Query 017082
Match_columns 377
No_of_seqs 220 out of 1650
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 9.3E-47 2E-51 366.1 32.3 266 110-376 9-275 (319)
2 TIGR00832 acr3 arsenical-resis 100.0 1.2E-43 2.6E-48 350.2 31.3 271 103-376 2-298 (328)
3 TIGR00841 bass bile acid trans 100.0 1.3E-38 2.7E-43 309.1 27.7 239 135-376 4-247 (286)
4 PF13593 DUF4137: SBF-like CPA 100.0 3.2E-33 7E-38 274.5 29.4 263 114-376 1-278 (313)
5 COG0798 ACR3 Arsenite efflux p 100.0 1.3E-32 2.9E-37 266.8 29.4 276 98-376 5-299 (342)
6 PF01758 SBF: Sodium Bile acid 100.0 5.5E-30 1.2E-34 233.8 18.4 178 143-320 1-184 (187)
7 KOG2718 Na+-bile acid cotransp 100.0 1.7E-29 3.6E-34 250.4 12.8 269 107-375 79-350 (371)
8 TIGR00946 2a69 he Auxin Efflux 99.3 8.9E-11 1.9E-15 115.6 16.5 143 107-252 175-320 (321)
9 PRK09903 putative transporter 99.2 2E-10 4.3E-15 113.0 15.9 144 105-252 164-310 (314)
10 COG0679 Predicted permeases [G 99.1 5.4E-09 1.2E-13 103.0 16.4 146 106-253 160-308 (311)
11 KOG4821 Predicted Na+-dependen 98.9 1.7E-09 3.7E-14 99.7 5.8 186 104-289 12-220 (287)
12 PF03547 Mem_trans: Membrane t 98.9 4.4E-08 9.5E-13 98.2 15.1 142 107-249 237-385 (385)
13 KOG2718 Na+-bile acid cotransp 98.2 1E-06 2.2E-11 88.5 4.0 220 148-373 52-280 (371)
14 PRK12460 2-keto-3-deoxyglucona 97.9 0.00032 6.9E-09 69.0 15.0 223 117-355 16-250 (312)
15 PF05145 AmoA: Putative ammoni 97.6 0.035 7.5E-07 55.2 24.1 134 117-255 3-137 (318)
16 PF03812 KdgT: 2-keto-3-deoxyg 97.4 0.013 2.9E-07 57.6 18.3 170 115-297 14-199 (314)
17 COG3180 AbrB Putative ammonia 97.4 0.063 1.4E-06 53.9 22.5 103 148-254 66-169 (352)
18 PF03601 Cons_hypoth698: Conse 97.0 0.076 1.6E-06 52.6 18.8 136 114-253 27-170 (305)
19 TIGR03082 Gneg_AbrB_dup membra 97.0 0.038 8.2E-07 49.2 15.2 132 115-251 23-155 (156)
20 PRK03562 glutathione-regulated 97.0 0.17 3.8E-06 54.7 22.7 85 140-228 58-144 (621)
21 COG0475 KefB Kef-type K+ trans 96.3 0.91 2E-05 46.5 21.5 159 116-279 33-203 (397)
22 TIGR00793 kdgT 2-keto-3-deoxyg 96.2 0.053 1.1E-06 53.3 11.2 168 117-297 16-199 (314)
23 PRK03659 glutathione-regulated 96.2 0.71 1.5E-05 49.8 20.7 85 140-228 58-144 (601)
24 PRK05326 potassium/proton anti 95.9 2 4.4E-05 45.8 22.6 51 116-167 33-88 (562)
25 TIGR00698 conserved hypothetic 95.7 0.66 1.4E-05 46.5 16.8 135 115-253 33-176 (335)
26 PRK10669 putative cation:proto 95.2 4.4 9.6E-05 43.1 22.3 79 116-198 33-114 (558)
27 TIGR00844 c_cpa1 na(+)/h(+) an 95.2 2.6 5.7E-05 46.9 20.6 55 115-169 40-102 (810)
28 TIGR00932 2a37 transporter, mo 95.2 3 6.5E-05 39.9 23.4 168 116-291 19-196 (273)
29 PRK12460 2-keto-3-deoxyglucona 95.0 0.24 5.3E-06 49.0 10.9 134 116-253 169-304 (312)
30 PRK05274 2-keto-3-deoxyglucona 95.0 0.63 1.4E-05 46.5 13.9 214 117-348 18-249 (326)
31 COG2855 Predicted membrane pro 94.9 1.3 2.7E-05 44.4 15.5 135 115-253 39-179 (334)
32 PF05145 AmoA: Putative ammoni 94.7 1.3 2.8E-05 44.0 15.6 109 141-253 205-314 (318)
33 PF04172 LrgB: LrgB-like famil 94.6 1.1 2.3E-05 42.4 13.6 89 160-253 68-159 (215)
34 PF03977 OAD_beta: Na+-transpo 94.5 6 0.00013 39.7 19.6 100 149-254 75-175 (360)
35 TIGR00659 conserved hypothetic 94.1 1.3 2.7E-05 42.1 13.1 89 160-253 78-169 (226)
36 PRK04288 antiholin-like protei 94.0 2.1 4.6E-05 40.8 14.3 87 162-253 86-175 (232)
37 TIGR03136 malonate_biotin Na+- 93.5 8.1 0.00018 39.3 18.0 100 149-254 111-212 (399)
38 PLN03159 cation/H(+) antiporte 93.4 6.5 0.00014 44.2 19.3 107 140-251 106-224 (832)
39 PRK10711 hypothetical protein; 93.3 0.92 2E-05 43.2 10.7 88 161-253 80-170 (231)
40 COG1346 LrgB Putative effector 92.6 6 0.00013 37.6 14.9 89 160-253 81-172 (230)
41 TIGR01109 Na_pump_decarbB sodi 91.1 13 0.00029 37.2 16.0 100 149-254 69-175 (354)
42 COG3180 AbrB Putative ammonia 90.6 13 0.00028 37.7 15.7 109 141-253 238-347 (352)
43 PRK15477 oxaloacetate decarbox 90.5 19 0.0004 36.8 16.5 98 150-253 141-245 (433)
44 PRK15476 oxaloacetate decarbox 90.5 19 0.00041 36.8 16.5 98 150-253 141-245 (433)
45 PRK15475 oxaloacetate decarbox 90.4 19 0.00042 36.7 16.5 98 150-253 141-245 (433)
46 TIGR00831 a_cpa1 Na+/H+ antipo 90.1 29 0.00062 36.9 24.4 48 118-167 27-77 (525)
47 PF03956 DUF340: Membrane prot 90.1 16 0.00034 33.8 16.1 127 119-252 4-138 (191)
48 PRK03562 glutathione-regulated 88.3 15 0.00032 40.0 15.3 105 140-251 268-378 (621)
49 PF03616 Glt_symporter: Sodium 88.1 33 0.00071 34.9 23.6 173 115-288 33-242 (368)
50 PF03812 KdgT: 2-keto-3-deoxyg 86.6 4 8.7E-05 40.5 8.9 69 121-193 179-247 (314)
51 PRK05274 2-keto-3-deoxyglucona 86.5 1.9 4.2E-05 43.1 6.8 131 118-253 178-312 (326)
52 PF03601 Cons_hypoth698: Conse 86.1 2.4 5.1E-05 42.1 7.2 83 271-359 28-119 (305)
53 TIGR00946 2a69 he Auxin Efflux 85.8 37 0.00081 33.3 21.0 107 118-227 15-128 (321)
54 PF03547 Mem_trans: Membrane t 84.8 9.8 0.00021 38.0 11.1 94 271-368 8-107 (385)
55 TIGR03802 Asp_Ala_antiprt aspa 84.5 18 0.0004 38.8 13.5 76 141-217 59-135 (562)
56 TIGR00793 kdgT 2-keto-3-deoxyg 83.9 7.1 0.00015 38.7 9.2 55 121-178 179-233 (314)
57 PRK03659 glutathione-regulated 83.1 41 0.00088 36.4 15.5 106 140-251 265-375 (601)
58 PF06826 Asp-Al_Ex: Predicted 82.8 37 0.00079 30.8 13.8 107 118-228 28-143 (169)
59 TIGR00210 gltS sodium--glutama 82.3 64 0.0014 33.2 21.5 166 116-287 34-239 (398)
60 PF00999 Na_H_Exchanger: Sodiu 80.7 0.16 3.4E-06 50.8 -3.6 161 118-284 25-198 (380)
61 TIGR03802 Asp_Ala_antiprt aspa 80.7 45 0.00098 35.8 14.7 104 144-250 452-560 (562)
62 COG4651 RosB Kef-type K+ trans 80.6 66 0.0014 32.3 15.7 130 118-253 35-176 (408)
63 PRK04972 putative transporter; 79.7 53 0.0011 35.3 14.8 78 141-219 61-139 (558)
64 PF05982 DUF897: Domain of unk 78.4 78 0.0017 31.8 20.9 228 119-355 5-267 (327)
65 PF05982 DUF897: Domain of unk 78.4 25 0.00054 35.2 10.9 130 100-234 163-302 (327)
66 COG1883 OadB Na+-transporting 78.2 26 0.00056 34.8 10.7 98 150-253 91-189 (375)
67 PRK10669 putative cation:proto 78.1 82 0.0018 33.5 15.7 103 143-251 279-386 (558)
68 KOG2722 Predicted membrane pro 77.6 3.6 7.7E-05 41.8 4.8 140 108-248 241-399 (408)
69 COG1970 MscL Large-conductance 73.9 18 0.0004 31.3 7.5 89 102-194 1-94 (130)
70 TIGR01625 YidE_YbjL_dupl AspT/ 73.9 62 0.0013 28.8 11.3 101 118-224 26-139 (154)
71 PRK03818 putative transporter; 73.9 1.1E+02 0.0024 32.8 15.2 101 117-218 34-139 (552)
72 PRK03818 putative transporter; 73.0 97 0.0021 33.3 14.6 106 143-251 436-548 (552)
73 COG3329 Predicted permease [Ge 72.5 18 0.00038 36.1 8.0 158 49-218 161-324 (372)
74 PRK04972 putative transporter; 69.9 95 0.0021 33.4 13.7 105 143-250 446-555 (558)
75 COG0786 GltS Na+/glutamate sym 68.7 1.5E+02 0.0032 30.7 18.8 170 116-288 36-243 (404)
76 PRK02830 Na(+)-translocating N 67.3 1.1E+02 0.0024 28.6 12.6 74 229-302 41-122 (202)
77 TIGR00840 b_cpa1 sodium/hydrog 65.4 2E+02 0.0044 31.0 19.7 99 118-216 40-151 (559)
78 COG2855 Predicted membrane pro 64.0 21 0.00045 35.9 6.8 47 316-364 84-131 (334)
79 PF06826 Asp-Al_Ex: Predicted 63.3 24 0.00053 31.9 6.5 75 298-374 56-133 (169)
80 PRK01061 Na(+)-translocating N 62.5 1.5E+02 0.0033 28.6 12.6 28 275-302 104-131 (244)
81 PRK12456 Na(+)-translocating N 61.5 1.4E+02 0.0029 28.0 11.2 27 276-302 93-119 (199)
82 TIGR00698 conserved hypothetic 60.9 26 0.00057 35.2 6.9 42 318-359 82-125 (335)
83 COG0679 Predicted permeases [G 60.7 1.7E+02 0.0038 28.7 23.4 251 118-375 14-276 (311)
84 PLN03159 cation/H(+) antiporte 57.8 1.8E+02 0.0038 33.0 13.5 103 143-252 325-436 (832)
85 PRK09903 putative transporter 52.0 2.4E+02 0.0052 27.6 24.4 180 111-295 5-201 (314)
86 TIGR01940 nqrE NADH:ubiquinone 48.9 2.3E+02 0.005 26.5 12.4 27 276-302 95-121 (200)
87 TIGR00832 acr3 arsenical-resis 46.5 2.8E+02 0.006 27.6 11.6 62 175-236 251-312 (328)
88 KOG1307 K+-dependent Ca2+/Na+ 44.4 63 0.0014 34.1 6.6 112 171-285 424-553 (588)
89 PF03956 DUF340: Membrane prot 41.5 35 0.00077 31.5 4.0 85 274-359 3-91 (191)
90 KOG2722 Predicted membrane pro 41.2 48 0.001 33.9 5.1 38 331-368 82-120 (408)
91 TIGR00844 c_cpa1 na(+)/h(+) an 38.8 3E+02 0.0065 31.2 11.2 80 144-223 299-381 (810)
92 PRK13952 mscL large-conductanc 37.5 2.4E+02 0.0052 25.0 8.4 89 102-194 1-109 (142)
93 PRK09796 PTS system cellobiose 37.3 1.4E+02 0.0031 31.5 8.1 33 180-212 158-191 (472)
94 TIGR00927 2A1904 K+-dependent 35.2 1E+02 0.0022 35.5 6.8 75 191-267 960-1041(1096)
95 PRK05326 potassium/proton anti 32.8 4.6E+02 0.0099 28.0 11.3 107 143-253 277-391 (562)
96 PF03390 2HCT: 2-hydroxycarbox 32.5 5.5E+02 0.012 26.8 11.3 136 108-245 265-408 (414)
97 PRK01663 C4-dicarboxylate tran 32.3 2.3E+02 0.0049 29.5 8.7 30 109-138 6-35 (428)
98 PRK13027 C4-dicarboxylate tran 32.0 2.3E+02 0.005 29.4 8.6 31 107-137 3-33 (421)
99 smart00831 Cation_ATPase_N Cat 31.8 1.4E+02 0.0029 21.7 5.2 38 92-129 24-61 (64)
100 TIGR03082 Gneg_AbrB_dup membra 30.4 1.7E+02 0.0037 25.8 6.4 29 327-355 79-108 (156)
101 COG1346 LrgB Putative effector 28.8 4.5E+02 0.0096 25.2 9.1 48 311-358 77-125 (230)
102 PF04346 EutH: Ethanolamine ut 27.6 6.7E+02 0.015 25.6 15.3 32 258-289 162-193 (354)
103 COG0475 KefB Kef-type K+ trans 27.5 6.7E+02 0.015 25.6 14.1 82 140-225 272-354 (397)
104 PF11120 DUF2636: Protein of u 26.6 2E+02 0.0043 21.9 5.1 34 263-296 5-38 (62)
105 PRK09292 Na(+)-translocating N 26.4 5.5E+02 0.012 24.2 13.0 26 277-302 85-110 (209)
106 COG2985 Predicted permease [Ge 25.4 8.6E+02 0.019 26.1 11.2 74 144-218 63-137 (544)
107 TIGR01625 YidE_YbjL_dupl AspT/ 24.9 3E+02 0.0064 24.5 7.0 24 349-374 111-134 (154)
108 PF06181 DUF989: Protein of un 24.1 7.2E+02 0.016 24.7 12.9 175 101-293 80-278 (300)
109 PF05684 DUF819: Protein of un 23.7 7.9E+02 0.017 25.1 24.4 104 140-251 59-167 (378)
110 PRK00567 mscL large-conductanc 23.6 2.5E+02 0.0054 24.6 6.0 86 105-194 2-97 (134)
111 PF00690 Cation_ATPase_N: Cati 23.0 2.1E+02 0.0045 21.2 4.9 35 92-126 34-68 (69)
112 TIGR00841 bass bile acid trans 23.0 6.9E+02 0.015 24.1 12.2 30 181-210 206-235 (286)
113 PRK13954 mscL large-conductanc 22.1 3.4E+02 0.0075 23.3 6.5 86 105-194 2-87 (119)
114 COG3641 PfoR Predicted membran 21.6 5.1E+02 0.011 26.1 8.4 85 171-260 49-133 (348)
115 PRK13953 mscL large-conductanc 21.6 4.7E+02 0.01 22.6 7.3 86 105-194 2-90 (125)
116 PRK09824 PTS system beta-gluco 21.6 4.7E+02 0.01 28.7 9.0 32 180-211 154-186 (627)
117 TIGR00927 2A1904 K+-dependent 21.4 6.8E+02 0.015 29.2 10.2 87 182-271 479-567 (1096)
118 TIGR01943 rnfA electron transp 21.2 6.6E+02 0.014 23.2 13.1 29 276-304 85-113 (190)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=100.00 E-value=9.3e-47 Score=366.11 Aligned_cols=266 Identities=36% Similarity=0.569 Sum_probs=254.4
Q ss_pred HHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 017082 110 EILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFV 189 (377)
Q Consensus 110 ~~l~~~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~ 189 (377)
.+....+++|+++...++...|+.+.|++ .+++.+++++||.+|++++.+|+++..+|||.+++++++||++||+++++
T Consensus 9 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~ 87 (319)
T COG0385 9 RDPFKIFLLWVVLLAAIAPIFPETFGWLG-SAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALL 87 (319)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccchhhh-HHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 45567799999999999999999999997 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHHHH
Q 017082 190 IAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTF 269 (377)
Q Consensus 190 l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~~v~vd~~~i~~~Ll 269 (377)
+++.++++|+++.|+++++|||+|+.||+||+++|||+++|+.++.+||+++++++|+++.++.|+.+++|.++++++++
T Consensus 88 ~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~ 167 (319)
T COG0385 88 LAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSIL 167 (319)
T ss_pred HHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhc-
Q 017082 270 QVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI- 348 (377)
Q Consensus 270 ~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf~lGy~l~r~- 348 (377)
+.+++|+++|+++|+++|++.++.+|.++.++...+.++++...+.+.+...+.+..+.+.+.+++.++|.+||+.+|+
T Consensus 168 ~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~~ 247 (319)
T COG0385 168 LQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGARLL 247 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998888888888888777777777888899999999999999999
Q ss_pred CCCccceeeeeeecccccHHHHHHHHhc
Q 017082 349 SFGESTSRTISIECGMQVCICFVSIFVN 376 (377)
Q Consensus 349 ~~~~~~~rtlsi~~G~qN~~LAl~lA~~ 376 (377)
|+|++|++|+++|+||||.++++++|..
T Consensus 248 g~~~a~~iti~ie~g~qn~~lg~alA~~ 275 (319)
T COG0385 248 GFDKADEITIAIEGGMQNLGLGAALAAA 275 (319)
T ss_pred CCChhheeeEEEeeccccHHHHHHHHHh
Confidence 9999999999999999999999999863
No 2
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=100.00 E-value=1.2e-43 Score=350.20 Aligned_cols=271 Identities=16% Similarity=0.222 Sum_probs=237.2
Q ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHh-------HHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHH
Q 017082 103 SQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETD-------LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIG 175 (377)
Q Consensus 103 ~~~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~~-------~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~ 175 (377)
++.||+. ..++...+++|+++|+..|..+.|++.. ...+.++++||++|++++.+|+++.+||||.+..+
T Consensus 2 ~~~~~~~---~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~ 78 (328)
T TIGR00832 2 SLLERYL---TLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILS 78 (328)
T ss_pred chHHHHH---HHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHH
Confidence 3445554 7788888888999999999998887532 13456778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 017082 176 FLAQYLIKPMLGFVIAMTL-KLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAG 254 (377)
Q Consensus 176 lv~~~vl~Pll~~~l~~~~-~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g 254 (377)
++.||+++|+++|++++++ +++++++.|+++++|||||++||+||+++|||+++|+.+|.++|+++++++|+++.++.|
T Consensus 79 ~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~ 158 (328)
T TIGR00832 79 LFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLG 158 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999975 899999999999999999999999999999999999999999999999999999988876
Q ss_pred --------cccccChHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HHH-HHhhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 017082 255 --------QLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPK-----FTS-KIISVTPLIGVILTTLLCASPIGQVSAVL 320 (377)
Q Consensus 255 --------~~v~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~-----~~~-~i~~~~~~is~l~llvli~~~i~~~~~~l 320 (377)
+.+++|..+++++++.++++|+++|+++|++.++ +.+ +..+..+.++.+.+..+++...+.+.+.+
T Consensus 159 ~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i 238 (328)
T TIGR00832 159 VSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETI 238 (328)
T ss_pred cCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999984 333 66666777777777666677777777777
Q ss_pred hhhchhH---HHHHHHHHHHHHHHHHHHhhc-CCCccceeeeeeecccccHHHHHHHHhc
Q 017082 321 KTQGAQL---IFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQVCICFVSIFVN 376 (377)
Q Consensus 321 ~~~~~~i---~~~~~ll~~~gf~lGy~l~r~-~~~~~~~rtlsi~~G~qN~~LAl~lA~~ 376 (377)
.+.+..+ ..++++++..+|.+||+++|. |++++|+||+++|+|+||+++|+.+|..
T Consensus 239 ~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~ 298 (328)
T TIGR00832 239 IELPLDIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAIS 298 (328)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHH
Confidence 6665433 346778999999999999999 9999999999999999999999999974
No 3
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=100.00 E-value=1.3e-38 Score=309.11 Aligned_cols=239 Identities=44% Similarity=0.649 Sum_probs=219.6
Q ss_pred hhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchh
Q 017082 135 TWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQ 214 (377)
Q Consensus 135 ~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~ 214 (377)
++++ ....+.++++||.+|++++.+|+++.++|||.+..+++.|++++|+++|++++.++++++++.|+++++||||+.
T Consensus 4 ~~~~-~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~ 82 (286)
T TIGR00841 4 TNLS-TILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGT 82 (286)
T ss_pred hhHH-HHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCch
Confidence 3444 445555999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCcccc----cChHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017082 215 ASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVP----VDAAGLAISTFQVVLVPTVVGVLANEFFPKFT 290 (377)
Q Consensus 215 ~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~~v~----vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~~ 290 (377)
++++||+++|||.++++.+++++|+++++++|+++.++.++.++ +|+.+++.+ +.++++|+++|+++|+++|++.
T Consensus 83 ~s~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~ 161 (286)
T TIGR00841 83 ASNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIA 161 (286)
T ss_pred HHHHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999998765444 999999999 9999999999999999999998
Q ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhc-CCCccceeeeeeecccccHHH
Q 017082 291 SKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQVCIC 369 (377)
Q Consensus 291 ~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf~lGy~l~r~-~~~~~~~rtlsi~~G~qN~~L 369 (377)
++.++ .+.++.+.+.++++...+.+.+.+.+..+.++.++++++.++|.+||+.+|. |++++++||+++|+|+||+++
T Consensus 162 ~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~l 240 (286)
T TIGR00841 162 KIILK-VGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQL 240 (286)
T ss_pred HHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHH
Confidence 88888 7888888777777777777878888888888888999999999999999998 999999999999999999999
Q ss_pred HHHHHhc
Q 017082 370 FVSIFVN 376 (377)
Q Consensus 370 Al~lA~~ 376 (377)
|+++|..
