C1402 me 97.3 0.00035 7.5E-09 65.7 5.0 77 110-187 8-98 (296)
229 TIGR00308 TRM1 tRNA(guanine-26 97.2 0.001 2.2E-08 64.7 7.2 90 123-219 45-147 (374)
230 PF03059 NAS: Nicotianamine sy 97.1 0.0017 3.8E-08 60.2 7.6 95 123-219 121-230 (276)
231 COG4076 Predicted RNA methylas 97.1 0.00053 1.2E-08 59.0 3.6 91 124-217 34-133 (252)
232 COG0742 N6-adenine-specific me 97.1 0.0036 7.8E-08 54.5 8.8 98 121-221 42-156 (187)
233 PF13679 Methyltransf_32: Meth 97.0 0.0017 3.8E-08 54.3 6.6 89 121-218 24-130 (141)
234 COG4798 Predicted methyltransf 97.0 0.0036 7.8E-08 54.3 8.3 135 118-274 44-200 (238)
235 KOG2915 tRNA(1-methyladenosine 97.0 0.0084 1.8E-07 54.8 10.9 99 116-222 99-213 (314)
236 COG1889 NOP1 Fibrillarin-like 97.0 0.0082 1.8E-07 52.5 10.3 97 119-220 73-181 (231)
237 PF03141 Methyltransf_29: Puta 97.0 0.00068 1.5E-08 67.0 3.7 95 124-219 367-467 (506)
238 KOG2798 Putative trehalase [Ca 96.9 0.0041 8.8E-08 57.9 8.1 163 90-274 111-332 (369)
239 TIGR02987 met_A_Alw26 type II 96.8 0.0035 7.6E-08 64.1 7.6 66 122-187 31-120 (524)
240 PF04816 DUF633: Family of unk 96.6 0.0055 1.2E-07 54.6 6.8 87 126-218 1-100 (205)
241 PF00398 RrnaAD: Ribosomal RNA 96.6 0.0066 1.4E-07 56.4 7.5 86 120-211 28-123 (262)
242 COG1189 Predicted rRNA methyla 96.6 0.012 2.7E-07 52.8 8.5 93 120-219 77-178 (245)
243 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.5 0.0074 1.6E-07 56.7 7.4 105 118-222 81-222 (283)
244 COG5459 Predicted rRNA methyla 96.5 0.0044 9.6E-08 58.4 5.3 102 123-225 114-231 (484)
245 PLN02668 indole-3-acetate carb 96.5 0.018 3.9E-07 56.1 9.5 101 123-223 64-241 (386)
246 PF06962 rRNA_methylase: Putat 96.4 0.0089 1.9E-07 49.6 6.2 77 144-222 1-95 (140)
247 COG2265 TrmA SAM-dependent met 96.3 0.0084 1.8E-07 59.5 6.4 93 121-219 292-396 (432)
248 PF07091 FmrO: Ribosomal RNA m 96.3 0.029 6.3E-07 51.0 9.3 108 110-221 92-210 (251)
249 COG0116 Predicted N6-adenine-s 96.3 0.029 6.3E-07 54.2 9.6 102 118-219 187-344 (381)
250 PF09445 Methyltransf_15: RNA 96.2 0.0022 4.7E-08 54.9 1.6 61 125-185 2-75 (163)
251 COG3897 Predicted methyltransf 96.2 0.0098 2.1E-07 51.8 5.6 93 121-220 78-180 (218)
252 PF13578 Methyltransf_24: Meth 96.2 0.0016 3.4E-08 51.5 0.5 89 127-219 1-105 (106)
253 PF05958 tRNA_U5-meth_tr: tRNA 96.2 0.013 2.8E-07 56.8 6.9 49 125-173 199-256 (352)
254 TIGR01444 fkbM_fam methyltrans 96.0 0.0094 2E-07 49.6 4.4 37 125-161 1-41 (143)
255 KOG3115 Methyltransferase-like 96.0 0.029 6.4E-07 49.1 7.3 98 122-219 60-183 (249)
256 KOG3201 Uncharacterized conser 95.9 0.0036 7.8E-08 52.7 1.5 96 122-220 29-141 (201)
257 PRK09424 pntA NAD(P) transhydr 95.9 0.042 9E-07 55.7 9.1 97 121-220 163-286 (509)
258 KOG2187 tRNA uracil-5-methyltr 95.9 0.013 2.8E-07 58.2 5.3 98 118-219 379-490 (534)
259 COG2384 Predicted SAM-dependen 95.8 0.056 1.2E-06 48.1 8.7 87 119-210 13-111 (226)
260 COG1064 AdhP Zn-dependent alco 95.5 0.062 1.4E-06 51.3 8.4 93 118-221 162-261 (339)
261 KOG1596 Fibrillarin and relate 95.5 0.1 2.2E-06 47.0 9.0 98 119-221 153-263 (317)
262 KOG2730 Methylase [General fun 95.5 0.022 4.9E-07 50.5 4.7 88 122-212 94-195 (263)
263 KOG2793 Putative N2,N2-dimethy 94.6 0.15 3.2E-06 46.6 7.7 98 122-222 86-202 (248)
264 KOG1122 tRNA and rRNA cytosine 94.4 0.12 2.5E-06 50.3 6.9 104 120-224 239-376 (460)
265 PF06859 Bin3: Bicoid-interact 94.2 0.035 7.6E-07 43.9 2.4 40 179-218 1-43 (110)
266 PF05971 Methyltransf_10: Prot 94.1 0.11 2.3E-06 48.9 5.9 71 123-193 103-191 (299)
267 KOG0024 Sorbitol dehydrogenase 94.1 0.39 8.5E-06 45.3 9.4 97 118-223 165-277 (354)
268 KOG1562 Spermidine synthase [A 94.1 0.21 4.5E-06 46.5 7.4 100 120-219 119-236 (337)
269 TIGR00561 pntA NAD(P) transhyd 93.8 0.12 2.6E-06 52.3 5.8 93 122-217 163-282 (511)
270 PF03269 DUF268: Caenorhabditi 93.7 0.053 1.2E-06 45.8 2.7 47 177-223 61-115 (177)
271 PF04989 CmcI: Cephalosporin h 93.5 0.24 5.2E-06 44.0 6.6 98 119-221 30-149 (206)
272 cd08283 FDH_like_1 Glutathione 93.4 0.31 6.7E-06 47.7 8.1 99 118-219 180-306 (386)
273 KOG0822 Protein kinase inhibit 93.4 0.081 1.8E-06 52.7 3.8 95 123-218 368-477 (649)
274 PF03492 Methyltransf_7: SAM d 93.3 0.33 7.2E-06 46.7 7.9 104 121-224 15-188 (334)
275 KOG4058 Uncharacterized conser 93.3 0.71 1.5E-05 38.5 8.6 102 111-221 62-174 (199)
276 KOG2671 Putative RNA methylase 93.2 0.31 6.7E-06 46.3 7.2 130 91-220 175-355 (421)
277 KOG2920 Predicted methyltransf 92.8 0.094 2E-06 48.5 3.1 95 121-218 115-233 (282)
278 PRK09880 L-idonate 5-dehydroge 92.7 0.45 9.8E-06 45.7 8.0 91 121-220 168-267 (343)
279 cd08254 hydroxyacyl_CoA_DH 6-h 92.6 0.76 1.6E-05 43.5 9.4 93 119-220 162-264 (338)
280 COG1063 Tdh Threonine dehydrog 92.5 0.82 1.8E-05 44.3 9.5 93 121-222 167-272 (350)
281 PF07757 AdoMet_MTase: Predict 92.4 0.078 1.7E-06 41.7 1.8 29 122-150 58-88 (112)
282 TIGR00006 S-adenosyl-methyltra 92.4 0.31 6.6E-06 46.1 6.1 76 111-187 10-100 (305)
283 PF03686 UPF0146: Uncharacteri 91.9 0.26 5.7E-06 40.0 4.3 102 111-224 2-107 (127)
284 COG0286 HsdM Type I restrictio 91.7 2.2 4.7E-05 43.4 11.8 115 107-221 168-328 (489)
285 COG4301 Uncharacterized conser 91.7 1.4 3.1E-05 40.1 9.1 103 116-219 72-193 (321)
286 TIGR00027 mthyl_TIGR00027 meth 91.7 3.2 6.9E-05 38.5 12.0 141 124-274 83-245 (260)
287 PF11599 AviRa: RRNA methyltra 91.5 0.56 1.2E-05 41.7 6.3 98 122-219 51-214 (246)
288 cd00401 AdoHcyase S-adenosyl-L 91.4 0.82 1.8E-05 45.2 8.0 96 110-219 189-289 (413)
289 TIGR02822 adh_fam_2 zinc-bindi 90.8 1.4 3E-05 42.2 9.0 91 118-220 161-255 (329)
290 KOG1099 SAM-dependent methyltr 90.7 0.18 3.8E-06 45.2 2.4 96 123-222 42-166 (294)
291 PHA01634 hypothetical protein 90.5 1.1 2.4E-05 36.5 6.5 63 122-185 28-98 (156)
292 PF11899 DUF3419: Protein of u 90.1 0.36 7.8E-06 47.2 4.2 60 162-222 276-337 (380)
293 KOG2539 Mitochondrial/chloropl 89.7 1.5 3.3E-05 43.4 8.0 102 123-224 201-320 (491)
294 PRK10742 putative methyltransf 89.5 1.3 2.8E-05 40.5 7.1 73 119-191 83-176 (250)
295 PF03514 GRAS: GRAS domain fam 89.0 7.8 0.00017 37.9 12.6 126 93-220 82-244 (374)
296 cd08230 glucose_DH Glucose deh 88.8 1.9 4.1E-05 41.5 8.3 90 120-220 170-270 (355)
297 PF04445 SAM_MT: Putative SAM- 88.8 0.4 8.6E-06 43.5 3.2 74 118-191 69-163 (234)
298 COG1867 TRM1 N2,N2-dimethylgua 88.6 0.96 2.1E-05 43.5 5.7 90 123-219 53-154 (380)
299 KOG2198 tRNA cytosine-5-methyl 88.5 2.4 5.2E-05 40.8 8.3 105 119-223 152-300 (375)
300 COG1255 Uncharacterized protei 88.2 0.79 1.7E-05 36.5 4.1 97 115-223 6-106 (129)
301 cd08237 ribitol-5-phosphate_DH 87.2 2.4 5.3E-05 40.7 7.8 91 120-220 161-257 (341)
302 PRK11524 putative methyltransf 86.4 0.62 1.3E-05 43.7 3.1 57 163-219 9-80 (284)
303 PRK01747 mnmC bifunctional tRN 86.2 1.8 3.9E-05 45.8 6.8 54 165-219 151-206 (662)
304 PF02005 TRM: N2,N2-dimethylgu 85.8 1.3 2.7E-05 43.5 5.0 91 122-219 49-154 (377)
305 PRK13699 putative methylase; P 85.7 0.62 1.3E-05 42.2 2.7 55 164-218 3-71 (227)
306 PF01861 DUF43: Protein of unk 85.6 5.4 0.00012 36.3 8.5 91 122-218 44-148 (243)
307 cd05188 MDR Medium chain reduc 85.1 5 0.00011 36.2 8.5 92 119-220 131-233 (271)
308 COG3510 CmcI Cephalosporin hyd 85.0 10 0.00022 33.4 9.4 104 116-223 64-184 (237)
309 TIGR03451 mycoS_dep_FDH mycoth 84.8 4.7 0.0001 38.9 8.5 91 119-219 173-276 (358)
310 PF01795 Methyltransf_5: MraW 84.6 1.9 4.2E-05 40.8 5.4 52 109-161 8-63 (310)
311 COG0686 Ald Alanine dehydrogen 84.5 1.3 2.9E-05 41.7 4.2 92 124-218 169-267 (371)
312 COG3129 Predicted SAM-dependen 84.2 3.8 8.3E-05 37.0 6.7 83 109-191 60-165 (292)
313 cd08281 liver_ADH_like1 Zinc-d 84.0 4.3 9.2E-05 39.4 7.9 92 119-219 188-290 (371)
314 PF00107 ADH_zinc_N: Zinc-bind 84.0 2 4.2E-05 34.6 4.7 73 140-222 12-92 (130)
315 PLN02494 adenosylhomocysteinas 83.8 2.3 5E-05 42.7 5.8 98 110-220 241-342 (477)
316 TIGR03366 HpnZ_proposed putati 83.7 3.3 7.1E-05 38.5 6.7 89 121-219 119-218 (280)
317 PF11312 DUF3115: Protein of u 83.6 1.4 3E-05 41.6 4.0 98 124-221 88-244 (315)
318 PTZ00357 methyltransferase; Pr 83.5 2.2 4.8E-05 44.4 5.6 90 124-214 702-830 (1072)
319 PF02636 Methyltransf_28: Puta 83.3 1.2 2.6E-05 40.9 3.5 68 123-194 19-110 (252)
320 PF02254 TrkA_N: TrkA-N domain 82.9 6.4 0.00014 31.0 7.2 74 141-220 20-97 (116)
321 TIGR00936 ahcY adenosylhomocys 82.2 4.3 9.4E-05 40.1 7.0 85 121-219 193-282 (406)
322 cd00315 Cyt_C5_DNA_methylase C 80.8 2.7 5.7E-05 39.3 4.8 66 125-190 2-73 (275)
323 cd08234 threonine_DH_like L-th 80.7 8.2 0.00018 36.4 8.4 93 118-220 155-258 (334)
324 KOG2651 rRNA adenine N-6-methy 80.4 2.5 5.4E-05 40.9 4.4 44 117-160 148-194 (476)
325 cd08239 THR_DH_like L-threonin 80.3 7.7 0.00017 36.9 8.0 92 119-220 160-263 (339)
326 cd08245 CAD Cinnamyl alcohol d 80.1 11 0.00024 35.6 9.0 92 119-219 159-256 (330)
327 TIGR01202 bchC 2-desacetyl-2-h 80.1 4.5 9.8E-05 38.2 6.3 85 121-220 143-232 (308)
328 PLN02827 Alcohol dehydrogenase 79.8 7 0.00015 38.1 7.7 92 118-219 189-295 (378)
329 TIGR02825 B4_12hDH leukotriene 79.4 13 0.00028 35.1 9.3 92 118-219 134-237 (325)
330 PF01555 N6_N4_Mtase: DNA meth 78.6 2.7 5.8E-05 37.3 4.0 40 121-160 190-231 (231)
331 PLN02740 Alcohol dehydrogenase 78.6 11 0.00024 36.7 8.6 92 118-219 194-300 (381)
332 PLN03154 putative allyl alcoho 78.6 16 0.00035 35.1 9.7 92 118-219 154-258 (348)
333 cd08232 idonate-5-DH L-idonate 78.4 12 0.00026 35.5 8.7 88 122-219 165-262 (339)
334 PRK10309 galactitol-1-phosphat 78.3 11 0.00024 36.0 8.5 91 119-219 157-260 (347)
335 PRK05476 S-adenosyl-L-homocyst 78.3 7.8 0.00017 38.5 7.4 85 121-219 210-299 (425)
336 PRK11524 putative methyltransf 77.7 3.5 7.5E-05 38.7 4.6 41 121-161 207-249 (284)
337 cd08298 CAD2 Cinnamyl alcohol 77.1 15 0.00033 34.5 9.0 90 118-219 163-256 (329)
338 PRK05225 ketol-acid reductoiso 76.7 4.2 9E-05 40.6 4.9 87 122-219 35-131 (487)
339 cd08255 2-desacetyl-2-hydroxye 76.7 9.9 0.00022 34.8 7.4 92 118-219 93-190 (277)
340 TIGR03201 dearomat_had 6-hydro 76.5 14 0.00029 35.5 8.5 92 118-219 162-272 (349)
341 COG1565 Uncharacterized conser 76.0 3.5 7.7E-05 39.7 4.1 41 121-161 76-128 (370)
342 KOG1501 Arginine N-methyltrans 75.5 7.2 0.00016 38.5 6.0 75 85-161 25-108 (636)
343 PRK03562 glutathione-regulated 74.2 18 0.00038 38.1 9.1 90 124-219 401-498 (621)
344 TIGR02818 adh_III_F_hyde S-(hy 74.1 16 0.00035 35.3 8.4 93 118-220 181-288 (368)
345 PF05430 Methyltransf_30: S-ad 74.0 0.83 1.8E-05 37.2 -0.6 53 165-218 35-89 (124)
346 cd08242 MDR_like Medium chain 73.3 18 0.00038 33.9 8.3 89 119-218 152-244 (319)
347 PF12692 Methyltransf_17: S-ad 72.9 1 2.2E-05 37.6 -0.3 95 124-218 30-133 (160)
348 TIGR02819 fdhA_non_GSH formald 72.2 27 0.00059 34.2 9.6 103 118-220 181-300 (393)
349 PRK03659 glutathione-regulated 71.3 21 0.00046 37.3 8.9 92 124-221 401-500 (601)
350 PLN02586 probable cinnamyl alc 70.8 14 0.00031 35.6 7.2 91 120-219 181-278 (360)
351 PRK08306 dipicolinate synthase 70.6 12 0.00025 35.4 6.3 86 122-218 151-240 (296)
352 cd08238 sorbose_phosphate_red 70.5 28 0.00061 34.3 9.3 91 119-218 172-287 (410)
353 KOG1253 tRNA methyltransferase 70.5 1.9 4.2E-05 43.0 0.9 96 117-219 104-216 (525)
354 COG2933 Predicted SAM-dependen 70.4 16 0.00035 33.8 6.7 87 119-212 208-296 (358)
355 COG1062 AdhC Zn-dependent alco 70.4 20 0.00043 34.5 7.5 95 119-222 182-288 (366)
356 cd08300 alcohol_DH_class_III c 69.8 24 0.00052 34.1 8.5 92 118-219 182-288 (368)
357 cd08285 NADP_ADH NADP(H)-depen 69.1 28 0.00062 33.1 8.8 92 118-219 162-266 (351)
358 PRK13699 putative methylase; P 69.0 5.6 0.00012 36.0 3.6 42 120-161 161-204 (227)
359 cd08231 MDR_TM0436_like Hypoth 68.8 31 0.00068 33.0 9.1 90 120-219 175-280 (361)
360 KOG1098 Putative SAM-dependent 68.3 2.9 6.4E-05 42.8 1.7 96 118-217 40-156 (780)
361 KOG2918 Carboxymethyl transfer 68.3 90 0.002 29.7 11.3 152 112-274 77-272 (335)
362 cd08294 leukotriene_B4_DH_like 68.3 32 0.00069 32.2 8.9 90 118-218 139-240 (329)
363 cd08277 liver_alcohol_DH_like 68.1 26 0.00056 33.8 8.3 92 118-219 180-286 (365)
364 cd08295 double_bond_reductase_ 66.8 31 0.00067 32.7 8.5 92 118-219 147-251 (338)
365 KOG2352 Predicted spermine/spe 66.4 20 0.00043 36.0 7.0 104 122-225 295-422 (482)
366 PF02558 ApbA: Ketopantoate re 66.4 7.7 0.00017 32.1 3.8 86 126-218 1-100 (151)
367 cd08261 Zn_ADH7 Alcohol dehydr 66.2 33 0.00071 32.4 8.5 93 118-220 155-259 (337)
368 PRK13403 ketol-acid reductoiso 66.1 13 0.00028 35.6 5.4 86 122-218 15-105 (335)
369 cd08236 sugar_DH NAD(P)-depend 65.7 33 0.00071 32.5 8.5 93 118-219 155-258 (343)
370 cd08301 alcohol_DH_plants Plan 65.7 33 0.00071 33.1 8.5 94 118-220 183-290 (369)
371 PRK10669 putative cation:proto 65.6 29 0.00062 35.9 8.5 90 124-219 418-515 (558)
372 COG0275 Predicted S-adenosylme 64.6 15 0.00031 34.7 5.4 60 112-172 14-84 (314)
373 COG0287 TyrA Prephenate dehydr 64.6 21 0.00045 33.4 6.6 85 124-215 4-94 (279)
374 cd05285 sorbitol_DH Sorbitol d 64.4 38 0.00083 32.1 8.6 95 117-220 157-266 (343)
375 PLN02178 cinnamyl-alcohol dehy 64.0 22 0.00047 34.7 6.9 89 121-219 177-273 (375)
376 PRK06522 2-dehydropantoate 2-r 64.0 28 0.00061 32.4 7.5 88 125-218 2-99 (304)
377 TIGR00518 alaDH alanine dehydr 63.7 5.2 0.00011 39.1 2.5 93 122-218 166-266 (370)
378 PRK12921 2-dehydropantoate 2-r 62.5 33 0.00071 32.1 7.7 86 125-217 2-100 (305)
379 cd05278 FDH_like Formaldehyde 62.4 30 0.00066 32.7 7.5 92 118-219 163-267 (347)
380 PTZ00075 Adenosylhomocysteinas 62.3 14 0.0003 37.3 5.1 85 121-219 252-341 (476)
381 TIGR00497 hsdM type I restrict 61.9 47 0.001 33.8 9.1 112 107-220 197-356 (501)
382 cd08265 Zn_ADH3 Alcohol dehydr 61.4 56 0.0012 31.7 9.3 94 118-219 199-307 (384)
383 cd08233 butanediol_DH_like (2R 60.6 52 0.0011 31.3 8.8 93 118-220 168-273 (351)
384 PF11899 DUF3419: Protein of u 60.5 28 0.00061 34.1 6.9 48 112-159 25-74 (380)
385 cd08274 MDR9 Medium chain dehy 58.6 58 0.0013 30.8 8.8 89 119-218 174-272 (350)
386 COG5379 BtaA S-adenosylmethion 58.1 18 0.00038 34.0 4.6 72 148-220 292-367 (414)
387 cd08296 CAD_like Cinnamyl alco 57.6 56 0.0012 30.8 8.4 92 119-219 160-259 (333)
388 TIGR00692 tdh L-threonine 3-de 56.6 68 0.0015 30.3 8.9 92 119-219 158-261 (340)
389 PRK05708 2-dehydropantoate 2-r 56.6 63 0.0014 30.5 8.5 89 124-218 3-103 (305)
390 cd08286 FDH_like_ADH2 formalde 56.2 74 0.0016 30.1 9.0 93 118-219 162-266 (345)
391 PF02153 PDH: Prephenate dehyd 55.7 21 0.00046 32.9 4.9 69 140-218 9-78 (258)
392 PRK07417 arogenate dehydrogena 55.3 36 0.00077 31.6 6.5 79 125-213 2-85 (279)
393 cd05281 TDH Threonine dehydrog 55.0 60 0.0013 30.7 8.2 91 120-219 161-262 (341)
394 cd08263 Zn_ADH10 Alcohol dehyd 54.7 51 0.0011 31.6 7.7 92 119-219 184-287 (367)
395 cd08243 quinone_oxidoreductase 54.4 79 0.0017 29.1 8.8 90 119-219 139-238 (320)
396 PF04072 LCM: Leucine carboxyl 53.4 87 0.0019 27.0 8.2 82 123-205 79-182 (183)
397 PRK09496 trkA potassium transp 53.2 74 0.0016 31.6 8.8 89 125-219 2-99 (453)
398 PF05050 Methyltransf_21: Meth 52.8 14 0.00031 30.6 3.1 34 128-161 1-42 (167)
399 cd08240 6_hydroxyhexanoate_dh_ 52.5 86 0.0019 29.7 8.8 91 119-219 172-274 (350)
400 cd08293 PTGR2 Prostaglandin re 52.1 91 0.002 29.4 8.9 91 119-219 149-254 (345)
401 COG3315 O-Methyltransferase in 51.1 1.8E+02 0.0039 27.5 10.5 96 123-220 93-210 (297)
402 KOG0022 Alcohol dehydrogenase, 50.5 22 0.00048 33.8 4.1 93 118-219 188-294 (375)
403 KOG2078 tRNA modification enzy 49.6 17 0.00037 35.9 3.3 43 119-161 246-290 (495)
404 cd08278 benzyl_alcohol_DH Benz 49.1 83 0.0018 30.3 8.2 91 119-219 183-285 (365)
405 cd08279 Zn_ADH_class_III Class 48.7 1.1E+02 0.0023 29.4 8.9 93 118-220 178-283 (363)
406 PF06557 DUF1122: Protein of u 48.6 31 0.00067 29.4 4.2 23 199-221 66-88 (170)
407 COG0569 TrkA K+ transport syst 48.2 35 0.00075 30.8 5.0 79 124-208 1-89 (225)
408 PF02826 2-Hacid_dh_C: D-isome 48.0 9.9 0.00021 32.8 1.3 83 121-216 34-124 (178)
409 PLN02514 cinnamyl-alcohol dehy 47.9 95 0.0021 29.8 8.4 91 120-219 178-275 (357)
410 PF03446 NAD_binding_2: NAD bi 47.3 24 0.00052 29.9 3.6 85 125-218 3-93 (163)
411 PRK08507 prephenate dehydrogen 46.9 61 0.0013 29.9 6.6 80 125-215 2-87 (275)
412 PF14740 DUF4471: Domain of un 46.9 27 0.00059 32.8 4.1 35 177-219 220-254 (289)
413 cd08241 QOR1 Quinone oxidoredu 46.8 1.4E+02 0.0031 27.2 9.2 92 118-219 135-238 (323)
414 PLN02256 arogenate dehydrogena 46.6 80 0.0017 29.9 7.4 88 121-219 34-126 (304)
415 PRK07502 cyclohexadienyl dehyd 46.6 83 0.0018 29.6 7.6 84 124-216 7-97 (307)
416 KOG3924 Putative protein methy 46.3 40 0.00086 33.0 5.2 128 88-220 158-309 (419)
417 TIGR00872 gnd_rel 6-phosphoglu 46.3 43 0.00093 31.5 5.5 86 125-218 2-91 (298)
418 PF10354 DUF2431: Domain of un 46.1 52 0.0011 28.2 5.5 58 162-221 53-127 (166)
419 cd08282 PFDH_like Pseudomonas 45.7 1E+02 0.0022 29.7 8.3 98 119-219 173-285 (375)
420 cd05289 MDR_like_2 alcohol deh 45.3 1.7E+02 0.0037 26.5 9.5 90 119-219 141-238 (309)
421 cd05284 arabinose_DH_like D-ar 45.2 1.3E+02 0.0028 28.2 8.8 92 119-219 164-266 (340)
422 cd08246 crotonyl_coA_red croto 45.0 1.4E+02 0.0031 28.9 9.2 91 119-219 190-315 (393)
423 PF02737 3HCDH_N: 3-hydroxyacy 44.6 53 0.0011 28.4 5.4 88 125-220 1-115 (180)
424 cd08270 MDR4 Medium chain dehy 44.6 1.9E+02 0.0041 26.5 9.7 86 122-219 132-222 (305)
425 cd05279 Zn_ADH1 Liver alcohol 44.5 90 0.0019 30.0 7.6 92 118-219 179-285 (365)
426 cd08266 Zn_ADH_like1 Alcohol d 44.5 1.7E+02 0.0036 27.1 9.4 91 118-219 162-265 (342)
427 cd05283 CAD1 Cinnamyl alcohol 44.1 91 0.002 29.4 7.5 90 120-219 167-263 (337)
428 PF01555 N6_N4_Mtase: DNA meth 44.1 17 0.00038 31.9 2.4 24 198-221 35-58 (231)
429 PRK11064 wecC UDP-N-acetyl-D-m 42.7 1.7E+02 0.0037 29.0 9.3 95 124-218 4-118 (415)
430 PLN02702 L-idonate 5-dehydroge 42.3 1.5E+02 0.0032 28.4 8.7 93 118-219 177-285 (364)
431 cd05286 QOR2 Quinone oxidoredu 41.7 1.8E+02 0.0038 26.5 9.0 92 118-219 132-235 (320)
432 COG1748 LYS9 Saccharopine dehy 41.6 42 0.0009 33.0 4.7 64 124-187 2-76 (389)
433 PRK09422 ethanol-active dehydr 41.5 1.6E+02 0.0034 27.7 8.7 93 118-219 158-261 (338)
434 PF07109 Mg-por_mtran_C: Magne 40.7 80 0.0017 24.5 5.1 77 185-274 1-77 (97)
435 KOG1227 Putative methyltransfe 40.5 25 0.00054 33.2 2.8 92 115-214 187-290 (351)
436 PRK10083 putative oxidoreducta 40.1 1.7E+02 0.0036 27.5 8.7 91 119-219 157-259 (339)
437 cd08284 FDH_like_2 Glutathione 40.0 1.6E+02 0.0035 27.7 8.5 92 119-219 164-266 (344)
438 PRK05786 fabG 3-ketoacyl-(acyl 39.9 1.5E+02 0.0032 26.1 7.9 98 122-219 4-135 (238)
439 PRK05562 precorrin-2 dehydroge 39.2 1.1E+02 0.0024 27.7 6.6 85 122-217 24-114 (223)
440 PRK08324 short chain dehydroge 38.9 1.1E+02 0.0024 32.5 7.8 98 122-219 421-557 (681)
441 COG0275 Predicted S-adenosylme 38.8 37 0.0008 32.1 3.6 25 198-222 223-247 (314)
442 TIGR00006 S-adenosyl-methyltra 38.5 38 0.00082 32.1 3.8 24 198-221 219-242 (305)
443 PF00145 DNA_methylase: C-5 cy 37.8 32 0.00069 32.3 3.3 63 125-189 2-71 (335)
444 COG1893 ApbA Ketopantoate redu 37.8 1.5E+02 0.0033 28.1 7.8 88 124-218 1-100 (307)
445 cd08289 MDR_yhfp_like Yhfp put 37.0 1.6E+02 0.0034 27.4 7.9 89 121-220 145-244 (326)
446 PLN03139 formate dehydrogenase 36.8 44 0.00096 32.8 4.1 87 122-217 198-289 (386)
447 PF07101 DUF1363: Protein of u 36.4 13 0.00029 28.4 0.3 12 126-137 6-17 (124)
448 PRK00094 gpsA NAD(P)H-dependen 36.3 1.1E+02 0.0024 28.7 6.7 87 125-217 3-103 (325)
449 PRK09496 trkA potassium transp 36.1 2E+02 0.0044 28.4 8.9 85 122-212 230-324 (453)
450 cd08291 ETR_like_1 2-enoyl thi 36.0 1.9E+02 0.0041 27.0 8.3 87 123-219 143-242 (324)
451 PTZ00354 alcohol dehydrogenase 35.9 2.6E+02 0.0056 25.9 9.2 91 118-219 136-240 (334)
452 KOG1252 Cystathionine beta-syn 35.9 27 0.00058 33.5 2.2 32 124-155 213-252 (362)
453 PRK05396 tdh L-threonine 3-deh 35.6 1.8E+02 0.0039 27.4 8.1 90 121-220 162-264 (341)
454 PRK08265 short chain dehydroge 35.3 1.2E+02 0.0026 27.4 6.6 67 122-188 5-89 (261)
455 PRK08229 2-dehydropantoate 2-r 35.0 1.6E+02 0.0035 28.0 7.7 86 124-216 3-104 (341)
456 PF06016 Reovirus_L2: Reovirus 34.9 30 0.00066 38.7 2.8 93 122-214 822-920 (1289)
457 cd08267 MDR1 Medium chain dehy 34.9 2.6E+02 0.0056 25.6 9.0 92 119-220 140-241 (319)
458 PF01262 AlaDh_PNT_C: Alanine 34.5 37 0.0008 28.9 2.8 89 122-213 19-133 (168)
459 PRK13581 D-3-phosphoglycerate 34.5 50 0.0011 33.9 4.2 86 122-218 139-229 (526)
460 PRK00050 16S rRNA m(4)C1402 me 34.4 46 0.00099 31.5 3.6 25 198-222 215-239 (296)
461 PRK15057 UDP-glucose 6-dehydro 34.3 2.7E+02 0.0058 27.4 9.1 36 125-160 2-40 (388)
462 TIGR00675 dcm DNA-methyltransf 34.1 39 0.00084 32.1 3.2 64 126-189 1-69 (315)
463 PF06690 DUF1188: Protein of u 34.0 1.1E+02 0.0024 27.9 5.7 99 113-227 33-134 (252)
464 cd08287 FDH_like_ADH3 formalde 34.0 2.3E+02 0.0051 26.5 8.6 93 118-219 164-268 (345)
465 COG4017 Uncharacterized protei 33.9 89 0.0019 27.6 4.9 89 121-224 43-134 (254)
466 PRK09599 6-phosphogluconate de 33.7 1E+02 0.0022 28.9 6.0 85 125-215 2-90 (301)
467 KOG0023 Alcohol dehydrogenase, 33.5 2E+02 0.0043 27.6 7.5 92 119-221 178-281 (360)
468 PF01795 Methyltransf_5: MraW 33.4 37 0.00079 32.3 2.8 24 198-221 220-243 (310)
469 PRK05479 ketol-acid reductoiso 33.3 82 0.0018 30.3 5.2 86 122-218 16-107 (330)
470 PLN02688 pyrroline-5-carboxyla 33.2 1.4E+02 0.003 27.3 6.6 84 125-219 2-94 (266)
471 PRK07574 formate dehydrogenase 33.1 75 0.0016 31.2 5.0 86 122-216 191-281 (385)
472 PRK06249 2-dehydropantoate 2-r 32.7 1.7E+02 0.0037 27.5 7.4 88 123-218 5-105 (313)
473 PF05206 TRM13: Methyltransfer 32.6 47 0.001 30.7 3.3 95 120-219 16-140 (259)
474 PRK07819 3-hydroxybutyryl-CoA 32.4 1.1E+02 0.0023 28.7 5.8 38 124-161 6-47 (286)
475 PRK08655 prephenate dehydrogen 32.3 1.2E+02 0.0026 30.3 6.4 81 125-215 2-88 (437)
476 cd08260 Zn_ADH6 Alcohol dehydr 32.2 2.3E+02 0.005 26.6 8.3 92 119-219 162-264 (345)
477 PRK12490 6-phosphogluconate de 32.2 1.1E+02 0.0023 28.8 5.8 85 125-215 2-90 (299)
478 PRK13243 glyoxylate reductase; 31.7 62 0.0013 31.1 4.1 86 122-218 149-239 (333)
479 PLN02712 arogenate dehydrogena 31.4 1.1E+02 0.0025 32.4 6.3 87 122-219 51-142 (667)
480 cd05213 NAD_bind_Glutamyl_tRNA 31.0 93 0.002 29.4 5.2 67 122-190 177-249 (311)
481 PF06460 NSP13: Coronavirus NS 30.9 1.8E+02 0.0039 27.0 6.5 103 111-219 46-169 (299)
482 cd08235 iditol_2_DH_like L-idi 30.4 2.5E+02 0.0054 26.3 8.1 91 119-219 162-265 (343)
483 cd05288 PGDH Prostaglandin deh 29.6 3.7E+02 0.0079 24.9 9.1 90 119-219 142-244 (329)
484 cd08299 alcohol_DH_class_I_II_ 29.6 3.1E+02 0.0067 26.4 8.8 93 118-219 186-292 (373)
485 PLN02353 probable UDP-glucose 29.3 1.5E+02 0.0033 30.0 6.6 95 124-218 2-126 (473)
486 cd08269 Zn_ADH9 Alcohol dehydr 29.0 3.5E+02 0.0075 24.7 8.7 95 117-220 124-230 (312)
487 PRK07066 3-hydroxybutyryl-CoA 28.7 85 0.0019 30.0 4.5 87 124-215 8-115 (321)
488 TIGR02817 adh_fam_1 zinc-bindi 28.6 4.7E+02 0.01 24.2 9.7 87 123-218 149-246 (336)
489 cd01075 NAD_bind_Leu_Phe_Val_D 28.3 1.1E+02 0.0023 27.0 4.8 68 122-194 27-99 (200)
490 TIGR02437 FadB fatty oxidation 28.2 1.5E+02 0.0033 31.7 6.7 90 124-219 314-428 (714)
491 PRK12491 pyrroline-5-carboxyla 28.1 2.2E+02 0.0048 26.3 7.1 88 124-222 3-99 (272)
492 PRK09260 3-hydroxybutyryl-CoA 27.8 2E+02 0.0043 26.7 6.8 87 125-219 3-117 (288)
493 TIGR01751 crot-CoA-red crotony 27.7 4E+02 0.0086 25.9 9.2 91 119-220 186-311 (398)
494 TIGR00465 ilvC ketol-acid redu 27.6 1.5E+02 0.0032 28.3 5.9 87 122-218 2-93 (314)
495 cd08276 MDR7 Medium chain dehy 27.6 4.5E+02 0.0099 24.2 9.4 93 118-220 156-260 (336)
496 cd01842 SGNH_hydrolase_like_5 27.5 1.5E+02 0.0033 25.8 5.3 45 175-219 46-99 (183)
497 COG0059 IlvC Ketol-acid reduct 27.3 2.5E+02 0.0053 26.8 7.0 86 122-218 17-108 (338)
498 PRK08293 3-hydroxybutyryl-CoA 27.3 92 0.002 29.0 4.4 84 124-215 4-116 (287)
499 PF10727 Rossmann-like: Rossma 27.2 1.9E+02 0.0042 23.5 5.7 89 122-220 9-104 (127)
500 PF08484 Methyltransf_14: C-me 27.2 1.8E+02 0.0039 24.6 5.8 88 121-218 66-158 (160)
No 1
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=99.93 E-value=9.3e-26 Score=203.13 Aligned_cols=147 Identities=54% Similarity=0.931 Sum_probs=138.4
Q ss_pred ChhhhHHHHHHHHHhhCcccccccccchHHHHHHHhCCCCCCEEEEECCccCcccccCCCceEEEEeCCHHHHHHHHHcC
Q 017080 83 TPELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRG 162 (377)
Q Consensus 83 ~~~~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~~~~~~v~gvD~s~~~~~~a~~~~ 162 (377)
..+++++|++++|+.++++|..+++..|+...+++...+.+..++|+|||+|.++...|.+.++|.|++...+..++..+
T Consensus 6 ~~eleqeyVh~IYd~ia~~fs~tr~~~Wp~v~qfl~~~~~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~ 85 (293)
T KOG1331|consen 6 LTELEQEYVHSIYDKIATHFSATRAAPWPMVRQFLDSQPTGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSG 85 (293)
T ss_pred HHHHHHHHhHHHHHHhhhhccccccCccHHHHHHHhccCCcceeeecccCCcccCcCCCcceeeecchhhhhccccccCC
Confidence 45889999999999999999999999999999999999999999999999999999899999999999999999999997
Q ss_pred C-eEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhh
Q 017080 163 H-EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229 (377)
Q Consensus 163 ~-~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 229 (377)
. ....+|+..+|+++.+||.+++..++||+....+...+++++.|+|+|||..++..|...+.....
T Consensus 86 ~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~~~~~ 153 (293)
T KOG1331|consen 86 GDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQHQSSS 153 (293)
T ss_pred CceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhccCccc
Confidence 7 699999999999999999999999999999999999999999999999999999999987665443
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.92 E-value=1.9e-25 Score=202.75 Aligned_cols=186 Identities=24% Similarity=0.394 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHhhCcccccc-------cccchHHHHHHHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHH
Q 017080 86 LEKKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPS 153 (377)
Q Consensus 86 ~~~~~~~~~y~~~a~~y~~~-------~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~ 153 (377)
..++++.++|+++++.||.. .+..|++....+....+|.+|||+|||||.++. . .+..+|+|+|+|+.
T Consensus 4 ~k~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ 83 (233)
T PF01209_consen 4 AKEQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG 83 (233)
T ss_dssp ---------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred cHHHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence 34567999999999999862 355677655444556788999999999999653 2 56789999999999
Q ss_pred HHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccc
Q 017080 154 LIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED 226 (377)
Q Consensus 154 ~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~ 226 (377)
|++.|+++ +++++++|++++|+++++||+|++.+.+++++| +.++|+|++|+|||||.++|.++......
T Consensus 84 ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~~~p~~~ 160 (233)
T PF01209_consen 84 MLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEFSKPRNP 160 (233)
T ss_dssp HHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEEEB-SSH
T ss_pred HHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeeccCCCCc
Confidence 99999976 689999999999999999999999999999999 88999999999999999999988755321
Q ss_pred --hhhhhcc----ccchHHHHhhhhCCCCCCc-CCCCCCCcccHHhHhhcCCCcc
Q 017080 227 --KSLVTKW----TPLTQKYVEEWIGPGSPRV-RSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 227 --~~~~~~~----~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
..+...+ .|.....+......+.-.. ....+.+.+++.++++++||+.
T Consensus 161 ~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~ 215 (233)
T PF01209_consen 161 LLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKN 215 (233)
T ss_dssp HHHHHHHH-----------------------------------------------
T ss_pred hhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111111 1111111110000000001 1245777899999999999965
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.92 E-value=7.3e-25 Score=197.17 Aligned_cols=180 Identities=23% Similarity=0.321 Sum_probs=136.5
Q ss_pred hHHHHHHHHHhhCcccccc-------cccchHHHHHHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHH
Q 017080 87 EKKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLI 155 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~-------~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~ 155 (377)
.++.++++|+++++.||.. .+..|++..-....+.+|.+|||||||||.++. ..+.++|+|+|+|+.|+
T Consensus 9 k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML 88 (238)
T COG2226 9 KQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML 88 (238)
T ss_pred cHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH
Confidence 3578999999999999863 366787655555555589999999999999763 35578999999999999
Q ss_pred HHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchh
Q 017080 156 KICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (377)
Q Consensus 156 ~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 228 (377)
+.++++ +++|+++|++++||+|++||+|.+.+.|+++++ ++++|+|++|+|||||++++.++......
T Consensus 89 ~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d---~~~aL~E~~RVlKpgG~~~vle~~~p~~~-- 163 (238)
T COG2226 89 EVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD---IDKALKEMYRVLKPGGRLLVLEFSKPDNP-- 163 (238)
T ss_pred HHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC---HHHHHHHHHHhhcCCeEEEEEEcCCCCch--
Confidence 999988 377999999999999999999999999999999 89999999999999999999987754221
Q ss_pred hhhccccchHHHHhh----hhCCCCC----C-----cCCCCCCCcccHHhHhhcCCCcc
Q 017080 229 LVTKWTPLTQKYVEE----WIGPGSP----R-----VRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~----w~~~~~~----~-----~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.+...+..+... ++..... . .....+.+.+++.++++++||..
T Consensus 164 ---~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~ 219 (238)
T COG2226 164 ---VLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEE 219 (238)
T ss_pred ---hhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceE
Confidence 011111111111 1110000 0 00144778889999999999954
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.89 E-value=7.5e-23 Score=189.64 Aligned_cols=179 Identities=22% Similarity=0.301 Sum_probs=131.2
Q ss_pred HHHHHHHHHhhCcccccc-------cccchHHHHHHHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHH
Q 017080 88 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLI 155 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~-------~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~ 155 (377)
.+.+.+.|+++++.||.. ....|++.......+.++.+|||+|||||.++. . .+..+|+|+|+|+.|+
T Consensus 32 ~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml 111 (261)
T PLN02233 32 ANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL 111 (261)
T ss_pred HHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 567888999999999852 133455544434466788999999999999653 2 3557999999999999
Q ss_pred HHHHHc----------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCcc
Q 017080 156 KICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (377)
Q Consensus 156 ~~a~~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 225 (377)
+.|+++ +++++++|++++|+++++||+|++..+++|+++ +..++++++|+|||||.+++.++.....
T Consensus 112 ~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 112 AVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred HHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCC---HHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 998754 478999999999999999999999999999998 8999999999999999999999875432
Q ss_pred chhhhhccccchHHHHhhhhCC------CCCC-----cCCCCCCCcccHHhHhhcCCCcc
Q 017080 226 DKSLVTKWTPLTQKYVEEWIGP------GSPR-----VRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~w~~~------~~~~-----~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
. .... ....+......+ .... .....+.+.+++.++++++||++
T Consensus 189 ~--~~~~---~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~ 243 (261)
T PLN02233 189 P--FTTS---MQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSS 243 (261)
T ss_pred H--HHHH---HHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCE
Confidence 1 1010 001111000000 0000 01134788999999999999965
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.88 E-value=3.4e-22 Score=176.62 Aligned_cols=206 Identities=20% Similarity=0.242 Sum_probs=153.0
Q ss_pred cCccccCcccCCCCCCCChhhhHH-HHHHHHHhhCccccc-------ccccchHHHHHHHhCCCCCCEEEEECCccCccc
Q 017080 66 SVSTGEDQRCSSSSIKSTPELEKK-YVHRVYDAIAPHFSS-------TRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL 137 (377)
Q Consensus 66 ~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~a~~y~~-------~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~ 137 (377)
..+.+....|.|+++.+..+.+++ .+..+|+..+..||. ..++.|+.+.---....++.++||++||||..+
T Consensus 36 ~~~~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDia 115 (296)
T KOG1540|consen 36 SPSLSVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIA 115 (296)
T ss_pred ccccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhH
Confidence 456667788999999998887776 688899999999986 346678765544344556799999999999964
Q ss_pred ----cc------CCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 138 ----GL------NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 138 ----~~------~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
+. ..+.+|+++|+||.|+..++++ .+.++.+|++++||++++||...+.+.|..+++
T Consensus 116 Fril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th--- 192 (296)
T KOG1540|consen 116 FRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH--- 192 (296)
T ss_pred HHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCC---
Confidence 21 2347999999999999999887 278999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccCcEEEEEEcCCCc-cc-hhhhhccccchHHHHhhhhCCCCCCcC-----CCCCCCcccHHhHhhcC
Q 017080 198 RKKAIEELVRVVKKGSLVLITVWAVEQ-ED-KSLVTKWTPLTQKYVEEWIGPGSPRVR-----SPSARTLESIPETEDNG 270 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~-----~~~~~~~~~l~~~l~~a 270 (377)
++++|+|++|+|||||++.+.+++... +. ..+...+.--.-..+..|+........ ...+.+.++++.+.++|
T Consensus 193 ~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~mieda 272 (296)
T KOG1540|consen 193 IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDA 272 (296)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHc
Confidence 899999999999999999999887543 11 111111110001111223332222111 24577788999999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||..
T Consensus 273 GF~~ 276 (296)
T KOG1540|consen 273 GFSS 276 (296)
T ss_pred CCcc
Confidence 9955
No 6
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.82 E-value=2.3e-19 Score=169.96 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=112.7
Q ss_pred CCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
++.+|||||||+|.++.. ..+++|+|+|+|+.+++.|+.+ ++.++++|++++++.+++||+|++..+++|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 567999999999997642 5678999999999999999864 477899999998887889999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
+.+ +..+++++.++|||||.+++.+++.... ..... .....+...|.... ...+..+++++++.++++++|
T Consensus 211 v~d---~~~~L~~l~r~LkPGG~liist~nr~~~--~~~~~--i~~~eyi~~~lp~g--th~~~~f~tp~eL~~lL~~aG 281 (322)
T PLN02396 211 VAN---PAEFCKSLSALTIPNGATVLSTINRTMR--AYAST--IVGAEYILRWLPKG--THQWSSFVTPEELSMILQRAS 281 (322)
T ss_pred cCC---HHHHHHHHHHHcCCCcEEEEEECCcCHH--HHHHh--hhhHHHHHhcCCCC--CcCccCCCCHHHHHHHHHHcC
Confidence 999 8899999999999999999998764321 00000 01123344443321 112345789999999999999
Q ss_pred Cccc
Q 017080 272 EEQG 275 (377)
Q Consensus 272 F~~~ 275 (377)
|.+.
T Consensus 282 f~i~ 285 (322)
T PLN02396 282 VDVK 285 (322)
T ss_pred CeEE
Confidence 9873
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.82 E-value=5.6e-20 Score=167.60 Aligned_cols=178 Identities=20% Similarity=0.332 Sum_probs=128.1
Q ss_pred HHHHHHHHHhhCcccccc-------cccchHHHHHHHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHH
Q 017080 88 KKYVHRVYDAIAPHFSST-------RFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLI 155 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~-------~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~ 155 (377)
.+.+.++|+++++.||.. ....|++.......+.++.+|||+|||+|.++. . .++.+|+|+|+|+.++
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~ 83 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML 83 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 567889999999999862 233444333333356678999999999999753 2 4677999999999999
Q ss_pred HHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchh
Q 017080 156 KICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (377)
Q Consensus 156 ~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 228 (377)
+.++++ ++.++.+|+..+++++++||+|++..+++|+++ +.++++++.++|+|||.+++.+....... .
T Consensus 84 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-~ 159 (231)
T TIGR02752 84 SVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLETSQPTIP-G 159 (231)
T ss_pred HHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEECCCCCCh-H
Confidence 988865 478899999998888899999999999999999 88999999999999999998876533211 1
Q ss_pred hhhc-------cccchHHHHh------hhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 229 LVTK-------WTPLTQKYVE------EWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 229 ~~~~-------~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+... ..+....... .|.. .....+++.+++.++|+++||++
T Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~aGf~~ 213 (231)
T TIGR02752 160 FKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ-----ESTRDFPGMDELAEMFQEAGFKD 213 (231)
T ss_pred HHHHHHHHHcChhHHhhHHhcCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHcCCCe
Confidence 0000 0000000000 0100 01134678899999999999966
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.81 E-value=1.8e-19 Score=166.38 Aligned_cols=185 Identities=20% Similarity=0.252 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHhhCcccccccccchHHHHHHHhCC--CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc
Q 017080 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 86 ~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
.+++.+.+.|++.+..|+............++..+ .++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.++++
T Consensus 4 ~~k~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 4 VNKQAIAAAFGRAAAHYEQHAELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQK 83 (251)
T ss_pred cCHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhh
Confidence 45677888999999999854322111111222222 3467999999999987643 4568999999999999999987
Q ss_pred --CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHH
Q 017080 162 --GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQK 239 (377)
Q Consensus 162 --~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 239 (377)
...++++|++.+++++++||+|++..+++|+++ +..+|.++.++|||||.++++++.... ...
T Consensus 84 ~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d---~~~~l~~~~~~Lk~gG~l~~~~~~~~~-~~e----------- 148 (251)
T PRK10258 84 DAADHYLAGDIESLPLATATFDLAWSNLAVQWCGN---LSTALRELYRVVRPGGVVAFTTLVQGS-LPE----------- 148 (251)
T ss_pred CCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCC---HHHHHHHHHHHcCCCeEEEEEeCCCCc-hHH-----------
Confidence 357899999999998999999999999999999 889999999999999999999876432 111
Q ss_pred HHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCccccCCcccCCcch
Q 017080 240 YVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQGKEPKQSVPDKL 286 (377)
Q Consensus 240 ~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~~~~~~~~~~~~~ 286 (377)
+...|... ........+.+.+++.+++...|+........+.++..
T Consensus 149 l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~f~~~ 194 (251)
T PRK10258 149 LHQAWQAV-DERPHANRFLPPDAIEQALNGWRYQHHIQPITLWFDDA 194 (251)
T ss_pred HHHHHHHh-ccCCccccCCCHHHHHHHHHhCCceeeeeEEEEECCCH
Confidence 11112111 11223456778899999999988865443344444433
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.81 E-value=3.9e-20 Score=158.45 Aligned_cols=153 Identities=24% Similarity=0.337 Sum_probs=113.9
Q ss_pred cccccchHHHHHHHh-CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCce
Q 017080 104 STRFAKWPKVATFLN-SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFG 180 (377)
Q Consensus 104 ~~~~~~~~~~~~~l~-~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~f 180 (377)
..+...+.++...+. ...++.+|||||||+|.++.. ..+.+++|+|+|+.+++. ..+.....+....+.++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 3 RHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK---RNVVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp -GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH---TTSEEEEEECHTHHCHSSSE
T ss_pred hhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh---hhhhhhhhhhhhhhccccch
Confidence 334455666555554 367889999999999998753 345599999999999988 44556666556666778999
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCc
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTL 260 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 260 (377)
|+|++..+++|+++ +..+|+++.++|||||++++.++....... .....|... .....+..+++.
T Consensus 80 D~i~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~ 144 (161)
T PF13489_consen 80 DLIICNDVLEHLPD---PEEFLKELSRLLKPGGYLVISDPNRDDPSP-----------RSFLKWRYD-RPYGGHVHFFSP 144 (161)
T ss_dssp EEEEEESSGGGSSH---HHHHHHHHHHCEEEEEEEEEEEEBTTSHHH-----------HHHHHCCGT-CHHTTTTEEBBH
T ss_pred hhHhhHHHHhhccc---HHHHHHHHHHhcCCCCEEEEEEcCCcchhh-----------hHHHhcCCc-CccCceeccCCH
Confidence 99999999999998 899999999999999999999987542111 111112111 111144578899
Q ss_pred ccHHhHhhcCCCcc
Q 017080 261 ESIPETEDNGSEEQ 274 (377)
Q Consensus 261 ~~l~~~l~~aGF~~ 274 (377)
+++.++++++||++
T Consensus 145 ~~~~~ll~~~G~~i 158 (161)
T PF13489_consen 145 DELRQLLEQAGFEI 158 (161)
T ss_dssp HHHHHHHHHTTEEE
T ss_pred HHHHHHHHHCCCEE
Confidence 99999999999976
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.81 E-value=1.4e-19 Score=167.51 Aligned_cols=144 Identities=18% Similarity=0.227 Sum_probs=108.6
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
..++.+|||||||+|.++. ..|+.+|+|+|+|+.|++.|++++++++++|+++++ ++++||+|++..++||+++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d- 104 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWK-PKPDTDVVVSNAALQWVPE- 104 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCC-CCCCceEEEEehhhhhCCC-
Confidence 3567899999999999763 257889999999999999999999999999998874 5689999999999999998
Q ss_pred HHHHHHHHHHHHccccCcEEEEEEcCCCcc-chhhhhccccchHHHH--hhhhCCCC--CCcCCCCCCCcccHHhHhhcC
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITVWAVEQE-DKSLVTKWTPLTQKYV--EEWIGPGS--PRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~--~~w~~~~~--~~~~~~~~~~~~~l~~~l~~a 270 (377)
+..++++++++|||||.+++..+..... .... ..... ..|..... +........+.+.+.++|+++
T Consensus 105 --~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-------~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~a 175 (255)
T PRK14103 105 --HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAA-------VRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDA 175 (255)
T ss_pred --HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHH-------HHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhC
Confidence 8899999999999999999986543211 1110 00110 12321111 111123456788999999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||.+
T Consensus 176 Gf~v 179 (255)
T PRK14103 176 GCKV 179 (255)
T ss_pred CCeE
Confidence 9965
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.80 E-value=5.3e-19 Score=169.99 Aligned_cols=146 Identities=21% Similarity=0.276 Sum_probs=107.7
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.++.+|||||||+|.++.. ..+++|+|+|+|+.|++.++++ +++++++|+.++|+++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 5678999999999997542 2378999999999999988764 4789999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (377)
+|+++ +..++++++|+|||||.+++.++......... ....+.....+...... .......+.+++.+++++
T Consensus 197 ~h~~d---~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~-~~l~~~~~~~~~~i~~~----~~~p~~~s~~~~~~~l~~ 268 (340)
T PLN02244 197 EHMPD---KRKFVQELARVAAPGGRIIIVTWCHRDLEPGE-TSLKPDEQKLLDKICAA----YYLPAWCSTSDYVKLAES 268 (340)
T ss_pred hccCC---HHHHHHHHHHHcCCCcEEEEEEeccccccccc-ccCCHHHHHHHHHHHhh----ccCCCCCCHHHHHHHHHH
Confidence 99999 88999999999999999999987643211000 00000011111111110 011234578899999999
Q ss_pred CCCcc
Q 017080 270 GSEEQ 274 (377)
Q Consensus 270 aGF~~ 274 (377)
+||.+
T Consensus 269 aGf~~ 273 (340)
T PLN02244 269 LGLQD 273 (340)
T ss_pred CCCCe
Confidence 99966
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.79 E-value=3.8e-19 Score=164.62 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=111.4
Q ss_pred hHHHHHHHhCC-CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC-CCC
Q 017080 110 WPKVATFLNSL-PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP-YRS 177 (377)
Q Consensus 110 ~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~~ 177 (377)
|+.+..++..+ .++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.|+++ +++++++|+.+++ +.+
T Consensus 31 ~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 31 WQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 44444555444 3467999999999997642 4567999999999999999875 3678899988764 567
Q ss_pred CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccch-hhhhccccchHHHHhhhhCCCCCCcCCCC
Q 017080 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK-SLVTKWTPLTQKYVEEWIGPGSPRVRSPS 256 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 256 (377)
++||+|++..+++|+.+ +..+++++.++|||||.+++..++...... ..... ..................+..
T Consensus 111 ~~fD~V~~~~vl~~~~~---~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~ 184 (255)
T PRK11036 111 TPVDLILFHAVLEWVAD---PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAG---NFDYVQAGMPKRKKRTLSPDY 184 (255)
T ss_pred CCCCEEEehhHHHhhCC---HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHcc---ChHHHHhcCccccccCCCCCC
Confidence 89999999999999998 889999999999999999998876542110 00000 000000000000011111234
Q ss_pred CCCcccHHhHhhcCCCcc
Q 017080 257 ARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 257 ~~~~~~l~~~l~~aGF~~ 274 (377)
.++++++.++++++||++
T Consensus 185 ~~~~~~l~~~l~~aGf~~ 202 (255)
T PRK11036 185 PLDPEQVYQWLEEAGWQI 202 (255)
T ss_pred CCCHHHHHHHHHHCCCeE
Confidence 678899999999999965
No 13
>PRK05785 hypothetical protein; Provisional
Probab=99.78 E-value=8.3e-19 Score=159.14 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhhCccccccc-------ccchHH-HHHHHh-CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHH
Q 017080 87 EKKYVHRVYDAIAPHFSSTR-------FAKWPK-VATFLN-SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSL 154 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~-------~~~~~~-~~~~l~-~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~ 154 (377)
..+.+.+.|+++++.||... ...|++ +...+. ...++.+|||||||||.++.. ..+.+|+|+|+|+.|
T Consensus 7 ~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~M 86 (226)
T PRK05785 7 TWEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENM 86 (226)
T ss_pred cHHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHH
Confidence 45678899999999998632 233543 333333 234578999999999997542 115799999999999
Q ss_pred HHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccC
Q 017080 155 IKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKG 212 (377)
Q Consensus 155 ~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~Lkpg 212 (377)
++.|+++ ..++++|++++|+++++||+|++..+++|+++ +.+++++++|+|||.
T Consensus 87 l~~a~~~-~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d---~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 87 LKMNLVA-DDKVVGSFEALPFRDKSFDVVMSSFALHASDN---IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHhc-cceEEechhhCCCCCCCEEEEEecChhhccCC---HHHHHHHHHHHhcCc
Confidence 9999887 46789999999999999999999999999999 889999999999994
No 14
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.77 E-value=2.9e-19 Score=158.27 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=110.6
Q ss_pred CCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
+|.+|||||||-|.++. ...|+.|+|+|+|+.+++.|+.+ + +++.+..++++....++||+|+|..|++|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 78999999999999875 26679999999999999999976 3 4577788888766568999999999999999
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCc
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEE 273 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~ 273 (377)
+ +..+++.+.+++||||.+++++++.......+ .-+...++-.|+.. +......+..++++..++..+|+.
T Consensus 139 d---p~~~~~~c~~lvkP~G~lf~STinrt~ka~~~----~i~~ae~vl~~vP~--gTH~~~k~irp~El~~~~~~~~~~ 209 (243)
T COG2227 139 D---PESFLRACAKLVKPGGILFLSTINRTLKAYLL----AIIGAEYVLRIVPK--GTHDYRKFIKPAELIRWLLGANLK 209 (243)
T ss_pred C---HHHHHHHHHHHcCCCcEEEEeccccCHHHHHH----HHHHHHHHHHhcCC--cchhHHHhcCHHHHHHhcccCCce
Confidence 9 88999999999999999999998743211110 01122344445442 122235577788999999998886
Q ss_pred c
Q 017080 274 Q 274 (377)
Q Consensus 274 ~ 274 (377)
+
T Consensus 210 ~ 210 (243)
T COG2227 210 I 210 (243)
T ss_pred E
Confidence 6
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.75 E-value=1.7e-17 Score=154.06 Aligned_cols=141 Identities=21% Similarity=0.297 Sum_probs=108.6
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.+.++.+|||||||+|..+.. ..+++|+|+|+|+.|++.++++ ++.+..+|+...++++++||+|++..+++
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 457889999999999986532 3467999999999999999875 47889999998888899999999999999
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a 270 (377)
|++..+ +..++++++++|||||.+++.++..... ..|. ..+ ..+... ......+.+++.++|+++
T Consensus 129 h~~~~d-~~~~l~~i~r~LkPGG~lvi~d~~~~~~-----~~~~---~~~-~~~~~~-----~~~~~~~~~~~~~~l~~a 193 (263)
T PTZ00098 129 HLSYAD-KKKLFEKCYKWLKPNGILLITDYCADKI-----ENWD---EEF-KAYIKK-----RKYTLIPIQEYGDLIKSC 193 (263)
T ss_pred hCCHHH-HHHHHHHHHHHcCCCcEEEEEEeccccc-----cCcH---HHH-HHHHHh-----cCCCCCCHHHHHHHHHHC
Confidence 987433 8899999999999999999998754321 1111 111 111110 113456788999999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||.+
T Consensus 194 GF~~ 197 (263)
T PTZ00098 194 NFQN 197 (263)
T ss_pred CCCe
Confidence 9966
No 16
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.75 E-value=2.7e-18 Score=133.46 Aligned_cols=88 Identities=34% Similarity=0.577 Sum_probs=76.5
Q ss_pred EEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHH
Q 017080 127 LDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 199 (377)
Q Consensus 127 LDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~ 199 (377)
||+|||+|..+.. .++.+|+|+|+|+.+++.++++ ++.+..+|+.++|+++++||+|++..+++|+++ +.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~---~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED---PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH---HH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC---HH
Confidence 8999999997542 4688999999999999999987 456999999999999999999999999999966 89
Q ss_pred HHHHHHHHccccCcEEEE
Q 017080 200 KAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 200 ~~l~~~~r~LkpgG~l~i 217 (377)
++++++.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.73 E-value=1.4e-17 Score=153.39 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=105.4
Q ss_pred CCCCCEEEEECCccCcccc------cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 120 LPSGSLVLDAGCGNGKYLG------LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~------~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
+.++.+|||||||+|..+. ..|+++++|+|+|+.|++.|+++ +++++++|+.+++++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 4578899999999999642 25789999999999999999876 478899999887753 5899999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccc--hh-hhhccccch--HHHH-hhhhCCCCCCcCCCCCCC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQED--KS-LVTKWTPLT--QKYV-EEWIGPGSPRVRSPSART 259 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~-~~~~~~~~~--~~~~-~~w~~~~~~~~~~~~~~~ 259 (377)
..++||+++.+ ...++++++++|||||.+++.+....... .. ....|.... ..+. .++..............+
T Consensus 132 ~~~l~~l~~~~-~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 132 NFTLQFLEPSE-RQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred hhHHHhCCHHH-HHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 99999998644 68999999999999999999874432211 11 111111000 0000 000000000011234568
Q ss_pred cccHHhHhhcCCCcc
Q 017080 260 LESIPETEDNGSEEQ 274 (377)
Q Consensus 260 ~~~l~~~l~~aGF~~ 274 (377)
.++..++|+++||..
T Consensus 211 ~~~~~~~L~~aGF~~ 225 (247)
T PRK15451 211 VETHKARLHKAGFEH 225 (247)
T ss_pred HHHHHHHHHHcCchh
Confidence 899999999999955
No 18
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.73 E-value=3.1e-17 Score=156.06 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=119.9
Q ss_pred hhhHHHHHH--HHHhhCccccccc-ccchHH-HH-HHHh---CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCH
Q 017080 85 ELEKKYVHR--VYDAIAPHFSSTR-FAKWPK-VA-TFLN---SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISP 152 (377)
Q Consensus 85 ~~~~~~~~~--~y~~~a~~y~~~~-~~~~~~-~~-~~l~---~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~ 152 (377)
..-+++... +|+..+..||... ...|.+ +. ..+. ...++.+|||||||+|.++. ..++.+|+|+|+|+
T Consensus 68 ~~~~h~~~~~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~ 147 (340)
T PLN02490 68 RFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP 147 (340)
T ss_pred chhhhhhcceeEccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH
Confidence 344444444 4677888888632 222221 11 1222 12467899999999999642 24667999999999
Q ss_pred HHHHHHHHc----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchh
Q 017080 153 SLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS 228 (377)
Q Consensus 153 ~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~ 228 (377)
.|++.++++ +++++.+|++++++++++||+|++..+++|+++ +..+|++++++|||||.+++.......
