Query 017082
Match_columns 377
No_of_seqs 220 out of 1650
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 08:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017082.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017082hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 9.9 82 0.006 22.9 2.8 25 114-138 5-29 (158)
2 d2e74d2 f.23.12.1 (D:12-45) IS 4.2 3.4E+02 0.025 15.5 2.7 21 113-133 8-28 (34)
3 d1jvaa2 d.95.2.2 (A:464-581) V 3.9 2.8E+02 0.02 20.5 2.8 30 335-369 26-55 (118)
4 d1ppjc2 f.21.1.2 (C:15-260) Mi 3.5 9.6E+02 0.07 19.2 6.5 80 99-178 10-105 (246)
5 d1mpza_ g.20.1.1 (A:) Obtustat 3.2 2.6E+02 0.019 16.9 1.6 19 11-30 8-26 (41)
6 d1q90r_ f.23.12.1 (R:) ISP sub 3.1 3.2E+02 0.024 16.3 1.9 20 113-132 13-32 (39)
7 d1wpga4 f.33.1.1 (A:1-124,A:24 2.9 6.4E+02 0.047 22.0 5.1 37 91-127 36-72 (472)
8 d2yvxa3 f.57.1.1 (A:276-448) M 2.3 1.2E+03 0.086 17.6 6.3 22 156-179 71-92 (173)
9 d1jb0i_ f.23.17.1 (I:) Subunit 2.0 4.1E+02 0.03 15.6 1.4 12 179-190 11-22 (38)
10 d1ryia2 d.16.1.3 (A:219-306) G 1.7 6E+02 0.044 16.3 2.1 14 76-89 31-44 (88)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=9.86 E-value=82 Score=22.87 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHhccchhhhhh
Q 017082 114 TLFPVWVILGTIIGIYKPSAVTWLE 138 (377)
Q Consensus 114 ~~~~l~vilgvllg~~~P~~~~~l~ 138 (377)
..+-+..++|++.++.+|....+.+
T Consensus 5 ELlVViaIIgILaaia~P~~~~~~~ 29 (158)
T d2pila_ 5 ELMIVIAIVGILAAVALPAYQDYTA 29 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777899999999999876654
No 2
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.18 E-value=3.4e+02 Score=15.45 Aligned_cols=21 Identities=19% Similarity=0.350 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHhccch
Q 017082 113 TTLFPVWVILGTIIGIYKPSA 133 (377)
Q Consensus 113 ~~~~~l~vilgvllg~~~P~~ 133 (377)
-|.+.+.-+.|+.+|.++|..
T Consensus 8 mnlltfgt~tg~alg~lypvv 28 (34)
T d2e74d2 8 MNLLAFGTVTGVALGALYPLV 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhhhhhHH
Confidence 355677778899999888864
No 3
>d1jvaa2 d.95.2.2 (A:464-581) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.88 E-value=2.8e+02 Score=20.54 Aligned_cols=30 Identities=13% Similarity=0.390 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhcCCCccceeeeeeecccccHHH
Q 017082 335 HAAAFALGYWLSKISFGESTSRTISIECGMQVCIC 369 (377)
Q Consensus 335 ~~~gf~lGy~l~r~~~~~~~~rtlsi~~G~qN~~L 369 (377)
...+|++|+|+|- |..+ ...|.+..+...+
T Consensus 26 ~~~aYlLGlWlGD-G~s~----~~~it~~s~D~el 55 (118)
T d1jvaa2 26 KVLAYLLGLWIGD-GLSD----RATFSVDSRDTSL 55 (118)
T ss_dssp HHHHHHHHHHHHH-BCTT----SSEEEEESSCHHH
T ss_pred hhhhhhhheeecC-CccC----CceeeccCccHHH
Confidence 3567889999885 2322 3334455555544
No 4
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.49 E-value=9.6e+02 Score=19.24 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=45.4
Q ss_pred CCCCcHHHHHHHHhhhHHHHHHHHHHHHHHhc-cchhh---------------hhhHhHHHHHHHHHHHHhcccCChHHH
Q 017082 99 PGGMSQYEQIIEILTTLFPVWVILGTIIGIYK-PSAVT---------------WLETDLFTIGLGFLMLSMGLTLTFEDF 162 (377)
Q Consensus 99 ~~~~~~~~~~~~~l~~~~~l~vilgvllg~~~-P~~~~---------------~l~~~~~~~~l~l~mf~~Gl~l~~~~l 162 (377)
|+.++.+=.++..+...+.+-++-|+.++.++ |+... |+-+..-..+--++++.+.+.+-..-+
T Consensus 10 p~nl~~~w~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~ 89 (246)
T d1ppjc2 10 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 89 (246)
T ss_dssp ETTCCGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHH
Confidence 34556554556555666777777899999875 54322 211122233444445555556655666
Q ss_pred HHHhcCChHHHHHHHH
Q 017082 163 RRCLRNPWTVGIGFLA 178 (377)
Q Consensus 163 ~~~~~~pk~l~~~lv~ 178 (377)
....|+||....|.+.
