BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017084
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 166/274 (60%), Positives = 214/274 (78%), Gaps = 2/274 (0%)
Query: 86 EVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIR 145
+++E A+ PE DW+ +RR IH+NPEL ++E ETS+L+R+EL+ + I Y+YP+A TG+
Sbjct: 16 KLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAITGVI 75
Query: 146 AWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSR 205
++GTG PPFVALRADMDALPIQE VEWE+KSK+AGKMHACGHD HV ML+GAAKIL
Sbjct: 76 GYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKILHEH 135
Query: 206 EHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 265
H L+GTV+LIFQPAEE +GAK+M +GAL++VEAIF +H+S P G SR G LA
Sbjct: 136 RHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLA 195
Query: 266 GCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG 325
G G F AVI+GK G AA P ++DPV+AAS+ V+SLQ LVSRE +PLDS+VV+V+ NGG
Sbjct: 196 GAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVNGG 255
Query: 326 DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEV 359
+ ++IPD++ IGGTLRAF T F QL QR++EV
Sbjct: 256 NAFNVIPDSITIGGTLRAF--TGFTQLQQRVKEV 287
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 146/247 (59%), Gaps = 2/247 (0%)
Query: 100 LKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWV-GTGGPPFVA 157
L + RR +H++PEL+FQE ET++ +R L+ +I P KTG+ A + G P +A
Sbjct: 34 LINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIA 93
Query: 158 LRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIF 217
+RAD+DALPIQE + SKV G HACGHD H A +IG A +L R LKGTV IF
Sbjct: 94 IRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIF 153
Query: 218 QPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGK 277
QPAEE GA++++ G L V AIF H + P G IG + GPL A F VI GK
Sbjct: 154 QPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPVGTIGVKEGPLXASVDRFEIVIKGK 213
Query: 278 KGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVI 337
G A+ P+ S+DP+ AA + LQ +VSR + L + VVS+T G ++IPD
Sbjct: 214 GGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEX 273
Query: 338 GGTLRAF 344
GT+R F
Sbjct: 274 EGTVRTF 280
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 167 bits (424), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 141/248 (56%), Gaps = 2/248 (0%)
Query: 103 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGP-PFVALRAD 161
+RR +HQ+PEL+F E ET++ + ++ + + GI+ + +G P +A+RAD
Sbjct: 19 IRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGIKVTIDSGKPGKTLAIRAD 78
Query: 162 MDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAE 221
DALPI E + S+ G MHACGHDAH A ++ A+ L + G V++I QPAE
Sbjct: 79 FDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLAEMKDSFTGKVVVIHQPAE 138
Query: 222 EAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGG 280
E GAK M+ +G L+ V+ + VHV TG + RPG + G FF + GK G
Sbjct: 139 EVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRPGYVQTGRAFFKLKVQGKGGH 198
Query: 281 AANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGT 340
++PH + D ++A S V +LQ +VSR +P ++ VV++ F+G ++I D V I G
Sbjct: 199 GSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTIGSFDGKGQFNVIKDVVEIEGD 258
Query: 341 LRAFSNTS 348
+R ++ +
Sbjct: 259 VRGLTDAT 266
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 143 GIRAWVGTGGP-PFVALRADMDALPIQEAVEWEYK-------SKVAGKMHACGHDAHVAM 194
G+ A + TG P P +A R D DAL + E + ++ S AG HACGHD H A+
Sbjct: 98 GVVATLDTGRPGPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTAI 157
Query: 195 LIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTG 254
+G A +LK L G + LIFQPAEE GA+ +A G ++DV+ A+H+ P G
Sbjct: 158 GLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPAG 217
Query: 255 VI 256
+
Sbjct: 218 TV 219
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 116/288 (40%), Gaps = 48/288 (16%)
Query: 91 ARRPETVDWLKS-------VRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA--K 141
+ + +D++++ + IH+ PEL +E SR L L + + +A
Sbjct: 2 GEKQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHA 61