T Consensus 241 al~la~~ 247 (286)
T TIGR00841 241 CSTIAQL 247 (286)
T ss_pred HHHHHHH
Confidence 9999863
No 4
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=100.00 E-value=3.2e-33 Score=274.45 Aligned_cols=263 Identities=23% Similarity=0.359 Sum_probs=231.9
Q ss_pred hHHHHHHHHHHHHHHhccchhh---hhh-HhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 017082 114 TLFPVWVILGTIIGIYKPSAVT---WLE-TDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFV 189 (377)
Q Consensus 114 ~~~~l~vilgvllg~~~P~~~~---~l~-~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~ 189 (377)
+||++.+++++++|+..|+.+. +++ +....+++++++|..|++++.+|+++..+|||.+..++..+|+++|+++++
T Consensus 1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999765 343 246678899999999999999999999999999999999999999999999
Q ss_pred HHHHh--CCChhhhhhhhhcccCCchhHHH-HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc-CcccccChHHHH
Q 017082 190 IAMTL--KLSAPLATGLILVSCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA-GQLVPVDAAGLA 265 (377)
Q Consensus 190 l~~~~--~l~~~l~~GliLlaa~P~~~~s~-v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~-g~~v~vd~~~i~ 265 (377)
+..++ ..++++..|+++++|+|++..|+ +||+++|||.+.++..+.++|+++++++|+++.++. ++.+++|..+++
T Consensus 81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~ 160 (313)
T PF13593_consen 81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVL 160 (313)
T ss_pred HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHH
Confidence 99888 46889999999999999998887 699999999999999999999999999999999998 788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhh--hhHHhhhch----hHHHHHHHHHHHHH
Q 017082 266 ISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQV--SAVLKTQGA----QLIFPVALLHAAAF 339 (377)
Q Consensus 266 ~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~--~~~l~~~~~----~i~~~~~ll~~~gf 339 (377)
.++...+++|+++|+++|++++++.+|+++.++.++...++.+++...+.. .+.+.+... .+....+.++...+
T Consensus 161 ~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 240 (313)
T PF13593_consen 161 IKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL 240 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998777776666555443 333332222 23345677888999
Q ss_pred HHHHHHhhc-CCCccceeeeeeecccccHHHHHHHHhc
Q 017082 340 ALGYWLSKI-SFGESTSRTISIECGMQVCICFVSIFVN 376 (377)
Q Consensus 340 ~lGy~l~r~-~~~~~~~rtlsi~~G~qN~~LAl~lA~~ 376 (377)
.++|+.+|. +++++|++++.+.+++||..+++.++..
T Consensus 241 ~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~ 278 (313)
T PF13593_consen 241 VLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLASI 278 (313)
T ss_pred HHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHHH
Confidence 999999999 9999999999999999999999998863
No 5
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=266.84 Aligned_cols=276 Identities=19% Similarity=0.304 Sum_probs=239.1
Q ss_pred CCCCCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhH-------hHHHHHHHHHHHHhcccCChHHHHHHhcCCh
Q 017082 98 SPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLET-------DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPW 170 (377)
Q Consensus 98 ~~~~~~~~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~-------~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk 170 (377)
+.++++++||++ +.|..+++++|+.+|..+|+.++.++. ..+++++.+||+.+.++++++++++..+|+|
T Consensus 5 ~~k~l~~~dk~l---~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k 81 (342)
T COG0798 5 EKKKLSFLDKYL---TLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPK 81 (342)
T ss_pred HhhhhhHHHHHH---HHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcch
Confidence 445688888888 888999999999999999997665542 4778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 017082 171 TVGIGFLAQYLIKPMLGFVIAMTL-KLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLT 249 (377)
Q Consensus 171 ~l~~~lv~~~vl~Pll~~~l~~~~-~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l 249 (377)
.+.++++.|+++.|+++|+++++| +..|++.+|+++++.+||..++.+|+++++||.+++...+.++.++++++.|.+.
T Consensus 82 ~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~ 161 (342)
T COG0798 82 PLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLG 161 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 5677899999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcc-cccChHHHHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHhhhhhHH---HHHHHHHHHHhhhhhhhhH
Q 017082 250 KLLAGQL-VPVDAAGLAISTFQVVLVPTVVGVLANEFFPKF------TSKIISVTPLI---GVILTTLLCASPIGQVSAV 319 (377)
Q Consensus 250 ~ll~g~~-v~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~------~~~i~~~~~~i---s~l~llvli~~~i~~~~~~ 319 (377)
+++.|.. ++++.+++.++++.++.+|+++|++.|++..++ -+++.|..+.+ +.+.+++++++..|+..-.
T Consensus 162 ~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~ 241 (342)
T COG0798 162 KFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVE 241 (342)
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHh
Confidence 9888754 889999999999999999999999999975432 24445554444 4566666677766665444
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHHHHhhc-CCCccceeeeeeecccccHHHHHHHHhc
Q 017082 320 LKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQVCICFVSIFVN 376 (377)
Q Consensus 320 l~~~~~~i~~~~~ll~~~gf~lGy~l~r~-~~~~~~~rtlsi~~G~qN~~LAl~lA~~ 376 (377)
.+.+...+.++..+.....|.++|.++|. |++++++.++++..+.+|..+|+++|..
T Consensus 242 ~p~~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSNnfeLAiAvAi~ 299 (342)
T COG0798 242 QPLDILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASNNFELAIAVAIA 299 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccccHHHHHHHHHH
Confidence 44444566677888889999999999999 9999999999999999999999999865
No 6
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=99.97 E-value=5.5e-30 Score=233.85 Aligned_cols=178 Identities=44% Similarity=0.677 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH-HHhCCChhhhhhhhhcccCCchhHHHHHHH
Q 017082 143 TIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIA-MTLKLSAPLATGLILVSCCPGGQASNVATY 221 (377)
Q Consensus 143 ~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~-~~~~l~~~l~~GliLlaa~P~~~~s~v~t~ 221 (377)
++.++++||++|++++++|+++..||||.+..++++|++++|+++|+++ .+++++++++.|+++++|||||..+++||+
T Consensus 1 ~i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~ 80 (187)
T PF01758_consen 1 PILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTY 80 (187)
T ss_dssp --HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHH
T ss_pred ChhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999 888999999999999999999999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccC---hHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHhhh
Q 017082 222 ISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVD---AAGLAISTFQVVLVPTVVGVLANEFFP--KFTSKIISV 296 (377)
Q Consensus 222 ~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~~v~vd---~~~i~~~Ll~vVllPl~lG~llr~~~p--~~~~~i~~~ 296 (377)
++|||.++++.++.++++++++++|++..++.+...++| .++++.+++.++++|+++|+++|+++| ++.+++++.
T Consensus 81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~~~~ 160 (187)
T PF01758_consen 81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRLKPF 160 (187)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHHHCC
T ss_pred HhCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999999998877777 899999999999999999999999999 888899999
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHH
Q 017082 297 TPLIGVILTTLLCASPIGQVSAVL 320 (377)
Q Consensus 297 ~~~is~l~llvli~~~i~~~~~~l 320 (377)
.+.++.+.+++.+....+.+.+.+
T Consensus 161 ~~~~s~~~l~~~i~~~~~~~~~~i 184 (187)
T PF01758_consen 161 LKPLSFILLLLIIVLIFASNASVI 184 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH---
T ss_pred hhHHHHHHHHHHHHHHHHHhcccc
Confidence 999998888777777677666654
No 7
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.7e-29 Score=250.39 Aligned_cols=269 Identities=40% Similarity=0.579 Sum_probs=241.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc-chhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHH
Q 017082 107 QIIEILTTLFPVWVILGTIIGIYKP-SAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPM 185 (377)
Q Consensus 107 ~~~~~l~~~~~l~vilgvllg~~~P-~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pl 185 (377)
+..+.-.+.+|.......+.....| ..+.|+.....+.++.+.|+++|++.+++++++..+||+.+.+|++.||++||+
T Consensus 79 ~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl 158 (371)
T KOG2718|consen 79 ALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPL 158 (371)
T ss_pred ehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHH
Confidence 3333334567888888888888877 678888777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccChHHH
Q 017082 186 LGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYIS-KGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGL 264 (377)
Q Consensus 186 l~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~a-gGd~aLa~~~t~~stllav~~iPl~l~ll~g~~v~vd~~~i 264 (377)
.+|.+++.+.++...++|.+++.|++++..++..++.. +||+.+++.||.++|+.+++++|++...+.++.++.|..++
T Consensus 159 ~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v 238 (371)
T KOG2718|consen 159 LGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGV 238 (371)
T ss_pred HHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhh
Confidence 99999999999999988888888877777777665555 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHHHH
Q 017082 265 AISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYW 344 (377)
Q Consensus 265 ~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf~lGy~ 344 (377)
..+.++++.+|+.+|.++|+++|+....+.+.++.+++...++.++...+.|.+.+...+++++..+..++++||..||+
T Consensus 239 ~~s~~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~~~~~i~~~~~~l~l~g~l~~Y~ 318 (371)
T KOG2718|consen 239 IASILQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLFFGYQILLLGAALPLAGFLAGYL 318 (371)
T ss_pred hhhhhHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred Hhhc-CCCccceeeeeeecccccHHHHHHHHh
Q 017082 345 LSKI-SFGESTSRTISIECGMQVCICFVSIFV 375 (377)
Q Consensus 345 l~r~-~~~~~~~rtlsi~~G~qN~~LAl~lA~ 375 (377)
.++. +-+..++||+++|+||||+.+++++++
T Consensus 319 ~~~~~~~~~a~~~tisie~g~q~s~~a~~l~t 350 (371)
T KOG2718|consen 319 LSFSPLDDVATARTISIETGMQNSLLALALAT 350 (371)
T ss_pred hhccccchhhhhcchHHHhccchhHHHHHHhh
Confidence 9743 222458999999999999999999886
No 8
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.29 E-value=8.9e-11 Score=115.59 Aligned_cols=143 Identities=19% Similarity=0.209 Sum_probs=119.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHh---ccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHH
Q 017082 107 QIIEILTTLFPVWVILGTIIGIY---KPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIK 183 (377)
Q Consensus 107 ~~~~~l~~~~~l~vilgvllg~~---~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~ 183 (377)
...+.++++...+.++|.++... .|+...-.-+........+.|+..|+.++.++.+ +++|......+.++++.
T Consensus 175 ~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil~ 251 (321)
T TIGR00946 175 VWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLVQ 251 (321)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHHH
Confidence 34555688888888888887765 4654322112455677888899999999887654 34567778888899999
Q ss_pred HHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 017082 184 PMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLL 252 (377)
Q Consensus 184 Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll 252 (377)
|++++++...++++++.....++++++|++..+.++++++|+|.+++...+.+||+++++++|+|+.++
T Consensus 252 P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 252 PAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999998764
No 9
>PRK09903 putative transporter YfdV; Provisional
Probab=99.24 E-value=2e-10 Score=113.02 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=118.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHh---ccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHH
Q 017082 105 YEQIIEILTTLFPVWVILGTIIGIY---KPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYL 181 (377)
Q Consensus 105 ~~~~~~~l~~~~~l~vilgvllg~~---~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~v 181 (377)
++.+.+.++++.....++|+++... .|+...-.-+........+.|+..|+++...+++ .+ +..+...+.+++
T Consensus 164 ~~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~-~~~~~~~~~Kli 239 (314)
T PRK09903 164 LSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FS-AEIAYNTFLKLI 239 (314)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc-HHHHHHHHHHHH
Confidence 3556666788888999999877665 5654332112455667778899999998876643 12 445677788999
Q ss_pred HHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 017082 182 IKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLL 252 (377)
Q Consensus 182 l~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll 252 (377)
+.|++++++...+++++.....+++++++|++..+.+++..+|+|.+++...+.+||+++.+++|+|+.++
T Consensus 240 ~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 240 LMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999999999999999999999999999999999998764
No 10
>COG0679 Predicted permeases [General function prediction only]
Probab=99.06 E-value=5.4e-09 Score=102.97 Aligned_cols=146 Identities=23% Similarity=0.327 Sum_probs=119.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHH---hccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHH
Q 017082 106 EQIIEILTTLFPVWVILGTIIGI---YKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLI 182 (377)
Q Consensus 106 ~~~~~~l~~~~~l~vilgvllg~---~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl 182 (377)
+...+-++++.....++|.++.. ..|+...............+.|+.+|++++.++.++ .+++........++++
T Consensus 160 ~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~--~~~~~~~~~~~~kll~ 237 (311)
T COG0679 160 SVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKG--SKPPIILIALSLKLLL 237 (311)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhcc--ccchhHHHHHHHHHHH
Confidence 33445558888888889988775 467643322224556777888999999999944432 2345666677779999
Q ss_pred HHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082 183 KPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (377)
Q Consensus 183 ~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~ 253 (377)
+|++++++.++++++++....+++++++|++..+.++++++++|.+++...+.+||+++++++|.+..++.
T Consensus 238 ~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~ 308 (311)
T COG0679 238 APLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLL 308 (311)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999887765
No 11
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=98.90 E-value=1.7e-09 Score=99.74 Aligned_cols=186 Identities=23% Similarity=0.289 Sum_probs=138.4
Q ss_pred HHHHHHHHh-hhHHHHHHHHHHHHHHhccchhh---hhhH--hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHH
Q 017082 104 QYEQIIEIL-TTLFPVWVILGTIIGIYKPSAVT---WLET--DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFL 177 (377)
Q Consensus 104 ~~~~~~~~l-~~~~~l~vilgvllg~~~P~~~~---~l~~--~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv 177 (377)
|..|.+|++ +.|+...+.+.+..+.+-|+.+. .++. ....+.++-+++..|++++.|++.....+||..+++++
T Consensus 12 ~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI 91 (287)
T KOG4821|consen 12 WAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILI 91 (287)
T ss_pred HHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHH
Confidence 345666666 58999999999999999887642 2221 12234556678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhC---CChhhhhhhhhcccCCchhHHHH-HHHHcCCChhHHHHH-HHHHHHHHHHHHHHHHHHh
Q 017082 178 AQYLIKPMLGFVIAMTLK---LSAPLATGLILVSCCPGGQASNV-ATYISKGNVALSVLM-TTCSTIGAIVMTPLLTKLL 252 (377)
Q Consensus 178 ~~~vl~Pll~~~l~~~~~---l~~~l~~GliLlaa~P~~~~s~v-~t~~agGd~aLa~~~-t~~stllav~~iPl~l~ll 252 (377)
..+.+.|-..|++..... .++.+..|+.+.+|+|++..|++ .|..+|||...+... ...+.+.+....|-....+
T Consensus 92 ~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~L 171 (287)
T KOG4821|consen 92 LSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQML 171 (287)
T ss_pred HHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999876654 45678999999999999999996 599999998433322 3344555555555555444
Q ss_pred cCc------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 017082 253 AGQ------------LVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKF 289 (377)
Q Consensus 253 ~g~------------~v~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~ 289 (377)
..+ .+..-...++.+....+++|...|...+..+|+-
T Consensus 172 L~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 220 (287)
T KOG4821|consen 172 LNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKG 220 (287)
T ss_pred HccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCc
Confidence 311 1112234566777778889999999999888853
No 12
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.87 E-value=4.4e-08 Score=98.22 Aligned_cols=142 Identities=23% Similarity=0.274 Sum_probs=114.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchh----hhhhH---hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHH
Q 017082 107 QIIEILTTLFPVWVILGTIIGIYKPSAV----TWLET---DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQ 179 (377)
Q Consensus 107 ~~~~~l~~~~~l~vilgvllg~~~P~~~----~~l~~---~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~ 179 (377)
...+.+.++.....++|++++..-|... .++.. ......+.+.||.+|..+.....+... +.+......+.+
T Consensus 237 ~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~-~~~~~~~~~~~r 315 (385)
T PF03547_consen 237 SILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL-GWKPSIIAVLVR 315 (385)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHH
Confidence 3456667888888899999988743322 33332 345667888899999988876544322 234455568889
Q ss_pred HHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 017082 180 YLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLT 249 (377)
Q Consensus 180 ~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l 249 (377)
++++|++++++.+.++++++....+++.+++|++..+.+++.+++.|.+.+...+..+|+++++++|+|+
T Consensus 316 lii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 316 LIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974
No 13
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=98.21 E-value=1e-06 Score=88.47 Aligned_cols=220 Identities=23% Similarity=0.275 Sum_probs=155.3
Q ss_pred HHHHHhcccCChHHHHHHhcCChHHHHHHHHHHH-HHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCC
Q 017082 148 FLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYL-IKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGN 226 (377)
Q Consensus 148 l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~v-l~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd 226 (377)
..|+..|++++.++++++.++++.+...+..++- ++|...+.....+..++..+...+...++|++..+|+++.-.++|
T Consensus 52 ~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~ 131 (371)
T KOG2718|consen 52 FVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLD 131 (371)
T ss_pred HhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCcc
Confidence 6689999999999999999988877778888888 999999999999988888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHhc----CcccccChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHH
Q 017082 227 VALSVLMTTCSTIGAIVMTP-LLTKLLA----GQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIG 301 (377)
Q Consensus 227 ~aLa~~~t~~stllav~~iP-l~l~ll~----g~~v~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is 301 (377)
.+....++.-.+.+++.++| ++++=+. +....+|...-..-++...+.|.-.|..++..+++-...+...+..++
T Consensus 132 ~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~s 211 (371)
T KOG2718|consen 132 MDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTIS 211 (371)
T ss_pred HHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHH
Confidence 99999999988888777777 2222111 222223322212223345678889999998888654445555554444
Q ss_pred HHHHHHHHH-hhhhhhhhHHhhhchhHHHHHHHHHHHH--HHHHHHHhhcCCCccceeeeeeecccccHHHHHHH
Q 017082 302 VILTTLLCA-SPIGQVSAVLKTQGAQLIFPVALLHAAA--FALGYWLSKISFGESTSRTISIECGMQVCICFVSI 373 (377)
Q Consensus 302 ~l~llvli~-~~i~~~~~~l~~~~~~i~~~~~ll~~~g--f~lGy~l~r~~~~~~~~rtlsi~~G~qN~~LAl~l 373 (377)
.+..+.+.- .........+..+..++.. -.+..++ +.+|+.+.++ -.+|+..++.++||.++...+
T Consensus 212 tv~avi~~pl~s~~l~~~l~~~d~~~v~~--s~~~vv~~pl~lG~lL~~~----~~k~t~~i~~~~~~vsv~~t~ 280 (371)
T KOG2718|consen 212 TVLAVILTPLLSILLGRALIPVDALGVIA--SILQVVGLPLALGLLLNKW----FPKRTVAIEPGLPPVSVCLTI 280 (371)
T ss_pred HHHHHHHHHHHHHhhchhhhcccchhhhh--hhhHHhHHHHHHHHHhccc----CccceeeeecCCCchHHHhhh
Confidence 433322211 1111122233333333333 3344455 8899998864 346899999999999987654
No 14
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.91 E-value=0.00032 Score=69.02 Aligned_cols=223 Identities=15% Similarity=0.199 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhccchhhh--hhH----hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 017082 117 PVWVILGTIIGIYKPSAVTW--LET----DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI 190 (377)
Q Consensus 117 ~l~vilgvllg~~~P~~~~~--l~~----~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l 190 (377)
.+=+.+|.++.-++|+.... +.+ .-....+++.+|.+|.+++.++..+.+++-- .-++.++++-=++++++
T Consensus 16 ~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~---~l~~~K~~~~~~~g~~~ 92 (312)
T PRK12460 16 VVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGG---VLTITKLGVAIVIGLLV 92 (312)
T ss_pred HHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhh---hhhhHHHHHHHHHHHHH
Confidence 34456899999999986431 111 1234688899999999999999988887532 22345887777788889
Q ss_pred HHHhCCChhhhh-hhhhcccCCchhHHH--HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccccChHHHH
Q 017082 191 AMTLKLSAPLAT-GLILVSCCPGGQASN--VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ--LVPVDAAGLA 265 (377)
Q Consensus 191 ~~~~~l~~~l~~-GliLlaa~P~~~~s~--v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~--~v~vd~~~i~ 265 (377)
+++++.+.-... .+.+++++--...+- ..+.++|-+.+-... ... ++---|+...+-.|. -.+++...
T Consensus 93 ~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~gA~-~~~----sl~~GPf~tm~aLga~gLA~ip~~~-- 165 (312)
T PRK12460 93 GKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFGDERDVGAI-SIL----SLNDGPFFTMLALGAAGLANIPIMA-- 165 (312)
T ss_pred HHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcCCHhhhhHH-hhh----hhccCcHHHHHHHHHHHHhcCChHH--
Confidence 999987664322 122222222222111 236666655553332 222 223334444333322 12344432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 017082 266 ISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWL 345 (377)
Q Consensus 266 ~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf~lGy~l 345 (377)
+.- .++|+++|++++...+++.+..++-.+. ...+..+. .-..-+.+.+.+.++.-++..++...+.+.++|++
T Consensus 166 --lv~-lilpILiGmilGNld~~~~~~l~~Gi~f-~I~f~~f~--LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i 239 (312)
T PRK12460 166 --LVA-ALLPLVLGMILGNLDPDMRKFLTKGGPL-LIPFFAFA--LGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFA 239 (312)
T ss_pred --HHH-HHHHHHHHHHHhccchhhHHHHhccceE-eHHHHHHH--hcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 222 7899999999999887776666665433 11111111 11223445666677766666666677889999999
Q ss_pred hhc-CCCccce
Q 017082 346 SKI-SFGESTS 355 (377)
Q Consensus 346 ~r~-~~~~~~~ 355 (377)
+|+ |.+++..
T Consensus 240 ~rllg~~~~~g 250 (312)
T PRK12460 240 DRLVGGTGIAG 250 (312)
T ss_pred HHHhCCChhHH
Confidence 998 6555443
No 15
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.60 E-value=0.035 Score=55.17 Aligned_cols=134 Identities=15% Similarity=0.163 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 017082 117 PVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKL 196 (377)
Q Consensus 117 ~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l 196 (377)
...++...+.+...|....+= +..-.....++=..+|.+++.+.+.+....+..+....+.-.+..-+.+|.+.+..+.
T Consensus 3 lG~~ia~~~~~~~~~~~~~~p-~~~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~ 81 (318)
T PF05145_consen 3 LGPMIAVIIAALFGPLPLRVP-RRLRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGL 81 (318)
T ss_pred hHHHHHHHHHHHhCCCccCCC-HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555555565543221111 1222444444455779999999999888777666666666676777778888887776
Q ss_pred ChhhhhhhhhcccCCchhHHH-HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 017082 197 SAPLATGLILVSCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ 255 (377)
Q Consensus 197 ~~~l~~GliLlaa~P~~~~s~-v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~ 255 (377)
|.. --++++.|+|...- ++++..|+|.........+=-+.-++++|+...++.+.
T Consensus 82 d~~----TA~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~ 137 (318)
T PF05145_consen 82 DRA----TAFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPFIASLLGGG 137 (318)
T ss_pred Chh----HHHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 644 34688999998887 57999999999999999999999999999999887753
No 16
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.44 E-value=0.013 Score=57.63 Aligned_cols=170 Identities=17% Similarity=0.330 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHhccchhhhhh---H---hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 017082 115 LFPVWVILGTIIGIYKPSAVTWLE---T---DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGF 188 (377)
Q Consensus 115 ~~~l~vilgvllg~~~P~~~~~l~---~---~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~ 188 (377)
.+.+=+++|.++.-++|+..+.+. + .-....+++.+|++|.++++++..+.++|- ..-++.++++-=++++
T Consensus 14 ~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg---~~ll~~K~~~~~~lgl 90 (314)
T PF03812_consen 14 MMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKG---GVLLLVKFIIGALLGL 90 (314)
T ss_pred eeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhh---hHHHHHHHHHHHHHHH
Confidence 445556789999999999765322 1 123467889999999999999999999853 2234568888778899
Q ss_pred HHHHHhCCChh---hhh---hhhhcccCCchhHHH--HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccc
Q 017082 189 VIAMTLKLSAP---LAT---GLILVSCCPGGQASN--VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ--LVP 258 (377)
Q Consensus 189 ~l~~~~~l~~~---l~~---GliLlaa~P~~~~s~--v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~--~v~ 258 (377)
++.++++.+.- ... .+.+++++-....+- ..+..+|-+.+-+.. . +++...-|+...+..|. ..+
T Consensus 91 ~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA~-~----i~sl~~GPf~tMl~LG~sG~a~ 165 (314)
T PF03812_consen 91 LVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGAF-S----ILSLNDGPFFTMLALGASGLAN 165 (314)
T ss_pred HHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHHH-H----HHHhhhhHHHHHHHHhhccccC
Confidence 99999986642 222 233334433333332 345555555554332 2 33445566665555442 345
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 017082 259 VDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVT 297 (377)
Q Consensus 259 vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~ 297 (377)
+|...+. -.++|+++|+++-..-|++.+.+.+-.