T Consensus 148 ~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~---- 220 (340)
T PLN02490 148 HQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKACLIGPVHPT---- 220 (340)
T ss_pred HHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCC---HHHHHHHHHHhcCCCcEEEEEEecCcc----
Confidence 999999875 688999999999988999999999999999999 789999999999999999887543211
Q ss_pred hhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 229 LVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.|. ...+...| ..+.+.+++.++++++||++
T Consensus 221 ---~~~--~r~~~~~~----------~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 221 ---FWL--SRFFADVW----------MLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred ---hhH--HHHhhhhh----------ccCCCHHHHHHHHHHCCCeE
Confidence 010 00111112 12346789999999999976
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.72 E-value=2.5e-17 Score=156.93 Aligned_cols=147 Identities=19% Similarity=0.279 Sum_probs=104.0
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHH--------cCCeEEEeeCCCCCCCCCc
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVD--------RGHEVLVADAVNLPYRSDF 179 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d~~~~~~~~~~ 179 (377)
..+...+..+ ++.+|||||||+|.++.. .....|+|+|+|+.++..++. .++.++.+|++++|+ +++
T Consensus 112 ~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~ 189 (322)
T PRK15068 112 DRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA 189 (322)
T ss_pred HHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence 3344444433 578999999999997632 222369999999998865432 158899999999988 889
Q ss_pred eeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCC
Q 017080 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSART 259 (377)
Q Consensus 180 fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 259 (377)
||+|+|..+++|+.+ +..+|++++++|+|||.+++.++.......... + + ...|.. ........+
T Consensus 190 FD~V~s~~vl~H~~d---p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l--~-p-~~~y~~--------~~~~~~lps 254 (322)
T PRK15068 190 FDTVFSMGVLYHRRS---PLDHLKQLKDQLVPGGELVLETLVIDGDENTVL--V-P-GDRYAK--------MRNVYFIPS 254 (322)
T ss_pred cCEEEECChhhccCC---HHHHHHHHHHhcCCCcEEEEEEEEecCCCcccc--C-c-hhHHhc--------CccceeCCC
Confidence 999999999999999 889999999999999999998754332211100 0 0 001100 000111347
Q ss_pred cccHHhHhhcCCCcc
Q 017080 260 LESIPETEDNGSEEQ 274 (377)
Q Consensus 260 ~~~l~~~l~~aGF~~ 274 (377)
.+++.++|+++||++
T Consensus 255 ~~~l~~~L~~aGF~~ 269 (322)
T PRK15068 255 VPALKNWLERAGFKD 269 (322)
T ss_pred HHHHHHHHHHcCCce
Confidence 789999999999977
No 20
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.72 E-value=4.8e-17 Score=149.13 Aligned_cols=150 Identities=15% Similarity=0.205 Sum_probs=105.3
Q ss_pred CCCCEEEEECCccCcccc----c--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLG----L--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.++.+|||||||+|.++. . .|+++++|+|+|+.|++.|+++ +++++++|+..++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 577899999999999753 2 4789999999999999999875 368899999988754 48999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHh--hh-----hCCCCCCcCCCCCCC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVE--EW-----IGPGSPRVRSPSART 259 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--~w-----~~~~~~~~~~~~~~~ 259 (377)
.++||+++.+ +..++++++++|||||.+++.++....... ...........+.. .+ ..............+
T Consensus 130 ~~l~~~~~~~-~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 207 (239)
T TIGR00740 130 FTLQFLPPED-RIALLTKIYEGLNPNGVLVLSEKFRFEDTK-INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDS 207 (239)
T ss_pred cchhhCCHHH-HHHHHHHHHHhcCCCeEEEEeecccCCCHh-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCC
Confidence 9999998644 789999999999999999999764322111 10100000000000 00 000000111245678
Q ss_pred cccHHhHhhcCCCcc
Q 017080 260 LESIPETEDNGSEEQ 274 (377)
Q Consensus 260 ~~~l~~~l~~aGF~~ 274 (377)
.+++.++++++||..
T Consensus 208 ~~~~~~~l~~aGF~~ 222 (239)
T TIGR00740 208 IETHKARLKNVGFSH 222 (239)
T ss_pred HHHHHHHHHHcCCch
Confidence 899999999999965
No 21
>PRK08317 hypothetical protein; Provisional
Probab=99.72 E-value=2.5e-17 Score=150.29 Aligned_cols=145 Identities=25% Similarity=0.325 Sum_probs=108.3
Q ss_pred CCCCCCEEEEECCccCccccc----C-CCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~----~-~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||+|||+|.++.. . +..+++|+|+|+.+++.++++ ++.+...|+..+++++++||+|++..
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 467788999999999997532 3 678999999999999998875 47888999988888889999999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+++ +..+++++.++|||||.+++.++........ .............|... .........+.++|
T Consensus 96 ~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l 164 (241)
T PRK08317 96 VLQHLED---PARALAEIARVLRPGGRVVVLDTDWDTLVWH--SGDRALMRKILNFWSDH------FADPWLGRRLPGLF 164 (241)
T ss_pred hhhccCC---HHHHHHHHHHHhcCCcEEEEEecCCCceeec--CCChHHHHHHHHHHHhc------CCCCcHHHHHHHHH
Confidence 9999999 8899999999999999999987542211000 00011122233333321 12233446799999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||.+
T Consensus 165 ~~aGf~~ 171 (241)
T PRK08317 165 REAGLTD 171 (241)
T ss_pred HHcCCCc
Confidence 9999976
No 22
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.71 E-value=2.1e-17 Score=147.43 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=105.7
Q ss_pred CCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc---------C----CeEEEeeCCCCCCCCCceeEEEecc
Q 017080 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---------G----HEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~---------~----~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
|++|||+|||+|.++.- ..++.|+|+|+|+.|++.|+++ + +++...|++.+ .+.||+|+|..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence 47899999999998752 5678999999999999999987 1 45666676665 34599999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+.| +..++..+.++|||||.++|++.+...... .. .-+...+...|.. .....+..+.+++++..++
T Consensus 167 vleHV~d---p~~~l~~l~~~lkP~G~lfittinrt~lS~--~~--~i~~~E~vl~ivp--~Gth~~ekfi~p~e~~~~l 237 (282)
T KOG1270|consen 167 VLEHVKD---PQEFLNCLSALLKPNGRLFITTINRTILSF--AG--TIFLAEIVLRIVP--KGTHTWEKFINPEELTSIL 237 (282)
T ss_pred HHHHHhC---HHHHHHHHHHHhCCCCceEeeehhhhHHHh--hc--cccHHHHHHHhcC--CCCcCHHHcCCHHHHHHHH
Confidence 9999999 899999999999999999999876432110 00 0112233333332 1222346788999999999
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+.+|+.+
T Consensus 238 ~~~~~~v 244 (282)
T KOG1270|consen 238 NANGAQV 244 (282)
T ss_pred HhcCcch
Confidence 9999866
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.71 E-value=5.1e-17 Score=138.47 Aligned_cols=137 Identities=28% Similarity=0.423 Sum_probs=102.8
Q ss_pred CCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~V~~~ 186 (377)
.++.+|||+|||+|.++. ..++.+++|+|+|+.|++.|+++ +++|.++|+.+++ ++ +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 357899999999999642 36789999999999999999984 5899999999976 55 899999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
.+++|+.+ +..+++++.++|+|||.+++.++.........+... ...+...|.... ... ..+++..+
T Consensus 81 ~~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~--~~~~~~~~ 147 (152)
T PF13847_consen 81 GVLHHFPD---PEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEEL---MNLYSEVWSMIY-----IGN--DKEEWKYI 147 (152)
T ss_dssp STGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHH---HHHHHHHHHHCC----------CCCGHHHH
T ss_pred CchhhccC---HHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHH---HHHHHHHhhhhh-----ccc--CHHHHHHH
Confidence 99999998 889999999999999999999876322211111111 112233333221 111 77889999
Q ss_pred hhcCC
Q 017080 267 EDNGS 271 (377)
Q Consensus 267 l~~aG 271 (377)
+++||
T Consensus 148 ~~~ag 152 (152)
T PF13847_consen 148 LEEAG 152 (152)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 99998
No 24
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.71 E-value=3.9e-17 Score=154.12 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=99.0
Q ss_pred CCCCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHH---c-----CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVD---R-----GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~---~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.++.+|||||||+|.++.. ..+ ..|+|+|+|+.|+..++. . ++.+...++++++. ..+||+|++.+++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchh
Confidence 4578999999999997532 233 379999999999865432 1 46678888888875 3589999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (377)
+|+++ +..+|++++++|||||.+++.+........... .+. ..+. .+ .......+.+++..+|++
T Consensus 199 ~H~~d---p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l---~p~-~ry~-k~-------~nv~flpS~~~L~~~L~~ 263 (314)
T TIGR00452 199 YHRKS---PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVL---VPK-DRYA-KM-------KNVYFIPSVSALKNWLEK 263 (314)
T ss_pred hccCC---HHHHHHHHHHhcCCCCEEEEEEEEecCcccccc---Cch-HHHH-hc-------cccccCCCHHHHHHHHHH
Confidence 99999 889999999999999999998765432211110 000 0010 00 001123577899999999
Q ss_pred CCCccc
Q 017080 270 GSEEQG 275 (377)
Q Consensus 270 aGF~~~ 275 (377)
+||++.
T Consensus 264 aGF~~V 269 (314)
T TIGR00452 264 VGFENF 269 (314)
T ss_pred CCCeEE
Confidence 999773
No 25
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=137.65 Aligned_cols=128 Identities=23% Similarity=0.347 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhCcccccccccchHHHHHHHhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc---
Q 017080 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--- 161 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--- 161 (377)
......+|+..+..|...-+...+ .++ .......|||||||||..... .|+..|+++|+++.|-+.+.+.
T Consensus 46 ~~~ft~~yne~~~~ykrelFs~i~---~~~-gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E 121 (252)
T KOG4300|consen 46 NSNFTSIYNEIADSYKRELFSGIY---YFL-GKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAE 121 (252)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhH---HHh-cccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhh
Confidence 344455677777766322222211 122 112234689999999997765 5788999999999999888765
Q ss_pred ----CCe-EEEeeCCCCC-CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 162 ----GHE-VLVADAVNLP-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 162 ----~~~-~~~~d~~~~~-~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++. |++++.+++| ++++++|.|++..+|....+ +.+.|+++.|+|||||++++.+...
T Consensus 122 ~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~---~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 122 KKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVED---PVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred ccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCC---HHHHHHHHHHhcCCCcEEEEEeccc
Confidence 454 8999999998 89999999999999999999 8999999999999999999987553
No 26
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.70 E-value=2.1e-17 Score=142.44 Aligned_cols=148 Identities=23% Similarity=0.352 Sum_probs=119.6
Q ss_pred HhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-C-CCCCCceeEEEeccchhh
Q 017080 117 LNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-L-PYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~-~~~~~~fD~V~~~~~l~h 191 (377)
...++||++|||+|||.|.++.. ..++...|+|+++..+..+.++++.++++|++. + .|++++||.||++.+|++
T Consensus 8 ~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 8 AEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred HHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 34568999999999999998753 678899999999999999999999999999987 4 389999999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCc--cchhh-hhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhh
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ--EDKSL-VTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETED 268 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~ 268 (377)
+.+ |..+|+|+.|+ |...+++.++... ....+ +...+|.+..+...|+.. ...++.+..+++++.+
T Consensus 88 ~~~---P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdT-----PNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 88 VRR---PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDT-----PNIHLCTIKDFEDLCR 156 (193)
T ss_pred HhH---HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCC-----CCcccccHHHHHHHHH
Confidence 998 89999999877 4466777666432 22222 255677777777888762 2245788899999999
Q ss_pred cCCCccc
Q 017080 269 NGSEEQG 275 (377)
Q Consensus 269 ~aGF~~~ 275 (377)
+.|+.+.
T Consensus 157 ~~~i~I~ 163 (193)
T PF07021_consen 157 ELGIRIE 163 (193)
T ss_pred HCCCEEE
Confidence 9999773
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.69 E-value=2e-16 Score=159.33 Aligned_cols=137 Identities=25% Similarity=0.354 Sum_probs=106.8
Q ss_pred CCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 120 LPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
+.++.+|||||||+|..+. ...+++|+|+|+|+.+++.|+++ ++.|.++|+...++++++||+|++..+++
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 4678899999999997542 23478999999999999999775 46889999999888889999999999999
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a 270 (377)
|+++ +..++++++++|||||.+++.++........ ..+ ..+... ......+.+++.++++++
T Consensus 344 h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~---------~~~-~~~~~~-----~g~~~~~~~~~~~~l~~a 405 (475)
T PLN02336 344 HIQD---KPALFRSFFKWLKPGGKVLISDYCRSPGTPS---------PEF-AEYIKQ-----RGYDLHDVQAYGQMLKDA 405 (475)
T ss_pred ccCC---HHHHHHHHHHHcCCCeEEEEEEeccCCCCCc---------HHH-HHHHHh-----cCCCCCCHHHHHHHHHHC
Confidence 9999 8899999999999999999998764321100 001 011110 012356778899999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||.+
T Consensus 406 GF~~ 409 (475)
T PLN02336 406 GFDD 409 (475)
T ss_pred CCee
Confidence 9966
No 28
>PRK06202 hypothetical protein; Provisional
Probab=99.68 E-value=2.9e-16 Score=143.32 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=107.8
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCcccc--------cCCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCC
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRS 177 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~--------~~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~ 177 (377)
+..+........++.+|||||||+|.++. ..++.+|+|+|+|+.|++.|+++ ++++.+.++..++.++
T Consensus 48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~ 127 (232)
T PRK06202 48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEG 127 (232)
T ss_pred HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccC
Confidence 33443333334567899999999998642 13557999999999999999886 5778888888877778
Q ss_pred CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCC
Q 017080 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSA 257 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 257 (377)
++||+|+++.++||+++++ ...+++++.++++ |.+++.++.......... ...........+...........+
T Consensus 128 ~~fD~V~~~~~lhh~~d~~-~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~s~~~~ 201 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAE-VVRLLADSAALAR--RLVLHNDLIRSRLAYALF---WAGTRLLSRSSFVHTDGLLSVRRS 201 (232)
T ss_pred CCccEEEECCeeecCChHH-HHHHHHHHHHhcC--eeEEEeccccCHHHHHHH---HHHHHHhccCceeeccchHHHHhh
Confidence 8999999999999999854 5789999999998 566676655432111000 000000000011111122334678
Q ss_pred CCcccHHhHhhcCCCcc
Q 017080 258 RTLESIPETEDNGSEEQ 274 (377)
Q Consensus 258 ~~~~~l~~~l~~aGF~~ 274 (377)
++.+++.+++++ ||.+
T Consensus 202 ~~~~el~~ll~~-Gf~~ 217 (232)
T PRK06202 202 YTPAELAALAPQ-GWRV 217 (232)
T ss_pred cCHHHHHHHhhC-CCeE
Confidence 999999999999 9955
No 29
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.68 E-value=2.3e-16 Score=147.44 Aligned_cols=141 Identities=21% Similarity=0.248 Sum_probs=107.3
Q ss_pred hCCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
..+.++.+|||||||+|..+. ..+..+|+|+|+|+.|++.|+++ ++++..+|++++++++++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 346789999999999998531 24566899999999999999875 577889999999988899999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHh
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPE 265 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~ 265 (377)
..+++|.++ ...++++++++|||||++++.++......... .......|.. ......+.+++.+
T Consensus 153 ~~v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~-------~~~~~~~~~~------~~~~~~~~~e~~~ 216 (272)
T PRK11873 153 NCVINLSPD---KERVFKEAFRVLKPGGRFAISDVVLRGELPEE-------IRNDAELYAG------CVAGALQEEEYLA 216 (272)
T ss_pred cCcccCCCC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHH-------HHHhHHHHhc------cccCCCCHHHHHH
Confidence 999999998 78999999999999999999876543211100 0111111211 0122346678999
Q ss_pred HhhcCCCcc
Q 017080 266 TEDNGSEEQ 274 (377)
Q Consensus 266 ~l~~aGF~~ 274 (377)
+|+++||.+
T Consensus 217 ~l~~aGf~~ 225 (272)
T PRK11873 217 MLAEAGFVD 225 (272)
T ss_pred HHHHCCCCc
Confidence 999999976
No 30
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.68 E-value=5.1e-16 Score=141.77 Aligned_cols=134 Identities=26% Similarity=0.417 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHhhCcccccc-c------ccchH-HHHHHHhCCCCCCEEEEECCccCcccc----cCC-CceEEEEeCCH
Q 017080 86 LEKKYVHRVYDAIAPHFSST-R------FAKWP-KVATFLNSLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISP 152 (377)
Q Consensus 86 ~~~~~~~~~y~~~a~~y~~~-~------~~~~~-~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~-~~~v~gvD~s~ 152 (377)
..++.+.+.|+.++..|+.. . ...|. .+...+ ...++.+|||+|||+|.++. ..+ ..+++|+|+++
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 86 (239)
T PRK00216 8 EKQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWL-GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE 86 (239)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHh-CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH
Confidence 34567788899998888731 1 11222 222222 24467899999999999753 233 58999999999
Q ss_pred HHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 153 SLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 153 ~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.+++.++++ ++.+..+|+.+++++.++||+|++..+++|+++ +..+++++.++|+|||.+++.++...
T Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~---~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 87 GMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPD---IDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred HHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCC---HHHHHHHHHHhccCCcEEEEEEecCC
Confidence 999998875 367888999888877789999999999999998 88999999999999999999876543
No 31
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.68 E-value=4.4e-16 Score=140.68 Aligned_cols=180 Identities=22% Similarity=0.322 Sum_probs=117.3
Q ss_pred HHHHHhhCccccccc-------ccchHHHHHHHhCCCCCCEEEEECCccCcccc----cCCC-ceEEEEeCCHHHHHHHH
Q 017080 92 HRVYDAIAPHFSSTR-------FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICV 159 (377)
Q Consensus 92 ~~~y~~~a~~y~~~~-------~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~-~~v~gvD~s~~~~~~a~ 159 (377)
++.|+.++..|+... ...|...........++.+|||+|||+|.++. ..+. .+++|+|+++.+++.++
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 345666666666421 12232222112223467899999999999753 2443 69999999999999988
Q ss_pred Hc-----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccch--hhhhc
Q 017080 160 DR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK--SLVTK 232 (377)
Q Consensus 160 ~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~ 232 (377)
++ ++++..+|+.+.++++++||+|++..+++|+++ +..+++++.+.|+|||++++.++....... .....
T Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~ 158 (223)
T TIGR01934 82 KKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTD---IQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKF 158 (223)
T ss_pred HHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCccc---HHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHH
Confidence 75 478899999998877889999999999999998 889999999999999999998765332110 00000
Q ss_pred cccchHHHHhhhhCCCCCCc-----CCCCCCCcccHHhHhhcCCCcc
Q 017080 233 WTPLTQKYVEEWIGPGSPRV-----RSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 233 ~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+..........++....... ....+++.+++.++|+++||++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 205 (223)
T TIGR01934 159 YLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEE 205 (223)
T ss_pred HHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 00000000011111100000 0123567788999999999965
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.68 E-value=4.6e-16 Score=144.19 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=104.5
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
+.++.+|||||||+|.++. ..++.+|+|+|+|+.|++.++++ ++.++.+|+..+. ++++||+|+++.+++|++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLP 107 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCC
Confidence 4567899999999998753 36788999999999999999887 6889999998764 456999999999999999
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCc-CCCCCCCcccHHhHhhcCCC
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRV-RSPSARTLESIPETEDNGSE 272 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~l~~~l~~aGF 272 (377)
+ +..+++++.++|||||.+++..+.......... +. .-.....|........ ......+.+.+.+++..+|+
T Consensus 108 d---~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~--~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 180 (258)
T PRK01683 108 D---HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVL--MR--EVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAAC 180 (258)
T ss_pred C---HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHH--HH--HHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCC
Confidence 8 789999999999999999997543221111000 00 0000112322111111 11233456678899999998
Q ss_pred cc
Q 017080 273 EQ 274 (377)
Q Consensus 273 ~~ 274 (377)
.+
T Consensus 181 ~v 182 (258)
T PRK01683 181 RV 182 (258)
T ss_pred ce
Confidence 66
No 33
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.67 E-value=2.2e-16 Score=127.08 Aligned_cols=97 Identities=32% Similarity=0.530 Sum_probs=80.4
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeC-CCCCCCCCceeEEEecc-
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADA-VNLPYRSDFGDAAISIA- 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~-~~~~~~~~~fD~V~~~~- 187 (377)
|+.+|||||||+|.++. ..++++|+|+|+|+.+++.++++ +++++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 57899999999999753 25999999999999999999876 688999999 33332 45699999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+++++...+++.++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 66655543447899999999999999999875
No 34
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.65 E-value=7.2e-16 Score=139.81 Aligned_cols=127 Identities=21% Similarity=0.333 Sum_probs=99.0
Q ss_pred CEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 124 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.+|||||||+|.++. ..++++|+|+|+|+.+++.++++ +++++..|+...++ .++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHHHHHh
Confidence 379999999999653 35678999999999999998875 35888899876665 458999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
+++ +..++++++++|||||.+++.++.... +... ..........+.++|.++++++|
T Consensus 80 ~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~--------~~~~------------~~~~~~~~~~s~~~~~~~l~~~G 136 (224)
T smart00828 80 IKD---KMDLFSNISRHLKDGGHLVLADFIANL--------LSAI------------EHEETTSYLVTREEWAELLARNN 136 (224)
T ss_pred CCC---HHHHHHHHHHHcCCCCEEEEEEccccc--------Cccc------------cccccccccCCHHHHHHHHHHCC
Confidence 998 889999999999999999998764321 0000 00001122556788999999999
Q ss_pred Ccc
Q 017080 272 EEQ 274 (377)
Q Consensus 272 F~~ 274 (377)
|.+
T Consensus 137 f~~ 139 (224)
T smart00828 137 LRV 139 (224)
T ss_pred CeE
Confidence 977
No 35
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.65 E-value=1.4e-15 Score=135.27 Aligned_cols=106 Identities=25% Similarity=0.253 Sum_probs=85.2
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCcee
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGD 181 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD 181 (377)
+.+...+.. .++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.++++ ++++.+.|+.++++ +++||
T Consensus 20 ~~l~~~l~~-~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD 97 (197)
T PRK11207 20 SEVLEAVKV-VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYD 97 (197)
T ss_pred HHHHHhccc-CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcC
Confidence 345555543 3567999999999997643 4577999999999999988764 46788889887766 46799
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|++..++||++..+ +..+++++.++|||||.+++..
T Consensus 98 ~I~~~~~~~~~~~~~-~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 98 FILSTVVLMFLEAKT-IPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EEEEecchhhCCHHH-HHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999987543 7899999999999999976654
No 36
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=1.7e-15 Score=138.98 Aligned_cols=139 Identities=19% Similarity=0.287 Sum_probs=106.3
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
++.+|++|||||||.|.++.. .-+++|+|+++|++|.+.++++ ++++...|..+++ +.||.|++.+
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg 145 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG 145 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehh
Confidence 678999999999999997642 3489999999999999999885 4667777777764 4499999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+.... ...+++.++++|+|||.+++.++........ ....+...++-+ .....+...+.+..
T Consensus 146 mfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFP------gG~lPs~~~i~~~~ 211 (283)
T COG2230 146 MFEHVGKEN-YDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFP------GGELPSISEILELA 211 (283)
T ss_pred hHHHhCccc-HHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCC------CCcCCCHHHHHHHH
Confidence 999998755 8999999999999999999998775542211 122222222221 13344567788889
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||.+
T Consensus 212 ~~~~~~v 218 (283)
T COG2230 212 SEAGFVV 218 (283)
T ss_pred HhcCcEE
Confidence 9999977
No 37
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.64 E-value=6.4e-16 Score=141.84 Aligned_cols=151 Identities=20% Similarity=0.298 Sum_probs=107.4
Q ss_pred ccchHHHHHHHhCCCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHH---c---CCe--EEEeeCCCCCC
Q 017080 107 FAKWPKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVD---R---GHE--VLVADAVNLPY 175 (377)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~---~---~~~--~~~~d~~~~~~ 175 (377)
..+|.++...+..+ .|++|||||||+|.++- ...++ .|+|+|+++...-.... - ... ++...++++|.
T Consensus 101 d~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 101 DWKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN 179 (315)
T ss_pred cchHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence 34667777777655 58899999999999862 24444 79999999976544332 1 122 22246677776
Q ss_pred CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCC
Q 017080 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSP 255 (377)
Q Consensus 176 ~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 255 (377)
.+.||+|+|.+||.|..+ |...|++++..|+|||.+++.+...+.+....+- ...-+..+.+.|+
T Consensus 180 -~~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~-P~~rYa~m~nv~F---------- 244 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLV-PEDRYAKMRNVWF---------- 244 (315)
T ss_pred -cCCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEc-cCCcccCCCceEE----------
Confidence 789999999999999999 9999999999999999999998765544322111 0011222222233
Q ss_pred CCCCcccHHhHhhcCCCcc
Q 017080 256 SARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 256 ~~~~~~~l~~~l~~aGF~~ 274 (377)
..+...+..||+++||++
T Consensus 245 -iPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 245 -IPSVAALKNWLERAGFKD 262 (315)
T ss_pred -eCCHHHHHHHHHHcCCce
Confidence 246788999999999976
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.64 E-value=2.8e-16 Score=145.98 Aligned_cols=143 Identities=21% Similarity=0.336 Sum_probs=92.6
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+++|.+|||||||.|.++.. ..+++|+|+.+|+.+.+.++++ .+.+...|..+++ .+||.|++.+
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~ 135 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIE 135 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEe
Confidence 478999999999999997642 2389999999999999999876 3678888887764 3999999999
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHh
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETE 267 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l 267 (377)
+++|+.... ...+++++.++|||||.+++..+............. ...++...+-| .....+..++...+
T Consensus 136 ~~Ehvg~~~-~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~---~~~~i~kyiFP------gg~lps~~~~~~~~ 205 (273)
T PF02353_consen 136 MFEHVGRKN-YPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRS---SSDFIRKYIFP------GGYLPSLSEILRAA 205 (273)
T ss_dssp EGGGTCGGG-HHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTC---CCHHHHHHTST------TS---BHHHHHHHH
T ss_pred chhhcChhH-HHHHHHHHHHhcCCCcEEEEEecccccccchhhcCC---CceEEEEeeCC------CCCCCCHHHHHHHH
Confidence 999996544 789999999999999999998776543322110000 00222222211 12344567788888
Q ss_pred hcCCCcc
Q 017080 268 DNGSEEQ 274 (377)
Q Consensus 268 ~~aGF~~ 274 (377)
+++||++
T Consensus 206 ~~~~l~v 212 (273)
T PF02353_consen 206 EDAGLEV 212 (273)
T ss_dssp HHTT-EE
T ss_pred hcCCEEE
Confidence 9999966
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.64 E-value=1.3e-15 Score=138.93 Aligned_cols=131 Identities=23% Similarity=0.310 Sum_probs=103.4
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
.+.+|||+|||+|.++. ..+..+++|+|+|+.+++.++++ ++.++.+|+.+.++++++||+|++..+++|+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 45799999999998653 36777899999999999998876 478999999999888899999999999999998
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+..++.++.++|||||.+++.++...... . ....+.. ....+.+.+.+.+++..+ |..
T Consensus 114 ---~~~~l~~~~~~L~~~G~l~~~~~~~~~~~-~-----------~~~~~~~------~~~~~~~~~~~~~~l~~~-f~~ 171 (240)
T TIGR02072 114 ---LSQALSELARVLKPGGLLAFSTFGPGTLH-E-----------LRQSFGQ------HGLRYLSLDELKALLKNS-FEL 171 (240)
T ss_pred ---HHHHHHHHHHHcCCCcEEEEEeCCccCHH-H-----------HHHHHHH------hccCCCCHHHHHHHHHHh-cCC
Confidence 88999999999999999999977543210 0 0000100 123456778888999888 855
No 40
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.62 E-value=8.5e-16 Score=133.10 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=114.3
Q ss_pred ccccchHHHHHHHhCCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCC
Q 017080 105 TRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSD 178 (377)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~ 178 (377)
.|.+.-+++...+. +.+..+|.|+|||+|..+ +..|++.++|+|-|+.|++.|+++ +++|..+|+.++. ++.
T Consensus 14 eRtRPa~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~ 91 (257)
T COG4106 14 ERTRPARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQ 91 (257)
T ss_pred hccCcHHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCC
Confidence 34444445544443 345679999999999854 459999999999999999999888 7899999999974 567
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCC-CcCCCCC
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSP-RVRSPSA 257 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~ 257 (377)
++|+++++.+++++++ -.++|.++...|.|||++.+..+....+.......-..... .|-..... ...-...
T Consensus 92 ~~dllfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~----p~~~~l~~~~~~r~~v 164 (257)
T COG4106 92 PTDLLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEA----PFAQELGGRGLTRAPL 164 (257)
T ss_pred ccchhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcC----chhhhhCccccccCCC
Confidence 8999999999999999 78999999999999999999987654433222111000000 11111111 1112445
Q ss_pred CCcccHHhHhhcCCCcc
Q 017080 258 RTLESIPETEDNGSEEQ 274 (377)
Q Consensus 258 ~~~~~l~~~l~~aGF~~ 274 (377)
.++..+-++|...+-++
T Consensus 165 ~s~a~Yy~lLa~~~~rv 181 (257)
T COG4106 165 PSPAAYYELLAPLACRV 181 (257)
T ss_pred CCHHHHHHHhCccccee
Confidence 56677778887777655
No 41
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.62 E-value=2.1e-15 Score=136.35 Aligned_cols=146 Identities=21% Similarity=0.245 Sum_probs=102.0
Q ss_pred HHHHHhC-CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCcee
Q 017080 113 VATFLNS-LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGD 181 (377)
Q Consensus 113 ~~~~l~~-~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD 181 (377)
+...+.. ..++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.|+++ ++.+.++|+..++ ++||
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD 121 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFD 121 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcC
Confidence 4444443 45688999999999997643 3466999999999999998875 4678889988765 7899
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcc
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLE 261 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 261 (377)
+|++..+++|++... +..+++++.+++++++.+.+.... ... ... ......+.. .........++.+
T Consensus 122 ~ii~~~~l~~~~~~~-~~~~l~~i~~~~~~~~~i~~~~~~---~~~-------~~~-~~~~~~~~~-~~~~~~~~~~~~~ 188 (219)
T TIGR02021 122 IVVCMDVLIHYPASD-MAKALGHLASLTKERVIFTFAPKT---AWL-------AFL-KMIGELFPG-SSRATSAYLHPMT 188 (219)
T ss_pred EEEEhhHHHhCCHHH-HHHHHHHHHHHhCCCEEEEECCCc---hHH-------HHH-HHHHhhCcC-cccccceEEecHH
Confidence 999999999987644 788999999999877655543211 100 000 111111111 1112224456889
Q ss_pred cHHhHhhcCCCcc
Q 017080 262 SIPETEDNGSEEQ 274 (377)
Q Consensus 262 ~l~~~l~~aGF~~ 274 (377)
++.++++++||.+
T Consensus 189 ~~~~~l~~~Gf~v 201 (219)
T TIGR02021 189 DLERALGELGWKI 201 (219)
T ss_pred HHHHHHHHcCcee
Confidence 9999999999977
No 42
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.61 E-value=2e-15 Score=133.95 Aligned_cols=149 Identities=22% Similarity=0.339 Sum_probs=102.3
Q ss_pred HHHhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-C-CCCCCceeEEEeccch
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-L-PYRSDFGDAAISIAVL 189 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~-~~~~~~fD~V~~~~~l 189 (377)
.....++++.+|||||||+|.++.. ..+..++|+|+|+.+++.+++++++++++|+.+ + ++++++||+|++..++
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 3334456788999999999997642 345688999999999999988889999999976 4 3678899999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchh--hh-hccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKS--LV-TKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
+|+++ +..+|+++.|++++ +++..++....... .. ....+....+...|+ ...+..+++.+++.++
T Consensus 86 ~~~~d---~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 86 QATRN---PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWY-----NTPNIHFCTIADFEDL 154 (194)
T ss_pred HcCcC---HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCcccc-----CCCCcccCcHHHHHHH
Confidence 99999 88999999887654 44444332110000 00 000000000000111 1112457889999999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
++++||++
T Consensus 155 l~~~Gf~v 162 (194)
T TIGR02081 155 CGELNLRI 162 (194)
T ss_pred HHHCCCEE
Confidence 99999966
No 43
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.61 E-value=6.1e-15 Score=131.64 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=87.4
Q ss_pred HHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
..+..++++.+|||||||+|.++. ..++.+++|+|+|+.|++.|+++ ++.+.++|+.+ ++++++||+|++..+
T Consensus 36 ~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 36 RALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 344456778899999999999753 24678999999999999999885 67889999988 888999999999999
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++|++. ++..++++++.|++ ++.++|.++..
T Consensus 115 L~hl~p-~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 115 LIHINP-DNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hhhCCH-HHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 999974 34889999999998 56888877643
No 44
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.60 E-value=1.2e-14 Score=130.34 Aligned_cols=130 Identities=19% Similarity=0.251 Sum_probs=96.3
Q ss_pred HHHHHHHhhCcccccccccchHHHHHHHhCC--CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----
Q 017080 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSL--PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR---- 161 (377)
Q Consensus 90 ~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~---- 161 (377)
++.+.|......|+.. ...+.+..++..+ +++.+|||+|||.|..+.. ..|.+|+|+|+|+.+++.+.+.
T Consensus 2 ~Wd~ry~~~~~~w~~~--~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~ 79 (213)
T TIGR03840 2 FWHERWQEGQIGFHQS--EVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLT 79 (213)
T ss_pred hHHHHHhcCCCCCccC--CCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCC
Confidence 3556665544444321 2223344444433 5778999999999997643 5788999999999999986331
Q ss_pred ---------------CCeEEEeeCCCCCCC-CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 162 ---------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 162 ---------------~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+++++++|+.+++.. .+.||.|+...+++|++.+. +..+++.+.++|||||.+++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~-R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 80 PTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEM-RQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred cceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHH-HHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 467899999887632 46799999999999998655 7899999999999999988876643
No 45
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=1.1e-14 Score=129.38 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=83.6
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEE
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
.+...+... ++.+|||+|||+|.++.. ..+.+|+|+|+|+.|++.++++ .+.+...|+...++ +++||+|
T Consensus 21 ~l~~~~~~~-~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I 98 (195)
T TIGR00477 21 AVREAVKTV-APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFI 98 (195)
T ss_pred HHHHHhccC-CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEE
Confidence 444444433 456999999999997642 4578999999999999987654 35567777766655 4679999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++..+++|++... ...++++++++|||||++++.++.
T Consensus 99 ~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 99 FSTVVFMFLQAGR-VPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred EEecccccCCHHH-HHHHHHHHHHHhCCCcEEEEEEec
Confidence 9999999997543 789999999999999997776653
No 46
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.59 E-value=1.4e-15 Score=120.39 Aligned_cols=87 Identities=31% Similarity=0.591 Sum_probs=71.6
Q ss_pred EEEECCccCccccc-------CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEec-cchhh
Q 017080 126 VLDAGCGNGKYLGL-------NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISI-AVLHH 191 (377)
Q Consensus 126 vLDiGcG~G~~~~~-------~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~-~~l~h 191 (377)
|||+|||+|..+.. .+..+++|+|+|+.|++.++++ .++++++|+.++++.+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 79999999996532 2448999999999999999887 5799999999998888999999995 55999
Q ss_pred cCChHHHHHHHHHHHHccccCc
Q 017080 192 LSTESRRKKAIEELVRVVKKGS 213 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG 213 (377)
+.+++ ..++++++.++|||||
T Consensus 81 ~~~~~-~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEE-LEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHH-HHHHHHHHHHTEEEEE
T ss_pred CCHHH-HHHHHHHHHHHhCCCC
Confidence 87755 8999999999999998
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.58 E-value=7.4e-16 Score=121.40 Aligned_cols=86 Identities=34% Similarity=0.588 Sum_probs=55.7
Q ss_pred EEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-----C--CeEEEeeCCCCC--CCCCceeEEEeccchhhcC
Q 017080 127 LDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----G--HEVLVADAVNLP--YRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 127 LDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-----~--~~~~~~d~~~~~--~~~~~fD~V~~~~~l~h~~ 193 (377)
||||||+|.++.. .+..+++|+|+|+.|++.++++ . ......+..+.. ...++||+|++..++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999998753 6889999999999999777665 1 223333333322 1235999999999999997
Q ss_pred ChHHHHHHHHHHHHccccCcEE
Q 017080 194 TESRRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l 215 (377)
+ +..++++++++|||||+|
T Consensus 81 ~---~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D---IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----HHHHHHHHTTT-TSS-EE
T ss_pred h---HHHHHHHHHHHcCCCCCC
Confidence 7 899999999999999986
No 48
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.57 E-value=1e-14 Score=126.11 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhhCcccccccccchHHHHHHH---hCCCCCCEEEEECCccCccccc-CCC-ceEEEEeCCHHHHHHHHHc
Q 017080 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFL---NSLPSGSLVLDAGCGNGKYLGL-NPD-CFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l---~~~~~~~~vLDiGcG~G~~~~~-~~~-~~v~gvD~s~~~~~~a~~~ 161 (377)
..+++++.++...|+=-.++....++....+ ..-+.-.++||+|||+|.++.. .+. -+++++|+|+.+++.|+++
T Consensus 5 ~~~~l~~~la~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~R 84 (201)
T PF05401_consen 5 NYQLLNRELANDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARER 84 (201)
T ss_dssp HHHHHHHHHTSSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHh
Confidence 4567777777766653222322222222222 2223347999999999999764 333 4899999999999999987
Q ss_pred -----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 162 -----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 162 -----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++++.+.|+... .|+++||+|+++.+++++.+.++...+++.+...|+|||.+++..+.
T Consensus 85 l~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 85 LAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp TTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 689999999775 46899999999999999988655889999999999999999998763
No 49
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.57 E-value=2e-14 Score=136.00 Aligned_cols=177 Identities=19% Similarity=0.223 Sum_probs=108.9
Q ss_pred CChhhhHHHHHHHHHhhC-----ccccccc-------ccch------HHHHHHHhCC--CCCCEEEEECCccCccccc--
Q 017080 82 STPELEKKYVHRVYDAIA-----PHFSSTR-------FAKW------PKVATFLNSL--PSGSLVLDAGCGNGKYLGL-- 139 (377)
Q Consensus 82 ~~~~~~~~~~~~~y~~~a-----~~y~~~~-------~~~~------~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~-- 139 (377)
.....+++.+.++|++++ ..|+... ...| +.+...+... .++.+|||||||+|.++..
T Consensus 84 ~~~~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la 163 (315)
T PLN02585 84 EVGGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLA 163 (315)
T ss_pred hhHHHHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHH
Confidence 334567788888888753 3344310 1111 2334444322 2578999999999997542
Q ss_pred CCCceEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHH
Q 017080 140 NPDCFFVGCDISPSLIKICVDR------------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVR 207 (377)
Q Consensus 140 ~~~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r 207 (377)
..+.+|+|+|+|+.|++.++++ ++.|...|++.+ +++||+|+|..+++|++++. ...+++.+.+
T Consensus 164 ~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~-~~~ll~~l~~ 239 (315)
T PLN02585 164 LEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDK-ADGMIAHLAS 239 (315)
T ss_pred HCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHH-HHHHHHHHHh
Confidence 3467999999999999998876 145677776554 57899999999999998754 4567777775
Q ss_pred ccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 208 VVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 208 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+.+||. +|.. ......... .....+.|..+ .......+++.+++.++++++||++
T Consensus 240 -l~~g~l-iIs~-~p~~~~~~~-------l~~~g~~~~g~--~~~~r~y~~s~eel~~lL~~AGf~v 294 (315)
T PLN02585 240 -LAEKRL-IISF-APKTLYYDI-------LKRIGELFPGP--SKATRAYLHAEADVERALKKAGWKV 294 (315)
T ss_pred -hcCCEE-EEEe-CCcchHHHH-------HHHHHhhcCCC--CcCceeeeCCHHHHHHHHHHCCCEE
Confidence 455554 4443 211111111 01111111111 1111122457899999999999976
No 50
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.55 E-value=4.6e-14 Score=134.10 Aligned_cols=144 Identities=13% Similarity=0.160 Sum_probs=101.5
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.+.++.+|||||||+|.++ ..+|+.+++++|+ +.+++.++++ +++++.+|+.+.+++. +|+|++.
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~ 222 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFC 222 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeE
Confidence 3567789999999999975 3478899999997 7888888764 4788999998765543 6999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhH
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPET 266 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~ 266 (377)
.++|+..++. ...+|++++++|||||+++|.++.......... . ++........-........+.+++.++
T Consensus 223 ~~lh~~~~~~-~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~e~~~l 293 (306)
T TIGR02716 223 RILYSANEQL-STIMCKKAFDAMRSGGRLLILDMVIDDPENPNF-------D-YLSHYILGAGMPFSVLGFKEQARYKEI 293 (306)
T ss_pred hhhhcCChHH-HHHHHHHHHHhcCCCCEEEEEEeccCCCCCchh-------h-HHHHHHHHcccccccccCCCHHHHHHH
Confidence 9999887643 578999999999999999999875432211100 0 111111100000111223446899999
Q ss_pred hhcCCCcc
Q 017080 267 EDNGSEEQ 274 (377)
Q Consensus 267 l~~aGF~~ 274 (377)
|+++||+.
T Consensus 294 l~~aGf~~ 301 (306)
T TIGR02716 294 LESLGYKD 301 (306)
T ss_pred HHHcCCCe
Confidence 99999965
No 51
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.55 E-value=1.1e-14 Score=135.16 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=82.7
Q ss_pred CCCCEEEEECCccCcc--------cccC-----CCceEEEEeCCHHHHHHHHHc--------------------------
Q 017080 121 PSGSLVLDAGCGNGKY--------LGLN-----PDCFFVGCDISPSLIKICVDR-------------------------- 161 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~--------~~~~-----~~~~v~gvD~s~~~~~~a~~~-------------------------- 161 (377)
.++.+|+|+|||||.- .... ++.+|+|+|+|+.|++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 3457999999999961 1222 357999999999999999873
Q ss_pred --------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 162 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 162 --------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++.|.+.|+.+.+++.++||+|+|.++++|++++. ..+++++++++|+|||++++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-QRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-HHHHHHHHHHHhCCCeEEEEEC
Confidence 47889999999877789999999999999997644 6799999999999999999874
No 52
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=4.5e-14 Score=132.91 Aligned_cols=105 Identities=19% Similarity=0.171 Sum_probs=83.8
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
+...+..++ +.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ ++++...|+...++ +++||+|+
T Consensus 112 ~~~~~~~~~-~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~ 189 (287)
T PRK12335 112 VLEAVQTVK-PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFIL 189 (287)
T ss_pred HHHHhhccC-CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEE
Confidence 444443344 45999999999997642 4578999999999999988765 46677888877655 77899999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+..+++|++.+. ...+++++.++|+|||++++..+
T Consensus 190 ~~~vl~~l~~~~-~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 190 STVVLMFLNRER-IPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred EcchhhhCCHHH-HHHHHHHHHHhcCCCcEEEEEEe
Confidence 999999987543 78999999999999999777654
No 53
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.54 E-value=1.8e-14 Score=123.77 Aligned_cols=126 Identities=20% Similarity=0.176 Sum_probs=89.6
Q ss_pred EEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEE
Q 017080 146 VGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 146 ~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l 215 (377)
+|+|+|+.|++.|+++ +++++++|++++|+++++||+|++..+++|+++ +..++++++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEE
Confidence 5899999999999653 378999999999999999999999999999998 899999999999999999
Q ss_pred EEEEcCCCccchh-hhhccccchHHHHhhhhCCCCCCcCC-----CCCCCcccHHhHhhcCCCcc
Q 017080 216 LITVWAVEQEDKS-LVTKWTPLTQKYVEEWIGPGSPRVRS-----PSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 216 ~i~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~~l~~~l~~aGF~~ 274 (377)
++.++........ ....|..........+.......... ..+.+.+++.++|+++||+.
T Consensus 78 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~ 142 (160)
T PLN02232 78 SILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSS 142 (160)
T ss_pred EEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCc
Confidence 9999875432111 01111100000000111111111111 35678899999999999965
No 54
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.54 E-value=5.7e-14 Score=127.28 Aligned_cols=145 Identities=16% Similarity=0.176 Sum_probs=102.9
Q ss_pred CCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC-CCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR-SDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~h 191 (377)
.+.+|||+|||+|.++.. ..+..++|+|+|+.+++.++.+ ++++...|+.+++.. .++||+|++..+++|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 477999999999997532 3456799999999999888774 367777888776543 378999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
+.+ +..+++++.++|+|||.+++.+++.... ..... .....+...|... .......+++.+++.++++++|
T Consensus 125 ~~~---~~~~l~~~~~~L~~gG~l~i~~~~~~~~--~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 125 VPD---PQAFIRACAQLLKPGGILFFSTINRTPK--SYLLA--IVGAEYILRIVPK--GTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEecCCCch--HHHHH--HHhhhhhhhcCCC--CcCChhhcCCHHHHHHHHHHcC
Confidence 999 8899999999999999999987653211 00000 0001111112111 1112234667888999999999
Q ss_pred Cccc
Q 017080 272 EEQG 275 (377)
Q Consensus 272 F~~~ 275 (377)
|++.
T Consensus 196 ~~i~ 199 (224)
T TIGR01983 196 LRVK 199 (224)
T ss_pred Ceee
Confidence 9883
No 55
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.53 E-value=1.4e-13 Score=123.98 Aligned_cols=131 Identities=19% Similarity=0.247 Sum_probs=97.1
Q ss_pred hHHHHHHHHHhhCcccccccccchHHHHHHHh--CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHH-c
Q 017080 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLN--SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD-R 161 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~--~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~-~ 161 (377)
+.+.+.+.|+.-...|... ...+.+..++. .++++.+|||+|||.|..+.. ..|.+|+|+|+|+.+++.+.. +
T Consensus 2 ~~~~Wd~rw~~~~~~~~~~--~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~ 79 (218)
T PRK13255 2 DPDFWHEKWAENQIGFHQE--EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAEN 79 (218)
T ss_pred CHhHHHHHHcCCCCCCCCC--CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHc
Confidence 3456777786654444322 23334444443 235678999999999996642 578899999999999998643 1
Q ss_pred ------------------CCeEEEeeCCCCCCC-CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 162 ------------------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 162 ------------------~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+++.++|+.+++.. .+.||+|+...+++|++.+. +..+++.+.++|+|||.+++.+.
T Consensus 80 ~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~-R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 80 GLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEM-RERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred CCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHH-HHHHHHHHHHHcCCCCeEEEEEE
Confidence 356789999887533 36899999999999998655 78999999999999997666543
No 56
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.53 E-value=6.7e-14 Score=136.39 Aligned_cols=101 Identities=26% Similarity=0.374 Sum_probs=84.6
Q ss_pred CCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.+.++.+|||||||+|.++.. ..+++|+|+|+|+.|++.|+++ ++++...|...+ +++||.|++..+++|
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence 357889999999999997642 4578999999999999999886 356677777654 578999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+.... +..+++++.++|||||.+++.++...
T Consensus 241 vg~~~-~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 241 VGPKN-YRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CChHH-HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 97644 68999999999999999999876543
No 57
>PRK06922 hypothetical protein; Provisional
Probab=99.52 E-value=8.2e-14 Score=140.56 Aligned_cols=104 Identities=26% Similarity=0.399 Sum_probs=86.8
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~--~~~~~fD~V~~~ 186 (377)
...++.+|||||||+|.++. ..|+.+|+|+|+|+.|++.|+++ ++.++++|+.+++ +++++||+|+++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 34467899999999998642 37889999999999999999875 3567889998877 778999999999
Q ss_pred cchhhcCC----------hHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 187 AVLHHLST----------ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 187 ~~l~h~~~----------~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.++||+.+ .+++.++|++++++|||||.+++.+...
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 99997631 2337899999999999999999987543
No 58
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.52 E-value=9.9e-14 Score=139.75 Aligned_cols=133 Identities=19% Similarity=0.193 Sum_probs=100.3
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCC--CCCCCCCceeEEEeccchhh
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAV--NLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~--~~~~~~~~fD~V~~~~~l~h 191 (377)
.++.+|||||||+|.++.. ....+|+|+|+|+.|++.++.. ++.++++|+. .+++++++||+|++..+++|
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 3567999999999997643 2346999999999999887653 5788999996 35677899999999999999
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGS 271 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aG 271 (377)
+++++ +..+++++.++|||||++++.+........ + ........+.....|.+++.++|
T Consensus 116 l~~~~-~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~----------------~----~~~~~~~~~~~~~~~~~~f~~~~ 174 (475)
T PLN02336 116 LSDKE-VENLAERMVKWLKVGGYIFFRESCFHQSGD----------------S----KRKNNPTHYREPRFYTKVFKECH 174 (475)
T ss_pred CCHHH-HHHHHHHHHHhcCCCeEEEEEeccCCCCCc----------------c----cccCCCCeecChHHHHHHHHHhe
Confidence 98854 689999999999999999998754321100 0 00111122234567888999999
Q ss_pred Ccc
Q 017080 272 EEQ 274 (377)
Q Consensus 272 F~~ 274 (377)
|..
T Consensus 175 ~~~ 177 (475)
T PLN02336 175 TRD 177 (475)
T ss_pred ecc
Confidence 966
No 59
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.51 E-value=2.1e-13 Score=124.37 Aligned_cols=146 Identities=17% Similarity=0.155 Sum_probs=104.1
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-CCCCceeEEEeccchh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-YRSDFGDAAISIAVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~~fD~V~~~~~l~ 190 (377)
..++.+|||||||+|.++.. ..+..++++|+++.+++.++++ .+.+...|+...+ ..+++||+|++..+++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 45678999999999997532 3467899999999999988865 3567777776654 3457999999999999
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a 270 (377)
|+++ +..+|+.+.++|+|||.+++..+........ ... ....+...+... ....+..+++.+++.++++.+
T Consensus 126 ~~~~---~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~-~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~ 196 (233)
T PRK05134 126 HVPD---PASFVRACAKLVKPGGLVFFSTLNRNLKSYL-LAI---VGAEYVLRMLPK--GTHDYKKFIKPSELAAWLRQA 196 (233)
T ss_pred ccCC---HHHHHHHHHHHcCCCcEEEEEecCCChHHHH-HHH---hhHHHHhhhcCc--ccCchhhcCCHHHHHHHHHHC
Confidence 9999 7899999999999999999987653211000 000 001111112211 112234577888999999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||.+
T Consensus 197 Gf~~ 200 (233)
T PRK05134 197 GLEV 200 (233)
T ss_pred CCeE
Confidence 9966
No 60
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.51 E-value=7.3e-14 Score=130.49 Aligned_cols=91 Identities=35% Similarity=0.469 Sum_probs=75.7
Q ss_pred CCCEEEEECCccCccccc----CC---CceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 122 SGSLVLDAGCGNGKYLGL----NP---DCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~----~~---~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
++.+|||+|||+|.++.. .+ +..++|+|+|+.|++.|+++ ++.+.++|+.++|+++++||+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 457899999999997532 22 34899999999999999876 688999999999999999999998653
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+ ..++++.|+|||||.+++..+..
T Consensus 161 ~------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 P------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred C------CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 24688999999999999987654
No 61
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.50 E-value=1.4e-13 Score=120.87 Aligned_cols=96 Identities=22% Similarity=0.154 Sum_probs=80.8
Q ss_pred hCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
..++++.+|||+|||+|..+. ..++++|+|+|+|+.|++.++++ +++++.+|+.+++. .++||+|++.
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~ 119 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR 119 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence 345668999999999998542 36888999999999999998875 47899999998776 7799999997
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
. +.+ +..++++++++|||||.+++....
T Consensus 120 ~----~~~---~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 120 A----VAS---LSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred c----ccC---HHHHHHHHHHhcCCCeEEEEEeCC
Confidence 5 345 789999999999999999988643
No 62
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=121.32 Aligned_cols=181 Identities=21% Similarity=0.215 Sum_probs=120.9
Q ss_pred hHHHHHHHHHhhCcccccccccchHHHHHHHhCC-CCCCEEEEECCccCccc----cc--CCCceEEEEeCCHHHHHHHH
Q 017080 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNSL-PSGSLVLDAGCGNGKYL----GL--NPDCFFVGCDISPSLIKICV 159 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~-~~~~~vLDiGcG~G~~~----~~--~~~~~v~gvD~s~~~~~~a~ 159 (377)
.+.++..+|...-..|-..|....++.-.++... .+..+|||||||.|... +. .++..|.++|.||.+++..+
T Consensus 35 ~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk 114 (264)
T KOG2361|consen 35 ASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK 114 (264)
T ss_pred hhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH
Confidence 3557777777666666555554444444444321 12238999999999843 33 34489999999999999998
Q ss_pred Hc------CCeEEEeeCCC----CCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhh
Q 017080 160 DR------GHEVLVADAVN----LPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSL 229 (377)
Q Consensus 160 ~~------~~~~~~~d~~~----~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 229 (377)
++ .+...+.|+.. -+...+++|+|++.++|..++.+. ...++.+++++|||||.+++.++....-....
T Consensus 115 ~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR 193 (264)
T KOG2361|consen 115 KSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR 193 (264)
T ss_pred hccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecccchHHHHh
Confidence 87 34555556654 245678999999999999998755 89999999999999999999988754321110
Q ss_pred hhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 230 VTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 230 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.....-+. ...+.. ...-..-+|+.+++.+++.+|||..
T Consensus 194 F~~~~~i~----~nfYVR--gDGT~~YfF~~eeL~~~f~~agf~~ 232 (264)
T KOG2361|consen 194 FKKGQCIS----ENFYVR--GDGTRAYFFTEEELDELFTKAGFEE 232 (264)
T ss_pred ccCCceee----cceEEc--cCCceeeeccHHHHHHHHHhcccch
Confidence 00000000 000000 0111134889999999999999955
No 63
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.49 E-value=2.3e-13 Score=123.71 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=92.8
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
..++.+|||||||+|.++.. ..+..|+|+|+|+.|++.|+++ ++.+..+|+ +..+++||+|++..++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchh
Confidence 45678999999999997642 3456799999999999999875 367777774 3346889999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDN 269 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~ 269 (377)
+|++++. ...+++++.+.+++++.+.+ ..... .... . .....++.. .........++.+++.+++++
T Consensus 138 ~~~~~~~-~~~~l~~l~~~~~~~~~i~~--~~~~~-~~~~-------~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 204 (230)
T PRK07580 138 IHYPQED-AARMLAHLASLTRGSLIFTF--APYTP-LLAL-------L-HWIGGLFPG-PSRTTRIYPHREKGIRRALAA 204 (230)
T ss_pred hcCCHHH-HHHHHHHHHhhcCCeEEEEE--CCccH-HHHH-------H-HHhccccCC-ccCCCCccccCHHHHHHHHHH
Confidence 9988754 77899999987754443322 11110 0000 0 111111111 111122345677889999999
Q ss_pred CCCcc
Q 017080 270 GSEEQ 274 (377)
Q Consensus 270 aGF~~ 274 (377)
+||++
T Consensus 205 ~Gf~~ 209 (230)
T PRK07580 205 AGFKV 209 (230)
T ss_pred CCCce
Confidence 99976
No 64
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.47 E-value=2.3e-14 Score=125.15 Aligned_cols=164 Identities=21% Similarity=0.297 Sum_probs=117.7
Q ss_pred HHHHHHHHHhhCcccccc-----cccchHHHHHHHhCCCCC--CEEEEECCccCccccc--CCCceEEEEeCCHHHHHHH
Q 017080 88 KKYVHRVYDAIAPHFSST-----RFAKWPKVATFLNSLPSG--SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKIC 158 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~-----~~~~~~~~~~~l~~~~~~--~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a 158 (377)
..|+..+||..+..|+.. -+.....+.+.+.....| .++||+|||||..... ..-.+.+|+|||.+|+++|
T Consensus 84 ~aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA 163 (287)
T COG4976 84 SAYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKA 163 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHH
Confidence 478999999999998862 233334555666555444 7999999999998654 2334899999999999999
Q ss_pred HHcCC--eEEEeeCCCC-C-CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccc
Q 017080 159 VDRGH--EVLVADAVNL-P-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 234 (377)
Q Consensus 159 ~~~~~--~~~~~d~~~~-~-~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 234 (377)
.++++ ...++++..+ + ..+..||+|++..|+.++-+ ++.++.-+...|+|||.+.++.-....... +.
T Consensus 164 ~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~---- 235 (287)
T COG4976 164 HEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FV---- 235 (287)
T ss_pred HhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCC-ee----
Confidence 99953 3344555432 2 44678999999999999999 899999999999999999998644332210 00
Q ss_pred cchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 235 PLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 235 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.. +. .+--.+...++++++..||++
T Consensus 236 ----------l~---ps--~RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 236 ----------LG---PS--QRYAHSESYVRALLAASGLEV 260 (287)
T ss_pred ----------cc---hh--hhhccchHHHHHHHHhcCceE
Confidence 00 00 011233456889999999987
No 65
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.46 E-value=3e-13 Score=118.29 Aligned_cols=107 Identities=25% Similarity=0.307 Sum_probs=82.6
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEE
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
.+...+..++ +.++||+|||.|+.+.. ..|..|+++|+|+..++.+.+. .++..+.|+.+..++ +.||+|
T Consensus 21 ~v~~a~~~~~-~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 21 EVLEAVPLLK-PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp HHHHHCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEE
T ss_pred HHHHHHhhcC-CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEE
Confidence 4555555554 56999999999997653 6788999999999998776543 467788999887764 689999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++..+++|++.+. ...+++.+...++|||++++.++.
T Consensus 99 ~st~v~~fL~~~~-~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 99 VSTVVFMFLQREL-RPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEESSGGGS-GGG-HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEEEeccCCHHH-HHHHHHHHHhhcCCcEEEEEEEec
Confidence 9999999998755 789999999999999999987654
No 66
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.43 E-value=1.9e-12 Score=113.36 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=73.9
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
++.+|||+|||+|.++. ..+..+|+|+|+|+.|++.++++ +++++.+|+.+++ .+++||+|++.. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 47899999999998542 36778999999999999887654 4788999998864 367999999976 3
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+ ...+++.+.++|+|||.+++..
T Consensus 119 --~~---~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 --AS---LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred --hC---HHHHHHHHHHhcCCCCEEEEEc
Confidence 34 5678889999999999999874
No 67
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.42 E-value=1.3e-12 Score=113.72 Aligned_cols=99 Identities=28% Similarity=0.551 Sum_probs=81.9
Q ss_pred CCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCC--eEEEeeCCC-CCCCCCceeEEEeccchhhcCCh--
Q 017080 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGH--EVLVADAVN-LPYRSDFGDAAISIAVLHHLSTE-- 195 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~d~~~-~~~~~~~fD~V~~~~~l~h~~~~-- 195 (377)
+.-|||||||+|.-... .++...+|+|+|+.|++.|.+..+ .++.+|+-. +||+.++||.+|+..+++|+=+.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~ 130 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADK 130 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCc
Confidence 67999999999997653 677899999999999999987633 577788865 89999999999999888776321
Q ss_pred ------HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 196 ------SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 196 ------~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++..++..++.+|++|+..++..+.
T Consensus 131 s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 131 SLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred cccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 22567889999999999999998754
No 68
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.40 E-value=5.2e-13 Score=119.17 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=78.7
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeC-CCCC--CCCCceeEEEecc
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADA-VNLP--YRSDFGDAAISIA 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~-~~~~--~~~~~fD~V~~~~ 187 (377)
++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.++++ ++.++++|+ +.++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56799999999998643 36778999999999999998864 578999999 6665 6788999999976
Q ss_pred chhhcCChH-----HHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTES-----RRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~-----~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+..... ....+++++.++|||||.+++...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 543322100 036799999999999999999864
No 69
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.39 E-value=3.9e-12 Score=103.81 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=75.3
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCCCCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~-~~~~~~~fD~V~~~~ 187 (377)
+.++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.++++ ++.++..|+.. ++...++||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 4567899999999999753 35678999999999999998765 46777777765 333346899999976
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..++ ..++++++.+.|||||.+++...
T Consensus 97 ~~~~------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 97 SGGL------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cchh------HHHHHHHHHHHcCCCCEEEEEec
Confidence 5432 46899999999999999998753
No 70
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.39 E-value=2.5e-12 Score=112.56 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=77.2
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
.++.+|||+|||+|.++.. ..+.+|+|+|+|+.+++.++++ +++++.+|+.+.+ .++||+|+++..+++.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 3457899999999997632 2233899999999999998886 4667888876643 4689999999888776
Q ss_pred CChH------------------HHHHHHHHHHHccccCcEEEEEEcC
Q 017080 193 STES------------------RRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 193 ~~~~------------------~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++.. ...++++++.++|||||.+++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 5421 1357899999999999999998644
No 71
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.39 E-value=1.3e-12 Score=117.18 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=82.3
Q ss_pred chHHHHHHHhCCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------C
Q 017080 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------Y 175 (377)
Q Consensus 109 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~ 175 (377)
.+.++......++++.+|||||||+|.++.. .+...|+|+|+++ |. ...++.++++|+.+.+ +
T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~---~~~~v~~i~~D~~~~~~~~~i~~~~ 113 (209)
T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD---PIVGVDFLQGDFRDELVLKALLERV 113 (209)
T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc---CCCCcEEEecCCCChHHHHHHHHHh
Confidence 3344444444467889999999999997532 3567999999998 21 1236899999999853 5
Q ss_pred CCCceeEEEeccchhhcCChH--------HHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 176 RSDFGDAAISIAVLHHLSTES--------RRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 176 ~~~~fD~V~~~~~l~h~~~~~--------~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.+++||+|++..+.++..+.. ....+|+++.++|||||.+++.++...
T Consensus 114 ~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 114 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 678999999987766654311 014689999999999999999887643
No 72
>PRK04266 fibrillarin; Provisional
Probab=99.39 E-value=2.8e-12 Score=116.06 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=71.9
Q ss_pred hCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCC----CCCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNL----PYRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~----~~~~~~fD~V~ 184 (377)
..+.++.+|||+|||+|.++. ..+...|+|+|+++.|++.+.++ ++.++.+|+... ++ .++||+|+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~ 146 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIY 146 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEE
Confidence 356789999999999999653 23456999999999988754332 688899998752 22 35699998
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+. +.++.....+++++.++|||||.++|...
T Consensus 147 ~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 147 QD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred EC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 54 33322234679999999999999999643
No 73
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.37 E-value=7.4e-12 Score=112.54 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHhhCcccccccccchHHHHHHHhC--CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHH
Q 017080 85 ELEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVD 160 (377)
Q Consensus 85 ~~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~--~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~ 160 (377)
..+.+.+.+.|+.-...|+.... .+.+...+.. +.++.+||+.|||.|.-+.. ..|.+|+|+|+|+.+++.+.+
T Consensus 6 ~~~~~fW~~rw~~~~~~f~~~~p--np~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 6 TNNNQYWLDRWQNDDVGFCQESP--NEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred cCCHHHHHHHHhcCCCCCccCCC--CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH
Confidence 34567888888876666654332 2333333332 34568999999999996542 568899999999999999755
Q ss_pred c-------------------CCeEEEeeCCCCCCC---CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 161 R-------------------GHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 161 ~-------------------~~~~~~~d~~~~~~~---~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
. +++++++|+.+++.. .+.||+|+-..++.+++.+. +.+..+.+.++|+|||.+++.
T Consensus 84 e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~-R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 84 QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDL-RTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred HcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHH-HHHHHHHHHHHhCCCcEEEEE
Confidence 1 578999999998632 26899999999999998755 899999999999999999988
Q ss_pred EcC
Q 017080 219 VWA 221 (377)
Q Consensus 219 ~~~ 221 (377)
++.
T Consensus 163 ~~~ 165 (226)
T PRK13256 163 VME 165 (226)
T ss_pred EEe
Confidence 764
No 74
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.36 E-value=3.8e-12 Score=114.48 Aligned_cols=161 Identities=22% Similarity=0.292 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHhhCcccccccccchHHHHHHHhC--CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc
Q 017080 86 LEKKYVHRVYDAIAPHFSSTRFAKWPKVATFLNS--LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 86 ~~~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~--~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
|+.+++++.|.+-...|+..... +.+..++.. .+++.+||..|||.|.-+.. ..|.+|+|+|+|+.+++.+.+.
T Consensus 1 m~~~~W~~~w~~~~~~w~~~~~~--p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e 78 (218)
T PF05724_consen 1 MDPEFWEERWQEGQTPWDQGEPN--PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEE 78 (218)
T ss_dssp -HHHHHHHHHHTT--TT--TTST--HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCCCCCC--HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHH
Confidence 46788898998776666643322 334444433 56778999999999985432 4588999999999999998432
Q ss_pred -------------------CCeEEEeeCCCCCCCC-CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 162 -------------------GHEVLVADAVNLPYRS-DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 162 -------------------~~~~~~~d~~~~~~~~-~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+++++++|+.+++... ++||+|+-...+..++.+. +.+..+.+.++|+|||.+++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~-R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 79 NNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEM-RERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp CTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGG-HHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred hccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHH-HHHHHHHHHHHhCCCCcEEEEEEE
Confidence 2478899999976433 5899999999999998765 899999999999999996665543
Q ss_pred CCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 222 VEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
..... ..++....+.+++.+++. .+|++
T Consensus 158 ~~~~~------------------------~~GPPf~v~~~ev~~l~~-~~f~i 185 (218)
T PF05724_consen 158 YPQGE------------------------MEGPPFSVTEEEVRELFG-PGFEI 185 (218)
T ss_dssp S-CSC------------------------SSSSS----HHHHHHHHT-TTEEE
T ss_pred cCCcC------------------------CCCcCCCCCHHHHHHHhc-CCcEE
Confidence 22110 011122345678888888 88876
No 75
>PLN03075 nicotianamine synthase; Provisional
Probab=99.36 E-value=2.7e-12 Score=119.35 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=80.6
Q ss_pred CCCEEEEECCccCccc------ccCCCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 122 SGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~------~~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
++.+|+|||||.|-++ ...|+.+++|+|+++.+++.|++. +++|.++|+.+.+...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999988432 247889999999999999998874 4899999998864335789999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+++++..++ +.++++++++.|+|||.+++..
