Query 017084
Match_columns 377
No_of_seqs 161 out of 1746
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:28:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02280 IAA-amino acid hydrol 100.0 6.2E-52 1.3E-56 419.4 38.2 306 60-365 57-364 (478)
2 COG1473 AbgB Metal-dependent a 100.0 4.8E-49 1E-53 385.7 30.9 274 95-368 9-285 (392)
3 PLN02693 IAA-amino acid hydrol 100.0 1.3E-47 2.8E-52 385.1 34.9 269 95-365 44-312 (437)
4 TIGR01891 amidohydrolases amid 100.0 1.7E-43 3.6E-48 348.1 31.7 265 101-365 2-268 (363)
5 PRK06915 acetylornithine deace 100.0 9.4E-42 2E-46 342.0 32.1 272 82-365 3-312 (422)
6 PRK08588 succinyl-diaminopimel 100.0 2.2E-41 4.7E-46 334.5 31.0 259 98-365 2-274 (377)
7 PRK13013 succinyl-diaminopimel 100.0 1.2E-39 2.6E-44 327.1 31.2 269 86-365 4-319 (427)
8 PRK06837 acetylornithine deace 100.0 4.9E-39 1.1E-43 322.9 31.9 274 80-365 4-317 (427)
9 TIGR01910 DapE-ArgE acetylorni 100.0 2.4E-39 5.1E-44 319.8 27.9 257 102-365 2-283 (375)
10 PRK13004 peptidase; Reviewed 100.0 9.6E-39 2.1E-43 318.1 31.9 266 84-361 3-280 (399)
11 PRK06133 glutamate carboxypept 100.0 1.4E-38 3E-43 318.0 32.3 263 85-362 26-302 (410)
12 PRK07338 hypothetical protein; 100.0 2.6E-38 5.6E-43 315.2 32.1 264 85-364 6-297 (402)
13 TIGR03526 selenium_YgeY putati 100.0 3.4E-38 7.4E-43 313.8 31.5 265 86-362 3-279 (395)
14 PRK08596 acetylornithine deace 100.0 3.4E-38 7.4E-43 316.3 31.1 266 87-365 4-303 (421)
15 PRK13983 diaminopimelate amino 100.0 2.6E-38 5.7E-43 314.4 30.0 266 95-365 2-301 (400)
16 PRK13009 succinyl-diaminopimel 100.0 3.3E-38 7.2E-43 311.3 30.0 261 99-363 3-278 (375)
17 TIGR01246 dapE_proteo succinyl 100.0 2.6E-38 5.6E-43 311.8 29.2 257 101-362 2-274 (370)
18 PRK05111 acetylornithine deace 100.0 3.5E-38 7.5E-43 312.2 30.1 255 98-365 5-286 (383)
19 PRK07522 acetylornithine deace 100.0 3.4E-38 7.3E-43 312.4 28.8 254 98-362 4-280 (385)
20 TIGR03320 ygeY M20/DapE family 100.0 7.2E-38 1.6E-42 311.4 31.1 265 86-362 3-279 (395)
21 TIGR01892 AcOrn-deacetyl acety 100.0 8.8E-38 1.9E-42 306.9 29.4 251 102-364 1-272 (364)
22 TIGR01880 Ac-peptdase-euk N-ac 100.0 9.2E-38 2E-42 311.1 29.9 263 97-363 8-296 (400)
23 TIGR01900 dapE-gram_pos succin 100.0 3.2E-37 6.9E-42 304.6 28.0 250 103-360 1-277 (373)
24 PRK13007 succinyl-diaminopimel 100.0 7.1E-37 1.5E-41 299.4 29.8 251 96-364 5-267 (352)
25 PRK08651 succinyl-diaminopimel 100.0 1.6E-36 3.4E-41 301.4 30.0 261 94-366 2-292 (394)
26 PRK06446 hypothetical protein; 100.0 9.1E-37 2E-41 307.3 28.1 261 98-363 2-331 (436)
27 PRK08201 hypothetical protein; 100.0 1.9E-36 4.2E-41 306.6 30.1 273 85-363 3-350 (456)
28 PRK09133 hypothetical protein; 100.0 1.4E-36 3E-41 308.8 29.2 262 95-362 34-366 (472)
29 PRK07907 hypothetical protein; 100.0 1.1E-35 2.5E-40 300.4 31.4 271 85-363 7-342 (449)
30 PRK07473 carboxypeptidase; Pro 100.0 2.4E-35 5.3E-40 291.4 31.7 254 94-361 7-275 (376)
31 PRK08652 acetylornithine deace 100.0 4.7E-35 1E-39 285.7 28.4 243 98-363 2-250 (347)
32 PRK08262 hypothetical protein; 100.0 1.5E-35 3.2E-40 302.4 25.9 262 95-363 41-380 (486)
33 PRK09104 hypothetical protein; 100.0 5.5E-35 1.2E-39 296.6 29.9 272 85-362 6-357 (464)
34 PRK08737 acetylornithine deace 100.0 7.1E-35 1.5E-39 286.8 29.0 244 95-362 3-267 (364)
35 TIGR01883 PepT-like peptidase 100.0 8.8E-35 1.9E-39 285.6 27.8 248 100-365 2-266 (361)
36 PRK00466 acetyl-lysine deacety 100.0 1.3E-34 2.7E-39 283.3 28.2 238 95-362 7-249 (346)
37 PRK07906 hypothetical protein; 100.0 8.1E-35 1.8E-39 292.2 27.2 255 101-361 2-322 (426)
38 PRK04443 acetyl-lysine deacety 100.0 6.5E-34 1.4E-38 278.5 27.5 243 97-362 5-254 (348)
39 PRK07079 hypothetical protein; 100.0 2.7E-33 5.8E-38 284.6 31.4 272 82-363 5-353 (469)
40 COG0624 ArgE Acetylornithine d 100.0 2.4E-33 5.2E-38 280.1 29.4 267 94-365 9-307 (409)
41 PRK07205 hypothetical protein; 100.0 2.7E-33 5.9E-38 282.7 29.0 262 94-362 7-346 (444)
42 TIGR01886 dipeptidase dipeptid 100.0 6.7E-33 1.5E-37 281.2 30.0 262 87-362 4-369 (466)
43 PRK13381 peptidase T; Provisio 100.0 6E-33 1.3E-37 276.9 28.3 251 99-365 2-302 (404)
44 PRK05469 peptidase T; Provisio 100.0 1.1E-32 2.3E-37 275.4 28.5 253 98-366 2-305 (408)
45 PRK07318 dipeptidase PepV; Rev 100.0 2.5E-32 5.3E-37 277.3 28.7 262 87-362 5-369 (466)
46 KOG2275 Aminoacylase ACY1 and 100.0 4.1E-32 8.8E-37 259.8 26.2 264 97-364 24-315 (420)
47 PRK15026 aminoacyl-histidine d 100.0 1.4E-31 3.1E-36 271.7 28.8 252 97-368 9-295 (485)
48 TIGR01902 dapE-lys-deAc N-acet 100.0 2.3E-31 5.1E-36 259.1 27.4 231 103-358 2-236 (336)
49 KOG2276 Metalloexopeptidases [ 100.0 1.3E-31 2.8E-36 254.0 24.2 278 84-369 4-371 (473)
50 PRK12892 allantoate amidohydro 100.0 4.3E-31 9.2E-36 264.1 27.6 248 97-365 9-313 (412)
51 TIGR01882 peptidase-T peptidas 100.0 4.4E-31 9.6E-36 263.9 25.6 253 98-365 3-306 (410)
52 PRK12893 allantoate amidohydro 100.0 2.5E-30 5.4E-35 258.6 29.4 247 97-365 9-312 (412)
53 TIGR01887 dipeptidaselike dipe 100.0 2.9E-30 6.3E-35 260.3 29.1 255 98-361 2-355 (447)
54 PRK06156 hypothetical protein; 100.0 3E-30 6.5E-35 265.1 28.3 259 94-363 42-415 (520)
55 TIGR01893 aa-his-dipept aminoa 100.0 5.3E-30 1.1E-34 260.9 28.8 251 97-364 3-285 (477)
56 PRK09290 allantoate amidohydro 100.0 1.2E-29 2.5E-34 254.0 27.7 246 97-365 6-313 (413)
57 PRK12890 allantoate amidohydro 100.0 1.6E-28 3.4E-33 245.9 30.1 245 98-366 9-315 (414)
58 PRK12891 allantoate amidohydro 100.0 4.6E-28 1E-32 242.5 30.2 246 99-365 11-312 (414)
59 TIGR01879 hydantase amidase, h 100.0 3.3E-27 7.1E-32 235.4 28.2 233 112-365 25-305 (401)
60 PRK08554 peptidase; Reviewed 100.0 1.2E-26 2.6E-31 233.6 26.2 257 99-362 2-338 (438)
61 PRK13799 unknown domain/N-carb 99.9 4E-25 8.6E-30 229.8 29.8 249 94-365 177-491 (591)
62 TIGR03176 AllC allantoate amid 99.9 4.2E-25 9E-30 220.5 28.8 248 98-366 3-307 (406)
63 PRK13590 putative bifunctional 99.9 5.4E-25 1.2E-29 228.9 29.3 248 94-366 177-490 (591)
64 PF07687 M20_dimer: Peptidase 99.6 1.7E-15 3.6E-20 123.5 11.6 100 266-365 5-109 (111)
65 COG4187 RocB Arginine degradat 99.6 4.8E-15 1E-19 142.9 15.1 261 97-365 7-327 (553)
66 PF01546 Peptidase_M20: Peptid 99.5 3.5E-14 7.7E-19 126.2 8.1 76 157-234 1-85 (189)
67 PRK10199 alkaline phosphatase 99.5 3.6E-13 7.8E-18 130.0 14.7 129 100-233 37-188 (346)
68 COG2195 PepD Di- and tripeptid 99.5 4.6E-13 9.9E-18 132.3 12.3 254 97-364 4-310 (414)
69 TIGR03106 trio_M42_hydro hydro 99.4 1.1E-11 2.3E-16 120.9 16.5 129 98-227 3-223 (343)
70 PRK09961 exoaminopeptidase; Pr 99.1 2E-09 4.3E-14 105.2 16.6 142 101-248 3-223 (344)
71 COG1363 FrvX Cellulase M and r 99.0 8.4E-09 1.8E-13 100.1 15.1 146 98-249 2-238 (355)
72 TIGR03107 glu_aminopep glutamy 98.9 2E-08 4.3E-13 98.2 15.1 142 102-249 2-236 (350)
73 PRK09864 putative peptidase; P 98.9 3.3E-08 7.2E-13 96.6 15.2 140 101-249 3-231 (356)
74 PF04389 Peptidase_M28: Peptid 98.0 8.2E-06 1.8E-10 72.0 5.8 82 155-247 2-89 (179)
75 KOG2194 Aminopeptidases of the 98.0 3.4E-05 7.3E-10 81.6 10.4 132 100-246 59-224 (834)
76 KOG3946 Glutaminyl cyclase [Po 96.2 0.084 1.8E-06 49.5 11.6 135 88-233 41-200 (338)
77 COG2234 Iap Predicted aminopep 95.7 0.037 7.9E-07 55.8 8.2 63 153-234 208-274 (435)
78 KOG2195 Transferrin receptor a 95.4 0.048 1E-06 58.0 7.8 76 142-233 339-420 (702)
79 PF05343 Peptidase_M42: M42 gl 94.9 0.09 1.9E-06 50.4 7.5 65 179-248 124-191 (292)
80 PF05450 Nicastrin: Nicastrin; 93.4 0.45 9.7E-06 44.1 8.7 66 154-232 1-73 (234)
81 KOG2526 Predicted aminopeptida 92.9 0.91 2E-05 45.1 10.1 113 122-247 165-305 (555)
82 PRK00913 multifunctional amino 89.0 5.2 0.00011 41.1 11.7 126 96-225 169-312 (483)
83 PF00883 Peptidase_M17: Cytoso 88.3 4.5 9.7E-05 39.0 10.2 111 101-223 1-141 (311)
84 cd00433 Peptidase_M17 Cytosol 87.5 10 0.00023 38.8 12.9 128 96-225 152-298 (468)
85 PTZ00412 leucyl aminopeptidase 85.3 12 0.00026 38.9 11.8 126 96-224 210-356 (569)
86 PRK05015 aminopeptidase B; Pro 84.6 15 0.00032 37.0 11.8 125 97-225 99-249 (424)
87 TIGR01893 aa-his-dipept aminoa 76.5 5.2 0.00011 41.0 5.9 43 314-362 337-379 (477)
88 KOG2597 Predicted aminopeptida 75.0 45 0.00098 34.3 11.8 130 95-226 186-334 (513)
89 COG0260 PepB Leucyl aminopepti 71.0 61 0.0013 33.4 11.8 127 96-225 165-311 (485)
90 PF05343 Peptidase_M42: M42 gl 65.4 5.6 0.00012 38.1 3.0 25 142-166 1-26 (292)
91 PF06675 DUF1177: Protein of u 50.4 1.3E+02 0.0028 28.1 8.9 89 152-250 30-133 (276)
92 COG4882 Predicted aminopeptida 48.7 38 0.00083 33.4 5.5 71 142-233 179-259 (486)
93 PRK02256 putative aminopeptida 41.9 42 0.0009 34.4 4.9 42 180-225 251-294 (462)
94 PRK02813 putative aminopeptida 29.2 73 0.0016 32.3 4.3 47 180-229 225-275 (428)
95 PRK02256 putative aminopeptida 26.3 2.4E+02 0.0052 28.9 7.5 52 115-166 39-106 (462)
96 PRK15026 aminoacyl-histidine d 25.0 1.6E+02 0.0036 30.2 6.1 43 315-363 344-386 (485)
97 PRK02813 putative aminopeptida 24.7 2.5E+02 0.0054 28.5 7.2 52 115-166 19-89 (428)
98 PF01221 Dynein_light: Dynein 24.0 1.1E+02 0.0023 23.5 3.5 35 94-131 15-49 (89)