T Consensus 166 ip~~~lv-----~~llP~iiG~iLGNLD~~~r~fl~~~~ 199 (314)
T PF03812_consen 166 IPWMSLV-----AALLPIIIGMILGNLDPDFRKFLAPGV 199 (314)
T ss_pred CCHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHhcCC
Confidence 6664433 468999999999999888877776653
No 17
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.38 E-value=0.063 Score=53.89 Aligned_cols=103 Identities=21% Similarity=0.286 Sum_probs=85.9
Q ss_pred HHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH-HHHHHcCCC
Q 017082 148 FLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN-VATYISKGN 226 (377)
Q Consensus 148 l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~-v~t~~agGd 226 (377)
+.=..+|.+++.+++.+..++|-......+......=+.+|.+.+.-+.|..-+ +.+++|||.+.- .+++-+|.|
T Consensus 66 ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gAd 141 (352)
T COG3180 66 ILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA----FLGSSPGGASAMVSIAQDYGAD 141 (352)
T ss_pred HHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh----hHhcCCchHHHHHHHHHHhCCC
Confidence 333467999999999999988877777777777777788888888765665433 578999998887 689999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 017082 227 VALSVLMTTCSTIGAIVMTPLLTKLLAG 254 (377)
Q Consensus 227 ~aLa~~~t~~stllav~~iPl~l~ll~g 254 (377)
..+...+..+=-+.-+.+.|+....+.|
T Consensus 142 ~~~VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 142 LRLVALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998875
No 18
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.02 E-value=0.076 Score=52.56 Aligned_cols=136 Identities=17% Similarity=0.159 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHhccchhhhhhH---hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 017082 114 TLFPVWVILGTIIGIYKPSAVTWLET---DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI 190 (377)
Q Consensus 114 ~~~~l~vilgvllg~~~P~~~~~l~~---~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l 190 (377)
....+++++|.+++-+.....+++++ ......+-.-...+|.++++.|+.+.-. +.+....+ .....=.+++.+
T Consensus 27 ~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~--~~~~~~~~-~v~~~~~~~~~l 103 (305)
T PF03601_consen 27 GALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGW--KGLLIIII-VVILTFLLTYWL 103 (305)
T ss_pred cHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCc--cHHHHHHH-HHHHHHHHHHHH
Confidence 35677888999988422211122221 1112344444567799999999988654 33333333 333333556777
Q ss_pred H-HHhCCChh----hhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082 191 A-MTLKLSAP----LATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (377)
Q Consensus 191 ~-~~~~l~~~----l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~ 253 (377)
+ +.+++|++ ++.|.-+|+..-....+++. +--+-|+++++..+.+-..++++..|.+-.++.
T Consensus 104 g~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i-~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~ 170 (305)
T PF03601_consen 104 GRRLFGLDRKLAILIAAGTSICGASAIAATAPVI-KAKEEDVAYAVATVFLFGTVAMFLYPLLGHALG 170 (305)
T ss_pred HHHHhCCCHHHHHHHHhhcccchHHHHHHHcccc-cCCCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence 7 99999877 34555555555444444443 234677889999999999999999999888653
No 19
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=97.01 E-value=0.038 Score=49.23 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017082 115 LFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL 194 (377)
Q Consensus 115 ~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~ 194 (377)
|+...++++.+.......... +-++.......++-..+|++++.+++++..+.+.......+...++.=..++.+.+..
T Consensus 23 ~llG~mi~~~~~~~~~~~~~~-~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~ 101 (156)
T TIGR03082 23 WLLGPLLAGAVLSLAGGLEIT-LPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLT 101 (156)
T ss_pred HHHHHHHHHHHHHhcCCccCC-CCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544311111 1113345556666678899999999999887765555555555555555667777777
Q ss_pred CCChhhhhhhhhcccCCchhHHH-HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 017082 195 KLSAPLATGLILVSCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKL 251 (377)
Q Consensus 195 ~l~~~l~~GliLlaa~P~~~~s~-v~t~~agGd~aLa~~~t~~stllav~~iPl~l~l 251 (377)
+.|...+ +++++|+|..-- .++...|.|.........+=.+.-.+.+|++..+
T Consensus 102 ~~~~~ta----~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 102 GVDPLTA----FLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred CCCHHHH----HHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7665433 588999999887 5688889999999988888888888888887654
No 20
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.97 E-value=0.17 Score=54.68 Aligned_cols=85 Identities=19% Similarity=0.096 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hhhhhhhcccCCchhHHH
Q 017082 140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP--LATGLILVSCCPGGQASN 217 (377)
Q Consensus 140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~--l~~GliLlaa~P~~~~s~ 217 (377)
.+.-+++.++||..|+.++++++++..+ .+...-..|.++.-++++++++.++.+.. +..|..+..++ ++....
T Consensus 58 ~laelGvv~LlF~iGLEl~~~~l~~~~~---~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS-taiv~~ 133 (621)
T PRK03562 58 HFAEFGVVLMLFVIGLELDPQRLWKLRR---SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS-TAIAMQ 133 (621)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHHHHH
Confidence 4556889999999999999999987643 23333334555544556666777776544 34444444333 334444
Q ss_pred HHHHHcCCChh
Q 017082 218 VATYISKGNVA 228 (377)
Q Consensus 218 v~t~~agGd~a 228 (377)
++...-.-+..
T Consensus 134 ~L~e~~~l~t~ 144 (621)
T PRK03562 134 AMNERNLMVTQ 144 (621)
T ss_pred HHHHhccccCc
Confidence 55554333333
No 21
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.91 Score=46.48 Aligned_cols=159 Identities=21% Similarity=0.323 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHH--h-cc-chhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHH-HHHHHH
Q 017082 116 FPVWVILGTIIGI--Y-KP-SAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKP-MLGFVI 190 (377)
Q Consensus 116 ~~l~vilgvllg~--~-~P-~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~P-ll~~~l 190 (377)
...-++.|+++|- + .+ +..+.++ .....++.++||..|+..|++++++..|+. ..+...--+..| .++...
T Consensus 33 vlg~llaGiilGp~~~~~~~~~~~~i~-~laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~ 108 (397)
T COG0475 33 VLGYLLAGIILGPWGLLLIIESSEIIE-LLAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLL 108 (397)
T ss_pred HHHHHHHHHhcCcccccccCCchHHHH-HHHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHH
Confidence 3445567777774 1 11 2223332 466789999999999999999999877643 222222223445 334222
Q ss_pred HH-HhCCChh--hhhhhhhcccCCchhHHHHHHHHcCCChh---HHHHHHHHHHHHHHHHHHHHHHHhcCcccccCh-HH
Q 017082 191 AM-TLKLSAP--LATGLILVSCCPGGQASNVATYISKGNVA---LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDA-AG 263 (377)
Q Consensus 191 ~~-~~~l~~~--l~~GliLlaa~P~~~~s~v~t~~agGd~a---La~~~t~~stllav~~iPl~l~ll~g~~v~vd~-~~ 263 (377)
.. .++.+.. +..|.. ++...++..+.++.++-+=+.+ .......+.-+.++....+...+..+...+.+. ..
T Consensus 109 ~~~~~g~~~~~al~lg~~-l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~ 187 (397)
T COG0475 109 LLGILGLSLIAALFLGAA-LALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILG 187 (397)
T ss_pred HHHHhccChHHHHHHHHH-HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHH
Confidence 22 3555543 333333 3334444555566664443333 344445566666666666655554443444332 44
Q ss_pred HHHHHHHHHHHHHHHH
Q 017082 264 LAISTFQVVLVPTVVG 279 (377)
Q Consensus 264 i~~~Ll~vVllPl~lG 279 (377)
+...+.....+=..+|
T Consensus 188 ~~~~~~~f~~~~l~~g 203 (397)
T COG0475 188 LLLAILAFLALLLLLG 203 (397)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444434444
No 22
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.20 E-value=0.053 Score=53.34 Aligned_cols=168 Identities=13% Similarity=0.189 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhccchhhhhh---Hh---HHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 017082 117 PVWVILGTIIGIYKPSAVTWLE---TD---LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI 190 (377)
Q Consensus 117 ~l~vilgvllg~~~P~~~~~l~---~~---~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l 190 (377)
.+=+.+|.++.-++|+....+. +. -....+++.+|++|.+++.++..+.+++--. -++.++++-=++++++
T Consensus 16 iVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~---l~~~K~~i~~~~g~~~ 92 (314)
T TIGR00793 16 LVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGT---LVVTKIAVAWVVAAIA 92 (314)
T ss_pred HHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcce---eeeHHHHHHHHHHHHH
Confidence 3345689999999999754422 11 2345788999999999999998888876321 2345777777788889
Q ss_pred HHHhCCCh---hhhhhhhhcccCCchhHHH--H---HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccccC
Q 017082 191 AMTLKLSA---PLATGLILVSCCPGGQASN--V---ATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ--LVPVD 260 (377)
Q Consensus 191 ~~~~~l~~---~l~~GliLlaa~P~~~~s~--v---~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~--~v~vd 260 (377)
+++++.+. .+..|+=.++..-+-..+| . .+.++|-+.+-... .+.++--=|++..+..|. ..++|
T Consensus 93 ~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~-----~i~sl~~GPf~TMi~LG~sGlA~ip 167 (314)
T TIGR00793 93 SRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAF-----VLMSLESGPLMTMVILGTAGIASFE 167 (314)
T ss_pred HHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhh-----hhhhhccCcHHHHHHHhhccCCCCC
Confidence 99998655 2222332222222222222 2 36666655553332 122333456665555543 24566
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 017082 261 AAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVT 297 (377)
Q Consensus 261 ~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~ 297 (377)
...+. -.++|+++|+.+-..-|++.+.+.+-.
T Consensus 168 ~~~lv-----~~ilPlliG~ilGNLD~~~r~fl~~~~ 199 (314)
T TIGR00793 168 PHVFV-----GAVLPFLVGFALGNLDPELRDFFSKAV 199 (314)
T ss_pred HHHHH-----HHHHHHHHHHHHhcCCHHHHHHhccCC
Confidence 64433 468999999999998888877776654
No 23
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.15 E-value=0.71 Score=49.76 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hhhhhhhcccCCchhHHH
Q 017082 140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP--LATGLILVSCCPGGQASN 217 (377)
Q Consensus 140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~--l~~GliLlaa~P~~~~s~ 217 (377)
.+.-+++.++||..|+.++++++++..+ .+...-..|.++.-++.+++...++.+.. +..|+ .++.++++....
T Consensus 58 ~laelGvv~LLF~iGLel~~~~l~~~~~---~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~-~la~SSTaiv~~ 133 (601)
T PRK03659 58 HFSELGVVFLMFIIGLELNPSKLWQLRR---SIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGI-GLAMSSTAMALQ 133 (601)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHH
Confidence 4556889999999999999999987544 22322333554433344445555666543 33342 223344444455
Q ss_pred HHHHHcCCChh
Q 017082 218 VATYISKGNVA 228 (377)
Q Consensus 218 v~t~~agGd~a 228 (377)
++...-.-+.+
T Consensus 134 iL~e~~~~~t~ 144 (601)
T PRK03659 134 LMREKGMNRSE 144 (601)
T ss_pred HHHHcccccCc
Confidence 56555433443
No 24
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.89 E-value=2 Score=45.77 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhccch-----hhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhc
Q 017082 116 FPVWVILGTIIGIYKPSA-----VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLR 167 (377)
Q Consensus 116 ~~l~vilgvllg~~~P~~-----~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~ 167 (377)
....+++|+++|-..+.. .+.. .....+++.++||..|++++++++++..+
T Consensus 33 ll~~il~GillGp~~lg~i~~~~~~~~-~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~ 88 (562)
T PRK05326 33 LLLFLAIGMLAGEDGLGGIQFDNYPLA-YLVGNLALAVILFDGGLRTRWSSFRPALG 88 (562)
T ss_pred HHHHHHHHHHhCccccCCcccCcHHHH-HHHHHHHHHHHHHcCccCCCHHHHHHHHH
Confidence 344555778777543221 1112 24667899999999999999999997765
No 25
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.68 E-value=0.66 Score=46.55 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhc-cchhhhhhHh---HHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 017082 115 LFPVWVILGTIIGIYK-PSAVTWLETD---LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI 190 (377)
Q Consensus 115 ~~~l~vilgvllg~~~-P~~~~~l~~~---~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l 190 (377)
...+.+++|.+++-.. |...++.++. .....+-.-...+|.+++++|+.+.-. +.+......-. ..=++++.+
T Consensus 33 ~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~--~~l~~~~~~v~-~~~~~~~~~ 109 (335)
T TIGR00698 33 ALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGP--NEIVADTLILT-STFFLTVFL 109 (335)
T ss_pred HHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhH--HHHHHHHHHHH-HHHHHHHHH
Confidence 3456777777777643 2222222211 112334444566799999999987654 33333222211 222334556
Q ss_pred H-HHhCCChh----hhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082 191 A-MTLKLSAP----LATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (377)
Q Consensus 191 ~-~~~~l~~~----l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~ 253 (377)
+ +.+++|++ .+.|.-+|+++-....+++. +--+-|+++++..+.+-..++.+..|.+..++.
T Consensus 110 g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i-~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 110 GSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI-KAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc-CCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 5 78998876 35566666555444444433 234567789999999999999999999887664
No 26
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.25 E-value=4.4 Score=43.11 Aligned_cols=79 Identities=23% Similarity=0.412 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhccchh---hhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 017082 116 FPVWVILGTIIGIYKPSAV---TWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAM 192 (377)
Q Consensus 116 ~~l~vilgvllg~~~P~~~---~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~ 192 (377)
...-+++|+++|-...+.. +.++ ....+++.++||..|++++++++++.. +....+...++++.-++++++.+
T Consensus 33 ivg~IlaGillGp~~lg~~~~~~~~~-~la~lGli~llF~~Gle~d~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 108 (558)
T PRK10669 33 LVGYLLAGVLAGPFTPGFVADTKLAP-ELAELGVILLMFGVGLHFSLKDLMAVK---SIAIPGAIAQIAVATLLGMALSA 108 (558)
T ss_pred HHHHHHHHHhhCccccccccchHHHH-HHHHHHHHHHHHHhHhcCCHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557777764332221 1222 456788999999999999999997652 33444455566655556676777
Q ss_pred HhCCCh
Q 017082 193 TLKLSA 198 (377)
Q Consensus 193 ~~~l~~ 198 (377)
.++.+.
T Consensus 109 ~~~~~~ 114 (558)
T PRK10669 109 VLGWSL 114 (558)
T ss_pred HhCCCH
Confidence 776543
No 27
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=95.22 E-value=2.6 Score=46.89 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhccchh---hh-----hhHhHHHHHHHHHHHHhcccCChHHHHHHhcCC
Q 017082 115 LFPVWVILGTIIGIYKPSAV---TW-----LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNP 169 (377)
Q Consensus 115 ~~~l~vilgvllg~~~P~~~---~~-----l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~p 169 (377)
..++.+++|+++|-..-+.. .| +.....-+.+.+.+|..|++++.+.+++..+.+
T Consensus 40 ~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV 102 (810)
T TIGR00844 40 ESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSV 102 (810)
T ss_pred HHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHH
Confidence 34566667888776422111 11 100133478999999999999999998776543
No 28
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=95.21 E-value=3 Score=39.86 Aligned_cols=168 Identities=20% Similarity=0.291 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhccc---hhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHH-H-HHHHH
Q 017082 116 FPVWVILGTIIGIYKPS---AVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKP-M-LGFVI 190 (377)
Q Consensus 116 ~~l~vilgvllg~~~P~---~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~P-l-l~~~l 190 (377)
...-+++|+++|-..-+ ..++++ .....++.+.||..|+++|.+++++..++ ....+ ...+ +.| . +++..
T Consensus 19 ~v~~il~GillGp~~lg~i~~~~~~~-~l~~igl~~llF~~Gl~~d~~~l~~~~~~--~~~~~-~~~~-~~~~~~~~~~~ 93 (273)
T TIGR00932 19 VLGYLLAGVLIGPSGLGLISNVEGVN-HLAEFGVILLMFLIGLELDLERLWKLRKA--AFGVG-VLQV-LVPGVLLGLLL 93 (273)
T ss_pred HHHHHHHHHHhCcccccCCCChHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHH-HHHH-HHHHHHHHHHH
Confidence 34455578887733111 112233 45678899999999999999999887653 22222 2233 345 2 23445
Q ss_pred HHHhCCChh--hhhhhhhcccCCchhHHHHHHHH--cCCChh-HHHHHHHHHHHHHHHHHHHHHHHhcCcccccChHHHH
Q 017082 191 AMTLKLSAP--LATGLILVSCCPGGQASNVATYI--SKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLA 265 (377)
Q Consensus 191 ~~~~~l~~~--l~~GliLlaa~P~~~~s~v~t~~--agGd~a-La~~~t~~stllav~~iPl~l~ll~g~~v~vd~~~i~ 265 (377)
.+.++.+.. ...|.++....|+. ...++.++ .+.+.. +......++-+.+++..-+...+..+.. .+.....
T Consensus 94 ~~~~~~~~~~~~~lg~~ls~Ts~~v-~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~ 170 (273)
T TIGR00932 94 GHLLGLALGAAVVIGIILALSSTAV-VVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALA 170 (273)
T ss_pred HHHHCCCHHHHHHHHHHHHHhHHHH-HHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHH
Confidence 566665433 23333333222211 11223322 233322 4455556777788777666655443321 1211222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 017082 266 ISTFQVVLVPTVVGVLANEFFPKFTS 291 (377)
Q Consensus 266 ~~Ll~vVllPl~lG~llr~~~p~~~~ 291 (377)
..+...+..-+..+.+.|+..+...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
T TIGR00932 171 LLLLKVFLAFLLLVLLGRWLLRPVLR 196 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333344455555555544333
No 29
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=94.98 E-value=0.24 Score=49.01 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 017082 116 FPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLK 195 (377)
Q Consensus 116 ~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~ 195 (377)
..+.+++|.++|-+.+...+.++ +-.+..+.+..|..|.+++++++.+.-. +.+..+.+.- ++.=.+++.+.++++
T Consensus 169 lilpILiGmilGNld~~~~~~l~-~Gi~f~I~f~~f~LG~~lnl~~I~~~G~--~GIlL~v~vv-~~t~~~~~~i~rllg 244 (312)
T PRK12460 169 ALLPLVLGMILGNLDPDMRKFLT-KGGPLLIPFFAFALGAGINLSMLLQAGL--AGILLGVLVT-IVTGFFNIFADRLVG 244 (312)
T ss_pred HHHHHHHHHHHhccchhhHHHHh-ccceEeHHHHHHHhcCCeeHHHHHHhCh--HHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 34555567777766665545554 4455578888899999999999987643 3555554432 233455677778887
Q ss_pred CChhhhhhhhh-cccCCchhHHH-HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082 196 LSAPLATGLIL-VSCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (377)
Q Consensus 196 l~~~l~~GliL-laa~P~~~~s~-v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~ 253 (377)
.++......-= .+.+=|+++.. ...-..+..++.+...+..+.+...++.|++..++.
T Consensus 245 ~~~~~g~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~ 304 (312)
T PRK12460 245 GTGIAGAAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWVA 304 (312)
T ss_pred CChhHHHHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77654222110 11111111111 122233334555666666666666666666666653
No 30
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=94.96 E-value=0.63 Score=46.54 Aligned_cols=214 Identities=17% Similarity=0.242 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhccchhh-------hhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 017082 117 PVWVILGTIIGIYKPSAVT-------WLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFV 189 (377)
Q Consensus 117 ~l~vilgvllg~~~P~~~~-------~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~ 189 (377)
.+=+++|.++.-++|+... .++ .-....+++.+|.+|.+++.++....+++--.+ ++.++.+-=++++.
T Consensus 18 ~vpl~~g~~i~tf~P~~~~~g~fT~alf~-~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l---~~~k~~~~~~~~~~ 93 (326)
T PRK05274 18 LVPLLLGALINTFAPGALYFGSFTNALFK-TGAVPILAVFLFCMGASINLRATGTVLKKGGTL---LLTKFAVAALVGVI 93 (326)
T ss_pred eHHHHHHHHHHHhCCcceeeCcchHHHHh-cChHHHHHHHHHHcCCEEeccccchhhhhchhH---HHHHHHHHHHHHHH
Confidence 3445688889999998521 121 123457888999999999999998888763222 23355555556666
Q ss_pred HHHHhCCCh---hhhhhhh------hcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccc
Q 017082 190 IAMTLKLSA---PLATGLI------LVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ--LVP 258 (377)
Q Consensus 190 l~~~~~l~~---~l~~Gli------Llaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~--~v~ 258 (377)
..++++.+. ....|.- .+.-+=++.....++...+....-+.. +++.-.-|.....+.+. ..+
T Consensus 94 ~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g~~~d~ga~i------~lsl~~Gp~~tM~lL~aagla~ 167 (326)
T PRK05274 94 AGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYGTKEDAGAFV------LMSLEDGPFMTMLALGAAGLAS 167 (326)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCcchHH------HHHHhhhHHHHHHHHHhhCccc
Confidence 666655322 1111111 111112222222222221111111111 11222234444444332 223
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHH
Q 017082 259 VDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAA 338 (377)
Q Consensus 259 vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~g 338 (377)
++...+. + .++|+++|+.++.+.+++.+...+-... ++-......-.+-+.+.+...+..-++.....+...
T Consensus 168 ~p~~~li-~----allplliG~~lgnl~~~l~~~~~~Gi~~---lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t 239 (326)
T PRK05274 168 FPPPALV-G----AVLPLLVGFILGNLDPELRQFLGKAVPV---LIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVT 239 (326)
T ss_pred CCCchhh-H----HHHHHHHHHHHHhHHHhhHHHhcCCcEE---EHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhcc
Confidence 5554442 2 2399999999999888777666654433 111111111122233444445554444444556667
Q ss_pred HHHHHHHhhc
Q 017082 339 FALGYWLSKI 348 (377)
Q Consensus 339 f~lGy~l~r~ 348 (377)
+..+|+..|+
T Consensus 240 ~~~~~~~~Rl 249 (326)
T PRK05274 240 GIPLYLADRL 249 (326)
T ss_pred chhhHhHhhe
Confidence 7778999987
No 31
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.85 E-value=1.3 Score=44.44 Aligned_cols=135 Identities=20% Similarity=0.213 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHhccchhhhhhH--hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 017082 115 LFPVWVILGTIIGIYKPSAVTWLET--DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAM 192 (377)
Q Consensus 115 ~~~l~vilgvllg~~~P~~~~~l~~--~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~ 192 (377)
...+++++|++++.+......+-.. -.....+-+-....|.++++.|+.+.-.+ .+.. ........=++++.+++
T Consensus 39 al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~--~v~~-~~~~l~~t~~~~~~lg~ 115 (334)
T COG2855 39 ALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGS--GVLI-IAITLSSTFLFAYFLGK 115 (334)
T ss_pred HHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCcc--HHHH-HHHHHHHHHHHHHHHHH
Confidence 4677788899888443221111000 11122333334556999999999876543 2222 22233333356888899
Q ss_pred HhCCChhhhhhhhhcccCCchhHHHHH----HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082 193 TLKLSAPLATGLILVSCCPGGQASNVA----TYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (377)
Q Consensus 193 ~~~l~~~l~~GliLlaa~P~~~~s~v~----t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~ 253 (377)
.+++|...+. ++-+++.=||.+..+- ..--+-|++.++..+++-..++.+..|.+..++.