T Consensus 203 -ALi~~dk~~-k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEE-KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -ccccccccc-HHHHHHHHHHhcCCCcEEEEec
Confidence 888884322 8999999999999999999975
No 76
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.36 E-value=6.4e-12 Score=110.77 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=74.7
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++.+|||+|||+|.++. ..+..+|+++|+|+.+++.++++ +++++.+|+.. ++ .++||+|++..
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~D~v~~~~ 105 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKADAIFIGG 105 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCCCEEEECC
Confidence 45678899999999999753 36778999999999999998765 46777777642 33 46899999987
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..++ ...+++++.++|+|||.+++...
T Consensus 106 ~~~~------~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 106 SGGN------LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CccC------HHHHHHHHHHhcCCCeEEEEEEe
Confidence 6543 45789999999999999988654
No 77
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.33 E-value=2.7e-12 Score=113.85 Aligned_cols=99 Identities=23% Similarity=0.369 Sum_probs=77.8
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCceeEEEecc
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIA 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~~~~~fD~V~~~~ 187 (377)
...+|||||||+|.++ ...|+..++|+|+|+.+++.|+++ +++++++|+..++ ++++++|.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999975 347889999999999999988764 6789999997643 4567899999876
Q ss_pred chhhcCChHH-----HHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESR-----RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...|...... ...++++++++|||||.+++.+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 5444322100 15799999999999999998864
No 78
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.32 E-value=2.7e-12 Score=113.47 Aligned_cols=117 Identities=19% Similarity=0.246 Sum_probs=80.6
Q ss_pred HHHhhCcccccccccchHHHHHHHhCCCCCC-EEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-CC------
Q 017080 94 VYDAIAPHFSSTRFAKWPKVATFLNSLPSGS-LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-GH------ 163 (377)
Q Consensus 94 ~y~~~a~~y~~~~~~~~~~~~~~l~~~~~~~-~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-~~------ 163 (377)
.|....|.|. -.+...+....++. .++|+|||+|.-+.. .---+|+|+|+|+.|++.++++ ++
T Consensus 11 ~Y~~ARP~YP-------tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~ 83 (261)
T KOG3010|consen 11 DYLNARPSYP-------TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTP 83 (261)
T ss_pred HHhhcCCCCc-------HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCC
Confidence 3444455544 33344444444444 899999999954432 2234899999999999999987 22
Q ss_pred -eEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCc-EEEEEEcC
Q 017080 164 -EVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGS-LVLITVWA 221 (377)
Q Consensus 164 -~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG-~l~i~~~~ 221 (377)
.+...+..++--.+++.|+|++..++|++. .++++++++|+||+.| .+.+-.++
T Consensus 84 ~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd----le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 84 STMSSDEMVDLLGGEESVDLITAAQAVHWFD----LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ccccccccccccCCCcceeeehhhhhHHhhc----hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 222233333333389999999999999997 4799999999998776 66665544
No 79
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.32 E-value=1.1e-11 Score=111.02 Aligned_cols=91 Identities=23% Similarity=0.231 Sum_probs=73.5
Q ss_pred CCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
+.++.+|||||||+|..+. . .+..+|+++|+++.+++.++++ +++++.+|+.......++||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 4677899999999999653 1 3456999999999999988875 2678889988754456799999999
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+++|+++ ++.+.|+|||++++..
T Consensus 150 ~~~~~~~~---------~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTIPS---------ALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchhhH---------HHHHhcCcCcEEEEEE
Confidence 98877652 5778999999998865
No 80
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.31 E-value=1.6e-11 Score=117.72 Aligned_cols=104 Identities=26% Similarity=0.301 Sum_probs=82.1
Q ss_pred hCCCCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
..++++.+|||+|||+|.++. ...+..++|+|+++.|++.++.+ ++.+..+|+.++++++++||+|++.-.
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 356788999999999999753 25678999999999999988876 357889999999888889999999632
Q ss_pred hhh---cC---ChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 189 LHH---LS---TESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 189 l~h---~~---~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
... .. ..+....+++++.++|||||++++..+.
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 211 11 1122578999999999999999887653
No 81
>PHA03411 putative methyltransferase; Provisional
Probab=99.30 E-value=3.7e-11 Score=110.17 Aligned_cols=157 Identities=13% Similarity=0.048 Sum_probs=105.7
Q ss_pred hHHHHHHHHHhhCcccccccccchHHHH-HHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc
Q 017080 87 EKKYVHRVYDAIAPHFSSTRFAKWPKVA-TFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 87 ~~~~~~~~y~~~a~~y~~~~~~~~~~~~-~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
+++.+-+.|.... ......+..-+.++ .++.....+.+|||+|||+|.++. ..++.+|+|+|+|+.+++.++++
T Consensus 29 ~~~~v~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n 107 (279)
T PHA03411 29 EKEFCYNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL 107 (279)
T ss_pred cHHHHHHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh
Confidence 5666666665442 11112222223333 333333445799999999998743 23467999999999999999987
Q ss_pred --CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH-----------------HHHHHHHHHHccccCcEEEEEEcCC
Q 017080 162 --GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR-----------------RKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 162 --~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~-----------------~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++.++++|+.++. .+++||+|+++-.++|.+..+. ..++++....+|+|+|.+.+..-..
T Consensus 108 ~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 108 LPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred CcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 6889999998865 3568999999988888654321 1356677788889999766662211
Q ss_pred CccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 223 EQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
.-.+...+.++++.+|+++||..
T Consensus 187 -----------------------------~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 187 -----------------------------PYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred -----------------------------ccccccCCHHHHHHHHHhcCcEe
Confidence 01133456788999999999944
No 82
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.29 E-value=1.2e-11 Score=109.09 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=78.4
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCC
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRS 177 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~ 177 (377)
.++.+....+.++.+|||+|||+|.++. . .+..+|+|+|+|+.+ ...++.++++|+.+.+ +++
T Consensus 21 ~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 21 LQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred HHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence 3445555567889999999999999753 2 355689999999976 2236888889987643 456
Q ss_pred CceeEEEeccc--------hhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 178 DFGDAAISIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 178 ~~fD~V~~~~~--------l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++||+|++... ++|+...+....+++++.++|+|||.+++..+.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 78999998643 222222122468999999999999999997644
No 83
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=1.8e-11 Score=110.10 Aligned_cols=92 Identities=23% Similarity=0.253 Sum_probs=74.6
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.+.++.+|||||||+|.++.. .+..+|+++|+++.+++.++++ +++++.+|+...+.+.++||+|++.
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 457889999999999997532 3457999999999999999876 5789999988765567899999998
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..+++++ +.+.+.|||||++++..
T Consensus 153 ~~~~~~~---------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AAGPDIP---------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccch---------HHHHHhhCCCcEEEEEE
Confidence 7765443 34667899999988864
No 84
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.27 E-value=3.3e-11 Score=107.22 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=75.0
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~~~~fD~V~ 184 (377)
.+.++.+|||+|||+|.++. . .+..+|+++|+++.+++.++++ ++.++.+|+.+. +...+.||+|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 46688999999999998753 2 3567999999999999988765 356778888663 33346899999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+... ..+ +..+++++.++|||||++++...
T Consensus 117 ~~~~---~~~---~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 117 IGGG---SEK---LKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred ECCC---ccc---HHHHHHHHHHHcCCCcEEEEEee
Confidence 8542 234 77899999999999999987543
No 85
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.25 E-value=2.1e-11 Score=103.15 Aligned_cols=138 Identities=18% Similarity=0.223 Sum_probs=99.6
Q ss_pred hhhhHHHHHHHHHhhCcccccccc--------cchHHHHHHHh------CCCCCC-EEEEECCccCccccc----CCCce
Q 017080 84 PELEKKYVHRVYDAIAPHFSSTRF--------AKWPKVATFLN------SLPSGS-LVLDAGCGNGKYLGL----NPDCF 144 (377)
Q Consensus 84 ~~~~~~~~~~~y~~~a~~y~~~~~--------~~~~~~~~~l~------~~~~~~-~vLDiGcG~G~~~~~----~~~~~ 144 (377)
....++|+.+.|+.....|..... ....++..++. .+.... +|||+|||+|.++.. .-...
T Consensus 14 ~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~ 93 (227)
T KOG1271|consen 14 KLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSK 93 (227)
T ss_pred ccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCC
Confidence 356788999999887777764221 11123333332 123333 999999999998642 22225
Q ss_pred EEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC-----hHHHHHHHHHHHHcccc
Q 017080 145 FVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST-----ESRRKKAIEELVRVVKK 211 (377)
Q Consensus 145 v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~-----~~~~~~~l~~~~r~Lkp 211 (377)
.+|+|.|+.+++.|+.. .++|.+.|+....+..+.||+|+-.+++..+.- ..++...+..+.+.|+|
T Consensus 94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~ 173 (227)
T KOG1271|consen 94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP 173 (227)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC
Confidence 99999999999887754 389999999997788899999999888776532 12245678899999999
Q ss_pred CcEEEEEEcC
Q 017080 212 GSLVLITVWA 221 (377)
Q Consensus 212 gG~l~i~~~~ 221 (377)
||+++|..-+
T Consensus 174 ~gifvItSCN 183 (227)
T KOG1271|consen 174 GGIFVITSCN 183 (227)
T ss_pred CcEEEEEecC
Confidence 9999998543
No 86
>PTZ00146 fibrillarin; Provisional
Probab=99.24 E-value=6.2e-11 Score=109.88 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=72.7
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHH----HHHHHHHc-CCeEEEeeCCCC---CCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNL---PYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~----~~~~a~~~-~~~~~~~d~~~~---~~~~~~fD~V~~ 185 (377)
.+.++.+|||+|||+|.++.. .+...|+++|+|+. +++.++.+ |+.++..|+... ....++||+|++
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 357899999999999997532 34569999999986 55666553 799999998642 223468999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
... .++ +...++.++.++|||||.++|.
T Consensus 209 Dva---~pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 209 DVA---QPD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred eCC---Ccc--hHHHHHHHHHHhccCCCEEEEE
Confidence 774 233 1557778999999999999995
No 87
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.24 E-value=3.8e-11 Score=113.75 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=77.3
Q ss_pred CCCCCCEEEEECCccCcccc----cCC-CceEEEEeCCHHHHHHHHHc------C--CeEEEeeCCC-CCCCCC----ce
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNP-DCFFVGCDISPSLIKICVDR------G--HEVLVADAVN-LPYRSD----FG 180 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~-~~~v~gvD~s~~~~~~a~~~------~--~~~~~~d~~~-~~~~~~----~f 180 (377)
.++++.+|||+|||+|..+. ..+ +.+|+|+|+|+.|++.++++ + +.++++|+.+ ++++.. ..
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCe
Confidence 45677899999999999653 233 68999999999999888765 2 3557899876 343332 33
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++++..++++++.++ ...+|++++++|+|||.++|..-.
T Consensus 140 ~~~~~gs~~~~~~~~e-~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEE-AVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EEEEecccccCCCHHH-HHHHHHHHHHhcCCCCEEEEeccC
Confidence 4555556888887544 789999999999999999987533
No 88
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.24 E-value=7.3e-11 Score=114.15 Aligned_cols=96 Identities=21% Similarity=0.210 Sum_probs=75.0
Q ss_pred CCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
+.+|||+|||+|.+. ...|..+|+++|+|+.+++.++++ +++++..|+... +++++||+|+|+-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 469999999999964 347889999999999999999875 246677776542 34568999999866
Q ss_pred hhhc--CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHL--STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~--~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|.. .+.+...++++++.++|+|||.+++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 6543 122225689999999999999999985
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=99.24 E-value=6.5e-11 Score=104.02 Aligned_cols=99 Identities=23% Similarity=0.296 Sum_probs=74.5
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------C--CeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------G--HEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~--~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.++.+|||+|||+|.++.. ..+.+++|+|+|+.+++.++++ + +.++.+|+.+ ++.+++||+|+++..+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 5678999999999997532 2378999999999999988765 1 7788888766 3445689999987554
Q ss_pred hhcCC------------------hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 190 HHLST------------------ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ~h~~~------------------~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+... ......+++++.++|||||.+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 32110 11246789999999999999888753
No 90
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.22 E-value=5.7e-11 Score=107.11 Aligned_cols=92 Identities=24% Similarity=0.282 Sum_probs=73.3
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.+.++.+|||||||+|.++.. .+..+|+++|+++.+++.|+++ +++++.+|+.......++||+|++.
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 357889999999999997532 3356799999999999999876 5788999987754445789999998
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
....+++ ..+.+.|+|||++++..
T Consensus 154 ~~~~~~~---------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPKIP---------EALIDQLKEGGILVMPV 177 (215)
T ss_pred CCccccc---------HHHHHhcCcCcEEEEEE
Confidence 7665543 34778899999998865
No 91
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.21 E-value=4.5e-11 Score=115.17 Aligned_cols=99 Identities=20% Similarity=0.287 Sum_probs=79.0
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC--CCCCCceeEEEeccc
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL--PYRSDFGDAAISIAV 188 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~--~~~~~~fD~V~~~~~ 188 (377)
.+..+||||||+|.++ ...|+..++|+|+++.+++.+.++ ++.++.+|+..+ .++++++|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4569999999999975 347899999999999998887665 688999998764 477899999998765
Q ss_pred hhhcCChHH---HHHHHHHHHHccccCcEEEEEEc
Q 017080 189 LHHLSTESR---RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 189 l~h~~~~~~---~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..|.....+ ...++++++|+|+|||.+.+.+-
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 544333110 15899999999999999999863
No 92
>PRK14967 putative methyltransferase; Provisional
Probab=99.20 E-value=1e-10 Score=106.12 Aligned_cols=100 Identities=16% Similarity=0.079 Sum_probs=73.3
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
+.++.+|||+|||+|.++.. ....+++|+|+|+.+++.++++ ++.++.+|+... +++++||+|+++-...
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCC
Confidence 45678999999999997532 2334999999999999988775 356777787653 4577999999974322
Q ss_pred hcCC------------------hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 191 HLST------------------ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 191 h~~~------------------~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.... ......+++++.++|||||.+++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 2111 01145688899999999999998654
No 93
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.19 E-value=1.5e-10 Score=106.55 Aligned_cols=97 Identities=26% Similarity=0.337 Sum_probs=73.6
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch-
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL- 189 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l- 189 (377)
.+.+|||+|||+|.++. ..+...++|+|+|+.+++.++.+ ++.++.+|+.+ ++++++||+|+++-..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 34699999999999753 36778999999999999998875 37788889876 4557899999995322
Q ss_pred -----hhcCChH-----------------HHHHHHHHHHHccccCcEEEEEE
Q 017080 190 -----HHLSTES-----------------RRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 -----~h~~~~~-----------------~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+++.... ....+++++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2221110 02478899999999999998864
No 94
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.19 E-value=1.4e-10 Score=111.46 Aligned_cols=96 Identities=23% Similarity=0.250 Sum_probs=75.9
Q ss_pred CCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
..+|||+|||+|.++. ..|..+|+++|+|+.+++.++++ + .+++..|+... ..++||+|+++-.+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCC
Confidence 4589999999999753 36788999999999999999875 2 45666676542 36789999999888863
Q ss_pred CC--hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 193 ST--ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 193 ~~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+ ......+++++.++|||||.++|...
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 22 22268999999999999999998753
No 95
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.18 E-value=3.9e-11 Score=97.11 Aligned_cols=97 Identities=27% Similarity=0.408 Sum_probs=76.1
Q ss_pred CCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCceeEEEeccc
Q 017080 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAV 188 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~~fD~V~~~~~ 188 (377)
|.+|||+|||+|.++. .. ..+++|+|+++..++.++.+ +++++++|+.+.. +++++||+|+++-.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 5689999999999753 23 68999999999999999986 3689999998864 77899999999876
Q ss_pred hhhcCC-----hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 189 LHHLST-----ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 189 l~h~~~-----~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...... .+....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 653211 01146889999999999999998865
No 96
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.17 E-value=1.7e-10 Score=108.69 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc----C----CeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~----~----~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
..++.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ + +.+...+. .+..+++||+|+++..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecC
Confidence 35778999999999987532 3345899999999999999886 2 23333332 2334678999999865
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.++ ...++.++.++|||||.++++.+.
T Consensus 235 ~~~------l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 235 AEV------IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHH------HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 432 457899999999999999998754
No 97
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.17 E-value=5.2e-11 Score=109.85 Aligned_cols=92 Identities=23% Similarity=0.314 Sum_probs=66.4
Q ss_pred CCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
+.++.+|||+|||+|.++.. .....|+|+|+|+.+++.|+++ ++. +...++..+.+||+|+++...+.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~~- 191 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILANP- 191 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHHH-
Confidence 45788999999999986532 2223699999999999999887 231 11111222237999999754322
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
...+++++.++|||||.++++.+.
T Consensus 192 -----~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 192 -----LLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEECc
Confidence 457899999999999999998653
No 98
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.15 E-value=2.8e-10 Score=101.11 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=72.9
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~-~~~~~~~fD~V~~~ 186 (377)
.+.++.+|||+|||+|.++. ..++.+|+++|+|+.+++.++++ +++++.+|+.+ ++.....+|.++..
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 45678899999999999742 35778999999999999998875 46788888764 22212345766543
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
. ..+ ...+++++.++|+|||.+++..+.
T Consensus 117 ~----~~~---~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 117 G----GRP---IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred C----CcC---HHHHHHHHHHhcCCCeEEEEEeec
Confidence 2 123 678999999999999999998764
No 99
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.15 E-value=1.7e-10 Score=100.08 Aligned_cols=98 Identities=24% Similarity=0.342 Sum_probs=75.1
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
++.+|||+|||+|.++ ...+..+|+++|+|+.+++.++++ +++++..|..+. .++++||+|+++-.++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEEEEccchh
Confidence 5679999999999864 347777899999999999999886 266788887663 3478999999987654
Q ss_pred hcCC--hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 191 HLST--ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 191 h~~~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.-.+ .+-...++++..+.|||||.+++...
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 4332 11267899999999999999987653
No 100
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.12 E-value=2e-10 Score=109.53 Aligned_cols=101 Identities=25% Similarity=0.289 Sum_probs=74.8
Q ss_pred CCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-----------------CCeEEEeeCCCC----CCCC
Q 017080 122 SGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNL----PYRS 177 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-----------------~~~~~~~d~~~~----~~~~ 177 (377)
++.+|||+|||.|.-+.. ..-..++|+|||...++.|+++ ...|+.+|.... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 778999999999886543 4445999999999999999876 124566666542 1333
Q ss_pred --CceeEEEeccchhh-cCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 178 --DFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 178 --~~fD~V~~~~~l~h-~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
..||+|-|.+++|+ +.+++....+|+.+.+.|+|||+++.+++..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 59999999999998 5666767889999999999999999998764
No 101
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.12 E-value=1.2e-10 Score=102.65 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=73.4
Q ss_pred CCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 123 GSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
-.+.||.|+|.|+.+.. .+- -+|..+|+++..++.|++. -.++++..++++....++||+|++.+++.|+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence 36999999999998752 333 4899999999999999954 1456777778776556899999999999999
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.|++ ..++|+++...|+|+|.|++-+-
T Consensus 136 TD~d-lv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 136 TDED-LVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp -HHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHH-HHHHHHHHHHhCcCCcEEEEEec
Confidence 9977 89999999999999999999753
No 102
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.11 E-value=2.3e-10 Score=99.86 Aligned_cols=101 Identities=22% Similarity=0.277 Sum_probs=70.1
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCcccccC-CCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGLN-PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
...++..+...+++..|-|+|||.+.++... .+..|...|+-+. +-.+..+|+.+.|+++++.|++++...
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~--------n~~Vtacdia~vPL~~~svDv~VfcLS 131 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP--------NPRVTACDIANVPLEDESVDVAVFCLS 131 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS-S--------STTEEES-TTS-S--TT-EEEEEEES-
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeeccCC--------CCCEEEecCccCcCCCCceeEEEEEhh
Confidence 3467778877777889999999999998654 4568999998553 345789999999999999999998877
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
|.-. + +..+|+|+.|+|||||.+.|.+...
T Consensus 132 LMGT-n---~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 132 LMGT-N---WPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp --SS-----HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred hhCC-C---cHHHHHHHHheeccCcEEEEEEecc
Confidence 7543 3 8999999999999999999998653
No 103
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.11 E-value=3.5e-10 Score=87.92 Aligned_cols=91 Identities=35% Similarity=0.515 Sum_probs=75.6
Q ss_pred EEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCceeEEEeccchhh-c
Q 017080 125 LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH-L 192 (377)
Q Consensus 125 ~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-~~~~fD~V~~~~~l~h-~ 192 (377)
+|||+|||+|.++.. .+..+++++|+++.+++.+++. .+++...|+.+... ..++||+|++..++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 589999999997532 4667999999999999888722 47788888887653 5678999999999998 4
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.. ...+++.+.+.|+|||.+++.
T Consensus 81 ~~---~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 ED---LARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hH---HHHHHHHHHHHcCCCCEEEEE
Confidence 44 789999999999999999876
No 104
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.09 E-value=2.3e-10 Score=102.11 Aligned_cols=98 Identities=23% Similarity=0.267 Sum_probs=72.9
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCce
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFG 180 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~f 180 (377)
+.+.+. +.+|.+|||||||+|.++.. .+...|+++|+.+.+.+.|+++ ++.++.+|........++|
T Consensus 64 ~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apf 142 (209)
T PF01135_consen 64 MLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPF 142 (209)
T ss_dssp HHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SE
T ss_pred HHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCc
Confidence 334443 78999999999999997642 5666899999999999999887 6889999987644456789
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|.|++......++. .+.+.||+||++++..-
T Consensus 143 D~I~v~~a~~~ip~---------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAVPEIPE---------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBBSS--H---------HHHHTEEEEEEEEEEES
T ss_pred CEEEEeeccchHHH---------HHHHhcCCCcEEEEEEc
Confidence 99999988775543 26677899999998764
No 105
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.09 E-value=4.6e-10 Score=100.93 Aligned_cols=93 Identities=18% Similarity=0.126 Sum_probs=71.9
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.++.+|||+|||+|.++.. ....+++++|+++.+++.++++ ++++..+|+.......++||+|++...+
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 456788999999999986532 1124899999999999998875 4788888876533335789999998766
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
++++ +.+.+.|+|||.+++...
T Consensus 155 ~~~~---------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 PEIP---------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred hhhh---------HHHHHhcCCCcEEEEEEc
Confidence 6543 356789999999998765
No 106
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=1.9e-10 Score=100.84 Aligned_cols=142 Identities=17% Similarity=0.136 Sum_probs=103.5
Q ss_pred CCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 123 GSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
-..++|||||-|...+. ..+ .+++-+|.|..|++.++.. .+...++|-+.++|.++++|+|++...+||+.+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 35799999999998754 223 3889999999999999876 245688999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
++..+.++...|||+|.++-+-+..+ ...++.-. .-+.+.-+...-..+..++.-..++..+|.+|||..
T Consensus 153 ---LPg~m~~ck~~lKPDg~Fiasmlggd-TLyELR~s------lqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m 222 (325)
T KOG2940|consen 153 ---LPGSMIQCKLALKPDGLFIASMLGGD-TLYELRCS------LQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSM 222 (325)
T ss_pred ---CchHHHHHHHhcCCCccchhHHhccc-cHHHHHHH------hhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccc
Confidence 89999999999999999887765533 22221110 001111111111222233445678899999999966
No 107
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.09 E-value=5.1e-10 Score=108.64 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=74.3
Q ss_pred hCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCC-CCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYR-SDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~-~~~fD~V~~~ 186 (377)
..++++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.|+++ +++++.+|+.+..++ .++||+|+++
T Consensus 247 ~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 247 ARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred hccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEEC
Confidence 345567799999999998642 36788999999999999999886 477889998654332 4689999995
Q ss_pred cchh-----hcC----------------C-hHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLH-----HLS----------------T-ESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~-----h~~----------------~-~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-... ++. + -+-...+++++.+.|+|||.+++..
T Consensus 327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4210 000 0 0013467778888999999987754
No 108
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.07 E-value=5.9e-10 Score=102.27 Aligned_cols=100 Identities=23% Similarity=0.301 Sum_probs=82.2
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
...+..+|||||+|+|.++ ..+|+.+++.+|+ |..++.+++. +++++.+|+. -++|. +|+++..++||+++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 3456679999999999976 3499999999998 7788777665 7999999998 45655 99999999999999
Q ss_pred ChHHHHHHHHHHHHccccC--cEEEEEEcCCC
Q 017080 194 TESRRKKAIEELVRVVKKG--SLVLITVWAVE 223 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~Lkpg--G~l~i~~~~~~ 223 (377)
+++ -..+|+++++.|+|| |+|+|.+....
T Consensus 173 d~~-~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 173 DED-CVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp HHH-HHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred hHH-HHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 866 899999999999999 99999987644
No 109
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=4.7e-10 Score=104.13 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=70.6
Q ss_pred CCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc----CCeE----EEeeCCCCCCCC-CceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR----GHEV----LVADAVNLPYRS-DFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~----~~~~----~~~d~~~~~~~~-~~fD~V~~~~ 187 (377)
..+|.+|||+|||+|.++- ...|+ .|+|+|++|.+++.++++ ++.- ...+.. ..+. ++||+|+++-
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~--~~~~~~~~DvIVANI 237 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL--EVPENGPFDVIVANI 237 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch--hhcccCcccEEEehh
Confidence 3588999999999999863 34555 799999999999999987 4441 122222 2233 6999999986
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|-.+ ...+..++.+.|||||+++++-..
T Consensus 238 -LA~v-----l~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 238 -LAEV-----LVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred -hHHH-----HHHHHHHHHHHcCCCceEEEEeeh
Confidence 3222 568899999999999999999654
No 110
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.04 E-value=1.2e-09 Score=102.64 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=73.6
Q ss_pred CEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec-----
Q 017080 124 SLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI----- 186 (377)
Q Consensus 124 ~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~----- 186 (377)
.+|||+|||+|.++ ...++.+|+|+|+|+.+++.|+++ ++.++.+|+.+ ++++++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 69999999999864 236778999999999999999886 27788888866 3445589999995
Q ss_pred --------cchhhcCC---------hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 --------AVLHHLST---------ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 --------~~l~h~~~---------~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.++.|-|. -+....+++++.++|+|||++++...
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 22333221 01256889999999999999988764
No 111
>PRK04457 spermidine synthase; Provisional
Probab=99.04 E-value=9e-10 Score=102.16 Aligned_cols=103 Identities=16% Similarity=0.283 Sum_probs=76.8
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~~~~fD~V~~~ 186 (377)
.+++.+|||||||+|.++. ..|+.+++++|+++.+++.|+++ +++++.+|+.+. ....++||+|++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4567899999999999753 37889999999999999999875 367888887653 2224689999975
Q ss_pred cch-hhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 187 AVL-HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 187 ~~l-~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
..- ..++.......+++++.+.|+|||++++..+..
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 311 112211002689999999999999999976643
No 112
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.03 E-value=2.7e-09 Score=98.33 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=72.6
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCC-C-CCCCceeEEEeccch--
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNL-P-YRSDFGDAAISIAVL-- 189 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~-~-~~~~~fD~V~~~~~l-- 189 (377)
++.+|||+|||+|.++ ...++.+|+|+|+|+.+++.++++ +++++.+|+.+. + ...++||+|+++--.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3458999999999864 236778999999999999999876 578899998763 2 113579999986421
Q ss_pred ----hhcCCh-----------------HHHHHHHHHHHHccccCcEEEEEEc
Q 017080 190 ----HHLSTE-----------------SRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ----~h~~~~-----------------~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..++.+ +-...+++.+.++|||||++++...
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 111111 0034778888899999999998753
No 113
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.03 E-value=1.3e-09 Score=102.28 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=72.9
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc--
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA-- 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~-- 187 (377)
++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.|+++ ++.++.+|+.+ ++++++||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 45799999999999652 36788999999999999999876 36788899754 23466899999961
Q ss_pred ----chhhcCC----------------hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 ----VLHHLST----------------ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ----~l~h~~~----------------~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+.+++. -+....+++++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111110 01136789999999999999988653
No 114
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.03 E-value=1.2e-09 Score=100.52 Aligned_cols=103 Identities=24% Similarity=0.338 Sum_probs=83.0
Q ss_pred CCCCCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHHc-------------CCeEEEeeCCC------CCCCC
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDR-------------GHEVLVADAVN------LPYRS 177 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~------~~~~~ 177 (377)
.+++..++|+|||-|.-+.. ..+ ..++|+||+...++.|+++ .+.|+.+|... +++++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 46788999999999875543 223 3899999999999999987 25778888754 34455
Q ss_pred CceeEEEeccchhh-cCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 178 DFGDAAISIAVLHH-LSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 178 ~~fD~V~~~~~l~h-~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.+||+|-|.+++|+ +.+.+....+|+++.+.|||||+++-+.++.
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 56999999999997 6777778899999999999999988877654
No 115
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.03 E-value=1.1e-09 Score=98.84 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=79.2
Q ss_pred CCCEEEEECCccCccccc-CCC-ceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHH
Q 017080 122 SGSLVLDAGCGNGKYLGL-NPD-CFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 199 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~-~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~ 199 (377)
...++||||+|.|..+.. .+- .+|++.+.|+.|...-++++.+++ |..++.-.+.+||+|.|.++|....+ |.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg~~vl--~~~~w~~~~~~fDvIscLNvLDRc~~---P~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKGFTVL--DIDDWQQTDFKFDVISCLNVLDRCDR---PL 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCCCeEE--ehhhhhccCCceEEEeehhhhhccCC---HH
Confidence 346899999999998754 332 379999999999999999888765 44445544678999999999999988 99
Q ss_pred HHHHHHHHccccCcEEEEEEcC
Q 017080 200 KAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 200 ~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.+|+++++.|+|+|.+++....
T Consensus 169 ~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 169 TLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred HHHHHHHHHhCCCCEEEEEEEe
Confidence 9999999999999999998643
No 116
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.99 E-value=3e-09 Score=99.39 Aligned_cols=99 Identities=26% Similarity=0.294 Sum_probs=73.5
Q ss_pred CCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
..++.+|||+|||+|.++. ..+...++|+|+|+.+++.++++ ++.++.+|+... +++++||+|+++-.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npP 184 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPP 184 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCC
Confidence 3466799999999998642 35778999999999999998875 477888888552 33678999998522
Q ss_pred h------hhcCC-----------------hHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 L------HHLST-----------------ESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l------~h~~~-----------------~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. +.+.. .+....+++++.++|+|||++++..
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 1 11111 0114678889999999999999854
No 117
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.98 E-value=2.1e-09 Score=97.24 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=79.5
Q ss_pred HhCCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCceeE
Q 017080 117 LNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDA 182 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~~fD~ 182 (377)
....+...+|||+|||+|... ...+.++++|||+.+.+.+.|+++ +++++++|+.++. ....+||+
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~ 118 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDL 118 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCE
Confidence 334455789999999999953 334669999999999999999987 5899999999864 34457999
Q ss_pred EEeccchhhcCCh---------------HHHHHHHHHHHHccccCcEEEEEEc
Q 017080 183 AISIAVLHHLSTE---------------SRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 183 V~~~~~l~h~~~~---------------~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|+|+=-..-..+. -..+.+++...+.|||||.+.+.-.
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 9995332211111 0168899999999999999999854
No 118
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.98 E-value=2.1e-09 Score=101.88 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=72.3
Q ss_pred CEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc----
Q 017080 124 SLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA---- 187 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~---- 187 (377)
.+|||+|||+|.++. ..++.+|+|+|+|+.+++.|+++ +++++.+|+.+. +++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999752 36788999999999999999876 267888997652 3456899999861
Q ss_pred --ch-------hhcCC---------hHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 --VL-------HHLST---------ESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 --~l-------~h~~~---------~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+ .|-+. -+....+++++.++|+|||.+++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 11111 01136789999999999999988643
No 119
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.4e-09 Score=94.08 Aligned_cols=93 Identities=20% Similarity=0.142 Sum_probs=77.4
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.++.+|||||||+|..+.. .-..+|+.+|..+...+.|+++ |+.+.++|...-.-+..+||.|+.....
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeecc
Confidence 467899999999999997643 2223999999999999999987 6889999988754456899999999998
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..+|. . +.+.|||||++++-.-
T Consensus 149 ~~vP~-----~----Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 149 PEVPE-----A----LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCH-----H----HHHhcccCCEEEEEEc
Confidence 88876 2 5677899999999865
No 120
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=2.2e-09 Score=102.03 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=71.0
Q ss_pred CCCCCCEEEEECCccCccccc----C-CCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL----N-PDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~----~-~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.++++.+|||||||+|.++.. . ....|+++|+++.+++.|+++ ++.++.+|+...+...++||+|++.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~ 156 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT 156 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence 356788999999999997532 2 235799999999999988874 4778888887655445789999998
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..+.+++ ..+.+.|+|||.+++..
T Consensus 157 ~g~~~ip---------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEVP---------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHhH---------HHHHHhcCCCCEEEEEe
Confidence 7665543 23577899999988864
No 121
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.97 E-value=1.7e-09 Score=95.55 Aligned_cols=97 Identities=21% Similarity=0.245 Sum_probs=68.8
Q ss_pred CCCEEEEECCccCc--c-----c-c---cCC--CceEEEEeCCHHHHHHHHHc---------------------------
Q 017080 122 SGSLVLDAGCGNGK--Y-----L-G---LNP--DCFFVGCDISPSLIKICVDR--------------------------- 161 (377)
Q Consensus 122 ~~~~vLDiGcG~G~--~-----~-~---~~~--~~~v~gvD~s~~~~~~a~~~--------------------------- 161 (377)
+.-+|+.+||+||. + + . ... ..+|+|+|+|+.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 44699999999998 1 1 1 112 46999999999999999863
Q ss_pred --------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 162 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 162 --------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+.|...|+.+.+.+.+.||+|+|.+|+-++..+. ..++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-QQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-HHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-HHHHHHHHHHHcCCCCEEEEec
Confidence 36888889888444578999999999999998765 7899999999999999999973
No 122
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.97 E-value=6.8e-09 Score=91.16 Aligned_cols=144 Identities=18% Similarity=0.193 Sum_probs=100.7
Q ss_pred CCCC-EEEEECCccCcc----cccCCCceEEEEeCCHHHHHHHHH----c---CC-eEEEeeCCCC--CC------CCCc
Q 017080 121 PSGS-LVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVD----R---GH-EVLVADAVNL--PY------RSDF 179 (377)
Q Consensus 121 ~~~~-~vLDiGcG~G~~----~~~~~~~~v~gvD~s~~~~~~a~~----~---~~-~~~~~d~~~~--~~------~~~~ 179 (377)
++.. +|||||||||.. +...|.....-.|+++........ . |+ .-+..|+... +. ..++
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 4444 599999999994 455888888888998887533332 2 22 2355677654 22 2468
Q ss_pred eeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCC
Q 017080 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSART 259 (377)
Q Consensus 180 fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 259 (377)
||+|+|.+++|-++-.. ...+++.+.++|+|||.|++.-+.... ....+..+.-++.|++...+.. -..+
T Consensus 103 ~D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~------G~~ts~SN~~FD~sLr~rdp~~---GiRD 172 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRD------GKFTSESNAAFDASLRSRDPEW---GIRD 172 (204)
T ss_pred cceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccC------CEeCCcHHHHHHHHHhcCCCCc---CccC
Confidence 99999999999777655 789999999999999999998765443 2223334455566666544332 3446
Q ss_pred cccHHhHhhcCCCcc
Q 017080 260 LESIPETEDNGSEEQ 274 (377)
Q Consensus 260 ~~~l~~~l~~aGF~~ 274 (377)
.+++.++..++|++-
T Consensus 173 ~e~v~~lA~~~GL~l 187 (204)
T PF06080_consen 173 IEDVEALAAAHGLEL 187 (204)
T ss_pred HHHHHHHHHHCCCcc
Confidence 678999999999954
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=6.1e-09 Score=103.47 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=77.7
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC--CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP--YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~--~~~~~fD~V~~~ 186 (377)
.+.+|.+|||+|||+|..+. ..++..|+++|+|+.+++.++++ ++.++.+|+..++ ++.++||.|++.
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEEC
Confidence 45678999999999998642 24557999999999999998876 3578888988754 345789999953
Q ss_pred c------chh------hcCChHH-------HHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 187 A------VLH------HLSTESR-------RKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 187 ~------~l~------h~~~~~~-------~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
. ++. +....++ ..++|.++.++|||||.+++++.+..
T Consensus 321 ~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 321 APCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 2 221 1112111 24789999999999999999886543
No 124
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.96 E-value=6.2e-09 Score=89.65 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=79.8
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.+.++++++|||||||..+ ...|..+|+++|-++.+++..++| |+.++.+++.+.--...+||.|+..+
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 4678999999999999964 348999999999999999988877 67888888876321222799999998
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
. . + .+.+|+.+...|||||++++.....
T Consensus 111 g-~---~---i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 111 G-G---N---IEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred C-C---C---HHHHHHHHHHHcCcCCeEEEEeecH
Confidence 7 3 2 6789999999999999999986554
No 125
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.96 E-value=5.2e-09 Score=93.49 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=79.8
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCcccccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
...+++.+...+....|-|+|||.+.++. .....|..+|+-+. +-+++.+|+.+.|+++++.|++++...|
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~--------~~~V~~cDm~~vPl~d~svDvaV~CLSL 238 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS-SERHKVHSFDLVAV--------NERVIACDMRNVPLEDESVDVAVFCLSL 238 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh-ccccceeeeeeecC--------CCceeeccccCCcCccCcccEEEeeHhh
Confidence 34666777666677899999999999885 23347888887432 3567999999999999999999887666
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.- .+ +..++.|+.|+|+|||.++|.+...
T Consensus 239 Mg-tn---~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 239 MG-TN---LADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred hc-cc---HHHHHHHHHHHhccCceEEEEehhh
Confidence 53 34 8899999999999999999998653
No 126
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=4.4e-09 Score=104.65 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=80.3
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC----CCCCceeE
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP----YRSDFGDA 182 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~----~~~~~fD~ 182 (377)
...+|.+|||+|||+|..+. . .+...|+++|+++.+++.++++ ++.++.+|+..++ ...++||.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 45678999999999998542 2 3456999999999999988876 4678888988765 44678999
Q ss_pred EEec------cchhhcCCh------HH-------HHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 183 AISI------AVLHHLSTE------SR-------RKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 183 V~~~------~~l~h~~~~------~~-------~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
|++. +++.+-++. ++ ..++|.++.++|||||.++.++.+..
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9973 455554431 11 25889999999999999998876543
No 127
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.95 E-value=3.4e-09 Score=105.16 Aligned_cols=108 Identities=23% Similarity=0.289 Sum_probs=80.3
Q ss_pred HHhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCceeE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDA 182 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~~fD~ 182 (377)
.+..+.+|.+|||+|||+|..+ .. .++.+|+++|+|+.+++.++++ ++.+.++|+..++ +..++||.
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~ 310 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDR 310 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCE
Confidence 3345678899999999999743 22 4567999999999999998876 3578888988765 44678999
Q ss_pred EEecc------chhhcCCh-------------HHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 183 AISIA------VLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 183 V~~~~------~l~h~~~~-------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
|++.. ++..-++. ....++|.++.+.|||||.++.++.+..
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 99732 22221210 0135779999999999999999987754
No 128
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.95 E-value=5.5e-09 Score=97.46 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=76.9
Q ss_pred CCEEEEECCccCc--c-----c-cc----CCCceEEEEeCCHHHHHHHHHc-----------------------------
Q 017080 123 GSLVLDAGCGNGK--Y-----L-GL----NPDCFFVGCDISPSLIKICVDR----------------------------- 161 (377)
Q Consensus 123 ~~~vLDiGcG~G~--~-----~-~~----~~~~~v~gvD~s~~~~~~a~~~----------------------------- 161 (377)
.-+|+..||+||. + + .. ....+|+|+|+|+.+++.|++.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999998 1 1 11 1246899999999999998853
Q ss_pred ---------CCeEEEeeCCCCCCC-CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 162 ---------GHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 162 ---------~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.|.|.+.|+.+.+++ .+.||+|+|.+++.|+..+. ..++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~-~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT-QERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH-HHHHHHHHHHHhCCCcEEEEeC
Confidence 246677777765443 57899999999999997755 7999999999999999988863
No 129
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.95 E-value=3.8e-09 Score=105.48 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=78.4
Q ss_pred HhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEE
Q 017080 117 LNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
+....+|.+|||+|||+|..+ .. ..+..|+++|+|+.+++.++++ ++.+..+|+..++ ++++||+|+
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl 323 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAIL 323 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEE
Confidence 334567889999999999743 22 3456999999999999988876 3678888988765 467899999
Q ss_pred ec------cchhhc------CChH-------HHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 185 SI------AVLHHL------STES-------RRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 185 ~~------~~l~h~------~~~~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
+- +++..- .+.+ ....+|.++.+.|||||++++++.+...
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 62 222111 1111 1346899999999999999999876543
No 130
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.94 E-value=6.6e-09 Score=103.20 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=77.4
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc----CCe--E--EEeeCCCCCC--CCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----GHE--V--LVADAVNLPY--RSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~----~~~--~--~~~d~~~~~~--~~~~fD~V~ 184 (377)
...+|.+|||+|||+|..+ ...+..+|+++|+|+.+++.++++ ++. + ..+|....+. +.++||.|+
T Consensus 235 ~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 235 APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence 4567899999999999754 224467999999999999988876 432 3 4455544433 467899999
Q ss_pred e------ccchhhcCCh------H-------HHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 185 S------IAVLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 185 ~------~~~l~h~~~~------~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+ .+++++.++- + ...++|.++.++|||||.+++++.+..
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 6 3456655541 0 025799999999999999999987764
No 131
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.92 E-value=5.7e-09 Score=97.00 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=78.5
Q ss_pred HHhCCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
.+..+.++.+|||+|||+|..+. . .....|+++|+++.+++.++++ ++.+...|+..++...++||.|
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEE
Confidence 33456788999999999999642 2 3346999999999999988876 4677888887765555679999
Q ss_pred Eecc------chhhcCCh------H-------HHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 184 ISIA------VLHHLSTE------S-------RRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 184 ~~~~------~l~h~~~~------~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
++.. ++.+-++. + ....+|+++.+.|||||+++.++-+..
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9732 22221110 0 124699999999999999998876544
No 132
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.91 E-value=4.3e-09 Score=98.55 Aligned_cols=95 Identities=18% Similarity=0.265 Sum_probs=69.3
Q ss_pred CCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 120 LPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
..++.+|||+|||+|.++- ...|+ +|+|+|++|.+++.|+++ + .++.+....+ ...++||+|+++-..+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~--~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED--LVEGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC--TCCS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc--cccccCCEEEECCCHH
Confidence 4678899999999999752 33454 899999999999999987 2 2343332222 3358999999976544
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
- ...++..+.++|+|||+++++-+..
T Consensus 237 v------L~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 237 V------LLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp H------HHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred H------HHHHHHHHHHhhCCCCEEEEccccH
Confidence 2 4578888999999999999986543
No 133
>PRK00811 spermidine synthase; Provisional
Probab=98.89 E-value=5.2e-09 Score=98.23 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=73.7
Q ss_pred CCCCEEEEECCccCccccc---CC-CceEEEEeCCHHHHHHHHHc------------CCeEEEeeCCCC-CCCCCceeEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NP-DCFFVGCDISPSLIKICVDR------------GHEVLVADAVNL-PYRSDFGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~-~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~-~~~~~~fD~V 183 (377)
+.+.+||+||||+|..++. .+ ..+|+++|+++.+++.|++. +++++.+|+..+ ....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4567999999999997642 43 45899999999999999874 357788888763 3346789999
Q ss_pred EeccchhhcCChH-HHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++...-.+.+... --..+++.+.+.|+|||++++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 9965433322211 02578999999999999988754
No 134
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.87 E-value=9.7e-09 Score=103.80 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=71.0
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc--
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA-- 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~-- 187 (377)
++.+|||+|||+|.++. ..++.+|+|+|+|+.+++.|+++ ++.++.+|+.. +++.++||+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 34689999999998652 36788999999999999999876 35678888754 23456899999942
Q ss_pred ------------chhhcCC------h---HHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 ------------VLHHLST------E---SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ------------~l~h~~~------~---~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+..|-+. . +....+++++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1111110 0 114567888999999999998764
No 135
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=3e-08 Score=91.75 Aligned_cols=97 Identities=24% Similarity=0.281 Sum_probs=74.6
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc----C---CeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~----~---~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.+.+|||+|||.|.+. ...|..+++-+|+|..+++.++.+ + ..+...|..+ +..+ +||+|+|+=-+|
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPfh 235 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPFH 235 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCcc
Confidence 3459999999999863 458899999999999999999987 2 2355566554 3334 999999988877
Q ss_pred hcCChH--HHHHHHHHHHHccccCcEEEEEEc
Q 017080 191 HLSTES--RRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 191 h~~~~~--~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
-=.+.. --.+++++..+.|++||.|.|..-
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 432211 024899999999999999999864
No 136
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.83 E-value=1.1e-08 Score=88.58 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=70.4
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
+.++.+|||+|||+|.++.. ..+.+++++|+++.+++.++++ +++++.+|+.++++++.+||.|+++-.. |+
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py-~~ 89 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLPY-NI 89 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCCc-cc
Confidence 45678999999999998643 3367999999999999999876 5789999999988777789999987544 33
Q ss_pred CChHHHHHHHHHHHHc--cccCcEEEEEE
Q 017080 193 STESRRKKAIEELVRV--VKKGSLVLITV 219 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~--LkpgG~l~i~~ 219 (377)
.. ..+..+.+. +.++|.+++..
T Consensus 90 ~~-----~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 90 ST-----PILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred HH-----HHHHHHHhcCCCcceEEEEEEH
Confidence 32 334444432 44778877763
No 137
>PRK03612 spermidine synthase; Provisional
Probab=98.83 E-value=1.2e-08 Score=103.73 Aligned_cols=99 Identities=19% Similarity=0.139 Sum_probs=74.3
Q ss_pred CCCCEEEEECCccCccccc---CCC-ceEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCC-CCCCCcee
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNL-PYRSDFGD 181 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~-~~v~gvD~s~~~~~~a~~~--------------~~~~~~~d~~~~-~~~~~~fD 181 (377)
+++.+|||||||+|..++. .+. .+|+++|+++.+++.++++ +++++.+|+.+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999997642 455 6999999999999999982 467788888763 23357899
Q ss_pred EEEeccchhhcCChHH--HHHHHHHHHHccccCcEEEEEE
Q 017080 182 AAISIAVLHHLSTESR--RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~--~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|++...-...+.... -.++++.+.+.|||||.+++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999754332221000 2468999999999999988874
No 138
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=2.2e-08 Score=100.00 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=76.0
Q ss_pred CCCCCCEEEEECCccCcccc----c-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~V~ 184 (377)
.+.++.+|||+|||+|..+. . .+...|+++|+++.+++.++++ ++.++.+|+..++ ++ ++||+|+
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl 325 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKIL 325 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEE
Confidence 45678899999999998642 2 3567999999999999988875 3678889987753 33 7899999
Q ss_pred ecc------chhhcCC------hHH-------HHHHHHHHHHccccCcEEEEEEcCC
Q 017080 185 SIA------VLHHLST------ESR-------RKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 185 ~~~------~l~h~~~------~~~-------~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+.. ++.+-++ ..+ ...+|+++.++|||||.++.++-..
T Consensus 326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 753 2222121 111 2468999999999999999876543
No 139
>PHA03412 putative methyltransferase; Provisional
Probab=98.82 E-value=4.2e-08 Score=88.23 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=69.1
Q ss_pred CCCEEEEECCccCcccc----c---CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhhc
Q 017080 122 SGSLVLDAGCGNGKYLG----L---NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~---~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~ 192 (377)
.+.+|||+|||+|.++. . .+..+|+++|+++.+++.|+++ ++.+..+|+...++ +++||+|+++=-..-+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 46799999999999753 1 2456999999999999999987 57899999987654 5689999996544321
Q ss_pred CC---------hHHHHHHHHHHHHccccCcE
Q 017080 193 ST---------ESRRKKAIEELVRVVKKGSL 214 (377)
Q Consensus 193 ~~---------~~~~~~~l~~~~r~LkpgG~ 214 (377)
.. ..-...+++.+.++++||+.
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11 11145688999997777664
No 140
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.82 E-value=7.2e-08 Score=88.26 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=99.2
Q ss_pred CCCCEEEEECCccCccc----ccCCC--ceEEEEeCCHHHHHHHHHc-------CC-eEEEeeCCCCC-CC--CCceeEE
Q 017080 121 PSGSLVLDAGCGNGKYL----GLNPD--CFFVGCDISPSLIKICVDR-------GH-EVLVADAVNLP-YR--SDFGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~----~~~~~--~~v~gvD~s~~~~~~a~~~-------~~-~~~~~d~~~~~-~~--~~~fD~V 183 (377)
...-+||||.||.|++. ...|. ..|.-.|.|+..++..++. ++ +|.++|+.+.. +. +-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35579999999999964 23444 5999999999999887764 34 89999998732 11 3346999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCC-CCCCCccc
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRS-PSARTLES 262 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~ 262 (377)
+.++.++.++|.+.....|+-+.+.+.|||+++.+.-.. ++..++.. ..+. .. .....+ ....+..+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw-HPQle~IA-------r~Lt---sH-r~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW-HPQLEMIA-------RVLT---SH-RDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC-CcchHHHH-------HHHh---cc-cCCCceEEEecCHHH
Confidence 999999999998767778999999999999988875221 11111111 0110 00 000111 44567789
Q ss_pred HHhHhhcCCCcc
Q 017080 263 IPETEDNGSEEQ 274 (377)
Q Consensus 263 l~~~l~~aGF~~ 274 (377)
+.++++.|||..
T Consensus 282 mD~Lv~~aGF~K 293 (311)
T PF12147_consen 282 MDQLVEAAGFEK 293 (311)
T ss_pred HHHHHHHcCCch
Confidence 999999999954
No 141
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.80 E-value=1.7e-08 Score=106.01 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=76.5
Q ss_pred HHHHHhCCCCCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCC-CCCCc
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNLP-YRSDF 179 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~~~~ 179 (377)
...++..+.++.+|||+|||+|.++-. ..++ +|+++|+|+.+++.|+++ +++++++|+.++. -..++
T Consensus 529 ~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~ 608 (702)
T PRK11783 529 TRRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQ 608 (702)
T ss_pred HHHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCC
Confidence 334455555688999999999997532 2344 799999999999999986 2578899986632 11568
Q ss_pred eeEEEecc-----------chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 180 GDAAISIA-----------VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 180 fD~V~~~~-----------~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
||+|++.- +.....+ ...++..+.++|+|||.+++..
T Consensus 609 fDlIilDPP~f~~~~~~~~~~~~~~~---y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 609 FDLIFIDPPTFSNSKRMEDSFDVQRD---HVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred cCEEEECCCCCCCCCccchhhhHHHH---HHHHHHHHHHHcCCCCEEEEEe
Confidence 99999842 1222222 6788999999999999988864
No 142
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=3e-08 Score=89.24 Aligned_cols=100 Identities=22% Similarity=0.253 Sum_probs=84.8
Q ss_pred HHhCCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDA 182 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~ 182 (377)
....+.+|++|||.|.|+|.++. ..+..+|+.+|+-+...+.|++| ++.+..+|+.+.-+.+ .||+
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDa 166 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDA 166 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCE
Confidence 33468899999999999999753 26778999999999999999998 3778888988865544 8999
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
|+.- +++ |-.++..+.+.|||||.+++..++.++
T Consensus 167 v~LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 167 VFLD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred EEEc-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 9884 778 889999999999999999999877653
No 143
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.78 E-value=1.5e-08 Score=92.48 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=77.6
Q ss_pred HHHHHHhCCCCCCEEEEECCccCcc----ccc-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C---
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKY----LGL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P--- 174 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~----~~~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~--- 174 (377)
++...+....++.+|||||||+|.- +.. .++.+|+++|+++.+++.|+++ +++++.+|+.+. +
T Consensus 58 ~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~ 137 (234)
T PLN02781 58 LFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLL 137 (234)
T ss_pred HHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHH
Confidence 4555566667788999999999973 222 4567999999999999999886 367889998763 2
Q ss_pred --CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 175 --YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 175 --~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+.++||+|++-..- .....++..+.+.|+|||.+++-.
T Consensus 138 ~~~~~~~fD~VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 138 NNDPKPEFDFAFVDADK------PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred hCCCCCCCCEEEECCCH------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 124689999885321 126788999999999999988764
No 144
>PRK01581 speE spermidine synthase; Validated
Probab=98.77 E-value=1.8e-08 Score=96.13 Aligned_cols=99 Identities=18% Similarity=0.097 Sum_probs=72.5
Q ss_pred CCCCEEEEECCccCccccc---C-CCceEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCC-CCCCCCcee
Q 017080 121 PSGSLVLDAGCGNGKYLGL---N-PDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVN-LPYRSDFGD 181 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~-~~~~v~gvD~s~~~~~~a~~~--------------~~~~~~~d~~~-~~~~~~~fD 181 (377)
+.+.+||+||||+|..++. . +..+|++||+++.+++.|++. +++++.+|+.. +....++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4557999999999986542 3 446999999999999999951 57778888877 334457899
Q ss_pred EEEeccchh--hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 182 AAISIAVLH--HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 182 ~V~~~~~l~--h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|++...-. .......-..+++.+++.|+|||++++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999974211 10010102579999999999999987763
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.76 E-value=1.8e-08 Score=89.31 Aligned_cols=96 Identities=25% Similarity=0.368 Sum_probs=72.2
Q ss_pred EEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCC-CC--CCCCceeEEEeccchh
Q 017080 125 LVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVN-LP--YRSDFGDAAISIAVLH 190 (377)
Q Consensus 125 ~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~-~~--~~~~~fD~V~~~~~l~ 190 (377)
.+||||||.|.++ ...|+..++|+|++...+..+..+ |+.++.+|+.. +. ++++++|.|+..+.=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 8999999999975 348999999999999998777665 78999999988 32 5679999999976554
Q ss_pred hcCChHH-----HHHHHHHHHHccccCcEEEEEEc
Q 017080 191 HLSTESR-----RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 191 h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|...... -..++..++++|+|||.|.+.+-
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 4432110 25899999999999999999863
No 146
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.72 E-value=3.4e-08 Score=96.67 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=74.9
Q ss_pred HHHhCCCCCCEEEEECCccCcccc--cCCC-ceEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCC--C--CCC
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP--Y--RSD 178 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~--~~~~-~~v~gvD~s~~~~~~a~~~----~-----~~~~~~d~~~~~--~--~~~ 178 (377)
..+..+.++.+|||+|||+|.++- ...+ .+|+++|+|+.+++.++++ + ++++.+|+.++. + ..+
T Consensus 213 ~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 213 LATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred HHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCC
Confidence 344445578899999999999742 2334 4999999999999999876 2 467888987642 1 246
Q ss_pred ceeEEEeccchhhcCCh-------HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 179 FGDAAISIAVLHHLSTE-------SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~-------~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+||+|++.--.. ..+. .....++..+.++|+|||.++...-+
T Consensus 293 ~fDlVilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 293 KFDVIVMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCEEEECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 899999873321 1110 11456677788999999999876543
No 147
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.69 E-value=8e-09 Score=100.96 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=74.7
Q ss_pred CEEEEECCccCcccccCCCceEEEE-----eCCHHHHHHHHHcCCeEEEeeC--CCCCCCCCceeEEEeccchhhcCChH
Q 017080 124 SLVLDAGCGNGKYLGLNPDCFFVGC-----DISPSLIKICVDRGHEVLVADA--VNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~~~~~~v~gv-----D~s~~~~~~a~~~~~~~~~~d~--~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
..+||||||+|.|........|+.+ |..+.+++.|-++++..+.+-+ ..+||++++||+|+|..++......+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcc
Confidence 5899999999999875333333333 4555688999999887765553 56999999999999998775443322
Q ss_pred HHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 197 RRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 197 ~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.-+|-++.|+|||||+++++.+...
T Consensus 199 --g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 199 --GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --cceeehhhhhhccCceEEecCCccc
Confidence 4689999999999999999876544
No 148
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.67 E-value=3.5e-08 Score=87.05 Aligned_cols=135 Identities=17% Similarity=0.186 Sum_probs=97.6
Q ss_pred cchHHHHHHHhC--CCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC
Q 017080 108 AKWPKVATFLNS--LPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL 173 (377)
Q Consensus 108 ~~~~~~~~~l~~--~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~ 173 (377)
..|......... .+.|.+|||...|-|..+. ...|+ +|+.++-+|+.++.|+-| +++++.+|+.+.
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~ 197 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV 197 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH
Confidence 344444444443 3468999999999999864 36777 999999999999888766 578899999874
Q ss_pred --CCCCCceeEEEecc---ch-hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCC
Q 017080 174 --PYRSDFGDAAISIA---VL-HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGP 247 (377)
Q Consensus 174 --~~~~~~fD~V~~~~---~l-~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 247 (377)
.++|.+||+|+--= .+ .++- -+++.+|++|+|||||.++-.+-++....
T Consensus 198 V~~~~D~sfDaIiHDPPRfS~AgeLY----seefY~El~RiLkrgGrlFHYvG~Pg~ry--------------------- 252 (287)
T COG2521 198 VKDFDDESFDAIIHDPPRFSLAGELY----SEEFYRELYRILKRGGRLFHYVGNPGKRY--------------------- 252 (287)
T ss_pred HhcCCccccceEeeCCCccchhhhHh----HHHHHHHHHHHcCcCCcEEEEeCCCCccc---------------------
Confidence 48899999997521 11 1333 36899999999999999988875543111
Q ss_pred CCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 248 GSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
+...-...+.+.|+++||.+
T Consensus 253 -------rG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 253 -------RGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred -------ccCChhHHHHHHHHhcCcee
Confidence 11122356889999999965
No 149
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.2e-07 Score=89.43 Aligned_cols=109 Identities=27% Similarity=0.316 Sum_probs=85.1
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----C---CeEEEe-eCCCCCCCCCcee
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----G---HEVLVA-DAVNLPYRSDFGD 181 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----~---~~~~~~-d~~~~~~~~~~fD 181 (377)
+.+--++.+.+|..|||==||||.++-. .-|++++|+|++..|++-++.| + ..+... |+..+|++++++|
T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vd 266 (347)
T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVD 266 (347)
T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccc
Confidence 3344456778999999999999998743 7899999999999999999988 2 334555 9999999999999
Q ss_pred EEEeccchh------hcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 182 AAISIAVLH------HLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 182 ~V~~~~~l~------h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.|++---.. -..-++...++|+.+.++||+||++++..+
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999832211 111123367999999999999999998765
No 150
>PLN02366 spermidine synthase
Probab=98.65 E-value=8.3e-08 Score=90.77 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=73.3
Q ss_pred CCCCEEEEECCccCccccc---CCC-ceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-C-CCCCceeEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-P-YRSDFGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~-~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~-~~~~~fD~V 183 (377)
+.+.+||+||||.|..++. .++ .+|+.+|+++.+++.+++. +++++.+|+... . .++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4578999999999997642 454 5899999999999999874 477888887542 1 235789999
Q ss_pred EeccchhhcCChH-HHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++...-.+.+... --..+++.+++.|+|||.+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9965433322210 02478999999999999987753
No 151
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.65 E-value=1.1e-07 Score=87.76 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=78.5
Q ss_pred CCEEEEECCccCc--c-----c-ccC-----CCceEEEEeCCHHHHHHHHHc----------------------------
Q 017080 123 GSLVLDAGCGNGK--Y-----L-GLN-----PDCFFVGCDISPSLIKICVDR---------------------------- 161 (377)
Q Consensus 123 ~~~vLDiGcG~G~--~-----~-~~~-----~~~~v~gvD~s~~~~~~a~~~---------------------------- 161 (377)
.-+|.-+||+||. + + ... ...+|+|+|+|...++.|+.-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5799999999998 1 1 122 357999999999999999853
Q ss_pred --------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 162 --------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 162 --------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.|.|...|+...++..+.||+|+|.+|+-++..+. ..+++..++..|+|||.|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEEEEcc
Confidence 25677777766554577899999999999998765 6899999999999999999963
No 152
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.64 E-value=4.2e-08 Score=91.94 Aligned_cols=108 Identities=17% Similarity=0.101 Sum_probs=78.3
Q ss_pred cchHHHHHHHhCCCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCC
Q 017080 108 AKWPKVATFLNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR 176 (377)
Q Consensus 108 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~ 176 (377)
..++..+..-.++-.++.|||||||||.++. .....+|+++|-|..+ +.|.+. -++++.+.++++.+|
T Consensus 46 ~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP 124 (346)
T KOG1499|consen 46 LAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP 124 (346)
T ss_pred HHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC
Confidence 3334333333345678999999999999753 2344599999988766 555543 267888888887777
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
..+.|+|++-++-+++--+.....+|-.=-+.|+|||.++
T Consensus 125 ~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 125 VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 8899999998887776544435666666779999999865
No 153
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.64 E-value=7.5e-08 Score=89.87 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=69.3
Q ss_pred CCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEEe
Q 017080 122 SGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAIS 185 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~~ 185 (377)
.+.+||+||||+|.++.. .+..+++++|+++.+++.+++. ++++..+|+... ....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 445999999999986532 3356899999999999998874 255666665442 222578999998
Q ss_pred ccchhhcCChH-HHHHHHHHHHHccccCcEEEEE
Q 017080 186 IAVLHHLSTES-RRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 186 ~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
......-+... -...+++.+.+.|+|||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 65422211110 0257889999999999999886
No 154
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.64 E-value=1.3e-07 Score=83.43 Aligned_cols=115 Identities=15% Similarity=0.093 Sum_probs=91.0
Q ss_pred CEEEEECCccCccc-ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC---CCceeEEEeccchhhcCChHHHH
Q 017080 124 SLVLDAGCGNGKYL-GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR---SDFGDAAISIAVLHHLSTESRRK 199 (377)
Q Consensus 124 ~~vLDiGcG~G~~~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~---~~~fD~V~~~~~l~h~~~~~~~~ 199 (377)
.++|||||=..... ...+-.+|+.||+++.. -.+.+.|+.+.|+| +++||+|.++.||.++|++.++-
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~--------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG 124 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQH--------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRG 124 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCC--------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHH
Confidence 69999999755433 33455689999998732 44688899987764 67899999999999999998889
Q ss_pred HHHHHHHHccccCcE-----EEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 200 KAIEELVRVVKKGSL-----VLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 200 ~~l~~~~r~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
++++.+++.|+|+|. +++..+..- ....++.+.+.|.++|+.-||..
T Consensus 125 ~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C----------------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 125 EMLRRAHKFLKPPGLSLFPSLFLVLPLPC----------------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHhCCCCccCcceEEEEeCchH----------------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 999999999999999 888865431 11134566788999999999955
No 155
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.60 E-value=5e-08 Score=93.83 Aligned_cols=105 Identities=26% Similarity=0.301 Sum_probs=90.5
Q ss_pred HHHhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEE
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
.+...+.++..++|+|||-|....+ +..+.++|+|.++..+..+... ...++.+|+...|++++.||.+
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcE
Confidence 3344567888999999999987643 7889999999999988776654 3456888999999999999999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
.+..+..|.++ ...+++|++|+++|||.+...+|..
T Consensus 183 ~~ld~~~~~~~---~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 183 RFLEVVCHAPD---LEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred EEEeecccCCc---HHHHHHHHhcccCCCceEEeHHHHH
Confidence 99999999999 8999999999999999999987764
No 156
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.59 E-value=1.8e-07 Score=85.40 Aligned_cols=104 Identities=20% Similarity=0.175 Sum_probs=79.2
Q ss_pred HHHHHhCCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCC---
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR--- 176 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~--- 176 (377)
++-....+.||++|||.|.|+|.++. ..|..+|+..|..+...+.|+++ ++.+...|+....+.
