Query 017082
Match_columns 377
No_of_seqs 220 out of 1650
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 100.0 1.3E-46 4.4E-51 370.6 27.1 276 100-376 4-280 (332)
2 2oar_A Large-conductance mecha 41.9 49 0.0017 29.0 6.1 87 101-192 21-115 (174)
3 3zux_A Transporter, ASBTNM; tr 37.8 2.6E+02 0.009 26.3 13.9 35 172-206 230-264 (332)
4 1zcd_A Na(+)/H(+) antiporter 1 29.0 4.1E+02 0.014 25.9 12.8 105 140-247 62-173 (388)
5 2nwl_A GLTPH, glutamate sympor 18.6 4.8E+02 0.017 25.5 9.5 80 113-195 13-108 (422)
6 2kv5_A FST, putative uncharact 17.4 81 0.0028 20.0 2.2 17 268-284 4-20 (33)
7 1vf5_F Protein PET M; photosyn 7.9 4.7E+02 0.016 16.7 4.0 22 327-348 8-29 (35)
8 3aa1_C 23MER peptide from plec 5.8 2.7E+02 0.0094 16.4 1.5 12 25-36 9-20 (26)
9 1q90_M Cytochrome B6F complex 4.4 5.8E+02 0.02 16.7 2.5 22 327-348 9-30 (39)
10 3pcv_A Leukotriene C4 synthase 3.8 1.6E+03 0.056 18.4 9.9 84 101-192 45-128 (156)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=100.00 E-value=1.3e-46 Score=370.61 Aligned_cols=276 Identities=31% Similarity=0.567 Sum_probs=260.0
Q ss_pred CCCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHH
Q 017082 100 GGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQ 179 (377)
Q Consensus 100 ~~~~~~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~ 179 (377)
++|+.++|+.+++.+++++|+++++++|+++|+.+.+++ +.++++++++||.+|++++.+|+++.++|||.+..++++|
T Consensus 4 ~~m~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~-~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~ 82 (332)
T 3zux_A 4 ASMNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAG-PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQ 82 (332)
T ss_dssp ---CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGG-GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhH-HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHH
Confidence 458999999999999999999999999999999999887 7888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 017082 180 YLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPV 259 (377)
Q Consensus 180 ~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~~v~v 259 (377)
++++|+++|++++.++++++++.|+++++||||+++|++||+++|||+++++.++.+||+++++++|+++.++.|+.+++
T Consensus 83 ~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v 162 (332)
T 3zux_A 83 FAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEI 162 (332)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHH
Q 017082 260 DAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAF 339 (377)
Q Consensus 260 d~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf 339 (377)
|+.+++.+++.++++|+++|+++|+++|++.+++++.++.++...+++++...++.+.+.+.+.+..++..+++++.++|
T Consensus 163 ~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 242 (332)
T 3zux_A 163 QAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGY 242 (332)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899988887777777777888888777778888889999999
Q ss_pred HHHHHHhhc-CCCccceeeeeeecccccHHHHHHHHhc
Q 017082 340 ALGYWLSKI-SFGESTSRTISIECGMQVCICFVSIFVN 376 (377)
Q Consensus 340 ~lGy~l~r~-~~~~~~~rtlsi~~G~qN~~LAl~lA~~ 376 (377)
.+||+++|+ |+++++++|+++|+|+||+++|+++|..
T Consensus 243 ~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~ 280 (332)
T 3zux_A 243 LLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAA 280 (332)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHH
Confidence 999999999 9999999999999999999999999863
No 2
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=41.89 E-value=49 Score=29.00 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=51.7
Q ss_pred CCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhc---C----ChHHH
Q 017082 101 GMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLR---N----PWTVG 173 (377)
Q Consensus 101 ~~~~~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~---~----pk~l~ 173 (377)
.+++++.+.+|+.+.=-+=+++|+++|-.+-.....+....+.+.++ ++ | +.+++++.-.++ . .....