T Consensus 116 ~lgld~~~a~-Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~ 179 (334)
T COG2855 116 LLGLDKKLAL-LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG 179 (334)
T ss_pred HhCCCHHHHH-HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence 9999887432 2333444444444322 2344567788888888888888899999887753
No 32
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.75 E-value=1.3 Score=44.01 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH-HH
Q 017082 141 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN-VA 219 (377)
Q Consensus 141 ~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~-v~ 219 (377)
....+-.++=..+|++++.+++++..|.........+.-....=+.++++.++.+.|. .-.+++.+|+|...- ..
T Consensus 205 l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l~ 280 (318)
T PF05145_consen 205 LVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMALI 280 (318)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHHH
Confidence 3344555556678999999999887764433334444444445556666666665543 456789999999987 57
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082 220 TYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (377)
Q Consensus 220 t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~ 253 (377)
+...|.|+++......+=.+.-.+++|.+..++.
T Consensus 281 A~~l~~d~~~V~~~q~~Rl~~v~~~~p~~~r~~~ 314 (318)
T PF05145_consen 281 ALALGADVAFVAAHQVVRLLFVLLLAPFIARWLR 314 (318)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888888998887765
No 33
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=94.58 E-value=1.1 Score=42.38 Aligned_cols=89 Identities=22% Similarity=0.229 Sum_probs=70.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH---HHHHHcCCChhHHHHHHHH
Q 017082 160 EDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTC 236 (377)
Q Consensus 160 ~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~---v~t~~agGd~aLa~~~t~~ 236 (377)
++.....+|++.+..+....-++--...+.+++.++++++....+. |=...++ -.++..|||.++.+..+++
T Consensus 68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~-----pkSVTtpiAi~is~~iGG~~sLta~~Vvi 142 (215)
T PF04172_consen 68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLA-----PKSVTTPIAIEISEQIGGIPSLTAVFVVI 142 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH-----HHHhhHHHHHHHHHHhCChHHHHHHHHHH
Confidence 3444555667788888887777777788889999999998776654 4333333 4799999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 017082 237 STIGAIVMTPLLTKLLA 253 (377)
Q Consensus 237 stllav~~iPl~l~ll~ 253 (377)
+-++..+.-|.+++++.
T Consensus 143 tGi~Ga~~g~~llk~~~ 159 (215)
T PF04172_consen 143 TGILGAVLGPPLLKLLR 159 (215)
T ss_pred HhhHHHHhHHHHHhHcc
Confidence 99999999999998864
No 34
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=94.47 E-value=6 Score=39.72 Aligned_cols=100 Identities=21% Similarity=0.277 Sum_probs=70.3
Q ss_pred HHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChh
Q 017082 149 LMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA 228 (377)
Q Consensus 149 ~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~a 228 (377)
+++++|.-.|+. -.+.|||..+++...|+.++ .++..+..++.++..+..+-+.+.+=+.++-.+-+.++. |.-
T Consensus 75 IF~GIGAmtDFg---pllanP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LAp-~Ll 148 (360)
T PF03977_consen 75 IFMGIGAMTDFG---PLLANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKLAP-HLL 148 (360)
T ss_pred HHHHHhHHHhhH---HHHhCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhhhH-HHH
Confidence 356778766555 45679999999999999874 666777788999999999989998877766665555542 333
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhcC
Q 017082 229 LSVLMTTCST-IGAIVMTPLLTKLLAG 254 (377)
Q Consensus 229 La~~~t~~st-llav~~iPl~l~ll~g 254 (377)
-.+....-|- -+.++.-|-+++++..
T Consensus 149 gpIaVaAYsYMaLvPiiqPpimklLtt 175 (360)
T PF03977_consen 149 GPIAVAAYSYMALVPIIQPPIMKLLTT 175 (360)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence 3333333333 3467778888888863
No 35
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=94.13 E-value=1.3 Score=42.15 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=69.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH---HHHHHcCCChhHHHHHHHH
Q 017082 160 EDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTC 236 (377)
Q Consensus 160 ~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~---v~t~~agGd~aLa~~~t~~ 236 (377)
++.+...++++.+..+...--++--..++++++.++++++....+ .|=....+ -.++..|||++++...+++
T Consensus 78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl-----~pkSvTtpiAm~vs~~iGG~~sLta~~vvi 152 (226)
T TIGR00659 78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASL-----LPKSVTTPIAMHVSEMIGGIPAVTAVFVIL 152 (226)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHh-----hhHHhhHHHHHHHHHHhCChHHHHHHHHHH
Confidence 444444556677787777666666678889999999998876644 44444444 4699999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 017082 237 STIGAIVMTPLLTKLLA 253 (377)
Q Consensus 237 stllav~~iPl~l~ll~ 253 (377)
+-++...+-|.+++++.
T Consensus 153 tGi~Ga~~g~~ll~~~~ 169 (226)
T TIGR00659 153 TGLLGTVFGPMVLRYFR 169 (226)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999998874
No 36
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=93.96 E-value=2.1 Score=40.79 Aligned_cols=87 Identities=9% Similarity=0.141 Sum_probs=69.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH---HHHHHcCCChhHHHHHHHHHH
Q 017082 162 FRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTCST 238 (377)
Q Consensus 162 l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~---v~t~~agGd~aLa~~~t~~st 238 (377)
.+...++++.+..+.++--++--+.++.++++++++++....+ .|=....+ -.++..||+++++...++++-
T Consensus 86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl-----~pKSVTtPIAm~is~~iGG~psLtA~~ViitG 160 (232)
T PRK04288 86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM-----LPQAATTAIALPVSAGIGGIKEITSFAVIFNA 160 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH-----hhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3344455678888888777777788899999999999876554 45444444 469999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 017082 239 IGAIVMTPLLTKLLA 253 (377)
Q Consensus 239 llav~~iPl~l~ll~ 253 (377)
++..++-|.+++++.
T Consensus 161 i~Gai~g~~llk~~~ 175 (232)
T PRK04288 161 VIIYALGAKFLKLFR 175 (232)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998875
No 37
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=93.47 E-value=8.1 Score=39.26 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=67.6
Q ss_pred HHHHhcccCChHHHHHHhcCChHHHH-HHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCCh
Q 017082 149 LMLSMGLTLTFEDFRRCLRNPWTVGI-GFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNV 227 (377)
Q Consensus 149 ~mf~~Gl~l~~~~l~~~~~~pk~l~~-~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~ 227 (377)
+++++|.-.|+.- .+.|||..++ +...|+.++ ..+..+..++.+...+..+-+.+.+=+.++-.+-+.++. |.
T Consensus 111 IFlGIGAMtDFgp---llanP~~~ll~gaaAQ~GiF--~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLAp-~L 184 (399)
T TIGR03136 111 LFFGIGAMSDISF---ILARPWASITVALFAEMGTF--ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLILAK-DL 184 (399)
T ss_pred HHHhccHHhcchH---HHhChHHHHHHHHHHHhhHH--HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHhhhh-Hh
Confidence 3567787666554 4679999998 789999874 555667778899888888888888877766665555552 22
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 017082 228 ALSVLMTTCS-TIGAIVMTPLLTKLLAG 254 (377)
Q Consensus 228 aLa~~~t~~s-tllav~~iPl~l~ll~g 254 (377)
--++...+-| .-+.++.-|-+++++..
T Consensus 185 lg~IaVAAYsYMaLVPiiqPpimklLtt 212 (399)
T TIGR03136 185 FVPISIIAYLYLSLTYAGYPYLIKLLVP 212 (399)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence 2223333333 23466777888888763
No 38
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.38 E-value=6.5 Score=44.20 Aligned_cols=107 Identities=14% Similarity=0.271 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHH-HHHHHHHHhCCC---h-h----hhhhhhhcccC
Q 017082 140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPM-LGFVIAMTLKLS---A-P----LATGLILVSCC 210 (377)
Q Consensus 140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pl-l~~~l~~~~~l~---~-~----l~~GliLlaa~ 210 (377)
.+..+++.+.||..|+.++++.+++..+ +.+.+++. .+ +.|+ ++++++..++.. . . +..|+.+- ..
T Consensus 106 ~la~lGlillmFliGLE~Dl~~lr~~~k--~a~~ia~~-~~-ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS-~T 180 (832)
T PLN03159 106 TMANLGLLYFLFLVGVEMDISVIRRTGK--KALAIAIA-GM-ALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALS-VT 180 (832)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHhcch--HHHHHHHH-HH-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH-Hh
Confidence 4567889999999999999999986544 33433333 33 3455 345555444321 1 1 11222211 11
Q ss_pred CchhHHHHHHHHc--CCChh-HHHHHHHHHHHHHHHHHHHHHHH
Q 017082 211 PGGQASNVATYIS--KGNVA-LSVLMTTCSTIGAIVMTPLLTKL 251 (377)
Q Consensus 211 P~~~~s~v~t~~a--gGd~a-La~~~t~~stllav~~iPl~l~l 251 (377)
..+..+.++..+- +-+.. +++...+++-+++.+++-+...+
T Consensus 181 s~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l 224 (832)
T PLN03159 181 AFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL 224 (832)
T ss_pred hHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222333322 33332 45566677777776666554433
No 39
>PRK10711 hypothetical protein; Provisional
Probab=93.34 E-value=0.92 Score=43.22 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=70.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH---HHHHHcCCChhHHHHHHHHH
Q 017082 161 DFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTCS 237 (377)
Q Consensus 161 ~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~---v~t~~agGd~aLa~~~t~~s 237 (377)
+.+...++++.+..+...--++--..++++++.++++++....+. |=....+ -.++..||+.+++...++++
T Consensus 80 q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~-----pkSVTtPIAm~is~~iGG~~sLta~~Viit 154 (231)
T PRK10711 80 QLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASIL-----PKSVTTPIAMAVGGSIGGIPAISAVCVIFV 154 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh-----hhhhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 334444566788888877777777889999999999998776654 4444444 46999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 017082 238 TIGAIVMTPLLTKLLA 253 (377)
Q Consensus 238 tllav~~iPl~l~ll~ 253 (377)
-+.+.++-|.+++++.
T Consensus 155 Gi~Ga~~g~~llk~~r 170 (231)
T PRK10711 155 GILGAVFGHTLLNAMR 170 (231)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999998875
No 40
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=92.64 E-value=6 Score=37.62 Aligned_cols=89 Identities=22% Similarity=0.215 Sum_probs=72.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH---HHHHHcCCChhHHHHHHHH
Q 017082 160 EDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTC 236 (377)
Q Consensus 160 ~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~---v~t~~agGd~aLa~~~t~~ 236 (377)
+++....|+|+.+..+.+.--++-=..+++++++|+++++.... .+|=....+ -.++..||-.++.+..+++
T Consensus 81 kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~S-----l~PkSvTTpiAm~vs~~iGGip~ltav~Vi~ 155 (230)
T COG1346 81 KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILS-----LLPKSVTTPIAMEVSESIGGIPALTAVFVIL 155 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-----hcccccccHHHHHHHHhcCCchHHHHHHHHH
Confidence 45555567788888888776666667889999999999986554 456555555 3699999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 017082 237 STIGAIVMTPLLTKLLA 253 (377)
Q Consensus 237 stllav~~iPl~l~ll~ 253 (377)
+-++.-++-|.+++++.
T Consensus 156 tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 156 TGILGAVLGPLLLKLLR 172 (230)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998874
No 41
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=91.10 E-value=13 Score=37.17 Aligned_cols=100 Identities=22% Similarity=0.301 Sum_probs=63.1
Q ss_pred HHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCC------ChhhhhhhhhcccCCchhHHHHHHHH
Q 017082 149 LMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKL------SAPLATGLILVSCCPGGQASNVATYI 222 (377)
Q Consensus 149 ~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l------~~~l~~GliLlaa~P~~~~s~v~t~~ 222 (377)
+++++|.-.|+. -.+.|||.++++...|+.++ ..+..+..+++ +...+..+-+.+.+=+.++-.+-+.+
T Consensus 69 IFlGIGAmtDFg---pllanP~~~llGaaAQ~GiF--~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s~~l 143 (354)
T TIGR01109 69 IFMGIGALTDFG---PLLANPRTLLLGAAAQFGIF--ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLSGKL 143 (354)
T ss_pred HHHhccHHhhhH---HHHhChHHHHHHHHHHhhHH--HHHHHHHHhCCCcccccChhhceeeeeeccCCCchhhhhHhhh
Confidence 356777766555 45679999999999999874 45556666777 44667777777777666555544444
Q ss_pred cCCChhHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 017082 223 SKGNVALSVLMTTCS-TIGAIVMTPLLTKLLAG 254 (377)
Q Consensus 223 agGd~aLa~~~t~~s-tllav~~iPl~l~ll~g 254 (377)
+. |.--++....-| .-+.++.-|-+++++..
T Consensus 144 ap-~Llg~IaVAAYsYMaLvPiiqPpimklLtt 175 (354)
T TIGR01109 144 AP-ELLAAIAVAAYSYMALVPIIQPPIMKALTS 175 (354)
T ss_pred hh-HHHHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence 42 222223333333 23456677788888763
No 42
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=90.58 E-value=13 Score=37.65 Aligned_cols=109 Identities=12% Similarity=0.174 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHH-H
Q 017082 141 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNV-A 219 (377)
Q Consensus 141 ~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v-~ 219 (377)
...+.-.++.-..|.+++...+++..|--....+..+..+...=.+++++.+..+.|.. ...++.+|+|...-. +
T Consensus 238 l~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma~~ 313 (352)
T COG3180 238 LLAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMAAI 313 (352)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHHHH
Confidence 34455556667889999999998876654444445555555555667777777666554 346789999999985 5
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082 220 TYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (377)
Q Consensus 220 t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~ 253 (377)
+...+-|.++...+.++=-++-.+..|.+.+++.
T Consensus 314 A~~l~ad~a~V~a~q~lRll~il~i~p~l~r~l~ 347 (352)
T COG3180 314 AAALGADPAFVMALQVLRLLFILLLGPALARFLS 347 (352)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666669999999998888887777888777664
No 43
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=90.49 E-value=19 Score=36.84 Aligned_cols=98 Identities=21% Similarity=0.287 Sum_probs=61.7
Q ss_pred HHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHh------CCChhhhhhhhhcccCCchhHHHHHHHHc
Q 017082 150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL------KLSAPLATGLILVSCCPGGQASNVATYIS 223 (377)
Q Consensus 150 mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~------~l~~~l~~GliLlaa~P~~~~s~v~t~~a 223 (377)
++++|.-.|+.- .+.|||.++++...|+.++= .+..+..+ +.+...+..+-+.+.+=+.++-.+-+.++
T Consensus 141 F~GIGAMtDFgp---LlanP~~~llGaAAQ~GIF~--t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA 215 (433)
T PRK15477 141 FMGVGAMTDFGP---LLANPRTLLLGAAAQFGIFA--TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA 215 (433)
T ss_pred HHhccHHhcchH---HhhCHHHHHHHHHHHhhHHH--HHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh
Confidence 567777665554 46799999999999998753 33333333 67777777887888876666555544444
Q ss_pred CCChhHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 017082 224 KGNVALSVLMTTCS-TIGAIVMTPLLTKLLA 253 (377)
Q Consensus 224 gGd~aLa~~~t~~s-tllav~~iPl~l~ll~ 253 (377)
. |.--++....-| .-+.++.-|-+++++.
T Consensus 216 P-~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15477 216 P-ELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred h-HhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 2 222223333333 2345667777888876
No 44
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=90.45 E-value=19 Score=36.80 Aligned_cols=98 Identities=21% Similarity=0.287 Sum_probs=61.7
Q ss_pred HHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHh------CCChhhhhhhhhcccCCchhHHHHHHHHc
Q 017082 150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL------KLSAPLATGLILVSCCPGGQASNVATYIS 223 (377)
Q Consensus 150 mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~------~l~~~l~~GliLlaa~P~~~~s~v~t~~a 223 (377)
++++|.-.|+.- .+.|||.++++...|+.++= .+..+..+ +.+...+..+-+.+.+=+.++-.+-+.++
T Consensus 141 F~GIGAMtDFgp---LlanP~~~llGaAAQ~GIF~--t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA 215 (433)
T PRK15476 141 FMGVGAMTDFGP---LLANPRTLLLGAAAQFGIFA--TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA 215 (433)
T ss_pred HHhccHHhcchH---HhhCHHHHHHHHHHHhhHHH--HHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh
Confidence 567777665554 46799999999999998753 33333333 67777777887888876666555544444
Q ss_pred CCChhHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 017082 224 KGNVALSVLMTTCS-TIGAIVMTPLLTKLLA 253 (377)
Q Consensus 224 gGd~aLa~~~t~~s-tllav~~iPl~l~ll~ 253 (377)
. |.--++....-| .-+.++.-|-+++++.
T Consensus 216 P-~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15476 216 P-ELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred h-HhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 2 222223333333 2345667777888876
No 45
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=90.39 E-value=19 Score=36.74 Aligned_cols=98 Identities=21% Similarity=0.289 Sum_probs=61.9
Q ss_pred HHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHh------CCChhhhhhhhhcccCCchhHHHHHHHHc
Q 017082 150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL------KLSAPLATGLILVSCCPGGQASNVATYIS 223 (377)
Q Consensus 150 mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~------~l~~~l~~GliLlaa~P~~~~s~v~t~~a 223 (377)
++++|.-.|+.- .+.|||.++++...|+.++=- +..+..+ +.+...+..+-+.+.+=+.++-.+-+.++
T Consensus 141 F~GIGAMtDFgp---LlanP~~~llGaAAQ~GIF~t--~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA 215 (433)
T PRK15475 141 FMGVGAMTDFGP---LLANPRTLLLGAAAQFGIFAT--VLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA 215 (433)
T ss_pred HHhccHHhcchH---HhhCHHHHHHHHHHHhhHHHH--HHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh
Confidence 567777665554 467999999999999987533 3333333 67777788888888877666555544444
Q ss_pred CCChhHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 017082 224 KGNVALSVLMTTCS-TIGAIVMTPLLTKLLA 253 (377)
Q Consensus 224 gGd~aLa~~~t~~s-tllav~~iPl~l~ll~ 253 (377)
. |.--++....-| .-+.++.-|-+++++.
T Consensus 216 P-~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15475 216 P-ELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred h-HhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 2 222223333333 2345667777888876
No 46
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=90.10 E-value=29 Score=36.91 Aligned_cols=48 Identities=17% Similarity=0.394 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHh--ccchhhhhhH-hHHHHHHHHHHHHhcccCChHHHHHHhc
Q 017082 118 VWVILGTIIGIY--KPSAVTWLET-DLFTIGLGFLMLSMGLTLTFEDFRRCLR 167 (377)
Q Consensus 118 l~vilgvllg~~--~P~~~~~l~~-~~~~~~l~l~mf~~Gl~l~~~~l~~~~~ 167 (377)
..+++|+++|.. .|.. . +.+ ......+..++|..|++++++++++..+
T Consensus 27 ~lil~Gi~lg~~~~~~~~-~-~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~ 77 (525)
T TIGR00831 27 ALILAGLLLGLAGLLPEV-P-LDREIVLFLFLPPLLFEAAMNTDLRELRENFR 77 (525)
T ss_pred HHHHHHHHHHhccccCCC-C-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344478888853 2211 0 111 2345788899999999999999987665
No 47
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=90.09 E-value=16 Score=33.84 Aligned_cols=127 Identities=22% Similarity=0.268 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChH--HHHHHh-cCChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 017082 119 WVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFE--DFRRCL-RNPWTVGIGFLAQYLIKPMLGFVIAMTLK 195 (377)
Q Consensus 119 ~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~--~l~~~~-~~pk~l~~~lv~~~vl~Pll~~~l~~~~~ 195 (377)
++++|+++|++........ ....++.+.+++|.+|+++..+ .+++.. -++|.+.+.+.. .+--=+.++....+++
T Consensus 4 ~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t-IlGSllgg~l~~~ll~ 81 (191)
T PF03956_consen 4 ALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT-ILGSLLGGLLASLLLG 81 (191)
T ss_pred eHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 5678999999976543333 3677888999999999999766 333333 134444433332 1111123444445554
Q ss_pred CChhhhhhhhhcccCCchhHHHHH-HHHcCCChhHHHHHHHHHHH----HHHHHHHHHHHHh
Q 017082 196 LSAPLATGLILVSCCPGGQASNVA-TYISKGNVALSVLMTTCSTI----GAIVMTPLLTKLL 252 (377)
Q Consensus 196 l~~~l~~GliLlaa~P~~~~s~v~-t~~agGd~aLa~~~t~~stl----lav~~iPl~l~ll 252 (377)
.+. ..++.+-+..-==+.|.++ ++. +|.++.. +..++++ ++.+.+|++.+.+
T Consensus 82 ~~~--~~~lav~sG~GwYSlsg~~i~~~--~~~~~G~-iafl~n~~RE~~a~~~~P~~~r~~ 138 (191)
T PF03956_consen 82 LSL--KESLAVASGFGWYSLSGVLITQL--YGPELGT-IAFLSNLFREILAIILIPLLARYF 138 (191)
T ss_pred CCH--HHHHHHHccCcHHHhHHHHHHhh--hCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 443 3333333322222333333 333 3444433 3344444 4899999998843
No 48
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.29 E-value=15 Score=39.97 Aligned_cols=105 Identities=22% Similarity=0.307 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hhhhhhhcccCCchhHHH
Q 017082 140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP--LATGLILVSCCPGGQASN 217 (377)
Q Consensus 140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~--l~~GliLlaa~P~~~~s~ 217 (377)
++-.+.+.+.+..+|+++++..+.+ +|..++...+.-++..++..++.++.++.+.. ...|+.+ ++.|-.+.
T Consensus 268 pf~~lll~lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L---~~~Gef~~ 341 (621)
T PRK03562 268 PFKGLLLGLFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLL---GQGGEFAF 341 (621)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHH---hccccHHH
Confidence 3445566777778999999987764 34444444555678888899999999987654 5555533 45566666
Q ss_pred HHHHHcC--C--ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 017082 218 VATYISK--G--NVALSVLMTTCSTIGAIVMTPLLTKL 251 (377)
Q Consensus 218 v~t~~ag--G--d~aLa~~~t~~stllav~~iPl~l~l 251 (377)
+....+. | |.+....++ ...+++.+++|++..+
T Consensus 342 vl~~~a~~~~~i~~~~~~~lv-~~v~lS~~~tP~l~~~ 378 (621)
T PRK03562 342 VVFGAAQMANVLEPEWAKLLT-LAVALSMAATPLLLVL 378 (621)
T ss_pred HHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 5433322 2 333333333 3556777888877654
No 49
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=88.07 E-value=33 Score=34.89 Aligned_cols=173 Identities=16% Similarity=0.221 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHhccchhh--h----hhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 017082 115 LFPVWVILGTIIGIYKPSAVT--W----LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGF 188 (377)
Q Consensus 115 ~~~l~vilgvllg~~~P~~~~--~----l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~ 188 (377)
..|-.++.|.+..+..+.... + +...+....+...+-.+|++-+.+.+++..++-...+........+-=+++.
T Consensus 33 ~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~ 112 (368)
T PF03616_consen 33 FIPASVIGGLIFAILPLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGL 112 (368)
T ss_pred cCCchHHHHHHHHHHHHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788777765544322111 1 1112334444444558899999888877654311111111112223334577
Q ss_pred HHHHHhCCChhhhh--hhhhcccCCchhHHH--HHHHHcC--CChhHHHHHHHHHHHHHHHH-HHHHHHHhc-C----cc
Q 017082 189 VIAMTLKLSAPLAT--GLILVSCCPGGQASN--VATYISK--GNVALSVLMTTCSTIGAIVM-TPLLTKLLA-G----QL 256 (377)
Q Consensus 189 ~l~~~~~l~~~l~~--GliLlaa~P~~~~s~--v~t~~ag--Gd~aLa~~~t~~stllav~~-iPl~l~ll~-g----~~ 256 (377)
.++.+++++|.+.. |-+=+.-=+++.++. .+....| +-.++++...++..+.+.+. .|+.-++.- + +.