99 PTZ00371 aspartyl aminopeptida 23.3 1.4E+02 0.003 30.6 5.1 46 180-225 242-290 (465)
100 KOG3566 Glycosylphosphatidylin 22.2 3.7E+02 0.0081 28.3 7.8 90 122-233 92-193 (617)
101 PF04114 Gaa1: Gaa1-like, GPI 21.0 2.6E+02 0.0057 29.0 6.6 73 140-233 2-77 (504)
102 PF01320 Colicin_Pyocin: Colic 20.9 2.8E+02 0.0062 21.4 5.2 42 93-134 29-81 (85)
No 1
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=6.2e-52 Score=419.42 Aligned_cols=306 Identities=78% Similarity=1.220 Sum_probs=272.4
Q ss_pred CCcccCCCCCCC-CC-ccccccchHhHHHHHHhccCcchHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEe
Q 017084 60 GSVKNRSSTSRK-PY-SSCEVWSRACSKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKY 137 (377)
Q Consensus 60 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~ 137 (377)
.+.+||+.+... +. ..|.+|.+.+++.++-...+++..+.+++++++++++||++++|.+++++|.++|+++|+++++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~~ 136 (478)
T PLN02280 57 SPKKNQSSGLPAKPSSDECEVWTKACSEAVLRLAYQPDTVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYRY 136 (478)
T ss_pred CCcccccCCCCCCCCCchhhHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEEe
Confidence 344455554333 44 6699999999998887765577889999999999999999999999999999999999999887
Q ss_pred ecCCceEEEEecCCCCCeEEEecCcCcccCCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEE
Q 017084 138 PLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIF 217 (377)
Q Consensus 138 ~~~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif 217 (377)
...++|+++++|++++|+|+|+|||||||+++.++|+|+|.++|++|||||+++++++++++++|++.+.+++++|.|+|
T Consensus 137 ~~~~~~vva~~g~~~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if 216 (478)
T PLN02280 137 PLAKTGIRAWIGTGGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLF 216 (478)
T ss_pred cCCCCEEEEEECCCCCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEe
Confidence 66788999999654458999999999999988888999999999999999999999999999999987778899999999
Q ss_pred ecCCCCcCcHHHHHHcCCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHH
Q 017084 218 QPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAA 297 (377)
Q Consensus 218 ~~dEE~g~Ga~~li~~g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~ 297 (377)
++|||+|.|++.|+++|.++++|+++++|+.+.+|.+.++.+.+...+|..+++|+++|+++|++.|+.|+|||..|+++
T Consensus 217 ~pdEE~g~Ga~~li~~g~~~~~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~l 296 (478)
T PLN02280 217 QPAEEAGNGAKRMIGDGALDDVEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAA 296 (478)
T ss_pred cccccccchHHHHHHCCCCcCCCEEEEEecCCCCCCceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHH
Confidence 99999988999999999998899999999977778787777777777899999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 298 VISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 298 i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
+..++.+..+...+....+++++.++||.+.|+||++|++++++|+.+.++.+++.++|+++++..+.
T Consensus 297 i~~l~~l~~r~~~~~~~~tvnvg~I~GG~~~NvIPd~~~l~~diR~~~~e~~e~l~~~I~~~~~~~a~ 364 (478)
T PLN02280 297 VISLQGIVSREANPLDSQVVSVTTMDGGNNLDMIPDTVVLGGTFRAFSNTSFYQLLKRIQEVIVEQAG 364 (478)
T ss_pred HHHHHHHHhcccCCCCCcEEEEEEEEccCCCCEeCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999886554455566789999999999999999999999999999999999999999999988653
No 2
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=4.8e-49 Score=385.73 Aligned_cols=274 Identities=43% Similarity=0.650 Sum_probs=257.4
Q ss_pred chHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecC-CceEEEEecCC-CCCeEEEecCcCcccCCCCCC
Q 017084 95 ETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA-KTGIRAWVGTG-GPPFVALRADMDALPIQEAVE 172 (377)
Q Consensus 95 ~~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~-~~~lia~~g~~-~~~~I~l~aH~DvVP~~~~~~ 172 (377)
..++++++++|+||++||++++|++++++++++|+++|+++....+ ++++++.++++ ++|+|+|++.||.+|..+.++
T Consensus 9 ~~~~~l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g~~~~~~~~~~TGvva~~~~g~~g~tIalRAD~DALPi~E~t~ 88 (392)
T COG1473 9 ELKDELIEWRRDLHEHPELGFEEYRTAAYIAEKLEELGFEVVEVGGGKTGVVATLKGGKPGPTIALRADMDALPIQEETG 88 (392)
T ss_pred hhhHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHcCCeeEeccCCceEEEEEEcCCCCCCEEEEEeecccCccccccC
Confidence 4588999999999999999999999999999999999999544444 69999999654 567999999999999999999
Q ss_pred CCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcCcHHHHHHcCCCCC-ccEEEEEecCCCC
Q 017084 173 WEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED-VEAIFAVHVSHEH 251 (377)
Q Consensus 173 w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~Ga~~li~~g~~~~-~d~~i~~~~~~~~ 251 (377)
+||.+..+|+||+||||++++++|+++++|+++..+++++|+|+|+|.||.++|++.|+++|.+++ +|+++.+|+.++.
T Consensus 89 ~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~Ga~~mi~~G~~~~~vD~v~g~H~~p~~ 168 (392)
T COG1473 89 LPFASKNPGVMHACGHDGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGGGAKAMIEDGVFDDFVDAVFGLHPGPGL 168 (392)
T ss_pred CCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccccHHHHHhcCCccccccEEEEecCCCCC
Confidence 999999999999999999999999999999988778999999999999999989999999999999 9999999998766
Q ss_pred CcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeCccccee
Q 017084 252 PTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMI 331 (377)
Q Consensus 252 p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~NvI 331 (377)
|.|.+.++.|..+++...++|+++|+++|++.|+.++||+.+++.++..||.+..+..+|.++.+++++.++||.+.|+|
T Consensus 169 ~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~~~vv~vg~~~aG~a~NVI 248 (392)
T COG1473 169 PVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLDSAVVTVGKIEAGTAANVI 248 (392)
T ss_pred CCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCccCeEEEEEEecCCCcCCcC
Confidence 89999999999889999999999999999999999999999999999999999998888888899999999999999999
Q ss_pred cCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhhcCc
Q 017084 332 PDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFFLNE 368 (377)
Q Consensus 332 P~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~~~~ 368 (377)
|+++++++++|+...+..+.+.++|+++++++|.+..
T Consensus 249 pd~A~l~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~g 285 (392)
T COG1473 249 PDSAELEGTIRTFSDEVREKLEARIERIAKGIAAAYG 285 (392)
T ss_pred CCeeEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999977553
No 3
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=1.3e-47 Score=385.13 Aligned_cols=269 Identities=61% Similarity=0.996 Sum_probs=242.1
Q ss_pred chHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCCCCCeEEEecCcCcccCCCCCCCC
Q 017084 95 ETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWE 174 (377)
Q Consensus 95 ~~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~ 174 (377)
+..+++++++++||++||+|++|.+++++|.++|+++|++++....++|+++.++++++|+|+|+|||||||+++.++|+
T Consensus 44 ~~~~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~~~~~~~~via~~g~~~g~~i~l~~h~DaVp~~e~~~~~ 123 (437)
T PLN02693 44 EVFDWMVRIRRKIHENPELGYEEFETSKLIRSELDLIGIKYRYPVAITGIIGYIGTGEPPFVALRADMDALPIQEAVEWE 123 (437)
T ss_pred hhHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeEecCCCcEEEEEECCCCCCEEEEEeecCCCcCCCCCCCC
Confidence 45688999999999999999999999999999999999998764567899999965556899999999999998888899
Q ss_pred cccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcCcHHHHHHcCCCCCccEEEEEecCCCCCcc
Q 017084 175 YKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTG 254 (377)
Q Consensus 175 ~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~Ga~~li~~g~~~~~d~~i~~~~~~~~p~g 254 (377)
|+|..+|++|||||+++++++++|++.|++.+..++++|.|+|++|||.++|++.|++.|.+++.|+++..|..+..+.|
T Consensus 124 ~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~~~Ga~~~i~~g~~~~~~~iig~h~~p~~~~g 203 (437)
T PLN02693 124 HKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSPRTPFG 203 (437)
T ss_pred CCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccchhhHHHHHHCCCCCCCCEEEEEecCCCCCCe
Confidence 99998999999999999999999999999887778899999999999965699999999988778899988887666778
Q ss_pred eeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeCcccceecCc
Q 017084 255 VIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDA 334 (377)
Q Consensus 255 ~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~ 334 (377)
.+..+.|...+|..+++|+++|+++|++.|+.|+|||..++++|.+|+++..+...+..+.++++|.++||.+.|+||++
T Consensus 204 ~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~~~~~ti~vg~i~GG~~~NvVPd~ 283 (437)
T PLN02693 204 KAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVNGGNAFNVIPDS 283 (437)
T ss_pred eEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCCCCCcEEEEEEEEcCCCCceECCe
Confidence 77777777778889999999999999999999999999999999999998655555566789999999999999999999
Q ss_pred EEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 335 VVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 335 ~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
|++++++|+.+.. +.+.++|+++++.++.