Query: 142 TGIRAWVGTG-GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAK 200
TG A +G P + A+ DALP G HACGH+ +IG A
Sbjct: 62 TGFIATYDSGLDGPAIGFLAEYDALP--------------GLGHACGHN-----IIGTAS 102
Query: 201 I-----LKSREHLLKGTVILIFQPAEEAG-NGAKR--MMADGALEDVEAIFAVHVSHEHP 252
+ LK + G V+++ PAEE G NG+ + + G ++ ++ +H +E
Sbjct: 103 VLGAIGLKQVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGVIDQIDIALXIHPGNE-T 161
Query: 253 TGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVIS-LQGLVSREANP 311
I + +L F+ G +A+ + D L A A IS G+ +
Sbjct: 162 YKTIDTLAVDVLD-VKFY--------GKSAHASENADEALNALDAXISYFNGVAQLRQHI 212
Query: 312 LDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEV 359
Q V +GG ++IPD RA + L +++ ++
Sbjct: 213 KKDQRVHGVILDGGKAANIIPDYTHARFYTRAXTRKELDILTEKVNQI 260
>pdb|2PCS|A Chain A, Crystal Structure Of Conserved Protein From Geobacillus
Kaustophilus
Length = 162
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 149 GTGGPPFVALRADMDALPIQE---AVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKS 204
G GGP FV +D PI + + + Y ++V GK+ A G ML G AK+L S
Sbjct: 82 GEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQ----RMLGGVAKLLIS 136
>pdb|3LKZ|A Chain A, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
pdb|3LKZ|B Chain B, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
Length = 321
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 39 DINSLGSSTTAATTPALKPDGGSVKNRSSTSRKPYSS 75
D+N LGS T A P L D +KNR R+ YSS
Sbjct: 278 DVN-LGSGTRAVGKPLLNSDTSKIKNRIERLRREYSS 313
>pdb|2Q2E|A Chain A, Crystal Structure Of The Topoisomerase Vi Holoenzyme From
Methanosarcina Mazei
Length = 369
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 63 KNRSSTSRKPYSSCEVWSRACSKEVMELARRPETVDWLKSVRRT-IHQNPE 112
+NR ST R+ Y E W A KE E R E ++ L S++R H PE
Sbjct: 95 RNRGSTLRELYYISEGWDYAKFKEQGESDRLIEDLEILTSLQREYFHMRPE 145
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 193 AMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEH 251
A+++ K+LK GT+ ++F EE G+ G++ ++ + EA A +V
Sbjct: 125 AVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQE------EAKLADYVLSFE 178
Query: 252 PTGVIGSRPGPLLAGCGFFHAVISGKKGGA-ANPHRSVDPVLAASAAVISLQGLVSREAN 310
PT + +G + I+GK A A P V+ ++ AS V+ + + N
Sbjct: 179 PTSAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDKAKN 238
Query: 311 PLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEE 358
+ T G+ ++IP + + +R N F ++ +EE
Sbjct: 239 LR----FNWTIAKAGNVSNIIPASATLNADVRYARNEDFDAAMKTLEE 282
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 273 VISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREAN----PLDSQVVSVTYFNGGD-H 327
+ GK+G A PH +++PV + A++ L V E N P Q+ ++ NGG
Sbjct: 190 TVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNI---NGGTGA 246
Query: 328 LDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEV 359
++IP + + R + ++ L QR+ +
Sbjct: 247 TNVIPGELNVKFNFRFSTESTEAGLKQRVHAI 278
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 144 IRAWVGTGGPPFVALRADMDALPIQEAVEW-EYKSKVAGKMHACGHDAHVAM 194
+ A+VGT V +D+DA +++A++W K +G+ G + H M
Sbjct: 903 LTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEM 954
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 144 IRAWVGTGGPPFVALRADMDALPIQEAVEW-EYKSKVAGKMHACGHDAHVAM 194
+ A+VGT V +D+DA +++A++W K +G+ G + H M
Sbjct: 903 LTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEM 954
>pdb|3CHV|A Chain A, Crystal Structure Of A Prokaryotic Domain Of Unknown
Function (Duf849) Member (Spoa0042) From Silicibacter
Pomeroyi Dss-3 At 1.45 A Resolution
Length = 284
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 94 PETVDWLKSVRRTIHQNPELAFQEFETSRLLRA 126
P+ VDWL + R+ PE+ + F+ S +LRA
Sbjct: 128 PDLVDWLAAQXRSYRVTPEI--EAFDLSHILRA 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,809,427
Number of Sequences: 62578
Number of extensions: 434014
Number of successful extensions: 922
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 16
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)