T Consensus 113 ~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~~~~~~ 192 (368)
T PF03616_consen 113 GLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGKLKPKK 192 (368)
T ss_pred HHHHHhCCCchHHHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 77888888876432 211222233433333 4443323 33445555556666665444 787544432 1 00
Q ss_pred --------c-----------ccChHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 017082 257 --------V-----------PVDAAGLAISTFQVVLVPTVVGVLANEFFPK 288 (377)
Q Consensus 257 --------v-----------~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~ 288 (377)
. +++...+...+ ..+.+.+.+|..++.+..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l-~~i~i~~~~G~~i~~~l~~ 242 (368)
T PF03616_consen 193 EPDELKEYLRKGEERPSAGRPITSSSLIEHL-ALILIAIGLGYIISALLKK 242 (368)
T ss_pred ccccccccccccccccccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 0 12334455544 3577778888888876543
No 50
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=86.62 E-value=4 Score=40.51 Aligned_cols=69 Identities=14% Similarity=0.263 Sum_probs=46.1
Q ss_pred HHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 017082 121 ILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMT 193 (377)
Q Consensus 121 ilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~ 193 (377)
++|+++|-+-|+.-+.+. +-.+..+.++-|..|.+++++++.+.-- ..++.++..-. +.-...+..-+.
T Consensus 179 iiG~iLGNLD~~~r~fl~-~~~~~lIPF~~f~lGa~inl~~i~~aGl--~GIlLgv~~~~-vtg~~~~~~dr~ 247 (314)
T PF03812_consen 179 IIGMILGNLDPDFRKFLA-PGVPILIPFFGFALGAGINLSNIIKAGL--SGILLGVIVVV-VTGIPLYLADRL 247 (314)
T ss_pred HHHHHHhcCCHHHHHHHh-cCCCeeeehhhhhhcCCCCHHHHHHhCc--chHHHHHHHHH-HHhHHHHHHHHH
Confidence 478888888888776665 6667778888999999999999886543 24555555433 223333444444
No 51
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=86.50 E-value=1.9 Score=43.12 Aligned_cols=131 Identities=12% Similarity=0.141 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017082 118 VWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLS 197 (377)
Q Consensus 118 l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~ 197 (377)
+.+++|..+|-+.+...+..+ +-.++++.+..|..|.++++.++.+.- +..++++.. +.++.+.+.+...++++.+
T Consensus 178 lplliG~~lgnl~~~l~~~~~-~Gi~~lLp~~~~~lG~~l~lq~i~~~G--~~GilL~~~-~~~~t~~~~~~~~Rl~~~~ 253 (326)
T PRK05274 178 LPLLVGFILGNLDPELRQFLG-KAVPVLIPFFAFALGNGIDLGTIITAG--LSGILLGVA-VVAVTGIPLYLADRLIGGG 253 (326)
T ss_pred HHHHHHHHHHhHHHhhHHHhc-CCcEEEHHHHHHHHhcceeHhHHHhcC--Ccchhhhhh-HhhccchhhHhHhheeecC
Confidence 444566666665554433333 334446777778899999998886543 233443333 4455667778888888654
Q ss_pred hh---hhhhhhhcccCCchhHH-HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082 198 AP---LATGLILVSCCPGGQAS-NVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253 (377)
Q Consensus 198 ~~---l~~GliLlaa~P~~~~s-~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~ 253 (377)
+. .+.+.-- +.+=|+++. ....-..+...+-+...+....+++.+..|++..++.
T Consensus 254 ~g~~g~a~~tta-G~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~ 312 (326)
T PRK05274 254 NGVAGAAAGSTA-GNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWS 312 (326)
T ss_pred CCcchHHHHHHH-HHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 2211111 111111111 1122233445555555555555566666666665543
No 52
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=86.13 E-value=2.4 Score=42.06 Aligned_cols=83 Identities=16% Similarity=0.354 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhh-------hHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHHH
Q 017082 271 VVLVPTVVGVLANEFFPKFTSKIISVT-------PLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGY 343 (377)
Q Consensus 271 vVllPl~lG~llr~~~p~~~~~i~~~~-------~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf~lGy 343 (377)
-..+.+++|++++.++.+..++.++-. -.+++.++ . ..-+..++.+.++..++...+.....+.++|
T Consensus 28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLl----G--~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~ 101 (305)
T PF03601_consen 28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLL----G--FRLSFSDILALGWKGLLIIIIVVILTFLLTY 101 (305)
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHH----C--ccccHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 356777899999973222222222211 12232222 1 1123345566777666666777788999999
Q ss_pred HHh-hc-CCCccceeeee
Q 017082 344 WLS-KI-SFGESTSRTIS 359 (377)
Q Consensus 344 ~l~-r~-~~~~~~~rtls 359 (377)
+++ |+ |+|++.+.-++
T Consensus 102 ~lg~r~~~l~~~~~~Lia 119 (305)
T PF03601_consen 102 WLGRRLFGLDRKLAILIA 119 (305)
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 999 77 88776544444
No 53
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=85.80 E-value=37 Score=33.26 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=54.6
Q ss_pred HHHHHHHHHH-Hh--ccc-hhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH-
Q 017082 118 VWVILGTIIG-IY--KPS-AVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAM- 192 (377)
Q Consensus 118 l~vilgvllg-~~--~P~-~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~- 192 (377)
..+.+|.++| .. +++ ..+.+.+-...+++..++|....+.+.++-.. ..+ .........+...-++++.+++
T Consensus 15 ~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~ 91 (321)
T TIGR00946 15 VVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQK--SQS-PVVLFLWGAFSGSYALIWLITKP 91 (321)
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344677774 32 333 33445545566777777777666644331111 111 2222233344455677788887
Q ss_pred HhCCChhhhhhhhhcccCCchh--HHHHHHHHcCCCh
Q 017082 193 TLKLSAPLATGLILVSCCPGGQ--ASNVATYISKGNV 227 (377)
Q Consensus 193 ~~~l~~~l~~GliLlaa~P~~~--~s~v~t~~agGd~ 227 (377)
.++.+........+.++.+=.. .-++.....|-|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~~ 128 (321)
T TIGR00946 92 LFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEG 128 (321)
T ss_pred HHhcccchhhHHHHHhhhccceeehHHHHHHHhcccc
Confidence 6676766665665555544322 2234555554443
No 54
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=84.76 E-value=9.8 Score=38.01 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHH--hh-HHHHHHhhhhhHHHHHHHHHHHHhhhhhhh--hHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 017082 271 VVLVPTVVGVLANEF--FP-KFTSKIISVTPLIGVILTTLLCASPIGQVS--AVLKTQGAQLIFPVALLHAAAFALGYWL 345 (377)
Q Consensus 271 vVllPl~lG~llr~~--~p-~~~~~i~~~~~~is~l~llvli~~~i~~~~--~~l~~~~~~i~~~~~ll~~~gf~lGy~l 345 (377)
-+++=+++|.+++++ ++ +..+.+.+..-. +++=.+++..++... +.+. ..+.+.+...+...+++.+++..
T Consensus 8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~---~~lP~liF~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 83 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFGILDPEASKGLSKLVFN---VFLPALIFSSIANTDTLEDLL-SLWFIPVFAFIIFILGLLLGFLL 83 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHhccchhhhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566889888876 22 333333333222 233333444444321 1111 22233444556678888999999
Q ss_pred hhc-CCCccceeeeeeecccccHH
Q 017082 346 SKI-SFGESTSRTISIECGMQVCI 368 (377)
Q Consensus 346 ~r~-~~~~~~~rtlsi~~G~qN~~ 368 (377)
.|. +.+++++......++..|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~N~~ 107 (385)
T PF03547_consen 84 SRLFRLPKEWRGVFVLAASFGNTG 107 (385)
T ss_pred HHhcCCCcccceEEEecccCCcch
Confidence 997 78888888888888888875
No 55
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=84.46 E-value=18 Score=38.80 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcccCChHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH
Q 017082 141 LFTIGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN 217 (377)
Q Consensus 141 ~~~~~l~l~mf~~Gl~l~~~~l~~~~~~-pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~ 217 (377)
.-...+.+-+|.+|++.-+.=++...++ .+....+++. .++.=++++++.+++++++..+.|++-=+..-++....
T Consensus 59 v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~-~~~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~a 135 (562)
T TIGR03802 59 VKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVF-AVSGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGT 135 (562)
T ss_pred HHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHH
Confidence 3467788888999999999888766665 3444444443 33444668888899999999999998766655444443
No 56
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=83.93 E-value=7.1 Score=38.72 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=40.1
Q ss_pred HHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHH
Q 017082 121 ILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLA 178 (377)
Q Consensus 121 ilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~ 178 (377)
++|.++|-+-|+.-+.+. +..+..+.++-|..|.+++++++.+.-- ..++.++..
T Consensus 179 liG~ilGNLD~~~r~fl~-~~~~~lIpFf~FaLGaginl~~i~~aGl--~GIlLGl~v 233 (314)
T TIGR00793 179 LVGFALGNLDPELRDFFS-KAVQTLIPFFAFALGNTIDLGVIIQTGL--LGILLGVSV 233 (314)
T ss_pred HHHHHHhcCCHHHHHHhc-cCCCeeeehhhhhhcCCCCHHHHHHhCc--chHHHHHHH
Confidence 468888888888776665 6667788888999999999999876422 245555543
No 57
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=83.09 E-value=41 Score=36.38 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hhhhhhhcccCCchhHHH
Q 017082 140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP--LATGLILVSCCPGGQASN 217 (377)
Q Consensus 140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~--l~~GliLlaa~P~~~~s~ 217 (377)
++-...+.+.+..+|+++++..+.+ +|..+....+.-++..++..++.++.++.+.. ...|+. ..|.|-.+.
T Consensus 265 pf~~lll~lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~---L~~~Gef~~ 338 (601)
T PRK03659 265 PFKGLLLGLFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGV---LSQGGEFAF 338 (601)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HhccccHHH
Confidence 3445667777779999999987764 34455545555677888889999999888764 445544 366677776
Q ss_pred HHHHHcC--CChh-HHHHHHHHHHHHHHHHHHHHHHH
Q 017082 218 VATYISK--GNVA-LSVLMTTCSTIGAIVMTPLLTKL 251 (377)
Q Consensus 218 v~t~~ag--Gd~a-La~~~t~~stllav~~iPl~l~l 251 (377)
++...+. |-.+ -.....+...+++.+++|++..+
T Consensus 339 vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~ 375 (601)
T PRK03659 339 VLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKL 375 (601)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5533221 2111 11222355566666778877655
No 58
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=82.82 E-value=37 Score=30.77 Aligned_cols=107 Identities=20% Similarity=0.284 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhc-------cchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHH
Q 017082 118 VWVILGTIIGIYK-------PSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKPMLGFV 189 (377)
Q Consensus 118 l~vilgvllg~~~-------P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~-pk~l~~~lv~~~vl~Pll~~~ 189 (377)
-.++.|+++|.+. |....+ ..-...+.+-++..|++--.+-+....++ .+.+..+.+. .++-.++++.
T Consensus 28 G~L~vgL~~G~~~~~~~~~~~~~~~~---~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i-~~~~~~~~~~ 103 (169)
T PF06826_consen 28 GVLFVGLILGALGRTGPIFLPISAPS---FLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVII-TLVPLLIALV 103 (169)
T ss_pred HHHHHHHHHHHhhhccCCCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHH
Confidence 4456788888883 443222 23466777778888888877555444444 2444444443 3344556788
Q ss_pred HHH-HhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChh
Q 017082 190 IAM-TLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA 228 (377)
Q Consensus 190 l~~-~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~a 228 (377)
+++ ++++|+....|.+-=+-.-++.....-....+.|.+
T Consensus 104 ~~~~~~~l~~~~~~G~~aGa~T~tp~L~~A~~~~~~~~~~ 143 (169)
T PF06826_consen 104 IGRYLFKLNPGIAAGILAGALTSTPALAAAQEAISDSGIP 143 (169)
T ss_pred HHHHHcCCCHHHHHHHHHccccCcHHHHHHHHhhhcCCCc
Confidence 887 899999999988754444444443333332444433
No 59
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=82.34 E-value=64 Score=33.24 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHh---ccchhhh---hhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHH-----HHHHHHHHH
Q 017082 116 FPVWVILGTIIGIY---KPSAVTW---LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIG-----FLAQYLIKP 184 (377)
Q Consensus 116 ~~l~vilgvllg~~---~P~~~~~---l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~-----lv~~~vl~P 184 (377)
.|-.++.|.+.++. .|+...+ +...+....+...+-++|++-+++++++.-+ |-..... .+.|+
T Consensus 34 IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~~lm~~fFatigLga~~~~l~~gg~-~l~~~~~~~~~l~~~Qn---- 108 (398)
T TIGR00210 34 IPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRDPLMLIFFTTIGLSANFKSLLKGGK-PLLIFLATAVGFLVIQN---- 108 (398)
T ss_pred CchHHHHHHHHHHHHHHHHHhccEEEEcChhHHHHHHHHHHHHhhhcCChHHHHhChH-HHHHHHHHHHHHHHHHH----
Confidence 67777777664222 3443221 2223344455445558888888888775432 1111111 12344
Q ss_pred HHHHHHHHHhCCChhhhhhh--hhcccCCc--hhHHHHHHHH--cCCChhHHHHHHHHHHHHHHHH-HHHHHHHhcC---
Q 017082 185 MLGFVIAMTLKLSAPLATGL--ILVSCCPG--GQASNVATYI--SKGNVALSVLMTTCSTIGAIVM-TPLLTKLLAG--- 254 (377)
Q Consensus 185 ll~~~l~~~~~l~~~l~~Gl--iLlaa~P~--~~~s~v~t~~--agGd~aLa~~~t~~stllav~~-iPl~l~ll~g--- 254 (377)
.++.+++..++++|....-. +=+.-=.+ +.....+.+. ..+-.++++...++..+.+.+. .|+.-.+...
T Consensus 109 ~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk~~l 188 (398)
T TIGR00210 109 AVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSPVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIRNKL 188 (398)
T ss_pred HHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45667778888887643221 11111122 2233344444 3334445555556666666655 6775543310
Q ss_pred --c--c----c-----------ccChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017082 255 --Q--L----V-----------PVDAAGLAISTFQVVLVPTVVGVLANEFFP 287 (377)
Q Consensus 255 --~--~----v-----------~vd~~~i~~~Ll~vVllPl~lG~llr~~~p 287 (377)
+ . . ..|.......+ ..+.+-+.+|..+.++.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~i~iai~iG~~i~~~l~ 239 (398)
T TIGR00210 189 EPNCENDTKDVTIGFERPQDNRQITYNSLIETI-ALIAVCLLVGYELNDLVA 239 (398)
T ss_pred CCCCCcccccccccccccccccccCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 0 0 0 01222333343 467777788888777654
No 60
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=80.73 E-value=0.16 Score=50.76 Aligned_cols=161 Identities=24% Similarity=0.409 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhccch----hhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHH--HHHHH
Q 017082 118 VWVILGTIIGIYKPSA----VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPML--GFVIA 191 (377)
Q Consensus 118 l~vilgvllg~~~P~~----~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll--~~~l~ 191 (377)
..++.|+++|...-.. ..+.+ ....+++.++||..|.++|.+++++..++. +..+.. .+ ..|.. ++.+.
T Consensus 25 ~~i~~Gi~lg~~~~~~~~~~~~~~~-~l~~i~l~~llF~~G~~~d~~~l~~~~~~~--~~~~~~-~~-~~~~~~~~~~~~ 99 (380)
T PF00999_consen 25 GYILVGIVLGPSGLGLLEPDNPSFE-LLAEIGLAFLLFEAGLELDIKELRRNWRRA--LALGLV-GF-LLPFILVGFLLS 99 (380)
T ss_dssp -----------------------S--SSHHHHS--SSHHHHTTGGGG---------------------------------
T ss_pred HHHHheeehhhhhhhhccchhhHHH-HHHHHHHHHHHHHHHHhhcccccccccccc--cccccc-ee-eehhhHHHHHHH
Confidence 4445677777653221 12333 567889999999999999999998877652 222222 22 22332 33333
Q ss_pred H---HhCC--ChhhhhhhhhcccCCchhHHHHH-HHHcCCChh-HHHHHHHHHHHHHHHHHHHHHHHhcCcccccChHHH
Q 017082 192 M---TLKL--SAPLATGLILVSCCPGGQASNVA-TYISKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGL 264 (377)
Q Consensus 192 ~---~~~l--~~~l~~GliLlaa~P~~~~s~v~-t~~agGd~a-La~~~t~~stllav~~iPl~l~ll~g~~v~vd~~~i 264 (377)
. ..+. ......|.++....|......+- ....+++.. .......++.+.+.+...+..... ++....+....
T Consensus 100 ~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~-~~~~~~~~~~~ 178 (380)
T PF00999_consen 100 FFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA-QASGQSSLGQL 178 (380)
T ss_dssp --------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-------------------
T ss_pred HhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhh-cccccccccch
Confidence 2 2232 33455666665555555544442 222233332 344556777888887777776665 33344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017082 265 AISTFQVVLVPTVVGVLANE 284 (377)
Q Consensus 265 ~~~Ll~vVllPl~lG~llr~ 284 (377)
.......+..=.+.|...++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~ 198 (380)
T PF00999_consen 179 LLSFLWIILIGIVIGLLFGW 198 (380)
T ss_dssp --------------------
T ss_pred hcchhhhhhhheeeecccch
Confidence 44443344333344444433
No 61
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=80.66 E-value=45 Score=35.85 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcccCChHHHHHHhcC-ChHHHHHHHHHHHHHH-HHHHHHH-HHhCCChhhhhhhhhcccCCchhHHHHHH
Q 017082 144 IGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKP-MLGFVIA-MTLKLSAPLATGLILVSCCPGGQASNVAT 220 (377)
Q Consensus 144 ~~l~l~mf~~Gl~l~~~~l~~~~~~-pk~l~~~lv~~~vl~P-ll~~~l~-~~~~l~~~l~~GliLlaa~P~~~~s~v~t 220 (377)
+.+.+-++..|++--.+-+....++ .+....+.++ .+.| ++++.++ +++++++....|.+ .++.-.++.-....
T Consensus 452 ~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~~-aG~~t~t~~l~~a~ 528 (562)
T TIGR03802 452 LGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVV--TILPLIITMLIGKYVLKYDPALLLGAL-AGARTATPALGAVL 528 (562)
T ss_pred HhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHh-hccCCCcHHHHHHH
Confidence 4455555567776665555443332 2333444443 3445 5677777 68999999999984 44444333334444
Q ss_pred HHcCCCh-hHHHHHH-HHHHHHHHHHHHHHHH
Q 017082 221 YISKGNV-ALSVLMT-TCSTIGAIVMTPLLTK 250 (377)
Q Consensus 221 ~~agGd~-aLa~~~t-~~stllav~~iPl~l~ 250 (377)
...+.|. +.+-..+ .+++++-++..|+++.
T Consensus 529 ~~~~~~~~~~gYa~~Yp~~~i~~il~~~~iv~ 560 (562)
T TIGR03802 529 ERAGSSVPALGYTITYALGNVLLTLLGPLIVA 560 (562)
T ss_pred HhcCCCCcccchHhHHHHHHHHHHHHHHHHHH
Confidence 4554432 2222222 4556665666665543
No 62
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=80.64 E-value=66 Score=32.31 Aligned_cols=130 Identities=22% Similarity=0.380 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhccchhh--hhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHH-HHHHHHHHHHHHHHHHHHHHHh
Q 017082 118 VWVILGTIIGIYKPSAVT--WLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTV-GIGFLAQYLIKPMLGFVIAMTL 194 (377)
Q Consensus 118 l~vilgvllg~~~P~~~~--~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l-~~~lv~~~vl~Pll~~~l~~~~ 194 (377)
-.+++|+..|-+-|+... .+.+.+.-..+.++||++|+..+.+|+.... .+ .-+.+.|..+.-+.++++.+..
T Consensus 35 GyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk----~iAipgAl~qia~at~lg~gL~~~l 110 (408)
T COG4651 35 GYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVK----AIAIPGALAQIALATLLGMGLSSLL 110 (408)
T ss_pred HHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHH----HHhcchHHHHHHHHHHHHhHHHHHc
Confidence 345567777766666432 2323455678899999999999999997642 22 3356678888888899999887
Q ss_pred CCChhhhhhhhhcccCCchhHHHHH-HHHcCC-------ChhHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 017082 195 KLSAPLATGLILVSCCPGGQASNVA-TYISKG-------NVALSV-LMTTCSTIGAIVMTPLLTKLLA 253 (377)
Q Consensus 195 ~l~~~l~~GliLlaa~P~~~~s~v~-t~~agG-------d~aLa~-~~t~~stllav~~iPl~l~ll~ 253 (377)
+.+ .-.|+++=-|...++..... +.+-++ ..+..- .+-=+..+++.+..|.+--.+.
T Consensus 111 gws--~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g 176 (408)
T COG4651 111 GWS--FGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLG 176 (408)
T ss_pred CCC--cccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence 653 34455554555555555433 333333 322221 1223445566677777666555
No 63
>PRK04972 putative transporter; Provisional
Probab=79.72 E-value=53 Score=35.31 Aligned_cols=78 Identities=9% Similarity=0.132 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcccCChHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHH
Q 017082 141 LFTIGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVA 219 (377)
Q Consensus 141 ~~~~~l~l~mf~~Gl~l~~~~l~~~~~~-pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~ 219 (377)
...+.+.+-++.+|++--.+=+....++ .+....+.+. .++.-++++.+.+++++++..+.|++-=+..-++.....-
T Consensus 61 ~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~a~ 139 (558)
T PRK04972 61 ALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVM-VGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAG 139 (558)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHhhccccCcHHHHHHH
Confidence 3456777778888988887777655554 3344444332 3333456777888999999999998766555444444443
No 64
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=78.39 E-value=78 Score=31.81 Aligned_cols=228 Identities=18% Similarity=0.196 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCC----hHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH-
Q 017082 119 WVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLT----FEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMT- 193 (377)
Q Consensus 119 ~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~----~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~- 193 (377)
..++|++.+...-+.-- -.......-..+|+.+|++=- -..+.+.. ..+..++... +++|+.+|.+.+-
T Consensus 5 FF~LG~~A~~~kSdL~i--P~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~---~~~~~~~~lg-~liPl~~~~iLr~~ 78 (327)
T PF05982_consen 5 FFILGIIAALLKSDLEI--PEAIYKFLSIYLLLAIGLKGGVELAHSGLTALL---LPLLAAVLLG-ILIPLIAFPILRRL 78 (327)
T ss_pred HHHHHHHHHHHcCCCcC--ChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 34567777766433210 001222233344667776533 23333321 2233344433 4679999988775
Q ss_pred hCCChhhhhh-hhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHH---HHHHHHHHHHHhcCcc-------------
Q 017082 194 LKLSAPLATG-LILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG---AIVMTPLLTKLLAGQL------------- 256 (377)
Q Consensus 194 ~~l~~~l~~G-liLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stll---av~~iPl~l~ll~g~~------------- 256 (377)
.+++..-+.+ ---.++....+.....+.+..-+.++---|+..-.+. ++++-=++..+..++.