T Consensus 284 a~~~~diR~~~~~--~~i~~~i~~i~~~~a~ 312 (437)
T PLN02693 284 ITIGGTLRAFTGF--TQLQQRIKEIITKQAA 312 (437)
T ss_pred EEEEEEEecCCHH--HHHHHHHHHHHHHHHH
Confidence 9999999999874 5899999999988644
No 4
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=100.00 E-value=1.7e-43 Score=348.07 Aligned_cols=265 Identities=44% Similarity=0.708 Sum_probs=230.3
Q ss_pred HHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEe-ecCCceEEEEecCC-CCCeEEEecCcCcccCCCCCCCCcccc
Q 017084 101 KSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKY-PLAKTGIRAWVGTG-GPPFVALRADMDALPIQEAVEWEYKSK 178 (377)
Q Consensus 101 i~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~-~~~~~~lia~~g~~-~~~~I~l~aH~DvVP~~~~~~w~~~p~ 178 (377)
++++++|++|||+|++|.++++||+++|+++|+++++ .....|++++++++ ++|+|+|+||+||||+++...+||.+.
T Consensus 2 ~~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~~~~~~~~~~vva~~~~~~~~~~i~l~gH~DtVp~~~~~~~pf~~~ 81 (363)
T TIGR01891 2 TDIRRHLHEHPELSFEEFKTSSLIAEALESLGIEVRRGVGGATGVVATIGGGKPGPVVALRADMDALPIQEQTDLPYKST 81 (363)
T ss_pred hHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEecCCCCcEEEEEEeCCCCCCEEEEEeccCCCCcccccCCCcccC
Confidence 5789999999999999999999999999999999986 34568899999654 468999999999999876666788877
Q ss_pred cCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcCcHHHHHHcCCCCCccEEEEEecCCCCCcceeEe
Q 017084 179 VAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGS 258 (377)
Q Consensus 179 ~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~Ga~~li~~g~~~~~d~~i~~~~~~~~p~g~i~~ 258 (377)
++|++||||++++++++++++..|++.+..++++|.|+|++|||.+.|++.+++.+.+++.|++++.|+.+..+.+.+.+
T Consensus 82 ~~g~l~g~G~~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~e~~~~~~~~~~~~ 161 (363)
T TIGR01891 82 NPGVMHACGHDLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGGGGATKMIEDGVLDDVDAILGLHPDPSIPAGTVGL 161 (363)
T ss_pred CCCceecCcCHHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCcchHHHHHHCCCCCCcCEEEEECCCCCCCCeEEEE
Confidence 78999999999888999999999988767788999999999999978999999988877789999999876666666555
Q ss_pred eccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeCcccceecCcEEEE
Q 017084 259 RPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIG 338 (377)
Q Consensus 259 ~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~ 338 (377)
..+....|..+++|+++|+++|++.|+.|.||+..|++++.+++++...........+++++.++||.+.|+||++|++.
T Consensus 162 ~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~i~gG~~~nvvP~~~~~~ 241 (363)
T TIGR01891 162 RPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPSRPAVVTVGIIEAGGAPNVIPDKASMS 241 (363)
T ss_pred CCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEEcCCCCcEECCeeEEE
Confidence 55555567789999999999999999999999999999999998864332233334678999999999999999999999
Q ss_pred EEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 339 GTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 339 ~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
+++|+.+.++.+++.++|++.++.++.
T Consensus 242 ~diR~~~~~~~e~~~~~i~~~~~~~~~ 268 (363)
T TIGR01891 242 GTVRSLDPEVRDQIIDRIERIVEGAAA 268 (363)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988754
No 5
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=9.4e-42 Score=342.04 Aligned_cols=272 Identities=17% Similarity=0.233 Sum_probs=227.5
Q ss_pred HhHHHHHHhccCcchHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEee--------------------cCC
Q 017084 82 ACSKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP--------------------LAK 141 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~--------------------~~~ 141 (377)
..++++.+++ ++.++++++++++|++|||+|++|.+++++|+++|+++|++++.. .++
T Consensus 3 ~~~~~~~~~~--~~~~~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (422)
T PRK06915 3 QLKKQICDYI--ESHEEEAVKLLKRLIQEKSVSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDS 80 (422)
T ss_pred HHHHHHHHHH--HhhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCC
Confidence 3467788888 788899999999999999999999999999999999999998632 146
Q ss_pred ceEEEEecC-CCCCeEEEecCcCcccCCCCCCCCc---cc-ccCCeEeeCCc-h--HHHHHHHHHHHHHHhcCCCCCceE
Q 017084 142 TGIRAWVGT-GGPPFVALRADMDALPIQEAVEWEY---KS-KVAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTV 213 (377)
Q Consensus 142 ~~lia~~g~-~~~~~I~l~aH~DvVP~~~~~~w~~---~p-~~~G~l~GrG~-~--g~~a~~l~a~~~L~~~~~~l~~~I 213 (377)
+|+++++++ +++|+|+|+|||||||+++.+.|++ .+ .++|++||||+ | +++++++.|+++|++.+..++++|
T Consensus 81 ~nlia~~~g~~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v 160 (422)
T PRK06915 81 PNIVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDV 160 (422)
T ss_pred ceEEEEEcCCCCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcE
Confidence 899999954 3468999999999999988788854 44 36899999999 4 677778889999998887889999
Q ss_pred EEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHH
Q 017084 214 ILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVL 292 (377)
Q Consensus 214 ~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~ 292 (377)
.|+|++|||.|+ |+..++..++ ..|++++.+|+.. .+ ..+ ..|..+++|+++|+++|+|.|+.|.|||.
T Consensus 161 ~~~~~~dEE~g~~G~~~~~~~~~--~~d~~i~~ep~~~----~i--~~~--~~G~~~~~i~v~G~~~H~s~p~~g~nAi~ 230 (422)
T PRK06915 161 IFQSVIEEESGGAGTLAAILRGY--KADGAIIPEPTNM----KF--FPK--QQGSMWFRLHVKGKAAHGGTRYEGVSAIE 230 (422)
T ss_pred EEEEecccccCCcchHHHHhcCc--CCCEEEECCCCCc----cc--eee--cccEEEEEEEEEeeccccCCCCcCcCHHH
Confidence 999999999886 9888888764 5799987655321 11 122 23788999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcc----ccCCC-----CCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhh
Q 017084 293 AASAAVISLQGLVSR----EANPL-----DSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFF 363 (377)
Q Consensus 293 ~~~~~i~~l~~~~~~----~~~~~-----~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~ 363 (377)
.+++++..|+.+... ...+. .+.+++++.|+||.+.|+||+.|++.+++|+.|.++.+++.++|++.+++.
T Consensus 231 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~~~ 310 (422)
T PRK06915 231 KSMFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIEGGSWPSSVPDSVILEGRCGIAPNETIEAAKEEFENWIAEL 310 (422)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEeeCCCCCCccCcEEEEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999876431 11111 135789999999999999999999999999999999999999999999877
Q ss_pred hh
Q 017084 364 FF 365 (377)
Q Consensus 364 a~ 365 (377)
+.
T Consensus 311 ~~ 312 (422)
T PRK06915 311 ND 312 (422)
T ss_pred hc
Confidence 54
No 6
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=2.2e-41 Score=334.49 Aligned_cols=259 Identities=22% Similarity=0.294 Sum_probs=221.5
Q ss_pred HHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEee---cCCceEEEEecCCCCCeEEEecCcCcccCCCCCCCC
Q 017084 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP---LAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWE 174 (377)
Q Consensus 98 ~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~---~~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~ 174 (377)
++.++++++|++|||+|++|.+++++|.++|+++|++++.. .++.|+++.+|++ +|+|+|+||+||||+++.+.|.
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~g~~-~~~il~~~H~DtVp~~~~~~w~ 80 (377)
T PRK08588 2 EEKIQILADIVKINSVNDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEIGSG-SPVLALSGHMDVVAAGDVDKWT 80 (377)
T ss_pred hHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEeCCC-CceEEEEeeecccCCCCcccCc
Confidence 46789999999999999999999999999999999998753 3467999999654 4899999999999997777886
Q ss_pred ccc----ccCCeEeeCCc-h--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEe
Q 017084 175 YKS----KVAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVH 246 (377)
Q Consensus 175 ~~p----~~~G~l~GrG~-~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~ 246 (377)
++| .++|++||||+ | +++++++.|++.|++.+..++++|.|+|++|||.|+ |++.+++.|+++++|++++.+
T Consensus 81 ~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~G~~~~~~~~~~~~~d~~i~~e 160 (377)
T PRK08588 81 YDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGELGAKQLTEKGYADDLDALIIGE 160 (377)
T ss_pred CCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCchhHHHHHhcCccCCCCEEEEec
Confidence 655 46899999999 4 778888999999998888889999999999999886 999999998887889988876
Q ss_pred cCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccc---cCCCCCcEEEEEEEe
Q 017084 247 VSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE---ANPLDSQVVSVTYFN 323 (377)
Q Consensus 247 ~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~---~~~~~~~~~~v~~i~ 323 (377)
|.. ..+. .+. .|..+++|+++|+++|++.|+.|.|||..+++++..++++..+. ....+..+++++.++
T Consensus 161 p~~----~~i~--~~~--~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~t~~v~~i~ 232 (377)
T PRK08588 161 PSG----HGIV--YAH--KGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDSIKKHNPYLGGLTHVVTIIN 232 (377)
T ss_pred CCC----ceeE--EEE--EEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhhhcccCccCCCCceeeeEEe
Confidence 532 1121 122 27788999999999999999999999999999999998764321 123345789999999
Q ss_pred eCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 324 GGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 324 gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
||...|+||++|++++++|+.+.++.+++.++|++++++.+.