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 33444578999999999999999753 27889999999999999999987 578899999753332
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHcc-ccCcEEEEEEcCCCc
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVV-KKGSLVLITVWAVEQ 224 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~L-kpgG~l~i~~~~~~~ 224 (377)
++.+|.|+.- +++ |-.++..+.++| ||||.+.+..++.++
T Consensus 111 ~~~~DavfLD-----lp~---Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ 151 (247)
T PF08704_consen 111 ESDFDAVFLD-----LPD---PWEAIPHAKRALKKPGGRICCFSPCIEQ 151 (247)
T ss_dssp TTSEEEEEEE-----SSS---GGGGHHHHHHHE-EEEEEEEEEESSHHH
T ss_pred cCcccEEEEe-----CCC---HHHHHHHHHHHHhcCCceEEEECCCHHH
Confidence 3679999885 777 778999999999 999999999887653
No 157
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.57 E-value=2.6e-07 Score=82.06 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=68.7
Q ss_pred CCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHcC-----CeEEEe-----------------------
Q 017080 121 PSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDRG-----HEVLVA----------------------- 168 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~----------------------- 168 (377)
-.+..+|||||..|.++. .+....++|+||.+..++.|+++. ....+.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 346789999999999753 244457999999999999999870 000000
Q ss_pred ---eC---------------C-CCCCCCCceeEEEeccchhh--cCC-hHHHHHHHHHHHHccccCcEEEEE
Q 017080 169 ---DA---------------V-NLPYRSDFGDAAISIAVLHH--LST-ESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 169 ---d~---------------~-~~~~~~~~fD~V~~~~~l~h--~~~-~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
|+ . -+.+....||+|+|..+--| +.. ++.+..+++++.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 0 01233467999999776443 321 233889999999999999998886
No 158
>PLN02672 methionine S-methyltransferase
Probab=98.54 E-value=3.9e-07 Score=98.20 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-----------------------CCeEEEeeCCCCCC
Q 017080 123 GSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-----------------------GHEVLVADAVNLPY 175 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-----------------------~~~~~~~d~~~~~~ 175 (377)
+.+|||+|||+|.++ ...+..+|+|+|+|+.+++.|+.+ +++|+.+|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999964 236778999999999999998665 25788888876431
Q ss_pred C-CCceeEEEeccc--------------hhhcC--------------C----h---HHHHHHHHHHHHccccCcEEEEEE
Q 017080 176 R-SDFGDAAISIAV--------------LHHLS--------------T----E---SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 176 ~-~~~fD~V~~~~~--------------l~h~~--------------~----~---~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ..+||+|+++=. .+|-| . . +-..+++.++.++|+|||++++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 236999999521 11100 0 0 003677888889999999988765
No 159
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.53 E-value=2.6e-07 Score=82.51 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=78.7
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc----ccCC-CceEEEEeCCHHHHHHHHHc--------CCeEEE-eeCCCC-C-C
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--------GHEVLV-ADAVNL-P-Y 175 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~----~~~~-~~~v~gvD~s~~~~~~a~~~--------~~~~~~-~d~~~~-~-~ 175 (377)
.++.++..+.++.+|||||++.|.-+ ...| ..+++.+|+++++.+.|+++ .+..+. +|+.+. . .
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 45566666778889999999999842 3344 67999999999999999987 255566 466542 2 3
Q ss_pred CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 176 ~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..++||+|+.-.. ..+.+.++..+.++|+|||.+++-...
T Consensus 129 ~~~~fDliFIDad------K~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 129 LDGSFDLVFIDAD------KADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred cCCCccEEEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 4689999998542 222678999999999999999887543
No 160
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=4.9e-07 Score=84.59 Aligned_cols=93 Identities=23% Similarity=0.353 Sum_probs=65.8
Q ss_pred EEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc----C---CeEEEeeCCCCCCCCCceeEEEeccc-----
Q 017080 125 LVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR----G---HEVLVADAVNLPYRSDFGDAAISIAV----- 188 (377)
Q Consensus 125 ~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~----~---~~~~~~d~~~~~~~~~~fD~V~~~~~----- 188 (377)
+|||+|||+|..+ ...+.++|+|+|+|+.+++.|+.+ + +.++..|... +. .++||+|+++=-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PL-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-cc-CCceeEEEeCCCCCCCc
Confidence 7999999999964 347778999999999999999887 4 2344444433 12 348999999521
Q ss_pred hhhcCC-----------------hHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLST-----------------ESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~-----------------~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..+... -+-...++.++.+.|+|||.+++..
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 111110 0115678888999999999988875
No 161
>PLN02476 O-methyltransferase
Probab=98.52 E-value=3.3e-07 Score=85.04 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=78.4
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CC-C-
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-LP-Y- 175 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~-~~-~- 175 (377)
+++..+....++++|||||+|+|..+ .. .++..++.+|.++...+.|+++ .++++.+|+.+ ++ +
T Consensus 108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence 45556666677889999999999853 22 3467899999999999999886 47788898866 22 1
Q ss_pred ---CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 176 ---RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 176 ---~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..++||+|+.-.- ......++..+.++|+|||.+++-.
T Consensus 188 ~~~~~~~FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred hcccCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 1368999998653 2226789999999999999988754
No 162
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.51 E-value=6.1e-07 Score=79.64 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=69.6
Q ss_pred CCCCEEEEECCccCcccc--c-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-CCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-PYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~-~~~~~~fD~V~~~~~l 189 (377)
.++.+|||+|||+|.++. . ....+|+++|.++.+++.++++ ++.++.+|+.+. +...++||+|++.=-.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 456799999999999753 2 2235999999999999988876 467888888663 2234579999997653
Q ss_pred hhcCChHHHHHHHHHHHH--ccccCcEEEEEEcC
Q 017080 190 HHLSTESRRKKAIEELVR--VVKKGSLVLITVWA 221 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r--~LkpgG~l~i~~~~ 221 (377)
.. .- ...+++.+.. +|+|+|++++....
T Consensus 132 ~~-g~---~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RK-GL---LEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CC-Ch---HHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 21 11 3455666655 37999999888643
No 163
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.51 E-value=2.6e-07 Score=88.13 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=66.4
Q ss_pred CCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-~~~~fD~V~~~~~l~h 191 (377)
++.+|||+|||+|.++.. .++.+|+|+|+|+.+++.|+++ +++|+++|+.++.. ..+.||+|++.-.-.-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G 252 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRG 252 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCC
Confidence 468999999999997632 4567999999999999999876 47899999987542 3457999998732110
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
....+.++...++|++.+++++-
T Consensus 253 ------~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 253 ------IGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred ------ccHHHHHHHHHcCCCeEEEEECC
Confidence 11223333344688888888753
No 164
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=4e-07 Score=78.35 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=61.9
Q ss_pred CCCCEEEEECCccCcccc--cCCC-ceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPD-CFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~-~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
-.|.+|+|+|||||.++- ...| ..|+|+|+.+.+++.++++ ++.|+++|+.+. .+.+|.++++=-+.-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~ 120 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGS 120 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCcc
Confidence 367899999999999852 3444 5999999999999999998 589999999887 567888888654432
Q ss_pred c---CChHHHHHHHHHHHHcc
Q 017080 192 L---STESRRKKAIEELVRVV 209 (377)
Q Consensus 192 ~---~~~~~~~~~l~~~~r~L 209 (377)
. .| ..+|....+.-
T Consensus 121 ~~rhaD----r~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHAD----RPFLLKALEIS 137 (198)
T ss_pred ccccCC----HHHHHHHHHhh
Confidence 1 33 35565555544
No 165
>PRK04148 hypothetical protein; Provisional
Probab=98.48 E-value=1.5e-06 Score=71.51 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=70.0
Q ss_pred CCCEEEEECCccCc-cccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-CCceeEEEeccchhhcCChHH
Q 017080 122 SGSLVLDAGCGNGK-YLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 122 ~~~~vLDiGcG~G~-~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~h~~~~~~ 197 (377)
++.+|||||||+|. ++.. ..+.+|+++|+++..++.++++.++++++|+.+.++. -+.+|+|.+... ..+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp-----p~e- 89 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-----PRD- 89 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC-----CHH-
Confidence 45789999999996 5432 5688999999999999999999999999999986532 356899998642 212
Q ss_pred HHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 198 RKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
....+.++++.+ |.-++|.....+
T Consensus 90 l~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 90 LQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred HHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 555566666644 456777766554
No 166
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.48 E-value=6.7e-07 Score=80.70 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=75.4
Q ss_pred CEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCceeEEEeccch
Q 017080 124 SLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAISIAVL 189 (377)
Q Consensus 124 ~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~~~~~fD~V~~~~~l 189 (377)
..+||||||.|.++ ...|...++|||+....+..|.++ |+.++..|+..+- +++++.|-|..++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 48999999999975 348999999999999887766654 5677888887631 456699999998765
Q ss_pred hhcCChHH-----HHHHHHHHHHccccCcEEEEEEc
Q 017080 190 HHLSTESR-----RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
-|-..... -..+++.+.++|+|||.|.+.+-
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 54433110 25899999999999999999863
No 167
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.47 E-value=3.4e-07 Score=81.60 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=75.4
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C---
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P--- 174 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~--- 174 (377)
+++..+.......+||||||++|.-+ .. .++++|+.+|+++...+.|++. .++++.+|+.+. +
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~ 114 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA 114 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH
Confidence 34444444556779999999999843 23 4578999999999999999875 478999998752 2
Q ss_pred --CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 175 --YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 175 --~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+.++||+|+.-..= .+....+..+.++|+|||.+++-.
T Consensus 115 ~~~~~~~fD~VFiDa~K------~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 115 NDGEEGQFDFVFIDADK------RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HTTTTTSEEEEEEESTG------GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred hccCCCceeEEEEcccc------cchhhHHHHHhhhccCCeEEEEcc
Confidence 113689999987632 226788999999999999988864
No 168
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.47 E-value=4.7e-07 Score=90.49 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=68.7
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC----CCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~----~~~~~~fD~V~~~ 186 (377)
+.++.+|||+|||+|.++.. .....|+|+|+|+.|++.|+++ +++++.+|+.+. ++.+++||+|++.
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 45778999999999997532 2346999999999999999876 478999998652 2446789999885
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-.-.- ....+..+.+ ++|++.++++.
T Consensus 375 PPr~g------~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 PPRAG------AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred cCCcC------hHHHHHHHHh-cCCCeEEEEEe
Confidence 32111 2345555555 68999999986
No 169
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.46 E-value=8.4e-07 Score=83.45 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=74.0
Q ss_pred CCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 123 GSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
-...+|+|.|.|+.+. .+|. |-|+++....+..+++. ++..+-+|+..- .|.+ |+|++.+++||+.|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~~--daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPKG--DAIWMKWILHDWTDE 252 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhcCCcceeccccccc-CCCc--CeEEEEeecccCChH
Confidence 3789999999999764 3565 55666666655554444 478888888764 4444 699999999999997
Q ss_pred HHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+ ..++|++++..|+|||.+++.+....
T Consensus 253 d-cvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 253 D-CVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred H-HHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 6 89999999999999999999986433
No 170
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.8e-07 Score=79.42 Aligned_cols=93 Identities=24% Similarity=0.237 Sum_probs=75.2
Q ss_pred CCCCCCEEEEECCccCccccc------CCCceEEEEeCCHHHHHHHHHc-----------------CCeEEEeeCCCCCC
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL------NPDCFFVGCDISPSLIKICVDR-----------------GHEVLVADAVNLPY 175 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~------~~~~~v~gvD~s~~~~~~a~~~-----------------~~~~~~~d~~~~~~ 175 (377)
++.||.+.||+|+|+|.++.. .++..++|||.-++.++.++++ .+.++++|.....-
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 578999999999999997531 5666779999999999999887 35778889888766
Q ss_pred CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 176 RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 176 ~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+||.|++... .....+++...|+|||.+++-..
T Consensus 159 e~a~YDaIhvGAa---------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 159 EQAPYDAIHVGAA---------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ccCCcceEEEccC---------ccccHHHHHHhhccCCeEEEeec
Confidence 6789999999843 23566678888999999998753
No 171
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.41 E-value=8e-07 Score=77.27 Aligned_cols=98 Identities=20% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCCCCEEEEECCccCccc---c-cCCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCC----CCCCcee
Q 017080 120 LPSGSLVLDAGCGNGKYL---G-LNPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLP----YRSDFGD 181 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~---~-~~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~----~~~~~fD 181 (377)
..++.+|||+|||+|... . .....+|+..|.++ .++..+.+ .+.+...|-.+.. ...++||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 356789999999999742 2 23677999999999 77766655 2345555543311 2346899
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+|++..+++.-.. ...+++-+.++|+|+|.+++....
T Consensus 122 ~IlasDv~Y~~~~---~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 122 VILASDVLYDEEL---FEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEEES--S-GGG---HHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEEecccchHHH---HHHHHHHHHHHhCCCCEEEEEeCE
Confidence 9999999997544 889999999999999997777644
No 172
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.37 E-value=3e-06 Score=70.27 Aligned_cols=94 Identities=34% Similarity=0.606 Sum_probs=72.8
Q ss_pred EEEECCccCc--ccc-cCCC-ceEEEEeCCHHHHHHHHHcC-------CeEEEeeCCC--CCCCC-CceeEEEeccchhh
Q 017080 126 VLDAGCGNGK--YLG-LNPD-CFFVGCDISPSLIKICVDRG-------HEVLVADAVN--LPYRS-DFGDAAISIAVLHH 191 (377)
Q Consensus 126 vLDiGcG~G~--~~~-~~~~-~~v~gvD~s~~~~~~a~~~~-------~~~~~~d~~~--~~~~~-~~fD~V~~~~~l~h 191 (377)
++|+|||+|. ++. ..+. ..++|+|+++.++..++... +.+...|... +++.. ..||++ +.....+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehh
Confidence 9999999997 333 2332 58999999999998866553 4778888776 67766 489999 6555555
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
..+ +...+.++.+.|+|+|.+++......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 544 67999999999999999999876644
No 173
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.36 E-value=3.8e-06 Score=77.00 Aligned_cols=134 Identities=15% Similarity=0.050 Sum_probs=85.3
Q ss_pred CCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc-----------------------------------C
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-----------------------------------G 162 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~-----------------------------------~ 162 (377)
..|.++||||||+-.+-. ..+.+ +|+..|.++.-++..++. .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 356799999999976532 22333 799999988776543321 1
Q ss_pred C-eEEEeeCCCCC-CCC-----CceeEEEeccchhhc-CChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccc
Q 017080 163 H-EVLVADAVNLP-YRS-----DFGDAAISIAVLHHL-STESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWT 234 (377)
Q Consensus 163 ~-~~~~~d~~~~~-~~~-----~~fD~V~~~~~l~h~-~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 234 (377)
+ .++.+|+...+ +.. ..||+|++..+++.. ++.+....+++++.++|||||.|++........ ...
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~-Y~v----- 208 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY-YMV----- 208 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE-EEE-----
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee-EEE-----
Confidence 2 46778887743 332 259999999999986 465668899999999999999999986542210 000
Q ss_pred cchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 235 PLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 235 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
..........+.+.+++.|+++||.+
T Consensus 209 --------------G~~~F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 209 --------------GGHKFPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp --------------TTEEEE---B-HHHHHHHHHHTTEEE
T ss_pred --------------CCEecccccCCHHHHHHHHHHcCCEE
Confidence 00001133456688999999999977
No 174
>PLN02823 spermine synthase
Probab=98.33 E-value=1.8e-06 Score=82.68 Aligned_cols=94 Identities=22% Similarity=0.258 Sum_probs=70.5
Q ss_pred CCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAI 184 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~ 184 (377)
+.+.+||.||+|.|..++. .+..+|+.+|+++.+++.|++. +++++.+|+... ....++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3457999999999987642 3446899999999999999875 367788888763 33457899999
Q ss_pred eccc-------hhhcCChHHHHHHHH-HHHHccccCcEEEEE
Q 017080 185 SIAV-------LHHLSTESRRKKAIE-ELVRVVKKGSLVLIT 218 (377)
Q Consensus 185 ~~~~-------l~h~~~~~~~~~~l~-~~~r~LkpgG~l~i~ 218 (377)
+-.. ..++-. ..+++ .+.+.|+|||++++.
T Consensus 182 ~D~~dp~~~~~~~~Lyt----~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLADPVEGGPCYQLYT----KSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCCCccccCcchhhcc----HHHHHHHHHHhcCCCcEEEEe
Confidence 8631 122222 46787 899999999998775
No 175
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.33 E-value=2.1e-06 Score=77.67 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=56.7
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHcCCe---EEEeeCCCCC-----CCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRGHE---VLVADAVNLP-----YRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~d~~~~~-----~~~~~fD~V~~~~~l 189 (377)
.++.+|||+|||||.++.. .....|+|+|+++.|+......+.+ +...|+.... ..-..+|+++++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~-- 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL-- 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh--
Confidence 4678999999999998643 3335899999999888763333222 3444554322 1113567666542
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...+..+.+.|+| |.+++..
T Consensus 152 ---------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 152 ---------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------HhHHHHHHHHhCc-CeEEEEc
Confidence 3467789999999 7766543
No 176
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.32 E-value=5e-06 Score=69.96 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=86.0
Q ss_pred CCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCC-----CCCCceeEEEecc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLP-----YRSDFGDAAISIA 187 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~-----~~~~~fD~V~~~~ 187 (377)
...|.-|||+|.|||-+++. .+...++.++.|++......+. +++++.+|+.++. ..+..||.|+|.-
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~l 125 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGL 125 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecc
Confidence 35677999999999998643 5666999999999999988887 7889999998864 5567899999998
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
-+-.++-.. ..++|+++...|.+||.++...+..
T Consensus 126 Pll~~P~~~-~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 126 PLLNFPMHR-RIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccccCcHHH-HHHHHHHHHHhcCCCCeEEEEEecC
Confidence 888887644 6899999999999999998887663
No 177
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.31 E-value=3.9e-06 Score=77.35 Aligned_cols=163 Identities=15% Similarity=0.051 Sum_probs=102.7
Q ss_pred HHHHHHHhhCcccccccccchHHHHHHHhCCC-------CCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHH
Q 017080 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLP-------SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD 160 (377)
Q Consensus 90 ~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~~-------~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~ 160 (377)
.++.+...+......+|.....-++..|..+- ...+||--|||.|+++- ...|..+.|.|.|--|+-...=
T Consensus 17 ~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 17 TLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred HHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence 34444444444444455555555555554332 24699999999999863 2558899999999998633221
Q ss_pred --------c---------------------------------------CCeEEEeeCCCCCCCC---CceeEEEeccchh
Q 017080 161 --------R---------------------------------------GHEVLVADAVNLPYRS---DFGDAAISIAVLH 190 (377)
Q Consensus 161 --------~---------------------------------------~~~~~~~d~~~~~~~~---~~fD~V~~~~~l~ 190 (377)
+ ++....+|+.+.-.++ ++||+|++.+.+.
T Consensus 97 iLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID 176 (270)
T PF07942_consen 97 ILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID 176 (270)
T ss_pred HHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee
Confidence 0 1234455555543233 7999999998777
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a 270 (377)
-.++ ....|+.+.++|||||..+=.-|.... + .+........-..+.+++.++.+..
T Consensus 177 TA~N---i~~Yi~tI~~lLkpgG~WIN~GPLlyh--------~------------~~~~~~~~~sveLs~eEi~~l~~~~ 233 (270)
T PF07942_consen 177 TAEN---IIEYIETIEHLLKPGGYWINFGPLLYH--------F------------EPMSIPNEMSVELSLEEIKELIEKL 233 (270)
T ss_pred chHH---HHHHHHHHHHHhccCCEEEecCCcccc--------C------------CCCCCCCCcccCCCHHHHHHHHHHC
Confidence 6666 899999999999999954333222110 0 0000001112456789999999999
Q ss_pred CCccc
Q 017080 271 SEEQG 275 (377)
Q Consensus 271 GF~~~ 275 (377)
||++.
T Consensus 234 GF~~~ 238 (270)
T PF07942_consen 234 GFEIE 238 (270)
T ss_pred CCEEE
Confidence 99883
No 178
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.29 E-value=1.6e-06 Score=86.41 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=67.6
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC----CCCCCceeEEEec
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL----PYRSDFGDAAISI 186 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~----~~~~~~fD~V~~~ 186 (377)
+.++.+|||+|||+|.++.. ....+|+|+|+|+.+++.|+++ +++++.+|+.+. +..+++||+|++.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 45668999999999997532 2345899999999999999876 578999998752 2335679999974
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-.=.-+ ...+++.+.+ ++|++.++++.
T Consensus 370 PPr~G~-----~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 370 PPRKGC-----AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred cCCCCC-----CHHHHHHHHh-cCCCEEEEEcC
Confidence 321111 1356666554 88998887764
No 179
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.27 E-value=2.4e-06 Score=79.23 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=56.2
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+++.+++.++++ ++.++.+|+..++++ .||.|+++-..+
T Consensus 26 ~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 26 EDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred CCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCCcc
Confidence 345788999999999998643 2356999999999999998875 578999999987754 489999876543
No 180
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.25 E-value=1.6e-06 Score=80.96 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=54.4
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc----CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR----GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.+.++.+|||||||+|.++.. ..+.+|+|+|+++.|++.++++ +++++.+|+..+++++-.+|.|+++-.
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 345778999999999997642 2234999999999999999875 688999999988764422577877643
No 181
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.24 E-value=2.6e-06 Score=78.01 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=76.6
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc----c-cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C-
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL----G-LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y- 175 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~----~-~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~- 175 (377)
+++..+....+..+|||||+++|.-+ . ..++.+++.+|+++...+.|++. .++++.+|+.+. + +
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence 44455555556789999999999842 2 24678999999999999998876 578889988662 2 1
Q ss_pred ----CCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 176 ----RSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 176 ----~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..++||+|+.-.- .......+..+.+.|+|||.+++-.
T Consensus 149 ~~~~~~~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred hccccCCcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 1368999998653 2226788888999999999977743
No 182
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.24 E-value=3.7e-06 Score=73.59 Aligned_cols=87 Identities=23% Similarity=0.159 Sum_probs=68.9
Q ss_pred EEEEECCccCcc----cccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 125 LVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 125 ~vLDiGcG~G~~----~~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
+++|||+|.|.- +-..|..+++.+|.+..-+...+.- |++++...+++ +....+||+|+++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcC---
Confidence 899999999982 3458999999999999765544432 68899999988 55578999999998653
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...++.-+...|++||.+++.-
T Consensus 127 ----l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 ----LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ----HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEc
Confidence 7789999999999999988874
No 183
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.22 E-value=2.5e-06 Score=82.80 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=82.1
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCC----
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNLP---- 174 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~---- 174 (377)
+.....+...-.|++|||+=|=||.++- ...|+ +|++||+|...+++|+++ .+.|+++|+..+-
T Consensus 206 R~~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 206 RDNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred HHHHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH
Confidence 3444455555459999999999999863 35677 999999999999999998 2579999997742
Q ss_pred CCCCceeEEEec---------cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 175 YRSDFGDAAISI---------AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 175 ~~~~~fD~V~~~---------~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
-...+||+|++- ....-..+ ...++..+.++|+|||.+++++-.
T Consensus 286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rd---y~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 286 RRGEKFDLIILDPPSFARSKKQEFSAQRD---YKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred hcCCcccEEEECCcccccCcccchhHHHH---HHHHHHHHHHHcCCCCEEEEEecC
Confidence 224589999982 22222233 778999999999999999998644
No 184
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.22 E-value=3e-06 Score=82.75 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=67.0
Q ss_pred CCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCC-CCCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPY-RSDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-~~~~fD~V~~~~~l~h 191 (377)
++.+|||+|||+|.++. ..++..|+|+|+++.+++.|+++ +++|+.+|+.++.. ..++||+|++.=--..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRG 312 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCC
Confidence 46799999999998753 24567999999999999999876 46789999876421 1246999988633221
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+ ...+++.+. .++|++.++++.
T Consensus 313 ~-----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 313 I-----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred C-----cHHHHHHHH-hcCCCeEEEEEe
Confidence 1 234555554 479999999986
No 185
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.21 E-value=3.4e-06 Score=83.82 Aligned_cols=92 Identities=14% Similarity=0.195 Sum_probs=64.4
Q ss_pred CCEEEEECCccCccccc--------CCCceEEEEeCCHHHHHHHHH----c----CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 123 GSLVLDAGCGNGKYLGL--------NPDCFFVGCDISPSLIKICVD----R----GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--------~~~~~v~gvD~s~~~~~~a~~----~----~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
+..|||||||+|.+... ....+|++|+-|+.+....+. + .|+++.+|++++..+. +.|+||+-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 56899999999997521 234599999999987755432 2 5899999999987644 89999995
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
.+- .+-+.|.....|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 543 33343446778999999999998754
No 186
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.20 E-value=4.6e-06 Score=72.89 Aligned_cols=102 Identities=26% Similarity=0.370 Sum_probs=68.8
Q ss_pred HHhCCCCCCEEEEECCccCccccc----CCCc---------eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLGL----NPDC---------FFVGCDISPSLIKICVDR--------GHEVLVADAVNLP 174 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~~----~~~~---------~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~ 174 (377)
.++...++..|||--||+|.++-+ .... .++|.|+++.+++.|+++ .+.+.+.|+..++
T Consensus 22 ~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 22 NLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp HHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred HHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 344567788999999999997521 2222 399999999999999987 2578899999999
Q ss_pred CCCCceeEEEeccchhh-cCCh----HHHHHHHHHHHHccccCcEEEEE
Q 017080 175 YRSDFGDAAISIAVLHH-LSTE----SRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 175 ~~~~~fD~V~~~~~l~h-~~~~----~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
+.++++|+|++.--..- +.+. +-...+++++.++|++ ..+++.
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 87899999999765543 2221 1145778999999999 333333
No 187
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.20 E-value=4.8e-07 Score=78.48 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCEEEEECCccCccccc-CCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHH
Q 017080 123 GSLVLDAGCGNGKYLGL-NPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~-~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~ 200 (377)
+.++||+|+|.|..+.. .|.. +|.+.++|..|....++++.+++. ..++.-.+-+||+|.|..++.-.-+ +-+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~--~~ew~~t~~k~dli~clNlLDRc~~---p~k 187 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLT--EIEWLQTDVKLDLILCLNLLDRCFD---PFK 187 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceee--ehhhhhcCceeehHHHHHHHHhhcC---hHH
Confidence 46999999999998754 5554 799999999999999888665543 3333333557999999999998877 889
Q ss_pred HHHHHHHcccc-CcEEEEEE
Q 017080 201 AIEELVRVVKK-GSLVLITV 219 (377)
Q Consensus 201 ~l~~~~r~Lkp-gG~l~i~~ 219 (377)
+|+.++.+|+| +|.++++-
T Consensus 188 LL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 188 LLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHHhccCCCcEEEEE
Confidence 99999999999 89888763
No 188
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.20 E-value=2.1e-06 Score=86.91 Aligned_cols=98 Identities=13% Similarity=0.224 Sum_probs=74.9
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCCCceeEEEeccc
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRSDFGDAAISIAV 188 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~~~fD~V~~~~~ 188 (377)
.+..+||||||.|.++ ..+|...++|+|++...+..+..+ |+.++..|+..+. ++++++|.|+.++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 3568999999999975 348999999999999877655443 5667777765432 67899999999876
Q ss_pred hhhcCChHH-----HHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
=-|...... -..+++.++++|||||.+.+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 555332110 2589999999999999999986
No 189
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.13 E-value=2.3e-05 Score=74.45 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=75.1
Q ss_pred hCCCCCCEEEEECCccCcc----cc----cCCCceEEEEeCCHHHHHHHHHc-------CCeE--EEeeCCCC----CC-
Q 017080 118 NSLPSGSLVLDAGCGNGKY----LG----LNPDCFFVGCDISPSLIKICVDR-------GHEV--LVADAVNL----PY- 175 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~----~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~--~~~d~~~~----~~- 175 (377)
..++++..|+|+|||+|.= +. ......++++|+|..+++.+.++ .+.+ +.+|..+. +-
T Consensus 72 ~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 72 ASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred HhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccc
Confidence 3567788999999999982 22 23457899999999999887765 2333 67777552 21
Q ss_pred -CCCceeEEEecc-chhhcCChHHHHHHHHHHHH-ccccCcEEEEEE
Q 017080 176 -RSDFGDAAISIA-VLHHLSTESRRKKAIEELVR-VVKKGSLVLITV 219 (377)
Q Consensus 176 -~~~~fD~V~~~~-~l~h~~~~~~~~~~l~~~~r-~LkpgG~l~i~~ 219 (377)
......+++..+ ++..++..+ ...+|+++++ .|+|||.++|..
T Consensus 152 ~~~~~~r~~~flGSsiGNf~~~e-a~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGNFSRPE-AAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cccCCccEEEEeCccccCCCHHH-HHHHHHHHHHhhCCCCCEEEEec
Confidence 123356666665 899998766 7899999999 999999999975
No 190
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=3.3e-06 Score=69.34 Aligned_cols=69 Identities=25% Similarity=0.387 Sum_probs=58.3
Q ss_pred CCCEEEEECCccCcccc--cCC-CceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYLG--LNP-DCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~-~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.|+.++|+|||.|.+.- ..+ .-.|+|+|+.|.+++++..+ ++.++++|+.++.+..+.||.++.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 57899999999999862 233 44899999999999999988 67889999999877779999999987665
No 191
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.10 E-value=1.6e-05 Score=72.06 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=68.8
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCC----C-CCCCCCceeEEE
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAV----N-LPYRSDFGDAAI 184 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~----~-~~~~~~~fD~V~ 184 (377)
.+..|||+|||+|..+ ...|.+.|+++|.|+.++..|.+| .+.++.-+++ . .+...+++|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 4558999999999964 336788999999999999999887 2444433333 2 235578999999
Q ss_pred eccchhhcCC-----------------------hHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 185 SIAVLHHLST-----------------------ESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 185 ~~~~l~h~~~-----------------------~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++=-.---.| .+-...++.-+.|.|+|||.+.+....
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 8532110000 000445667788999999999887653
No 192
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.10 E-value=1.2e-05 Score=74.29 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=51.9
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCCcee---EEEeccc
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSDFGD---AAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~~fD---~V~~~~~ 188 (377)
+.++.+|||||||+|.++.. .....|+++|+++.+++.++++ +++++.+|+..++++ .|| +|+++-.
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence 45678999999999998653 2335799999999999998875 578899999988764 466 6666543
No 193
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.04 E-value=7.7e-06 Score=77.05 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=56.2
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~ 188 (377)
.+.++.+|||||||+|.++.. ..+.+|+++|+++.+++.++++ +++++.+|+...++ ..||.|+++-.
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlP 110 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVP 110 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCC
Confidence 456788999999999998643 3456899999999999988864 47889999987654 36898887543
Q ss_pred hhhcCC
Q 017080 189 LHHLST 194 (377)
Q Consensus 189 l~h~~~ 194 (377)
.++..
T Consensus 111 -Y~Ist 115 (294)
T PTZ00338 111 -YQISS 115 (294)
T ss_pred -cccCc
Confidence 33444
No 194
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=1.9e-05 Score=69.61 Aligned_cols=102 Identities=22% Similarity=0.205 Sum_probs=73.8
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
-+.++.+|+|+|+-.|.|++. .++..|+|+|+.|.-+ -.++.++++|+..-+ +....+|+|++
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s 117 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS 117 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHHHHcCCCCcceEEe
Confidence 467899999999999999753 4556799999977432 125899999998743 33455799997
Q ss_pred ccch--------hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 186 IAVL--------HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 186 ~~~l--------~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
-..= +|......-..++.-+..+|+|||.+++-.+-...
T Consensus 118 D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 118 DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 4432 44443332456667777899999999999876543
No 195
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.02 E-value=2.5e-05 Score=68.86 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=64.0
Q ss_pred CCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-C-C-CCC-ceeEEEec
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL-P-Y-RSD-FGDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~-~~~-~fD~V~~~ 186 (377)
.+.+|||++||+|.+.-. ..++ .|+++|.++.+++.++++ +++++.+|+... . + ... .||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 578999999999997532 3444 899999999999988876 256788888542 2 2 122 47777774
Q ss_pred cchhhcCChHHHHHHHHHHH--HccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~--r~LkpgG~l~i~~~ 220 (377)
=-... .. ...++..+. .+|+++|.+++...
T Consensus 129 PPy~~-~~---~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN-GA---LQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC-Cc---HHHHHHHHHHCCCCCCCeEEEEEec
Confidence 33321 22 345555554 36889988777653
No 196
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=2e-06 Score=71.32 Aligned_cols=86 Identities=23% Similarity=0.329 Sum_probs=62.3
Q ss_pred EEEEECCccCcccccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC-CCCCCCCceeEEEeccchhhcCChHHHHHHHH
Q 017080 125 LVLDAGCGNGKYLGLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NLPYRSDFGDAAISIAVLHHLSTESRRKKAIE 203 (377)
Q Consensus 125 ~vLDiGcG~G~~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~ 203 (377)
-.+-||||.=.+ .|+...+-+.-.+. +. +++++. ..+|.+++.|+|.+.++++|+.-++ -..+++
T Consensus 5 ~kv~ig~G~~r~---npgWi~~d~ed~~~---------vd-lvc~As~e~~F~dns~d~iyaeHvlEHlt~~E-g~~alk 70 (185)
T COG4627 5 EKVKIGAGGKRV---NPGWIITDVEDRPE---------VD-LVCRASNESMFEDNSVDAIYAEHVLEHLTYDE-GTSALK 70 (185)
T ss_pred eEEEEecccccc---CCCceeeehhcccc---------cc-hhhhhhhhccCCCcchHHHHHHHHHHHHhHHH-HHHHHH
Confidence 367789998443 45655543332221 11 222333 3568899999999999999998766 789999
Q ss_pred HHHHccccCcEEEEEEcCCCc
Q 017080 204 ELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 204 ~~~r~LkpgG~l~i~~~~~~~ 224 (377)
+++|.|||||+|-|+.+....
T Consensus 71 echr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 71 ECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred HHHHHhCcCcEEEEEcCCcch
Confidence 999999999999999887643
No 197
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.99 E-value=2.2e-05 Score=73.26 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=71.4
Q ss_pred CEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCCceeEEEecc
Q 017080 124 SLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSDFGDAAISIA 187 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~~fD~V~~~~ 187 (377)
++||-||.|.|..++. .+-.+++.|||++..++.+++. +++++.+|...+ .-...+||+|++-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 6999999999998764 4456999999999999999986 356777777663 22234899999864
Q ss_pred chh-----hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLH-----HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~-----h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.=. .+-+ ..+++.+++.|+++|+++...
T Consensus 158 tdp~gp~~~Lft----~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDPVGPAEALFT----EEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCCCcccccCC----HHHHHHHHHhcCCCcEEEEec
Confidence 322 1112 689999999999999998883
No 198
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.98 E-value=3.9e-05 Score=76.68 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=74.3
Q ss_pred CCCCCCEEEEECCccCcc----ccc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKY----LGL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~----~~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~~fD~V~~ 185 (377)
...+|.+|||+++|.|.= +.. .....++++|+++.-++..+++ ++.+...|...+. ...+.||.|++
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 456889999999999983 222 3456999999999998888776 3455666766543 23467999994
Q ss_pred ----cc--chhhcCCh-------------HHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 186 ----IA--VLHHLSTE-------------SRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 186 ----~~--~l~h~~~~-------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
++ ++..-++. ..-.++|..+.+.|||||.|+.++-+...
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 42 33322210 00268899999999999999888766543
No 199
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.97 E-value=2.9e-05 Score=72.52 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=69.0
Q ss_pred CCCEEEEECCccCccc----ccCC-CceEEEEeCCHHHHHHHHHc--CC---eE--EEeeCCCCCCCCCceeEEEeccch
Q 017080 122 SGSLVLDAGCGNGKYL----GLNP-DCFFVGCDISPSLIKICVDR--GH---EV--LVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~-~~~v~gvD~s~~~~~~a~~~--~~---~~--~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
.+.+|||+|||+|..+ ...+ -.+++++|.|+.|++.++.- .. .. ...+...-..+-...|+|++.++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 3469999999999842 2233 34899999999999988765 10 00 000111000111233999999999
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCcc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 225 (377)
..+++ +....+++.+.+.+.+ .|+|.++.....
T Consensus 113 ~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 113 NELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred hcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 99999 5588999999888876 888888765543
No 200
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.96 E-value=6.8e-06 Score=76.69 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=73.7
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCC-C--C
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR---------GHEVLVADAVNL-P--Y 175 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~-~--~ 175 (377)
+....++.....+.+|||+=|=||.++- ...|+ +|+.||.|..++++++++ .++|+..|+.+. . -
T Consensus 112 R~nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 112 RENRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp HHHHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred HhhHHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence 3344444444578999999999999863 34555 899999999999999987 357888888763 1 1
Q ss_pred CCCceeEEEec------cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 176 RSDFGDAAISI------AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 176 ~~~~fD~V~~~------~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..++||+||+- ....- ..+...++..+.++|+|||.++++.-+
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~---~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDL---ERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEH---HHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred cCCCCCEEEECCCCCCCCHHHH---HHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 24689999982 11111 122678999999999999998877543
No 201
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.94 E-value=1.9e-05 Score=69.97 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=63.5
Q ss_pred HHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAA 183 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V 183 (377)
....+.++..|||+.||-|.|+- ..+...|+++|++|..++..+++ .+..+.+|+..+.. .+.||-|
T Consensus 95 i~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 95 IANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp HHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEE
T ss_pred HHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEE
Confidence 33446789999999999999852 25677999999999999888876 36778999988754 7899999
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
++...- . -..+|..+.+.+++||++-
T Consensus 174 im~lp~----~---~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPE----S---SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TS----S---GGGGHHHHHHHEEEEEEEE
T ss_pred EECChH----H---HHHHHHHHHHHhcCCcEEE
Confidence 886421 1 2467888999999998763
No 202
>PRK00536 speE spermidine synthase; Provisional
Probab=97.94 E-value=4e-05 Score=70.68 Aligned_cols=87 Identities=9% Similarity=-0.006 Sum_probs=66.3
Q ss_pred CCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
+.+++||=||+|.|..++. ++. +|+-||+++.+++.+++. +++++. .+.+ ...++||+|++-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCEEEEc
Confidence 4568999999999998764 554 999999999999999984 233333 1111 124789999987
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. . ...+.+.+++.|+|||.++...
T Consensus 147 s~----~----~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----P----DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----C----ChHHHHHHHHhcCCCcEEEECC
Confidence 43 2 3578899999999999998864
No 203
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.93 E-value=3.4e-05 Score=75.64 Aligned_cols=132 Identities=16% Similarity=0.196 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhCcccccccccchHHHHHHH-hCCCCCC-EEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHcC
Q 017080 88 KKYVHRVYDAIAPHFSSTRFAKWPKVATFL-NSLPSGS-LVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDRG 162 (377)
Q Consensus 88 ~~~~~~~y~~~a~~y~~~~~~~~~~~~~~l-~~~~~~~-~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~ 162 (377)
..||+..|.... .-.-.++..+..+...+ ..+.+-. ++|-+|||+-.+... .....|+.+|+|+..++....++
T Consensus 13 ~~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~ 91 (482)
T KOG2352|consen 13 VVYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRN 91 (482)
T ss_pred chhhhhhccccC-CChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcc
Confidence 456666654443 11112344444433333 2344555 999999999987642 33348999999999998877663
Q ss_pred ------CeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH-------HHHHHHHHHHccccCcEEEEEEc
Q 017080 163 ------HEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR-------RKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 163 ------~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~-------~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..+...|+..+.|++++||+|+..+.++++-.+++ ....+.+++|+|+|||+.+....
T Consensus 92 ~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 92 AKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 67889999999999999999999999999754332 34678999999999999887765
No 204
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=7.7e-05 Score=63.79 Aligned_cols=98 Identities=15% Similarity=0.303 Sum_probs=65.6
Q ss_pred CCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHH----HHHc--CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 123 GSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKI----CVDR--GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~----a~~~--~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
..-+||||||+|..+. ..+...+.++|++|.+++. |+.+ ++..++.|+..- +..++.|+++.+--.--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 5689999999998542 3688899999999999866 4444 356677777652 23478888776432111
Q ss_pred cCChH------------------HHHHHHHHHHHccccCcEEEEEEcC
Q 017080 192 LSTES------------------RRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 192 ~~~~~------------------~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
-++.+ -..+++..+-..|.|.|++++....
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 11100 0345666677788899999887643
No 205
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.87 E-value=4.5e-05 Score=74.53 Aligned_cols=89 Identities=21% Similarity=0.149 Sum_probs=68.0
Q ss_pred CCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 123 GSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
+.+|||++||+|.++-. .+...|+++|+++.+++.++++ ++.+..+|+..+....+.||+|++.= .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999997532 3334899999999999999876 24578888866421146799999853 2
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.. +..++....+.+++||+++++
T Consensus 135 -Gs---~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GS---PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CC---cHHHHHHHHHHhcCCCEEEEE
Confidence 23 457888878889999999998
No 206
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.85 E-value=5.1e-05 Score=72.12 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=49.2
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc---C------CeEEE-eeCCCCC----CCCCceeEE
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR---G------HEVLV-ADAVNLP----YRSDFGDAA 183 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~---~------~~~~~-~d~~~~~----~~~~~fD~V 183 (377)
++.+|||||||+|... ...++++++|+|+++.+++.|+.+ + +.+.. .|...+. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999998542 346688999999999999999976 2 23332 2332221 246789999
Q ss_pred Eeccchh
Q 017080 184 ISIAVLH 190 (377)
Q Consensus 184 ~~~~~l~ 190 (377)
+|+=-++
T Consensus 194 vcNPPf~ 200 (321)
T PRK11727 194 LCNPPFH 200 (321)
T ss_pred EeCCCCc
Confidence 9986654
No 207
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.82 E-value=4.7e-06 Score=72.90 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=59.1
Q ss_pred CCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------C--CC--CCceeEEEec
Q 017080 122 SGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------P--YR--SDFGDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~------~--~~--~~~fD~V~~~ 186 (377)
++.+|||+||++|.|+.. .+...|+|+|+.+... ..++.++.+|+.+. . +. .+.||+|+|-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 348999999999998753 2458999999988611 12344445554331 1 11 2689999998
Q ss_pred cchhhc--------CChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 187 AVLHHL--------STESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 187 ~~l~h~--------~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
...... ...+.....+.-+...|+|||.+++-.+...
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 732211 1111134556666678999999999877643
No 208
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.78 E-value=3.1e-05 Score=71.15 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=69.5
Q ss_pred CCCCEEEEECCccCccccc---CC-CceEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC-CCCCC-ceeEE
Q 017080 121 PSGSLVLDAGCGNGKYLGL---NP-DCFFVGCDISPSLIKICVDR-----------GHEVLVADAVNL-PYRSD-FGDAA 183 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~---~~-~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~-~~~~~-~fD~V 183 (377)
+.+.+||=||.|.|..++. ++ ..+++.||+++..++.|++. +++++.+|+..+ .-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3578999999999987642 33 56999999999999999874 467888888653 22234 89999
Q ss_pred EeccchhhcCChH-HHHHHHHHHHHccccCcEEEEEEc
Q 017080 184 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 184 ~~~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+.-..-...+... --..+++.+.+.|+|||++++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 9843321111100 015899999999999999998763
No 209
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.77 E-value=8.4e-05 Score=70.03 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=73.7
Q ss_pred CCCCCEEEEECCccCccccc---CCC-ceEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCCCC-CCCCce
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPD-CFFVGCDISPSLIKICVDR--------------GHEVLVADAVNLP-YRSDFG 180 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~-~~v~gvD~s~~~~~~a~~~--------------~~~~~~~d~~~~~-~~~~~f 180 (377)
++...+||-+|.|.|.-+++ +|+ .+++-+|++|.|++.++.+ +++++..|+.++- -..+.|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 34557999999999997753 784 4999999999999999854 3678888887752 335689
Q ss_pred eEEEecc------chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 181 DAAISIA------VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 181 D~V~~~~------~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|.||.-. ++.-+-+ ..+..-+.|.|+++|.+++.--
T Consensus 367 D~vIVDl~DP~tps~~rlYS----~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYS----VEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEEeCCCCCCcchhhhhh----HHHHHHHHHhcCcCceEEEecC
Confidence 9998742 2222222 5788889999999999998753
No 210
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.75 E-value=7.4e-05 Score=69.60 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=68.6
Q ss_pred CCCEEEEECCccCccc---ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGNGKYL---GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~---~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
.++.|||+|||.|.+. ......+|++++. .+|.+.|++. ++.++.+-+++..+| ++.|+||+--+-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 5789999999999964 3344459999996 5677888764 467788888887764 4579999865444
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
-+-+ ++..+..-..++.|||.|.++=.
T Consensus 255 mL~N-ERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 255 MLVN-ERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhh-HHHHHHHHHHHhhcCCCCcccCc
Confidence 4444 44556666778999999987654
No 211
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.74 E-value=0.0001 Score=70.12 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=68.9
Q ss_pred hCCCCCCEEEEECCccCccccc-----------CCCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCC-
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL-----------NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYR- 176 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~-----------~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~- 176 (377)
....++.+|||-+||+|.++.. .....++|+|+++.++..|+-+ ...+..+|....+..
T Consensus 42 ~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 42 LNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp HTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT
T ss_pred hhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc
Confidence 3456677999999999998532 2677999999999999888754 235777787654432
Q ss_pred -CCceeEEEeccchhhc--C----------------ChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 177 -SDFGDAAISIAVLHHL--S----------------TESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 177 -~~~fD~V~~~~~l~h~--~----------------~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
...||+|+++=.+.-. . ....-..++..+.+.|++||++.+..+.
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 4789999996433322 0 0011236889999999999998888754
No 212
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.00021 Score=63.73 Aligned_cols=90 Identities=21% Similarity=0.098 Sum_probs=68.0
Q ss_pred CCEEEEECCccCcc----cccCCCceEEEEeCCHHHHHHHH---Hc----CCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 123 GSLVLDAGCGNGKY----LGLNPDCFFVGCDISPSLIKICV---DR----GHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 123 ~~~vLDiGcG~G~~----~~~~~~~~v~gvD~s~~~~~~a~---~~----~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
+.+++|||+|.|.- +-..|+.+|+-+|....-+..-+ .. |++++.+.++++.-....||+|+++.+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 58999999999982 33588889999999886554433 33 68899999998753212299999987643
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...++.-+...+|+||.+++.-
T Consensus 147 ------L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 147 ------LNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ------hHHHHHHHHHhcccCCcchhhh
Confidence 6677888889999999876543
No 213
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.73 E-value=6.3e-05 Score=71.21 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=65.6
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
+.+|.++|||||++|.|+.. ..++.|++||.++-........+|..+..|...+..+.+.+|.++|-.+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~------- 281 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK------- 281 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC-------
Confidence 46889999999999999853 567799999977644444444468888888766543367899999987643
Q ss_pred HHHHHHHHHHccccC
Q 017080 198 RKKAIEELVRVVKKG 212 (377)
Q Consensus 198 ~~~~l~~~~r~Lkpg 212 (377)
|.++.+-+.+.|..|
T Consensus 282 P~rva~lm~~Wl~~g 296 (357)
T PRK11760 282 PARVAELMAQWLVNG 296 (357)
T ss_pred HHHHHHHHHHHHhcC
Confidence 778888888888766
No 214
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00017 Score=63.30 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=75.3
Q ss_pred CCCCEEEEECCccCccc---ccCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCC-C-CCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGNGKYL---GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN-L-PYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~---~~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~-~-~~~~~~fD~V~~~~~l 189 (377)
.+|.|||.||-|-|... +..+-.+-+-++..|..++..+.. ++..+.+--++ + .++++.||-|+--.--
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 57889999999999854 446666778899999999988876 56566555444 2 2679999999886655
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|..+ ...+.+.+.|+|||+|++-+..
T Consensus 180 e~yEd---l~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELYED---LRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHHHH---HHHHHHHHhhhcCCCceEEEec
Confidence 76666 8899999999999999876654
No 215
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.72 E-value=0.00045 Score=61.52 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=75.3
Q ss_pred HHHHHhCCCCCCEEEEECCccCccc-----ccCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-C-----
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGKYL-----GLNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVN-L----- 173 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~~~-----~~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~-~----- 173 (377)
+...+..+-.++++||||.=||.-+ ..-++.+|+++|+++...+++.+. .++++++++.+ +
T Consensus 64 fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~ 143 (237)
T KOG1663|consen 64 FLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA 143 (237)
T ss_pred HHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh
Confidence 3333334556789999999999832 235678999999999998888654 47888888765 2
Q ss_pred CCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 174 PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 174 ~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
....++||+++.- |..+. ....+.++.+++|+||+|++-.
T Consensus 144 ~~~~~tfDfaFvD----adK~n--Y~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 144 DGESGTFDFAFVD----ADKDN--YSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred cCCCCceeEEEEc----cchHH--HHHHHHHHHhhcccccEEEEec
Confidence 1346899999874 44443 4588999999999999988864
No 216
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.72 E-value=0.00021 Score=65.61 Aligned_cols=137 Identities=20% Similarity=0.184 Sum_probs=80.5
Q ss_pred CEEEEECCccCcc------c-ccCCCceEEEEeCCHHHHHHHHHc-----C--CeEEEeeCCCCC--CC----CCcee--
Q 017080 124 SLVLDAGCGNGKY------L-GLNPDCFFVGCDISPSLIKICVDR-----G--HEVLVADAVNLP--YR----SDFGD-- 181 (377)
Q Consensus 124 ~~vLDiGcG~G~~------~-~~~~~~~v~gvD~s~~~~~~a~~~-----~--~~~~~~d~~~~~--~~----~~~fD-- 181 (377)
...||||||--.- + +..|+++|+-+|..|..+..++.. + ..++.+|+.+.. +. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 6899999996431 1 138999999999999999888765 3 568999998731 11 12233
Q ss_pred ---EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCC
Q 017080 182 ---AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSAR 258 (377)
Q Consensus 182 ---~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 258 (377)
.+++..++||++|++++..+++.++..|.||.+|.|+..+.+...... ......+.. ........
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~---------~~~~~~~~~---~~~~~~~R 217 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERA---------EALEAVYAQ---AGSPGRPR 217 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHH---------HHHHHHHHH---CCS----B
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHH---------HHHHHHHHc---CCCCceec
Confidence 678889999999977799999999999999999999987654221110 111111111 12234566
Q ss_pred CcccHHhHhhcCCCcc
Q 017080 259 TLESIPETEDNGSEEQ 274 (377)
Q Consensus 259 ~~~~l~~~l~~aGF~~ 274 (377)
+.+++.+++. ||+.
T Consensus 218 s~~ei~~~f~--g~el 231 (267)
T PF04672_consen 218 SREEIAAFFD--GLEL 231 (267)
T ss_dssp -HHHHHHCCT--TSEE
T ss_pred CHHHHHHHcC--CCcc
Confidence 7788888887 8855
No 217
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=7e-05 Score=64.29 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=69.4
Q ss_pred CCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEe-eCCCC--------CCCCCceeEEE
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNL--------PYRSDFGDAAI 184 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-d~~~~--------~~~~~~fD~V~ 184 (377)
-+.|+.+|||+||..|.|++. .|...|.|||+-. .....|+.++.+ |+.+. .++....|+|+
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVl 141 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVL 141 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEE
Confidence 467899999999999999752 6899999999833 333446666666 66552 24577899999
Q ss_pred eccc--------hhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 185 SIAV--------LHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 185 ~~~~--------l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
+-+. ..|...-+.-..++.-....++|+|.+++-.|....
T Consensus 142 SDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 142 SDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred eccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 8543 222222111223444455677899999999998653
No 218
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.52 E-value=0.0007 Score=60.24 Aligned_cols=97 Identities=21% Similarity=0.334 Sum_probs=69.9
Q ss_pred CCCCCCEEEEECCccCccc----cc-CCCceEEEEeCCH----HHHHHHHHc-CCeEEEeeCCCCC-C--CCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GL-NPDCFFVGCDISP----SLIKICVDR-GHEVLVADAVNLP-Y--RSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~-~~~~~v~gvD~s~----~~~~~a~~~-~~~~~~~d~~~~~-~--~~~~fD~V~~ 185 (377)
.+.+|.+||-+|..+|... .. .+...|++|+.|+ ..+..|+++ |+--+..|+.... + --+..|+|++
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 4678999999999999854 22 6788999999999 456777777 6777888987632 1 1258999998
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
--. .+++.+-++.++...||+||.+++..-
T Consensus 150 DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 150 DVA-----QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp E-S-----STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC-----ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 533 223367888999999999999999863
No 219
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.51 E-value=0.00019 Score=69.63 Aligned_cols=88 Identities=9% Similarity=0.072 Sum_probs=59.2
Q ss_pred CEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC----------C------C
Q 017080 124 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR----------S------D 178 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~----------~------~ 178 (377)
.+|||++||+|.++-. .....|+|+|+|+.+++.++++ +++++.+|+.++.-. . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 4799999999997532 1124899999999999999986 467899998763210 1 1
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.||+|+.-=- . -.- ...+++.+. +|++.++++.
T Consensus 279 ~~d~v~lDPP-R-~G~---~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 279 NCSTIFVDPP-R-AGL---DPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred CCCEEEECCC-C-CCC---cHHHHHHHH---cCCcEEEEEc
Confidence 3798887322 0 000 134445444 4788888886
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.50 E-value=0.00013 Score=64.92 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=61.9
Q ss_pred ccccccccchHHHHHHHhCCCCCCEEEEECCccCccc---ccCCCc-eEEEEeCCHHHHHHHHHc---------------
Q 017080 101 HFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL---GLNPDC-FFVGCDISPSLIKICVDR--------------- 161 (377)
Q Consensus 101 ~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~---~~~~~~-~v~gvD~s~~~~~~a~~~--------------- 161 (377)
.|.+..+....++.+.+ .+.++...+|||||.|... ....++ ..+||++.+...+.|...
T Consensus 22 ~YGEi~~~~~~~il~~~-~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~ 100 (205)
T PF08123_consen 22 TYGEISPEFVSKILDEL-NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRP 100 (205)
T ss_dssp CGGGCHHHHHHHHHHHT-T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB--
T ss_pred ceeecCHHHHHHHHHHh-CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34333333344444433 4678899999999999963 223344 599999999987766542
Q ss_pred -CCeEEEeeCCCCCCCC---CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 162 -GHEVLVADAVNLPYRS---DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 162 -~~~~~~~d~~~~~~~~---~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
.+.+..+|+.+.++.. ..-|+|+++..+- +++ ....|.++...||||-+++
T Consensus 101 ~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F---~~~-l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 101 GKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF---DPD-LNLALAELLLELKPGARII 155 (205)
T ss_dssp -EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT----HH-HHHHHHHHHTTS-TT-EEE
T ss_pred ccceeeccCccccHhHhhhhcCCCEEEEecccc---CHH-HHHHHHHHHhcCCCCCEEE
Confidence 2456677766533111 3459999988653 222 6677788888899886654
No 221
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.46 E-value=0.0002 Score=69.71 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=60.8
Q ss_pred CCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-C-CC--------------C
Q 017080 123 GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P-YR--------------S 177 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~-~-~~--------------~ 177 (377)
+.+|||++||+|.++.. ....+|+|+|+|+.+++.++++ +++++.+|+.++ + +. .
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 35799999999997532 2234899999999999999876 467899998763 1 10 1
Q ss_pred CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+||+|+.-=-=.-+ ...+++.+.+ |++.++++.
T Consensus 287 ~~~D~v~lDPPR~G~-----~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 287 YNFSTIFVDPPRAGL-----DDETLKLVQA---YERILYISC 320 (362)
T ss_pred CCCCEEEECCCCCCC-----cHHHHHHHHc---cCCEEEEEe
Confidence 258999884221001 2345555544 788888886
No 222
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.45 E-value=8.7e-05 Score=65.03 Aligned_cols=98 Identities=20% Similarity=0.157 Sum_probs=66.1
Q ss_pred CCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC-CC---CCCCceeEEEe
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVN-LP---YRSDFGDAAIS 185 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~-~~---~~~~~fD~V~~ 185 (377)
-+|.++||+-||+|.+.- ...|+ .|+.||.++..+...+++ .+.++..|+.. ++ ....+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 368899999999999753 34554 999999999999998887 25677777644 21 24689999998
Q ss_pred ccchhhcCChHHHHHHHHHHH--HccccCcEEEEEEcC
Q 017080 186 IAVLHHLSTESRRKKAIEELV--RVVKKGSLVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~--r~LkpgG~l~i~~~~ 221 (377)
-=-... .. . ...++..+. .+|+++|.+++....
T Consensus 121 DPPY~~-~~-~-~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 DPPYAK-GL-Y-YEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp --STTS-CH-H-HHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCCccc-ch-H-HHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 533221 11 0 256777776 789999999887644
No 223
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00083 Score=64.09 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=79.2
Q ss_pred HHhCCCCCCEEEEECCccCccccc---CCCceEEEEeCCHHHHHHHHHc-------C-CeEEEeeCCCCCCCCCceeEEE
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLGL---NPDCFFVGCDISPSLIKICVDR-------G-HEVLVADAVNLPYRSDFGDAAI 184 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-------~-~~~~~~d~~~~~~~~~~fD~V~ 184 (377)
......+|.+|||+=+|-|.|+-- +....|+++|++|.+++..+++ + +..+.+|+.......+.+|-|+
T Consensus 182 va~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred HHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEE
Confidence 334456799999999999998632 3333499999999999998887 2 6789999998765558899999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+...- + -..++....+.+++||.+-+.....+
T Consensus 262 m~~p~----~---a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 262 MGLPK----S---AHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred eCCCC----c---chhhHHHHHHHhhcCcEEEEEeccch
Confidence 97533 3 45788888899999999999887654
No 224
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.0017 Score=62.98 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=77.1
Q ss_pred HHHHHhCCCCCCEEEEECCccCc----cccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC--CCC
Q 017080 113 VATFLNSLPSGSLVLDAGCGNGK----YLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--YRS 177 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG~G~----~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--~~~ 177 (377)
+...+....+|.+|||+.++.|. ++.. ..+..|+++|.|+.-++..+.+ ++.....|...++ .+.
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccc
Confidence 33444566789999999999987 2233 3456789999999988777776 3456777776543 222
Q ss_pred -CceeEEEe------ccchhhcCC------hH-------HHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 178 -DFGDAAIS------IAVLHHLST------ES-------RRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 178 -~~fD~V~~------~~~l~h~~~------~~-------~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
++||.|++ .+++.-=|+ .+ ...++|....+.|||||.|+.++-+...
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 35999987 334421121 11 1357899999999999999999766543
No 225
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00039 Score=63.78 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=58.3
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCCC-ceeEEEeccchhh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRSD-FGDAAISIAVLHH 191 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~~-~fD~V~~~~~l~h 191 (377)
+.++..|||||+|.|.++.. ..+..|+++++++.+++..++. +++++.+|+...+++.- .++.|+++-- ++
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP-Y~ 106 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLP-YN 106 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcCC-Cc
Confidence 45588999999999999864 5667899999999999888876 58899999999877653 5677777543 33
Q ss_pred cCC
Q 017080 192 LST 194 (377)
Q Consensus 192 ~~~ 194 (377)
+..
T Consensus 107 Iss 109 (259)
T COG0030 107 ISS 109 (259)
T ss_pred ccH
Confidence 544
No 226
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.34 E-value=0.00038 Score=63.32 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=55.7
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
.++++..|||||.|||.++.. ..+..|+++++++.|+....++ .++++.+|+...++ -.||.++++-
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--P~fd~cVsNl 131 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--PRFDGCVSNL 131 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--cccceeeccC
Confidence 467889999999999998754 6788999999999999888876 36789999987653 4689998853
No 227
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.29 E-value=0.0015 Score=69.09 Aligned_cols=78 Identities=23% Similarity=0.201 Sum_probs=54.7
Q ss_pred eEEEEeCCHHHHHHHHHc----C----CeEEEeeCCCCCCC--CCceeEEEeccchhh-cCChHHHHHHHHHHHHccc--
Q 017080 144 FFVGCDISPSLIKICVDR----G----HEVLVADAVNLPYR--SDFGDAAISIAVLHH-LSTESRRKKAIEELVRVVK-- 210 (377)
Q Consensus 144 ~v~gvD~s~~~~~~a~~~----~----~~~~~~d~~~~~~~--~~~fD~V~~~~~l~h-~~~~~~~~~~l~~~~r~Lk-- 210 (377)
.++|+|+++.+++.|+.+ + +.+.++|+.+++.+ .++||+|+++=-... +.+..+...+.+++.+.+|
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 699999999999999988 2 57889999887643 357999999854432 3332224455555555544
Q ss_pred -cCcEEEEEEcC
Q 017080 211 -KGSLVLITVWA 221 (377)
Q Consensus 211 -pgG~l~i~~~~ 221 (377)
||+.+++.+..
T Consensus 338 ~~g~~~~llt~~ 349 (702)
T PRK11783 338 FGGWNAALFSSS 349 (702)
T ss_pred CCCCeEEEEeCC
Confidence 89888777643
No 228
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.27 E-value=0.00035 Score=65.67 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=56.1
Q ss_pred hHHHHHHHhCCCCCCEEEEECCccCcccc----cC-CCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC--CCC
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP--YRS 177 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~-~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~--~~~ 177 (377)
..++++.+. +.++..+||.+||.|..+. .. +...|+|+|.++.+++.++++ ++.++.+|+.++. .++
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 345555554 3567899999999999653 23 368999999999999999875 4777888877643 112
Q ss_pred C--ceeEEEecc
Q 017080 178 D--FGDAAISIA 187 (377)
Q Consensus 178 ~--~fD~V~~~~ 187 (377)
+ ++|.|++..
T Consensus 87 ~~~~vDgIl~DL 98 (296)
T PRK00050 87 GLGKVDGILLDL 98 (296)
T ss_pred CCCccCEEEECC
Confidence 2 688887754
No 229
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.16 E-value=0.001 Score=64.73 Aligned_cols=90 Identities=19% Similarity=0.116 Sum_probs=68.8
Q ss_pred CCEEEEECCccCcccc----cCCC-ceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-CCCCceeEEEeccch
Q 017080 123 GSLVLDAGCGNGKYLG----LNPD-CFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-YRSDFGDAAISIAVL 189 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~----~~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~~fD~V~~~~~l 189 (377)
+.+|||+.||+|...- ..++ ..|+++|+++.+++.++++ ++.+...|+..+- ...+.||+|..-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 3589999999999752 2234 4899999999999999887 2567778877642 2236799998843 3
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. +..++..+.+.+++||.+.++.
T Consensus 124 ---Gs---~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GT---PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CC---cHHHHHHHHHhcccCCEEEEEe
Confidence 23 4579999999999999999983
No 230
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.10 E-value=0.0017 Score=60.18 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCEEEEECCccCccc-----cc-CCCceEEEEeCCHHHHHHHHHc---------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 123 GSLVLDAGCGNGKYL-----GL-NPDCFFVGCDISPSLIKICVDR---------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~-----~~-~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
+.+|+=||||.==++ .. .++..|+++|+++.+.+.+++- ++.|+.+|+.+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 369999999974432 22 4678999999999999888653 57899999987665457899999877
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...--..+ ..++|.++.+.++||..+++-.
T Consensus 201 lVg~~~e~--K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEP--KEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----S--HHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcccccch--HHHHHHHHHhhCCCCcEEEEec
Confidence 66532222 6899999999999999888863
No 231
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.06 E-value=0.00053 Score=58.99 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=70.9
Q ss_pred CEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 124 SLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
..+.|+|+|+|.++-. ...-+|++++.+|...+.|.++ +++++++|+.+..| ...|+|+|-..=..+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhhc
Confidence 5899999999997632 3345999999999999999988 68889999998877 45699998654333434
Q ss_pred hHHHHHHHHHHHHccccCcEEEE
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
++ ...+++.+...||-++.++=
T Consensus 112 E~-qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 112 EK-QVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cc-ccHHHHHHHHHhhcCCcccc
Confidence 33 56788888888888887654
No 232
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.0036 Score=54.49 Aligned_cols=98 Identities=20% Similarity=0.104 Sum_probs=69.3
Q ss_pred CCCCEEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC-CCCCC--ceeEEEec
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR--------GHEVLVADAVNL-PYRSD--FGDAAISI 186 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~-~~~~~--~fD~V~~~ 186 (377)
-.|.++||+=+|+|.+.- ...++ .++.||.+.......+++ +..++..|+... +-... +||+|+.-
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 368899999999999753 35555 999999999999999887 466778888742 21222 49999996
Q ss_pred cchhh-cCChHHHHHHHHH--HHHccccCcEEEEEEcC
Q 017080 187 AVLHH-LSTESRRKKAIEE--LVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h-~~~~~~~~~~l~~--~~r~LkpgG~l~i~~~~ 221 (377)
=-.+. +.+ ....+.. -..+|+|+|.+++....
T Consensus 122 PPy~~~l~~---~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 122 PPYAKGLLD---KELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCccchhh---HHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 55541 211 2333333 45779999999987543
No 233
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.04 E-value=0.0017 Score=54.28 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=59.5
Q ss_pred CCCCEEEEECCccCcccc---c-----CCCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCCCCCCCCceeE
Q 017080 121 PSGSLVLDAGCGNGKYLG---L-----NPDCFFVGCDISPSLIKICVDR----------GHEVLVADAVNLPYRSDFGDA 182 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~---~-----~~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~ 182 (377)
.+..+|+|+|||.|.++. . .++.+|+|+|.++..++.+..+ ++.+..++....+ .....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCeE
Confidence 567899999999999643 2 4788999999999998887765 2333444333321 2456688
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
++..++..-+.+ .+|+...+ |+-..++.