T Consensus 79 ~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~~~~~~ 158 (327)
T PF05982_consen 79 GKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQAAGATASSTRVGA 158 (327)
T ss_pred cCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCcccccc
Confidence 5677654444 3456777777777778888777777777666554444 2222111222222111
Q ss_pred ----cccChHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHhhhhhH-H-HHHHHHHH-HHhhhhhhhhHHhhhc
Q 017082 257 ----VPVDAAGLAISTF-----QVVLVPTVVGVLANEFFPKFTSKIISVTPL-I-GVILTTLL-CASPIGQVSAVLKTQG 324 (377)
Q Consensus 257 ----v~vd~~~i~~~Ll-----~vVllPl~lG~llr~~~p~~~~~i~~~~~~-i-s~l~llvl-i~~~i~~~~~~l~~~~ 324 (377)
-+.+..++....+ ..++--+++|++.+. +-.+.++++... + +++++.++ +....++....++..+
T Consensus 159 ~~~~~~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~---~g~~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g 235 (327)
T PF05982_consen 159 GSGHEGISWGELLHESLTNKSVVLLLGGLIIGFLAGP---EGVESIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRKVG 235 (327)
T ss_pred ccccccccHHHHHHHHHcCchHHHHHHHHHHhheeCc---cchhhccchhhccHHHHHHHHHHHhhHHHHHhhHHHHhhh
Confidence 1244555554432 234444555554442 333445555322 1 44555444 3444555666778888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-CCCccce
Q 017082 325 AQLIFPVALLHAAAFALGYWLSKI-SFGESTS 355 (377)
Q Consensus 325 ~~i~~~~~ll~~~gf~lGy~l~r~-~~~~~~~ 355 (377)
+..+.-.++++.++-.+|..+++. |++..+.
T Consensus 236 ~~li~Fgi~~Pli~a~ig~~lg~~~gls~Gg~ 267 (327)
T PF05982_consen 236 WFLIAFGILMPLINALIGIGLGWLLGLSPGGA 267 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCccH
Confidence 888888888999999999999988 8877653
No 65
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=78.37 E-value=25 Score=35.24 Aligned_cols=130 Identities=27% Similarity=0.279 Sum_probs=76.7
Q ss_pred CCCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchh-hhhh---HhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHH
Q 017082 100 GGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAV-TWLE---TDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIG 175 (377)
Q Consensus 100 ~~~~~~~~~~~~l~~~~~l~vilgvllg~~~P~~~-~~l~---~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~ 175 (377)
++.++.+-+.|.+.+.-.+.++-|.++|+...+.+ +.++ .+...-.+.+-++-||+.- .+++++.. .....
T Consensus 163 ~~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~G~L~lFLLeMGl~A-~~rL~~l~----~~g~~ 237 (327)
T PF05982_consen 163 EGISWGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFKGVLCLFLLEMGLVA-ARRLRDLR----KVGWF 237 (327)
T ss_pred ccccHHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHHHHHHHHHHHhhHHH-HHhhHHHH----hhhHH
Confidence 45667777788888888888888999999865432 2121 2455566777778888753 33333322 22222
Q ss_pred HHHHHHHHHHH----HHHHHHHhCCChhhhhhhhhcccCCchhHHHHH--HHHcCCChhHHHHHH
Q 017082 176 FLAQYLIKPML----GFVIAMTLKLSAPLATGLILVSCCPGGQASNVA--TYISKGNVALSVLMT 234 (377)
Q Consensus 176 lv~~~vl~Pll----~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~--t~~agGd~aLa~~~t 234 (377)
++.-=+++|++ +++++++.+++..-..-+..+++.-.=.+.+.. ...=+.|..+.+.+.
T Consensus 238 li~Fgi~~Pli~a~ig~~lg~~~gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~S 302 (327)
T PF05982_consen 238 LIAFGILMPLINALIGIGLGWLLGLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTAS 302 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHH
Confidence 22223467764 556667777777655555555554444444432 455577777766554
No 66
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=78.20 E-value=26 Score=34.75 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=60.1
Q ss_pred HHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhH
Q 017082 150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVAL 229 (377)
Q Consensus 150 mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aL 229 (377)
+++.|...|+. ..+.|||.++.+-..|+.++ ..+..+..++..+..+..+-+.+.+=+.++-++-+.++. |.--
T Consensus 91 FmGvGAmTDFg---pllanPktllLGaAAQ~GIF--~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~LAP-~Ll~ 164 (375)
T COG1883 91 FMGVGAMTDFG---PLLANPKTLLLGAAAQFGIF--ATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKLAP-ELLG 164 (375)
T ss_pred Hhccchhcccc---hhhcCcHHHHhhhHHHhchH--HHHHHHHHhCCCHhhhhheeeeccCCCCceEEeccccCH-HHHH
Confidence 45666655554 45679999999999999875 455556677888887777777777765555444333332 1111
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhc
Q 017082 230 SVLMTTCS-TIGAIVMTPLLTKLLA 253 (377)
Q Consensus 230 a~~~t~~s-tllav~~iPl~l~ll~ 253 (377)
++....-| .-+-++.=|-.++.+.
T Consensus 165 ~iAvAAYSYMALVPiIQPpimkaLT 189 (375)
T COG1883 165 AIAVAAYSYMALVPIIQPPIMKALT 189 (375)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHhc
Confidence 22222222 2235566677777775
No 67
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.07 E-value=82 Score=33.53 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hhhhhhhhcccCCchhHHHHHH
Q 017082 143 TIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSA--PLATGLILVSCCPGGQASNVAT 220 (377)
Q Consensus 143 ~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~--~l~~GliLlaa~P~~~~s~v~t 220 (377)
...+.+.+...|+++++..+.+ ++..+...++..++..++..++.++.++.+. ....|+.+ ++.|-.+.+..
T Consensus 279 ~~f~plFFv~~G~~~d~~~l~~---~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l---~~~Gef~lii~ 352 (558)
T PRK10669 279 DAFAVLFFVSVGMLFDPMILIQ---QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASL---AQIGEFAFILA 352 (558)
T ss_pred HHHHHHHHHHhhhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH---hcccchHHHHH
Confidence 4456666678899999988764 3333444444566677777787788877554 35556554 44455555443
Q ss_pred HH--cCCChh-HHHHHHHHHHHHHHHHHHHHHHH
Q 017082 221 YI--SKGNVA-LSVLMTTCSTIGAIVMTPLLTKL 251 (377)
Q Consensus 221 ~~--agGd~a-La~~~t~~stllav~~iPl~l~l 251 (377)
.. ..|-.+ -.....+..++++.+++|++...
T Consensus 353 ~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 353 GLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222222 22233556666777778877654
No 68
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=77.64 E-value=3.6 Score=41.80 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=90.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhccch---------hhhhhH---hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHH
Q 017082 108 IIEILTTLFPVWVILGTIIGIYKPSA---------VTWLET---DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIG 175 (377)
Q Consensus 108 ~~~~l~~~~~l~vilgvllg~~~P~~---------~~~l~~---~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~ 175 (377)
..|.+-++...+.+++.++|..-|-- ...++. ..-..++..++...|-++-.+- ++.-.+.|.+...
T Consensus 241 ~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~-~ss~~~~~~iigi 319 (408)
T KOG2722|consen 241 ILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGL-RSSALKTSVIIGI 319 (408)
T ss_pred hHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCc-hhcccCceEEEEE
Confidence 34445567778888888888754421 111111 2234566677777787775443 2333345555556
Q ss_pred HHHHHHHHHHHHHHHHHHh---C----CChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 017082 176 FLAQYLIKPMLGFVIAMTL---K----LSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLL 248 (377)
Q Consensus 176 lv~~~vl~Pll~~~l~~~~---~----l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~ 248 (377)
.+.+++++|+.+.++.... + .||-+...+++.-+.|++....-+|++.|--..-+.....-+-..+.+-.-+|
T Consensus 320 ii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw 399 (408)
T KOG2722|consen 320 IIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTVW 399 (408)
T ss_pred EEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 6779999999999886653 2 35668899999999999999999999988765555555544444444443333
No 69
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=73.92 E-value=18 Score=31.34 Aligned_cols=89 Identities=26% Similarity=0.288 Sum_probs=52.3
Q ss_pred CcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCC-----hHHHHHH
Q 017082 102 MSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNP-----WTVGIGF 176 (377)
Q Consensus 102 ~~~~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~p-----k~l~~~l 176 (377)
|+.++.+.+|+.+.=-+=++.|+++|-.+-...+.+..+.+.+.+. +..-| .+++++.-.+..+ ....+..
T Consensus 1 m~mlkeFkeF~~RGNVvDLAVgVIIGaAFg~IV~SlV~diImPlIg--~~~gg--~dfs~l~~~l~~~~~~i~yG~Fi~~ 76 (130)
T COG1970 1 MSMLKEFKEFALRGNVVDLAVGVIIGAAFGKIVTSLVNDIIMPLIG--LLVGG--LDFSNLFITLGIPAVVIAYGAFIQA 76 (130)
T ss_pred CcHHHHHHHHHHccChhhHHHHHHhHHHHHHHHHHHHHHHHHhhhh--hhcCC--cChhhheeecCCCceeeeHhHHHHH
Confidence 5678888888865444444556666655544444443355556655 22233 7777776555411 2345566
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 017082 177 LAQYLIKPMLGFVIAMTL 194 (377)
Q Consensus 177 v~~~vl~Pll~~~l~~~~ 194 (377)
++||++.-...|++.+..
T Consensus 77 vinFlIiAf~iFl~Vk~i 94 (130)
T COG1970 77 VINFLIIAFAIFLVVKAI 94 (130)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888777666666554
No 70
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=73.89 E-value=62 Score=28.83 Aligned_cols=101 Identities=18% Similarity=0.257 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcc---------chhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCC--hHHHHHHHHHHHHHH-H
Q 017082 118 VWVILGTIIGIYKP---------SAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNP--WTVGIGFLAQYLIKP-M 185 (377)
Q Consensus 118 l~vilgvllg~~~P---------~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~p--k~l~~~lv~~~vl~P-l 185 (377)
-.++.|+++|.+-+ ..... ..-...+.+-++.+|++--.+-+....++. +.+..+.+. .+.| +
T Consensus 26 G~L~vgL~~G~~~~~~p~~~~~p~~~~~---~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v--~~~~~~ 100 (154)
T TIGR01625 26 GVLFVGLLLGHFGATGPLTWYIPFSANL---FIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI--TVVPTL 100 (154)
T ss_pred HHHHHHHHHHhccccCCcceecChhHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH--HHHHHH
Confidence 34467788887754 21111 233566666677888887766665444433 233333332 2333 3
Q ss_pred HHHH-HHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcC
Q 017082 186 LGFV-IAMTLKLSAPLATGLILVSCCPGGQASNVATYISK 224 (377)
Q Consensus 186 l~~~-l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~ag 224 (377)
+.+. ..+++++++....|. +.++.-.++.-....+..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~G~-~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 101 LVAVALIKLLRINYALTAGM-LAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHhCCCHHHHHHH-HhccccChHHHHHHHHHhc
Confidence 3333 346799999998888 4455444444444455554
No 71
>PRK03818 putative transporter; Validated
Probab=73.86 E-value=1.1e+02 Score=32.84 Aligned_cols=101 Identities=10% Similarity=0.088 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhccchhh----hhhHhHHHHHHHHHHHHhcccCChHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHH
Q 017082 117 PVWVILGTIIGIYKPSAVT----WLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKPMLGFVIA 191 (377)
Q Consensus 117 ~l~vilgvllg~~~P~~~~----~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~-pk~l~~~lv~~~vl~Pll~~~l~ 191 (377)
-..++.|+++|.+.+.... ......-.+.+.+-++.+|++--.+-+....++ .+....+.+. .++.-++++.+.
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~-~~~~~~~~~~~~ 112 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLI-VILGGLVTAILH 112 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3445567777775432211 011013356777778889998887777655443 3344444443 233345577778
Q ss_pred HHhCCChhhhhhhhhcccCCchhHHHH
Q 017082 192 MTLKLSAPLATGLILVSCCPGGQASNV 218 (377)
Q Consensus 192 ~~~~l~~~l~~GliLlaa~P~~~~s~v 218 (377)
+++++++....|++-=+..-++.....
T Consensus 113 ~~~~~~~~~~~G~~aGa~T~tp~l~aa 139 (552)
T PRK03818 113 KLFGIPLPVMLGIFSGAVTNTPALGAG 139 (552)
T ss_pred HHhCCCHHHHHHHhhccccccHHHHHH
Confidence 889999998888776555444444333
No 72
>PRK03818 putative transporter; Validated
Probab=72.99 E-value=97 Score=33.28 Aligned_cols=106 Identities=21% Similarity=0.242 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcccCChHHHHHHhcC--ChHHHHHHHHHHHHHHH-HHHHHH-HHhCCChhhhhhhhhcccCCchhHHHH
Q 017082 143 TIGLGFLMLSMGLTLTFEDFRRCLRN--PWTVGIGFLAQYLIKPM-LGFVIA-MTLKLSAPLATGLILVSCCPGGQASNV 218 (377)
Q Consensus 143 ~~~l~l~mf~~Gl~l~~~~l~~~~~~--pk~l~~~lv~~~vl~Pl-l~~~l~-~~~~l~~~l~~GliLlaa~P~~~~s~v 218 (377)
.+.+.+-+...|++--..-+....+. ++....+.+. .+.|. +++.++ +++++++....|. +.++.-.++.-+.
T Consensus 436 ~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v--~~~~~~~~~~~~~~~~~~~~~~~~G~-~aG~~t~tp~l~~ 512 (552)
T PRK03818 436 ELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLI--TAVPLLIVGILARMLAKMNYLTLCGM-LAGSMTDPPALAF 512 (552)
T ss_pred HHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHH-HhccCCCcHHHHH
Confidence 34555555566776655555443443 2233334443 33444 566665 6799999998888 4455444444344
Q ss_pred HHHH-cCCC-hhHHHHHH-HHHHHHHHHHHHHHHHH
Q 017082 219 ATYI-SKGN-VALSVLMT-TCSTIGAIVMTPLLTKL 251 (377)
Q Consensus 219 ~t~~-agGd-~aLa~~~t-~~stllav~~iPl~l~l 251 (377)
.+.. .+.| ++.+-..+ .++++.-+++.++++.+
T Consensus 513 a~~~~~~~~~~~~gYa~~Yp~~~~~~i~~~~~~~~~ 548 (552)
T PRK03818 513 ANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVL 548 (552)
T ss_pred HhcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4553 5555 33333333 34555555556655443
No 73
>COG3329 Predicted permease [General function prediction only]
Probab=72.49 E-value=18 Score=36.12 Aligned_cols=158 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCceeeeecCCcchhhhhccccceeccCCCCceeeecccccCCCCCCCCCC-CCcHHHHHHHHhhhHHHHHHHHHHHHH
Q 017082 49 DHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPG-GMSQYEQIIEILTTLFPVWVILGTIIG 127 (377)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~l~vilgvllg 127 (377)
|+.|+-+-+..+...+++-..+....+++++++..- |...++ +..-||-++|-+-+.-.+.++.|+++|
T Consensus 161 ~~k~s~aa~~~s~~~vA~~e~g~~~d~~ssr~~~~~----------~~~~ed~~v~~~ell~Esflnpal~lllggl~iG 230 (372)
T COG3329 161 DEKRSAAAEAHSKQLVAAGEYGDQTDLASSRQEYLS----------PQWGEDNRVKIWELLQESFLNPALVLLLGGLAIG 230 (372)
T ss_pred ccccccccccccccchhhcccCchhhhhhhhhhhcc----------cccCcccchhhHHHHHHHHcCchHHHHHHHHHHh
Q ss_pred Hhc-----cchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhh
Q 017082 128 IYK-----PSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLAT 202 (377)
Q Consensus 128 ~~~-----P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~ 202 (377)
+.- +..-.... +...-.+.+.|+-||++ ..+++++..+....+.+--+..=++.-.+++++++..+.+..++.
T Consensus 231 litGe~g~~vl~~F~~-~lFqGvL~lflL~MGm~-A~rrl~elrk~g~~~v~fgllaPil~g~ig~~lg~~a~y~tgfs~ 308 (372)
T COG3329 231 LITGEQGESVLKPFFD-PLFQGVLCLFLLDMGMT-AGRRLKELRKVGQGLVLFGLLAPILHGFIGLLLGMIAGYPTGFSD 308 (372)
T ss_pred heeccCchhhhhhhhH-HHHHHHHHHHHHHHhHH-HHHHHHHHHhcCcceehHHHHHHHHHHHHHHHHHHHhcccccCCC
Q ss_pred hhhhcccCCchhHHHH
Q 017082 203 GLILVSCCPGGQASNV 218 (377)
Q Consensus 203 GliLlaa~P~~~~s~v 218 (377)
|-..+.+.=++++|.+
T Consensus 309 g~~vllAVlaaSaSyI 324 (372)
T COG3329 309 GGVVLLAVLAASASYI 324 (372)
T ss_pred cchHHHHHHhcchhhc
No 74
>PRK04972 putative transporter; Provisional
Probab=69.85 E-value=95 Score=33.39 Aligned_cols=105 Identities=14% Similarity=0.190 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcccCChHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHH-HHhCCChhhhhhhhhcccCCchhHHHHH
Q 017082 143 TIGLGFLMLSMGLTLTFEDFRRCLRN--PWTVGIGFLAQYLIKPMLGFVIA-MTLKLSAPLATGLILVSCCPGGQASNVA 219 (377)
Q Consensus 143 ~~~l~l~mf~~Gl~l~~~~l~~~~~~--pk~l~~~lv~~~vl~Pll~~~l~-~~~~l~~~l~~GliLlaa~P~~~~s~v~ 219 (377)
.+.+.+-+...|++--..-+ +.+++ ++.+..+.++. ++..++++.++ +++++++....|. +.++.-.+++-+..
T Consensus 446 ~~GL~lFla~vGl~aG~~f~-~~~~~~g~~~~~~g~~~t-~~~~~~~~~~~~~~~k~~~~~~~G~-~aG~~t~~~~l~~~ 522 (558)
T PRK04972 446 EFGLMVFMAGVGLSAGSGIN-NGLGAVGGQMLIAGLIVS-LVPVVICFLFGAYVLRMNRALLFGA-IMGARTCAPAMEII 522 (558)
T ss_pred HHhHHHHHHHHHHhhhHHHH-HHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHH-HhCCCCCcHHHHHH
Confidence 34444444556665554444 44444 23344444433 33345577777 6789999988887 55655555555555
Q ss_pred HHHcCCChhHH-HHH-HHHHHHHHHHHHHHHHH
Q 017082 220 TYISKGNVALS-VLM-TTCSTIGAIVMTPLLTK 250 (377)
Q Consensus 220 t~~agGd~aLa-~~~-t~~stllav~~iPl~l~ 250 (377)
+...+.|.+.. -.. -.+++++-++..|+++.
T Consensus 523 ~~~~~~~~~~~gYa~~yp~~~il~~l~~~~iv~ 555 (558)
T PRK04972 523 SDTARSNIPALGYAGTYAIANVLLTLAGTLIVI 555 (558)
T ss_pred HhhcCCCCcccccHhHHHHHHHHHHHHHHHHHH
Confidence 66665444322 111 14566666666666554
No 75
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=68.75 E-value=1.5e+02 Score=30.66 Aligned_cols=170 Identities=18% Similarity=0.231 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHhccchhhh------hhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHH--HHHHHHH
Q 017082 116 FPVWVILGTIIGIYKPSAVTW------LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQY--LIKPMLG 187 (377)
Q Consensus 116 ~~l~vilgvllg~~~P~~~~~------l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~--vl~Pll~ 187 (377)
.|--++.|.+.++..|-.... ++..+..+.+..-+-.+|++-+++.+++.-+. ..+....+.. ++-=.++
T Consensus 36 IPepVvgG~i~ail~~~~~~~~~~~~~fd~~l~~~fmliFFttiglsa~~~~lkkgGk~--l~if~~~a~~l~~~Qn~ig 113 (404)
T COG0786 36 IPEPVVGGLIFAILLLLLHGFGGVSLNFDTSLQDVFMLIFFATIGLSASFKLLKKGGKK--LAIFLATAAGLAVLQNFIG 113 (404)
T ss_pred CCcchHHHHHHHHHHHHHHhcceEEEeCCcccccHHHHHHHHHhccccchhHHHhcChh--HHHHHHHHHHHHHHHHHHH
Confidence 677778888888777654321 22123344444444588999999999876553 2111111111 1112345
Q ss_pred HHHHHHhCCChhhhh--hhh-hcccCC-chhHHHHHHHH-cCCChhHHHHHHHHHHHHHHHH-HHHHHHHhc-----Ccc
Q 017082 188 FVIAMTLKLSAPLAT--GLI-LVSCCP-GGQASNVATYI-SKGNVALSVLMTTCSTIGAIVM-TPLLTKLLA-----GQL 256 (377)
Q Consensus 188 ~~l~~~~~l~~~l~~--Gli-Llaa~P-~~~~s~v~t~~-agGd~aLa~~~t~~stllav~~-iPl~l~ll~-----g~~ 256 (377)
..+++++++||.+.. |=+ +.+-=- .+..++.+.+. +.+-.+.+....++..+.+.+. .|+--++.. .+.
T Consensus 114 i~la~~lgidpl~gllagsIsl~GGHGtaAA~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~l~~~~ 193 (404)
T COG0786 114 IGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKNKLKPDP 193 (404)
T ss_pred HHHHHHcCccHHHHHHhcceeecCCCchHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcCCCCCC
Confidence 667778888776432 111 111111 22334455554 2233345555556666665555 777665542 110
Q ss_pred --------c-----------ccChHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 017082 257 --------V-----------PVDAAGLAISTFQVVLVPTVVGVLANEFFPK 288 (377)
Q Consensus 257 --------v-----------~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~ 288 (377)
. .+|. +.+...+.++.+-+.+|..+.++.++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~i~~-~~l~~~~~~i~i~~~vG~~i~~~l~~ 243 (404)
T COG0786 194 TKDPDDDLVDVAFEGPKSTRLITA-EPLIETLAIIAICLAVGKIINQLLKS 243 (404)
T ss_pred CCCchhhcchhhhhcccccccccH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 1222 23334455788888999988887653
No 76
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=67.34 E-value=1.1e+02 Score=28.65 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--------cccccChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHH
Q 017082 229 LSVLMTTCSTIGAIVMTPLLTKLLAG--------QLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLI 300 (377)
Q Consensus 229 La~~~t~~stllav~~iPl~l~ll~g--------~~v~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~i 300 (377)
.....+.+.++.+++.-++.-.++.. +..++++..+..-+..+=.+=..+-+++|++.|+..+.+..+.+.+
T Consensus 41 mGlavt~Vl~~s~~~~~~l~~~il~p~~~~~~~~~~~~l~~lr~~vfIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpLI 120 (202)
T PRK02830 41 LGIAVIVVLTITVPVNNLIYNYVLKPGALAWAGVPGVDLSFLGFITFIGVIAALVQILEMVLDKYFPALYNALGIFLPLI 120 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34444555555555555554434322 1233344333333222223334577889999999999998888877
Q ss_pred HH
Q 017082 301 GV 302 (377)
Q Consensus 301 s~ 302 (377)
..