T Consensus 233 gG~~~nvip~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~ 274 (377)
T PRK08588 233 GGEQVNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQ 274 (377)
T ss_pred CCCcCCcCCCeEEEEEEeccCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987653
No 7
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.2e-39 Score=327.15 Aligned_cols=269 Identities=15% Similarity=0.156 Sum_probs=219.5
Q ss_pred HHHHhccCcchHHHHHHHHHHhHcCCCCC--c-chHHHHHHHHHHHHhCCCcEEeecC-----------CceEEEEecC-
Q 017084 86 EVMELARRPETVDWLKSVRRTIHQNPELA--F-QEFETSRLLRAELDRMEIGYKYPLA-----------KTGIRAWVGT- 150 (377)
Q Consensus 86 ~~~~~~~~~~~~~~li~~~~~lv~iPs~s--~-~E~~~~~~l~~~L~~lG~~v~~~~~-----------~~~lia~~g~- 150 (377)
.+.+++ ++.++++++++++|++|||++ + +|.++++||+++|+++|++++.... +.|+++++++
T Consensus 4 ~~~~~~--~~~~~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~ 81 (427)
T PRK13013 4 RLFAAI--EARRDDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGA 81 (427)
T ss_pred HHHHHH--HHhHHHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCC
Confidence 456667 677899999999999999987 3 5689999999999999999875321 4699999944
Q ss_pred CCCCeEEEecCcCcccCCCCCCCC---ccc-ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCC
Q 017084 151 GGPPFVALRADMDALPIQEAVEWE---YKS-KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEA 223 (377)
Q Consensus 151 ~~~~~I~l~aH~DvVP~~~~~~w~---~~p-~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~ 223 (377)
+++|+|+|+||+||||+++ .|. |.+ .++|++||||+. +++++++.|++.|++.+..++++|.|+|++|||.
T Consensus 82 ~~~~~i~l~gH~DvVp~~~--~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~ 159 (427)
T PRK13013 82 RDGDCVHFNSHHDVVEVGH--GWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEES 159 (427)
T ss_pred CCCCEEEEEeccccCCCCC--CCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEecccc
Confidence 3468999999999999863 464 554 468999999994 8999999999999988878899999999999998
Q ss_pred cC--cHHHHHHcCCCC--CccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHH
Q 017084 224 GN--GAKRMMADGALE--DVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVI 299 (377)
Q Consensus 224 g~--Ga~~li~~g~~~--~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~ 299 (377)
|+ |...+++.|.++ ++|++++.+|+.. ..+. .+. .|..+++|+++|+++|++.|+.|+|||..|+++|.
T Consensus 160 g~~~g~~~l~~~~~~~~~~~d~~i~~ep~~~---~~i~--~~~--~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~ 232 (427)
T PRK13013 160 GGFGGVAYLAEQGRFSPDRVQHVIIPEPLNK---DRIC--LGH--RGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLA 232 (427)
T ss_pred CChhHHHHHHhcCCccccCCCEEEEecCCCC---CceE--Eee--eeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHH
Confidence 74 788888888765 5689888775421 1122 222 27789999999999999999999999999999999
Q ss_pred HHHhhhcc-----cc-CC-----CCCcEEEEEEEeeCccc----------ceecCcEEEEEEEecCChhhHHHHHHHHHH
Q 017084 300 SLQGLVSR-----EA-NP-----LDSQVVSVTYFNGGDHL----------DMIPDAVVIGGTLRAFSNTSFYQLLQRIEE 358 (377)
Q Consensus 300 ~l~~~~~~-----~~-~~-----~~~~~~~v~~i~gG~~~----------NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~ 358 (377)
+|++...+ .. .+ ....+++++.|+||... |+||++|++.+++|+.+.++.+++.++|++
T Consensus 233 ~l~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~~~~~~~~~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~~ 312 (427)
T PRK13013 233 EIEERLFPLLATRRTAMPVVPEGARQSTLNINSIHGGEPEQDPDYTGLPAPCVADRCRIVIDRRFLIEEDLDEVKAEITA 312 (427)
T ss_pred HHHHHhhhhhhcccccCCCCCcccCCCceeeeEEeCCCccccccccccccccCCceEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 99764211 00 00 12467899999999776 999999999999999999999999999999
Q ss_pred HHhhhhh
Q 017084 359 VLFFFFF 365 (377)
Q Consensus 359 ~~~~~a~ 365 (377)
.+++.+.
T Consensus 313 ~i~~~~~ 319 (427)
T PRK13013 313 LLERLKR 319 (427)
T ss_pred HHHHHHh
Confidence 9987653
No 8
>PRK06837 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=4.9e-39 Score=322.93 Aligned_cols=274 Identities=14% Similarity=0.126 Sum_probs=227.8
Q ss_pred chHhHHHHHHhccCcchHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEee--------------------c
Q 017084 80 SRACSKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP--------------------L 139 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~--------------------~ 139 (377)
...+.+.+.+++ ++..+++++++++|++|||+|++|.++++||+++|+++|++++.. .
T Consensus 4 ~~~~~~~~~~~i--~~~~~~~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (427)
T PRK06837 4 TPDLTQRILAAV--DAGFDAQVAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYS 81 (427)
T ss_pred chHHHHHHHHHH--HhhhHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccC
Confidence 456778888888 788999999999999999999999999999999999999998641 2
Q ss_pred CCceEEEEecC-C-CCCeEEEecCcCcccCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCC
Q 017084 140 AKTGIRAWVGT-G-GPPFVALRADMDALPIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLK 210 (377)
Q Consensus 140 ~~~~lia~~g~-~-~~~~I~l~aH~DvVP~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~ 210 (377)
+++||++.+++ + ++|+|+|+|||||||+++.+.|.++| .++|++||||+. +++++++.|++.|++.+..++
T Consensus 82 ~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~ 161 (427)
T PRK06837 82 GAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPA 161 (427)
T ss_pred CCceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCC
Confidence 46899999954 3 36899999999999998766776555 368999999994 788888889999998888889
Q ss_pred ceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCc
Q 017084 211 GTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVD 289 (377)
Q Consensus 211 ~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~n 289 (377)
++|.|+|++|||.++ |+..++..|+ ..|++++.++.. + .+ ..+. .|..+++|+++|+++|++.|+.|.|
T Consensus 162 ~~i~~~~~~dEE~~g~g~~~~~~~~~--~~d~~iv~ep~~--~--~i--~~~~--~G~~~~~i~v~G~~~Hs~~p~~g~n 231 (427)
T PRK06837 162 ARVHFQSVIEEESTGNGALSTLQRGY--RADACLIPEPTG--E--KL--VRAQ--VGVIWFRLRVRGAPVHVREAGTGAN 231 (427)
T ss_pred CcEEEEEEeccccCCHhHHHHHhcCc--CCCEEEEcCCCC--C--cc--cccc--ceeEEEEEEEEeeccccCCcccCcC
Confidence 999999999999875 8888887765 479988776532 1 11 1232 2788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc----c-c-----CCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHH
Q 017084 290 PVLAASAAVISLQGLVSR----E-A-----NPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEV 359 (377)
Q Consensus 290 AI~~~~~~i~~l~~~~~~----~-~-----~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~ 359 (377)
|+..+++++..|+++... . . ....+.+++++.++||...|+||+.|++.+++|+.|.++.+++.++|++.
T Consensus 232 Ai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG~~~nvVP~~~~~~~~ir~~p~~~~~~v~~~i~~~ 311 (427)
T PRK06837 232 AIDAAYHLIQALRELEAEWNARKASDPHFEDVPHPINFNVGIIKGGDWASSVPAWCDLDCRIAIYPGVTAADAQAEIEAC 311 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCCCCCCccCCEEEEEEEEeECCCCCHHHHHHHHHHH
Confidence 999999999999776421 0 0 01124578999999999999999999999999999999999999999999
Q ss_pred Hhhhhh
Q 017084 360 LFFFFF 365 (377)
Q Consensus 360 ~~~~a~ 365 (377)
++..+.
T Consensus 312 ~~~~~~ 317 (427)
T PRK06837 312 LAAAAR 317 (427)
T ss_pred HHHHHh
Confidence 987643
No 9
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=100.00 E-value=2.4e-39 Score=319.81 Aligned_cols=257 Identities=18% Similarity=0.242 Sum_probs=212.6
Q ss_pred HHHHHhHcCCC---CCcchHHHHHHHHHHHHhCCCcEEeec---CCce----EEEEe-cCCCCCeEEEecCcCcccCCCC
Q 017084 102 SVRRTIHQNPE---LAFQEFETSRLLRAELDRMEIGYKYPL---AKTG----IRAWV-GTGGPPFVALRADMDALPIQEA 170 (377)
Q Consensus 102 ~~~~~lv~iPs---~s~~E~~~~~~l~~~L~~lG~~v~~~~---~~~~----lia~~-g~~~~~~I~l~aH~DvVP~~~~ 170 (377)
+++++|++||| ++++|.++++||+++|+++|++++... ...+ +++.+ |.+++|+|+|+|||||||+++.
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ill~~H~DtVp~~~~ 81 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNGNEKSLIFNGHYDVVPAGDL 81 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCCCCCEEEEecccccccCCCh
Confidence 57899999999 788999999999999999999987532 2222 44444 5444689999999999999877
Q ss_pred CCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEE
Q 017084 171 VEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAI 242 (377)
Q Consensus 171 ~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~ 242 (377)
++|.++| .++|++||||+. +++++++.+++.|++.+..++++|.|+|++|||.|+ |++.+++.+.+++.|++
T Consensus 82 ~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~~~d~~ 161 (375)
T TIGR01910 82 ELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQRGYFKDADGV 161 (375)
T ss_pred hhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHcCCCCCCCEE
Confidence 7886655 467999999983 789999999999998887889999999999999886 99999998877668999
Q ss_pred EEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhcccc------CCCCCcE
Q 017084 243 FAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREA------NPLDSQV 316 (377)
Q Consensus 243 i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~~------~~~~~~~ 316 (377)
++.++.. .+.+.. +. .|..+++|+++|+++|++.|+.|.|||..++++|.+|+++..... ......+
T Consensus 162 i~~~~~~---~~~v~~--~~--~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t 234 (375)
T TIGR01910 162 LIPEPSG---GDNIVI--GH--KGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSYGFIPGPIT 234 (375)
T ss_pred EECCCCC---CCceEE--Ee--cceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccCCCcc
Confidence 8876532 122222 22 277899999999999999999999999999999999987642211 1123467
Q ss_pred EEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 317 VSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 317 ~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
++++.++||.+.|+||++|++++++|+.+.++.+++.++|++++++.+.
T Consensus 235 ~~i~~i~gG~~~nviP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~ 283 (375)
T TIGR01910 235 FNPGVIKGGDWVNSVPDYCEFSIDVRIIPEENLDEVKQIIEDVVKALSK 283 (375)
T ss_pred ccceeEECCCCcCcCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999987653
No 10
>PRK13004 peptidase; Reviewed
Probab=100.00 E-value=9.6e-39 Score=318.10 Aligned_cols=266 Identities=16% Similarity=0.194 Sum_probs=222.5
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCCCCCeEEEecCcC
Q 017084 84 SKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMD 163 (377)
Q Consensus 84 ~~~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~~~~~I~l~aH~D 163 (377)
.+.+.+++ ++.++++++++++|++|||+|++|.+++++|.++|+++|+++...+...|+++.++++ .|+|+|+||+|
T Consensus 3 ~~~~~~~~--~~~~~~~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~n~~a~~~~~-~~~i~~~~H~D 79 (399)
T PRK13004 3 FKLILMLA--EKYKADMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKVEIDPMGNVLGYIGHG-KKLIAFDAHID 79 (399)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEEEEcCCCeEEEEECCC-CcEEEEEeccC
Confidence 36777888 7888999999999999999999999999999999999999865444457899998665 48999999999
Q ss_pred cccCCCCCCCCccc----ccCCeEeeCCc-h--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCc-C-cHHHHHHcC
Q 017084 164 ALPIQEAVEWEYKS----KVAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-N-GAKRMMADG 234 (377)
Q Consensus 164 vVP~~~~~~w~~~p----~~~G~l~GrG~-~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g-~-Ga~~li~~g 234 (377)
|||+++.++|.++| .++|++||||+ | ++++++++|++.|++.+..++++|.|+|++|||.+ + |++.+++.+
T Consensus 80 tVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~ 159 (399)
T PRK13004 80 TVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEED 159 (399)
T ss_pred ccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhc
Confidence 99988777787766 35899999999 4 89999999999999988888999999999999975 3 678888864
Q ss_pred CCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhcc--ccCCC
Q 017084 235 ALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSR--EANPL 312 (377)
Q Consensus 235 ~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~--~~~~~ 312 (377)
.+ .+|++++.++.. ..+. .+. .|..+++|+++|+++|++.|+.|.|||..+++++..|+.+... .....