T Consensus 103 ~vgLHaCG~Ls~-----~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 103 LVGLHACGDLSD-----RALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEeecccchHH-----HHHHHHHH---cCCCEEEE
Confidence 888776665554 56666555 55444443
No 234
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.03 E-value=0.0036 Score=54.32 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=80.9
Q ss_pred hCCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHH----------HHHHHHHc---CCeEEEeeCCCCCCCCCc
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPS----------LIKICVDR---GHEVLVADAVNLPYRSDF 179 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~----------~~~~a~~~---~~~~~~~d~~~~~~~~~~ 179 (377)
..+++|++|+|+=-|.|.|++. .|...|+++=+.+. +-..+++. |++.+-.+...+. +.+.
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCc
Confidence 3578999999999999998764 45557777655443 12222222 4444444444444 3444
Q ss_pred eeEEEeccchhhcCC----hHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCC
Q 017080 180 GDAAISIAVLHHLST----ESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSP 255 (377)
Q Consensus 180 fD~V~~~~~l~h~~~----~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 255 (377)
.|+++....-|-+.. .....++.+.+++.|||||.+++.+........ .......
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~---------------------~~dt~~~ 181 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG---------------------LSDTITL 181 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC---------------------hhhhhhh
Confidence 566655332221110 111678999999999999999998744321100 0011123
Q ss_pred CCCCcccHHhHhhcCCCcc
Q 017080 256 SARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 256 ~~~~~~~l~~~l~~aGF~~ 274 (377)
+..+.....+..+.+||+-
T Consensus 182 ~ri~~a~V~a~veaaGFkl 200 (238)
T COG4798 182 HRIDPAVVIAEVEAAGFKL 200 (238)
T ss_pred cccChHHHHHHHHhhccee
Confidence 4456677889999999955
No 235
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0084 Score=54.76 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=75.3
Q ss_pred HHhCCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCC--CCce
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYR--SDFG 180 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~--~~~f 180 (377)
.+..+.||.+|||-|+|.|.++- ..|-.+++-+|.-....+.|.+. ++.+..-|+....|. +..+
T Consensus 99 ~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~a 178 (314)
T KOG2915|consen 99 SMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKA 178 (314)
T ss_pred HHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccccc
Confidence 33457899999999999999752 37888999999988777777664 688899999886543 5678
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcE-EEEEEcCC
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSL-VLITVWAV 222 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~-l~i~~~~~ 222 (377)
|.|+.- ++. |-.++-.++.+||.+|. +.-..+..
T Consensus 179 DaVFLD-----lPa---Pw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 179 DAVFLD-----LPA---PWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ceEEEc-----CCC---hhhhhhhhHHHhhhcCceEEeccHHH
Confidence 998874 666 67788888889998874 44434443
No 236
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0082 Score=52.51 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=72.0
Q ss_pred CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHH----HHHHHHc-CCeEEEeeCCCCC---CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSL----IKICVDR-GHEVLVADAVNLP---YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~----~~~a~~~-~~~~~~~d~~~~~---~~~~~fD~V~~~ 186 (377)
++.+|.+||=+|..+|... ...+...+++|+.|+.. +..|.++ |+--+..|+.... .-=+..|+|+.-
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe
Confidence 4678999999999999854 33557799999999965 4666666 6777888887632 112568988874
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+..+++..-+..++...||+||.++++.-
T Consensus 153 -----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 153 -----VAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred -----cCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 33344467888999999999998888753
No 237
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.95 E-value=0.00068 Score=66.98 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=67.8
Q ss_pred CEEEEECCccCcccccCCC--c---eEEEEeCCHHHHHHHHHcCCe-EEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 124 SLVLDAGCGNGKYLGLNPD--C---FFVGCDISPSLIKICVDRGHE-VLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~~~~~--~---~v~gvD~s~~~~~~a~~~~~~-~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
..|+|+.+|.|.|++.... . .|+-+ ..+..+...-++|+- .+..=.+.++..+.+||+|++.+++.+..+.-+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~ 445 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCE 445 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhccccc
Confidence 5899999999999865222 2 23333 233344444445422 222223446777899999999999998877666
Q ss_pred HHHHHHHHHHccccCcEEEEEE
Q 017080 198 RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...+|-|+-|+|+|||.++|.+
T Consensus 446 ~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 446 MEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred HHHHHHHhHhhcCCCceEEEec
Confidence 8999999999999999999975
No 238
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.0041 Score=57.87 Aligned_cols=163 Identities=12% Similarity=0.098 Sum_probs=98.3
Q ss_pred HHHHHHHhhCcccccccccchHHHHHHHhCCCC-------CCEEEEECCccCccccc--CCCceEEEEeCCHHHHHH---
Q 017080 90 YVHRVYDAIAPHFSSTRFAKWPKVATFLNSLPS-------GSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKI--- 157 (377)
Q Consensus 90 ~~~~~y~~~a~~y~~~~~~~~~~~~~~l~~~~~-------~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~--- 157 (377)
.++.++.++...+...|....+.++..+..+-| ..+||--|||.|+++-. -.|..+-|-+.|--|+-.
T Consensus 111 ~l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~F 190 (369)
T KOG2798|consen 111 TLKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSF 190 (369)
T ss_pred HHHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 455666666666666777777777777765432 35899999999997531 233444455665555321
Q ss_pred ----HHHc----------------------------------------CCeEEEeeCCCC---CCCCCceeEEEeccchh
Q 017080 158 ----CVDR----------------------------------------GHEVLVADAVNL---PYRSDFGDAAISIAVLH 190 (377)
Q Consensus 158 ----a~~~----------------------------------------~~~~~~~d~~~~---~~~~~~fD~V~~~~~l~ 190 (377)
++.. ....-.+|+.+. +-..++||+|+..+.+.
T Consensus 191 iLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID 270 (369)
T KOG2798|consen 191 ILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID 270 (369)
T ss_pred HHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee
Confidence 1111 011122343331 11235799999987766
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNG 270 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~a 270 (377)
--.+ ....|+.+..+|||||..+-.-+...+-.. ...-.....-.++.+++..+.+.-
T Consensus 271 Ta~N---ileYi~tI~~iLk~GGvWiNlGPLlYHF~d-------------------~~g~~~~~siEls~edl~~v~~~~ 328 (369)
T KOG2798|consen 271 TAHN---ILEYIDTIYKILKPGGVWINLGPLLYHFED-------------------THGVENEMSIELSLEDLKRVASHR 328 (369)
T ss_pred chHH---HHHHHHHHHHhccCCcEEEeccceeeeccC-------------------CCCCcccccccccHHHHHHHHHhc
Confidence 5555 889999999999999986654332211000 000011113356778899999999
Q ss_pred CCcc
Q 017080 271 SEEQ 274 (377)
Q Consensus 271 GF~~ 274 (377)
||++
T Consensus 329 GF~~ 332 (369)
T KOG2798|consen 329 GFEV 332 (369)
T ss_pred CcEE
Confidence 9988
No 239
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.79 E-value=0.0035 Score=64.14 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=44.3
Q ss_pred CCCEEEEECCccCccccc----C------C--CceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC-----CCC
Q 017080 122 SGSLVLDAGCGNGKYLGL----N------P--DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP-----YRS 177 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~----~------~--~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-----~~~ 177 (377)
...+|||.|||+|.++.. . . ...++|+|+++..+..++.+ +..+...|..... -..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 346999999999997521 1 1 25899999999999988765 2334444433211 112
Q ss_pred CceeEEEecc
Q 017080 178 DFGDAAISIA 187 (377)
Q Consensus 178 ~~fD~V~~~~ 187 (377)
+.||+|+++=
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 5799999963
No 240
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.64 E-value=0.0055 Score=54.62 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=57.8
Q ss_pred EEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCC-ceeEEEeccchhhc
Q 017080 126 VLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSD-FGDAAISIAVLHHL 192 (377)
Q Consensus 126 vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~-~fD~V~~~~~l~h~ 192 (377)
|.||||-.|.+.. ......++++|+++.-++.|+++ .+.+..+|.... ++.+ ..|.|+..++-..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHHH
Confidence 6899999999643 24445899999999999999987 377888886552 2333 37998888876643
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
...+|.+....++..-.+++.
T Consensus 80 -----I~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 80 -----IIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp -----HHHHHHHTGGGGTT--EEEEE
T ss_pred -----HHHHHHhhHHHhccCCeEEEe
Confidence 557788777777665566665
No 241
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.62 E-value=0.0066 Score=56.36 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=62.5
Q ss_pred CCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCCCCC---CceeEEEeccch
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLPYRS---DFGDAAISIAVL 189 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~~~~---~~fD~V~~~~~l 189 (377)
+.++..|||||.|+|.++.. ..+.+++++|+++.+.+..+++ +++++.+|+..+..+. +....|+++-..
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEecc
Confidence 44788999999999998764 3338999999999999998884 6889999999987554 345666665433
Q ss_pred hhcCChHHHHHHHHHHHHcccc
Q 017080 190 HHLSTESRRKKAIEELVRVVKK 211 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~Lkp 211 (377)
++. ..++.++...-+.
T Consensus 108 -~is-----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 108 -NIS-----SPILRKLLELYRF 123 (262)
T ss_dssp -TGH-----HHHHHHHHHHGGG
T ss_pred -cch-----HHHHHHHhhcccc
Confidence 332 3667777664344
No 242
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.012 Score=52.82 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=68.6
Q ss_pred CCCCCEEEEECCccCccccc--CCC-ceEEEEeCCHHHHHHHHHcCCeE---EEeeCCCCC---CCCCceeEEEeccchh
Q 017080 120 LPSGSLVLDAGCGNGKYLGL--NPD-CFFVGCDISPSLIKICVDRGHEV---LVADAVNLP---YRSDFGDAAISIAVLH 190 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~--~~~-~~v~gvD~s~~~~~~a~~~~~~~---~~~d~~~~~---~~~~~fD~V~~~~~l~ 190 (377)
..++..+||||+.||.|+.. ..+ .+|+++|....++.+--+.+-++ ...|+..+. + .+..|++++--.+.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~DvSFI 155 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-TEKPDLIVIDVSFI 155 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-ccCCCeEEEEeehh
Confidence 35789999999999999863 444 49999999999988766654333 334444432 2 23678999876665
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ...+|..+..+++|+|.++.-.
T Consensus 156 S------L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 156 S------LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred h------HHHHHHHHHHhcCCCceEEEEe
Confidence 3 5679999999999999877765
No 243
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.55 E-value=0.0074 Score=56.66 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=72.9
Q ss_pred hCCCCCCEEEEECCccCcc----ccc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-C-CCCCceeEE
Q 017080 118 NSLPSGSLVLDAGCGNGKY----LGL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P-YRSDFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~----~~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~-~-~~~~~fD~V 183 (377)
....++.+|||+.+|.|.= +.. .....+++.|+++.-+...+++ ++.....|.... + .....||.|
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 3457889999999999972 222 4467999999999988777765 344455566554 1 234469999
Q ss_pred Ee------ccchhhcCChH-------------HHHHHHHHHHHcc----ccCcEEEEEEcCC
Q 017080 184 IS------IAVLHHLSTES-------------RRKKAIEELVRVV----KKGSLVLITVWAV 222 (377)
Q Consensus 184 ~~------~~~l~h~~~~~-------------~~~~~l~~~~r~L----kpgG~l~i~~~~~ 222 (377)
+. .+++..-++.. .-.++|+.+.+.+ ||||+++.++-+.
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 88 22333333211 0357899999999 9999999987554
No 244
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0044 Score=58.42 Aligned_cols=102 Identities=25% Similarity=0.278 Sum_probs=66.5
Q ss_pred CCEEEEECCccCccc--c--cCCCc-eEEEEeCCHHHHHHHHHc--CCeE---------EEeeCCCCCCCCCceeEEEec
Q 017080 123 GSLVLDAGCGNGKYL--G--LNPDC-FFVGCDISPSLIKICVDR--GHEV---------LVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~--~--~~~~~-~v~gvD~s~~~~~~a~~~--~~~~---------~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.++|||+|.|.|.-+ . ..|.. .++-++.|+..-+....- ++.. ++.|-..+| +...|++|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp-~ad~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP-AADLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC-ccceeehhhhh
Confidence 467999999988743 2 25654 677778888765554332 2211 222222233 24567877777
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCcc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 225 (377)
.-|-|..++......++.+...+.|||.++|.+......
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 766666654435568999999999999999998765543
No 245
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.46 E-value=0.018 Score=56.09 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=64.1
Q ss_pred CCEEEEECCccCccc------------c-------cCCCceEEEEeCCHHHHHH----H---HH-----------cC-Ce
Q 017080 123 GSLVLDAGCGNGKYL------------G-------LNPDCFFVGCDISPSLIKI----C---VD-----------RG-HE 164 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~------------~-------~~~~~~v~gvD~s~~~~~~----a---~~-----------~~-~~ 164 (377)
..+|+|+|||+|..+ . ..|..+|..-|+-.+-... . ++ .+ -.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999742 0 1246788888875431111 0 00 00 01
Q ss_pred EEE----eeCCCCCCCCCceeEEEeccchhhcCCh-----------------------------------HHHHHHHHHH
Q 017080 165 VLV----ADAVNLPYRSDFGDAAISIAVLHHLSTE-----------------------------------SRRKKAIEEL 205 (377)
Q Consensus 165 ~~~----~d~~~~~~~~~~fD~V~~~~~l~h~~~~-----------------------------------~~~~~~l~~~ 205 (377)
++. +.+..--||.++.+++++...+||+... .++..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2333334789999999999999998731 0144556666
Q ss_pred HHccccCcEEEEEEcCCC
Q 017080 206 VRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 206 ~r~LkpgG~l~i~~~~~~ 223 (377)
++-|.|||.+++......
T Consensus 224 a~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHhccCcEEEEEEecCC
Confidence 778899999999976654
No 246
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.42 E-value=0.0089 Score=49.63 Aligned_cols=77 Identities=25% Similarity=0.251 Sum_probs=53.5
Q ss_pred eEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCceeEEEeccchhhcCC--------hHHHHHHHHHH
Q 017080 144 FFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDFGDAAISIAVLHHLST--------ESRRKKAIEEL 205 (377)
Q Consensus 144 ~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~~fD~V~~~~~l~h~~~--------~~~~~~~l~~~ 205 (377)
+|+|+|+-+.+++..+++ +++++..+-+++. .+.+++|+++.+ |.++|. .+.-..+|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999998887 4778887777764 233589988775 455553 22256889999
Q ss_pred HHccccCcEEEEEEcCC
Q 017080 206 VRVVKKGSLVLITVWAV 222 (377)
Q Consensus 206 ~r~LkpgG~l~i~~~~~ 222 (377)
.++|+|||.+.+..+..
T Consensus 79 l~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHEEEEEEEEEEE--S
T ss_pred HHhhccCCEEEEEEeCC
Confidence 99999999999988764
No 247
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.0084 Score=59.51 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=67.2
Q ss_pred CCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCC---CCceeEEEeccc
Q 017080 121 PSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYR---SDFGDAAISIAV 188 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~---~~~fD~V~~~~~ 188 (377)
.++.+|||+=||.|.|.-. ....+|+|+|+++.+++.|+++ |+.|..++++.+... ...+|.|+..=-
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 4667999999999998643 4667999999999999999887 678999999886422 357899988311
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
=--+ -..+++.+.+ ++|-.++++++
T Consensus 372 R~G~-----~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 372 RAGA-----DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCCC-----CHHHHHHHHh-cCCCcEEEEeC
Confidence 0000 1245555544 56777888886
No 248
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.30 E-value=0.029 Score=51.03 Aligned_cols=108 Identities=22% Similarity=0.318 Sum_probs=67.1
Q ss_pred hHHHHHHHh-CCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCCCCCC
Q 017080 110 WPKVATFLN-SLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLPYRSD 178 (377)
Q Consensus 110 ~~~~~~~l~-~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~ 178 (377)
...+...+. .+++..+|+|||||.-=++ ...++..++|+|++..+++..... ..++...|+..-+ +..
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~ 170 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKE 170 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTS
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCC
Confidence 334444443 4566789999999987653 346778999999999999887765 4566777877643 467
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..|+.+..=+++.+.... . ..--++...++- =.++++.+.
T Consensus 171 ~~DlaLllK~lp~le~q~-~-g~g~~ll~~~~~-~~~vVSfPt 210 (251)
T PF07091_consen 171 PADLALLLKTLPCLERQR-R-GAGLELLDALRS-PHVVVSFPT 210 (251)
T ss_dssp EESEEEEET-HHHHHHHS-T-THHHHHHHHSCE-SEEEEEEES
T ss_pred CcchhhHHHHHHHHHHHh-c-chHHHHHHHhCC-CeEEEeccc
Confidence 789999999998876532 2 232333333432 256666654
No 249
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.029 Score=54.17 Aligned_cols=102 Identities=25% Similarity=0.218 Sum_probs=69.6
Q ss_pred hCCCCCCEEEEECCccCccccc--------CCCc-----------------------------------eEEEEeCCHHH
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL--------NPDC-----------------------------------FFVGCDISPSL 154 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~--------~~~~-----------------------------------~v~gvD~s~~~ 154 (377)
+.-.++..++|-=||+|.++.. .||. .++|+|+++.+
T Consensus 187 agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~ 266 (381)
T COG0116 187 AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH 266 (381)
T ss_pred cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence 3445668999999999997421 2321 27799999999
Q ss_pred HHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEeccchh-hcCChHH----HHHHHHHHHHccccCcEEEEEE
Q 017080 155 IKICVDR--------GHEVLVADAVNLPYRSDFGDAAISIAVLH-HLSTESR----RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 155 ~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~~~l~-h~~~~~~----~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++.|+.| -+.|.++|+..++.+-+.+|+|||+=--. -+.+... ...+.+.+.+.++.-+..+++.
T Consensus 267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 267 IEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 9999988 37899999999875447899999975332 1333211 2344445556666556666653
No 250
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.23 E-value=0.0022 Score=54.87 Aligned_cols=61 Identities=23% Similarity=0.230 Sum_probs=40.9
Q ss_pred EEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCC--CCCCc-eeEEEe
Q 017080 125 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLP--YRSDF-GDAAIS 185 (377)
Q Consensus 125 ~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~~-fD~V~~ 185 (377)
.|+|+.||.|..+-. ....+|+++|+++..++.++.+ ++.++.+|+.++. +.... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 699999999986532 2355899999999999999987 4788899887642 22222 677776
No 251
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.23 E-value=0.0098 Score=51.79 Aligned_cols=93 Identities=22% Similarity=0.163 Sum_probs=61.6
Q ss_pred CCCCEEEEECCccCcccc--c-CCCceEEEEeCCHHHHHHHHHc----C--CeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 121 PSGSLVLDAGCGNGKYLG--L-NPDCFFVGCDISPSLIKICVDR----G--HEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~-~~~~~v~gvD~s~~~~~~a~~~----~--~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
-.|++|||+|+|.|..+. . .....|+..|+.|......+-+ + +.+...|.-. .+..||+++...++..
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 358899999999998643 2 3334899999998877665544 3 4445555433 4678999999998764
Q ss_pred cCChHHHHHHHHHHHHccc-cCcEEEEEEc
Q 017080 192 LSTESRRKKAIEELVRVVK-KGSLVLITVW 220 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~Lk-pgG~l~i~~~ 220 (377)
-+- -.+++. +.+.|+ .|-.+++.++
T Consensus 155 ~~~---a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 155 HTE---ADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred chH---HHHHHH-HHHHHHhCCCEEEEeCC
Confidence 443 456777 444444 4444554444
No 252
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.18 E-value=0.0016 Score=51.47 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=41.5
Q ss_pred EEECCccCcccc----c-CCC--ceEEEEeCCH---HHHHHHHHc----CCeEEEeeCCCC-C-CCCCceeEEEeccchh
Q 017080 127 LDAGCGNGKYLG----L-NPD--CFFVGCDISP---SLIKICVDR----GHEVLVADAVNL-P-YRSDFGDAAISIAVLH 190 (377)
Q Consensus 127 LDiGcG~G~~~~----~-~~~--~~v~gvD~s~---~~~~~a~~~----~~~~~~~d~~~~-~-~~~~~fD~V~~~~~l~ 190 (377)
||||+..|..+. . .+. .+++++|+.+ ...+..++. +++++.++..+. + ++.++||+|+.-..-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 689988887532 1 222 3799999999 444444432 578888887652 2 3367999999876311
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+. ....+..+.+.|+|||.+++-+
T Consensus 81 -~~~---~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 -YEA---VLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -HHH---HHHHHHHHGGGEEEEEEEEEE-
T ss_pred -HHH---HHHHHHHHHHHcCCCeEEEEeC
Confidence 112 5678899999999999998864
No 253
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.16 E-value=0.013 Score=56.79 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=37.1
Q ss_pred EEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC
Q 017080 125 LVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL 173 (377)
Q Consensus 125 ~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~ 173 (377)
+|||+-||.|.++-. ....+|+|||+++.+++.|+.+ |++|+.++++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 899999999998642 4456999999999999999877 678888877553
No 254
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.00 E-value=0.0094 Score=49.55 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=31.1
Q ss_pred EEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc
Q 017080 125 LVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 125 ~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
.+||||||.|.++. ..+..+++++|+++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 48999999999642 36677999999999999888776
No 255
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.97 E-value=0.029 Score=49.12 Aligned_cols=98 Identities=20% Similarity=0.354 Sum_probs=58.3
Q ss_pred CCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc--------------CCeEEEeeCCC-CC--CCCCce
Q 017080 122 SGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR--------------GHEVLVADAVN-LP--YRSDFG 180 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~--------------~~~~~~~d~~~-~~--~~~~~f 180 (377)
..-.+.|||||-|.++ ..+|+..++|.+|-...-+..+++ |+.+...++.. +| |..+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4457999999999865 358999999999877666665554 34445444433 22 112222
Q ss_pred eEEEeccchhhcCChHH-----HHHHHHHHHHccccCcEEEEEE
Q 017080 181 DAAISIAVLHHLSTESR-----RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~-----~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+-++...-=-|+..... -..++.+..-+|++||.++..+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22111111112111000 1367888999999999998875
No 256
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.0036 Score=52.70 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=65.6
Q ss_pred CCCEEEEECCccCcc----cc-cCCCceEEEEeCCHHHHHHHHHc---CC-------eEEEeeCCC--CCCCCCceeEEE
Q 017080 122 SGSLVLDAGCGNGKY----LG-LNPDCFFVGCDISPSLIKICVDR---GH-------EVLVADAVN--LPYRSDFGDAAI 184 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~----~~-~~~~~~v~gvD~s~~~~~~a~~~---~~-------~~~~~d~~~--~~~~~~~fD~V~ 184 (377)
.|.+|||+|.|--.+ .. ..|...|...|-+...++-.++. |. ..+.-+... .......||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 467999999996332 22 47888999999999988776654 21 111111111 112245899999
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
|...+..=.- ...+++-+.++|+|.|..++..+
T Consensus 109 aADClFfdE~---h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 109 AADCLFFDEH---HESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred eccchhHHHH---HHHHHHHHHHHhCcccceeEecC
Confidence 9987754322 67899999999999999777654
No 257
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.87 E-value=0.042 Score=55.69 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=70.2
Q ss_pred CCCCEEEEECCcc-Cccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----------C----------C
Q 017080 121 PSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----------P----------Y 175 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-----------~----------~ 175 (377)
.++.+|+=+|+|. |..+ ....|+.|+++|.++..++.++..+.++...|..+. . +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 4688999999999 6654 235677999999999999999998888664443220 0 0
Q ss_pred CC--CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 176 RS--DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 176 ~~--~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.+ +.+|+|+.......-+. +..+.+++.+.+||||.++..-.
T Consensus 243 ~~~~~gaDVVIetag~pg~~a---P~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPA---PKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccC---cchHHHHHHHhcCCCCEEEEEcc
Confidence 11 35899998776544434 43446999999999999877643
No 258
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.87 E-value=0.013 Score=58.15 Aligned_cols=98 Identities=22% Similarity=0.283 Sum_probs=63.6
Q ss_pred hCCCCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-C-CCC---CceeEE
Q 017080 118 NSLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-P-YRS---DFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~-~-~~~---~~fD~V 183 (377)
..++.+..+||+-||||.+.- ..+-..|+|+++++..++.|+.+ |.+|+++-++++ + +-. ++=++|
T Consensus 379 ~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v 458 (534)
T KOG2187|consen 379 AGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLV 458 (534)
T ss_pred hCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceE
Confidence 457888999999999999753 35566999999999999999887 688999966663 2 111 122333
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
....--. .. --..+++.+.+.-+|-=.++++.
T Consensus 459 ~iiDPpR--~G--lh~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 459 AIIDPPR--KG--LHMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred EEECCCc--cc--ccHHHHHHHHhccCccceEEEEc
Confidence 2221100 00 01356666666665666666664
No 259
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.84 E-value=0.056 Score=48.11 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=62.5
Q ss_pred CCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~V~~~ 186 (377)
.++.+.++.||||-.+.+.. ..+...+++.|+++..++.|.++ .++...+|....-.++..+|+|+..
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEe
Confidence 34667789999999998753 37777999999999999988776 2445555553322334578999888
Q ss_pred cchhhcCChHHHHHHHHHHHHccc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVK 210 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~Lk 210 (377)
++-.-+ ...+|.+-.+.|+
T Consensus 93 GMGG~l-----I~~ILee~~~~l~ 111 (226)
T COG2384 93 GMGGTL-----IREILEEGKEKLK 111 (226)
T ss_pred CCcHHH-----HHHHHHHhhhhhc
Confidence 776543 4567777777775
No 260
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.52 E-value=0.062 Score=51.35 Aligned_cols=93 Identities=14% Similarity=0.222 Sum_probs=66.9
Q ss_pred hCCCCCCEEEEECCccCc--ccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC--CCCCCCceeEEEeccchh
Q 017080 118 NSLPSGSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN--LPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~--~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~--~~~~~~~fD~V~~~~~l~ 190 (377)
..+.||.+|+=+|+| |. ++- ...+++|+++|.|++-.+.|++.+.......... ...-.+.||+|+..-. .
T Consensus 162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~ 239 (339)
T COG1064 162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P 239 (339)
T ss_pred cCCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h
Confidence 457899999999999 65 321 2466999999999999999999866554432211 1111234999998754 2
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..+....+.||+||.+++.-..
T Consensus 240 ---------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ---------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---------hhHHHHHHHHhcCCEEEEECCC
Confidence 4566778889999999988544
No 261
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.50 E-value=0.1 Score=47.00 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=70.6
Q ss_pred CCCCCCEEEEECCccCcccc-----cCCCceEEEEeCCHH----HHHHHHHc-CCeEEEeeCCCCC---CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGNGKYLG-----LNPDCFFVGCDISPS----LIKICVDR-GHEVLVADAVNLP---YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~-----~~~~~~v~gvD~s~~----~~~~a~~~-~~~~~~~d~~~~~---~~~~~fD~V~~ 185 (377)
+++||.+||-+|++.|.... ..|..-|++++.|+. ++..|+++ |+--++-|+.... ..-+-.|+|++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 57899999999999998542 278889999999874 56777766 6666777876532 11235677766
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
- ++.+++...+.-+....||+||-++|+.-+
T Consensus 233 D-----vaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 233 D-----VAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred c-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 4 333333556667788899999999998644
No 262
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.46 E-value=0.022 Score=50.47 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=58.8
Q ss_pred CCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCC----CCCCCceeEEEecc
Q 017080 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR--------GHEVLVADAVNL----PYRSDFGDAAISIA 187 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~----~~~~~~fD~V~~~~ 187 (377)
....|+|.-||.|.... ...+..|+++|++|.-+..|+.+ .+.|+++|+.++ .+....+|+|....
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 44589999999887653 26778999999999999999987 478999998763 34344566766654
Q ss_pred chhhcCChHHHHHHHHHHHHccccC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKG 212 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~Lkpg 212 (377)
....-.- ...-+-.+...++|.
T Consensus 174 pwggp~y---~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 174 PWGGPSY---LRADVYDLETHLKPM 195 (263)
T ss_pred CCCCcch---hhhhhhhhhhhcchh
Confidence 3332111 333444455555554
No 263
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.61 E-value=0.15 Score=46.62 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=64.4
Q ss_pred CCCEEEEECCccCcc---cccCCCceEEEEeCCHHHHHHHHH--c--------CCeEEEee--CCC---CCCCCCc-eeE
Q 017080 122 SGSLVLDAGCGNGKY---LGLNPDCFFVGCDISPSLIKICVD--R--------GHEVLVAD--AVN---LPYRSDF-GDA 182 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~---~~~~~~~~v~gvD~s~~~~~~a~~--~--------~~~~~~~d--~~~---~~~~~~~-fD~ 182 (377)
...+||++|+|+|.. +....+++|+-.|+.......... . +..+.+.. -.+ ..+.... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 456899999999963 234678899999986654432222 1 11222222 111 1122233 999
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
|++..++.+-.. ...++.-++..|..+|.+++...-.
T Consensus 166 ilasDvvy~~~~---~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 166 ILASDVVYEEES---FEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEeeeeecCCc---chhHHHHHHHHHhcCCeEEEEEecc
Confidence 999999998888 7788888888898888777766543
No 264
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.43 E-value=0.12 Score=50.34 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=69.9
Q ss_pred CCCCCEEEEECCccCcc----ccc-CCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---CCCCceeEEE
Q 017080 120 LPSGSLVLDAGCGNGKY----LGL-NPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP---YRSDFGDAAI 184 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~----~~~-~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~~~~~fD~V~ 184 (377)
..+|.||||+.+..|.= +.. .....|++.|.+..-+.....+ |..+...|...+| ++. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 35789999999999862 222 4556899999999988877766 3344555665554 333 899998
Q ss_pred eccchhh------------cCC-------hHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 185 SIAVLHH------------LST-------ESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 185 ~~~~l~h------------~~~-------~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
.-.-..- ... .....++|......+++||+|+-++-+...
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 5221111 010 000357888899999999999998765543
No 265
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.21 E-value=0.035 Score=43.87 Aligned_cols=40 Identities=10% Similarity=0.290 Sum_probs=30.9
Q ss_pred ceeEEEeccchhhcC--C-hHHHHHHHHHHHHccccCcEEEEE
Q 017080 179 FGDAAISIAVLHHLS--T-ESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~--~-~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.||+|+|..|.-|+. . ++....+++.+++.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999999876542 1 233789999999999999998887
No 266
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.14 E-value=0.11 Score=48.95 Aligned_cols=71 Identities=17% Similarity=0.110 Sum_probs=38.1
Q ss_pred CCEEEEECCccCcc---c-ccCCCceEEEEeCCHHHHHHHHHc---C------CeEEEeeCCC-----CCCCCCceeEEE
Q 017080 123 GSLVLDAGCGNGKY---L-GLNPDCFFVGCDISPSLIKICVDR---G------HEVLVADAVN-----LPYRSDFGDAAI 184 (377)
Q Consensus 123 ~~~vLDiGcG~G~~---~-~~~~~~~v~gvD~s~~~~~~a~~~---~------~~~~~~d~~~-----~~~~~~~fD~V~ 184 (377)
.-++||||+|..-. + ....+++++|+|+++..++.|+++ | |+++...-.. +..+.+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 46899999998652 1 223489999999999999999986 3 5554332211 112346899999
Q ss_pred eccchhhcC
Q 017080 185 SIAVLHHLS 193 (377)
Q Consensus 185 ~~~~l~h~~ 193 (377)
|+=-++.-.
T Consensus 183 CNPPFy~s~ 191 (299)
T PF05971_consen 183 CNPPFYSSQ 191 (299)
T ss_dssp E-----SS-
T ss_pred cCCccccCh
Confidence 987776543
No 267
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.09 E-value=0.39 Score=45.30 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=69.4
Q ss_pred hCCCCCCEEEEECCcc-Cccc----ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----------CCCCCcee
Q 017080 118 NSLPSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----------PYRSDFGD 181 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~----~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-----------~~~~~~fD 181 (377)
..++.|.+||=+|+|+ |.++ ....-.+|+.+|+++.-++.|++-+.+.+.-+.... .+.+..+|
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence 4567899999999998 6543 334455999999999999999998766544333221 12234588
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
+.+....+ ...++.....+|+||.+++..+..+
T Consensus 245 ~~~dCsG~---------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 245 VTFDCSGA---------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred eEEEccCc---------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 88776543 3566667888999999888877654
No 268
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.06 E-value=0.21 Score=46.49 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=71.1
Q ss_pred CCCCCEEEEECCccCccccc---CCCc-eEEEEeCCHHHHHHHHHc-----------CCeEEEeeCCCC--CCCCCceeE
Q 017080 120 LPSGSLVLDAGCGNGKYLGL---NPDC-FFVGCDISPSLIKICVDR-----------GHEVLVADAVNL--PYRSDFGDA 182 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~---~~~~-~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~--~~~~~~fD~ 182 (377)
++...+||=||.|.|.+++. ++.. ++.-+|+....++..++. .+....+|...+ ..+.++||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 45668999999999998864 4333 788899999888887764 467777876553 245789999
Q ss_pred EEeccchhhcCChHH-HHHHHHHHHHccccCcEEEEEE
Q 017080 183 AISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 183 V~~~~~l~h~~~~~~-~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
|+.-..=--.+.... ...++..+.+.|||||++.+..
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 987432111111100 3577888999999999988874
No 269
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.75 E-value=0.12 Score=52.32 Aligned_cols=93 Identities=23% Similarity=0.213 Sum_probs=67.8
Q ss_pred CCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-----------------------CC
Q 017080 122 SGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-----------------------LP 174 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-----------------------~~ 174 (377)
++.+||=+|+|. |..+. ...++.|+.+|.++..++.++..+.+++..|..+ ++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~ 242 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFA 242 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHH
Confidence 468999999998 66542 2567789999999999999988877776555421 11
Q ss_pred CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEE
Q 017080 175 YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 175 ~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
-.-..+|+|+....+.--+. |.-+.+++.+.+|||+.++-
T Consensus 243 e~~~~~DIVI~TalipG~~a---P~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 243 AQAKEVDIIITTALIPGKPA---PKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHhCCCCEEEECcccCCCCC---CeeehHHHHhhCCCCCEEEE
Confidence 01246899988776655444 55688899999999988663
No 270
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.68 E-value=0.053 Score=45.81 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=38.3
Q ss_pred CCceeEEEeccchhhcC--------ChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 177 SDFGDAAISIAVLHHLS--------TESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~--------~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.++||.+.|..+++|+- |+....+.+.++.++|||||.+++..+...
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 57899999999999963 211146888999999999999999988764
No 271
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.49 E-value=0.24 Score=43.96 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=51.2
Q ss_pred CCCCCCEEEEECCccCccc-------cc-CCCceEEEEeCCHHHH--HHHHH----cCCeEEEeeCCCCC----CC----
Q 017080 119 SLPSGSLVLDAGCGNGKYL-------GL-NPDCFFVGCDISPSLI--KICVD----RGHEVLVADAVNLP----YR---- 176 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~-------~~-~~~~~v~gvD~s~~~~--~~a~~----~~~~~~~~d~~~~~----~~---- 176 (377)
.++| ..|+|+|.-.|.-+ .. .+.++|+|+|+..... ..... .+++++++|..+.. ..
T Consensus 30 ~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206)
T PF04989_consen 30 ELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELAS 108 (206)
T ss_dssp HH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS--
T ss_pred HhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhc
Confidence 3444 59999999998732 22 4778999999953322 11222 36999999987642 11
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
.....+|+. .+-|...+ ..+.|+....+++||+++++.+..
T Consensus 109 ~~~~vlVil-Ds~H~~~h---vl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 109 PPHPVLVIL-DSSHTHEH---VLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp --SSEEEEE-SS----SS---HHHHHHHHHHT--TT-EEEETSHH
T ss_pred cCCceEEEE-CCCccHHH---HHHHHHHhCccCCCCCEEEEEecc
Confidence 122233333 33333344 678888899999999999887643
No 272
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.43 E-value=0.31 Score=47.73 Aligned_cols=99 Identities=22% Similarity=0.316 Sum_probs=65.6
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHc-CCeEEEeeCCC-C-----CC-CCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVN-L-----PY-RSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~-~-----~~-~~~~fD~V~ 184 (377)
..+.++.+||.+|||. |..+. ...+. .++++|.++...+.+++. +..++...-.+ + .+ ....+|+|+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 3567889999999987 66542 23454 699999999999999887 54433221111 1 11 223689888
Q ss_pred eccc-----------hhhc----CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAV-----------LHHL----STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~-----------l~h~----~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..-. +.|+ .+ ....+.++.+.|+|+|.+++..
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETD---RPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred ECCCCcccccccccccccccccccC---chHHHHHHHHHhccCCEEEEEc
Confidence 7532 1111 23 3568899999999999998874
No 273
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.37 E-value=0.081 Score=52.74 Aligned_cols=95 Identities=12% Similarity=0.241 Sum_probs=74.6
Q ss_pred CCEEEEECCccCcccc--------cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCCCCCCceeEEEecc
Q 017080 123 GSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~--------~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~V~~~~ 187 (377)
...|+=+|+|-|-+.+ .....++++++-+|.++-..... .++++..|+..++-|..+.|++++ .
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 3478899999998642 14567999999999988666554 588899999999865688898876 5
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.|..+.|.|.-++.|.-+-+.|||+|+.+=.
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 6677777666689999999999999875543
No 274
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.33 E-value=0.33 Score=46.68 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=58.6
Q ss_pred CCCCEEEEECCccCccc-----------c---------cCCCceEEEEeCCHHHHH-----------HHHHcCCeE---E
Q 017080 121 PSGSLVLDAGCGNGKYL-----------G---------LNPDCFFVGCDISPSLIK-----------ICVDRGHEV---L 166 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~-----------~---------~~~~~~v~gvD~s~~~~~-----------~a~~~~~~~---~ 166 (377)
+..-+|+|+||..|..+ . ..|..+|+--|+-.+--. .....+--| +
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 34469999999999842 0 023468888897543111 111112222 3
Q ss_pred EeeCCCCCCCCCceeEEEeccchhhcCCh------------------------------------HHHHHHHHHHHHccc
Q 017080 167 VADAVNLPYRSDFGDAAISIAVLHHLSTE------------------------------------SRRKKAIEELVRVVK 210 (377)
Q Consensus 167 ~~d~~~~~~~~~~fD~V~~~~~l~h~~~~------------------------------------~~~~~~l~~~~r~Lk 210 (377)
-+.+..--+|+++.|++++..++||+... .++..+|+.=++-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 34555544889999999999999998631 124556666677889
Q ss_pred cCcEEEEEEcCCCc
Q 017080 211 KGSLVLITVWAVEQ 224 (377)
Q Consensus 211 pgG~l~i~~~~~~~ 224 (377)
|||++++.......
T Consensus 175 ~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 175 PGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEE-ST
T ss_pred cCcEEEEEEeeccc
Confidence 99999999876554
No 275
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=0.71 Score=38.55 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=63.3
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc-c-CCC-ceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCCCCCCCCc
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG-L-NPD-CFFVGCDISPSLIKICVDR--------GHEVLVADAVNLPYRSDF 179 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~-~-~~~-~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~ 179 (377)
..+..++.. .+..+.+|+|+|.|+..- . .-+ ...+|++++|..+..++-+ ..+|..-|+-...+. .
T Consensus 62 ~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~--d 138 (199)
T KOG4058|consen 62 ENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR--D 138 (199)
T ss_pred HHHHHHccC-CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc--c
Confidence 334444433 344589999999999642 2 222 4789999999999887755 466777777665543 4
Q ss_pred eeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 180 fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
|..|+.+.+-.-+++ +-.++..-+..|..++-.-+.
T Consensus 139 y~~vviFgaes~m~d------Le~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 139 YRNVVIFGAESVMPD------LEDKLRTELPANTRVVACRFP 174 (199)
T ss_pred cceEEEeehHHHHhh------hHHHHHhhCcCCCeEEEEecC
Confidence 555665555444444 233444455666666655443
No 276
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.23 E-value=0.31 Score=46.26 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=85.6
Q ss_pred HHHHHHhhCccccc--ccccchHHHHHHHhCCCCCCEEEEECCccCccc--ccCCCceEEEEeCCHHHHHHHHHc-----
Q 017080 91 VHRVYDAIAPHFSS--TRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYL--GLNPDCFFVGCDISPSLIKICVDR----- 161 (377)
Q Consensus 91 ~~~~y~~~a~~y~~--~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~--~~~~~~~v~gvD~s~~~~~~a~~~----- 161 (377)
...-|+--...|-. .......-+.+-++...+|.-|+|-=-|||.++ ...-|+.|+|.||+-.++...+..
T Consensus 175 li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~ 254 (421)
T KOG2671|consen 175 LIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIK 254 (421)
T ss_pred HhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchh
Confidence 34445544444532 223334445555667899999999999999976 347788999999999888743322
Q ss_pred ------C-----CeEEEeeCCCCCCCC-CceeEEEecc------------------------chhhcCChHH------HH
Q 017080 162 ------G-----HEVLVADAVNLPYRS-DFGDAAISIA------------------------VLHHLSTESR------RK 199 (377)
Q Consensus 162 ------~-----~~~~~~d~~~~~~~~-~~fD~V~~~~------------------------~l~h~~~~~~------~~ 199 (377)
+ +.++.+|..+.++.. ..||.|+|-= ...|+|..+. ..
T Consensus 255 aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~ 334 (421)
T KOG2671|consen 255 ANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVY 334 (421)
T ss_pred HhHHHhCCcchhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHh
Confidence 1 567888998876544 5799999921 1223333111 34
Q ss_pred HHHHHHHHccccCcEEEEEEc
Q 017080 200 KAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 200 ~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..|.-.+++|..||++++--+
T Consensus 335 dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 335 DLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hHHHhhHhhhhcCceEEEecC
Confidence 556667888899999888655
No 277
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=92.77 E-value=0.094 Score=48.50 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=56.6
Q ss_pred CCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHHc--------------CCeE---EEeeCCCCCC-CCC-
Q 017080 121 PSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVDR--------------GHEV---LVADAVNLPY-RSD- 178 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~--------------~~~~---~~~d~~~~~~-~~~- 178 (377)
-.+.+|||+|||.|.-.. ......+...|.|...++...-. ...+ ...+..++-+ ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 467899999999987432 22335777777777665322111 0111 1110001111 113
Q ss_pred -ceeEEEeccchhhcCChHHHHHH-HHHHHHccccCcEEEEE
Q 017080 179 -FGDAAISIAVLHHLSTESRRKKA-IEELVRVVKKGSLVLIT 218 (377)
Q Consensus 179 -~fD~V~~~~~l~h~~~~~~~~~~-l~~~~r~LkpgG~l~i~ 218 (377)
.||+|.+..++..... ...+ +......++++|.++..
T Consensus 195 ~~ydlIlsSetiy~~~~---~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDS---LAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCcch---hhhhHhhhhhhcCCccchhhhh
Confidence 7999999999988777 3444 56666777888887765
No 278
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.71 E-value=0.45 Score=45.70 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=60.7
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEe----eCCCCCCCCCceeEEEeccchhh
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVA----DAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~----d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.++.+||=+|+|. |.++. ...++ +|+++|.++..++.+++.+...... ++..+....+.+|+|+..-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~---- 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS---- 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC----
Confidence 4688999999865 54432 24566 7999999999999999887654321 1111111123588887642
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.. ...+....+.|+|||.+++.-.
T Consensus 244 -G~----~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 -GH----PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -CC----HHHHHHHHHHhhcCCEEEEEcc
Confidence 22 2467788899999999888753
No 279
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.65 E-value=0.76 Score=43.54 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=64.1
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------CCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------PYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~------~~~~~~fD~V~~~~~ 188 (377)
.+.++.+||..|+|. |..+. ...+.+|++++.++...+.+++.++..+..+-... ....+.+|+|+....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g 241 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG 241 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC
Confidence 467788999988763 55432 25677899999999999998777665444332211 123457898875421
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
....++++.+.|+++|.++....
T Consensus 242 ---------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 ---------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ---------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13578889999999999887643
No 280
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.54 E-value=0.82 Score=44.26 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=65.5
Q ss_pred CCCCEEEEECCcc-Ccccc----cCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCC------CCCCC-CceeEEEecc
Q 017080 121 PSGSLVLDAGCGN-GKYLG----LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAVN------LPYRS-DFGDAAISIA 187 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~------~~~~~-~~fD~V~~~~ 187 (377)
.++.+|+=+|||+ |.++. .....+|+.+|+++.-++.|++. +.........+ ..... ..+|+++-..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 3445999999999 87642 25556999999999999999984 44443333221 01112 3689888765
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
. . ...+..+.+.++|||.+.+.-...
T Consensus 247 G-----~----~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 247 G-----S----PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred C-----C----HHHHHHHHHHhcCCCEEEEEeccC
Confidence 4 2 358899999999999998886553
No 281
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.45 E-value=0.078 Score=41.71 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCCEEEEECCccCcccc--cCCCceEEEEeC
Q 017080 122 SGSLVLDAGCGNGKYLG--LNPDCFFVGCDI 150 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~ 150 (377)
+....+|||||+|.+.- ...|..-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 35689999999999753 245666788885
No 282
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=92.44 E-value=0.31 Score=46.12 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=51.6
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCCCC-----C
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVNLP-----Y 175 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-----~ 175 (377)
.++++.+. +.++..++|.=+|.|..+. ..+...|+|+|.++.+++.++++ ++.++.+++.++. .
T Consensus 10 ~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~ 88 (305)
T TIGR00006 10 DEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDEL 88 (305)
T ss_pred HHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhc
Confidence 34455553 3567799999999998643 34458999999999999999875 3555666655432 1
Q ss_pred CCCceeEEEecc
Q 017080 176 RSDFGDAAISIA 187 (377)
Q Consensus 176 ~~~~fD~V~~~~ 187 (377)
..+++|.|+...
T Consensus 89 ~~~~vDgIl~DL 100 (305)
T TIGR00006 89 LVTKIDGILVDL 100 (305)
T ss_pred CCCcccEEEEec
Confidence 234566666643
No 283
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.90 E-value=0.26 Score=40.02 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCCCCEEEEECCccCcc-ccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-CCceeEEEec
Q 017080 111 PKVATFLNSLPSGSLVLDAGCGNGKY-LGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISI 186 (377)
Q Consensus 111 ~~~~~~l~~~~~~~~vLDiGcG~G~~-~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~-~~~fD~V~~~ 186 (377)
.+++.++....+..+|+|||-|.=.- +.. ..|..|+++|+.+. .++ .+++++..|+.+..+. -...|+|.+.
T Consensus 2 ~~~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~-~g~~~v~DDif~P~l~iY~~a~lIYSi 77 (127)
T PF03686_consen 2 VDFAEYIARLNNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP-EGVNFVVDDIFNPNLEIYEGADLIYSI 77 (127)
T ss_dssp HHHHHHHHHHS-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEE
T ss_pred chHHHHHHHhCCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc-cCcceeeecccCCCHHHhcCCcEEEEe
Confidence 34555555444556999999887442 221 45689999999998 344 5799999999984321 1356999886
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
..-. | +...+.++++.+ |.-++|.....+.
T Consensus 78 RPP~-----E-l~~~il~lA~~v--~adlii~pL~~e~ 107 (127)
T PF03686_consen 78 RPPP-----E-LQPPILELAKKV--GADLIIRPLGGES 107 (127)
T ss_dssp S--T-----T-SHHHHHHHHHHH--T-EEEEE-BTTB-
T ss_pred CCCh-----H-HhHHHHHHHHHh--CCCEEEECCCCCC
Confidence 4311 1 455666666654 5667777666543
No 284
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.75 E-value=2.2 Score=43.37 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=73.2
Q ss_pred ccchHHHHHHHhC---CCCCCEEEEECCccCccccc-------CC-CceEEEEeCCHHHHHHHHHc----CCeE----EE
Q 017080 107 FAKWPKVATFLNS---LPSGSLVLDAGCGNGKYLGL-------NP-DCFFVGCDISPSLIKICVDR----GHEV----LV 167 (377)
Q Consensus 107 ~~~~~~~~~~l~~---~~~~~~vLDiGcG~G~~~~~-------~~-~~~v~gvD~s~~~~~~a~~~----~~~~----~~ 167 (377)
+...+.+..++.. ..+..+|+|-.||+|.++.. .. ...+.|.|+++.....|+.+ ++.. ..
T Consensus 168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~ 247 (489)
T COG0286 168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRH 247 (489)
T ss_pred cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccc
Confidence 3344444444432 24667999999999986521 11 36799999999999999987 4432 33
Q ss_pred eeCCCCC-C----CCCceeEEEeccchh---hcC-------------------ChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 168 ADAVNLP-Y----RSDFGDAAISIAVLH---HLS-------------------TESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 168 ~d~~~~~-~----~~~~fD~V~~~~~l~---h~~-------------------~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+|-..-| . ..+.||+|+++--+. |.. ....-.++++++...|+|||+..|..+
T Consensus 248 ~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 248 GDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 3333323 2 236799998854332 111 111026899999999999997777665
Q ss_pred C
Q 017080 221 A 221 (377)
Q Consensus 221 ~ 221 (377)
.
T Consensus 328 ~ 328 (489)
T COG0286 328 D 328 (489)
T ss_pred C
Confidence 4
No 285
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=1.4 Score=40.07 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=68.8
Q ss_pred HHhCCCCCCEEEEECCccCccc----cc----CCCceEEEEeCCHHHHHHHHHc------C--CeEEEeeCCC-CC-CCC
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYL----GL----NPDCFFVGCDISPSLIKICVDR------G--HEVLVADAVN-LP-YRS 177 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~----~~----~~~~~v~gvD~s~~~~~~a~~~------~--~~~~~~d~~~-~~-~~~ 177 (377)
-+..+..+...+|+|+|+-.=+ .. ..-.+++.+|+|...++...+. + +.-+.+|.+. +. .+.
T Consensus 72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR 151 (321)
T ss_pred HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC
Confidence 3344555789999999997622 21 2335899999999988543332 3 3335566543 11 222
Q ss_pred -CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 178 -DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 178 -~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
++==.++...++..+...+ ...+|.++...|+||-.+++.+
T Consensus 152 ~~~Rl~~flGStlGN~tp~e-~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGE-CAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred CCeEEEEEecccccCCChHH-HHHHHHHHHhcCCCcceEEEec
Confidence 3323445556788887655 7899999999999999999975
No 286
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=91.72 E-value=3.2 Score=38.45 Aligned_cols=141 Identities=10% Similarity=-0.032 Sum_probs=83.4
Q ss_pred CEEEEECCccCcc-ccc--CCCceEEEEeCCHHHHHH---HHH------cCCeEEEeeCCC-C-------CCCCCceeEE
Q 017080 124 SLVLDAGCGNGKY-LGL--NPDCFFVGCDISPSLIKI---CVD------RGHEVLVADAVN-L-------PYRSDFGDAA 183 (377)
Q Consensus 124 ~~vLDiGcG~G~~-~~~--~~~~~v~gvD~s~~~~~~---a~~------~~~~~~~~d~~~-~-------~~~~~~fD~V 183 (377)
..|+.+|||-=.- .+. .++..++-+|.-..+-.. .++ .+..++..|+.. + .+..+.--++
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~ 162 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAW 162 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeee
Confidence 4799999998442 222 235677777764433211 111 145677778752 1 1222334588
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCC--CCCcCCCCCCCcc
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPG--SPRVRSPSARTLE 261 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~ 261 (377)
++-+++.+++.++ ..++|+.+.+...||+.+++........ .... .....+.... .........++.+
T Consensus 163 i~EGvl~YL~~~~-v~~ll~~i~~~~~~gs~l~~d~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (260)
T TIGR00027 163 LWEGLLMYLTEEA-VDALLAFIAELSAPGSRLAFDYVRPLDG--EWRA-------GMRAPVYHAARGVDGSGLVFGIDRA 232 (260)
T ss_pred eecchhhcCCHHH-HHHHHHHHHHhCCCCcEEEEEeccccch--hHHH-------HHHHHHHHhhhcccccccccCCChh
Confidence 8889999998766 7899999999988999888865443111 1000 0001111100 1112234456789
Q ss_pred cHHhHhhcCCCcc
Q 017080 262 SIPETEDNGSEEQ 274 (377)
Q Consensus 262 ~l~~~l~~aGF~~ 274 (377)
++.++|...||..
T Consensus 233 ~~~~~l~~~Gw~~ 245 (260)
T TIGR00027 233 DVAEWLAERGWRA 245 (260)
T ss_pred hHHHHHHHCCCee
Confidence 9999999999955
No 287
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=91.53 E-value=0.56 Score=41.70 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCCEEEEECCccCccccc----CCC--ceEEEEeCCHHHHHHHHHc----------------------------------
Q 017080 122 SGSLVLDAGCGNGKYLGL----NPD--CFFVGCDISPSLIKICVDR---------------------------------- 161 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~----~~~--~~v~gvD~s~~~~~~a~~~---------------------------------- 161 (377)
.+-++-|-.||.|.++.. ++. ..|+|.|+++.+++.|++|
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 346999999999997532 333 3899999999999999976
Q ss_pred ---------------CCeEEEeeCCCCC-----CCCCceeEEEeccchhhcCChH------HHHHHHHHHHHccccCcEE
Q 017080 162 ---------------GHEVLVADAVNLP-----YRSDFGDAAISIAVLHHLSTES------RRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 162 ---------------~~~~~~~d~~~~~-----~~~~~fD~V~~~~~l~h~~~~~------~~~~~l~~~~r~LkpgG~l 215 (377)
.....+.|+.+.. ......|+|+.---..++.+.+ -...+|..++.+|-.++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 0236677777621 1123359999865555544321 1468999999999555555
Q ss_pred EEEE
Q 017080 216 LITV 219 (377)
Q Consensus 216 ~i~~ 219 (377)
.+++
T Consensus 211 ~v~~ 214 (246)
T PF11599_consen 211 AVSD 214 (246)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5543
No 288
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.37 E-value=0.82 Score=45.22 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=64.2
Q ss_pred hHHHHHHHhCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEe
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
|..+.+.....-+|.+|+=+|+|. |.... ...|++|+.+|+++.-.+.|+..+..... ..+. -...|+|+.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~--~~e~---v~~aDVVI~ 263 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMT--MEEA---VKEGDIFVT 263 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEcc--HHHH---HcCCCEEEE
Confidence 344444444445789999999998 76432 25677999999999988888877664432 2111 134699887
Q ss_pred ccchhhcCChHHHHHHHHH-HHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEE-LVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~-~~r~LkpgG~l~i~~ 219 (377)
.- .. ..++.. ..+.+|+||+++..-
T Consensus 264 at-----G~----~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 264 TT-----GN----KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CC-----CC----HHHHHHHHHhcCCCCcEEEEeC
Confidence 42 22 234554 589999999987764
No 289
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.84 E-value=1.4 Score=42.16 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=62.1
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
..+.++.+||=.|+|. |.++. ...++.|++++.++.-.+.+++.+...+. |..+. ..+.+|+++.....
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi-~~~~~--~~~~~d~~i~~~~~---- 233 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAG-GAYDT--PPEPLDAAILFAPA---- 233 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceec-ccccc--CcccceEEEECCCc----
Confidence 3567899999999864 43332 25677899999999999999988765443 21111 12457876543321
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+....+.|++||.+++.-.
T Consensus 234 -----~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 -----GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -----HHHHHHHHHhhCCCcEEEEEec
Confidence 2467888899999999987653
No 290
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.74 E-value=0.18 Score=45.20 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=65.7
Q ss_pred CCEEEEECCccCccccc-----C---C-C-c---eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCcee
Q 017080 123 GSLVLDAGCGNGKYLGL-----N---P-D-C---FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGD 181 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~~-----~---~-~-~---~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD 181 (377)
-.|++|+....|.|++. + + . . .+++||+.+.. .-.++.-+++|+.... |...+.|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----PI~GV~qlq~DIT~~stae~Ii~hfggekAd 117 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----PIEGVIQLQGDITSASTAEAIIEHFGGEKAD 117 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----ccCceEEeecccCCHhHHHHHHHHhCCCCcc
Confidence 46999999999998531 1 1 1 1 49999996642 2236777899998742 4456889
Q ss_pred EEEeccc-----hhhcCC---hHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 182 AAISIAV-----LHHLST---ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 182 ~V~~~~~-----l~h~~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+|+|-+. +|-+.. .+.+.++|.-...+|||||.++--.+-.
T Consensus 118 lVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 118 LVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred EEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 9999763 333322 1224567777889999999988776543
No 291
>PHA01634 hypothetical protein
Probab=90.50 E-value=1.1 Score=36.49 Aligned_cols=63 Identities=13% Similarity=-0.020 Sum_probs=42.4
Q ss_pred CCCEEEEECCccCccccc--CCCc-eEEEEeCCHHHHHHHHHcCCeE-EEee----CCCCCCCCCceeEEEe
Q 017080 122 SGSLVLDAGCGNGKYLGL--NPDC-FFVGCDISPSLIKICVDRGHEV-LVAD----AVNLPYRSDFGDAAIS 185 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~~--~~~~-~v~gvD~s~~~~~~a~~~~~~~-~~~d----~~~~~~~~~~fD~V~~ 185 (377)
.+.+|+|||.+-|.-+-+ ..|+ .|+++++++...+..+++ +.+ .+.| ..+++-.-+.||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een-~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEV-CAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHH-hhhheeeeceeecccccccCCCcceEEE
Confidence 578999999999986543 3444 899999999999998876 221 1112 1234433467786544
No 292
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.10 E-value=0.36 Score=47.20 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCeEEEeeCCCC--CCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 162 GHEVLVADAVNL--PYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 162 ~~~~~~~d~~~~--~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+++++.+++.+. ..+++++|.++....+.++++.+ ..+.++++.+.++|||++++-....
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~-~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQ-LNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHH-HHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 577888888773 25689999999999999999865 8999999999999999999976553
No 293
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=89.69 E-value=1.5 Score=43.43 Aligned_cols=102 Identities=24% Similarity=0.245 Sum_probs=66.8
Q ss_pred CCEEEEECCccCc--ccc--cCC--CceEEEEeCCHHHHHHHHHc--C----CeEEEee--CC--CCCCC-CCceeEEEe
Q 017080 123 GSLVLDAGCGNGK--YLG--LNP--DCFFVGCDISPSLIKICVDR--G----HEVLVAD--AV--NLPYR-SDFGDAAIS 185 (377)
Q Consensus 123 ~~~vLDiGcG~G~--~~~--~~~--~~~v~gvD~s~~~~~~a~~~--~----~~~~~~d--~~--~~~~~-~~~fD~V~~ 185 (377)
...++|+|.|.|. ++. ..+ .-.++.||.|..|....... + -..++.. +. .+|.. .+.||+|++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 4578899988776 322 123 34899999999998777654 1 1111111 11 13433 355999999
Q ss_pred ccchhhcCChHHHHHHHHHHHHc-cccCcEEEEEEcCCCc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRV-VKKGSLVLITVWAVEQ 224 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~-LkpgG~l~i~~~~~~~ 224 (377)
.+.++++.+...+..+.+++.+. .++||.+++.......
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 99999998866566666666654 5788888887655443
No 294
>PRK10742 putative methyltransferase; Provisional
Probab=89.51 E-value=1.3 Score=40.50 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=50.4
Q ss_pred CCCCCC--EEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc----------------CCeEEEeeCCCC-CCCC
Q 017080 119 SLPSGS--LVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR----------------GHEVLVADAVNL-PYRS 177 (377)
Q Consensus 119 ~~~~~~--~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~----------------~~~~~~~d~~~~-~~~~ 177 (377)
.+++|. +|||+=+|+|..+- ...|+.|+++|-++......+.. +++++.+|..++ .-..
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 456666 99999999999653 35688999999999876544332 245556666553 2123
Q ss_pred CceeEEEeccchhh
Q 017080 178 DFGDAAISIAVLHH 191 (377)
Q Consensus 178 ~~fD~V~~~~~l~h 191 (377)
.+||+|+.-=++.|
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 47999998666665
No 295
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=88.97 E-value=7.8 Score=37.91 Aligned_cols=126 Identities=17% Similarity=0.229 Sum_probs=69.7
Q ss_pred HHHHhhCcccccccccchHHHHHHHhCCCCCCEEEEECCccCc-c-------ccc---CCCceEEEEeC----CHHHHHH
Q 017080 93 RVYDAIAPHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGK-Y-------LGL---NPDCFFVGCDI----SPSLIKI 157 (377)
Q Consensus 93 ~~y~~~a~~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~-~-------~~~---~~~~~v~gvD~----s~~~~~~ 157 (377)
+.|.+..|.+.-..+.....+.+.+..- +.-+|+|+|.|.|. + +.. .|..++|||+. +...++.
T Consensus 82 ~~~~~~~P~~~fa~~taNqaIleA~~g~-~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~ 160 (374)
T PF03514_consen 82 QLFYELSPFLKFAHFTANQAILEAFEGE-RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE 160 (374)
T ss_pred HHHHHHhhHHhhhhhchhHHHHHHhccC-cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence 3344444544433344455555555533 44699999999997 2 121 35569999999 6665555
Q ss_pred HHHc--------CCeEEEe-----eCCCC-----CCCCCceeEEEeccchhhcCChH----HHHHHHHHHHHccccCcEE
Q 017080 158 CVDR--------GHEVLVA-----DAVNL-----PYRSDFGDAAISIAVLHHLSTES----RRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 158 a~~~--------~~~~~~~-----d~~~~-----~~~~~~fD~V~~~~~l~h~~~~~----~~~~~l~~~~r~LkpgG~l 215 (377)
+.++ |+.|.-. +.+++ ...++..=+|-|...+||+.+.. .+...+-...+.|+|.-.
T Consensus 161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv- 239 (374)
T PF03514_consen 161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV- 239 (374)
T ss_pred HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE-
Confidence 4443 6655322 22222 12334444555667789987321 123344455567899844
Q ss_pred EEEEc
Q 017080 216 LITVW 220 (377)
Q Consensus 216 ~i~~~ 220 (377)
++.+.
T Consensus 240 v~~E~ 244 (374)
T PF03514_consen 240 VLVEQ 244 (374)
T ss_pred EEEee
Confidence 44443
No 296
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.81 E-value=1.9 Score=41.52 Aligned_cols=90 Identities=12% Similarity=-0.011 Sum_probs=60.5
Q ss_pred CCCCCEEEEECCcc-Ccccc---cCCCceEEEEeC---CHHHHHHHHHcCCeEEEeeCCCCC----CCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDI---SPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~ 188 (377)
..++.+||=+|+|. |.++. ...+++|++++. ++.-.+.+++.+..++ +..+.. ...+.+|+|+-...
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC
Confidence 35788999999876 55432 255678999986 6888888888777653 222111 01245788777532
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
. ...+.+..+.|++||.+++.-.
T Consensus 248 -----~----~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 -----V----PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred -----C----HHHHHHHHHHccCCcEEEEEec
Confidence 2 2467888999999999877643
No 297
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=88.80 E-value=0.4 Score=43.48 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=41.7
Q ss_pred hCCCCCC--EEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHH-------c---------CCeEEEeeCCC-CCCC
Q 017080 118 NSLPSGS--LVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD-------R---------GHEVLVADAVN-LPYR 176 (377)
Q Consensus 118 ~~~~~~~--~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~-------~---------~~~~~~~d~~~-~~~~ 176 (377)
..++++. +|||.=+|-|.-+- ...|++|++++-||.+....+. . +++++.+|..+ +..+
T Consensus 69 ~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~ 148 (234)
T PF04445_consen 69 VGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP 148 (234)
T ss_dssp TT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH
T ss_pred hCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc
Confidence 3455553 89999999998431 2357899999999976543331 1 47888999887 5566
Q ss_pred CCceeEEEeccchhh
Q 017080 177 SDFGDAAISIAVLHH 191 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h 191 (377)
+++||+|+.-=++.+
T Consensus 149 ~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 149 DNSFDVVYFDPMFPE 163 (234)
T ss_dssp SS--SEEEE--S---
T ss_pred CCCCCEEEECCCCCC
Confidence 889999999777766
No 298
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=88.63 E-value=0.96 Score=43.51 Aligned_cols=90 Identities=24% Similarity=0.227 Sum_probs=64.1
Q ss_pred CCEEEEECCccCc----ccccCCCceEEEEeCCHHHHHHHHHc---C----CeEEEeeCCCCCC-CCCceeEEEeccchh
Q 017080 123 GSLVLDAGCGNGK----YLGLNPDCFFVGCDISPSLIKICVDR---G----HEVLVADAVNLPY-RSDFGDAAISIAVLH 190 (377)
Q Consensus 123 ~~~vLDiGcG~G~----~~~~~~~~~v~gvD~s~~~~~~a~~~---~----~~~~~~d~~~~~~-~~~~fD~V~~~~~l~ 190 (377)
+.+|||.=+|+|. ++...+..+|+.-|+||.+++.++.+ | ...+..|+..+-. ....||+|=. .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence 6799999999997 33334444999999999999999987 2 3334455544321 1367787643 1
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
=+-. |..++....+.++.||.+.++-
T Consensus 129 PFGS---PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGS---PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCC---CchHHHHHHHHhhcCCEEEEEe
Confidence 2233 6788999999999999999874
No 299
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=88.46 E-value=2.4 Score=40.84 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=64.9
Q ss_pred CCCCCCEEEEECCccCcc----ccc-CC---CceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCCC---------
Q 017080 119 SLPSGSLVLDAGCGNGKY----LGL-NP---DCFFVGCDISPSLIKICVDR-------GHEVLVADAVNLP--------- 174 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~----~~~-~~---~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~--------- 174 (377)
.+.||.+|||+.+..|.= ++. .. ...|++-|.++.-+...... ++.+...|+...|
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 568999999999999972 221 21 34899999998755443322 2223333333322
Q ss_pred CCCCceeEEEec------cchhhcCChHH--------------HHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 175 YRSDFGDAAISI------AVLHHLSTESR--------------RKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 175 ~~~~~fD~V~~~------~~l~h~~~~~~--------------~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.....||-|++- +++.+-++-.+ ...+|.+-.++||+||.++-++-+..