T Consensus 21 ~~~mlkeFKeFi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIg--l~--G-g~dfs~l~~~l~~~~~~~~i~yG~F 95 (174)
T 2oar_A 21 DKHMLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLIN--RI--G-VNAQSDVGILRIGIGGGQTIDLNVL 95 (174)
T ss_dssp ---CHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--C-CCCEEECCCCTTTCCSCEEECHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--hh--C-CCCcccceEEEecCCCceeeeHHHH
Confidence 46789999999976666667778888877766665554466666666 22 3 345554422221 0 12345
Q ss_pred HHHHHHHHHHHHHH-HHHHH
Q 017082 174 IGFLAQYLIKPMLG-FVIAM 192 (377)
Q Consensus 174 ~~lv~~~vl~Pll~-~~l~~ 192 (377)
+..+++|+++-++. |++.+
T Consensus 96 i~avInFlIIA~vIYFliVk 115 (174)
T 2oar_A 96 LSAAINFFLIAFAVYFLVVL 115 (174)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667888877776 44443
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=37.81 E-value=2.6e+02 Score=26.28 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhh
Q 017082 172 VGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLIL 206 (377)
Q Consensus 172 l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliL 206 (377)
+....+....+.-.++|.+++.++.+.+....+.+
T Consensus 230 v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~ 264 (332)
T 3zux_A 230 IFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTI 264 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhh
Confidence 34444445556667788888888887776655555
No 4
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=28.98 E-value=4.1e+02 Score=25.85 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHhcccCChHHHHHHhcCChH--HHHHHHHHHHHHHHHHHHHHHHhCCC-hhhhhhhhhcccCCchhHH
Q 017082 140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWT--VGIGFLAQYLIKPMLGFVIAMTLKLS-APLATGLILVSCCPGGQAS 216 (377)
Q Consensus 140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~--l~~~lv~~~vl~Pll~~~l~~~~~l~-~~l~~GliLlaa~P~~~~s 216 (377)
+.....+.+.||..|++++.|.+...++++|. .-.....-=++.|.+.|. .++.+ ++...|-.+..+.-.+-+.
T Consensus 62 windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~---~~~~~~~~~~~gw~ip~ATdIAfal 138 (388)
T 1zcd_A 62 WINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL---AFNYADPITREGWAIPAATDIAFAL 138 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG---GGCCSSTTHHHHTSSSSCCCHHHHH
T ss_pred HHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH---HHhcCChhhhhhhHHHHHHHHHHHH
Confidence 34467888889999999999877444444433 122222233567887753 34432 2233444444444444444
Q ss_pred HHHHHHcCCChh----HHHHHHHHHHHHHHHHHHH
Q 017082 217 NVATYISKGNVA----LSVLMTTCSTIGAIVMTPL 247 (377)
Q Consensus 217 ~v~t~~agGd~a----La~~~t~~stllav~~iPl 247 (377)
.++..+.+.... ..+...++.-+.+++.+-+
T Consensus 139 ~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAv 173 (388)
T 1zcd_A 139 GVLALLGSRVPLALKIFLMALAIIDDLGAIIIIAL 173 (388)
T ss_dssp HHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333322 3334444555555554433
No 5
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=18.60 E-value=4.8e+02 Score=25.50 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHhccc-----h-hhhhh----------HhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHH
Q 017082 113 TTLFPVWVILGTIIGIYKPS-----A-VTWLE----------TDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGF 176 (377)
Q Consensus 113 ~~~~~l~vilgvllg~~~P~-----~-~~~l~----------~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~l 176 (377)
.......+++|+++|+.+|+ . ..|++ +..+.+.++..+...=.+++.++..+... |.+.+..