T Consensus 160 ~~-~~d~~i~~e~~~----~~i~--~~~--~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~ 230 (399)
T PRK13004 160 KI-KPDFVVITEPTD----LNIY--RGQ--RGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLKEDPFL 230 (399)
T ss_pred CC-CCCEEEEccCCC----CceE--Eec--ceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccccccCCcC
Confidence 44 479999877642 1222 122 2778999999999999999999999999999999999887432 22223
Q ss_pred CCcEEEEEEEeeC-cccceecCcEEEEEEEecCChhhHHHHHHHHHHHHh
Q 017084 313 DSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLF 361 (377)
Q Consensus 313 ~~~~~~v~~i~gG-~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~ 361 (377)
+..+++++.+.+| .+.|+||++|++++++|+++.++.+++.++|++...
T Consensus 231 ~~~~~~v~~i~~g~~~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~ 280 (399)
T PRK13004 231 GKGTLTVSDIFSTSPSRCAVPDSCAISIDRRLTVGETWESVLAEIRALPA 280 (399)
T ss_pred CCceEEEeeeecCCCCCCccCCEEEEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 4457888888876 599999999999999999999999999999998843
No 11
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=100.00 E-value=1.4e-38 Score=318.04 Aligned_cols=263 Identities=17% Similarity=0.219 Sum_probs=221.5
Q ss_pred HHHHHhccCcchHHHHHHHHHHhHcCCCCCcch---HHHHHHHHHHHHhCCCcEEeec----CCceEEEEecCCCCCeEE
Q 017084 85 KEVMELARRPETVDWLKSVRRTIHQNPELAFQE---FETSRLLRAELDRMEIGYKYPL----AKTGIRAWVGTGGPPFVA 157 (377)
Q Consensus 85 ~~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~E---~~~~~~l~~~L~~lG~~v~~~~----~~~~lia~~g~~~~~~I~ 157 (377)
+++.+++ ++.++++++++++|++|||.+++| .++++||+++|+++|+++++.. .++|+++.+++.++|+|+
T Consensus 26 ~~~~~~~--~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~~~~il 103 (410)
T PRK06133 26 AELLAAA--QQEQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTGKRRIM 103 (410)
T ss_pred HHHHHHH--HHhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCCCceEE
Confidence 5577778 788899999999999999999875 4899999999999999987643 357999999554468999
Q ss_pred EecCcCcccCCCCCCCCccc--ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHH
Q 017084 158 LRADMDALPIQEAVEWEYKS--KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMM 231 (377)
Q Consensus 158 l~aH~DvVP~~~~~~w~~~p--~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li 231 (377)
|+||+||||++. .|.+.| .++|++||||+. +++++++++++.|++.+..++++|.|+|++|||.|+ |++.++
T Consensus 104 l~~H~D~Vp~~~--~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~ 181 (410)
T PRK06133 104 LIAHMDTVYLPG--MLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGSPGSRELI 181 (410)
T ss_pred EEeecCccCCCC--ccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCCccHHHHH
Confidence 999999999853 476665 578999999974 889999999999998887788999999999999886 999998
Q ss_pred HcCCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCC-CCCCCCcHHHHHHHHHHHHHhhhccccC
Q 017084 232 ADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-NPHRSVDPVLAASAAVISLQGLVSREAN 310 (377)
Q Consensus 232 ~~g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~-~p~~g~nAI~~~~~~i~~l~~~~~~~~~ 310 (377)
+... .+.|+++..+++. +.+.+.+. . .|..+++|+++|+++|++ .|+.|.|||..+++++..|+++..
T Consensus 182 ~~~~-~~~d~~i~~ep~~--~~~~v~~~--~--~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~~---- 250 (410)
T PRK06133 182 AELA-AQHDVVFSCEPGR--AKDALTLA--T--SGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLGD---- 250 (410)
T ss_pred HHHh-ccCCEEEEeCCCC--CCCCEEEe--c--cceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhccC----
Confidence 7633 3689999988653 21233322 1 277899999999999986 799999999999999999987632
Q ss_pred CCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 311 PLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 311 ~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
+....+++++.++||.+.|+||++|++.+++|+.+.++.+++.++|++++++
T Consensus 251 ~~~~~t~~~~~i~gG~~~nvIP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~ 302 (410)
T PRK06133 251 PAKGTTLNWTVAKAGTNRNVIPASASAQADVRYLDPAEFDRLEADLQEKVKN 302 (410)
T ss_pred CCCCeEEEeeEEECCCCCceeCCccEEEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 2234678899999999999999999999999999999999999999999987
No 12
>PRK07338 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-38 Score=315.20 Aligned_cols=264 Identities=16% Similarity=0.218 Sum_probs=220.2
Q ss_pred HHHHHhccCcchHHHHHHHHHHhHcCCCCCcch---HHHHHHHHHHHHhCCCcEEeec-----------------CCceE
Q 017084 85 KEVMELARRPETVDWLKSVRRTIHQNPELAFQE---FETSRLLRAELDRMEIGYKYPL-----------------AKTGI 144 (377)
Q Consensus 85 ~~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~E---~~~~~~l~~~L~~lG~~v~~~~-----------------~~~~l 144 (377)
.++.+++ ++..+++++.+++|++|||.|+++ .++++||+++|+++|++++... .+.|+
T Consensus 6 ~~~~~~~--~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl 83 (402)
T PRK07338 6 RAVLDLI--DDRQAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPAL 83 (402)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeE
Confidence 4567777 778899999999999999999774 5799999999999999987531 11589
Q ss_pred EEEecCCCCCeEEEecCcCcccCCCCCCCCccc---ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEe
Q 017084 145 RAWVGTGGPPFVALRADMDALPIQEAVEWEYKS---KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQ 218 (377)
Q Consensus 145 ia~~g~~~~~~I~l~aH~DvVP~~~~~~w~~~p---~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~ 218 (377)
+++++++.+++|+|+|||||||++ ..||.+ +++|++||||+. +++++++.|+++|++.+..++++|.|+|+
T Consensus 84 ~a~~~~~~~~~lll~gH~DvVp~~---~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~~ 160 (402)
T PRK07338 84 HVSVRPEAPRQVLLTGHMDTVFPA---DHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLIN 160 (402)
T ss_pred EEEECCCCCccEEEEeecCccCCC---CCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 999954434689999999999985 368876 578999999994 88999999999998877778899999999
Q ss_pred cCCCCcC-cHHHHHHcCCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCC-CCCCCcHHHHHHH
Q 017084 219 PAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN-PHRSVDPVLAASA 296 (377)
Q Consensus 219 ~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~-p~~g~nAI~~~~~ 296 (377)
+|||.|+ |++.+++.+. .+.+++++.+|+. +.+.+... . .|..+++|+++|+++|++. |+.|.|||..|++
T Consensus 161 ~dEE~g~~g~~~~~~~~~-~~~~~~i~~ep~~--~~~~v~~~--~--kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~ 233 (402)
T PRK07338 161 PDEEIGSPASAPLLAELA-RGKHAALTYEPAL--PDGTLAGA--R--KGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAAE 233 (402)
T ss_pred CCcccCChhhHHHHHHHh-ccCcEEEEecCCC--CCCcEEee--c--ceeEEEEEEEEeEcccCCCCcccCccHHHHHHH
Confidence 9999986 9999888743 3578888887642 22333221 1 2678999999999999995 9999999999999
Q ss_pred HHHHHHhhhccccCCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhh
Q 017084 297 AVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFF 364 (377)
Q Consensus 297 ~i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a 364 (377)
++..|+++... ....+++++.++||.+.|+||++|++++++|+.+.++.+++.++|+++++..+
T Consensus 234 ~i~~l~~l~~~----~~~~t~~vg~i~gG~~~nvVP~~a~~~~d~R~~~~~~~~~v~~~i~~~~~~~~ 297 (402)
T PRK07338 234 LALALHALNGQ----RDGVTVNVAKIDGGGPLNVVPDNAVLRFNIRPPTPEDAAWAEAELKKLIAQVN 297 (402)
T ss_pred HHHHHHhhhcc----CCCcEEEEEEEecCCCCceeccccEEEEEeccCCHHHHHHHHHHHHHHHhccc
Confidence 99999886432 23468899999999999999999999999999999999999999999998765
No 13
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=100.00 E-value=3.4e-38 Score=313.75 Aligned_cols=265 Identities=15% Similarity=0.185 Sum_probs=218.7
Q ss_pred HHHHhccCcchHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCCCCCeEEEecCcCcc
Q 017084 86 EVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDAL 165 (377)
Q Consensus 86 ~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~~~~~I~l~aH~DvV 165 (377)
++.+++ +++++++++++++|++|||++++|.+++++|.++|+++|+++.......|+++.+|++ .|+|+|+||+|||
T Consensus 3 ~~~~~~--~~~~~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~v~~~~g~~-~~~l~l~~H~DtV 79 (395)
T TIGR03526 3 QIKSEA--EKYRGDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDTV 79 (395)
T ss_pred hHHHHH--HHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEEEcCCCcEEEEeCCC-CCEEEEEeecccc
Confidence 355667 6778999999999999999999999999999999999999854333446899998643 5899999999999
Q ss_pred cCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCc-C-cHHHHHHcCCC
Q 017084 166 PIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-N-GAKRMMADGAL 236 (377)
Q Consensus 166 P~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g-~-Ga~~li~~g~~ 236 (377)
|+++.+.|.++| .++|++||||+. +++++++.|++.|++.+..+++++.|+|++|||.+ + |...+++.+.+
T Consensus 80 p~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~~ 159 (395)
T TIGR03526 80 GIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDKI 159 (395)
T ss_pred CCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccCC
Confidence 998878897776 367999999973 88999999999999887777889999999999954 3 67778776555
Q ss_pred CCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccc-cCC-CCC
Q 017084 237 EDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE-ANP-LDS 314 (377)
Q Consensus 237 ~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~-~~~-~~~ 314 (377)
..|++++.+|+. ..+ ..+. .|..+++|+++|+++|++.|+.|.|||..|++++.+|+.+.... .++ .+.