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 123468998872 12222222110 24678889999999999999986543
No 300
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.20 E-value=0.79 Score=36.47 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=57.9
Q ss_pred HHHhCCCCCCEEEEECCccCcc-ccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCC-CCceeEEEeccchh
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKY-LGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYR-SDFGDAAISIAVLH 190 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~-~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~-~~~fD~V~~~~~l~ 190 (377)
..++......+|+|||-|-=.. +.. ..|+.++++|+.+. .++ .++++++.|+.+.... -...|+|.+.
T Consensus 6 ~~iAre~~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~-~g~~~v~DDitnP~~~iY~~A~lIYSi---- 77 (129)
T COG1255 6 EYIARENARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP-EGLRFVVDDITNPNISIYEGADLIYSI---- 77 (129)
T ss_pred HHHHHHhcCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc-ccceEEEccCCCccHHHhhCccceeec----
Confidence 3343333344999998765332 221 56799999999987 444 5799999999885421 1335788774
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
..+.+....+-++.+.+ |..++|.....+
T Consensus 78 --RpppEl~~~ildva~aV--ga~l~I~pL~Ge 106 (129)
T COG1255 78 --RPPPELQSAILDVAKAV--GAPLYIKPLTGE 106 (129)
T ss_pred --CCCHHHHHHHHHHHHhh--CCCEEEEecCCC
Confidence 33111444455555544 445666655543
No 301
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.20 E-value=2.4 Score=40.65 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=58.7
Q ss_pred CCCCCEEEEECCcc-Cccc----cc-CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 120 LPSGSLVLDAGCGN-GKYL----GL-NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~----~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
+.++.+||=+|||. |.++ .. ..+.+|+++|.++.-++.++..+..... .++. ....+|+|+-.-. .-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~---~~~~-~~~g~d~viD~~G--~~- 233 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLI---DDIP-EDLAVDHAFECVG--GR- 233 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeeh---hhhh-hccCCcEEEECCC--CC-
Confidence 46789999999987 6543 22 3356899999999888888764322211 1111 1124788875332 10
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
. ....+.+..+.|++||.+++.-.
T Consensus 234 ~---~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 G---SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred c---cHHHHHHHHHhCcCCcEEEEEee
Confidence 0 13578889999999999887643
No 302
>PRK11524 putative methyltransferase; Provisional
Probab=86.43 E-value=0.62 Score=43.73 Aligned_cols=57 Identities=21% Similarity=0.179 Sum_probs=37.2
Q ss_pred CeEEEeeCCCC--CCCCCceeEEEec--cch--h--hc----CCh---HHHHHHHHHHHHccccCcEEEEEE
Q 017080 163 HEVLVADAVNL--PYRSDFGDAAISI--AVL--H--HL----STE---SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 163 ~~~~~~d~~~~--~~~~~~fD~V~~~--~~l--~--h~----~~~---~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..++.+|+.+. .+++++||+|++. +-+ . .. ... +-....+.++.++|||||.+++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 45677777763 3667889999983 211 0 00 000 003578999999999999999863
No 303
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.23 E-value=1.8 Score=45.75 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=33.0
Q ss_pred EEEeeCCC-CCCCCCceeEEEeccchhhcCChHHH-HHHHHHHHHccccCcEEEEEE
Q 017080 165 VLVADAVN-LPYRSDFGDAAISIAVLHHLSTESRR-KKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 165 ~~~~d~~~-~~~~~~~fD~V~~~~~l~h~~~~~~~-~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+..+|+.+ ++.-...||+++.-..--. .+++.| ..++++++++++|||.+.-.+
T Consensus 151 l~~gd~~~~~~~~~~~~d~~~lD~FsP~-~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 151 LWFGDANELLPQLDARADAWFLDGFAPA-KNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred EEecCHHHHHHhccccccEEEeCCCCCc-cChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 45566654 2212356899987543221 111112 589999999999999877543
No 304
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=85.80 E-value=1.3 Score=43.46 Aligned_cols=91 Identities=25% Similarity=0.207 Sum_probs=62.7
Q ss_pred CCCEEEEECCccCc----ccccCC-CceEEEEeCCHHHHHHHHHc----C-----CeEEEeeCCCCC-CCCCceeEEEec
Q 017080 122 SGSLVLDAGCGNGK----YLGLNP-DCFFVGCDISPSLIKICVDR----G-----HEVLVADAVNLP-YRSDFGDAAISI 186 (377)
Q Consensus 122 ~~~~vLDiGcG~G~----~~~~~~-~~~v~gvD~s~~~~~~a~~~----~-----~~~~~~d~~~~~-~~~~~fD~V~~~ 186 (377)
.+.+|||.=+|+|. ++.+.+ ...|+.-|+|+.+++..+.+ + +++...|+..+- .....||+|=.-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 45699999999997 333333 35899999999999999887 1 345566766532 257789998652
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-+-. +..+|..+.+.+|.||.|.++.
T Consensus 129 ----PfGS---p~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 ----PFGS---PAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----SS-----HHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CCCC---ccHhHHHHHHHhhcCCEEEEec
Confidence 2333 7789999999999999999984
No 305
>PRK13699 putative methylase; Provisional
Probab=85.71 E-value=0.62 Score=42.22 Aligned_cols=55 Identities=15% Similarity=0.337 Sum_probs=35.3
Q ss_pred eEEEeeCCCC--CCCCCceeEEEecc--ch--h-h----cC-C--hHHHHHHHHHHHHccccCcEEEEE
Q 017080 164 EVLVADAVNL--PYRSDFGDAAISIA--VL--H-H----LS-T--ESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 164 ~~~~~d~~~~--~~~~~~fD~V~~~~--~l--~-h----~~-~--~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
+++.+|..+. .++++++|+|+..= .+ . + +. + .+-....+.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4566777653 46788888888851 11 0 0 00 0 011357899999999999988764
No 306
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=85.60 E-value=5.4 Score=36.30 Aligned_cols=91 Identities=15% Similarity=0.020 Sum_probs=51.7
Q ss_pred CCCEEEEECCccCccc--c-cCCCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCC-CC-CCCCceeEEEecc--c
Q 017080 122 SGSLVLDAGCGNGKYL--G-LNPDCFFVGCDISPSLIKICVDR------GHEVLVADAVN-LP-YRSDFGDAAISIA--V 188 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~--~-~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~-~~-~~~~~fD~V~~~~--~ 188 (377)
.|++||=+|=.--.-+ . ..+..+|+.+|+++.+++..++. .++.+..|+.+ +| .-.++||++++-= +
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence 5789999984332211 1 25677999999999998776543 46677788876 33 2248999999842 2
Q ss_pred hhhcCChHHHHHHHHHHHHccccCc-EEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGS-LVLIT 218 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG-~l~i~ 218 (377)
+ +-..-++.+....||..| ..++.
T Consensus 124 ~------~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 124 P------EGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp H------HHHHHHHHHHHHTB-STT-EEEEE
T ss_pred H------HHHHHHHHHHHHHhCCCCceEEEE
Confidence 2 226788999999998766 44444
No 307
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=85.06 E-value=5 Score=36.23 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=60.3
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~~~fD~V~~~~ 187 (377)
.+.++.+||-.|+|. |..+. ...+.+|++++.++...+.++..+..... +..... ...+.+|+++...
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVI-DYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceec-cCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 346789999999986 44332 25568999999999888887665432221 221111 1245689988643
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
. . ...+..+.+.|+++|.++....
T Consensus 210 ~-----~----~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 210 G-----G----PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred C-----C----HHHHHHHHHhcccCCEEEEEcc
Confidence 2 2 1456777888999999887643
No 308
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=84.99 E-value=10 Score=33.37 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=71.1
Q ss_pred HHhCCCCCCEEEEECCccCcccc--------cCCCceEEEEeCCHHHHHHHH--HcCCeEEEeeCCCCC-------CCCC
Q 017080 116 FLNSLPSGSLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICV--DRGHEVLVADAVNLP-------YRSD 178 (377)
Q Consensus 116 ~l~~~~~~~~vLDiGcG~G~~~~--------~~~~~~v~gvD~s~~~~~~a~--~~~~~~~~~d~~~~~-------~~~~ 178 (377)
++-.+. +..|+|+|.-.|.-+- .....+|+++|++-....-+. ..++.|+.++-.++. ...+
T Consensus 64 llw~~~-P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 64 LLWELQ-PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred HHHhcC-CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 333444 4689999998887331 134479999999877643332 347899999876642 1223
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCC
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVE 223 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~ 223 (377)
.--+.+|...-||+.. ..+.|+-+.++|.-|-++++.+-+.+
T Consensus 143 y~kIfvilDsdHs~~h---vLAel~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 143 YPKIFVILDSDHSMEH---VLAELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred CCcEEEEecCCchHHH---HHHHHHHhhhHhhcCceEEEeccccc
Confidence 3345666667777766 67888888999999999998876554
No 309
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=84.78 E-value=4.7 Score=38.85 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=60.2
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.++.+||=.|+|. |.++. ...++ .|+++|.++...+.+++.+..... +..+.. .....+|+|+-
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~i~~~~~~~g~d~vid 251 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTV-NSSGTDPVEAIRALTGGFGADVVID 251 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEE-cCCCcCHHHHHHHHhCCCCCCEEEE
Confidence 567889999999865 44432 24566 599999999999999877654332 221110 11235888875
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.- .. ...+....+.+++||.+++.-
T Consensus 252 ~~-----g~----~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 252 AV-----GR----PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CC-----CC----HHHHHHHHHHhccCCEEEEEC
Confidence 32 22 245677788999999988764
No 310
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=84.56 E-value=1.9 Score=40.81 Aligned_cols=52 Identities=23% Similarity=0.331 Sum_probs=35.7
Q ss_pred chHHHHHHHhCCCCCCEEEEECCccCccc----ccCCCceEEEEeCCHHHHHHHHHc
Q 017080 109 KWPKVATFLNSLPSGSLVLDAGCGNGKYL----GLNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 109 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~----~~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
...++...+. ..++...+|.=-|.|..+ ...+++.++|+|.++.+++.++++
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~ 63 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKER 63 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCC
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHH
Confidence 3456666665 456679999988998864 346779999999999999999876
No 311
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.52 E-value=1.3 Score=41.67 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=65.5
Q ss_pred CEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 124 SLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
.+|.=||.|. |..+. ...++.|+-+|+|..-++..... ++...-.+..++...-.+.|++|..-.+.--..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka-- 246 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA-- 246 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC--
Confidence 4778888887 55543 26788999999999887776654 244444444444333357899998766665555
Q ss_pred HHHHHHHHHHHccccCcEEEEE
Q 017080 197 RRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 197 ~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
|.-+.+++...+|||+.++=.
T Consensus 247 -PkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 247 -PKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred -ceehhHHHHHhcCCCcEEEEE
Confidence 788999999999999876544
No 312
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.22 E-value=3.8 Score=36.99 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=51.9
Q ss_pred chHHHHHHHhC----C-CCCCEEEEECCccCccc---c-cCCCceEEEEeCCHHHHHHHHHc---C------CeEEE-ee
Q 017080 109 KWPKVATFLNS----L-PSGSLVLDAGCGNGKYL---G-LNPDCFFVGCDISPSLIKICVDR---G------HEVLV-AD 169 (377)
Q Consensus 109 ~~~~~~~~l~~----~-~~~~~vLDiGcG~G~~~---~-~~~~~~v~gvD~s~~~~~~a~~~---~------~~~~~-~d 169 (377)
....+.++|.. + .+..++||||.|.-=.- . ...+.+.+|.|+++..++.|+.. | ++... -|
T Consensus 60 Yih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~ 139 (292)
T COG3129 60 YIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKD 139 (292)
T ss_pred HHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccC
Confidence 33445555542 2 24568999998864321 1 24577999999999999988865 1 33322 12
Q ss_pred CCC-CC---CCCCceeEEEeccchhh
Q 017080 170 AVN-LP---YRSDFGDAAISIAVLHH 191 (377)
Q Consensus 170 ~~~-~~---~~~~~fD~V~~~~~l~h 191 (377)
-.. ++ -..+.||+++|+=-+|-
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred ccccccccccccceeeeEecCCCcch
Confidence 111 11 12578999999988773
No 313
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.05 E-value=4.3 Score=39.40 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=60.3
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeC-CCC-----CCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADA-VNL-----PYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~-----~~~~~~fD~V~~~~ 187 (377)
.+.++.+||=.|+|. |.++. ...++ .|+++|.++...+.+++.+........ .++ ....+.+|+|+-.-
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 467788999999865 44432 25577 699999999999999887654332111 111 01123588887532
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...+....+.|+++|.+++.-
T Consensus 268 -----G~----~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 268 -----GS----VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred -----CC----hHHHHHHHHHHhcCCEEEEEc
Confidence 12 246777888999999988764
No 314
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=83.98 E-value=2 Score=34.64 Aligned_cols=73 Identities=11% Similarity=0.147 Sum_probs=53.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-------C-CCCCceeEEEeccchhhcCChHHHHHHHHHHHHcccc
Q 017080 140 NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-------P-YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK 211 (377)
Q Consensus 140 ~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-------~-~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~Lkp 211 (377)
..+++|+++|.++.-.+.+++.+...+. |..+. . .+...+|+|+-.-. . ...++....+|+|
T Consensus 12 ~~G~~vi~~~~~~~k~~~~~~~Ga~~~~-~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~----~~~~~~~~~~l~~ 81 (130)
T PF00107_consen 12 AMGAKVIATDRSEEKLELAKELGADHVI-DYSDDDFVEQIRELTGGRGVDVVIDCVG-----S----GDTLQEAIKLLRP 81 (130)
T ss_dssp HTTSEEEEEESSHHHHHHHHHTTESEEE-ETTTSSHHHHHHHHTTTSSEEEEEESSS-----S----HHHHHHHHHHEEE
T ss_pred HcCCEEEEEECCHHHHHHHHhhcccccc-cccccccccccccccccccceEEEEecC-----c----HHHHHHHHHHhcc
Confidence 3448999999999999999998754443 23222 1 23357999887532 2 4688999999999
Q ss_pred CcEEEEEEcCC
Q 017080 212 GSLVLITVWAV 222 (377)
Q Consensus 212 gG~l~i~~~~~ 222 (377)
+|.+++.-...
T Consensus 82 ~G~~v~vg~~~ 92 (130)
T PF00107_consen 82 GGRIVVVGVYG 92 (130)
T ss_dssp EEEEEEESSTS
T ss_pred CCEEEEEEccC
Confidence 99999986554
No 315
>PLN02494 adenosylhomocysteinase
Probab=83.75 E-value=2.3 Score=42.66 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=62.2
Q ss_pred hHHHHHHHhCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEe
Q 017080 110 WPKVATFLNSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAIS 185 (377)
Q Consensus 110 ~~~~~~~l~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~ 185 (377)
+..+.+.....-.|++|+=+|+|. |.... ...+++|+++|.++.....+...+..+. ++++. -...|+|++
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv--~leEa---l~~ADVVI~ 315 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL--TLEDV---VSEADIFVT 315 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec--cHHHH---HhhCCEEEE
Confidence 444444444445689999999998 66432 2457799999999876556655555432 22221 134699887
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.-. + ...+..+....+||||+++..-.
T Consensus 316 tTG-----t---~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 316 TTG-----N---KDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCC-----C---ccchHHHHHhcCCCCCEEEEcCC
Confidence 322 1 22234778889999999887743
No 316
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=83.68 E-value=3.3 Score=38.46 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~------~~~~~fD~V~~~~~l 189 (377)
.++.+||=+|+|. |.++. ...++. |+++|.++.-.+.+++.+...... ..... .....+|+|+-..
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~vid~~-- 195 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDVALEFS-- 195 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCEEEECC--
Confidence 4788999999875 54432 245665 999999999999988876543321 11110 1123578876632
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...++.+.+.|+|+|.+++.-
T Consensus 196 ---G~----~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 196 ---GA----TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred ---CC----hHHHHHHHHHhcCCCEEEEec
Confidence 12 356788899999999988765
No 317
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=83.65 E-value=1.4 Score=41.58 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=65.8
Q ss_pred CEEEEECCccCc-c------c----cc----C---------CCceEEEEeCCHHHH--HHHHH-----------------
Q 017080 124 SLVLDAGCGNGK-Y------L----GL----N---------PDCFFVGCDISPSLI--KICVD----------------- 160 (377)
Q Consensus 124 ~~vLDiGcG~G~-~------~----~~----~---------~~~~v~gvD~s~~~~--~~a~~----------------- 160 (377)
.+||-||.|.|. + . .. . +...++.||+.+..- .....
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999976 1 1 00 1 225899999987432 11110
Q ss_pred -c------CCeEEEeeCCCCCCCC-------CceeEEEeccchhhcC--ChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 161 -R------GHEVLVADAVNLPYRS-------DFGDAAISIAVLHHLS--TESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 161 -~------~~~~~~~d~~~~~~~~-------~~fD~V~~~~~l~h~~--~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
. ++.|.+.|+..+..++ ...|+|...+++.-+- ...+-.++|..+...++||-.++|.+-.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 0 4788899998765322 2468888877775431 1122578999999999999999998754
No 318
>PTZ00357 methyltransferase; Provisional
Probab=83.48 E-value=2.2 Score=44.35 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=63.7
Q ss_pred CEEEEECCccCcccc--------cCCCceEEEEeCCHHHHHHHHH---c-----C--------CeEEEeeCCCCCCCC--
Q 017080 124 SLVLDAGCGNGKYLG--------LNPDCFFVGCDISPSLIKICVD---R-----G--------HEVLVADAVNLPYRS-- 177 (377)
Q Consensus 124 ~~vLDiGcG~G~~~~--------~~~~~~v~gvD~s~~~~~~a~~---~-----~--------~~~~~~d~~~~~~~~-- 177 (377)
..|+=+|+|-|-+.. .....+|++|+-++........ + + |+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 368999999998642 1345699999999653222211 1 1 688999999875332
Q ss_pred ---------CceeEEEeccchhhcCChHHHHHHHHHHHHcccc----CcE
Q 017080 178 ---------DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKK----GSL 214 (377)
Q Consensus 178 ---------~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~Lkp----gG~ 214 (377)
+++|+||+ ..|..+-|.|.-++.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36899887 5566676766567899999999987 776
No 319
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=83.25 E-value=1.2 Score=40.90 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=42.6
Q ss_pred CCEEEEECCccCcccc-------c-----CCCceEEEEeCCHHHHHHHHHc--C---------CeEE-EeeCCCCCCCCC
Q 017080 123 GSLVLDAGCGNGKYLG-------L-----NPDCFFVGCDISPSLIKICVDR--G---------HEVL-VADAVNLPYRSD 178 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~~-------~-----~~~~~v~gvD~s~~~~~~a~~~--~---------~~~~-~~d~~~~~~~~~ 178 (377)
.-+|+|+|.|+|.++. . +...+++-||+||.+.+.-+++ + .++. ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~~~l~~~p---- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWLDDLEEVP---- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEESSGGCS-----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchhhhhhccc----
Confidence 3699999999999742 1 2346999999999998877766 1 1111 12222222
Q ss_pred ceeEEEeccchhhcCC
Q 017080 179 FGDAAISIAVLHHLST 194 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~ 194 (377)
..-+|+++.++..+|-
T Consensus 95 ~~~~iiaNE~~DAlP~ 110 (252)
T PF02636_consen 95 FPGFIIANELFDALPV 110 (252)
T ss_dssp CCEEEEEESSGGGS--
T ss_pred CCEEEEEeeehhcCce
Confidence 4468899999998875
No 320
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.90 E-value=6.4 Score=30.98 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=53.3
Q ss_pred CCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 141 PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 141 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
.+..|+.+|.++..++.+++.++.++.+|..+.. ..-...|.|++.. ++++ ....+....+-+.|...++
T Consensus 20 ~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~d~-~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 20 GGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT-----DDDE-ENLLIALLARELNPDIRII 93 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES-----SSHH-HHHHHHHHHHHHTTTSEEE
T ss_pred CCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc-----CCHH-HHHHHHHHHHHHCCCCeEE
Confidence 4458999999999999999999999999998742 2235678777743 2433 4556666777778888877
Q ss_pred EEEc
Q 017080 217 ITVW 220 (377)
Q Consensus 217 i~~~ 220 (377)
....
T Consensus 94 ~~~~ 97 (116)
T PF02254_consen 94 ARVN 97 (116)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7653
No 321
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=82.22 E-value=4.3 Score=40.09 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=56.4
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
..|.+|+=+|+|. |.... ...+++|+++|.++.....+...+..+. +.++. -...|+|++.- ..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~--~leea---l~~aDVVItaT-----G~-- 260 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM--TMEEA---AKIGDIFITAT-----GN-- 260 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC--CHHHH---HhcCCEEEECC-----CC--
Confidence 5789999999998 66432 2567899999999876666655554332 22221 13459987742 12
Q ss_pred HHHHHHH-HHHHccccCcEEEEEE
Q 017080 197 RRKKAIE-ELVRVVKKGSLVLITV 219 (377)
Q Consensus 197 ~~~~~l~-~~~r~LkpgG~l~i~~ 219 (377)
..++. +....+|+|++++..-
T Consensus 261 --~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 261 --KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred --HHHHHHHHHhcCCCCcEEEEEC
Confidence 34454 4888999999887764
No 322
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=80.81 E-value=2.7 Score=39.28 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=48.1
Q ss_pred EEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCC--CCceeEEEeccchh
Q 017080 125 LVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVNLPYR--SDFGDAAISIAVLH 190 (377)
Q Consensus 125 ~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~--~~~fD~V~~~~~l~ 190 (377)
+|+|+-||.|.+.. ...+. .+.++|+++.+++..+.+ .-.++.+|+.++... ...+|+++..-...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCCh
Confidence 69999999998742 23345 577899999999988887 233577888876532 35799999865444
No 323
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.70 E-value=8.2 Score=36.43 Aligned_cols=93 Identities=17% Similarity=0.137 Sum_probs=61.0
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~------~~~~~fD~V~~~ 186 (377)
..+.++.+||-+|+|. |..+. ...+.. ++.++.++...+.+++.++...... .+.. ...+.+|+++..
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDP-SREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecC-CCCCHHHHHHhcCCCCcEEEEC
Confidence 4567888999998653 44331 245665 8999999999888877666433222 2111 134568999864
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.. . ...+.++.+.|+++|.++....
T Consensus 234 ~~-----~----~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 234 TG-----V----PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CC-----C----hHHHHHHHHHHhcCCEEEEEec
Confidence 21 1 2567788899999999877643
No 324
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=80.45 E-value=2.5 Score=40.86 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=33.2
Q ss_pred HhCCCCCCEEEEECCccCcccc---cCCCceEEEEeCCHHHHHHHHH
Q 017080 117 LNSLPSGSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLIKICVD 160 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~~~a~~ 160 (377)
+....+-..|+|+|.|.|.+++ ...+..|.+||-|....+.|+.
T Consensus 148 i~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 148 ISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3333445689999999999765 4778899999999776665553
No 325
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=80.29 E-value=7.7 Score=36.86 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=60.1
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCCC-----C-C-CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVN-----L-P-YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~~-----~-~-~~~~~fD~V~~~ 186 (377)
.+.++.+||=+|+|. |.++. ...+++ |++++.++...+.+++.+...+. |..+ + . .....+|+|+-.
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i-~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVI-NSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-cCCcchHHHHHHHhCCCCCCEEEEC
Confidence 456788999998864 44332 255676 99999999999988877654332 1111 1 0 112368988754
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
. .. ...+....+.|+++|.+++.-.
T Consensus 239 ~-----g~----~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 239 S-----GN----TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred C-----CC----HHHHHHHHHHhhcCCEEEEEcC
Confidence 2 22 2456777889999999887643
No 326
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=80.14 E-value=11 Score=35.56 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=59.9
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CC-CCCCceeEEEeccchhhc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP-YRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~~-~~~~~fD~V~~~~~l~h~ 192 (377)
.+.++.+||-+|+|. |..+. ...+.+|++++.++...+.+++.+......+... .. -..+.+|+++...
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~----- 233 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV----- 233 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC-----
Confidence 567788999999873 55432 2567799999999999888866554333222111 10 0124588887642
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...+..+.+.|+++|.++...
T Consensus 234 ~~----~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 VS----GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred Cc----HHHHHHHHHhcccCCEEEEEC
Confidence 11 246777889999999888764
No 327
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=80.07 E-value=4.5 Score=38.16 Aligned_cols=85 Identities=18% Similarity=0.088 Sum_probs=54.7
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
.++.+||=+|||. |.++. ...+++ |+++|.++..++.+.... ..|.... ..+.+|+|+-.-. .
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----~i~~~~~--~~~g~Dvvid~~G-----~- 210 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----VLDPEKD--PRRDYRAIYDASG-----D- 210 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----ccChhhc--cCCCCCEEEECCC-----C-
Confidence 3567899999876 66532 245664 777899988877776431 1121111 1346888876522 2
Q ss_pred HHHHHHHHHHHHccccCcEEEEEEc
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+..+.+.|+|||.+++.-.
T Consensus 211 ---~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 211 ---PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ---HHHHHHHHHhhhcCcEEEEEee
Confidence 3467888899999999987643
No 328
>PLN02827 Alcohol dehydrogenase-like
Probab=79.75 E-value=7 Score=38.10 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=60.0
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCC----CC-----CCCCceeEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----LP-----YRSDFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~----~~-----~~~~~fD~V 183 (377)
..+.++.+||=.|+|. |.++. ...++ .|+++|.++...+.+++.+..... +..+ +. ...+.+|+|
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i-~~~~~~~~~~~~v~~~~~~g~d~v 267 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFI-NPNDLSEPIQQVIKRMTGGGADYS 267 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEE-cccccchHHHHHHHHHhCCCCCEE
Confidence 3567899999999865 54432 24566 689999999999999877764332 2211 00 112358888
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccC-cEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~ 219 (377)
+-.- .. ...+....+.|++| |.+++.-
T Consensus 268 id~~-----G~----~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 268 FECV-----GD----TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred EECC-----CC----hHHHHHHHHhhccCCCEEEEEC
Confidence 7642 22 24577788889998 9987653
No 329
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=79.44 E-value=13 Score=35.10 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=60.6
Q ss_pred hCCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC--CC-----CCCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV--NL-----PYRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~--~~-----~~~~~~fD~V~~ 185 (377)
..+.+|.+||=.|.+ .|.++. ...+++|++++.++...+.+++.+.......-. .+ ....+.+|+|+-
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d 213 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFD 213 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEE
Confidence 356788999999853 355432 256789999999999999988776644322111 11 011346888876
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. .. ..+....+.|++||.++..-
T Consensus 214 ~~-----G~-----~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 214 NV-----GG-----EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CC-----CH-----HHHHHHHHHhCcCcEEEEec
Confidence 32 22 24577889999999998753
No 330
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=78.62 E-value=2.7 Score=37.29 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=30.8
Q ss_pred CCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHH
Q 017080 121 PSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVD 160 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~ 160 (377)
.+|..|||.=||+|..+. ...+-+.+|+|+++...+.|.+
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 678999999999999653 4677789999999999998864
No 331
>PLN02740 Alcohol dehydrogenase-like
Probab=78.59 E-value=11 Score=36.72 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=60.4
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCC----C-----CCCCCceeEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----L-----PYRSDFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~----~-----~~~~~~fD~V 183 (377)
..+.+|.+||=+|+|. |.++. ...++ .|+++|.++..++.+++.+..... |..+ + ....+.+|+|
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~~~~~~~~v~~~~~~g~dvv 272 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFI-NPKDSDKPVHERIREMTGGGVDYS 272 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEE-ecccccchHHHHHHHHhCCCCCEE
Confidence 4567899999999875 54432 25566 699999999999999887654322 2211 1 0112358888
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccC-cEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~ 219 (377)
+-... . ...+......+++| |.+++.-
T Consensus 273 id~~G-----~----~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 273 FECAG-----N----VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred EECCC-----C----hHHHHHHHHhhhcCCCEEEEEc
Confidence 76432 2 25677777888887 8877654
No 332
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=78.56 E-value=16 Score=35.09 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=60.2
Q ss_pred hCCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHH-HcCCeEEEeeCC--CC-----CCCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICV-DRGHEVLVADAV--NL-----PYRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~d~~--~~-----~~~~~~fD~V~ 184 (377)
..+.+|.+||=.|++ .|.++. ...+++|++++.++...+.++ +.+.......-. ++ ....+.+|+|+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEE
Confidence 346788999999983 355542 356789999999999888887 455543332111 11 01124588887
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-... . ..+....+.|++||.+++.-
T Consensus 234 d~vG-----~-----~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 234 DNVG-----G-----DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred ECCC-----H-----HHHHHHHHHhccCCEEEEEC
Confidence 6421 1 35677889999999988753
No 333
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=78.42 E-value=12 Score=35.47 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=57.5
Q ss_pred CCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCC-----CCCCCCCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV-----NLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~-----~~~~~~~~fD~V~~~~~l~h 191 (377)
++.+||-.|+|. |..+. ...+. .+++++.++...+.+++.+...+. |.. .+....+.+|+++.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~~vd~vld~~g~-- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETV-NLARDPLAAYAADKGDFDVVFEASGA-- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEE-cCCchhhhhhhccCCCccEEEECCCC--
Confidence 788999988765 44432 24566 799999999988877766543222 222 111112348998865321
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...++++.+.|+++|.++...
T Consensus 242 -------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 -------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -------HHHHHHHHHHHhcCCEEEEEe
Confidence 245778889999999988654
No 334
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=78.35 E-value=11 Score=35.97 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=58.2
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCcee-EEEe
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGD-AAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~~~fD-~V~~ 185 (377)
.+.++.+||=.|+|. |.++. ...++. |++++.++.-.+.+++.+..... |..+.. .....+| +|+-
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~~~~~~~~~~d~~v~d 235 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTF-NSREMSAPQIQSVLRELRFDQLILE 235 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEe-cCcccCHHHHHHHhcCCCCCeEEEE
Confidence 456788999999866 44432 245665 78999999999888776653322 111110 1223566 5543
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ... ...+.+..+.|++||.+++.-
T Consensus 236 ~-----~G~----~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 236 T-----AGV----PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred C-----CCC----HHHHHHHHHHhhcCCEEEEEc
Confidence 2 222 357788889999999988764
No 335
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=78.29 E-value=7.8 Score=38.54 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=56.3
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
-.|.+|+=+|+|. |.... ...+++|+.+|+++.....+...+..+. ++.+. -...|+|+..- .+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~--~l~ea---l~~aDVVI~aT-----G~-- 277 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM--TMEEA---AELGDIFVTAT-----GN-- 277 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec--CHHHH---HhCCCEEEECC-----CC--
Confidence 3788999999998 65432 2567799999999877665555444422 22221 13579988742 22
Q ss_pred HHHHHHH-HHHHccccCcEEEEEE
Q 017080 197 RRKKAIE-ELVRVVKKGSLVLITV 219 (377)
Q Consensus 197 ~~~~~l~-~~~r~LkpgG~l~i~~ 219 (377)
..++. +....+|+|++++..-
T Consensus 278 --~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 278 --KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred --HHHHHHHHHhcCCCCCEEEEcC
Confidence 24554 6888999999877653
No 336
>PRK11524 putative methyltransferase; Provisional
Probab=77.73 E-value=3.5 Score=38.67 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=36.2
Q ss_pred CCCCEEEEECCccCccc--ccCCCceEEEEeCCHHHHHHHHHc
Q 017080 121 PSGSLVLDAGCGNGKYL--GLNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~--~~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
.+|..|||-=||+|..+ ....+-+.+|+|+++.-++.|+++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence 67899999999999964 446788999999999999999988
No 337
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=77.09 E-value=15 Score=34.50 Aligned_cols=90 Identities=21% Similarity=0.179 Sum_probs=59.7
Q ss_pred hCCCCCCEEEEECCcc-Cccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcC
Q 017080 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
..+.++.+||=.|+|. |..+ ....+.+++.++.++...+.+++.++.... +.... +.+.+|+++... .
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~--~~~~vD~vi~~~-----~ 234 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAG-DSDDL--PPEPLDAAIIFA-----P 234 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEe-ccCcc--CCCcccEEEEcC-----C
Confidence 4567788888888764 3332 125678999999999888888766654322 11221 245688876532 1
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ...+.++.+.|+++|.+++..
T Consensus 235 ~----~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 V----GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred c----HHHHHHHHHHhhcCCEEEEEc
Confidence 1 246888999999999988654
No 338
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=76.72 E-value=4.2 Score=40.61 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=59.3
Q ss_pred CCCEEEEECCcc-Cccccc---CCCceEE------EEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGN-GKYLGL---NPDCFFV------GCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~---~~~~~v~------gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
.+++|+=||||. |..... ..|.+|+ ++|..+...+.|.+.+..+ .+..+. -...|+|++.
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v--~~~~Ea---~~~ADvVviL----- 104 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV--GTYEEL---IPQADLVINL----- 104 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc--CCHHHH---HHhCCEEEEc-----
Confidence 578999999998 764322 3455666 5666677777777665532 232221 2456888885
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+||.. ...+.+++...||||..|.++.
T Consensus 105 lPDt~-q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 105 TPDKQ-HSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred CChHH-HHHHHHHHHhhCCCCCEEEecC
Confidence 55554 4567799999999999999873
No 339
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=76.71 E-value=9.9 Score=34.79 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=57.8
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcC-CeEEEeeCCCCCCCCCceeEEEeccchhh
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRG-HEVLVADAVNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~-~~~~~~d~~~~~~~~~~fD~V~~~~~l~h 191 (377)
..+.++.+||=.|+|. |..+. ...+.. |++++.++...+.+++.+ ..-.. +..........+|+|+....
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~d~vl~~~~--- 168 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVA-ADTADEIGGRGADVVIEASG--- 168 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCcccc-ccchhhhcCCCCCEEEEccC---
Confidence 3567888999998765 44331 245566 999999999888877765 11110 11100112346888876421
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ...+.+..+.|+++|.++...
T Consensus 169 --~----~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 --S----PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred --C----hHHHHHHHHHhcCCcEEEEEe
Confidence 1 246777888999999987653
No 340
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=76.50 E-value=14 Score=35.50 Aligned_cols=92 Identities=17% Similarity=0.308 Sum_probs=58.8
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----------C-CCCcee-
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----------Y-RSDFGD- 181 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----------~-~~~~fD- 181 (377)
..+.++.+||=.|+|. |..+. ...+++|+++|.++..++.+++.+..... +..+.+ + ....+|
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i-~~~~~~~~~~~~~~~~~t~~~g~d~ 240 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTL-NPKDKSAREVKKLIKAFAKARGLRS 240 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEe-cCccccHHHHHHHHHhhcccCCCCC
Confidence 3467889999999966 55432 24567899999999999999877654332 111110 0 112344
Q ss_pred ---EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 182 ---AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 182 ---~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|+ ..... ...+....+.|++||.+++.-
T Consensus 241 ~~d~v~-----d~~g~----~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 241 TGWKIF-----ECSGS----KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CcCEEE-----ECCCC----hHHHHHHHHHHhcCCeEEEEC
Confidence 443 22222 346777888999999998764
No 341
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=76.00 E-value=3.5 Score=39.67 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.7
Q ss_pred CCCCEEEEECCccCcccc--------cCC----CceEEEEeCCHHHHHHHHHc
Q 017080 121 PSGSLVLDAGCGNGKYLG--------LNP----DCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~~~--------~~~----~~~v~gvD~s~~~~~~a~~~ 161 (377)
+....++|+|.|+|.++. ..| ..++.-|++|+...+.-+++
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 345689999999999742 233 56999999999988776655
No 342
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=75.50 E-value=7.2 Score=38.54 Aligned_cols=75 Identities=13% Similarity=0.214 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHhhCcccccccccchH-HHHHHHhCCC----C-CCEEEEECCccCcccc---cCCCceEEEEeCCHHHH
Q 017080 85 ELEKKYVHRVYDAIAPHFSSTRFAKWP-KVATFLNSLP----S-GSLVLDAGCGNGKYLG---LNPDCFFVGCDISPSLI 155 (377)
Q Consensus 85 ~~~~~~~~~~y~~~a~~y~~~~~~~~~-~~~~~l~~~~----~-~~~vLDiGcG~G~~~~---~~~~~~v~gvD~s~~~~ 155 (377)
+++++.....|-..-..++ |...++ .+...+...+ . ...|||||+|||.++- ....-.|++++.-..|.
T Consensus 25 d~~qelArSsy~DMl~D~d--RNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~ 102 (636)
T KOG1501|consen 25 DTDQELARSSYLDMLNDSD--RNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV 102 (636)
T ss_pred chHHHHHHhhHHHHhhccc--ccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHH
Confidence 5666666666655544444 222221 2333333211 1 2479999999999752 22334799999999999
Q ss_pred HHHHHc
Q 017080 156 KICVDR 161 (377)
Q Consensus 156 ~~a~~~ 161 (377)
+.|++-
T Consensus 103 d~arkI 108 (636)
T KOG1501|consen 103 DLARKI 108 (636)
T ss_pred HHHHHH
Confidence 988864
No 343
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=74.19 E-value=18 Score=38.06 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=64.7
Q ss_pred CEEEEECCcc-Cccccc---CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCceeEEEeccchhhcCCh
Q 017080 124 SLVLDAGCGN-GKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~~~ 195 (377)
.+|+=+|+|. |..... ..+..++.+|.+++.++.+++.+..++.+|+.+.. ..-+..|++++. ++|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~-----~~d~ 475 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINA-----IDDP 475 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEE-----eCCH
Confidence 5899999998 765422 45779999999999999999889999999998853 122467777764 3443
Q ss_pred HHHHHHHHHHHHccccCcEEEEEE
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+ ....+-...|.+.|.-.++...
T Consensus 476 ~-~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 476 Q-TSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred H-HHHHHHHHHHHhCCCCeEEEEE
Confidence 3 3455555666677877666554
No 344
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=74.05 E-value=16 Score=35.34 Aligned_cols=93 Identities=16% Similarity=0.180 Sum_probs=60.6
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCC--CC-------CCCCceeEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN--LP-------YRSDFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~--~~-------~~~~~fD~V 183 (377)
..+.++.+||=.|+|. |.++. ...++ +|+++|.++...+.+++.+..... |..+ .+ ...+.+|+|
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i-~~~~~~~~~~~~v~~~~~~g~d~v 259 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCV-NPNDYDKPIQEVIVEITDGGVDYS 259 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEE-cccccchhHHHHHHHHhCCCCCEE
Confidence 3567889999999875 54432 25566 799999999999999887654332 1111 00 112357877
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccC-cEEEEEEc
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 220 (377)
+-.- .. ...+.+..+.+++| |.+++.-.
T Consensus 260 id~~-----G~----~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 260 FECI-----GN----VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EECC-----CC----HHHHHHHHHHhhcCCCeEEEEec
Confidence 6642 22 24677788889886 98877643
No 345
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=73.97 E-value=0.83 Score=37.23 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=28.6
Q ss_pred EEEeeCCC-CCCCCCceeEEEeccchhhcCChHH-HHHHHHHHHHccccCcEEEEE
Q 017080 165 VLVADAVN-LPYRSDFGDAAISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 165 ~~~~d~~~-~~~~~~~fD~V~~~~~l~h~~~~~~-~~~~l~~~~r~LkpgG~l~i~ 218 (377)
+..+|+.+ ++--...||+|+.-..-. -.+++. -..+++++++.++|||.+.-.
T Consensus 35 L~~gDa~~~l~~l~~~~Da~ylDgFsP-~~nPelWs~e~~~~l~~~~~~~~~l~Ty 89 (124)
T PF05430_consen 35 LWFGDAREMLPQLDARFDAWYLDGFSP-AKNPELWSEELFKKLARLSKPGGTLATY 89 (124)
T ss_dssp EEES-HHHHHHHB-T-EEEEEE-SS-T-TTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred EEEcHHHHHHHhCcccCCEEEecCCCC-cCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence 45556543 221136788887754221 111110 158999999999999876543
No 346
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=73.31 E-value=18 Score=33.94 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=59.9
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
.+.++.+||=.|+|. |..+. ...+.++++++.++...+.+++.+..... +.... ...+.+|+++... ..
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~-~~~~~-~~~~~~d~vid~~-----g~ 224 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVL-PDEAE-SEGGGFDVVVEAT-----GS 224 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEe-Ccccc-ccCCCCCEEEECC-----CC
Confidence 467788999998653 33321 25677899999999999998876654322 12111 2345689888742 11
Q ss_pred hHHHHHHHHHHHHccccCcEEEEE
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
...+..+.+.|+++|.+++.
T Consensus 225 ----~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 225 ----PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ----hHHHHHHHHHhhcCCEEEEE
Confidence 24677788889999998873
No 347
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=72.90 E-value=1 Score=37.64 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=42.3
Q ss_pred CEEEEECCccCcc---cc-cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC-CC---CCCCceeEEEeccchhhcCCh
Q 017080 124 SLVLDAGCGNGKY---LG-LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN-LP---YRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 124 ~~vLDiGcG~G~~---~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~~---~~~~~fD~V~~~~~l~h~~~~ 195 (377)
.-|||+|=|+|+. ++ ..|+.+|+.+|-.-..-..+.+-.-.++.+|+.+ ++ ......-++++-...++-..+
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~d 109 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHADIGTGDKEKD 109 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHHH
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEeecCCCCcchh
Confidence 4799999999994 33 4899999999964332222222224577787765 22 112334455544333321111
Q ss_pred HHHHHHH-HHHHHccccCcEEEEE
Q 017080 196 SRRKKAI-EELVRVVKKGSLVLIT 218 (377)
Q Consensus 196 ~~~~~~l-~~~~r~LkpgG~l~i~ 218 (377)
....+.| .-+..+|.|||.++-.
T Consensus 110 ~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 110 DATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEES
T ss_pred HHHHHhhhHHHHHHhcCCcEEEeC
Confidence 0011222 2355788999986654
No 348
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=72.19 E-value=27 Score=34.24 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=62.6
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCC-CCC------CCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAV-NLP------YRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~~------~~~~~fD~V~~ 185 (377)
..+.++.+||=.|+|. |.++. ...++. ++.+|.++.-++.+++.+...+...-. ++. .....+|+|+-
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid 260 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVD 260 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEE
Confidence 3467788888888875 55432 244554 667799998999999887753321111 110 12245898876
Q ss_pred ccchhhcC-----ChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 186 IAVLHHLS-----TESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 186 ~~~l~h~~-----~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.-.-.... ...+....+++..+.+++||.+++.-.
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 261 CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 43321000 000023588999999999999988654
No 349
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=71.27 E-value=21 Score=37.29 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=64.8
Q ss_pred CEEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCceeEEEeccchhhcCCh
Q 017080 124 SLVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~~~ 195 (377)
.+|+=+|+|. |.... . ..+.+++.+|.+++.++.+++.+..++.+|+.+.. ..-+..|.+++. ++|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~-----~~d~ 475 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVIT-----CNEP 475 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEE-----eCCH
Confidence 4788888887 65432 2 56779999999999999999989999999998743 122456776664 4443
Q ss_pred HHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+ ....+-...|.+.|...++....+
T Consensus 476 ~-~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 476 E-DTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEeCC
Confidence 3 334455556677888887776543
No 350
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=70.81 E-value=14 Score=35.62 Aligned_cols=91 Identities=14% Similarity=0.048 Sum_probs=54.8
Q ss_pred CCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHH-HHHHHcCCeEEEeeCC--CCCCCCCceeEEEeccchhhc
Q 017080 120 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLI-KICVDRGHEVLVADAV--NLPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~d~~--~~~~~~~~fD~V~~~~~l~h~ 192 (377)
+.++.+||=.|+|. |.++. ...++++++++.++... +.+++.+.......-. .+....+.+|+|+-..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~----- 255 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV----- 255 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC-----
Confidence 45788999999875 55432 25677888888877654 3445555543321110 1110012478777532
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...+.+..+.|++||.++..-
T Consensus 256 g~----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 256 SA----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CC----HHHHHHHHHHhcCCcEEEEeC
Confidence 22 246778889999999988764
No 351
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=70.65 E-value=12 Score=35.37 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=55.3
Q ss_pred CCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 122 SGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
.+.+|+=+|.|. |..+. ...+++|+.+|.++...+.+...+..+. +..++...-..+|+|+..- +.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t~-----p~--- 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPF--HLSELAEEVGKIDIIFNTI-----PA--- 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeee--cHHHHHHHhCCCCEEEECC-----Ch---
Confidence 578999999987 44321 2457899999999988777776665543 2222221124689999852 22
Q ss_pred HHHHHHHHHHccccCcEEEEE
Q 017080 198 RKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.-+-+++.+.++||+.++-.
T Consensus 221 -~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 221 -LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred -hhhhHHHHHcCCCCcEEEEE
Confidence 22345667788998765543
No 352
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=70.49 E-value=28 Score=34.28 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=56.2
Q ss_pred CCCCCCEEEEEC-Ccc-Ccccc---cCC--C-ceEEEEeCCHHHHHHHHHc--------CCeEEEeeCCC---CC-----
Q 017080 119 SLPSGSLVLDAG-CGN-GKYLG---LNP--D-CFFVGCDISPSLIKICVDR--------GHEVLVADAVN---LP----- 174 (377)
Q Consensus 119 ~~~~~~~vLDiG-cG~-G~~~~---~~~--~-~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~---~~----- 174 (377)
.+.++.+||=+| +|. |.++. ... + .+|+++|.++..++.+++. +......|..+ +.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLME 251 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHH
Confidence 457788999997 343 65542 122 3 3799999999999998875 33322222211 10
Q ss_pred -CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 175 -YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 175 -~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.....+|+|+.... . ...+....+.++++|.+++.
T Consensus 252 ~t~g~g~D~vid~~g-----~----~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 252 LTGGQGFDDVFVFVP-----V----PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HhCCCCCCEEEEcCC-----C----HHHHHHHHHHhccCCeEEEE
Confidence 12235888876321 1 25677788899988876554
No 353
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=70.47 E-value=1.9 Score=43.00 Aligned_cols=96 Identities=21% Similarity=0.184 Sum_probs=67.5
Q ss_pred HhCCCCCCEEEEECCccCcc----cccCCCc-eEEEEeCCHHHHHHHHHc---C-----CeEEEeeCCCC----CCCCCc
Q 017080 117 LNSLPSGSLVLDAGCGNGKY----LGLNPDC-FFVGCDISPSLIKICVDR---G-----HEVLVADAVNL----PYRSDF 179 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~G~~----~~~~~~~-~v~gvD~s~~~~~~a~~~---~-----~~~~~~d~~~~----~~~~~~ 179 (377)
.....++-+|||.=|++|.- +...++. +|++.|.++..++..+.+ | +.....|+..+ +-....
T Consensus 104 ~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 104 LKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKF 183 (525)
T ss_pred hhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccc
Confidence 33445677999999999984 3345555 899999999999987776 2 22334454432 223578
Q ss_pred eeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 180 GDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 180 fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
||+|-.- -.-. +..+|..+.+.++.||.|.++.
T Consensus 184 FDvIDLD----PyGs---~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 184 FDVIDLD----PYGS---PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cceEecC----CCCC---ccHHHHHHHHHhhcCCEEEEEe
Confidence 9988652 1223 5689999999999999999974
No 354
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=70.38 E-value=16 Score=33.76 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=60.5
Q ss_pred CCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 119 SLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
.+.+|+.-.|+|.-.|.++-. ..+..|++||-.+-.......-.++....|...+.......|-.+|-.|= .
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE----k-- 281 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVE----K-- 281 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhc----C--
Confidence 467899999999999998743 77889999997654333332224666777776654345678998887642 2
Q ss_pred HHHHHHHHHHHccccC
Q 017080 197 RRKKAIEELVRVVKKG 212 (377)
Q Consensus 197 ~~~~~l~~~~r~Lkpg 212 (377)
|.++-+.+...|..|
T Consensus 282 -P~rv~~li~~Wl~nG 296 (358)
T COG2933 282 -PARVAALIAKWLVNG 296 (358)
T ss_pred -cHHHHHHHHHHHHcc
Confidence 566666677777643
No 355
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.38 E-value=20 Score=34.47 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=60.7
Q ss_pred CCCCCCEEEEECCcc-Cccc----ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-------CCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-------PYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~----~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-------~~~~~~fD~V~~~ 186 (377)
+.++|.+|.=+|||. |..+ ......+++++|+++.-+++|++-+..-..-..+.. .+.++-.|.++
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~-- 259 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAF-- 259 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEE--
Confidence 567889999999987 5432 123445999999999999999998643322221110 12233445552
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+..-+ ...++.....+.++|..++.-...
T Consensus 260 ---e~~G~----~~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 260 ---ECVGN----VEVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred ---EccCC----HHHHHHHHHHHhcCCeEEEEecCC
Confidence 33333 347777788888899988875443
No 356
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=69.83 E-value=24 Score=34.07 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=59.9
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCC----C-----CCCCCceeEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN----L-----PYRSDFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~----~-----~~~~~~fD~V 183 (377)
..+.++.+||=+|+|. |.++. ...++ .|+++|.++...+.+++.+..... |..+ + ....+.+|+|
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~v~~~~~~g~d~v 260 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCV-NPKDHDKPIQQVLVEMTDGGVDYT 260 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEE-cccccchHHHHHHHHHhCCCCcEE
Confidence 3467889999998764 44432 24567 799999999999998876654322 1111 1 0112368888
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccC-cEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~ 219 (377)
+-.. .. ...+.+..+.|+++ |.+++.-
T Consensus 261 id~~-----g~----~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 261 FECI-----GN----VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred EECC-----CC----hHHHHHHHHhhccCCCeEEEEc
Confidence 7632 22 24677788899987 9888764
No 357
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.11 E-value=28 Score=33.14 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=59.9
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~ 184 (377)
..++++.+||=.|+|. |..+. ...+. .++++|.++...+.+++.++.... +..... .....+|+|+
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v-~~~~~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIV-DYKNGDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEe-cCCCCCHHHHHHHHhCCCCCcEEE
Confidence 3567788999998764 44331 24566 699999999888888877654332 221111 1234589887
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... .. ...+.++.+.|+++|.++...
T Consensus 241 d~~-----g~----~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 241 IAG-----GG----QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred ECC-----CC----HHHHHHHHHHhhcCCEEEEec
Confidence 532 11 256788899999999987654
No 358
>PRK13699 putative methylase; Provisional
Probab=68.96 E-value=5.6 Score=35.98 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=35.4
Q ss_pred CCCCCEEEEECCccCccc--ccCCCceEEEEeCCHHHHHHHHHc
Q 017080 120 LPSGSLVLDAGCGNGKYL--GLNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~--~~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
-.+|..|||-=||+|..+ ....+.+.+|+|+++.-.+.+.++
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHH
Confidence 357889999999999965 346677999999999999888776
No 359
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=68.79 E-value=31 Score=32.98 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=57.6
Q ss_pred CCCCCEEEEECCcc-Cccc---ccCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-----------CCCCceeEE
Q 017080 120 LPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-----------YRSDFGDAA 183 (377)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~---~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-----------~~~~~fD~V 183 (377)
..++.+||=.|+|. |..+ ....++ .|++++.++...+.+++.++..+. +..... .....+|+|
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~~~~~~~~~d~v 253 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATI-DIDELPDPQRRAIVRDITGGRGADVV 253 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEE-cCcccccHHHHHHHHHHhCCCCCcEE
Confidence 34788899888754 4332 125567 899999999888888766654322 111111 113468988
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+.... . ...+....+.|+++|.++..-
T Consensus 254 id~~g-----~----~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 254 IEASG-----H----PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred EECCC-----C----hHHHHHHHHHhccCCEEEEEc
Confidence 85421 1 245677889999999988664
No 360
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=68.30 E-value=2.9 Score=42.83 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=55.0
Q ss_pred hCCCCCCEEEEECCccCccccc-----CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC----C----CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGNGKYLGL-----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL----P----YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~~~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~----~----~~~~~fD~V~ 184 (377)
..+.++..|||+||.+|.|++. ..+.-|+|+|+-|.-+ ..++..++.|+..- + ...-+.|+|+
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp----~~~c~t~v~dIttd~cr~~l~k~l~t~~advVL 115 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKP----IPNCDTLVEDITTDECRSKLRKILKTWKADVVL 115 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeeccc----CCccchhhhhhhHHHHHHHHHHHHHhCCCcEEe
Confidence 3467889999999999998753 4567999999977421 01233334444321 1 1112336666
Q ss_pred eccc----hhhcC----ChHHHHHHHHHHHHccccCcEEEE
Q 017080 185 SIAV----LHHLS----TESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 185 ~~~~----l~h~~----~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
.-++ ..|+. ........|+-....|+.||.++-
T Consensus 116 hDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 116 HDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred ecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 5331 11111 112134566667788889999443
No 361
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.29 E-value=90 Score=29.66 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=82.3
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccc-c---c--CCCceEEEEeCCHHHHHHHHHc------------------------
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYL-G---L--NPDCFFVGCDISPSLIKICVDR------------------------ 161 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~-~---~--~~~~~v~gvD~s~~~~~~a~~~------------------------ 161 (377)
.+..++........|+.+|||.-.+. + . .+...++=||.++........+
T Consensus 77 ~v~~Fl~~~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~ 156 (335)
T KOG2918|consen 77 AVRAFLEQTDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTD 156 (335)
T ss_pred HHHHHHHhcCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcce
Confidence 34456666556679999999986632 2 1 3566888899888776655222
Q ss_pred ----CCeEEEeeCCCCC----------CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccch
Q 017080 162 ----GHEVLVADAVNLP----------YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 227 (377)
Q Consensus 162 ----~~~~~~~d~~~~~----------~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 227 (377)
+...+-+|+.++. ...+-.-++++--+|-+++.++ -..+++.+...-...+.+...-..+.+..
T Consensus 157 l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~-S~~Li~w~~~~F~~a~fv~YEQi~~~D~F- 234 (335)
T KOG2918|consen 157 LHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEE-SANLIKWAASKFENAHFVNYEQINPNDRF- 234 (335)
T ss_pred eccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHH-HHHHHHHHHHhCCcccEEEEeccCCCChH-
Confidence 0111222222210 0011123344455666666543 45667777766655544443333322111
Q ss_pred hhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHHhHhhcCCCcc
Q 017080 228 SLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIPETEDNGSEEQ 274 (377)
Q Consensus 228 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~ 274 (377)
...+.........+..+...+.+.+..++.+.++||+.
T Consensus 235 ---------g~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~ 272 (335)
T KOG2918|consen 235 ---------GKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEY 272 (335)
T ss_pred ---------HHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCce
Confidence 12222222222333444567888999999999999944
No 362
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=68.26 E-value=32 Score=32.23 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=60.0
Q ss_pred hCCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~~~fD~V~~ 185 (377)
..+.+|.+||=.|.+ .|.++. ...+++|++++.++...+.+++.+++.+. |..... ...+.+|+|+.
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi-~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVF-NYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEE-eCCCccHHHHHHHHCCCCcEEEEE
Confidence 346788999988853 355432 25678999999999998888887664332 222111 11245888875
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
... . ..+....+.|+++|.++..
T Consensus 218 ~~g-----~-----~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 218 NVG-----G-----EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCC-----H-----HHHHHHHHhhccCCEEEEE
Confidence 321 1 4567889999999998765
No 363
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=68.09 E-value=26 Score=33.80 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=59.0
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCC--C-------CCCCCceeEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN--L-------PYRSDFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~--~-------~~~~~~fD~V 183 (377)
..+.++.+||=+|+|. |.++. ...++ +|+++|.++...+.+++.++..+. +..+ . ....+.+|+|
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i-~~~~~~~~~~~~~~~~~~~g~d~v 258 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFI-NPKDSDKPVSEVIREMTGGGVDYS 258 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEe-ccccccchHHHHHHHHhCCCCCEE
Confidence 3467889999998864 44432 24566 799999999999988776654322 1111 0 0112458888
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccC-cEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~ 219 (377)
+-.. .. ...+.+..+.|+|+ |.+++..
T Consensus 259 id~~-----g~----~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 259 FECT-----GN----ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred EECC-----CC----hHHHHHHHHhcccCCCEEEEEc
Confidence 7532 22 24677788899886 8887764
No 364
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=66.81 E-value=31 Score=32.71 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=60.3
Q ss_pred hCCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHH-cCCeEEEe-eCC-CC-----CCCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVD-RGHEVLVA-DAV-NL-----PYRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~-d~~-~~-----~~~~~~fD~V~ 184 (377)
..+.+|.+||=.|++ .|.++. ...+++|++++.++...+.+++ .+...... +-. ++ ....+.+|+|+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~ 226 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYF 226 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEE
Confidence 356789999999873 355542 2567899999999998888887 55543322 111 11 01124688887
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
-... . ..+.+..+.|+++|.++..-
T Consensus 227 d~~g-----~-----~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 227 DNVG-----G-----KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred ECCC-----H-----HHHHHHHHHhccCcEEEEec
Confidence 6421 1 45778889999999988653
No 365
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=66.38 E-value=20 Score=35.97 Aligned_cols=104 Identities=14% Similarity=0.253 Sum_probs=64.9
Q ss_pred CCCEEEEECCccCcccc----cCCCceEEEEeCCHHHHHHHHHc-------CCeEEEeeCCCC-------CCCCCceeEE
Q 017080 122 SGSLVLDAGCGNGKYLG----LNPDCFFVGCDISPSLIKICVDR-------GHEVLVADAVNL-------PYRSDFGDAA 183 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~~----~~~~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~-------~~~~~~fD~V 183 (377)
.+..+|=+|=|.|.+.. ..|...++++++.|.+++.|++. ..++...|.... .-.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 34567777777777643 26788999999999999999987 122222222210 0134568887
Q ss_pred Eecc---chhhcCC--hH-HHHHHHHHHHHccccCcEEEEEEcCCCcc
Q 017080 184 ISIA---VLHHLST--ES-RRKKAIEELVRVVKKGSLVLITVWAVEQE 225 (377)
Q Consensus 184 ~~~~---~l~h~~~--~~-~~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 225 (377)
..-- -.|-+.- .. --..+|..+...|.|-|.+.|.-......
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~ 422 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSS 422 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcc
Confidence 6521 1222211 11 03578889999999999998876554443
No 366
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=66.37 E-value=7.7 Score=32.13 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=54.8
Q ss_pred EEEECCcc-Cccccc---CCCceEEEEeCCHHHHHHHHHcCCeEEEee-------CCCCC---CCCCceeEEEeccchhh
Q 017080 126 VLDAGCGN-GKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVAD-------AVNLP---YRSDFGDAAISIAVLHH 191 (377)
Q Consensus 126 vLDiGcG~-G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d-------~~~~~---~~~~~fD~V~~~~~l~h 191 (377)
|+=+|+|. |.+... ..+.+|+.++-++ ..+..++.++.+...+ ....+ ...+.+|+|+..-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v---- 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV---- 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S----
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe----
Confidence 45678877 664321 3788999999988 6776666654443222 00011 2357899988863
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
+..+ ...+++.+.+.+.|+..+++.
T Consensus 76 -Ka~~-~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 76 -KAYQ-LEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp -SGGG-HHHHHHHHCTGEETTEEEEEE
T ss_pred -cccc-hHHHHHHHhhccCCCcEEEEE
Confidence 2222 578999999999999766554
No 367
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=66.17 E-value=33 Score=32.45 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=60.5
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
..+.++.+||-.|+|. |..+. ...+.+|+++..++...+..++.+...+. +..... .+...+|+++.
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~-~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTI-NVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEe-cCcccCHHHHHHHHhCCCCCCEEEE
Confidence 4567888999998764 44432 25678999998899888888665533222 211111 12345899887
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
... . ...+.++.+.|+++|.++....
T Consensus 234 ~~g-----~----~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 234 ATG-----N----PASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred CCC-----C----HHHHHHHHHHHhcCCEEEEEcC
Confidence 521 1 2467888899999999876543
No 368
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=66.09 E-value=13 Score=35.62 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=55.3
Q ss_pred CCCEEEEECCcc-Cccc-c--cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 122 SGSLVLDAGCGN-GKYL-G--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~-~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
.+++|.=||.|. |.-. . ...+.+|++.|......+.+...+..+ .++.++ -..-|+|+.. +|+++.
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v--~sl~Ea---ak~ADVV~ll-----LPd~~t 84 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV--MSVSEA---VRTAQVVQML-----LPDEQQ 84 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE--CCHHHH---HhcCCEEEEe-----CCChHH
Confidence 578999999997 6532 2 256778988865555555555555532 233322 2345888874 555443
Q ss_pred HHHHH-HHHHHccccCcEEEEE
Q 017080 198 RKKAI-EELVRVVKKGSLVLIT 218 (377)
Q Consensus 198 ~~~~l-~~~~r~LkpgG~l~i~ 218 (377)
..++ .++...||||..|+++
T Consensus 85 -~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 85 -AHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred -HHHHHHHHHhcCCCCCEEEEC
Confidence 4454 5799999999988886
No 369
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=65.74 E-value=33 Score=32.47 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=58.9
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCC-C---C-C-CCCCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAV-N---L-P-YRSDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~-~---~-~-~~~~~fD~V~~~ 186 (377)
..+.++.+||-.|+|. |..+. ...+.. +++++.++...+..++.+...+...-. . + . .....+|+++..
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~ 234 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEA 234 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEEC
Confidence 3567888999998655 44431 256666 999999998888876655432221110 0 0 1 122348988864
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... ...+..+.+.|+++|.++...
T Consensus 235 -----~g~----~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 235 -----AGS----PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred -----CCC----HHHHHHHHHHhhcCCEEEEEc
Confidence 212 356788899999999987764
No 370
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=65.68 E-value=33 Score=33.10 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=59.7
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCC---CC-----CCCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV---NL-----PYRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~---~~-----~~~~~~fD~V~ 184 (377)
..+.++.+||=.|+|. |.++. ...++ +|+++|.++...+.+++.+.......-. .+ ....+.+|+++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vi 262 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSF 262 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 3567899999998764 44332 25566 7999999999999998776543221111 11 01123578777
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccC-cEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~~ 220 (377)
-. +.. ...+....+.+++| |.+++.-.
T Consensus 263 d~-----~G~----~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 263 EC-----TGN----IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred EC-----CCC----hHHHHHHHHHhhcCCCEEEEECc
Confidence 53 222 34667778888996 98877643
No 371
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=65.55 E-value=29 Score=35.87 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=60.4
Q ss_pred CEEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCCCceeEEEeccchhhcCCh
Q 017080 124 SLVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~~~ 195 (377)
.+|+=+|||. |..+. . ..+.+++.+|.+++.++.+++.+...+.+|+.+.. ..-+..|.+++. ++|+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~-----~~~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLT-----IPNG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEE-----cCCh
Confidence 5788899988 66442 2 45779999999999999999889999999998742 122467766543 3332
Q ss_pred HHHHHHHHHHHHccccCcEEEEEE
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+ -...+-...|...|...++...
T Consensus 493 ~-~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 493 Y-EAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEE
Confidence 2 1223333445567776666543
No 372
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=64.64 E-value=15 Score=34.71 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=42.2
Q ss_pred HHHHHHhCCCCCCEEEEECCccCcccc----cC-CCceEEEEeCCHHHHHHHHHc------CCeEEEeeCCC
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLG----LN-PDCFFVGCDISPSLIKICVDR------GHEVLVADAVN 172 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~----~~-~~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~ 172 (377)
+....+. ..++...+|.=-|.|..++ .. +..+++|+|-++.+++.|++. ++.++.+++.+
T Consensus 14 E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 14 EVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 4444444 3456799999889888654 23 346799999999999999986 34455555444
No 373
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=64.60 E-value=21 Score=33.43 Aligned_cols=85 Identities=21% Similarity=0.158 Sum_probs=57.4
Q ss_pred CEEEEECCcc-Ccc-cc----cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 124 SLVLDAGCGN-GKY-LG----LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 124 ~~vLDiGcG~-G~~-~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
.+|+=+|.|- |.. ++ ......++|.|.+....+.+...++.....+... -......|+|+..--+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~-~~~~~~aD~VivavPi~~------ 76 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGL-AEAAAEADLVIVAVPIEA------ 76 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchh-hhhcccCCEEEEeccHHH------
Confidence 4788888886 553 32 2455678999999999998887766554322110 112445799998765554
Q ss_pred HHHHHHHHHHccccCcEE
Q 017080 198 RKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l 215 (377)
...+++++...|+||..+
T Consensus 77 ~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 77 TEEVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHHHhcccCCCCCEE
Confidence 457899999999998543
No 374
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.42 E-value=38 Score=32.13 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=59.7
Q ss_pred HhCCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEE-eeCCCC---------CCCCCcee
Q 017080 117 LNSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLV-ADAVNL---------PYRSDFGD 181 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~-~d~~~~---------~~~~~~fD 181 (377)
...+.++.+||-.|+|. |..+. ...+.. |+.++.++...+.+++.+...+. .+-... ......+|
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCC
Confidence 34567888999887754 44331 255666 89999888888877665443221 111111 12235589
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+|+.... . ...+.+..+.|+++|.++....
