BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017082
         (377 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile
           Acid Sodium Symporter Asbt
          Length = 323

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 146 LGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLI 205
           LG +M  MGLTL   DF    ++P  V IG +AQ+ I P   ++++  L L A +A G+I
Sbjct: 44  LGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGVI 103

Query: 206 LVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLA 265
           LV CCPGG ASNV TY+++GNVALSV +T+ ST+ + ++TP +  +LAG+++ + AAG+ 
Sbjct: 104 LVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAAGML 163

Query: 266 ISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGA 325
           +S  +          + ++     T K+    PL+ V    L+  + +G     +   G 
Sbjct: 164 MSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGL 223

Query: 326 QLIFPVALLHAA-AFALGYWLSKIS-FGESTSRTISIECGMQ 365
            LIF V +LH    + LG++ +K +       +T++IE GMQ
Sbjct: 224 -LIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKTLTIEVGMQ 264


>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile
           Acid Sodium Symporter Asbt
          Length = 332

 Score =  127 bits (320), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 146 LGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLI 205
           LG +M  MGLTL   DF    ++P  V IG +AQ+ I P   + ++  L L A +A G+I
Sbjct: 49  LGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVI 108

Query: 206 LVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLA 265
           LV CCPGG ASNV TY+++GNVALSV +T+ ST+ + ++TP +  +LAG+++ + AAG+ 
Sbjct: 109 LVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGML 168

Query: 266 ISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGA 325
           +S  +          + ++     T K+    PL+ V    L+  + +G     +   G 
Sbjct: 169 MSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESG- 227

Query: 326 QLIFPVALLHAA-AFALGYWLSKIS-FGESTSRTISIECGMQ 365
            LIF V +LH    + LG++ +K +       + ++IE GMQ
Sbjct: 228 LLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQ 269


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,266,482
Number of Sequences: 62578
Number of extensions: 329206
Number of successful extensions: 786
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 3
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)