T Consensus 160 -~~d~~i~~ep~~----~~i--~~g~--~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~ 230 (395)
T TIGR03526 160 -KPEFVVITEPTD----MNI--YRGQ--RGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGK 230 (395)
T ss_pred -CCCEEEecCCCC----ceE--EEEc--ceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhhcCCcccCc
Confidence 479998876532 122 2232 27889999999999999999999999999999999998764321 112 234
Q ss_pred cEEEEEEEeeCc-ccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 315 QVVSVTYFNGGD-HLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 315 ~~~~v~~i~gG~-~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
.+++++.+++|. +.|+||++|++++++|+++.++.+++.++|++.++.
T Consensus 231 ~~~~v~~i~~g~~~~nviP~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~ 279 (395)
T TIGR03526 231 GTLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAV 279 (395)
T ss_pred cceeeeeeecCCCCCCccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 688999999775 899999999999999999999999999999998764
No 14
>PRK08596 acetylornithine deacetylase; Validated
Probab=100.00 E-value=3.4e-38 Score=316.27 Aligned_cols=266 Identities=18% Similarity=0.166 Sum_probs=218.4
Q ss_pred HHHhccCcchHHHHHHHHHHhHcCCCCCc---chHHHHHHHHHHHHhCCCcEEee---cCCceEEEEecC-CC--CCeEE
Q 017084 87 VMELARRPETVDWLKSVRRTIHQNPELAF---QEFETSRLLRAELDRMEIGYKYP---LAKTGIRAWVGT-GG--PPFVA 157 (377)
Q Consensus 87 ~~~~~~~~~~~~~li~~~~~lv~iPs~s~---~E~~~~~~l~~~L~~lG~~v~~~---~~~~~lia~~g~-~~--~~~I~ 157 (377)
+++++ +...+++++++++|++|||+++ +|.++++||+++|+++|++++.. .++.|+++.+++ ++ +|+|+
T Consensus 4 ~~~~i--~~~~~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~ll 81 (421)
T PRK08596 4 LLEQI--ELRKDELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLI 81 (421)
T ss_pred HHHHH--HhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEE
Confidence 45666 6678899999999999999984 78899999999999999998763 356899999943 32 36899
Q ss_pred EecCcCcccCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHH
Q 017084 158 LRADMDALPIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKR 229 (377)
Q Consensus 158 l~aH~DvVP~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~ 229 (377)
|+||+||||+++.+.|+++| .++|++||||+. +++++++.|+++|++.+..++++|.|+|++|||+|+ |+++
T Consensus 82 l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~G~~~ 161 (421)
T PRK08596 82 INGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGEAGTLQ 161 (421)
T ss_pred EeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCcCHHH
Confidence 99999999998777787665 468999999993 899999999999999888899999999999999986 9999
Q ss_pred HHHcCCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEee----------CCCCCCCCCCCcHHHHHHHHHH
Q 017084 230 MMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGK----------KGGAANPHRSVDPVLAASAAVI 299 (377)
Q Consensus 230 li~~g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~----------~~Hs~~p~~g~nAI~~~~~~i~ 299 (377)
+++.+. ..|++++.+++... . .+. .|...+.++++|+ .+|++.|+.|.|||..|+++|.
T Consensus 162 ~~~~~~--~~d~~i~~ep~~~~---~----~~~--~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~ 230 (421)
T PRK08596 162 CCERGY--DADFAVVVDTSDLH---M----QGQ--GGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQ 230 (421)
T ss_pred HHhcCC--CCCEEEECCCCCCc---c----ccc--cceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHH
Confidence 999864 47999988764321 1 111 1455556777765 4799999999999999999999
Q ss_pred HHHhhhcc-----cc--CCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 300 SLQGLVSR-----EA--NPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 300 ~l~~~~~~-----~~--~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
+|+.+... .. ......+++++.|+||...|+||+.|++++|+|+.|+++.+++.++|++.++..+.
T Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~ 303 (421)
T PRK08596 231 SLQELERHWAVMKSYPGFPPGTNTINPAVIEGGRHAAFIADECRLWITVHFYPNETYEQVIKEIEEYIGKVAA 303 (421)
T ss_pred HHHHHHHHHhhcccCccCCCCCcceeeeeeeCCCCCCccCceEEEEEEeeeCCCCCHHHHHHHHHHHHHHHHh
Confidence 99876311 11 11234678999999999999999999999999999999999999999999987543
No 15
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=2.6e-38 Score=314.43 Aligned_cols=266 Identities=19% Similarity=0.214 Sum_probs=213.7
Q ss_pred chHHHHHHHHHHhHcCCCCCc-----chHHHHHHHHHHHHhCCCc-EEeec-------C--CceEEEEecCC-CCCeEEE
Q 017084 95 ETVDWLKSVRRTIHQNPELAF-----QEFETSRLLRAELDRMEIG-YKYPL-------A--KTGIRAWVGTG-GPPFVAL 158 (377)
Q Consensus 95 ~~~~~li~~~~~lv~iPs~s~-----~E~~~~~~l~~~L~~lG~~-v~~~~-------~--~~~lia~~g~~-~~~~I~l 158 (377)
++.+++++++++|++|||+|+ .|.+++++|+++|+++|++ ++... + ++|+++.++++ ++++|+|
T Consensus 2 ~~~~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~~~~lll 81 (400)
T PRK13983 2 ELRDEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDGKRTLWI 81 (400)
T ss_pred chHHHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCCCCeEEE
Confidence 457889999999999999984 4889999999999999998 76421 1 58999999543 4579999
Q ss_pred ecCcCcccCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC--cHHH
Q 017084 159 RADMDALPIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GAKR 229 (377)
Q Consensus 159 ~aH~DvVP~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~--Ga~~ 229 (377)
+||+||||+++.+.|.++| .++|++||||+. +++++++.|++.|++.+..++++|.|+|++|||.|+ |++.
T Consensus 82 ~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~~ 161 (400)
T PRK13983 82 ISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQY 161 (400)
T ss_pred EeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccHHH
Confidence 9999999998777787666 357999999974 677777889999998888899999999999999875 8999
Q ss_pred HHHc--CCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHh-hhc
Q 017084 230 MMAD--GALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQG-LVS 306 (377)
Q Consensus 230 li~~--g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~-~~~ 306 (377)
+++. +.+.+.|++++.+. .+|.+.. +..+. .|..+++|+++|+++|++.|+.|+||+..+++++..++. +..
T Consensus 162 ~~~~~~~~~~~~d~~i~~~~--~~~~~~~-i~~~~--~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 236 (400)
T PRK13983 162 LLKKHPELFKKDDLILVPDA--GNPDGSF-IEIAE--KSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHE 236 (400)
T ss_pred HHhhcccccCCCCEEEEecC--CCCCCce-eEEee--cceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9986 65666788876442 3444432 11222 277899999999999999999999999999999999987 321
Q ss_pred c---ccCCC--CCcEEEEEEEeeC-cccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 307 R---EANPL--DSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 307 ~---~~~~~--~~~~~~v~~i~gG-~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
. ....+ ...+++++.+.+| ...|+||++|++++++|+++.++.+++.++|+++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~nvvp~~~~~~~diR~~p~~~~~~v~~~l~~~~~~~~~ 301 (400)
T PRK13983 237 KFNAKDPLFDPPYSTFEPTKKEANVDNINTIPGRDVFYFDCRVLPDYDLDEVLKDIKEIADEFEE 301 (400)
T ss_pred hhcccccccCCCCcccccceeecCCcCCcccCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 1 00011 1134566777776 5899999999999999999999999999999999987653
No 16
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=3.3e-38 Score=311.35 Aligned_cols=261 Identities=17% Similarity=0.216 Sum_probs=213.6
Q ss_pred HHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEee--cCCceEEEEecCCCCCeEEEecCcCcccCCCCCCCCcc
Q 017084 99 WLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP--LAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYK 176 (377)
Q Consensus 99 ~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~--~~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~~~ 176 (377)
++++++++|++|||+|+.|.++++++.++|+++|++++.. .+..|+++++|+ ++|+|+|+||+||||+++.+.|.++
T Consensus 3 ~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~n~~~~~g~-~~~~i~l~~H~D~Vp~g~~~~w~~~ 81 (375)
T PRK13009 3 DVLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCERMDFGDVKNLWARRGT-EGPHLCFAGHTDVVPPGDLEAWTSP 81 (375)
T ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeEEEeccCCCcEEEEEecC-CCCEEEEEeecccCCCCCcccCCCC
Confidence 5789999999999999999999999999999999998753 345799999865 4699999999999999877788665
Q ss_pred c----ccCCeEeeCCc-h--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC--cHHHHHHcCC--CCCccEEEEE
Q 017084 177 S----KVAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GAKRMMADGA--LEDVEAIFAV 245 (377)
Q Consensus 177 p----~~~G~l~GrG~-~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~--Ga~~li~~g~--~~~~d~~i~~ 245 (377)
| .++|++||||+ | +++++++.+++.|++.+..++++|.|+|++|||.++ |++.+++... ...+|++++.
T Consensus 82 Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~ 161 (375)
T PRK13009 82 PFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVG 161 (375)
T ss_pred CCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcCCCEEEEc
Confidence 5 36899999999 4 788899999999988777889999999999999863 8998875311 1147999888
Q ss_pred ecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccc-cCCCCCcEEEEEEEee
Q 017084 246 HVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE-ANPLDSQVVSVTYFNG 324 (377)
Q Consensus 246 ~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~-~~~~~~~~~~v~~i~g 324 (377)
+++.....+. .+..+.. |..+++|+++|+++|++.|+.|.||+..+++++..|+....+. ...+.+.+++++.++|
T Consensus 162 ep~~~~~~~~-~i~~g~~--g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~i~~ 238 (375)
T PRK13009 162 EPTSTERLGD-VIKNGRR--GSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEGNEFFPPTSLQITNIDA 238 (375)
T ss_pred CCCcccCCCC-eEEEecc--eEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccCCCccCCCceEEEEEEec
Confidence 7654322211 1122322 6778999999999999999999999999999999998753221 1233456789999998
Q ss_pred Cc-ccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhh
Q 017084 325 GD-HLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFF 363 (377)
Q Consensus 325 G~-~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~ 363 (377)
|. ..|+||++|++.+++|+++.++.+++.++|+++++..