T Consensus 237 ~vld~~g-----~----~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 237 VVIECTG-----A----ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred EEEECCC-----C----HHHHHHHHHHhhcCCEEEEEcc
Confidence 9886432 1 2367788999999999876643
No 375
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=64.03 E-value=22 Score=34.67 Aligned_cols=89 Identities=15% Similarity=0.056 Sum_probs=55.3
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHH-HHHHHHcCCeEEEeeCCC---CCCCCCceeEEEeccchhhc
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSL-IKICVDRGHEVLVADAVN---LPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~-~~~a~~~~~~~~~~d~~~---~~~~~~~fD~V~~~~~l~h~ 192 (377)
.++.+||=.|+|. |.++. ...+++|++++.++.. .+.+++.+...... ..+ +.-..+.+|+|+-..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~-~~~~~~v~~~~~~~D~vid~~----- 250 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLV-TTDSQKMKEAVGTMDFIIDTV----- 250 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEc-CcCHHHHHHhhCCCcEEEECC-----
Confidence 4788999999865 54432 2567789999987654 56666656543321 111 100012478877642
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...+.+..+.|++||.++..-
T Consensus 251 G~----~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 251 SA----EHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred Cc----HHHHHHHHHhhcCCCEEEEEc
Confidence 22 246778889999999988764
No 376
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=64.01 E-value=28 Score=32.43 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=53.5
Q ss_pred EEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeC----CCC--CCCCCceeEEEeccchhhcCC
Q 017080 125 LVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVDRGHEVLVADA----VNL--PYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 125 ~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~----~~~--~~~~~~fD~V~~~~~l~h~~~ 194 (377)
+|+=||+|. |.... . ..+.+|+.++.++..++..++.++.+..++. ... +.....+|+|+..---. +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~~---~ 78 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKAY---Q 78 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEecccc---c
Confidence 688899987 55332 1 4567999999988877777666543311110 001 11125689888753221 1
Q ss_pred hHHHHHHHHHHHHccccCcEEEEE
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
...+++.+...+.++..+++.
T Consensus 79 ---~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 79 ---LPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred ---HHHHHHHHhhhcCCCCEEEEe
Confidence 567888888888877655543
No 377
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=63.73 E-value=5.2 Score=39.06 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=52.1
Q ss_pred CCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCC---CCCCCCCceeEEEeccchhhcC
Q 017080 122 SGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDR-GHEVLVADAV---NLPYRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~---~~~~~~~~fD~V~~~~~l~h~~ 193 (377)
++.+|+=+|+|. |..+. ...+++|+.+|.++...+.+... +.. +..+.. .+.-.-..+|+|+..-.+.--+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~-v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGR-IHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCce-eEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 346799999986 55432 24567899999998877666544 221 111111 1110114679999753221111
Q ss_pred ChHHHHHHHHHHHHccccCcEEEEE
Q 017080 194 TESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
. +.-+-+++.+.+|||++++-.
T Consensus 245 ~---p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 245 A---PKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred C---CcCcCHHHHhcCCCCCEEEEE
Confidence 1 222335666778999876654
No 378
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=62.50 E-value=33 Score=32.07 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=50.9
Q ss_pred EEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeC---------CCCCCCCCceeEEEeccchhh
Q 017080 125 LVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVDRGHEVLVADA---------VNLPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 125 ~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~---------~~~~~~~~~fD~V~~~~~l~h 191 (377)
+|+=+|+|. |.... . ..+.+|+.++. +..++..++.++.....+. .+.......+|+|+..---.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~- 79 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY- 79 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence 688899998 44322 1 34678999998 7777766665543322110 01111125689877653211
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
. ...+++++...+.++..++.
T Consensus 80 --~---~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 80 --Q---LDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred --C---HHHHHHHHHhhcCCCCEEEE
Confidence 2 56788888888888765443
No 379
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=62.43 E-value=30 Score=32.71 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=57.3
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~ 184 (377)
..+.++.+||-.|+|. |..+. ...+. .+++++.++...+.+++.+...+. +..+.. ...+.+|+++
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~i~~~~~~~~~d~vl 241 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDII-NPKNGDIVEQILELTGGRGVDCVI 241 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEE-cCCcchHHHHHHHHcCCCCCcEEE
Confidence 3567788999977653 44331 24454 788998888888877766533221 111110 1235689888
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.... . ...+.+..+.|+++|.++...
T Consensus 242 d~~g-----~----~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 242 EAVG-----F----EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EccC-----C----HHHHHHHHHHhhcCCEEEEEc
Confidence 6421 1 246778889999999987653
No 380
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=62.33 E-value=14 Score=37.31 Aligned_cols=85 Identities=21% Similarity=0.199 Sum_probs=54.8
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
-.|.+|+=+|+|. |.... ...+++|+.+|.++.....+...+..+. ++.++ -...|+|++.-. .
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~--~leel---l~~ADIVI~atG-----t-- 319 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV--TLEDV---VETADIFVTATG-----N-- 319 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec--cHHHH---HhcCCEEEECCC-----c--
Confidence 3688999999998 65432 2567799999888776544444444332 33222 235799987532 2
Q ss_pred HHHHHH-HHHHHccccCcEEEEEE
Q 017080 197 RRKKAI-EELVRVVKKGSLVLITV 219 (377)
Q Consensus 197 ~~~~~l-~~~~r~LkpgG~l~i~~ 219 (377)
..++ .+....+|||++|+-.-
T Consensus 320 --~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 320 --KDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred --ccccCHHHHhccCCCcEEEEcC
Confidence 2344 47888899999877663
No 381
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=61.92 E-value=47 Score=33.84 Aligned_cols=112 Identities=16% Similarity=0.206 Sum_probs=66.7
Q ss_pred ccchHHHHHHHhC-----CCCCCEEEEECCccCccccc--------CCCceEEEEeCCHHHHHHHHHc----CC-----e
Q 017080 107 FAKWPKVATFLNS-----LPSGSLVLDAGCGNGKYLGL--------NPDCFFVGCDISPSLIKICVDR----GH-----E 164 (377)
Q Consensus 107 ~~~~~~~~~~l~~-----~~~~~~vLDiGcG~G~~~~~--------~~~~~v~gvD~s~~~~~~a~~~----~~-----~ 164 (377)
+...+.+..++.. ..++..|.|.-||+|.++.. .....++|.+..+.+...++.+ ++ .
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~ 276 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFN 276 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccC
Confidence 4445555554432 12557899999999997631 1124689999999999888865 11 1
Q ss_pred EEEeeCCC-CCC-CCCceeEEEeccc------------------------hhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 165 VLVADAVN-LPY-RSDFGDAAISIAV------------------------LHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 165 ~~~~d~~~-~~~-~~~~fD~V~~~~~------------------------l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
...+|-.. ..+ ....||.|+++-. +.+..+. =..++..+..+|++||...+.
T Consensus 277 ~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~--~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 277 IINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKA--DLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred cccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchh--hHHHHHHHHHhcCCCCeEEEE
Confidence 11222111 111 2345777765331 1122222 257888899999999987666
Q ss_pred Ec
Q 017080 219 VW 220 (377)
Q Consensus 219 ~~ 220 (377)
-+
T Consensus 355 ~~ 356 (501)
T TIGR00497 355 CF 356 (501)
T ss_pred ec
Confidence 54
No 382
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=61.39 E-value=56 Score=31.73 Aligned_cols=94 Identities=12% Similarity=0.139 Sum_probs=60.2
Q ss_pred hCCCCCCEEEEECCcc-Cccc---ccCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCC----CC-----C-CCCCceeE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV----NL-----P-YRSDFGDA 182 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~---~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~----~~-----~-~~~~~fD~ 182 (377)
..+.++.+||=.|+|. |..+ ....++ .|++++.++...+.+++.+++.+...-. ++ . .....+|+
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDv 278 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADI 278 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCE
Confidence 3567888888888754 3332 125566 7999999998878877776644321110 10 0 12345898
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
|+... .+ ....+.++.+.|+++|.++...
T Consensus 279 vld~~-----g~---~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 279 QVEAA-----GA---PPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred EEECC-----CC---cHHHHHHHHHHHHcCCEEEEEC
Confidence 87642 22 2356788889999999988753
No 383
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=60.58 E-value=52 Score=31.33 Aligned_cols=93 Identities=11% Similarity=0.145 Sum_probs=59.7
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~ 184 (377)
..+.++.+||=.|+|. |.++. ...++ .|++++.++...+.+++.+..... |..+.. ...+.+|+|+
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i-~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVL-DPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE-CCCccCHHHHHHHHhCCCCCCEEE
Confidence 3466788999998653 33321 25567 899999999988888776654432 222111 1223488887
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
-... . ...++.+.+.|+++|.++....
T Consensus 247 d~~g-----~----~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 247 DCAG-----V----QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred ECCC-----C----HHHHHHHHHhccCCCEEEEEcc
Confidence 6432 1 2467788899999999877643
No 384
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=60.51 E-value=28 Score=34.15 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=34.9
Q ss_pred HHHHHHhCCCCCCEEEEECCccCccccc--CCCceEEEEeCCHHHHHHHH
Q 017080 112 KVATFLNSLPSGSLVLDAGCGNGKYLGL--NPDCFFVGCDISPSLIKICV 159 (377)
Q Consensus 112 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~--~~~~~v~gvD~s~~~~~~a~ 159 (377)
++...+..+.++.+||-|.+|....+.+ ..-.+|++||+||.+.....
T Consensus 25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 25 RVDMEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred HHHHHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHH
Confidence 4444445678999999998777665543 34469999999999876554
No 385
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=58.63 E-value=58 Score=30.75 Aligned_cols=89 Identities=13% Similarity=0.198 Sum_probs=55.5
Q ss_pred CCCCCCEEEEECCcc--Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----CCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGN--GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~--G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-----~~~~~~fD~V~~~~~ 188 (377)
.+.++.+||=.|+.. |..+. ...++++++++.+. ..+.+++.++.++....... ......+|+|+....
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g 252 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVG 252 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCC
Confidence 467889999999832 44432 35678888888655 66777666665332211111 012346898886432
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
. ..+..+.+.|+++|.++..
T Consensus 253 -----~-----~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 253 -----G-----PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred -----H-----HHHHHHHHHhccCCEEEEe
Confidence 1 2467778899999998754
No 386
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=58.14 E-value=18 Score=34.02 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=58.0
Q ss_pred EeCCHHHHHHHHHc--CCeEEEeeCCCCC--CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 148 CDISPSLIKICVDR--GHEVLVADAVNLP--YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 148 vD~s~~~~~~a~~~--~~~~~~~d~~~~~--~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
+.+.+...+.++++ .+.++.+|+.++- -+.+..|.++...+-.++++.+ ...++.++.+-+.||..+++-+-
T Consensus 292 ~yl~~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~q-ln~lws~isrta~~gA~VifRta 367 (414)
T COG5379 292 AYLDEGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQ-LNSLWSEISRTAEAGARVIFRTA 367 (414)
T ss_pred hhhchhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccch-HHHHHHHHhhccCCCcEEEEecc
Confidence 34455666666665 5788888887743 3568899999999999999977 89999999999999999988753
No 387
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=57.60 E-value=56 Score=30.84 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=59.1
Q ss_pred CCCCCCEEEEECCcc-Cccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC-CCC---CCCCceeEEEeccchh
Q 017080 119 SLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NLP---YRSDFGDAAISIAVLH 190 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~~---~~~~~fD~V~~~~~l~ 190 (377)
.+.++.+||=.|+|. |..+ ....+.+++.++.++...+.+++.++........ ++. ...+.+|+++..
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~---- 235 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILAT---- 235 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEEC----
Confidence 567788999999654 4433 1256778999999998888887766543322111 110 001347888753
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... ...+..+.+.|+++|.++...
T Consensus 236 -~g~----~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 236 -APN----AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred -CCc----hHHHHHHHHHcccCCEEEEEe
Confidence 211 256778889999999988764
No 388
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=56.59 E-value=68 Score=30.34 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=57.1
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCC-CC------CCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAV-NL------PYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~------~~~~~~fD~V~~~ 186 (377)
.+.++.+||-.|+|. |..+. ...+.+ |++++-++...+.+++.++........ ++ ....+.+|+|+..
T Consensus 158 ~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~ 237 (340)
T TIGR00692 158 GPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEM 237 (340)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEEC
Confidence 456788888877652 33321 255675 888988888888777766543222111 11 0123568998874
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. . ...+.++.+.|+++|.++...
T Consensus 238 ~g-----~----~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 238 SG-----A----PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CC-----C----HHHHHHHHHhhcCCCEEEEEc
Confidence 21 1 246788899999999987654
No 389
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=56.58 E-value=63 Score=30.49 Aligned_cols=89 Identities=9% Similarity=-0.013 Sum_probs=55.7
Q ss_pred CEEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHHc-CCeEEEeeC-CCC------CCCCCceeEEEeccchhh
Q 017080 124 SLVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVDR-GHEVLVADA-VNL------PYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~-~~~------~~~~~~fD~V~~~~~l~h 191 (377)
++|+=+|+|. |.+.. . ..+.+|+.++.+...++..++. ++.....+- ... +...+.||+|+..-=-++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 4799999997 66532 1 4567899999988777766654 443321110 011 112357898877532111
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
...+++.+...+.|+..++..
T Consensus 83 ------~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 83 ------AEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred ------HHHHHHHHHhhCCCCCEEEEE
Confidence 567889999999998865554
No 390
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=56.17 E-value=74 Score=30.09 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=57.8
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCC-ceEEEEeCCHHHHHHHHHcCCeEEEeeCC-CC------CCCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPD-CFFVGCDISPSLIKICVDRGHEVLVADAV-NL------PYRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~------~~~~~~fD~V~~ 185 (377)
..+.++.+||=.|+|. |..+. ...+ ..+++++.++.....+++.++..+...-. ++ ......+|+|+.
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIE 241 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEE
Confidence 3456788888777643 33321 2455 68899999988888777666533322111 10 012346898875
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. .. ...+..+.+.|+++|.++...
T Consensus 242 ~~-----g~----~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 242 AV-----GI----PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CC-----CC----HHHHHHHHHhccCCcEEEEec
Confidence 42 22 245788889999999987653
No 391
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=55.69 E-value=21 Score=32.85 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=45.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHcCCeEEEee-CCCCCCCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 140 NPDCFFVGCDISPSLIKICVDRGHEVLVAD-AVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 140 ~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d-~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.+..+|+|+|.++..++.|.+.++.....+ .+. -..+|+|+..--+.. ...+++++...+++|+.+.=.
T Consensus 9 g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~----~~~~DlvvlavP~~~------~~~~l~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 9 GPDVEVYGYDRDPETLEAALELGIIDEASTDIEA----VEDADLVVLAVPVSA------IEDVLEEIAPYLKPGAIVTDV 78 (258)
T ss_dssp TTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHH----GGCCSEEEE-S-HHH------HHHHHHHHHCGS-TTSEEEE-
T ss_pred CCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhH----hcCCCEEEEcCCHHH------HHHHHHHhhhhcCCCcEEEEe
Confidence 556899999999999999988765443322 111 134599988765554 567899999999998755443
No 392
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=55.35 E-value=36 Score=31.64 Aligned_cols=79 Identities=15% Similarity=0.006 Sum_probs=49.1
Q ss_pred EEEEECCcc-Cc-cccc--CCCceEEEEeCCHHHHHHHHHcCCe-EEEeeCCCCCCCCCceeEEEeccchhhcCChHHHH
Q 017080 125 LVLDAGCGN-GK-YLGL--NPDCFFVGCDISPSLIKICVDRGHE-VLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRK 199 (377)
Q Consensus 125 ~vLDiGcG~-G~-~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~ 199 (377)
+|.=||+|. |. ++.. ..+.+|+++|.++..++.+...+.. ....+.+ .-...|+|+..-.... ..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~----~~~~aDlVilavp~~~------~~ 71 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLS----LLKDCDLVILALPIGL------LL 71 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHh----HhcCCCEEEEcCCHHH------HH
Confidence 566788886 44 3322 4467999999999998888776431 1111111 1234688888643322 45
Q ss_pred HHHHHHHHccccCc
Q 017080 200 KAIEELVRVVKKGS 213 (377)
Q Consensus 200 ~~l~~~~r~LkpgG 213 (377)
++++++...++|+.
T Consensus 72 ~~~~~l~~~l~~~~ 85 (279)
T PRK07417 72 PPSEQLIPALPPEA 85 (279)
T ss_pred HHHHHHHHhCCCCc
Confidence 67788888888764
No 393
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=55.04 E-value=60 Score=30.72 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=55.5
Q ss_pred CCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEe-eCCCCC-----CCCCceeEEEeccc
Q 017080 120 LPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVA-DAVNLP-----YRSDFGDAAISIAV 188 (377)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-d~~~~~-----~~~~~fD~V~~~~~ 188 (377)
..++.+||-.|+|. |..+. ...+. .|++++-++.-.+.+++.+...+.. .-.++. ...+.+|+|+..-.
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g 240 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSG 240 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCC
Confidence 35778888887654 44331 24566 7888888887777777665533221 111110 12346888886421
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ...+.++.+.|+++|.++...
T Consensus 241 -----~----~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 241 -----N----PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred -----C----HHHHHHHHHHhccCCEEEEEc
Confidence 1 245777888999999987654
No 394
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=54.69 E-value=51 Score=31.64 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=57.1
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEee-CCCC------CCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVAD-AVNL------PYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d-~~~~------~~~~~~fD~V~~~ 186 (377)
.+.++.+||=.|+|. |..+. ...+.. +++++.++...+.+++.++..+... -..+ ...+..+|+|+..
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~ 263 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEA 263 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEe
Confidence 346778888776542 33321 245566 9999999988888876665433221 1111 0123568988764
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+.. . ..+.++.+.|+++|.++...
T Consensus 264 -----vg~---~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 264 -----LGK---P-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred -----CCC---H-HHHHHHHHHHhcCCEEEEEc
Confidence 333 1 36778889999999987764
No 395
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=54.35 E-value=79 Score=29.12 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=59.9
Q ss_pred CCCCCCEEEEECCcc--Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----CCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCGN--GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~--G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-----~~~~~~fD~V~~~~~ 188 (377)
.+.++.+||=.|++. |..+. ...++.|+++..++...+.+++.++..+..+-.++ .. .+.+|+++...
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~- 216 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLELV- 216 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEECC-
Confidence 467788999998743 44432 36678899999999888888776664443221111 12 35688887642
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ..+.++.+.|+++|.++..-
T Consensus 217 ----~~-----~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 217 ----GT-----ATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred ----Ch-----HHHHHHHHHhccCCEEEEEc
Confidence 12 35777889999999987653
No 396
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=53.40 E-value=87 Score=26.99 Aligned_cols=82 Identities=17% Similarity=0.120 Sum_probs=47.7
Q ss_pred CCEEEEECCccCccc-cc---CCCceEEEEeCCHHHHHHHHH---c------CCeEEEeeCCCC---------CCCCCce
Q 017080 123 GSLVLDAGCGNGKYL-GL---NPDCFFVGCDISPSLIKICVD---R------GHEVLVADAVNL---------PYRSDFG 180 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~-~~---~~~~~v~gvD~s~~~~~~a~~---~------~~~~~~~d~~~~---------~~~~~~f 180 (377)
...|+-+|||-=... +. .++..++-+|....+-...+. . +.+++..|+.+. .+..+.-
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 449999999985432 22 347788899975433222111 1 367899999862 1334556
Q ss_pred eEEEeccchhhcCChHHHHHHHHHH
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEEL 205 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~ 205 (377)
-++++-+++.+++.++ ...+|+.+
T Consensus 159 tl~i~Egvl~Yl~~~~-~~~ll~~i 182 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPEQ-VDALLRAI 182 (183)
T ss_dssp EEEEEESSGGGS-HHH-HHHHHHHH
T ss_pred eEEEEcchhhcCCHHH-HHHHHHHh
Confidence 6888889999998644 55666554
No 397
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=53.22 E-value=74 Score=31.58 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=57.4
Q ss_pred EEEEECCcc-Cccccc---CCCceEEEEeCCHHHHHHHHH-cCCeEEEeeCCCCC----CCCCceeEEEeccchhhcCCh
Q 017080 125 LVLDAGCGN-GKYLGL---NPDCFFVGCDISPSLIKICVD-RGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 125 ~vLDiGcG~-G~~~~~---~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~~~ 195 (377)
+|+=+|+|. |..+.. ..+..|+.+|.++..++.+++ .++.++.+|..+.. ..-..+|.|++.. +++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~-----~~~ 76 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT-----DSD 76 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec-----CCh
Confidence 677888865 443221 457799999999999888876 46888889887632 1234678777743 222
Q ss_pred HHHHHHHHHHHHccccCcEEEEEE
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+ ....+....+.+.|.-.+++..
T Consensus 77 ~-~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 77 E-TNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred H-HHHHHHHHHHHhcCCCeEEEEE
Confidence 2 3455556666665655555544
No 398
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=52.83 E-value=14 Score=30.63 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=20.4
Q ss_pred EECCccC--cc---c---ccCCCceEEEEeCCHHHHHHHHHc
Q 017080 128 DAGCGNG--KY---L---GLNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 128 DiGcG~G--~~---~---~~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
|||++.| .. . ...++..|+++|++|...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 32 1 236788999999999987765544
No 399
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=52.47 E-value=86 Score=29.75 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=57.7
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~~~fD~V~~~ 186 (377)
.+.++.+||-.|+|. |..+. ...++ .|+.++.++...+.+++.++..+.. -.+.. ...+.+|+++..
T Consensus 172 ~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~d~vid~ 250 (350)
T cd08240 172 PLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVN-GSDPDAAKRIIKAAGGGVDAVIDF 250 (350)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEec-CCCccHHHHHHHHhCCCCcEEEEC
Confidence 344678899998654 44331 25566 7899999998888887766543322 12111 112257888753
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. .. ...+.+..+.|+++|.++...
T Consensus 251 ~-----g~----~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 251 V-----NN----SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred C-----CC----HHHHHHHHHHhhcCCeEEEEC
Confidence 2 21 246888899999999988653
No 400
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=52.10 E-value=91 Score=29.42 Aligned_cols=91 Identities=13% Similarity=0.166 Sum_probs=57.1
Q ss_pred CCCCC--CEEEEECC--ccCcccc---cCCCc-eEEEEeCCHHHHHHHHH-cCCeEEEeeC-CCC-----CCCCCceeEE
Q 017080 119 SLPSG--SLVLDAGC--GNGKYLG---LNPDC-FFVGCDISPSLIKICVD-RGHEVLVADA-VNL-----PYRSDFGDAA 183 (377)
Q Consensus 119 ~~~~~--~~vLDiGc--G~G~~~~---~~~~~-~v~gvD~s~~~~~~a~~-~~~~~~~~d~-~~~-----~~~~~~fD~V 183 (377)
.+.++ .+||=.|+ |.|.++. ...++ +|++++.++...+.+++ .+...+...- .++ ....+.+|+|
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEE
Confidence 35555 89999986 3355542 25677 79999999988888776 4554332211 111 0112468988
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+... .. ..+.+..+.|+++|.++..-
T Consensus 229 id~~-----g~-----~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDNV-----GG-----EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EECC-----Cc-----HHHHHHHHHhccCCEEEEEe
Confidence 7532 22 23577888999999988653
No 401
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.12 E-value=1.8e+02 Score=27.46 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=65.9
Q ss_pred CCEEEEECCccCccc-cc-C-CCceEEEEeCCHHHHHHHHHc----------CCeEEEeeCCC--CC--CC-----CCce
Q 017080 123 GSLVLDAGCGNGKYL-GL-N-PDCFFVGCDISPSLIKICVDR----------GHEVLVADAVN--LP--YR-----SDFG 180 (377)
Q Consensus 123 ~~~vLDiGcG~G~~~-~~-~-~~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~--~~--~~-----~~~f 180 (377)
...|+-+|||-=.-+ +. . ++..|.-+|.=+. ++.=++. ..+++..|+.+ ++ +. .+.-
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pev-i~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEV-IEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCCcHH-HHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 478999999974422 22 3 3578888887443 3332221 26778889884 22 22 3444
Q ss_pred eEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 181 DAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 181 D~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
=++++-+++.+++.++ ..++|..|...+.||-.+++...
T Consensus 172 t~~iaEGLl~YL~~~~-v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 172 TLWIAEGLLMYLPEEA-VDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred eEEEeccccccCCHHH-HHHHHHHHHHhCCCCceEEEecc
Confidence 5789999999999866 78999999999999877777653
No 402
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.48 E-value=22 Score=33.79 Aligned_cols=93 Identities=16% Similarity=0.219 Sum_probs=59.0
Q ss_pred hCCCCCCEEEEECCcc-Cccc----ccCCCceEEEEeCCHHHHHHHHHcCCe-EEEe-eCCC-C-----CCCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYL----GLNPDCFFVGCDISPSLIKICVDRGHE-VLVA-DAVN-L-----PYRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~----~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~-d~~~-~-----~~~~~~fD~V~ 184 (377)
+.+.+|+++.=+|+|. |... +.....+++|||+++.-.+.|++-+.. |+.- |... . ...++.+|+-+
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysf 267 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSF 267 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEE
Confidence 4567888999999887 5432 123345999999999999999988543 3211 2322 0 12356666543
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccC-cEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKG-SLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~Lkpg-G~l~i~~ 219 (377)
+.+-+ ..++++.....+.| |.-++.-
T Consensus 268 -----Ec~G~----~~~m~~al~s~h~GwG~sv~iG 294 (375)
T KOG0022|consen 268 -----ECIGN----VSTMRAALESCHKGWGKSVVIG 294 (375)
T ss_pred -----EecCC----HHHHHHHHHHhhcCCCeEEEEE
Confidence 23333 46677777777888 7766553
No 403
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=49.65 E-value=17 Score=35.86 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=37.4
Q ss_pred CCCCCCEEEEECCccCcccc--cCCCceEEEEeCCHHHHHHHHHc
Q 017080 119 SLPSGSLVLDAGCGNGKYLG--LNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
...+|..|.|+-||.|-++. ...++.|++-|+++.++++.+.+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~n 290 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKAN 290 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHh
Confidence 35789999999999999863 36779999999999999998876
No 404
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=49.13 E-value=83 Score=30.25 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=58.8
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP-------YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~-------~~~~~fD~V~~~ 186 (377)
.+.++.+||=.|+|. |..+. ...+. .++++|.++...+.+++.+...+.. ..... .....+|+|+-.
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~-~~~~~~~~~v~~~~~~~~d~vld~ 261 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVIN-PKEEDLVAAIREITGGGVDYALDT 261 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEec-CCCcCHHHHHHHHhCCCCcEEEEC
Confidence 456788999998754 44331 24566 6999999999888887766543322 11110 113458888764
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. .. ...+..+.+.|+++|.++...
T Consensus 262 ~-----g~----~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 262 T-----GV----PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred C-----CC----cHHHHHHHHHhccCCEEEEeC
Confidence 2 11 245778889999999988754
No 405
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=48.75 E-value=1.1e+02 Score=29.36 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=58.9
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCCC--C-----C-CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVN--L-----P-YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~~--~-----~-~~~~~fD~V~ 184 (377)
..+.++.+||-.|+|. |..+. ...+.. |++++.++...+.++..++..+. +... + . .+...+|+++
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv-~~~~~~~~~~l~~~~~~~~vd~vl 256 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTV-NASEDDAVEAVRDLTDGRGADYAF 256 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEe-CCCCccHHHHHHHHcCCCCCCEEE
Confidence 3567788999998753 44321 245665 99999999888887665553322 1111 1 0 1235689887
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
... .. ...+.++.+.|+++|.++....
T Consensus 257 d~~-----~~----~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 257 EAV-----GR----AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred EcC-----CC----hHHHHHHHHHhhcCCeEEEEec
Confidence 532 11 2467788999999999877643
No 406
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=48.58 E-value=31 Score=29.37 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=15.1
Q ss_pred HHHHHHHHHccccCcEEEEEEcC
Q 017080 199 KKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 199 ~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
..+++-+++.|.|||.+++....
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~ 88 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVE 88 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT
T ss_pred HHHHHHHHHHhhhcCeEEEEEec
Confidence 57888899999999999998654
No 407
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=48.21 E-value=35 Score=30.76 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=52.9
Q ss_pred CEEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHH--cCCeEEEeeCCCCC----CCCCceeEEEeccchhhcC
Q 017080 124 SLVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVD--RGHEVLVADAVNLP----YRSDFGDAAISIAVLHHLS 193 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h~~ 193 (377)
++++=+|||. |..+. . ..+..|+.+|.++..++.... .....+++|..+.. ..-..+|++++.- .
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t-----~ 75 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT-----G 75 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee-----C
Confidence 3678899998 66443 2 567899999999999888444 57888999988732 2235688887742 2
Q ss_pred ChHHHHHHHHHHHHc
Q 017080 194 TESRRKKAIEELVRV 208 (377)
Q Consensus 194 ~~~~~~~~l~~~~r~ 208 (377)
+++ ...++..+...
T Consensus 76 ~d~-~N~i~~~la~~ 89 (225)
T COG0569 76 NDE-VNSVLALLALK 89 (225)
T ss_pred CCH-HHHHHHHHHHH
Confidence 222 44555555544
No 408
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=47.96 E-value=9.9 Score=32.83 Aligned_cols=83 Identities=20% Similarity=0.165 Sum_probs=49.7
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccch----hhc
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVL----HHL 192 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l----~h~ 192 (377)
-.|++|.=||+|. |.-.. ..-+++|+++|++..........++ ...+++++ -...|+|+....+ +|+
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~--~~~~l~el---l~~aDiv~~~~plt~~T~~l 108 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV--EYVSLDEL---LAQADIVSLHLPLTPETRGL 108 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE--EESSHHHH---HHH-SEEEE-SSSSTTTTTS
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc--eeeehhhh---cchhhhhhhhhcccccccee
Confidence 3578999999998 76432 2567899999999987763333322 22233332 2346888876554 344
Q ss_pred CChHHHHHHHHHHHHccccCcEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
-+ ++....+|||.+|+
T Consensus 109 i~--------~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 109 IN--------AEFLAKMKPGAVLV 124 (178)
T ss_dssp BS--------HHHHHTSTTTEEEE
T ss_pred ee--------eeeeeccccceEEE
Confidence 44 34567778876433
No 409
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=47.87 E-value=95 Score=29.78 Aligned_cols=91 Identities=13% Similarity=0.042 Sum_probs=53.6
Q ss_pred CCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHH-cCCeEEEeeCCC--CCCCCCceeEEEeccchhhc
Q 017080 120 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVD-RGHEVLVADAVN--LPYRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~--~~~~~~~fD~V~~~~~l~h~ 192 (377)
..++.+||=.|+|. |.++. ...+++++.++.++.....+.+ .+......+... +.-....+|+|+-. +
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~-----~ 252 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDT-----V 252 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEEC-----C
Confidence 35788899887755 44432 2567788989888876655543 354322211111 10001247777653 2
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...+..+.+.|++||.++..-
T Consensus 253 g~----~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 253 PV----FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred Cc----hHHHHHHHHHhccCCEEEEEC
Confidence 22 246777888999999988764
No 410
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=47.26 E-value=24 Score=29.86 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=50.9
Q ss_pred EEEEECCcc-Ccc-cc--cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHH
Q 017080 125 LVLDAGCGN-GKY-LG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (377)
Q Consensus 125 ~vLDiGcG~-G~~-~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~ 200 (377)
+|-=||+|. |.- +. ...+..|++.|.++...+...+.++... .+..++ -...|+|++. +++.+....
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~-~s~~e~---~~~~dvvi~~-----v~~~~~v~~ 73 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVA-DSPAEA---AEQADVVILC-----VPDDDAVEA 73 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEE-SSHHHH---HHHBSEEEE------SSSHHHHHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhh-hhhhhH---hhcccceEee-----cccchhhhh
Confidence 566678876 442 22 2567899999999999888877752222 122221 1234888874 566554677
Q ss_pred HHHH--HHHccccCcEEEEE
Q 017080 201 AIEE--LVRVVKKGSLVLIT 218 (377)
Q Consensus 201 ~l~~--~~r~LkpgG~l~i~ 218 (377)
++.. +...|++|..++-.
T Consensus 74 v~~~~~i~~~l~~g~iiid~ 93 (163)
T PF03446_consen 74 VLFGENILAGLRPGKIIIDM 93 (163)
T ss_dssp HHHCTTHGGGS-TTEEEEE-
T ss_pred hhhhhHHhhccccceEEEec
Confidence 7777 88888887655433
No 411
>PRK08507 prephenate dehydrogenase; Validated
Probab=46.90 E-value=61 Score=29.94 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=47.5
Q ss_pred EEEEECCcc-Cc-cccc----CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHH
Q 017080 125 LVLDAGCGN-GK-YLGL----NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198 (377)
Q Consensus 125 ~vLDiGcG~-G~-~~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~ 198 (377)
+|.=||+|. |. ++.. .....|+++|.++...+.+.+.++.....+..+. .+ .|+|+..- +... .
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~---~~-aD~Vilav-----p~~~-~ 71 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEEL---KK-CDVIFLAI-----PVDA-I 71 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHH---hc-CCEEEEeC-----cHHH-H
Confidence 566788887 44 3221 2234899999999988887765542111122221 12 68888764 3322 4
Q ss_pred HHHHHHHHHccccCcEE
Q 017080 199 KKAIEELVRVVKKGSLV 215 (377)
Q Consensus 199 ~~~l~~~~r~LkpgG~l 215 (377)
..++.++.. ++||..+
T Consensus 72 ~~~~~~l~~-l~~~~iv 87 (275)
T PRK08507 72 IEILPKLLD-IKENTTI 87 (275)
T ss_pred HHHHHHHhc-cCCCCEE
Confidence 567778877 8777543
No 412
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=46.85 E-value=27 Score=32.79 Aligned_cols=35 Identities=11% Similarity=0.266 Sum_probs=25.7
Q ss_pred CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 177 SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 177 ~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+.||+|+.....-|+-. +. +.++++|+|.|++.+
T Consensus 220 ~~~Fd~ifvs~s~vh~L~---p~-----l~~~~a~~A~LvvEt 254 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLK---PE-----LFQALAPDAVLVVET 254 (289)
T ss_pred cCCCCEEEEhhhhHhhcc---hH-----HHHHhCCCCEEEEEc
Confidence 467999988775555444 22 777889999988875
No 413
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=46.79 E-value=1.4e+02 Score=27.24 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=57.4
Q ss_pred hCCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC-CCC------CCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NLP------YRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~~------~~~~~fD~V~~ 185 (377)
..+.++.+||-.||. .|..+. ...++.+++++.++...+.++..++........ +.. .....+|+++.
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~ 214 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYD 214 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEE
Confidence 356678999999983 244332 256778999999998888887665433221111 110 12345888876
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... . ..+..+.+.++++|.++...
T Consensus 215 ~~g-----~-----~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 215 PVG-----G-----DVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred Ccc-----H-----HHHHHHHHhhccCCEEEEEc
Confidence 432 1 24455678889999887654
No 414
>PLN02256 arogenate dehydrogenase
Probab=46.65 E-value=80 Score=29.89 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=50.3
Q ss_pred CCCCEEEEECCcc-Cc-cccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 121 PSGSLVLDAGCGN-GK-YLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~-~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
..+.+|.=||+|. |. ++.. ..+.+|+++|.++. .+.+...++.. ..|..++ .....|+|+..--.. .
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~-~~~~~e~--~~~~aDvVilavp~~-----~ 104 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSF-FRDPDDF--CEEHPDVVLLCTSIL-----S 104 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCee-eCCHHHH--hhCCCCEEEEecCHH-----H
Confidence 3456899999986 44 3321 34568999999974 35555545533 1222211 123468888754322 1
Q ss_pred HHHHHHHHH-HHccccCcEEEEEE
Q 017080 197 RRKKAIEEL-VRVVKKGSLVLITV 219 (377)
Q Consensus 197 ~~~~~l~~~-~r~LkpgG~l~i~~ 219 (377)
...++.++ ...++||. +++..
T Consensus 105 -~~~vl~~l~~~~l~~~~-iviDv 126 (304)
T PLN02256 105 -TEAVLRSLPLQRLKRST-LFVDV 126 (304)
T ss_pred -HHHHHHhhhhhccCCCC-EEEec
Confidence 55677777 55677765 44433
No 415
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=46.61 E-value=83 Score=29.57 Aligned_cols=84 Identities=20% Similarity=0.121 Sum_probs=52.1
Q ss_pred CEEEEECCcc-Cccc-cc--CCC--ceEEEEeCCHHHHHHHHHcCCeEE-EeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 124 SLVLDAGCGN-GKYL-GL--NPD--CFFVGCDISPSLIKICVDRGHEVL-VADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~-~~--~~~--~~v~gvD~s~~~~~~a~~~~~~~~-~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
.+|.=||+|. |... .. ..+ .+|+++|.++...+.+++.++... ..+.... -...|+|+..-....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~---~~~aDvViiavp~~~----- 78 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEA---VKGADLVILCVPVGA----- 78 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHH---hcCCCEEEECCCHHH-----
Confidence 5789999987 5432 21 223 489999999998888876653211 1121111 234698887654332
Q ss_pred HHHHHHHHHHHccccCcEEE
Q 017080 197 RRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 197 ~~~~~l~~~~r~LkpgG~l~ 216 (377)
...+++++...++||..+.
T Consensus 79 -~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 79 -SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred -HHHHHHHHHhhCCCCCEEE
Confidence 3466777888888887554
No 416
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=46.32 E-value=40 Score=33.02 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=72.4
Q ss_pred HHHHHHHHHhh-CcccccccccchHHHHHHHhCCCCCCEEEEECCccCccccc----CCCceEEEEeCCHHHHHHHHHc-
Q 017080 88 KKYVHRVYDAI-APHFSSTRFAKWPKVATFLNSLPSGSLVLDAGCGNGKYLGL----NPDCFFVGCDISPSLIKICVDR- 161 (377)
Q Consensus 88 ~~~~~~~y~~~-a~~y~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~----~~~~~v~gvD~s~~~~~~a~~~- 161 (377)
+...+++|... .+.|.+........+.+-+ .+.++....|+|+|-|..... .....-+|+++....-+.+..+
T Consensus 158 ~~~L~~hYk~~ss~~YGE~~~~ql~si~dEl-~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~ 236 (419)
T KOG3924|consen 158 PAILNQHYKSFSSETYGETQLEQLRSIVDEL-KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNK 236 (419)
T ss_pred HHHHHHhhccccccchhhhhHHHHHHHHHHh-ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHH
Confidence 34445555432 2234433333334444333 357788999999999996432 2333667777665444333322
Q ss_pred ---------------CCeEEEeeCCCCC---CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 162 ---------------GHEVLVADAVNLP---YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 162 ---------------~~~~~~~d~~~~~---~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.++.+.+++.+.. .-....++|+++.+.- +++ ...-+.++..-+++|-+++=..+
T Consensus 237 ~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~F---dp~-L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 237 EEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAF---DPE-LKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred HHHHHHHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccC---CHH-HHHhhHHHHhhCCCcceEecccc
Confidence 2455666665422 1134567888877653 222 44445589999999988766543
No 417
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=46.29 E-value=43 Score=31.48 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=51.8
Q ss_pred EEEEECCcc-Cc-ccc--cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHH
Q 017080 125 LVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (377)
Q Consensus 125 ~vLDiGcG~-G~-~~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~ 200 (377)
+|-=||+|. |. ++. ...+.+|++.|.++...+...+.+.... .+..++......-|+|++. +++. ....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~-~s~~~~~~~~~~~dvIi~~-----vp~~-~~~~ 74 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGV-ANLRELSQRLSAPRVVWVM-----VPHG-IVDA 74 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCccc-CCHHHHHhhcCCCCEEEEE-----cCch-HHHH
Confidence 466788887 44 222 1467799999999998887776543221 1221111011234888775 4443 2567
Q ss_pred HHHHHHHccccCcEEEEE
Q 017080 201 AIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 201 ~l~~~~r~LkpgG~l~i~ 218 (377)
++.++...|++|- +++.
T Consensus 75 v~~~l~~~l~~g~-ivid 91 (298)
T TIGR00872 75 VLEELAPTLEKGD-IVID 91 (298)
T ss_pred HHHHHHhhCCCCC-EEEE
Confidence 8888888898874 4444
No 418
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=46.05 E-value=52 Score=28.16 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=40.1
Q ss_pred CCeE-EEeeCCCCC----CCCCceeEEEeccchhhcC------------ChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 162 GHEV-LVADAVNLP----YRSDFGDAAISIAVLHHLS------------TESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 162 ~~~~-~~~d~~~~~----~~~~~fD~V~~~~~l~h~~------------~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
++.+ .-.|+..+. ...+.||.|+-++. |+. +.+....+++.+..+|+++|.+.|+-..
T Consensus 53 g~~V~~~VDat~l~~~~~~~~~~FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 53 GVTVLHGVDATKLHKHFRLKNQRFDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred CCccccCCCCCcccccccccCCcCCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 5554 345676654 35688999998753 333 1122568899999999999999998654
No 419
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=45.73 E-value=1e+02 Score=29.69 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=60.2
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-------CCCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNL-------PYRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-------~~~~~~fD~V~~~ 186 (377)
.+.++.+||=.|+|. |..+. ...+. .++++|.++...+.+++.+...+ +..+. .+..+.+|+|+-.
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~i~~~~~~~~d~v~d~ 250 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPI--DFSDGDPVEQILGLEPGGVDRAVDC 250 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEe--ccCcccHHHHHHHhhCCCCCEEEEC
Confidence 456788888888864 44331 24565 78899999988888887765332 22211 0122458888775
Q ss_pred cchhhc---CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHL---STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~---~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..-.-. .... ....+.++.+.|+++|.+....
T Consensus 251 ~g~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~g 285 (375)
T cd08282 251 VGYEARDRGGEAQ-PNLVLNQLIRVTRPGGGIGIVG 285 (375)
T ss_pred CCCcccccccccc-hHHHHHHHHHHhhcCcEEEEEe
Confidence 321100 0000 3456888999999999986554
No 420
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=45.30 E-value=1.7e+02 Score=26.49 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=54.0
Q ss_pred CCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCe-EEEeeCCCCC--CCCCceeEEEeccchh
Q 017080 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHE-VLVADAVNLP--YRSDFGDAAISIAVLH 190 (377)
Q Consensus 119 ~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~d~~~~~--~~~~~fD~V~~~~~l~ 190 (377)
.+.++.+||=.|+. .|..+. ...+..++.++.++ ..+.++..++. ++.....+.. ...+.+|+++..
T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~---- 215 (309)
T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDT---- 215 (309)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEEC----
Confidence 46778899988862 244332 25677888888777 66666555532 2211111111 223457887753
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... ..+..+.+.|+++|.++...
T Consensus 216 -~~~-----~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 216 -VGG-----ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred -Cch-----HHHHHHHHHHhcCcEEEEEc
Confidence 222 26677788899999987654
No 421
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=45.19 E-value=1.3e+02 Score=28.23 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=57.4
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCC-ceEEEEeCCHHHHHHHHHcCCeEEEeeCCC----C-C-CCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPD-CFFVGCDISPSLIKICVDRGHEVLVADAVN----L-P-YRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~----~-~-~~~~~fD~V~~~~ 187 (377)
.+.++.+||=.|+|. |..+. ...+ .+|++++-++...+.+++.++..+...-.. + . .+...+|+|+...
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~ 243 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFV 243 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcC
Confidence 456788999999665 33221 2344 789999999988888766555332211111 0 0 1234588887632
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...+.++.+.|+++|.++...
T Consensus 244 -----g~----~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 244 -----GS----DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred -----CC----HHHHHHHHHHhhcCCEEEEEc
Confidence 12 246788889999999988664
No 422
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=45.03 E-value=1.4e+02 Score=28.91 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=57.2
Q ss_pred CCCCCCEEEEECC-cc-Cccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC--------------------C-
Q 017080 119 SLPSGSLVLDAGC-GN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV--------------------N- 172 (377)
Q Consensus 119 ~~~~~~~vLDiGc-G~-G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~--------------------~- 172 (377)
.+.++.+||=.|+ |. |..+ ....++.++.++.++...+.+++.++......-. .
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEA 269 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhcc
Confidence 4567889999997 32 4443 2366788889999999999888776433221100 0
Q ss_pred --C-----C-CCCC-ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 173 --L-----P-YRSD-FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 173 --~-----~-~~~~-~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+ . .... .+|+|+.... . ..+.+..+.++++|.++...
T Consensus 270 ~~~~~~v~~l~~~~~g~d~vid~~g-----~-----~~~~~~~~~l~~~G~~v~~g 315 (393)
T cd08246 270 RRFGKAIWDILGGREDPDIVFEHPG-----R-----ATFPTSVFVCDRGGMVVICA 315 (393)
T ss_pred chHHHHHHHHhCCCCCCeEEEECCc-----h-----HhHHHHHHHhccCCEEEEEc
Confidence 0 0 0112 5788876421 1 34666788999999988764
No 423
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=44.63 E-value=53 Score=28.40 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=50.7
Q ss_pred EEEEECCcc-Ccc-cc--cCCCceEEEEeCCHHHHHHHHHc------------CC-----------eEEEeeCCCCCCCC
Q 017080 125 LVLDAGCGN-GKY-LG--LNPDCFFVGCDISPSLIKICVDR------------GH-----------EVLVADAVNLPYRS 177 (377)
Q Consensus 125 ~vLDiGcG~-G~~-~~--~~~~~~v~gvD~s~~~~~~a~~~------------~~-----------~~~~~d~~~~~~~~ 177 (377)
+|.=||+|+ |.- +. ...|.+|+.+|.++..++.++++ .+ --...|++.+ .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~---~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA---V 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG---C
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH---h
Confidence 356688887 542 21 24589999999999998776654 11 1123343332 2
Q ss_pred CceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 178 DFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
..|+|+=.- .+.+.- ...+++++.+.+.|+-.|.-.+.
T Consensus 78 -~adlViEai-~E~l~~---K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 78 -DADLVIEAI-PEDLEL---KQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp -TESEEEE-S--SSHHH---HHHHHHHHHCCS-TTSEEEE--S
T ss_pred -hhheehhhc-cccHHH---HHHHHHHHHHHhCCCceEEecCC
Confidence 457766532 232222 67899999999999877665543
No 424
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.62 E-value=1.9e+02 Score=26.48 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=57.1
Q ss_pred CCCEEEEECCcc--Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 122 SGSLVLDAGCGN--GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 122 ~~~~vLDiGcG~--G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
++.+||=.|++. |..+. ...++++++++.++...+.+++.++.....+...+ ..+.+|+++.. +..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~vl~~-----~g~-- 202 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSEL--SGAPVDLVVDS-----VGG-- 202 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccc--cCCCceEEEEC-----CCc--
Confidence 488999988843 44331 25677899999999888888776654322222222 23468888764 222
Q ss_pred HHHHHHHHHHHccccCcEEEEEE
Q 017080 197 RRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 197 ~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..+.+..+.|+++|.++...
T Consensus 203 ---~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 203 ---PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ---HHHHHHHHHhcCCCEEEEEe
Confidence 25677899999999988664
No 425
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=44.51 E-value=90 Score=30.00 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=57.6
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCC--C-------CCCCceeEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNL--P-------YRSDFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~--~-------~~~~~fD~V 183 (377)
..+.++.+||=.|+|. |..+. ...+. .+++++.++...+.+++.++.... +..+. . ...+.+|+|
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v-~~~~~~~~~~~~l~~~~~~~~d~v 257 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECI-NPRDQDKPIVEVLTEMTDGGVDYA 257 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeec-ccccccchHHHHHHHHhCCCCcEE
Confidence 3567788999888754 33321 24555 588999999988888766553222 11111 0 113458888
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccc-cCcEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVK-KGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~Lk-pgG~l~i~~ 219 (377)
+... .. ...+....+.|+ ++|.++...
T Consensus 258 id~~-----g~----~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 258 FEVI-----GS----ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred EECC-----CC----HHHHHHHHHHhccCCCEEEEEe
Confidence 7532 12 246777888899 999988764
No 426
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=44.51 E-value=1.7e+02 Score=27.11 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=57.1
Q ss_pred hCCCCCCEEEEECCccCc--ccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGNGK--YLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~G~--~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~ 184 (377)
..+.++.+||=.|.+.|. .+. ...+.+++.++.++...+.++..+..... +..+.. ...+.+|+++
T Consensus 162 ~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i 240 (342)
T cd08266 162 ARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVI-DYRKEDFVREVRELTGKRGVDVVV 240 (342)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEE-ecCChHHHHHHHHHhCCCCCcEEE
Confidence 346678899999986543 322 25677899999998888777655433222 222111 1234688887
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
....- ..+.++.+.++++|.++...
T Consensus 241 ~~~g~----------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 241 EHVGA----------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred ECCcH----------HHHHHHHHHhhcCCEEEEEe
Confidence 65321 24566677889999977764
No 427
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=44.13 E-value=91 Score=29.43 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=56.0
Q ss_pred CCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---CCCCceeEEEeccchhhc
Q 017080 120 LPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---YRSDFGDAAISIAVLHHL 192 (377)
Q Consensus 120 ~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~---~~~~~fD~V~~~~~l~h~ 192 (377)
+.++.+||=.|+|. |..+. ...+.+++.++.++...+.+++.+...+. +..... ...+.+|+|+.. +
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~d~v~~~-----~ 240 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFI-ATKDPEAMKKAAGSLDLIIDT-----V 240 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEe-cCcchhhhhhccCCceEEEEC-----C
Confidence 56777787788754 44321 24577999999999888888765543222 111111 113567888743 2
Q ss_pred CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 193 STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 193 ~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...+..+.+.|+++|.++...
T Consensus 241 g~----~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 241 SA----SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred CC----cchHHHHHHHhcCCCEEEEEe
Confidence 22 124677888999999988764
No 428
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=44.12 E-value=17 Score=31.93 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.2
Q ss_pred HHHHHHHHHHccccCcEEEEEEcC
Q 017080 198 RKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
....+.++.|+|||||.+++..-.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHHhhcCCCeeEEEEecc
Confidence 568899999999999999887543
No 429
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=42.73 E-value=1.7e+02 Score=29.01 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=52.0
Q ss_pred CEEEEECCcc-Cccc-c--cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC----------CC--CCCCceeEEEecc
Q 017080 124 SLVLDAGCGN-GKYL-G--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN----------LP--YRSDFGDAAISIA 187 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~-~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~----------~~--~~~~~fD~V~~~~ 187 (377)
.+|.=||.|. |.-+ . ...+.+|+++|+++..++..+...+.+...+... +. ......|+|+..-
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 4688889887 4422 2 1457899999999998886443222211111100 00 0012357776643
Q ss_pred chh----hcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 188 VLH----HLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 188 ~l~----h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.-. .-+|-.....+++.+...|++|-.+++.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ 118 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILE 118 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEe
Confidence 221 0011122567788899999987666554
No 430
>PLN02702 L-idonate 5-dehydrogenase
Probab=42.27 E-value=1.5e+02 Score=28.43 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=58.0
Q ss_pred hCCCCCCEEEEECCcc-Cccc---ccCCCc-eEEEEeCCHHHHHHHHHcCCeEEEe-eCC--CCC--------CCCCcee
Q 017080 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVA-DAV--NLP--------YRSDFGD 181 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~---~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-d~~--~~~--------~~~~~fD 181 (377)
..+.++.+||=+|+|. |..+ ....++ .++++|.++...+.+++.++..... +.. +++ ...+.+|
T Consensus 177 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 256 (364)
T PLN02702 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGID 256 (364)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCC
Confidence 3566788999998653 3332 123455 5889999988888887766544321 111 110 1134578
Q ss_pred EEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 182 AAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+|+.. ... ...+.+..+.|+++|.++...
T Consensus 257 ~vid~-----~g~----~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 257 VSFDC-----VGF----NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred EEEEC-----CCC----HHHHHHHHHHHhcCCEEEEEc
Confidence 88764 221 246788899999999977654
No 431
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=41.68 E-value=1.8e+02 Score=26.52 Aligned_cols=92 Identities=11% Similarity=0.058 Sum_probs=58.7
Q ss_pred hCCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC-CC-----C-CCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAV-NL-----P-YRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~~-----~-~~~~~fD~V~~ 185 (377)
..+.++.+||=.|+. .|..+. ...++.+++++.++...+.+++.++..+..... .+ . .....+|+++.
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~ 211 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYD 211 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEE
Confidence 356678899999852 344432 256789999999999888887766543322111 11 0 12346898876
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. .. ..+....+.|+++|.++...
T Consensus 212 ~~-----~~-----~~~~~~~~~l~~~g~~v~~g 235 (320)
T cd05286 212 GV-----GK-----DTFEGSLDSLRPRGTLVSFG 235 (320)
T ss_pred CC-----Cc-----HhHHHHHHhhccCcEEEEEe
Confidence 32 22 34566788899999987653
No 432
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=41.64 E-value=42 Score=33.02 Aligned_cols=64 Identities=23% Similarity=0.135 Sum_probs=46.3
Q ss_pred CEEEEECCcc-Ccccc----cCCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCC-C--CCCceeEEEecc
Q 017080 124 SLVLDAGCGN-GKYLG----LNPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLP-Y--RSDFGDAAISIA 187 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~~----~~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~-~--~~~~fD~V~~~~ 187 (377)
.+||=||||. |.... .....+|+..|.|+...+.+... +++..+.|+.+.+ . --..+|+|+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4799999977 65432 23337999999999998888776 5889999998853 1 013458888754
No 433
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=41.53 E-value=1.6e+02 Score=27.65 Aligned_cols=93 Identities=18% Similarity=0.295 Sum_probs=57.8
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cC-CCceEEEEeCCHHHHHHHHHcCCeEEEeeCC--CCC--C--CCCceeEEEec
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LN-PDCFFVGCDISPSLIKICVDRGHEVLVADAV--NLP--Y--RSDFGDAAISI 186 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~--~~~--~--~~~~fD~V~~~ 186 (377)
..+.++.+||=.|+|. |..+. .. .+.++++++.++...+.+++.+++.+...-. +.. + ..+.+|.++..
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~ 237 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVT 237 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEe
Confidence 4567889999999643 33321 22 4889999999999999997766644332211 100 0 01236743322
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. . . ...+.++.+.|+++|.++...
T Consensus 238 ~----~-~----~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 238 A----V-A----KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred C----C-C----HHHHHHHHHhccCCCEEEEEe
Confidence 1 1 1 246788899999999988764
No 434
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=40.71 E-value=80 Score=24.48 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=42.5
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccchhhhhccccchHHHHhhhhCCCCCCcCCCCCCCcccHH
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDKSLVTKWTPLTQKYVEEWIGPGSPRVRSPSARTLESIP 264 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~ 264 (377)
|..+|-|.+.++ ..++|..+....+ |.++++. .+....-. ..+...+++...... ........+.+.
T Consensus 1 ~mDvLIHYp~~d-~~~~l~~La~~t~--~~~ifTf-AP~T~~L~--------~m~~iG~lFP~~dRs-p~i~~~~e~~l~ 67 (97)
T PF07109_consen 1 CMDVLIHYPAED-AAQMLAHLASRTR--GSLIFTF-APRTPLLA--------LMHAIGKLFPRPDRS-PRIYPHREEDLR 67 (97)
T ss_pred CcceEeccCHHH-HHHHHHHHHHhcc--CcEEEEE-CCCCHHHH--------HHHHHhccCCCCCCC-CcEEEeCHHHHH
Confidence 345677777654 7888888887664 5666654 22211111 112222222221111 112345567899
Q ss_pred hHhhcCCCcc
Q 017080 265 ETEDNGSEEQ 274 (377)
Q Consensus 265 ~~l~~aGF~~ 274 (377)
+.+.++||.+
T Consensus 68 ~~l~~~g~~~ 77 (97)
T PF07109_consen 68 RALAAAGWRI 77 (97)
T ss_pred HHHHhCCCee
Confidence 9999999976
No 435
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=40.52 E-value=25 Score=33.17 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=56.6
Q ss_pred HHHhCCCCCCEEEEECCccCcccc-c--CCC-ceEEEEeCCHHHHHHHHHc----CC----eEEEeeCCCCCCCCCceeE
Q 017080 115 TFLNSLPSGSLVLDAGCGNGKYLG-L--NPD-CFFVGCDISPSLIKICVDR----GH----EVLVADAVNLPYRSDFGDA 182 (377)
Q Consensus 115 ~~l~~~~~~~~vLDiGcG~G~~~~-~--~~~-~~v~gvD~s~~~~~~a~~~----~~----~~~~~d~~~~~~~~~~fD~ 182 (377)
+.+..-..+..|+|+=+|-|+|+- . ..+ ..|.++|.+|..++..+.+ ++ ....+|-.. +-++...|-
T Consensus 187 Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~-~~~~~~Adr 265 (351)
T KOG1227|consen 187 RVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN-PKPRLRADR 265 (351)
T ss_pred HhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc-cCccccchh
Confidence 333333566899999999999864 2 333 4899999999999887765 22 233344333 223555666
Q ss_pred EEeccchhhcCChHHHHHHHHHHHHccccCcE
Q 017080 183 AISIAVLHHLSTESRRKKAIEELVRVVKKGSL 214 (377)
Q Consensus 183 V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~ 214 (377)
|.. .-+|+ -++-.--+..+|||.|-
T Consensus 266 VnL----GLlPS---se~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 266 VNL----GLLPS---SEQGWPTAIKALKPEGG 290 (351)
T ss_pred eee----ccccc---cccchHHHHHHhhhcCC
Confidence 654 34555 23444455666776543
No 436
>PRK10083 putative oxidoreductase; Provisional
Probab=40.09 E-value=1.7e+02 Score=27.50 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=56.7
Q ss_pred CCCCCCEEEEECCcc-Ccccc---c-CCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC----CCC--CceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---L-NPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP----YRS--DFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~-~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~----~~~--~~fD~V~~~ 186 (377)
.+.++.+||=.|+|. |..+. . ..++ .++++|.++...+.+++.+++.... ..+.. +.. ..+|+|+..
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~g~~~d~vid~ 235 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVIN-NAQEPLGEALEEKGIKPTLIIDA 235 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEec-CccccHHHHHhcCCCCCCEEEEC
Confidence 567888999999754 43321 1 2366 5888999999998888776643322 11111 111 124566543
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. .. ...+.+..+.|+++|.++...
T Consensus 236 ~-----g~----~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 236 A-----CH----PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred C-----CC----HHHHHHHHHHhhcCCEEEEEc
Confidence 2 22 246788889999999988764
No 437
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=40.02 E-value=1.6e+02 Score=27.65 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=56.4
Q ss_pred CCCCCCEEEEECCcc-Cccc---ccCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC------CCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGN-GKYL---GLNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP------YRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~---~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~------~~~~~fD~V~~~~ 187 (377)
.+.++.+||=.|+|. |..+ ....++ .+++++.++.-...+++.+...+..+-.++. .+.+.+|+|+...
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~ 243 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAV 243 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 456788888887643 3322 125665 7999988887777777665443222211110 1234688887642
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...+.+..+.|+++|.++...
T Consensus 244 -----~~----~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 244 -----GG----AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred -----CC----HHHHHHHHHhcccCCEEEEEC
Confidence 22 246778889999999977654
No 438
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.94 E-value=1.5e+02 Score=26.06 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=56.9
Q ss_pred CCCEEEEECCccCc--cc-cc--CCCceEEEEeCCHHHHHHHHH----c-CCeEEEeeCCCCC-----C-----CCCcee
Q 017080 122 SGSLVLDAGCGNGK--YL-GL--NPDCFFVGCDISPSLIKICVD----R-GHEVLVADAVNLP-----Y-----RSDFGD 181 (377)
Q Consensus 122 ~~~~vLDiGcG~G~--~~-~~--~~~~~v~gvD~s~~~~~~a~~----~-~~~~~~~d~~~~~-----~-----~~~~fD 181 (377)
.+++||=.|++.|. .+ +. ..+.+|++++.++...+...+ . ++.++.+|+.+.. + .-+..|
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 45789999987654 22 21 567899999998876544422 1 4677888887632 0 013467
Q ss_pred EEEeccchhhcCChHH--------------HHHHHHHHHHccccCcEEEEEE
Q 017080 182 AAISIAVLHHLSTESR--------------RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 182 ~V~~~~~l~h~~~~~~--------------~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.++............. +..+++.+...++++|.+++..
T Consensus 84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7766553211111000 2234566666777788776654
No 439
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=39.20 E-value=1.1e+02 Score=27.65 Aligned_cols=85 Identities=8% Similarity=0.041 Sum_probs=50.8
Q ss_pred CCCEEEEECCccCccc------ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 122 SGSLVLDAGCGNGKYL------GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~~------~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
.+.+||=||+|.-..- .......|++-++++.+.+.+....+++...++..-.+ ..+++|++. ..|
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl--~g~~LViaA-----TdD- 95 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFI--KDKHLIVIA-----TDD- 95 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHh--CCCcEEEEC-----CCC-
Confidence 5789999999986542 22333455666888888888776678887766543222 235666664 334
Q ss_pred HHHHHHHHHHHHccccCcEEEE
Q 017080 196 SRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i 217 (377)
..+-+.+++..+.-|.++.
T Consensus 96 ---~~vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 96 ---EKLNNKIRKHCDRLYKLYI 114 (223)
T ss_pred ---HHHHHHHHHHHHHcCCeEE
Confidence 2444445555444344443
No 440
>PRK08324 short chain dehydrogenase; Validated
Probab=38.86 E-value=1.1e+02 Score=32.51 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=59.0
Q ss_pred CCCEEEEECCccCc--cc-c--cCCCceEEEEeCCHHHHHHHHHc-----CCeEEEeeCCCCC-----C-----CCCcee
Q 017080 122 SGSLVLDAGCGNGK--YL-G--LNPDCFFVGCDISPSLIKICVDR-----GHEVLVADAVNLP-----Y-----RSDFGD 181 (377)
Q Consensus 122 ~~~~vLDiGcG~G~--~~-~--~~~~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~-----~-----~~~~fD 181 (377)
++++||=.|++.|. .+ . ...+++|+.+|.++...+.+... ++.++.+|+.+.. + ..+.+|
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD 500 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD 500 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 45789999975544 22 1 14578999999998876655443 4667888886532 1 024689
Q ss_pred EEEeccchhhcCC-----hHH-----------HHHHHHHHHHcccc---CcEEEEEE
Q 017080 182 AAISIAVLHHLST-----ESR-----------RKKAIEELVRVVKK---GSLVLITV 219 (377)
Q Consensus 182 ~V~~~~~l~h~~~-----~~~-----------~~~~l~~~~r~Lkp---gG~l~i~~ 219 (377)
+|+.+........ .+. ...+++.+.+.+++ ||.+++..
T Consensus 501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 9888765322111 010 23456666777766 57766653
No 441
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=38.82 E-value=37 Score=32.07 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.5
Q ss_pred HHHHHHHHHHccccCcEEEEEEcCC
Q 017080 198 RKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
++.+|..+.++|+|||++.+..+..
T Consensus 223 L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 223 LEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHHHHhhCCCcEEEEEEecc
Confidence 7899999999999999999998753
No 442
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=38.47 E-value=38 Score=32.14 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=21.8
Q ss_pred HHHHHHHHHHccccCcEEEEEEcC
Q 017080 198 RKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+..+|..+..+|+|||++++..+.
T Consensus 219 L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 219 LEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecC
Confidence 778999999999999999998875
No 443
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=37.82 E-value=32 Score=32.27 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=44.7
Q ss_pred EEEEECCccCcccc--cCCCc-eEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCC---CCCCceeEEEeccch
Q 017080 125 LVLDAGCGNGKYLG--LNPDC-FFVGCDISPSLIKICVDR-GHEVLVADAVNLP---YRSDFGDAAISIAVL 189 (377)
Q Consensus 125 ~vLDiGcG~G~~~~--~~~~~-~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~---~~~~~fD~V~~~~~l 189 (377)
+++|+=||.|.+.. ...+. .+.++|+++.+.+.-+.+ . ....+|+..+. ++. .+|+++...-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~-~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-EVICGDITEIDPSDLPK-DVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-ccccccccccccccccc-cceEEEeccCC
Confidence 79999999998753 13334 678999999999888877 5 78888998864 443 58999885443
No 444
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=37.77 E-value=1.5e+02 Score=28.06 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=56.0
Q ss_pred CEEEEECCcc-Cccccc---CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC----C----CCCCCCceeEEEeccchhh
Q 017080 124 SLVLDAGCGN-GKYLGL---NPDCFFVGCDISPSLIKICVDRGHEVLVADAV----N----LPYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~----~----~~~~~~~fD~V~~~~~l~h 191 (377)
++|+=+|+|. |.+... ..+..|+.+--++. ++..+++++.+...+-. . .+.....+|+|+..-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v---- 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV---- 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEe----
Confidence 4788899997 654321 23356777666665 77777776655443331 1 112235789988752
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
+..+ ...+++.+...++|...+++.