T Consensus 13 ~~~ili~lvlGi~~G~~~~~~~~~~~~~~~~~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~--~ti~~~~ 90 (422)
T 2nwl_A 13 LIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGV--KIVVYYL 90 (422)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHH--HHHHHHH
Confidence 44567788899999999884 1 12333 13444555555544334455555555443 2333322
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 017082 177 LAQYLIKPMLGFVIAMTLK 195 (377)
Q Consensus 177 v~~~vl~Pll~~~l~~~~~ 195 (377)
+ ...+--.+++.++.+++
T Consensus 91 ~-tt~iA~~igl~~~~~~~ 108 (422)
T 2nwl_A 91 L-TSAFAVTLGIIMARLFN 108 (422)
T ss_dssp H-HHHHHHHHHHHHHHHSC
T ss_pred H-HHHHHHHHHHHHHHHhC
Confidence 2 33344455666666654
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=17.35 E-value=81 Score=20.04 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017082 268 TFQVVLVPTVVGVLANE 284 (377)
Q Consensus 268 Ll~vVllPl~lG~llr~ 284 (377)
++..++.|+++|+.++-
T Consensus 4 i~~~IIaPivVGvvl~L 20 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEM 20 (33)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45578999999998874
No 7
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=7.86 E-value=4.7e+02 Score=16.69 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 017082 327 LIFPVALLHAAAFALGYWLSKI 348 (377)
Q Consensus 327 i~~~~~ll~~~gf~lGy~l~r~ 348 (377)
+......+.++|..+|+.+-|.
T Consensus 8 ~A~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 8 AALLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhee
Confidence 3444566778899999999987
No 8
>3aa1_C 23MER peptide from pleckstrin homology domain-CON family O member 1; actin capping protein, barbed END regulation; HET: MES; 1.90A {Homo sapiens}
Probab=5.78 E-value=2.7e+02 Score=16.39 Aligned_cols=12 Identities=0% Similarity=-0.269 Sum_probs=7.0
Q ss_pred cCCCCccccccc
Q 017082 25 PTGSSILVGVAQ 36 (377)
Q Consensus 25 ~~~~~~~~~~~~ 36 (377)
-+...|+.||++
T Consensus 9 drakip~~rr~p 20 (26)
T 3aa1_C 9 DRAKIQHSRRPP 20 (26)
T ss_dssp SSCCCCSCCCCC
T ss_pred hhhcCcccccCC
Confidence 345566777653
No 9
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=4.43 E-value=5.8e+02 Score=16.68 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 017082 327 LIFPVALLHAAAFALGYWLSKI 348 (377)
Q Consensus 327 i~~~~~ll~~~gf~lGy~l~r~ 348 (377)
+......+.++|..+|+.+-|.
T Consensus 9 ~A~i~~~L~LvGla~Gf~LLki 30 (39)
T 1q90_M 9 TALTMVGMTLVGLAIGFVLLRV 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3445566778899999999987
No 10
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=3.78 E-value=1.6e+03 Score=18.39 Aligned_cols=84 Identities=11% Similarity=0.038 Sum_probs=42.3
Q ss_pred CCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHH
Q 017082 101 GMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQY 180 (377)
Q Consensus 101 ~~~~~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~ 180 (377)
+.++..|-..+...++|.++++..+.++..|+..... -.....++=+++..|...+ . ..|......+...++
T Consensus 45 ~f~Ra~RAH~N~lE~~P~fl~ll~l~~l~~~~~~a~~--lg~~~~~gRily~~gY~~~-~-----~~R~~G~~~t~~~~~ 116 (156)
T 3pcv_A 45 EFERVYRAQVNCSEYFPLFLATLWVAGIFFHEGAAAL--CGLVYLFARLRYFQGYARS-A-----QLRLAPLYASARALW 116 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHHHHHHHHHHHHC-G-----GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHHHHHhcC-C-----CccHHHHHHHHHHHH
Confidence 4455555555555678888888888887775532211 1123334444555555432 1 112223444455555
Q ss_pred HHHHHHHHHHHH
Q 017082 181 LIKPMLGFVIAM 192 (377)
Q Consensus 181 vl~Pll~~~l~~ 192 (377)
++.=+.++++..
T Consensus 117 ~L~~~~~~Gi~~ 128 (156)
T 3pcv_A 117 LLVALAALGLLA 128 (156)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555444555543
Done!