T Consensus 239 G~~~~nvip~~~~~~~diR~~~~~~~e~i~~~i~~~~~~~ 278 (375)
T PRK13009 239 GTGATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDKH 278 (375)
T ss_pred CCCCCcccCCcEEEEEEEecCCCCCHHHHHHHHHHHHHhc
Confidence 86 7899999999999999999999999999999998753
No 17
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=100.00 E-value=2.6e-38 Score=311.77 Aligned_cols=257 Identities=21% Similarity=0.305 Sum_probs=209.1
Q ss_pred HHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEee--cCCceEEEEecCCCCCeEEEecCcCcccCCCCCCCCccc-
Q 017084 101 KSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP--LAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKS- 177 (377)
Q Consensus 101 i~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~--~~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~~~p- 177 (377)
++++++|++|||+|++|.++++||+++|+++|+++++. .+..|+++.+++ ++|+|+|+||+||||+++.+.|.++|
T Consensus 2 ~~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~~g~-~~~~i~~~~H~DtVp~~~~~~W~~~p~ 80 (370)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGT-GEPVLAFAGHTDVVPAGPEEQWSSPPF 80 (370)
T ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEEEEEecCCCceEEEEecC-CCcEEEEEccccccCCCCccccccCCC
Confidence 67899999999999999999999999999999998763 245689998765 36899999999999998766775554
Q ss_pred ---ccCCeEeeCCc-h--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC--cHHHHHHcCC--CCCccEEEEEec
Q 017084 178 ---KVAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GAKRMMADGA--LEDVEAIFAVHV 247 (377)
Q Consensus 178 ---~~~G~l~GrG~-~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~--Ga~~li~~g~--~~~~d~~i~~~~ 247 (377)
.++|++||||+ | +++++++.+++.|++.+..++++|.|+|++|||.++ |++.+++... ...+|++++.++
T Consensus 81 ~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 160 (370)
T TIGR01246 81 EPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEP 160 (370)
T ss_pred CcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 46799999999 5 778888888888888777888999999999999863 8888875311 114799998887
Q ss_pred CCCCCcc-eeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhc-cccCCCCCcEEEEEEEeeC
Q 017084 248 SHEHPTG-VIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVS-REANPLDSQVVSVTYFNGG 325 (377)
Q Consensus 248 ~~~~p~g-~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~-~~~~~~~~~~~~v~~i~gG 325 (377)
+...+.+ .+ ..+. .|..+++++++|+++|++.|+.|.||+..|++++..|++..- .....+.+.+++++.++||
T Consensus 161 ~~~~~~~~~i--~~~~--~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~t~~i~~i~~g 236 (370)
T TIGR01246 161 SSVKKLGDVI--KNGR--RGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDEGNEFFPPTSLQITNIHAG 236 (370)
T ss_pred CCcccCCceE--EEee--eEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhccCCccCCCCceEeeeeecC
Confidence 5432222 22 1122 267899999999999999999999999999999999976521 1112234568899999998
Q ss_pred c-ccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 326 D-HLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 326 ~-~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
. ..|+||++|++++++|++|.++.+++.++|+++++.
T Consensus 237 ~~~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~ 274 (370)
T TIGR01246 237 TGANNVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQ 274 (370)
T ss_pred CCCCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6 689999999999999999999999999999999875
No 18
>PRK05111 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=3.5e-38 Score=312.18 Aligned_cols=255 Identities=17% Similarity=0.231 Sum_probs=208.5
Q ss_pred HHHHHHHHHhHcCCCCCcch-------HHHHHHHHHHHHhCCCcEEeec-----CCceEEEEecCCCCCeEEEecCcCcc
Q 017084 98 DWLKSVRRTIHQNPELAFQE-------FETSRLLRAELDRMEIGYKYPL-----AKTGIRAWVGTGGPPFVALRADMDAL 165 (377)
Q Consensus 98 ~~li~~~~~lv~iPs~s~~E-------~~~~~~l~~~L~~lG~~v~~~~-----~~~~lia~~g~~~~~~I~l~aH~DvV 165 (377)
+++++++++|++|||+|++| .++++||+++|+++|++++... ++.|+++++|++ .++|+|+||||||
T Consensus 5 ~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~g~~-~~~il~~~H~Dvv 83 (383)
T PRK05111 5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASLGSG-EGGLLLAGHTDTV 83 (383)
T ss_pred hHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEeCCC-CCeEEEEeeecee
Confidence 47999999999999999875 5799999999999999987531 457999999654 4689999999999
Q ss_pred cCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCC
Q 017084 166 PIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALE 237 (377)
Q Consensus 166 P~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~ 237 (377)
|+++ +.|.++| .++|++||||+. +++++++.+++.|++. .++++|.|+|++|||.|+ |++.+++.+.++
T Consensus 84 p~~~-~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~ 160 (383)
T PRK05111 84 PFDE-GRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KLKKPLYILATADEETSMAGARAFAEATAIR 160 (383)
T ss_pred cCCC-CcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CCCCCeEEEEEeccccCcccHHHHHhcCCCC
Confidence 9854 4565444 468999999983 8899999999999864 467899999999999886 999999887654
Q ss_pred CccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhcc---c-cCC--
Q 017084 238 DVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSR---E-ANP-- 311 (377)
Q Consensus 238 ~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~---~-~~~-- 311 (377)
.|+++..+|+...+ . .+. .|..+++|+++|+++|++.|+.|.|||..+++++.+++.+... . ..+
T Consensus 161 -~d~~i~~ep~~~~~----~--~~~--~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 231 (383)
T PRK05111 161 -PDCAIIGEPTSLKP----V--RAH--KGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYHNPAF 231 (383)
T ss_pred -CCEEEEcCCCCCce----e--ecc--cceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCCCccC
Confidence 58888766542111 1 121 2778899999999999999999999999999999998775311 1 111
Q ss_pred -CCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 312 -LDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 312 -~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
....+++++.++||...|+||++|++.+++|+.+.++.+++.++|++.+++.+.
T Consensus 232 ~~~~~t~~i~~i~gg~~~NvVP~~~~~~~diR~~p~~~~~~v~~~i~~~i~~~~~ 286 (383)
T PRK05111 232 TVPYPTLNLGHIHGGDAPNRICGCCELHFDIRPLPGMTLEDLRGLLREALAPVSE 286 (383)
T ss_pred CCCCCceeEeeeecCCcCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 124678999999999999999999999999999999999999999999987644
No 19
>PRK07522 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=3.4e-38 Score=312.36 Aligned_cols=254 Identities=16% Similarity=0.201 Sum_probs=207.5
Q ss_pred HHHHHHHHHhHcCCCCCcch-HHHHHHHHHHHHhCCCcEEeec----CCceEEEEecCCCCCeEEEecCcCcccCCCCCC
Q 017084 98 DWLKSVRRTIHQNPELAFQE-FETSRLLRAELDRMEIGYKYPL----AKTGIRAWVGTGGPPFVALRADMDALPIQEAVE 172 (377)
Q Consensus 98 ~~li~~~~~lv~iPs~s~~E-~~~~~~l~~~L~~lG~~v~~~~----~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~ 172 (377)
.++++++++|++|||+|++| .++++|++++|+++|+++++.. +++|++++++++.+|+|+|+||+||||+++ +.
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~~~~~ill~~H~Dtv~~~~-~~ 82 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPADRGGIVLSGHTDVVPVDG-QA 82 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCCCCCeEEEEeecccccCCC-CC
Confidence 57899999999999999887 5999999999999999987532 357999999755468999999999999865 45
Q ss_pred CCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCC--CCccEE
Q 017084 173 WEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGAL--EDVEAI 242 (377)
Q Consensus 173 w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~--~~~d~~ 242 (377)
|.++| .++|++||||+. +++++++++++.|++. .++++|.|+|++|||.|+ |++++++.... ...|++
T Consensus 83 W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~ 160 (385)
T PRK07522 83 WTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLHLAFSYDEEVGCLGVPSMIARLPERGVKPAGC 160 (385)
T ss_pred CCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEEEEEEeccccCCccHHHHHHHhhhcCCCCCEE
Confidence 75554 368999999983 8999999999999875 467899999999999875 99999875221 136888
Q ss_pred EEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccccC--C----C--CC
Q 017084 243 FAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREAN--P----L--DS 314 (377)
Q Consensus 243 i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~~~--~----~--~~ 314 (377)
+..+|.. ..+. .+. .|..+++|+++|+++|++.|+.|.||+..++++|..|+++..+... + + ..
T Consensus 161 i~~ep~~----~~~~--~~~--~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 232 (385)
T PRK07522 161 IVGEPTS----MRPV--VGH--KGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAPGPFDALFDPPY 232 (385)
T ss_pred EEccCCC----Ceee--eee--cceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCc
Confidence 8755432 1121 122 2778999999999999999999999999999999999876422111 1 1 12
Q ss_pred cEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 315 QVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 315 ~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
.+++++.++||...|+||++|++++++|+++.++.+++.++|++.+++
T Consensus 233 ~t~~i~~i~gG~~~nviP~~a~~~~diR~~~~~~~~~i~~~i~~~i~~ 280 (385)
T PRK07522 233 STLQTGTIQGGTALNIVPAECEFDFEFRNLPGDDPEAILARIRAYAEA 280 (385)
T ss_pred ceeEEeeeecCccccccCCceEEEEEEccCCCCCHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999999999999999987
No 20
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=100.00 E-value=7.2e-38 Score=311.39 Aligned_cols=265 Identities=15% Similarity=0.206 Sum_probs=217.1
Q ss_pred HHHHhccCcchHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCCCCCeEEEecCcCcc
Q 017084 86 EVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDAL 165 (377)
Q Consensus 86 ~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~~~~~I~l~aH~DvV 165 (377)
++.+.+ ++..+++++++++|++|||++++|.++++||.++|+++|+++.......|+++.+|.+ +|+|+|+||+|||
T Consensus 3 ~~~~~i--~~~~~~~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~n~~~~~g~~-~~~l~l~~H~DtV 79 (395)
T TIGR03320 3 QIKSEA--KKYRGDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDTV 79 (395)
T ss_pred hHHHHH--HHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEEECCCCCEEEEeCCC-CcEEEEEeccccc
Confidence 455666 6778899999999999999999999999999999999999853333446899998643 5899999999999
Q ss_pred cCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcCc--HHHHHHcCCC
Q 017084 166 PIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNG--AKRMMADGAL 236 (377)
Q Consensus 166 P~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~G--a~~li~~g~~ 236 (377)
|+++.+.|.++| .++|++||||+. +++++++.|+++|++.+..+++++.|+|++|||.++| .+.+++...+
T Consensus 80 p~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~~ 159 (395)
T TIGR03320 80 GIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDGI 159 (395)
T ss_pred CCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcCC
Confidence 998877897766 368999999983 8899999999999988877888999999999997654 4566665334
Q ss_pred CCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccc-cCC-CCC
Q 017084 237 EDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE-ANP-LDS 314 (377)
Q Consensus 237 ~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~-~~~-~~~ 314 (377)
.+|++++.+|+. ..+. .+. .|..+++|+++|+++|++.|+.|.|||..+++++..|+++.... .++ .+.
T Consensus 160 -~~d~~iv~ep~~----~~i~--~g~--~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~ 230 (395)
T TIGR03320 160 -KPEFVVITEPTD----MNIY--RGQ--RGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGK 230 (395)
T ss_pred -CCCEEEEcCCCc----cceE--Eec--ceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCcccCc
Confidence 479999877532 1222 222 27889999999999999999999999999999999998764321 112 234
Q ss_pred cEEEEEEEeeCc-ccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 315 QVVSVTYFNGGD-HLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 315 ~~~~v~~i~gG~-~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
.+++++.+++|. +.|+||++|++.+++|+.+.++.+++.++|++.+..