T Consensus 76 -Ka~q-~~~al~~l~~~~~~~t~vl~l 100 (307)
T COG1893 76 -KAYQ-LEEALPSLAPLLGPNTVVLFL 100 (307)
T ss_pred -cccc-HHHHHHHhhhcCCCCcEEEEE
Confidence 2222 678999999999999876655
No 445
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=37.05 E-value=1.6e+02 Score=27.42 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=56.5
Q ss_pred CCCCEEEEECCcc--Cccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC------CCCCCceeEEEeccch
Q 017080 121 PSGSLVLDAGCGN--GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL------PYRSDFGDAAISIAVL 189 (377)
Q Consensus 121 ~~~~~vLDiGcG~--G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~------~~~~~~fD~V~~~~~l 189 (377)
..+.+||=.|+.. |..+ ....+.+|+.++.++...+.+++.++..+.. ..+. ......+|+|+...
T Consensus 145 ~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~-~~~~~~~~~~~~~~~~~d~vld~~-- 221 (326)
T cd08289 145 PEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIP-REELQEESIKPLEKQRWAGAVDPV-- 221 (326)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEc-chhHHHHHHHhhccCCcCEEEECC--
Confidence 3467899998732 4433 2256778999999999888887766533321 1110 11234578776532
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.. ..+....+.|+++|.++....
T Consensus 222 ---g~-----~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 222 ---GG-----KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred ---cH-----HHHHHHHHHhhcCCEEEEEee
Confidence 12 356778889999999887643
No 446
>PLN03139 formate dehydrogenase; Provisional
Probab=36.82 E-value=44 Score=32.85 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=50.1
Q ss_pred CCCEEEEECCcc-Ccc-ccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 122 SGSLVLDAGCGN-GKY-LGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~-~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
.|++|.=||+|. |.- ++. ..+.+|++.|.++...+.....++.+. .+++++ -...|+|++. +|..++
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~-~~l~el---l~~sDvV~l~-----lPlt~~ 268 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFE-EDLDAM---LPKCDVVVIN-----TPLTEK 268 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceec-CCHHHH---HhhCCEEEEe-----CCCCHH
Confidence 578999999887 653 322 567899999987533333333333321 133332 1335888884 443222
Q ss_pred HHHHH-HHHHHccccCcEEEE
Q 017080 198 RKKAI-EELVRVVKKGSLVLI 217 (377)
Q Consensus 198 ~~~~l-~~~~r~LkpgG~l~i 217 (377)
-..++ +++...+|||.+|+-
T Consensus 269 T~~li~~~~l~~mk~ga~lIN 289 (386)
T PLN03139 269 TRGMFNKERIAKMKKGVLIVN 289 (386)
T ss_pred HHHHhCHHHHhhCCCCeEEEE
Confidence 33333 567788898765443
No 447
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=36.37 E-value=13 Score=28.37 Aligned_cols=12 Identities=42% Similarity=1.032 Sum_probs=10.0
Q ss_pred EEEECCccCccc
Q 017080 126 VLDAGCGNGKYL 137 (377)
Q Consensus 126 vLDiGcG~G~~~ 137 (377)
-+|||||.|...
T Consensus 6 NIDIGcG~GNTm 17 (124)
T PF07101_consen 6 NIDIGCGAGNTM 17 (124)
T ss_pred ccccccCCCcch
Confidence 479999999854
No 448
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=36.28 E-value=1.1e+02 Score=28.73 Aligned_cols=87 Identities=9% Similarity=0.031 Sum_probs=50.6
Q ss_pred EEEEECCcc-Cccc-cc--CCCceEEEEeCCHHHHHHHHHcCCeEEE-ee---------CCCCCCCCCceeEEEeccchh
Q 017080 125 LVLDAGCGN-GKYL-GL--NPDCFFVGCDISPSLIKICVDRGHEVLV-AD---------AVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 125 ~vLDiGcG~-G~~~-~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~d---------~~~~~~~~~~fD~V~~~~~l~ 190 (377)
+|.=||+|. |... .. ..+.+|+.+|.++..++..+..+..... .+ ..+........|+|+..---.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~ 82 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ 82 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH
Confidence 678889887 5532 21 4567899999999888776664211100 00 001100113568877754322
Q ss_pred hcCChHHHHHHHHHHHHccccCcEEEE
Q 017080 191 HLSTESRRKKAIEELVRVVKKGSLVLI 217 (377)
Q Consensus 191 h~~~~~~~~~~l~~~~r~LkpgG~l~i 217 (377)
....++..+...++|+..++.
T Consensus 83 ------~~~~v~~~l~~~~~~~~~vi~ 103 (325)
T PRK00094 83 ------ALREVLKQLKPLLPPDAPIVW 103 (325)
T ss_pred ------HHHHHHHHHHhhcCCCCEEEE
Confidence 156788888888888765443
No 449
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=36.11 E-value=2e+02 Score=28.41 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=54.4
Q ss_pred CCCEEEEECCcc-Cccc-cc--CCCceEEEEeCCHHHHHHHHHc--CCeEEEeeCCCCC----CCCCceeEEEeccchhh
Q 017080 122 SGSLVLDAGCGN-GKYL-GL--NPDCFFVGCDISPSLIKICVDR--GHEVLVADAVNLP----YRSDFGDAAISIAVLHH 191 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~-~~--~~~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~----~~~~~fD~V~~~~~l~h 191 (377)
+..+|+=+|+|. |.-+ +. ..+..|+.+|.++..++..++. ++.++.+|..+.. ..-..+|.|++..
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~---- 305 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALT---- 305 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECC----
Confidence 357899999977 4432 21 4577999999999998887765 5778899987632 2234678777642
Q ss_pred cCChHHHHHHHHHHHHccccC
Q 017080 192 LSTESRRKKAIEELVRVVKKG 212 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~Lkpg 212 (377)
++++ .......+.+.+.+.
T Consensus 306 -~~~~-~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 306 -NDDE-ANILSSLLAKRLGAK 324 (453)
T ss_pred -CCcH-HHHHHHHHHHHhCCC
Confidence 1211 333444455556554
No 450
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=35.98 E-value=1.9e+02 Score=26.98 Aligned_cols=87 Identities=8% Similarity=0.051 Sum_probs=51.8
Q ss_pred CCEEEEE--CCcc-Cccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEe-eCCCCC------CCCCceeEEEeccch
Q 017080 123 GSLVLDA--GCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVA-DAVNLP------YRSDFGDAAISIAVL 189 (377)
Q Consensus 123 ~~~vLDi--GcG~-G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-d~~~~~------~~~~~fD~V~~~~~l 189 (377)
+.++|=+ |+|. |.++ ....++++++++.++...+.+++.+...... +-.++. .....+|+|+..-
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~-- 220 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAV-- 220 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECC--
Confidence 4445444 4443 5443 2366789999999999999888876543322 111110 1224588887532
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ..+....+.|++||.++...
T Consensus 221 ---g~-----~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 221 ---GG-----GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred ---Cc-----HHHHHHHHhhCCCCEEEEEE
Confidence 22 22345677889999987764
No 451
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=35.93 E-value=2.6e+02 Score=25.88 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=58.0
Q ss_pred hCCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC---------CCCCceeEE
Q 017080 118 NSLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP---------YRSDFGDAA 183 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~---------~~~~~fD~V 183 (377)
..+.++.+||=.|++ .|..+. ...++.++.+..++...+.+++.++.... +..... .....+|++
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~ 214 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILI-RYPDEEGFAPKVKKLTGEKGVNLV 214 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEE-ecCChhHHHHHHHHHhCCCCceEE
Confidence 356678899988853 355432 25677777788899988888766653222 111110 123468888
Q ss_pred EeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 184 ISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 184 ~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
+.... . ..+..+.+.|+++|.++...
T Consensus 215 i~~~~-----~-----~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 215 LDCVG-----G-----SYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred EECCc-----h-----HHHHHHHHHhccCCeEEEEe
Confidence 86431 1 46677888999999988654
No 452
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=35.92 E-value=27 Score=33.46 Aligned_cols=32 Identities=34% Similarity=0.503 Sum_probs=23.6
Q ss_pred CEEEEECCccCcc-------c-ccCCCceEEEEeCCHHHH
Q 017080 124 SLVLDAGCGNGKY-------L-GLNPDCFFVGCDISPSLI 155 (377)
Q Consensus 124 ~~vLDiGcG~G~~-------~-~~~~~~~v~gvD~s~~~~ 155 (377)
-.++-.|.|||.- + .+.|+.+|+|+|+....+
T Consensus 213 vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~ 252 (362)
T KOG1252|consen 213 VDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIV 252 (362)
T ss_pred CCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCccee
Confidence 3577778888653 2 248999999999977654
No 453
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=35.56 E-value=1.8e+02 Score=27.36 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=56.9
Q ss_pred CCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEecc
Q 017080 121 PSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAISIA 187 (377)
Q Consensus 121 ~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~~~ 187 (377)
.++.+||-.|+|. |..+. ...+. .++.++.++...+.+++.+.+.+. +..+.+ ...+.+|+|+...
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~d~v~d~~ 240 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAV-NVAKEDLRDVMAELGMTEGFDVGLEMS 240 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEe-cCccccHHHHHHHhcCCCCCCEEEECC
Confidence 4678888877654 44331 24566 688888888888877776654322 222111 1234688887632
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
. . ...+..+.+.|+++|.++....
T Consensus 241 g-----~----~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 241 G-----A----PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred C-----C----HHHHHHHHHHHhcCCEEEEEec
Confidence 1 1 3467778899999999888754
No 454
>PRK08265 short chain dehydrogenase; Provisional
Probab=35.26 E-value=1.2e+02 Score=27.37 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=42.7
Q ss_pred CCCEEEEECCccCcc---ccc--CCCceEEEEeCCHHHHHHHHHc---CCeEEEeeCCCCC-----CC-----CCceeEE
Q 017080 122 SGSLVLDAGCGNGKY---LGL--NPDCFFVGCDISPSLIKICVDR---GHEVLVADAVNLP-----YR-----SDFGDAA 183 (377)
Q Consensus 122 ~~~~vLDiGcG~G~~---~~~--~~~~~v~gvD~s~~~~~~a~~~---~~~~~~~d~~~~~-----~~-----~~~fD~V 183 (377)
.++++|=.|++.|.- +.. ..+++|+.+|.++...+...+. .+.++.+|+.+.. +. -+..|++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l 84 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL 84 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 356899999766552 221 4678999999987654433322 3677888887642 00 1467888
Q ss_pred Eeccc
Q 017080 184 ISIAV 188 (377)
Q Consensus 184 ~~~~~ 188 (377)
+.+..
T Consensus 85 v~~ag 89 (261)
T PRK08265 85 VNLAC 89 (261)
T ss_pred EECCC
Confidence 77654
No 455
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=35.05 E-value=1.6e+02 Score=27.96 Aligned_cols=86 Identities=15% Similarity=0.113 Sum_probs=48.8
Q ss_pred CEEEEECCcc-Cccc-cc--CCCceEEEEeCCHHHHHHHHHcCCeEEEee------------CCCCCCCCCceeEEEecc
Q 017080 124 SLVLDAGCGN-GKYL-GL--NPDCFFVGCDISPSLIKICVDRGHEVLVAD------------AVNLPYRSDFGDAAISIA 187 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~-~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d------------~~~~~~~~~~fD~V~~~~ 187 (377)
++|.=||+|. |... .. ..+.+|+++|.++. .+..++.++.+...+ ....+.....+|+|+..-
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence 4688899997 5533 21 45679999998764 344455444331100 001111124678888753
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVL 216 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~ 216 (377)
+... ...+++.+...++++..++
T Consensus 82 -----k~~~-~~~~~~~l~~~~~~~~iii 104 (341)
T PRK08229 82 -----KSAA-TADAAAALAGHARPGAVVV 104 (341)
T ss_pred -----cCcc-hHHHHHHHHhhCCCCCEEE
Confidence 2222 4577888888888776544
No 456
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=34.89 E-value=30 Score=38.74 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCCEEEEECCcc-Cccccc-CCCceEEEEeCCHHHHHHHH-HcCCeEEEeeCCCCC-CCCCceeEEEeccchhhc--CCh
Q 017080 122 SGSLVLDAGCGN-GKYLGL-NPDCFFVGCDISPSLIKICV-DRGHEVLVADAVNLP-YRSDFGDAAISIAVLHHL--STE 195 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~-~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~d~~~~~-~~~~~fD~V~~~~~l~h~--~~~ 195 (377)
.+..+||+|+|. -+.+.. -+...|+.+|.=|..-.... +..-.|++.|..... .-...+|.+.|...|..- ...
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~a~ 901 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAASAN 901 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHHCT
T ss_pred CcceEEEccCCccceeeeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhhhcCC
Confidence 367999999998 345554 45669999997443210000 012468999987754 345689999999988753 111
Q ss_pred HHHHHHHHHHHHccccCcE
Q 017080 196 SRRKKAIEELVRVVKKGSL 214 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~ 214 (377)
-...+.++.+.+.+++.|.
T Consensus 902 ~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 902 VTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp --HHHHHHHHHHHHHCTT-
T ss_pred CcHHHHHHHHHHHHHhCCc
Confidence 1278899999999988775
No 457
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=34.88 E-value=2.6e+02 Score=25.58 Aligned_cols=92 Identities=12% Similarity=0.095 Sum_probs=52.1
Q ss_pred CCCCCCEEEEECCc--cCccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC--C---CCCCCceeEEEeccc
Q 017080 119 SLPSGSLVLDAGCG--NGKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN--L---PYRSDFGDAAISIAV 188 (377)
Q Consensus 119 ~~~~~~~vLDiGcG--~G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~--~---~~~~~~fD~V~~~~~ 188 (377)
.+.++.+||-.|+. .|..+ ....++++++++.+ ...+.+++.++.... +... + ....+.+|+|+....
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~d~vi~~~~ 217 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRSLGADEVI-DYTTEDFVALTAGGEKYDVIFDAVG 217 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHHcCCCEee-cCCCCCcchhccCCCCCcEEEECCC
Confidence 46788999999973 34443 23567789998854 666666655543222 1111 1 123456898876422
Q ss_pred hhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 189 LHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 189 l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
- . .......+. .|+++|.++....
T Consensus 218 ~----~---~~~~~~~~~-~l~~~g~~i~~g~ 241 (319)
T cd08267 218 N----S---PFSLYRASL-ALKPGGRYVSVGG 241 (319)
T ss_pred c----h---HHHHHHhhh-ccCCCCEEEEecc
Confidence 1 1 112222222 3999999887643
No 458
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=34.53 E-value=37 Score=28.90 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=53.1
Q ss_pred CCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC--------------C------CC-
Q 017080 122 SGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNL--------------P------YR- 176 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~--------------~------~~- 176 (377)
++.+|+=+|.|. |.-+. ...+++++.+|..+...+........++..+...- | |.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 347999999988 54432 25788999999999988888777555554432111 1 00
Q ss_pred -CCceeEEEeccchhhcCChHHHHHHHHHHHHccccCc
Q 017080 177 -SDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGS 213 (377)
Q Consensus 177 -~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG 213 (377)
-..+|+|+......-=.. |.-+-++..+.+|||-
T Consensus 99 ~i~~~d~vI~~~~~~~~~~---P~lvt~~~~~~m~~gs 133 (168)
T PF01262_consen 99 FIAPADIVIGNGLYWGKRA---PRLVTEEMVKSMKPGS 133 (168)
T ss_dssp HHHH-SEEEEHHHBTTSS------SBEHHHHHTSSTTE
T ss_pred HHhhCcEEeeecccCCCCC---CEEEEhHHhhccCCCc
Confidence 135788887554432222 5566677778888764
No 459
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=34.48 E-value=50 Score=33.91 Aligned_cols=86 Identities=16% Similarity=0.063 Sum_probs=49.9
Q ss_pred CCCEEEEECCcc-Ccc-ccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 122 SGSLVLDAGCGN-GKY-LGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~-~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
.|++|.=||.|. |.- +.. .-+.+|+++|++.. .+.+...++... +..++ -...|+|+..-. ..+.
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~--~l~el---l~~aDiV~l~lP-----~t~~ 207 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYIS-PERAAQLGVELV--SLDEL---LARADFITLHTP-----LTPE 207 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEE--cHHHH---HhhCCEEEEccC-----CChH
Confidence 578999999997 663 322 56779999998643 222333344433 33332 134588877433 3221
Q ss_pred HHHHH-HHHHHccccCcEEEEE
Q 017080 198 RKKAI-EELVRVVKKGSLVLIT 218 (377)
Q Consensus 198 ~~~~l-~~~~r~LkpgG~l~i~ 218 (377)
-..++ .+....+|||.+++-.
T Consensus 208 t~~li~~~~l~~mk~ga~lIN~ 229 (526)
T PRK13581 208 TRGLIGAEELAKMKPGVRIINC 229 (526)
T ss_pred hhcCcCHHHHhcCCCCeEEEEC
Confidence 23344 5677778887655543
No 460
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=34.39 E-value=46 Score=31.46 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.2
Q ss_pred HHHHHHHHHHccccCcEEEEEEcCC
Q 017080 198 RKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+..+|..+..+|+|||++++.++..
T Consensus 215 L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 215 LERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCc
Confidence 7789999999999999999988753
No 461
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=34.28 E-value=2.7e+02 Score=27.36 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=25.4
Q ss_pred EEEEECCcc-Ccccc--cCCCceEEEEeCCHHHHHHHHH
Q 017080 125 LVLDAGCGN-GKYLG--LNPDCFFVGCDISPSLIKICVD 160 (377)
Q Consensus 125 ~vLDiGcG~-G~~~~--~~~~~~v~gvD~s~~~~~~a~~ 160 (377)
+|-=||.|. |.-+. ...+.+|+|+|+++..++...+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 455677775 54221 1237899999999999988776
No 462
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.11 E-value=39 Score=32.15 Aligned_cols=64 Identities=13% Similarity=-0.067 Sum_probs=43.6
Q ss_pred EEEECCccCcccc--cCCCceE-EEEeCCHHHHHHHHHcC-CeEEEeeCCCCCCC-CCceeEEEeccch
Q 017080 126 VLDAGCGNGKYLG--LNPDCFF-VGCDISPSLIKICVDRG-HEVLVADAVNLPYR-SDFGDAAISIAVL 189 (377)
Q Consensus 126 vLDiGcG~G~~~~--~~~~~~v-~gvD~s~~~~~~a~~~~-~~~~~~d~~~~~~~-~~~fD~V~~~~~l 189 (377)
|+|+-||.|.+.. ...+.++ .++|+++...+.-+.+. -.+..+|+.++... -..+|+++.....
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCC
Confidence 5899999998753 2445655 57999999998888762 24566788775421 1347998775443
No 463
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=34.04 E-value=1.1e+02 Score=27.87 Aligned_cols=99 Identities=15% Similarity=0.163 Sum_probs=61.9
Q ss_pred HHHHHhCCCCCCEEEEECCc-cCcccc--cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccch
Q 017080 113 VATFLNSLPSGSLVLDAGCG-NGKYLG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 113 ~~~~l~~~~~~~~vLDiGcG-~G~~~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l 189 (377)
+..++.... ..++|=+|.= +|.+.+ ....++|+.+|+.|.+.+.. ..++.|...- .-....+|+|+-.-.+
T Consensus 33 i~~~le~~~-~k~~lI~G~YltG~~iA~~L~~~~eV~lvDI~p~lk~ll-~~~i~F~~~~----~~~~~~~DlIID~TGl 106 (252)
T PF06690_consen 33 IKYWLEGEE-FKQALIFGAYLTGNFIASALSKKCEVTLVDIHPHLKELL-NENIKFMEFR----NGLEGNPDLIIDTTGL 106 (252)
T ss_pred HHHHhcccc-cceEEEEEEEeehHHHHHHhccCceEEEEeCcHHHHHHh-cCCCceeecc----CCCCCCCCEEEECCCC
Confidence 344444322 2388888853 355443 23344999999999998888 4468887321 1124578999998888
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEEEcCCCccch
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 227 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~ 227 (377)
.-+.. ..|+ -+.| ..+++.++.....+.
T Consensus 107 GGv~~-----~~Ls----~~~p-~v~IVEdP~~~~sD~ 134 (252)
T PF06690_consen 107 GGVDP-----DFLS----KFNP-KVFIVEDPKGDGSDK 134 (252)
T ss_pred CCCCH-----HHHh----ccCC-CEEEEECCCccCcch
Confidence 88754 3333 3444 467777776655443
No 464
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=34.04 E-value=2.3e+02 Score=26.55 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=57.6
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCC-C----C--CCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAVN-L----P--YRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~-~----~--~~~~~fD~V~~ 185 (377)
..+.++.+||=.|+|. |..+. ...+. .+++++.++...+.+++.++..+...-.. + . .+...+|+++.
T Consensus 164 ~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~ 243 (345)
T cd08287 164 AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLE 243 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEE
Confidence 3556777777788754 44321 24566 58999988877777776665433222111 0 0 12345788875
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
. ... ...+..+.+.|+++|.+++..
T Consensus 244 ~-----~g~----~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 244 C-----VGT----QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred C-----CCC----HHHHHHHHHhhccCCEEEEec
Confidence 3 222 357888899999999988754
No 465
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.94 E-value=89 Score=27.58 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=60.3
Q ss_pred CCCCEEEEECCc-cCccccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 121 PSGSLVLDAGCG-NGKYLGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 121 ~~~~~vLDiGcG-~G~~~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
..+.+||=+|.= ||.+... ...++|+.+|+.|.|....+.+ ++|... +-+..+.+|+|+-.-.+.-+..
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~-v~Fr~~----~~~~~G~~DlivDlTGlGG~~P--- 114 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNN-VKFRNL----LKFIRGEVDLIVDLTGLGGIEP--- 114 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCC-ccHhhh----cCCCCCceeEEEeccccCCCCH---
Confidence 456799999874 4666543 4478999999999886665544 555543 3455788999999888887754
Q ss_pred HHHHHHHHHHccccCcEEEEEEcCCCc
Q 017080 198 RKKAIEELVRVVKKGSLVLITVWAVEQ 224 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~~~~~~ 224 (377)
.+| +-+.| +.+++.++..+.
T Consensus 115 --e~L----~~fnp-~vfiVEdP~gn~ 134 (254)
T COG4017 115 --EFL----AKFNP-KVFIVEDPKGNV 134 (254)
T ss_pred --HHH----hccCC-ceEEEECCCCCC
Confidence 333 44566 466666666543
No 466
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=33.71 E-value=1e+02 Score=28.91 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=49.0
Q ss_pred EEEEECCcc-Cc-ccc--cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHH
Q 017080 125 LVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (377)
Q Consensus 125 ~vLDiGcG~-G~-~~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~ 200 (377)
+|-=||+|. |. ++. ...+.+|++.|.++...+.+.+.++... .+..++.-.....|+|++. +++.+....
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~-~~~~e~~~~~~~~dvvi~~-----v~~~~~~~~ 75 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGA-DSLEELVAKLPAPRVVWLM-----VPAGEITDA 75 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeec-CCHHHHHhhcCCCCEEEEE-----ecCCcHHHH
Confidence 566688886 44 222 1456789999999988877766554422 1221111000123777664 344322566
Q ss_pred HHHHHHHccccCcEE
Q 017080 201 AIEELVRVVKKGSLV 215 (377)
Q Consensus 201 ~l~~~~r~LkpgG~l 215 (377)
++..+...+++|..+
T Consensus 76 v~~~l~~~l~~g~iv 90 (301)
T PRK09599 76 TIDELAPLLSPGDIV 90 (301)
T ss_pred HHHHHHhhCCCCCEE
Confidence 777888888886533
No 467
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.52 E-value=2e+02 Score=27.63 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=57.3
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCceEEEEeCCHHHHHHHHH-cCCeEEEeeCCCCC-------CCCCceeEEEec
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCFFVGCDISPSLIKICVD-RGHEVLVADAVNLP-------YRSDFGDAAISI 186 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~-------~~~~~fD~V~~~ 186 (377)
.+.||++|-=+|.|- |.++- ..-+.+|+++|-|..--+.+-+ .+.+.++...++.. .-++-.|.|...
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~ 257 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL 257 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec
Confidence 356888888777655 66543 3678899999999855555544 46665554443311 112333433332
Q ss_pred cchhhcCChHHHHHHHHHHHHccccCcEEEEEEcC
Q 017080 187 AVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 187 ~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
. ...+..+.+.||++|.+++.-..
T Consensus 258 ------a-----~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 258 ------A-----EHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred ------c-----ccchHHHHHHhhcCCEEEEEeCc
Confidence 1 24566788899999999887543
No 468
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=33.35 E-value=37 Score=32.30 Aligned_cols=24 Identities=13% Similarity=0.338 Sum_probs=22.0
Q ss_pred HHHHHHHHHHccccCcEEEEEEcC
Q 017080 198 RKKAIEELVRVVKKGSLVLITVWA 221 (377)
Q Consensus 198 ~~~~l~~~~r~LkpgG~l~i~~~~ 221 (377)
+..+|..+..+|+|||++++.++.
T Consensus 220 L~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 220 LERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCcEEEEEEec
Confidence 788999999999999999999875
No 469
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=33.34 E-value=82 Score=30.29 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=51.0
Q ss_pred CCCEEEEECCcc-Cc-ccc--cCCCceEEEEeCC-HHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 122 SGSLVLDAGCGN-GK-YLG--LNPDCFFVGCDIS-PSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~-~~~--~~~~~~v~gvD~s-~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
.+.+|-=||+|. |. ++. ...+.+|+..+.. +...+.+.+.++.. .+..+. -...|+|+.. +|+..
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~--~s~~ea---a~~ADVVvLa-----VPd~~ 85 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEV--LTVAEA---AKWADVIMIL-----LPDEV 85 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCee--CCHHHH---HhcCCEEEEc-----CCHHH
Confidence 467899999998 44 222 1455677765544 44445555555432 232221 2345888874 55544
Q ss_pred HHHHHH-HHHHHccccCcEEEEE
Q 017080 197 RRKKAI-EELVRVVKKGSLVLIT 218 (377)
Q Consensus 197 ~~~~~l-~~~~r~LkpgG~l~i~ 218 (377)
...++ .++...|+||..+.+.
T Consensus 86 -~~~V~~~~I~~~Lk~g~iL~~a 107 (330)
T PRK05479 86 -QAEVYEEEIEPNLKEGAALAFA 107 (330)
T ss_pred -HHHHHHHHHHhcCCCCCEEEEC
Confidence 35666 7788899998777543
No 470
>PLN02688 pyrroline-5-carboxylate reductase
Probab=33.18 E-value=1.4e+02 Score=27.29 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=49.4
Q ss_pred EEEEECCcc-Cc-cccc--CC----CceEEEE-eCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 125 LVLDAGCGN-GK-YLGL--NP----DCFFVGC-DISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 125 ~vLDiGcG~-G~-~~~~--~~----~~~v~gv-D~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
+|.=||||+ |. ++.. .. ..+++++ |.++...+.+.+.++... .+..+. -...|+|+..- ++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~-~~~~e~---~~~aDvVil~v-----~~~ 72 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTA-ASNTEV---VKSSDVIILAV-----KPQ 72 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe-CChHHH---HhcCCEEEEEE-----CcH
Confidence 577789987 54 2221 22 2378888 999888777666565432 122111 12458887753 322
Q ss_pred HHHHHHHHHHHHccccCcEEEEEE
Q 017080 196 SRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
....++..+...++||. ++++.
T Consensus 73 -~~~~vl~~l~~~~~~~~-~iIs~ 94 (266)
T PLN02688 73 -VVKDVLTELRPLLSKDK-LLVSV 94 (266)
T ss_pred -HHHHHHHHHHhhcCCCC-EEEEe
Confidence 26677788877777765 44444
No 471
>PRK07574 formate dehydrogenase; Provisional
Probab=33.14 E-value=75 Score=31.23 Aligned_cols=86 Identities=17% Similarity=0.127 Sum_probs=49.4
Q ss_pred CCCEEEEECCcc-Ccc-ccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 122 SGSLVLDAGCGN-GKY-LGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~-~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
.|++|.=||.|. |.- ++. .-+.+|++.|.++...+.....++... .+++++ -...|+|+....+ ..+
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~-~~l~el---l~~aDvV~l~lPl-----t~~ 261 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYH-VSFDSL---VSVCDVVTIHCPL-----HPE 261 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceec-CCHHHH---hhcCCEEEEcCCC-----CHH
Confidence 578999999997 764 332 567899999987633333322233221 122222 1345888875433 222
Q ss_pred HHHHH-HHHHHccccCcEEE
Q 017080 198 RKKAI-EELVRVVKKGSLVL 216 (377)
Q Consensus 198 ~~~~l-~~~~r~LkpgG~l~ 216 (377)
-..++ ++....+|||.+|+
T Consensus 262 T~~li~~~~l~~mk~ga~lI 281 (385)
T PRK07574 262 TEHLFDADVLSRMKRGSYLV 281 (385)
T ss_pred HHHHhCHHHHhcCCCCcEEE
Confidence 33344 45777889976444
No 472
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=32.69 E-value=1.7e+02 Score=27.51 Aligned_cols=88 Identities=13% Similarity=-0.015 Sum_probs=50.6
Q ss_pred CCEEEEECCcc-Ccccc-c--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC---------CCCCCCCceeEEEeccch
Q 017080 123 GSLVLDAGCGN-GKYLG-L--NPDCFFVGCDISPSLIKICVDRGHEVLVADAV---------NLPYRSDFGDAAISIAVL 189 (377)
Q Consensus 123 ~~~vLDiGcG~-G~~~~-~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~---------~~~~~~~~fD~V~~~~~l 189 (377)
.++|+=||+|. |.+.. . ..+.+|+.+..++ .+..+.+++.+...+-. ..+-..+.+|+|+..-=-
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~ 82 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT 82 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence 35899999987 66432 1 3467888887765 23344444433211110 011113578988775322
Q ss_pred hhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 190 HHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 190 ~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
++ ...+++.+...++|++.++..
T Consensus 83 ~~------~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 83 TA------NALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred CC------hHhHHHHHhhhcCCCCEEEEe
Confidence 21 346777888889999876554
No 473
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=32.64 E-value=47 Score=30.72 Aligned_cols=95 Identities=21% Similarity=0.167 Sum_probs=54.7
Q ss_pred CCCCCEEEEECCccCccccc----C-----CCceEEEEeCCHHHHHH---HHHcC----CeEEEeeCCCCCC---CC---
Q 017080 120 LPSGSLVLDAGCGNGKYLGL----N-----PDCFFVGCDISPSLIKI---CVDRG----HEVLVADAVNLPY---RS--- 177 (377)
Q Consensus 120 ~~~~~~vLDiGcG~G~~~~~----~-----~~~~v~gvD~s~~~~~~---a~~~~----~~~~~~d~~~~~~---~~--- 177 (377)
+.++..++|+|||.|.++.. . +...++.||-...-... .+... +.=+..|+.++.+ +.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~l~~~~~~~~ 95 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLDLSKLPELQN 95 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccchhhcccccC
Confidence 46778999999999997532 2 56789999986543211 11111 3446677777531 11
Q ss_pred -CceeEEEeccchhhcCChHHHHHHHHHHHHccc-------cCcEEEEEE
Q 017080 178 -DFGDAAISIAVLHHLSTESRRKKAIEELVRVVK-------KGSLVLITV 219 (377)
Q Consensus 178 -~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~Lk-------pgG~l~i~~ 219 (377)
..-=++++-+...--.| -.|+-+.+..+ +.|.++...
T Consensus 96 ~~~~vv~isKHLCG~ATD-----laLRcl~~~~~~~~~~~~~~gi~iA~C 140 (259)
T PF05206_consen 96 DEKPVVAISKHLCGAATD-----LALRCLLNSQKLSEGNGSVRGIVIAPC 140 (259)
T ss_pred CCCcEEEEEccccccchh-----HHHHhhccCccccccCCccCeEEEEeC
Confidence 11125555555554444 55666665554 456655543
No 474
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.42 E-value=1.1e+02 Score=28.66 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=28.2
Q ss_pred CEEEEECCcc-Cc-ccc--cCCCceEEEEeCCHHHHHHHHHc
Q 017080 124 SLVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDR 161 (377)
Q Consensus 124 ~~vLDiGcG~-G~-~~~--~~~~~~v~gvD~s~~~~~~a~~~ 161 (377)
.+|-=||+|+ |. ++. ...|..|+.+|.++..++.+.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~ 47 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNR 47 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH
Confidence 4788899987 54 222 25688999999999998875543
No 475
>PRK08655 prephenate dehydrogenase; Provisional
Probab=32.28 E-value=1.2e+02 Score=30.31 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=48.0
Q ss_pred EEEEEC-Ccc-Cccc-cc--CCCceEEEEeCCHHHH-HHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHH
Q 017080 125 LVLDAG-CGN-GKYL-GL--NPDCFFVGCDISPSLI-KICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRR 198 (377)
Q Consensus 125 ~vLDiG-cG~-G~~~-~~--~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~ 198 (377)
+|.=|| +|. |..+ .. ..+.+|+++|.++... +.+.+.++.+. .+.... -...|+|+..-.... .
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~-~~~~e~---~~~aDvVIlavp~~~------~ 71 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYA-NDNIDA---AKDADIVIISVPINV------T 71 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeec-cCHHHH---hccCCEEEEecCHHH------H
Confidence 577786 553 5533 21 4567899999998765 45555455321 121111 234698888654432 3
Q ss_pred HHHHHHHHHccccCcEE
Q 017080 199 KKAIEELVRVVKKGSLV 215 (377)
Q Consensus 199 ~~~l~~~~r~LkpgG~l 215 (377)
..+++++...++||..+
T Consensus 72 ~~vl~~l~~~l~~~~iV 88 (437)
T PRK08655 72 EDVIKEVAPHVKEGSLL 88 (437)
T ss_pred HHHHHHHHhhCCCCCEE
Confidence 56778888888887643
No 476
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=32.23 E-value=2.3e+02 Score=26.61 Aligned_cols=92 Identities=13% Similarity=0.181 Sum_probs=57.9
Q ss_pred CCCCCCEEEEECCcc-Cccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC--CC-----CCCCCceeEEEecc
Q 017080 119 SLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV--NL-----PYRSDFGDAAISIA 187 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~--~~-----~~~~~~fD~V~~~~ 187 (377)
.+.++.+||=.|+|. |..+ ....+..+++++.++...+.+++.++.-+...-. ++ .+..+.+|+++..-
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~ 241 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDAL 241 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcC
Confidence 456788999999653 3332 1256789999999998888887666532221111 11 01122688887642
Q ss_pred chhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 188 VLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 188 ~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. ...+....+.|+++|.++...
T Consensus 242 -----g~----~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 242 -----GI----PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred -----CC----HHHHHHHHHHhhcCCEEEEeC
Confidence 11 246777889999999977653
No 477
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=32.21 E-value=1.1e+02 Score=28.78 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=48.8
Q ss_pred EEEEECCcc-Cc-ccc--cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHHHHH
Q 017080 125 LVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESRRKK 200 (377)
Q Consensus 125 ~vLDiGcG~-G~-~~~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~~~~ 200 (377)
+|-=||+|. |. ++. ...+.+|++.|.++...+.+.+.+.... .+.+++.-.....|+|+.. +++.+....
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~-~s~~~~~~~~~~advVi~~-----vp~~~~~~~ 75 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITAR-HSLEELVSKLEAPRTIWVM-----VPAGEVTES 75 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeec-CCHHHHHHhCCCCCEEEEE-----ecCchHHHH
Confidence 456678886 44 222 1456789999999988777765543321 1222111001124777664 555433567
Q ss_pred HHHHHHHccccCcEE
Q 017080 201 AIEELVRVVKKGSLV 215 (377)
Q Consensus 201 ~l~~~~r~LkpgG~l 215 (377)
++..+...+++|-.+
T Consensus 76 v~~~i~~~l~~g~iv 90 (299)
T PRK12490 76 VIKDLYPLLSPGDIV 90 (299)
T ss_pred HHHHHhccCCCCCEE
Confidence 777888888876543
No 478
>PRK13243 glyoxylate reductase; Reviewed
Probab=31.72 E-value=62 Score=31.06 Aligned_cols=86 Identities=15% Similarity=0.057 Sum_probs=49.1
Q ss_pred CCCEEEEECCcc-Ccc-ccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 122 SGSLVLDAGCGN-GKY-LGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~-~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
.|++|.=||.|. |.- +.. .-+.+|+++|.++.... ....++.+ .+..++ -...|+|+..- |..+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~~--~~l~el---l~~aDiV~l~l-----P~t~~ 217 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAEY--RPLEEL---LRESDFVSLHV-----PLTKE 217 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCEe--cCHHHH---HhhCCEEEEeC-----CCChH
Confidence 578999999998 764 332 45679999998765322 22222221 122221 13458888754 32211
Q ss_pred HHHHH-HHHHHccccCcEEEEE
Q 017080 198 RKKAI-EELVRVVKKGSLVLIT 218 (377)
Q Consensus 198 ~~~~l-~~~~r~LkpgG~l~i~ 218 (377)
-..++ .+....+|||.+++-.
T Consensus 218 T~~~i~~~~~~~mk~ga~lIN~ 239 (333)
T PRK13243 218 TYHMINEERLKLMKPTAILVNT 239 (333)
T ss_pred HhhccCHHHHhcCCCCeEEEEC
Confidence 22333 4677888988655443
No 479
>PLN02712 arogenate dehydrogenase
Probab=31.42 E-value=1.1e+02 Score=32.39 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=50.5
Q ss_pred CCCEEEEECCcc-Ccc-ccc--CCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChHH
Q 017080 122 SGSLVLDAGCGN-GKY-LGL--NPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTESR 197 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~-~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~~ 197 (377)
+..+|.=||+|. |.. +.. ..+.+|+++|.+... +.+.+.++.+ ..|..++ .....|+|+..--.. .
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~-~~d~~e~--~~~~aDvViLavP~~-----~- 120 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSF-FLDPHDL--CERHPDVILLCTSII-----S- 120 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEE-eCCHHHH--hhcCCCEEEEcCCHH-----H-
Confidence 346899999987 553 322 346789999998554 4555555543 2222221 113469988864332 1
Q ss_pred HHHHHHHHH-HccccCcEEEEEE
Q 017080 198 RKKAIEELV-RVVKKGSLVLITV 219 (377)
Q Consensus 198 ~~~~l~~~~-r~LkpgG~l~i~~ 219 (377)
...++.++. ..++||. +++..
T Consensus 121 ~~~vl~~l~~~~l~~g~-iVvDv 142 (667)
T PLN02712 121 TENVLKSLPLQRLKRNT-LFVDV 142 (667)
T ss_pred HHHHHHhhhhhcCCCCe-EEEEC
Confidence 556777765 4577765 44443
No 480
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=30.99 E-value=93 Score=29.44 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=40.3
Q ss_pred CCCEEEEECCcc-Cccccc---C-CCceEEEEeCCHHHH-HHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchh
Q 017080 122 SGSLVLDAGCGN-GKYLGL---N-PDCFFVGCDISPSLI-KICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLH 190 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~---~-~~~~v~gvD~s~~~~-~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~ 190 (377)
++.+|+=+|+|. |..+.. . ....|+.+|.++.-. +.+.+.+.... +..++.-.-...|+|++.-.-.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at~~~ 249 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISATGAP 249 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECCCCC
Confidence 678999999987 654321 2 335899999998754 55555454332 2222111123479999875443
No 481
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=30.89 E-value=1.8e+02 Score=27.04 Aligned_cols=103 Identities=24% Similarity=0.255 Sum_probs=50.4
Q ss_pred HHHHHHHhC----CCCCCEEEEECCccCc-------ccc-cC-CCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCC
Q 017080 111 PKVATFLNS----LPSGSLVLDAGCGNGK-------YLG-LN-PDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRS 177 (377)
Q Consensus 111 ~~~~~~l~~----~~~~~~vLDiGcG~G~-------~~~-~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~ 177 (377)
.++.+++.. ++..+|||-+|.|.-. .++ .. .++.++-.|+.+-. .. ....+.+|...+. ++
T Consensus 46 tQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v----SD-a~~~~~~Dc~t~~-~~ 119 (299)
T PF06460_consen 46 TQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV----SD-ADQSIVGDCRTYM-PP 119 (299)
T ss_dssp HHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----S-SSEEEES-GGGEE-ES
T ss_pred HHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc----cc-cCCceeccccccC-CC
Confidence 344455542 4678999999998743 122 24 45677788874311 00 1234566666543 36
Q ss_pred CceeEEEeccc---hhhc-----CChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 178 DFGDAAISIAV---LHHL-----STESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 178 ~~fD~V~~~~~---l~h~-----~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.+||+|++-.- ..++ ..+.-..-+..-+...|+=||.++|-.
T Consensus 120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKi 169 (299)
T PF06460_consen 120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKI 169 (299)
T ss_dssp S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEe
Confidence 78999999653 1112 111112334455667888999999864
No 482
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=30.38 E-value=2.5e+02 Score=26.31 Aligned_cols=91 Identities=19% Similarity=0.236 Sum_probs=57.2
Q ss_pred CCCCCCEEEEECCcc-Ccccc---cCCCce-EEEEeCCHHHHHHHHHcCCeEEEeeCCCCC--------CCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCGN-GKYLG---LNPDCF-FVGCDISPSLIKICVDRGHEVLVADAVNLP--------YRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG~-G~~~~---~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~--------~~~~~fD~V~~ 185 (377)
.+.++.+||=.|+|. |..+. ...+.. +++++.++...+.+++.++..+. +..+.. .....+|+|+.
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~-~~~~~~~~~~i~~~~~~~~vd~vld 240 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTI-DAAEEDLVEKVRELTDGRGADVVIV 240 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEe-cCCccCHHHHHHHHhCCcCCCEEEE
Confidence 467888999888652 44321 256777 88999999888877665543322 111111 12345898876
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
... . ...+..+.+.|+++|.++...
T Consensus 241 ~~~-----~----~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 241 ATG-----S----PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CCC-----C----hHHHHHHHHHhhcCCEEEEEe
Confidence 422 1 246777788999999987653
No 483
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=29.65 E-value=3.7e+02 Score=24.87 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=56.2
Q ss_pred CCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHH-cCCeEEEeeCCCC-------CCCCCceeEEEe
Q 017080 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVD-RGHEVLVADAVNL-------PYRSDFGDAAIS 185 (377)
Q Consensus 119 ~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~-------~~~~~~fD~V~~ 185 (377)
.+.++.+||=.|+. .|..+. ...++.+++++.++...+.+++ .++..+. +..+. ....+.+|+++.
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~v~~~~~~~~d~vi~ 220 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAI-NYKTPDLAEALKEAAPDGIDVYFD 220 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEE-ecCChhHHHHHHHhccCCceEEEE
Confidence 45678899988842 354432 2567799999999988888876 4442221 11111 011246888875
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
.. . ...+....+.|+++|.++...
T Consensus 221 ~~-----g-----~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 221 NV-----G-----GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred cc-----h-----HHHHHHHHHhcCCCceEEEEe
Confidence 32 1 146778888999999977553
No 484
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=29.64 E-value=3.1e+02 Score=26.40 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=55.4
Q ss_pred hCCCCCCEEEEECCcc-Ccccc---cCCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCC-C--C-----CCCCCceeEEE
Q 017080 118 NSLPSGSLVLDAGCGN-GKYLG---LNPDC-FFVGCDISPSLIKICVDRGHEVLVADAV-N--L-----PYRSDFGDAAI 184 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~~---~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~-~--~-----~~~~~~fD~V~ 184 (377)
..+.++.+||=+|+|. |..+. ...+. +|+.+|.++...+.++..++........ + . .+..+.+|+|+
T Consensus 186 ~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vl 265 (373)
T cd08299 186 AKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSF 265 (373)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEEE
Confidence 4567788999888754 43321 24566 8999999999999987766532221110 0 0 01124588887
Q ss_pred eccchhhcCChHHHHHHHHH-HHHccccCcEEEEEE
Q 017080 185 SIAVLHHLSTESRRKKAIEE-LVRVVKKGSLVLITV 219 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~-~~r~LkpgG~l~i~~ 219 (377)
-.. .. ...+.. +...+++||.++..-
T Consensus 266 d~~-----g~----~~~~~~~~~~~~~~~G~~v~~g 292 (373)
T cd08299 266 EVI-----GR----LDTMKAALASCHEGYGVSVIVG 292 (373)
T ss_pred ECC-----CC----cHHHHHHHHhhccCCCEEEEEc
Confidence 642 11 234555 444456789887764
No 485
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=29.32 E-value=1.5e+02 Score=30.00 Aligned_cols=95 Identities=16% Similarity=0.019 Sum_probs=54.0
Q ss_pred CEEEEECCccCcc-c-----ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCC---------CC----CC--CCceeE
Q 017080 124 SLVLDAGCGNGKY-L-----GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAVN---------LP----YR--SDFGDA 182 (377)
Q Consensus 124 ~~vLDiGcG~G~~-~-----~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~---------~~----~~--~~~fD~ 182 (377)
++|.=||.|...+ + ....+.+|+|+|+++.-++..++....+...++++ +. .. -...|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 4678889988432 2 12346899999999999888765532221111110 10 00 123466
Q ss_pred EEecc-c-h-------hhcCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 183 AISIA-V-L-------HHLSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 183 V~~~~-~-l-------~h~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
++..- + . .+-+|-.....+.+++.+.|++|-.+++.
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ 126 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 65532 1 1 11333334778999999999886655554
No 486
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=28.97 E-value=3.5e+02 Score=24.72 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=57.9
Q ss_pred HhCCCCCCEEEEECCcc-Cccc---ccCCCce-EEEEeCCHHHHHHHHHcCCeEEEee-CCCC------CCCCCceeEEE
Q 017080 117 LNSLPSGSLVLDAGCGN-GKYL---GLNPDCF-FVGCDISPSLIKICVDRGHEVLVAD-AVNL------PYRSDFGDAAI 184 (377)
Q Consensus 117 l~~~~~~~~vLDiGcG~-G~~~---~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~d-~~~~------~~~~~~fD~V~ 184 (377)
...+.++.+||=.|+|. |..+ ....+++ ++.+.-++...+.+++.++..+... -..+ ..+...+|+++
T Consensus 124 ~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vl 203 (312)
T cd08269 124 RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVI 203 (312)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEE
Confidence 34567788888887542 3332 1256777 9999888887777666555332221 1111 01234588887
Q ss_pred eccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 185 SIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 185 ~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.... . ...+....+.|+++|.++....
T Consensus 204 d~~g-----~----~~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 204 EAVG-----H----QWPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred ECCC-----C----HHHHHHHHHHhccCCEEEEEcc
Confidence 6421 1 2467778899999999887643
No 487
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.67 E-value=85 Score=30.00 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=50.0
Q ss_pred CEEEEECCcc-Cc-ccc--cCCCceEEEEeCCHHHHHHHHHc---------CCeEEEee-------CCCCCCCCCceeEE
Q 017080 124 SLVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDR---------GHEVLVAD-------AVNLPYRSDFGDAA 183 (377)
Q Consensus 124 ~~vLDiGcG~-G~-~~~--~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d-------~~~~~~~~~~fD~V 183 (377)
.+|-=||+|+ |. ++. ...|.+|+..|+++..++.++.. ........ ..++.-.-...|+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 5788999997 54 222 26789999999999887665442 00000000 00110001234666
Q ss_pred EeccchhhcCChH-HHHHHHHHHHHccccCcEE
Q 017080 184 ISIAVLHHLSTES-RRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 184 ~~~~~l~h~~~~~-~~~~~l~~~~r~LkpgG~l 215 (377)
+-. ++... -...+++++.+.++|+.+|
T Consensus 88 iEa-----vpE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 88 QES-----APEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred EEC-----CcCCHHHHHHHHHHHHHhCCCCeEE
Confidence 553 33322 1568889999999998633
No 488
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=28.60 E-value=4.7e+02 Score=24.24 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=55.2
Q ss_pred CCEEEEECCc--cCcccc---cCC-CceEEEEeCCHHHHHHHHHcCCeEEEeeCCCC-----CCCCCceeEEEeccchhh
Q 017080 123 GSLVLDAGCG--NGKYLG---LNP-DCFFVGCDISPSLIKICVDRGHEVLVADAVNL-----PYRSDFGDAAISIAVLHH 191 (377)
Q Consensus 123 ~~~vLDiGcG--~G~~~~---~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~-----~~~~~~fD~V~~~~~l~h 191 (377)
+.+||=.|+. .|..+. ... ++.|+++..++...+.+++.++..+...-.++ ....+.+|+|+...
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~---- 224 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLT---- 224 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcC----
Confidence 7899988864 344432 233 88999999988888888766654433211111 02234588887531
Q ss_pred cCChHHHHHHHHHHHHccccCcEEEEE
Q 017080 192 LSTESRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 192 ~~~~~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
.. ...+.+..+.|+++|.++..
T Consensus 225 -~~----~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 225 -HT----DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred -Cc----HHHHHHHHHHhccCCEEEEE
Confidence 11 24577888999999998754
No 489
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=28.32 E-value=1.1e+02 Score=26.97 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=43.4
Q ss_pred CCCEEEEECCcc-Cccccc---CCCceEEEEeCCHHHHHHHHHc-CCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 122 SGSLVLDAGCGN-GKYLGL---NPDCFFVGCDISPSLIKICVDR-GHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~---~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
.|++|+=+|.|. |..+.. ..+++|+++|.++..++...+. +.... +..++. ....|+++-... +++-+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v--~~~~l~--~~~~Dv~vp~A~-~~~I~ 99 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV--APEEIY--SVDADVFAPCAL-GGVIN 99 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE--cchhhc--cccCCEEEeccc-ccccC
Confidence 578999999997 654432 5678999999999887766554 43322 333322 335788874332 44444
No 490
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=28.24 E-value=1.5e+02 Score=31.71 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=56.1
Q ss_pred CEEEEECCcc-Cccc-c--cCCCceEEEEeCCHHHHHHHHHc-----------C-Ce---------EEEeeCCCCCCCCC
Q 017080 124 SLVLDAGCGN-GKYL-G--LNPDCFFVGCDISPSLIKICVDR-----------G-HE---------VLVADAVNLPYRSD 178 (377)
Q Consensus 124 ~~vLDiGcG~-G~~~-~--~~~~~~v~gvD~s~~~~~~a~~~-----------~-~~---------~~~~d~~~~~~~~~ 178 (377)
.+|-=||+|+ |.-. . ...|..|+.+|++++.++.+.++ + ++ -+.... ++. .-.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~-~~~ 391 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SYA-GFD 391 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CHH-Hhc
Confidence 4788999998 5422 1 25688999999999998776543 0 00 011100 110 013
Q ss_pred ceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEE
Q 017080 179 FGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 179 ~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..|+|+=. +.+-+.- ..++++++-++++|+.+|.-.+
T Consensus 392 ~aDlViEa-v~E~l~~---K~~vf~~l~~~~~~~~ilasnT 428 (714)
T TIGR02437 392 NVDIVVEA-VVENPKV---KAAVLAEVEQHVREDAILASNT 428 (714)
T ss_pred CCCEEEEc-CcccHHH---HHHHHHHHHhhCCCCcEEEECC
Confidence 45776654 4454444 6799999999999987655443
No 491
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=28.13 E-value=2.2e+02 Score=26.33 Aligned_cols=88 Identities=19% Similarity=0.287 Sum_probs=53.1
Q ss_pred CEEEEECCcc-Cc-ccc----c--CCCceEEEEeCCHHHHHHHHH-cCCeEEEeeCCCCCCCCCceeEEEeccchhhcCC
Q 017080 124 SLVLDAGCGN-GK-YLG----L--NPDCFFVGCDISPSLIKICVD-RGHEVLVADAVNLPYRSDFGDAAISIAVLHHLST 194 (377)
Q Consensus 124 ~~vLDiGcG~-G~-~~~----~--~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~ 194 (377)
.+|.=||||+ |. ++. . .+..++++.|.++..++.+.+ .++.. ..|..+. -..-|+|+.. +++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~-~~~~~e~---~~~aDiIiLa-----vkP 73 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITI-TTNNNEV---ANSADILILS-----IKP 73 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEE-eCCcHHH---HhhCCEEEEE-----eCh
Confidence 3688899997 44 221 1 134479999999988877654 45432 2222221 1234888765 333
Q ss_pred hHHHHHHHHHHHHccccCcEEEEEEcCC
Q 017080 195 ESRRKKAIEELVRVVKKGSLVLITVWAV 222 (377)
Q Consensus 195 ~~~~~~~l~~~~r~LkpgG~l~i~~~~~ 222 (377)
+....+++++...++++ .++++.-..
T Consensus 74 -~~~~~vl~~l~~~~~~~-~lvISi~AG 99 (272)
T PRK12491 74 -DLYSSVINQIKDQIKND-VIVVTIAAG 99 (272)
T ss_pred -HHHHHHHHHHHHhhcCC-cEEEEeCCC
Confidence 22677888888777664 677776543
No 492
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.85 E-value=2e+02 Score=26.69 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=50.6
Q ss_pred EEEEECCcc-Cc-ccc--cCCCceEEEEeCCHHHHHHHHHc-------CCe---------------E-EEeeCCCCCCCC
Q 017080 125 LVLDAGCGN-GK-YLG--LNPDCFFVGCDISPSLIKICVDR-------GHE---------------V-LVADAVNLPYRS 177 (377)
Q Consensus 125 ~vLDiGcG~-G~-~~~--~~~~~~v~gvD~s~~~~~~a~~~-------~~~---------------~-~~~d~~~~~~~~ 177 (377)
+|.=||+|. |. ++. ...+.+|+.+|.++..++.+.++ ++. . ...+..+ .-
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---~~ 79 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKA---AV 79 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHH---hh
Confidence 678889986 44 222 14578999999999998876542 100 0 1111111 11
Q ss_pred CceeEEEeccchhhcCChHH-HHHHHHHHHHccccCcEEEEEE
Q 017080 178 DFGDAAISIAVLHHLSTESR-RKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 178 ~~fD~V~~~~~l~h~~~~~~-~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
...|+|+.. +++... ...++.++.+.++|+..+.+..
T Consensus 80 ~~aD~Vi~a-----vpe~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 80 ADADLVIEA-----VPEKLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred cCCCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 345777764 333221 3467888888898876554443
No 493
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=27.67 E-value=4e+02 Score=25.87 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=58.1
Q ss_pred CCCCCCEEEEECCc--cCcccc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCC-------------------
Q 017080 119 SLPSGSLVLDAGCG--NGKYLG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLP------------------- 174 (377)
Q Consensus 119 ~~~~~~~vLDiGcG--~G~~~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~------------------- 174 (377)
.+.++.+||=.|+. .|..+. ...+++++.++.++...+.+++.+...+. |....+
T Consensus 186 ~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (398)
T TIGR01751 186 TVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVI-DRNDFGHWGRLPDLNTQAPKEWTKS 264 (398)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEe-cCCCcchhhccccccccccchhhhc
Confidence 45678899999973 244432 25678889999998888888876644332 111100
Q ss_pred -----------CCCCceeEEEeccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 175 -----------YRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 175 -----------~~~~~fD~V~~~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
...+.+|+|+... . ...+....+.|+++|.++....
T Consensus 265 ~~~~~~~~~~~~~~~g~d~vld~~-----g-----~~~~~~~~~~l~~~G~~v~~g~ 311 (398)
T TIGR01751 265 FKRFGKRIRELTGGEDPDIVFEHP-----G-----RATFPTSVFVCRRGGMVVICGG 311 (398)
T ss_pred chhHHHHHHHHcCCCCceEEEECC-----c-----HHHHHHHHHhhccCCEEEEEcc
Confidence 0123478777642 1 1356778888999999887743
No 494
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=27.59 E-value=1.5e+02 Score=28.27 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=50.2
Q ss_pred CCCEEEEECCcc-Cc-ccc--cCCCceEE-EEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 122 SGSLVLDAGCGN-GK-YLG--LNPDCFFV-GCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~-~~~--~~~~~~v~-gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
.+++|.=||+|. |. ++. ...+.+++ +.+.++...+.+.+.++.. .+..+. -...|+|+.. +++..
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~--~s~~ea---~~~ADiVvLa-----Vpp~~ 71 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV--GTVEEA---IPQADLIMNL-----LPDEV 71 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE--CCHHHH---HhcCCEEEEe-----CCcHh
Confidence 357888899997 43 222 13344554 5666655556665555542 222111 2345888874 55542
Q ss_pred HHHHHHHHHHHccccCcEEEEE
Q 017080 197 RRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 197 ~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
....+++++...|++|-.+.+.
T Consensus 72 ~~~~v~~ei~~~l~~g~iVs~a 93 (314)
T TIGR00465 72 QHEVYEAEIQPLLKEGKTLGFS 93 (314)
T ss_pred HHHHHHHHHHhhCCCCcEEEEe
Confidence 2556777888889888544443
No 495
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=27.55 E-value=4.5e+02 Score=24.15 Aligned_cols=93 Identities=12% Similarity=0.202 Sum_probs=57.5
Q ss_pred hCCCCCCEEEEECCcc-Cccc---ccCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCC--CC-----C-CCCCceeEEEe
Q 017080 118 NSLPSGSLVLDAGCGN-GKYL---GLNPDCFFVGCDISPSLIKICVDRGHEVLVADAV--NL-----P-YRSDFGDAAIS 185 (377)
Q Consensus 118 ~~~~~~~~vLDiGcG~-G~~~---~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~--~~-----~-~~~~~fD~V~~ 185 (377)
..+.++.+|+=.|+|. |..+ ....+++++.++.++...+.+++.+......... ++ . .....+|+++.
T Consensus 156 ~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 235 (336)
T cd08276 156 GPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVE 235 (336)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEE
Confidence 3466777877666543 3332 2256788999999998888887665433221111 11 0 12346898886
Q ss_pred ccchhhcCChHHHHHHHHHHHHccccCcEEEEEEc
Q 017080 186 IAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVW 220 (377)
Q Consensus 186 ~~~l~h~~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 220 (377)
.. . ...+..+.+.|+++|.++....
T Consensus 236 ~~-----~-----~~~~~~~~~~l~~~G~~v~~g~ 260 (336)
T cd08276 236 VG-----G-----PGTLAQSIKAVAPGGVISLIGF 260 (336)
T ss_pred CC-----C-----hHHHHHHHHhhcCCCEEEEEcc
Confidence 42 1 1356778899999999887643
No 496
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.50 E-value=1.5e+02 Score=25.81 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=31.5
Q ss_pred CCCCceeEEEeccchhhcCC---------hHHHHHHHHHHHHccccCcEEEEEE
Q 017080 175 YRSDFGDAAISIAVLHHLST---------ESRRKKAIEELVRVVKKGSLVLITV 219 (377)
Q Consensus 175 ~~~~~fD~V~~~~~l~h~~~---------~~~~~~~l~~~~r~LkpgG~l~i~~ 219 (377)
..++..|+|+.+..|+-+.- .+..++++..+..+|+|+-.++..+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 45778899999998876643 1125667777777777876666654
No 497
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=27.34 E-value=2.5e+02 Score=26.81 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=58.0
Q ss_pred CCCEEEEECCcc-Cccccc---CCCc-eEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 122 SGSLVLDAGCGN-GKYLGL---NPDC-FFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~~---~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
.+.+|.=||||+ |..-.. ..|. -++|+-......+.|.+.+..+. +..+. -..-|+|+.. +||..
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~--~v~ea---~k~ADvim~L-----~PDe~ 86 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY--TVEEA---AKRADVVMIL-----LPDEQ 86 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee--cHHHH---hhcCCEEEEe-----Cchhh
Confidence 577999999999 543211 2333 56788777777888888776543 33332 2345888764 67765
Q ss_pred HHHHHHH-HHHHccccCcEEEEE
Q 017080 197 RRKKAIE-ELVRVVKKGSLVLIT 218 (377)
Q Consensus 197 ~~~~~l~-~~~r~LkpgG~l~i~ 218 (377)
+ ..+.+ ++...|+.|-.|.++
T Consensus 87 q-~~vy~~~I~p~Lk~G~aL~Fa 108 (338)
T COG0059 87 Q-KEVYEKEIAPNLKEGAALGFA 108 (338)
T ss_pred H-HHHHHHHhhhhhcCCceEEec
Confidence 4 44555 899999999888886
No 498
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.26 E-value=92 Score=28.98 Aligned_cols=84 Identities=21% Similarity=0.180 Sum_probs=48.8
Q ss_pred CEEEEECCcc-Ccc-cc--cCCCceEEEEeCCHHHHHHHHHc----------CCeE--------------EEeeCCCCCC
Q 017080 124 SLVLDAGCGN-GKY-LG--LNPDCFFVGCDISPSLIKICVDR----------GHEV--------------LVADAVNLPY 175 (377)
Q Consensus 124 ~~vLDiGcG~-G~~-~~--~~~~~~v~gvD~s~~~~~~a~~~----------~~~~--------------~~~d~~~~~~ 175 (377)
.+|.=||+|. |.- +. ...+.+|+.+|+++..++.+.+. +... ...|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~--- 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE--- 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH---
Confidence 3688889987 442 21 24577999999999887776543 0111 1112111
Q ss_pred CCCceeEEEeccchhhcCCh-HHHHHHHHHHHHccccCcEE
Q 017080 176 RSDFGDAAISIAVLHHLSTE-SRRKKAIEELVRVVKKGSLV 215 (377)
Q Consensus 176 ~~~~fD~V~~~~~l~h~~~~-~~~~~~l~~~~r~LkpgG~l 215 (377)
.-...|+|+..- +.. +-...+++++...++++-.+
T Consensus 81 a~~~aDlVieav-----pe~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 81 AVKDADLVIEAV-----PEDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred HhcCCCEEEEec-----cCCHHHHHHHHHHHHhhCCCCCEE
Confidence 013457777653 221 11467788888888777544
No 499
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=27.20 E-value=1.9e+02 Score=23.45 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=43.4
Q ss_pred CCCEEEEECCcc-Ccccc---cCCCceEEEEe-CCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCChH
Q 017080 122 SGSLVLDAGCGN-GKYLG---LNPDCFFVGCD-ISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTES 196 (377)
Q Consensus 122 ~~~~vLDiGcG~-G~~~~---~~~~~~v~gvD-~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~~ 196 (377)
+..+|-=||+|. |..+. ...+..|.++- .|+...+.+...--.....+..+. ....|+++.. ++|+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~---~~~aDlv~ia-----vpDda 80 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEI---LRDADLVFIA-----VPDDA 80 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGG---GCC-SEEEE------S-CCH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccc---cccCCEEEEE-----echHH
Confidence 346888999988 65432 14567888874 444444444433011112233222 3467998885 66754
Q ss_pred HHHHHHHHHHHc--cccCcEEEEEEc
Q 017080 197 RRKKAIEELVRV--VKKGSLVLITVW 220 (377)
Q Consensus 197 ~~~~~l~~~~r~--LkpgG~l~i~~~ 220 (377)
...+.+++... ++|| .+++.+-
T Consensus 81 -I~~va~~La~~~~~~~g-~iVvHtS 104 (127)
T PF10727_consen 81 -IAEVAEQLAQYGAWRPG-QIVVHTS 104 (127)
T ss_dssp -HHHHHHHHHCC--S-TT--EEEES-
T ss_pred -HHHHHHHHHHhccCCCC-cEEEECC
Confidence 56666666665 5554 6666653
No 500
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=27.18 E-value=1.8e+02 Score=24.64 Aligned_cols=88 Identities=19% Similarity=0.267 Sum_probs=39.8
Q ss_pred CCCCEEEEECCccCcc--cc---cCCCceEEEEeCCHHHHHHHHHcCCeEEEeeCCCCCCCCCceeEEEeccchhhcCCh
Q 017080 121 PSGSLVLDAGCGNGKY--LG---LNPDCFFVGCDISPSLIKICVDRGHEVLVADAVNLPYRSDFGDAAISIAVLHHLSTE 195 (377)
Q Consensus 121 ~~~~~vLDiGcG~G~~--~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~V~~~~~l~h~~~~ 195 (377)
..+.+|.=.|+|.... +. ..+..-...+|.+|.-.-.--+ +...-+.+-+.+ .....|+|+.... .|
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~P-Gt~ipI~~p~~l--~~~~pd~vivlaw-~y---- 137 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLP-GTHIPIVSPEEL--KERKPDYVIVLAW-NY---- 137 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-T-TT--EEEEGGG----SS--SEEEES-G-GG----
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccC-CCCCeECCHHHH--hhCCCCEEEEcCh-hh----
Confidence 3678999999998552 22 2233345677876631100000 222333333333 2455688777442 22
Q ss_pred HHHHHHHHHHHHccccCcEEEEE
Q 017080 196 SRRKKAIEELVRVVKKGSLVLIT 218 (377)
Q Consensus 196 ~~~~~~l~~~~r~LkpgG~l~i~ 218 (377)
...+++.+...++.||.+++.
T Consensus 138 --~~EI~~~~~~~~~~gg~fi~p 158 (160)
T PF08484_consen 138 --KDEIIEKLREYLERGGKFIVP 158 (160)
T ss_dssp --HHHHHHHTHHHHHTT-EEEE-
T ss_pred --HHHHHHHHHHHHhcCCEEEEe
Confidence 457888888889999998875
Done!