T Consensus 121 ~~ 122 (202)
T PRK02830 121 TV 122 (202)
T ss_pred HH
Confidence 54
No 77
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=65.39 E-value=2e+02 Score=30.96 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhc---cch-hhhhhH-hHHHHHHHHHHHHhcccCChHHHHHHhcCChH-HHHHHHHHHHHHHHHHHHHH
Q 017082 118 VWVILGTIIGIYK---PSA-VTWLET-DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWT-VGIGFLAQYLIKPMLGFVIA 191 (377)
Q Consensus 118 l~vilgvllg~~~---P~~-~~~l~~-~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~-l~~~lv~~~vl~Pll~~~l~ 191 (377)
+.+++|+++|... +.. ...+++ ....+.+..++|-.|.+++.+++++.++.--. -..+.+++.++.=...+.+.
T Consensus 40 llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~ 119 (559)
T TIGR00840 40 LLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGIC 119 (559)
T ss_pred HHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455788887542 211 011222 34567888899999999999999988764211 11234445555544444443
Q ss_pred HHhCC-------ChhhhhhhhhcccCCchhHH
Q 017082 192 MTLKL-------SAPLATGLILVSCCPGGQAS 216 (377)
Q Consensus 192 ~~~~l-------~~~l~~GliLlaa~P~~~~s 216 (377)
...+. ...+..|-++.+.=|.++.+
T Consensus 120 ~~~~~~~~~l~~~~allfGAiiSaTDPVAVla 151 (559)
T TIGR00840 120 LIGGFGSIDIGLLDNLLFGSLISAVDPVAVLA 151 (559)
T ss_pred hhccccccCCCHHHHHHHhHHhcCCchHHHHH
Confidence 32222 22345555555555555553
No 78
>COG2855 Predicted membrane protein [Function unknown]
Probab=64.04 E-value=21 Score=35.89 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=32.9
Q ss_pred hhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhc-CCCccceeeeeeeccc
Q 017082 316 VSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGM 364 (377)
Q Consensus 316 ~~~~l~~~~~~i~~~~~ll~~~gf~lGy~l~r~-~~~~~~~rtlsi~~G~ 364 (377)
+.+++.+.+...+..........|.++|+++|+ |+|++. ++-+.+|.
T Consensus 84 tl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~--a~Lia~Gs 131 (334)
T COG2855 84 TLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKL--ALLIAAGS 131 (334)
T ss_pred eHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHccc
Confidence 455666677776766667778899999999998 887754 33333444
No 79
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=63.25 E-value=24 Score=31.92 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHhhhhhh-hhHHhhhchhHHHHHHHHHHHHHHHHHHHhh-c-CCCccceeeeeeecccccHHHHHHHH
Q 017082 298 PLIGVILTTLLCASPIGQV-SAVLKTQGAQLIFPVALLHAAAFALGYWLSK-I-SFGESTSRTISIECGMQVCICFVSIF 374 (377)
Q Consensus 298 ~~is~l~llvli~~~i~~~-~~~l~~~~~~i~~~~~ll~~~gf~lGy~l~r-~-~~~~~~~rtlsi~~G~qN~~LAl~lA 374 (377)
+.++..+.+..+....+.. .+.+++.+++.....++....+..+++.++| . |++. ......-+|.+.+.=+++-|
T Consensus 56 ~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--~~~~G~~aGa~T~tp~L~~A 133 (169)
T PF06826_consen 56 RQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNP--GIAAGILAGALTSTPALAAA 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHccccCcHHHHHH
Confidence 3344444433333333332 3455666778887788888899999999998 4 6654 45555566666655554444
No 80
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=62.49 E-value=1.5e+02 Score=28.56 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhhHHHH
Q 017082 275 PTVVGVLANEFFPKFTSKIISVTPLIGV 302 (377)
Q Consensus 275 Pl~lG~llr~~~p~~~~~i~~~~~~is~ 302 (377)
=.++-+++|++.|+..+.+..+.+.+..
T Consensus 104 Vq~vem~L~a~~p~Ly~aLGifLPLItt 131 (244)
T PRK01061 104 TQILELLLEKVSRNLYLSLGIFLPLIAV 131 (244)
T ss_pred HHHHHHHHHHHhHHHHHHHhcchhHHHH
Confidence 3456778899999998888888877754
No 81
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=61.52 E-value=1.4e+02 Score=28.00 Aligned_cols=27 Identities=15% Similarity=0.501 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhhHHHH
Q 017082 276 TVVGVLANEFFPKFTSKIISVTPLIGV 302 (377)
Q Consensus 276 l~lG~llr~~~p~~~~~i~~~~~~is~ 302 (377)
...-+++|++.|+..+.+..+.+.+..
T Consensus 93 ~~ve~~l~a~~p~Ly~~LGiflpLI~t 119 (199)
T PRK12456 93 QILEMVLERFLPSLHHTLGAFLPLLTI 119 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 456778899999998888888877654
No 82
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=60.88 E-value=26 Score=35.21 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=27.6
Q ss_pred hHHhhhchhHHHHHHHHHHHHHHHHHHHh-hc-CCCccceeeee
Q 017082 318 AVLKTQGAQLIFPVALLHAAAFALGYWLS-KI-SFGESTSRTIS 359 (377)
Q Consensus 318 ~~l~~~~~~i~~~~~ll~~~gf~lGy~l~-r~-~~~~~~~rtls 359 (377)
+++.+.++..+..........+.++|+++ |+ |+|++.+.-++
T Consensus 82 ~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia 125 (335)
T TIGR00698 82 PYIADVGPNEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLG 125 (335)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 44555666665555566677888899998 56 77776544444
No 83
>COG0679 Predicted permeases [General function prediction only]
Probab=60.72 E-value=1.7e+02 Score=28.66 Aligned_cols=251 Identities=12% Similarity=0.089 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhcc---chhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH-HH
Q 017082 118 VWVILGTIIGIYKP---SAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIA-MT 193 (377)
Q Consensus 118 l~vilgvllg~~~P---~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~-~~ 193 (377)
+.+.+|.+++...- +..+.+.+-.+.+++..+.|..-.+-+.++. .+.+.+....+...+.. +..+.+. +.
T Consensus 14 lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 88 (311)
T COG0679 14 LIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL----ADLGLIVASLVATLLAF-FLLALIGRFL 88 (311)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh----hhHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33446666666522 2223455445667777777776666665554 12233343444433332 3333333 34
Q ss_pred hCCChhhhhhhhhcccCCchhHHH-HHHHHcCCChhHHHHHHHHH-HHHHHHHHHHHHHHhcCcccccChHHHHHHHHH-
Q 017082 194 LKLSAPLATGLILVSCCPGGQASN-VATYISKGNVALSVLMTTCS-TIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQ- 270 (377)
Q Consensus 194 ~~l~~~l~~GliLlaa~P~~~~s~-v~t~~agGd~aLa~~~t~~s-tllav~~iPl~l~ll~g~~v~vd~~~i~~~Ll~- 270 (377)
++.+.....+..+.+.-|-...-. -.+...-||..++....... ......+.-.+...-.++.-+...+...++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~n 168 (311)
T COG0679 89 FKLDKRETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLKKLLTN 168 (311)
T ss_pred hccchhhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 455666666677777666655553 35666667776665554332 222333333322222222222334444444322
Q ss_pred HHHHHHHHHHHHHHH---hhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHH-HHHHHHHHHHHHh
Q 017082 271 VVLVPTVVGVLANEF---FPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVAL-LHAAAFALGYWLS 346 (377)
Q Consensus 271 vVllPl~lG~llr~~---~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~l-l~~~gf~lGy~l~ 346 (377)
=.+.-.++|.+++.. .|+..++..+.....+.-+..+......+. ................ =....-.+.+...
T Consensus 169 P~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~--~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 169 PLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAF--LKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcch--hhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 133344556666642 355443333332222222222222222222 1111111122211111 1233334444455
Q ss_pred hc-CCCccceeeeeeecccccHHHHHHHHh
Q 017082 347 KI-SFGESTSRTISIECGMQVCICFVSIFV 375 (377)
Q Consensus 347 r~-~~~~~~~rtlsi~~G~qN~~LAl~lA~ 375 (377)
+. +++..+..++.++.+|--...+..+|.
T Consensus 247 ~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~ 276 (311)
T COG0679 247 KLLGLSGLALQVLVLLSAMPTAVNAYVLAR 276 (311)
T ss_pred HHcCCChHHHHHHHHHhhCcHHhHHHHHHH
Confidence 55 566665555555555554444444443
No 84
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=57.77 E-value=1.8e+02 Score=32.98 Aligned_cols=103 Identities=15% Similarity=0.175 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcccCChHHHHHHhcCChH---HHHHHHHHHHHHHHHHHHHHHHhCCChh--hhhhhhhcccCCchhHHH
Q 017082 143 TIGLGFLMLSMGLTLTFEDFRRCLRNPWT---VGIGFLAQYLIKPMLGFVIAMTLKLSAP--LATGLILVSCCPGGQASN 217 (377)
Q Consensus 143 ~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~---l~~~lv~~~vl~Pll~~~l~~~~~l~~~--l~~GliLlaa~P~~~~s~ 217 (377)
.+.+.+-+..+|+++++..+. ++.. +....+.-++..-+.+++.++.++.+.. +.+|+++ .+-+ ....
T Consensus 325 ~lflPlFFv~vGl~idl~~l~----~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm--~~kG-~~~L 397 (832)
T PLN03159 325 GLLLPLFFAISGLKTNVTKIQ----GPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLM--NTKG-LVEM 397 (832)
T ss_pred HHHHHHHHHHhhheeeHHHhc----CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--hccc-HHHH
Confidence 456666677889999997764 2221 1111222334444556666777777655 4444443 3333 3333
Q ss_pred HHH--HHcCCCh--hHHHHHHHHHHHHHHHHHHHHHHHh
Q 017082 218 VAT--YISKGNV--ALSVLMTTCSTIGAIVMTPLLTKLL 252 (377)
Q Consensus 218 v~t--~~agGd~--aLa~~~t~~stllav~~iPl~l~ll 252 (377)
+.. ....|-. +.-..++....+.+.++.|++..++
T Consensus 398 ii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly 436 (832)
T PLN03159 398 IVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436 (832)
T ss_pred HHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 221 1122222 2222223333455667777766654
No 85
>PRK09903 putative transporter YfdV; Provisional
Probab=52.02 E-value=2.4e+02 Score=27.56 Aligned_cols=180 Identities=15% Similarity=0.097 Sum_probs=80.8
Q ss_pred HhhhHHHHHHH--HHHHHHHh--ccch-hhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHH
Q 017082 111 ILTTLFPVWVI--LGTIIGIY--KPSA-VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPM 185 (377)
Q Consensus 111 ~l~~~~~l~vi--lgvllg~~--~P~~-~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pl 185 (377)
++...+|+.++ +|.+.+.. .|+. .+.+.+-...+++..++|....+.+.++..+ +.+......+ .+++.-+
T Consensus 5 ~~~~ilpif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~ 80 (314)
T PRK09903 5 FIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFA---DTRLTLVSLV-VIVGCFF 80 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHh---hhhHHHHHHH-HHHHHHH
Confidence 34555565554 56666653 3432 3445444556677777777777766555432 2333333333 2333335
Q ss_pred HHHHHHH-HhCCChhhhhhhhhcccCCc-hhHH-HHHHHHcCCChhH-HHHHHHHHHHHHHHHHHHHHHHhcCc-c---c
Q 017082 186 LGFVIAM-TLKLSAPLATGLILVSCCPG-GQAS-NVATYISKGNVAL-SVLMTTCSTIGAIVMTPLLTKLLAGQ-L---V 257 (377)
Q Consensus 186 l~~~l~~-~~~l~~~l~~GliLlaa~P~-~~~s-~v~t~~agGd~aL-a~~~t~~stllav~~iPl~l~ll~g~-~---v 257 (377)
+++.+.+ .++.+........+.++.+- |-.. ++..... ||.+. ++...........++.|.....+... . -
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~~-G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 159 (314)
T PRK09903 81 FSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIY-GDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGK 159 (314)
T ss_pred HHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHHc-CchhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 5566554 44555433323333333332 2222 2344445 44422 22222222334555666665555321 1 1
Q ss_pred ccChHHHHHHH-HHHHHHHHHHHHHHHHH---hhHHHHHHhh
Q 017082 258 PVDAAGLAIST-FQVVLVPTVVGVLANEF---FPKFTSKIIS 295 (377)
Q Consensus 258 ~vd~~~i~~~L-l~vVllPl~lG~llr~~---~p~~~~~i~~ 295 (377)
.-...+..+++ --=.++..++|..++.. .|++.++.-+
T Consensus 160 ~~~~~~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~ 201 (314)
T PRK09903 160 KNSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFN 201 (314)
T ss_pred cchHHHHHHHHHhchHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 10112222221 11345566677766653 4555444433
No 86
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=48.92 E-value=2.3e+02 Score=26.50 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhhHHHH
Q 017082 276 TVVGVLANEFFPKFTSKIISVTPLIGV 302 (377)
Q Consensus 276 l~lG~llr~~~p~~~~~i~~~~~~is~ 302 (377)
...-+.+|++.|+..+.+..+.+.+..
T Consensus 95 ~~vem~l~a~~p~ly~~LGiflpLI~t 121 (200)
T TIGR01940 95 QILEMVLERFSPSLYNALGIFLPLITV 121 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 346778899999998888888877754
No 87
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=46.51 E-value=2.8e+02 Score=27.63 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHH
Q 017082 175 GFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTC 236 (377)
Q Consensus 175 ~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~ 236 (377)
..+..+++.-.++|.+++.++++.+....+.+....=-......++...=+|.+++....+.
T Consensus 251 ~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~ 312 (328)
T TIGR00832 251 PLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVV 312 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHh
Confidence 44566777889999999999999999998888888766655555544443444444444333
No 88
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.38 E-value=63 Score=34.13 Aligned_cols=112 Identities=20% Similarity=0.303 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hCCChhhhhhhhhccc---CCchhHHHHHHHHcCCChhHHHHHHHHHHHH
Q 017082 171 TVGIGFLAQYLIKPMLGFVIAMT-------LKLSAPLATGLILVSC---CPGGQASNVATYISKGNVALSVLMTTCSTIG 240 (377)
Q Consensus 171 ~l~~~lv~~~vl~Pll~~~l~~~-------~~l~~~l~~GliLlaa---~P~~~~s~v~t~~agGd~aLa~~~t~~stll 240 (377)
...+.++...+..-+..|+..|+ ++.++++. |+=+++| .|=-..|.+.++.-=||++.+... =|++.
T Consensus 424 fF~vTFigSIlWIA~fSYLMVWwa~~iGeT~gIp~eIM-GLTiLAAGTSIPDlitSvIVARKGlGDMAVSsSi--GSNiF 500 (588)
T KOG1307|consen 424 FFPVTFIGSILWIAAFSYLMVWWANIIGETLGIPDEIM-GLTILAAGTSIPDLITSVIVARKGLGDMAVSSSI--GSNIF 500 (588)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHcccccCCCHHHh-hhhhhhcCCchHHhhHhhhhcccccccceeeccc--ccchh
Confidence 33344444444445555555554 45566554 4433333 566677888899999998865433 23333
Q ss_pred HH---HHHHHHHHHhcCcc---cccChHHHHH--HHHHHHHHHHHHHHHHHHH
Q 017082 241 AI---VMTPLLTKLLAGQL---VPVDAAGLAI--STFQVVLVPTVVGVLANEF 285 (377)
Q Consensus 241 av---~~iPl~l~ll~g~~---v~vd~~~i~~--~Ll~vVllPl~lG~llr~~ 285 (377)
-+ +=+|.+++.+..+. ++++.-++.- .+++..++=++.|..+++|
T Consensus 501 DI~VGLplPWLL~~lI~~~~~~i~vsS~GL~csi~lLf~ml~v~v~~ia~~rW 553 (588)
T KOG1307|consen 501 DILVGLPLPWLLYTLIYGFKSKISVSSNGLVCSIGLLFAMLIVLVLGIALSRW 553 (588)
T ss_pred heeecCCcHHHHHHHHhhcCCceeecCCceehHHHHHHHHHHHHHHHHHHHhh
Confidence 22 22677777665332 6666544443 3444556667888888887
No 89
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=41.54 E-value=35 Score=31.49 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhH---HhhhchhHHHHHHHHHHHHHHHHHHHhhc-C
Q 017082 274 VPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAV---LKTQGAQLIFPVALLHAAAFALGYWLSKI-S 349 (377)
Q Consensus 274 lPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~---l~~~~~~i~~~~~ll~~~gf~lGy~l~r~-~ 349 (377)
..+++|.++-++.+...+...+. ......++++.+....+.+.+. +++.+++.+...+....-....|+..++. +
T Consensus 3 ~~li~Gi~lG~~~~~~~~~~~~~-~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~ 81 (191)
T PF03956_consen 3 IALILGILLGYFLRPPFSLIDKI-STYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLG 81 (191)
T ss_pred eeHHHHHHHHHHhcccccccccH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777776654322222222 3444555555666666666443 34455665544444444555666666666 6
Q ss_pred CCccceeeee
Q 017082 350 FGESTSRTIS 359 (377)
Q Consensus 350 ~~~~~~rtls 359 (377)
.+-+++.+++
T Consensus 82 ~~~~~~lav~ 91 (191)
T PF03956_consen 82 LSLKESLAVA 91 (191)
T ss_pred CCHHHHHHHH
Confidence 6655555444
No 90
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=41.19 E-value=48 Score=33.93 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhc-CCCccceeeeeeecccccHH
Q 017082 331 VALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQVCI 368 (377)
Q Consensus 331 ~~ll~~~gf~lGy~l~r~-~~~~~~~rtlsi~~G~qN~~ 368 (377)
+.+-...|..+||++.+. +.+.+.+.=+...|+.+|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~g 120 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSG 120 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcC
Confidence 455667899999999999 88776655555567766653
No 91
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=38.76 E-value=3e+02 Score=31.20 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcccCChHHHHH--H-hcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHH
Q 017082 144 IGLGFLMLSMGLTLTFEDFRR--C-LRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVAT 220 (377)
Q Consensus 144 ~~l~l~mf~~Gl~l~~~~l~~--~-~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t 220 (377)
++-.++++..|+.+.+.++.. . ...|+.+++++++.|+.-|..++.+..+.+.......-+++--.-|-|..|..+.
T Consensus 299 LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl 378 (810)
T TIGR00844 299 LLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAA 378 (810)
T ss_pred HHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHH
Confidence 444555667888898887742 1 1225677888888888998888865444443334556666777778888887665
Q ss_pred HHc
Q 017082 221 YIS 223 (377)
Q Consensus 221 ~~a 223 (377)
.++
T Consensus 379 ~~A 381 (810)
T TIGR00844 379 ILS 381 (810)
T ss_pred HHH
Confidence 544
No 92
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=37.46 E-value=2.4e+02 Score=24.95 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=52.0
Q ss_pred CcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcC-------------
Q 017082 102 MSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN------------- 168 (377)
Q Consensus 102 ~~~~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~------------- 168 (377)
|+.++.+.+|+.+.=-+=+++|+++|-.+-.....+....+.+.++... -+.+++++.-.++.
T Consensus 1 m~mlkeFK~Fi~rGNViDLAVgVIIG~AF~~IV~SlV~diImPlIg~l~----g~~~~~~~~~~l~~~~~~~~~~~~~~~ 76 (142)
T PRK13952 1 MSMLKEFKEFALKGNVMDLAVGVIIGGAFGKIVDSLVNDLIMPIIGLIT----GGLDFSNYFIQLGGAPAGNPTTLAAAK 76 (142)
T ss_pred CcHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCccchhheeeeccCcccchhhHHHHh
Confidence 4578888889877666677777788777666655554455566655443 12344432111110
Q ss_pred -------ChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017082 169 -------PWTVGIGFLAQYLIKPMLGFVIAMTL 194 (377)
Q Consensus 169 -------pk~l~~~lv~~~vl~Pll~~~l~~~~ 194 (377)
.....+..+++|++.-+..|.+.+..
T Consensus 77 ~a~~~~i~yG~fl~avInFlIiA~vvf~ivk~~ 109 (142)
T PRK13952 77 KAGVAVFAYGNFITVLINFLILAFIIFLMVKAI 109 (142)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234455668888877777765543
No 93
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=37.27 E-value=1.4e+02 Score=31.49 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=24.0
Q ss_pred HHHHHH-HHHHHHHHhCCChhhhhhhhhcccCCc
Q 017082 180 YLIKPM-LGFVIAMTLKLSAPLATGLILVSCCPG 212 (377)
Q Consensus 180 ~vl~Pl-l~~~l~~~~~l~~~l~~GliLlaa~P~ 212 (377)
|-.+|+ ++|-.++-|+-+|.++..+-..-+.|.
T Consensus 158 FyFLPi~v~~saak~f~~np~lg~~ig~~L~~P~ 191 (472)
T PRK09796 158 FFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPS 191 (472)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHCcc
Confidence 445676 488888889888887777666666664
No 94
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=35.17 E-value=1e+02 Score=35.53 Aligned_cols=75 Identities=27% Similarity=0.234 Sum_probs=36.4
Q ss_pred HHHhCCChhhhhhhhh-ccc-CCchhHHHHHHHHcCCChhHHHHHHHHHHHHHH---HHHHHHHHHhc--CcccccChHH
Q 017082 191 AMTLKLSAPLATGLIL-VSC-CPGGQASNVATYISKGNVALSVLMTTCSTIGAI---VMTPLLTKLLA--GQLVPVDAAG 263 (377)
Q Consensus 191 ~~~~~l~~~l~~GliL-laa-~P~~~~s~v~t~~agGd~aLa~~~t~~stllav---~~iPl~l~ll~--g~~v~vd~~~ 263 (377)
+..+++++.+..-.++ .+. .|=..++...++.-.||++. ...+-|++.-+ +-+|.++..+. .+.+.++..+
T Consensus 960 G~vlGIse~VmGlTfLA~GTSIPDlisSvivArkG~gdMAV--an~iGSNIFnIllgLGlPWlI~~li~g~~pV~V~S~G 1037 (1096)
T TIGR00927 960 GETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAV--SSSVGSNIFDITVGLPVPWLLFSLINGLQPVPVSSNG 1037 (1096)
T ss_pred hhhcCCChhhhhhhhhhhhcccHHHHHHHHHHHccCCccee--eeccccchheeeeeccHHHHHHHHhccCcceeecCcc
Confidence 4446677665333332 222 45555555666655555554 44444444332 33565555443 3455565555
Q ss_pred HHHH
Q 017082 264 LAIS 267 (377)
Q Consensus 264 i~~~ 267 (377)
+..+
T Consensus 1038 L~~s 1041 (1096)
T TIGR00927 1038 LFCA 1041 (1096)
T ss_pred HHHH
Confidence 5443
No 95
>PRK05326 potassium/proton antiporter; Reviewed
Probab=32.85 E-value=4.6e+02 Score=27.98 Aligned_cols=107 Identities=11% Similarity=0.112 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHH
Q 017082 143 TIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYI 222 (377)
Q Consensus 143 ~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~ 222 (377)
.....++++..|+.+++.++.+.. +..+.+.++.-++.-|+..++..+.++.+.... .++--+.|=|..+.+++..