T Consensus 90 ~~sy~~~~~w~~G~~l 105 (246)
T d1ppjc2 90 YGSYTFLETWNIGVIL 105 (246)
T ss_dssp HTGGGSHHHHHHHHHH
T ss_pred hcCccchHHHHHHHHH
Confidence 6667777765555543
No 5
>d1mpza_ g.20.1.1 (A:) Obtustatin {Blunt-nosed viper (Vipera lebetina obtusa) [TaxId: 209528]}
Probab=3.18 E-value=2.6e+02 Score=16.89 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=14.6
Q ss_pred cccccccccccccccCCCCc
Q 017082 11 KNCTNLHASEASFRPTGSSI 30 (377)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (377)
++|+ +++...+.||+.++|
T Consensus 8 ~~Ck-f~~~G~~CR~~cDl~ 26 (41)
T d1mpza_ 8 RQCK-LKPAGTTCWKTSLTS 26 (41)
T ss_dssp TTTB-CSSSCCTTCCCSSSC
T ss_pred CCCe-EcCCCCeeCcccCCC
Confidence 4677 888888888877665
No 6
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.06 E-value=3.2e+02 Score=16.32 Aligned_cols=20 Identities=10% Similarity=-0.277 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHhccc
Q 017082 113 TTLFPVWVILGTIIGIYKPS 132 (377)
Q Consensus 113 ~~~~~l~vilgvllg~~~P~ 132 (377)
-|.+.+.-+.+...|...|.
T Consensus 13 MNLll~G~~~~~~~g~l~py 32 (39)
T d1q90r_ 13 MNLILAGGAGLPITTLALGY 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhhhhccce
Confidence 34455555666666665554
No 7
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.93 E-value=6.4e+02 Score=22.04 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCcHHHHHHHHhhhHHHHHHHHHHHHH
Q 017082 91 SGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIG 127 (377)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~vilgvllg 127 (377)
.|+..-..++.-++|+.+.+.+.+.+...+.++.++.
T Consensus 36 ~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls 72 (472)
T d1wpga4 36 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACIS 72 (472)
T ss_dssp SCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3555544455678999999888887776655444333
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=2.31 E-value=1.2e+03 Score=17.58 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=13.8
Q ss_pred cCChHHHHHHhcCChHHHHHHHHH
Q 017082 156 TLTFEDFRRCLRNPWTVGIGFLAQ 179 (377)
Q Consensus 156 ~l~~~~l~~~~~~pk~l~~~lv~~ 179 (377)
+++.+|.++.++ |....+++.-
T Consensus 71 ~i~~~~~~~~l~--kE~~vgll~G 92 (173)
T d2yvxa3 71 DLDLRDWRRVFL--KEMGVGLLLG 92 (173)
T ss_dssp CSCSSSHHHHHH--HHHHHHHHHH
T ss_pred cccchhHHHHHH--HHHHHHHHHH
Confidence 567777777765 4566665543
No 9
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=2.03 E-value=4.1e+02 Score=15.57 Aligned_cols=12 Identities=8% Similarity=0.625 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q 017082 179 QYLIKPMLGFVI 190 (377)
Q Consensus 179 ~~vl~Pll~~~l 190 (377)
-+++.|+++|+.
T Consensus 11 PwI~iPvv~wl~ 22 (38)
T d1jb0i_ 11 PWIFIPVVCWLM 22 (38)
T ss_dssp HHHHHHHHHTHH
T ss_pred chhHHHHHHHHH
Confidence 355667666654
No 10
>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}
Probab=1.66 E-value=6e+02 Score=16.33 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=9.6
Q ss_pred cCCCCceeeecccc
Q 017082 76 NSRCSQVLCKAAAN 89 (377)
Q Consensus 76 ~~~~~~~~~~~~~~ 89 (377)
+..+..+.+.+...
T Consensus 31 p~~~g~~~iG~T~e 44 (88)
T d1ryia2 31 PRKSGRLVVGATMK 44 (88)
T ss_dssp ECTTSEEEEECCCE
T ss_pred ECCCCCEEEccEEE
Confidence 45566788887764
Done!