T Consensus 277 ~l~~~~~Fv~lGl~~~~~~l~~~~--~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~--~~i~~~g~RG~v~i~lA~~ 352 (562)
T PRK05326 277 WLAQIGMFLVLGLLVTPSRLLDIA--LPALLLALFLILVARPLAVFLSLLPFRFNLREK--LFISWVGLRGAVPIVLATF 352 (562)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhh--heeeeecchhHHHHHHHHH
Confidence 344455666889999998886432 223333444455666777776665555443322 2221123444444443322
Q ss_pred ---cC---CCh--hHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082 223 ---SK---GNV--ALSVLMTTCSTIGAIVMTPLLTKLLA 253 (377)
Q Consensus 223 ---ag---Gd~--aLa~~~t~~stllav~~iPl~l~ll~ 253 (377)
++ ++. .....++.+|+++...++|.....+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l~ 391 (562)
T PRK05326 353 PMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARKLG 391 (562)
T ss_pred HHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHHcC
Confidence 11 121 23334566788888888888777663
No 96
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=32.47 E-value=5.5e+02 Score=26.78 Aligned_cols=136 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhhhhhH-------hHHHHHHHHHHHHhccc-CChHHHHHHhcCChHHHHHHHHH
Q 017082 108 IIEILTTLFPVWVILGTIIGIYKPSAVTWLET-------DLFTIGLGFLMLSMGLT-LTFEDFRRCLRNPWTVGIGFLAQ 179 (377)
Q Consensus 108 ~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~-------~~~~~~l~l~mf~~Gl~-l~~~~l~~~~~~pk~l~~~lv~~ 179 (377)
+.+++.-+-+.|+++-+++-...--..+.++. -...-....+|+++|.. .+++|+.+.+ ++..+...+..-
T Consensus 265 l~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~-t~~~vv~~~~~V 343 (414)
T PF03390_consen 265 LSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAF-TPQYVVIVLATV 343 (414)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHh-CHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 017082 180 YLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMT 245 (377)
Q Consensus 180 ~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~i 245 (377)
...+ +.++.+++++++.|-.+.-.-=++.+--|....+-..-+.-.++|--..+..|=+...++.
T Consensus 344 l~~~-~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~LmpFAQIstRiGGAi~l 408 (414)
T PF03390_consen 344 LGAV-IGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMPFAQISTRIGGAIML 408 (414)
T ss_pred HHHH-HHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhcccccHHHHHHhhhhHHHH
No 97
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=32.30 E-value=2.3e+02 Score=29.47 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=21.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHhccchhhhhh
Q 017082 109 IEILTTLFPVWVILGTIIGIYKPSAVTWLE 138 (377)
Q Consensus 109 ~~~l~~~~~l~vilgvllg~~~P~~~~~l~ 138 (377)
.+-+.......+++|+++|+++|+...|++
T Consensus 6 ~~~l~~~iligl~lGi~~G~~~~~~~~~l~ 35 (428)
T PRK01663 6 YKSLYFQVLVAIIIGILLGHFYPELGAQMK 35 (428)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445567888899999999987655543
No 98
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=32.00 E-value=2.3e+02 Score=29.37 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=20.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhhhh
Q 017082 107 QIIEILTTLFPVWVILGTIIGIYKPSAVTWL 137 (377)
Q Consensus 107 ~~~~~l~~~~~l~vilgvllg~~~P~~~~~l 137 (377)
|+...+.......+++|+++|.++|+..+|+
T Consensus 3 ~~~~~l~~~i~igl~lGi~~G~~~~~~~~~l 33 (421)
T PRK13027 3 KFLRSLFGQVVIALVLGVALGAFFPHFAESL 33 (421)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566777888999998887654443
No 99
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=31.82 E-value=1.4e+02 Score=21.73 Aligned_cols=38 Identities=8% Similarity=0.125 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 017082 92 GDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIY 129 (377)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~vilgvllg~~ 129 (377)
|+..-..++.-++++++.+.+.+.+...++++.++.++
T Consensus 24 G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~ 61 (64)
T smart00831 24 GPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSAL 61 (64)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333446788999988888888777766665543
No 100
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=30.36 E-value=1.7e+02 Score=25.75 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCccce
Q 017082 327 LIFPVALLHAAAFALGYWLSKI-SFGESTS 355 (377)
Q Consensus 327 i~~~~~ll~~~gf~lGy~l~r~-~~~~~~~ 355 (377)
.+...+.....++..+|++.|. +.|..++
T Consensus 79 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta 108 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPLTA 108 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3344555667788889999998 7776543
No 101
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=28.78 E-value=4.5e+02 Score=25.20 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=35.2
Q ss_pred hhhhhhhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhc-CCCccceeee
Q 017082 311 SPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTI 358 (377)
Q Consensus 311 ~~i~~~~~~l~~~~~~i~~~~~ll~~~gf~lGy~l~r~-~~~~~~~rtl 358 (377)
....++.+.++.....+...+.+=..++...+++++|+ |++++-.+++
T Consensus 77 vPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl 125 (230)
T COG1346 77 VPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSL 125 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 34567777777776666666777778889999999999 8887654444
No 102
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=27.56 E-value=6.7e+02 Score=25.56 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=25.4
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 017082 258 PVDAAGLAISTFQVVLVPTVVGVLANEFFPKF 289 (377)
Q Consensus 258 ~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~ 289 (377)
.+|...++..+.-++++-++++..++++..+.
T Consensus 162 g~~~~~il~Nl~Pvii~~~lla~GL~~~p~~m 193 (354)
T PF04346_consen 162 GFDIGMILINLIPVIIFAILLAIGLWFFPEKM 193 (354)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46777888899999999999998888775443
No 103
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=27.55 E-value=6.7e+02 Score=25.56 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=45.6
Q ss_pred hHHH-HHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHH
Q 017082 140 DLFT-IGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNV 218 (377)
Q Consensus 140 ~~~~-~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v 218 (377)
+.-. ..+.+-+...|+++|.+.+.+... ........-.+..=+..+..++.++.+...+.+.-.... +.+..+.+
T Consensus 272 ~~~~~~fiplFFi~vG~~~dl~~l~~~~~---~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~-~~ge~~~v 347 (397)
T COG0475 272 PFGDGLFIPLFFISVGMSLDLGVLLENLL---LILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLR-QGGEFAFV 347 (397)
T ss_pred hHHhHHHHHHHHHHhhHHcCHHHHhccHH---HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhh-hhhHHHHH
Confidence 3444 666677779999999998876443 222222223333334566777777755544444333332 34445555
Q ss_pred HHHHcCC
Q 017082 219 ATYISKG 225 (377)
Q Consensus 219 ~t~~agG 225 (377)
......|
T Consensus 348 ~~~~~~~ 354 (397)
T COG0475 348 LAGIALG 354 (397)
T ss_pred HHHhccc
Confidence 5555555
No 104
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=26.65 E-value=2e+02 Score=21.94 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 017082 263 GLAISTFQVVLVPTVVGVLANEFFPKFTSKIISV 296 (377)
Q Consensus 263 ~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~ 296 (377)
++..-+.+..++=+-+|.++|+++|++-+.+...
T Consensus 5 DiiQii~l~AlI~~pLGyl~~~~~~r~~~~lr~~ 38 (62)
T PF11120_consen 5 DIIQIIILCALIFFPLGYLARRWLPRIRRTLRRR 38 (62)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 4444444445555567999999999876665443
No 105
>PRK09292 Na(+)-translocating NADH-quinone reductase subunit D; Validated
Probab=26.42 E-value=5.5e+02 Score=24.17 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhHHHHHHhhhhhHHHH
Q 017082 277 VVGVLANEFFPKFTSKIISVTPLIGV 302 (377)
Q Consensus 277 ~lG~llr~~~p~~~~~i~~~~~~is~ 302 (377)
.+-++++++.|+..+.+..+.+.+.+
T Consensus 85 ~ve~~l~a~~p~Ly~~LGiflpLIvt 110 (209)
T PRK09292 85 VVDQVLKAYAYDISKQLSVFVGLIIT 110 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 56778999999999888888877754
No 106
>COG2985 Predicted permease [General function prediction only]
Probab=25.42 E-value=8.6e+02 Score=26.12 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcccCChHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHH
Q 017082 144 IGLGFLMLSMGLTLTFEDFRRCLRNP-WTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNV 218 (377)
Q Consensus 144 ~~l~l~mf~~Gl~l~~~~l~~~~~~p-k~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v 218 (377)
+.+.+-.+.+|+...++-+....++- |...++++. .+..-+++|.+.++++.|.++..|+.-=+...+......
T Consensus 63 lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli-vi~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa 137 (544)
T COG2985 63 LGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI-VIAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAA 137 (544)
T ss_pred hhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHH
Confidence 44444455778887777776666653 444555544 555556788888899999999999887666655555554
No 107
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=24.92 E-value=3e+02 Score=24.50 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=13.3
Q ss_pred CCCccceeeeeeecccccHHHHHHHH
Q 017082 349 SFGESTSRTISIECGMQVCICFVSIF 374 (377)
Q Consensus 349 ~~~~~~~rtlsi~~G~qN~~LAl~lA 374 (377)
+++. .......+|.+.+.=++.-|
T Consensus 111 ~~~~--~~~~G~~aGa~T~tpaL~aa 134 (154)
T TIGR01625 111 RINY--ALTAGMLAGATTNTPALDAA 134 (154)
T ss_pred CCCH--HHHHHHHhccccChHHHHHH
Confidence 5554 35555566666655555443
No 108
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.08 E-value=7.2e+02 Score=24.72 Aligned_cols=175 Identities=15% Similarity=0.178 Sum_probs=84.2
Q ss_pred CCcHHHHHHHHhhhHHHHHHHHHHHHHHhccch-------hhhhhHhHHHHHHHHHHHHhcccCChHHHHHHh-cCChHH
Q 017082 101 GMSQYEQIIEILTTLFPVWVILGTIIGIYKPSA-------VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCL-RNPWTV 172 (377)
Q Consensus 101 ~~~~~~~~~~~l~~~~~l~vilgvllg~~~P~~-------~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~-~~pk~l 172 (377)
.+-.||.|..+++-.-.+.+ +.+.-|+. .+ +. +...+++++..+..|--+--.-.+.-+ ++++.+
T Consensus 80 hWfkWesY~TWlSGfaLl~~-----~Yy~~a~~yLiDp~v~~-ls-~~~Ai~isl~~l~~gWlvYd~lCrsplg~~~~~l 152 (300)
T PF06181_consen 80 HWFKWESYTTWLSGFALLIV-----VYYFNAELYLIDPSVMD-LS-PWQAIAISLGSLVLGWLVYDGLCRSPLGKNDTLL 152 (300)
T ss_pred eeehhHhHHHHHHHHHHHHH-----HHHhCCceEEECCcccC-CC-HHHHHHHHHHHHHHHHHHHHHHHhccccCCCchH
Confidence 46678999877665433333 34433332 11 11 344444444444444333222222212 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChh-hhhhhhhcccCCchhHH-HHH-----------HHHcCC---ChhHHHHHHHH
Q 017082 173 GIGFLAQYLIKPMLGFVIAMTLKLSAP-LATGLILVSCCPGGQAS-NVA-----------TYISKG---NVALSVLMTTC 236 (377)
Q Consensus 173 ~~~lv~~~vl~Pll~~~l~~~~~l~~~-l~~GliLlaa~P~~~~s-~v~-----------t~~agG---d~aLa~~~t~~ 236 (377)
...+ ++++=+.+|+..++|.-... +..|.++ ++.++ ||| .....| |.+.+-..-.-
T Consensus 153 ~~~~---~v~~~~~a~~~~q~FSgRaa~i~vGa~l-----gTiM~~NV~fvI~P~Qkkvv~~~~ag~~~dp~~g~~aklr 224 (300)
T PF06181_consen 153 GVVL---FVLLVVAAWGLTQVFSGRAAFIHVGAWL-----GTIMAANVFFVIWPNQKKVVAAVKAGEEPDPAAGKRAKLR 224 (300)
T ss_pred HHHH---HHHHHHHHHHHHHHhcchHHHHHHHHHH-----HHHHHHhHheeecCCcHHHHhhhhcCCCCCchhHHHHHHH
Confidence 3222 45556778888888753322 2333322 22222 232 233333 34455444445
Q ss_pred HHHHHHHHHHHHHHHhcCcccccChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017082 237 STIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKI 293 (377)
Q Consensus 237 stllav~~iPl~l~ll~g~~v~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i 293 (377)
|.-=..+++|.++....+. -+.-+..-.-- .++.+=++.|..+|++|-...+.-
T Consensus 225 S~hN~ylTlPvLf~MiSnH-yp~~y~~~~nW--lil~li~~~g~~IRhfFn~rH~~~ 278 (300)
T PF06181_consen 225 SRHNNYLTLPVLFLMISNH-YPMTYGHPYNW--LILALIMLAGALIRHFFNLRHAGK 278 (300)
T ss_pred hhhcceeHHHHHHHHHhcc-CccccccchhH--HHHHHHHHHHHHHHHHHHHhhccC
Confidence 5555678899988776642 22222111111 123334578999999987554443
No 109
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=23.74 E-value=7.9e+02 Score=25.06 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHH---HHHHHHHHHHHHHHHHHHHhCCChh-hhhhhhhcccCCchhH
Q 017082 140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGI---GFLAQYLIKPMLGFVIAMTLKLSAP-LATGLILVSCCPGGQA 215 (377)
Q Consensus 140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~---~lv~~~vl~Pll~~~l~~~~~l~~~-l~~GliLlaa~P~~~~ 215 (377)
..+|.++.++++ +.|.+++.+.-+ |.+.. +.+...+-.+ +++.+.... +.++ ....-.+.+.-=||+.
T Consensus 59 ~~vPlai~LlLl----~~Dlr~i~~~g~--~~l~~F~~~~~g~viG~~-va~~l~~~~-l~~~~wk~ag~l~gsyiGGs~ 130 (378)
T PF05684_consen 59 YLVPLAIPLLLL----SADLRRILRLGG--RLLLAFLIGAVGTVIGAV-VAFLLFGGF-LGPEGWKIAGMLAGSYIGGSV 130 (378)
T ss_pred HHHHHHHHHHHH----HccHHHHHHhhH--HHHHHHHHHHHHHHHHHH-HHHHHHhhc-ccchHHHHHHHHHhcccCchh
Confidence 445555555554 777777766543 33222 1222222222 233332222 2344 4444445555444444
Q ss_pred HH-HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 017082 216 SN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKL 251 (377)
Q Consensus 216 s~-v~t~~agGd~aLa~~~t~~stllav~~iPl~l~l 251 (377)
.. .+.+..+-|.++-..+.+..++...+.+.+++.+
T Consensus 131 N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 131 NFVAVAEALGVSDSLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 5688888888888888999999988877776654
No 110
>PRK00567 mscL large-conductance mechanosensitive channel; Reviewed
Probab=23.57 E-value=2.5e+02 Score=24.56 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=47.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcC----------ChHHHH
Q 017082 105 YEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN----------PWTVGI 174 (377)
Q Consensus 105 ~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~----------pk~l~~ 174 (377)
++.+.+|+.+.=-+-+++|+++|-.+-.....+....+.+.++..+ | +.+++++.-..+. .....+
T Consensus 2 l~~FK~Fi~rGNVidLAVaVIIG~AF~~iV~slV~diimPlI~~~~---g-~~~~~~~~~~~~~~~~~~~~~~i~yG~fl 77 (134)
T PRK00567 2 LKEFKEFAMRGNVVDLAVGVIIGAAFGKIVSSLVDDIIMPPIGLLI---G-GVDFSNLAIVLGEAQGDAPAVVINYGVFI 77 (134)
T ss_pred cHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---C-CccccceEEEeccccccccceeeeHHHHH
Confidence 4556677765555666677777776666555444455555554442 1 2233332111111 123445
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 017082 175 GFLAQYLIKPMLGFVIAMTL 194 (377)
Q Consensus 175 ~lv~~~vl~Pll~~~l~~~~ 194 (377)
..+++|+++-++.|.+.+..
T Consensus 78 ~avI~FlIia~vvF~ivk~~ 97 (134)
T PRK00567 78 NAVIDFLIIAFAIFLLVKLI 97 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56678988888877776654
No 111
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=23.00 E-value=2.1e+02 Score=21.23 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCcHHHHHHHHhhhHHHHHHHHHHHH
Q 017082 92 GDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTII 126 (377)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~vilgvll 126 (377)
|+..-..++.-++++++.+.+.+++...++++.++
T Consensus 34 G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aail 68 (69)
T PF00690_consen 34 GPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAIL 68 (69)
T ss_dssp SSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred ccccccccccCcHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444445567899999999999888877766554
No 112
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=22.95 E-value=6.9e+02 Score=24.11 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhhhhcccC
Q 017082 181 LIKPMLGFVIAMTLKLSAPLATGLILVSCC 210 (377)
Q Consensus 181 vl~Pll~~~l~~~~~l~~~l~~GliLlaa~ 210 (377)
++.-.++|.+++.++++.+....+.+....
T Consensus 206 ~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~ 235 (286)
T TIGR00841 206 LAGFLLGYLLAKLAGLPWARCRTISIEVGM 235 (286)
T ss_pred HHHHHHHHHHHHHhCCCHhhheeeeeeeec
Confidence 344456666666677766555444444333
No 113
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=22.14 E-value=3.4e+02 Score=23.27 Aligned_cols=86 Identities=9% Similarity=0.094 Sum_probs=45.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHH
Q 017082 105 YEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKP 184 (377)
Q Consensus 105 ~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~P 184 (377)
++.+.+|+.+.=-+-+++|+++|-.+-.....+....+.+.++... - +.++++......=.....+..+++|+++-
T Consensus 2 lkeFk~Fi~rGNVidLAVaVvIG~AF~~iV~slV~diimPlI~~~~--g--~~~~~~~~~~~~i~yG~fl~avinFlIiA 77 (119)
T PRK13954 2 LKEFKEFALKGNVLDLAIAVVMGAAFNKIISSLVENIIMPLIGKIF--G--SVDFAKEWSFWGIKYGLFIQSVIDFIIIA 77 (119)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccc--C--CcccccchhhhhccHHHHHHHHHHHHHHH
Confidence 3456667665555666677777766655554444344555443332 1 22222211111111244556677888888
Q ss_pred HHHHHHHHHh
Q 017082 185 MLGFVIAMTL 194 (377)
Q Consensus 185 ll~~~l~~~~ 194 (377)
+..|.+.+..
T Consensus 78 ~vvF~~vk~~ 87 (119)
T PRK13954 78 FALFIFVKIA 87 (119)
T ss_pred HHHHHHHHHH
Confidence 8777776654
No 114
>COG3641 PfoR Predicted membrane protein, putative toxin regulator [General function prediction only]
Probab=21.64 E-value=5.1e+02 Score=26.12 Aligned_cols=85 Identities=18% Similarity=0.357 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 017082 171 TVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTK 250 (377)
Q Consensus 171 ~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ 250 (377)
.+.++.+.|+..-|.++.+++.-|+.++...+.....+-. .|-.+++..+|..+.--.--.+.+.++....=+..+
T Consensus 49 l~~vv~~~q~~m~~~IGvlva~~f~~~~l~~~s~a~aa~i----gsGav~~~~gg~~~i~giGd~in~~l~~ilAvl~~k 124 (348)
T COG3641 49 LYHVVVLIQFLMPAGIGVLVAYQFHANPLVLASVAIAAVI----GSGAVAFLNGGAFAITGIGDPINAMLAVILAVLIGK 124 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----ccchHhhhcCCeeEEeccccHHHHHHHHHHHHHHHH
Confidence 3556788899998999999999998887654433222211 222345555522222111222334444444444445
Q ss_pred HhcCcccccC
Q 017082 251 LLAGQLVPVD 260 (377)
Q Consensus 251 ll~g~~v~vd 260 (377)
.+.|+. ++|
T Consensus 125 ~l~gk~-s~d 133 (348)
T COG3641 125 VLAGKT-SFD 133 (348)
T ss_pred HhcCCc-eEE
Confidence 566654 444
No 115
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=21.62 E-value=4.7e+02 Score=22.61 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=46.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCC---hHHHHHHHHHHH
Q 017082 105 YEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNP---WTVGIGFLAQYL 181 (377)
Q Consensus 105 ~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~p---k~l~~~lv~~~v 181 (377)
++.+.+|+.+.=-+=++.|+++|-.+-.....+....+.+.++..+ | +.+++++.-..... ....+..+++|+
T Consensus 2 ~~eFk~Fi~rGNVidLAVavIiG~AF~~iV~slV~dii~PlI~~~~---g-~~~~~~~~~~~~~~~i~yG~fl~avinFl 77 (125)
T PRK13953 2 LVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVNNIIMPLVGVLL---G-GLDFSDLSWKVGKSVIQYGAFIQSIVDFL 77 (125)
T ss_pred hHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---C-CccccchhhcccccceeHHHHHHHHHHHH
Confidence 4566677765555566677777776655555444345555544332 1 23444332211110 134455667888
Q ss_pred HHHHHHHHHHHHh
Q 017082 182 IKPMLGFVIAMTL 194 (377)
Q Consensus 182 l~Pll~~~l~~~~ 194 (377)
+.-+..|.+.+..
T Consensus 78 Iia~vvF~~vk~~ 90 (125)
T PRK13953 78 IIAFAIFIFVKVL 90 (125)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777765543
No 116
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=21.57 E-value=4.7e+02 Score=28.71 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=22.5
Q ss_pred HHHHHH-HHHHHHHHhCCChhhhhhhhhcccCC
Q 017082 180 YLIKPM-LGFVIAMTLKLSAPLATGLILVSCCP 211 (377)
Q Consensus 180 ~vl~Pl-l~~~l~~~~~l~~~l~~GliLlaa~P 211 (377)
|-++|+ ++|-.++-|+-+|.++..+-..-..|
T Consensus 154 FyFLPi~ia~saAkkf~~np~lg~~ig~~L~~P 186 (627)
T PRK09824 154 FFFFPIILGYTAGKKFGGNPFTAMVIGGALVHP 186 (627)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHCh
Confidence 445676 58888888888887766666555666
No 117
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=21.43 E-value=6.8e+02 Score=29.17 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCCChhhhhhhhhcccCCch--hHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 017082 182 IKPMLGFVIAMTLKLSAPLATGLILVSCCPGG--QASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPV 259 (377)
Q Consensus 182 l~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~--~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~~v~v 259 (377)
++|.+.. ++.-+++++.++ |+.+++..-+. ..+++++ ...|+.++++..++=|++.-+.++.-...++.+..+++
T Consensus 479 FVPSLe~-IAekLgLSE~VA-GaTLLAfGTSAPELfTSLiA-v~~g~sDIGVGNIVGSnIFNILLVLGl~aLis~~~l~L 555 (1096)
T TIGR00927 479 FVPALGV-ITDKLQISEDVA-GATFMAAGGSAPELFTSLIG-VFISHSNVGIGTIVGSAVFNILFVIGTCALFSREILNL 555 (1096)
T ss_pred hHHHHHH-HHHHhCCcHhhh-heeeeeeecCcHHHHHHHHH-HHcCCCcceehhhHhHHHHHHHHHHhhheeeccccccc
Confidence 3444433 334456666554 44444332222 2233333 23456666666666666665555555554555444555
Q ss_pred ChHHHHHHHHHH
Q 017082 260 DAAGLAISTFQV 271 (377)
Q Consensus 260 d~~~i~~~Ll~v 271 (377)
|.+.+...+.++
T Consensus 556 d~~~L~RDllFy 567 (1096)
T TIGR00927 556 TWWPLFRDVSFY 567 (1096)
T ss_pred cccceehhHHHH
Confidence 554454554433
No 118
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=21.23 E-value=6.6e+02 Score=23.24 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhhHHHHHH
Q 017082 276 TVVGVLANEFFPKFTSKIISVTPLIGVIL 304 (377)
Q Consensus 276 l~lG~llr~~~p~~~~~i~~~~~~is~l~ 304 (377)
...-+.++++.|+..+.+..+.+.+..=+
T Consensus 85 ~~ve~~l~~~~p~ly~~LGiflpLI~tNC 113 (190)
T TIGR01943 85 QFVEMVVRKTSPDLYRALGIFLPLITTNC 113 (190)
T ss_pred HHHHHHHHHhChHHHHHHhhhhhHHHHHH
Confidence 35677789999999888888887775433
Done!