T Consensus 231 ~t~~v~~i~~g~~~~NviP~~~~~~~diR~~p~~~~~~i~~~i~~~~~~ 279 (395)
T TIGR03320 231 GTLTVSEIFFSSPSRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAV 279 (395)
T ss_pred CceeeeeeecCCCCcCccCCEEEEEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 578899999875 899999999999999999999999999999998754
No 21
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=100.00 E-value=8.8e-38 Score=306.90 Aligned_cols=251 Identities=20% Similarity=0.286 Sum_probs=206.3
Q ss_pred HHHHHhHcCCCCCcch-HHHHHHHHHHHHhCCCcEEeec-----CCceEEEEecCCCCCeEEEecCcCcccCCCCCCCCc
Q 017084 102 SVRRTIHQNPELAFQE-FETSRLLRAELDRMEIGYKYPL-----AKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEY 175 (377)
Q Consensus 102 ~~~~~lv~iPs~s~~E-~~~~~~l~~~L~~lG~~v~~~~-----~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~~ 175 (377)
+++++|++|||+++++ .++++||+++|+++|++++... +++|+++.+++.++|+|+|+||+||||+++ +.|.+
T Consensus 1 ~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~~~~~i~l~~H~Dtvp~~~-~~w~~ 79 (364)
T TIGR01892 1 EILTKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPSGAGGLALSGHTDVVPYDD-AAWTR 79 (364)
T ss_pred ChHHHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCCCCCeEEEEcccccccCCC-CcCCC
Confidence 3688999999999865 7999999999999999987542 357999999654468999999999999875 46765
Q ss_pred cc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEec
Q 017084 176 KS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHV 247 (377)
Q Consensus 176 ~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~ 247 (377)
+| +++|++||||+. ++++++|++++.|++. .++++|.|+|++|||.|+ |++++++.+.+ ..|++++.+|
T Consensus 80 ~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~~EE~g~~G~~~~~~~~~~-~~d~~i~~ep 156 (364)
T TIGR01892 80 DPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTADEEVGCTGAPKMIEAGAG-RPRHAIIGEP 156 (364)
T ss_pred CCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEeccccCCcCHHHHHHhcCC-CCCEEEECCC
Confidence 55 467999999963 8899999999999875 368899999999999885 99999998754 4788877554
Q ss_pred CCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccc-----cCCC--CCcEEEEE
Q 017084 248 SHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE-----ANPL--DSQVVSVT 320 (377)
Q Consensus 248 ~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~-----~~~~--~~~~~~v~ 320 (377)
+ +..... +. .|..+++|+++|+++|++.|+.|.|||..+++++.+|+++.... ..++ ...+++++
T Consensus 157 ~-----~~~~~~-~~--~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (364)
T TIGR01892 157 T-----RLIPVR-AH--KGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLLREDLDEGFTPPYTTLNIG 228 (364)
T ss_pred C-----CceeEE-ee--ceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCceEEEe
Confidence 3 322211 11 26778999999999999999999999999999999998763210 0111 23689999
Q ss_pred EEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhh
Q 017084 321 YFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFF 364 (377)
Q Consensus 321 ~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a 364 (377)
.++||...|+||++|++.+++|++|.++.+++.++|++.++..+
T Consensus 229 ~i~gg~~~nviP~~~~~~~diR~~p~~~~~~v~~~i~~~~~~~~ 272 (364)
T TIGR01892 229 VIQGGKAVNIIPGACEFVFEWRPIPGMDPEELLQLLETIAQALV 272 (364)
T ss_pred eeecCCCCcccCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998764
No 22
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=100.00 E-value=9.2e-38 Score=311.08 Aligned_cols=263 Identities=18% Similarity=0.203 Sum_probs=212.1
Q ss_pred HHHHHHHHHHhHcCCCCCcc--hHHHHHHHHHHHHhCCCcEEee---cCCceEEEEe-cCCC-CCeEEEecCcCcccCCC
Q 017084 97 VDWLKSVRRTIHQNPELAFQ--EFETSRLLRAELDRMEIGYKYP---LAKTGIRAWV-GTGG-PPFVALRADMDALPIQE 169 (377)
Q Consensus 97 ~~~li~~~~~lv~iPs~s~~--E~~~~~~l~~~L~~lG~~v~~~---~~~~~lia~~-g~~~-~~~I~l~aH~DvVP~~~ 169 (377)
.+++++++++|++|||++++ |.+++++++++|+++|++++.. .++.|+++.+ |+++ +|+|+|+|||||||+++
T Consensus 8 ~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~ 87 (400)
T TIGR01880 8 EDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVFR 87 (400)
T ss_pred hHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCCc
Confidence 67889999999999999764 6789999999999999997642 2567899999 4333 48999999999999865
Q ss_pred CCCCC---cccc--cCCeEeeCCc-h--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC--cHHHHHHcCCCCCc
Q 017084 170 AVEWE---YKSK--VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GAKRMMADGALEDV 239 (377)
Q Consensus 170 ~~~w~---~~p~--~~G~l~GrG~-~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~--Ga~~li~~g~~~~~ 239 (377)
+.|. |.+. ++|++||||+ | +++++++.|++.|++.+..++++|.|+|++|||.|+ |++.+++.+.+...
T Consensus 88 -~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~~ 166 (400)
T TIGR01880 88 -EHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKAL 166 (400)
T ss_pred -ccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccCC
Confidence 3564 5542 5899999999 5 788899999999998888889999999999999874 99999988766667
Q ss_pred cEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhcc---------ccC
Q 017084 240 EAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSR---------EAN 310 (377)
Q Consensus 240 d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~---------~~~ 310 (377)
|..+++++...+|.+...+..+. .|..+++|+++|+++|++.|. +.||+..|++++..|+++... ...
T Consensus 167 ~~~~~~d~g~~~~~~~~~i~~~~--kG~~~~~l~v~G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 243 (400)
T TIGR01880 167 NLGFALDEGLASPDDVYRVFYAE--RVPWWVVVTAPGNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSNPDLA 243 (400)
T ss_pred ceEEEEcCCCcccccccceeEEe--eEEEEEEEEEecCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcCcccc
Confidence 88888765333343322222222 278899999999999999864 479999999999888664210 111
Q ss_pred CCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhh
Q 017084 311 PLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFF 363 (377)
Q Consensus 311 ~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~ 363 (377)
.....+++++.++||.+.|+||++|++.+++|+.+.++.+++.++|++.+++.
T Consensus 244 ~~~~~t~~v~~i~gG~~~nvIP~~a~~~~diR~~p~~~~~~~~~~i~~~i~~~ 296 (400)
T TIGR01880 244 IGDVTSVNLTKLKGGVQSNVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCADA 296 (400)
T ss_pred ccccceeecceeccCCcCCcCCCccEEEEEEeeCCCCCHHHHHHHHHHHHhcc
Confidence 11236889999999999999999999999999999999999999999999864
No 23
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=100.00 E-value=3.2e-37 Score=304.58 Aligned_cols=250 Identities=19% Similarity=0.196 Sum_probs=199.3
Q ss_pred HHHHhHcCCCCCcchHHHHHHHHHHHHhCCCc-EEeecCCceEEEEecCCCCCeEEEecCcCcccCCCC--CCCCcc---
Q 017084 103 VRRTIHQNPELAFQEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEA--VEWEYK--- 176 (377)
Q Consensus 103 ~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~-v~~~~~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~--~~w~~~--- 176 (377)
++++|++|||+|++|.++++++.++|+++|++ +.....+.|++++++++++|+|+|+|||||||+++. ..|.++
T Consensus 1 ll~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~~~~~~~nvva~~~~~~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~ 80 (373)
T TIGR01900 1 LLQQIMDIFSPSDHEGPIADEIEAALNNLELEGLEVFRFGDNVLARTDFGKASRVILAGHIDTVPIADNFPPKWLEPGDS 80 (373)
T ss_pred ChHHHhCCCCCCchHHHHHHHHHHHHhhccccCceEEEECCEEEEecCCCCCCeEEEeCccccccCCCCChhhhccCccc
Confidence 36889999999999999999999999999654 222122459999986544689999999999998752 457543
Q ss_pred --------c-ccCCeEeeCCc-h--HHHHHHHHHHHHHHh--cCCCCCceEEEEEecCCCCc---CcHHHHHHcCC-CCC
Q 017084 177 --------S-KVAGKMHACGH-D--AHVAMLIGAAKILKS--REHLLKGTVILIFQPAEEAG---NGAKRMMADGA-LED 238 (377)
Q Consensus 177 --------p-~~~G~l~GrG~-~--g~~a~~l~a~~~L~~--~~~~l~~~I~lif~~dEE~g---~Ga~~li~~g~-~~~ 238 (377)
+ .++|++||||+ | +++++++.|++.|++ .+..++++|.|+|++|||.+ .|+..+++... +..
T Consensus 81 ~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~ 160 (373)
T TIGR01900 81 LIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLA 160 (373)
T ss_pred ccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHHHhCccccc
Confidence 2 46799999999 4 789999999999964 34578899999999999986 29999987532 225
Q ss_pred ccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccccC--C-CCCc
Q 017084 239 VEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREAN--P-LDSQ 315 (377)
Q Consensus 239 ~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~~~--~-~~~~ 315 (377)
.|++++.+|+.. .+ ..|. .|..+++|+++|+++|++.|+.|.|||..|++++.+|+++...... . ....
T Consensus 161 ~d~~iv~Ept~~----~i--~~g~--~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~ 232 (373)
T TIGR01900 161 ADFAIIGEPTGG----GI--EAGC--NGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVNIDGLDYRE 232 (373)
T ss_pred CCEEEEECCCCC----cc--cccc--eeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhcccccccCCcccc
Confidence 799988876531 12 2232 2788999999999999999999999999999999999876432211 1 1125
Q ss_pred EEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHH
Q 017084 316 VVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVL 360 (377)
Q Consensus 316 ~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~ 360 (377)
+++++.|+||.+.|+||++|++++++|+.|.++.+++.++|++.+
T Consensus 233 t~~v~~I~GG~~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~~~~ 277 (373)
T TIGR01900 233 GLNATFCEGGKANNVIPDEARMHLNFRFAPDKDLAEAKALMMGAD 277 (373)
T ss_pred eEEEEEEeCCCCCcccCCeEEEEEEEecCCCcCHHHHHHHHHhhh
Confidence 789999999999999999999999999999999999999997654
No 24
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=7.1e-37 Score=299.41 Aligned_cols=251 Identities=19% Similarity=0.258 Sum_probs=206.0
Q ss_pred hHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhC-CCcEEeecCCceEEEEecCCCCCeEEEecCcCcccCCCCCCCC
Q 017084 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRM-EIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWE 174 (377)
Q Consensus 96 ~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~l-G~~v~~~~~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~ 174 (377)
+.+++++++++|++|||+|++|.++++||.++|+++ |+++.. .+.|++++++++.+++|+|+||+||||+.+ +
T Consensus 5 ~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~i~l~~H~Dtvp~~~----~ 78 (352)
T PRK13007 5 LAADLAELTAALVDIPSVSGDEKALADAVEAALRALPHLEVIR--HGNSVVARTDLGRPSRVVLAGHLDTVPVAD----N 78 (352)
T ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceEEe--cCCeEEEEccCCCCCeEEEEccccccCCCC----C
Confidence 567899999999999999999999999999999996 887765 346899998654446899999999999864 3
Q ss_pred ccc-ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC---cHHHHHHcC-CCCCccEEEEEe
Q 017084 175 YKS-KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN---GAKRMMADG-ALEDVEAIFAVH 246 (377)
Q Consensus 175 ~~p-~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~---Ga~~li~~g-~~~~~d~~i~~~ 246 (377)
|++ .++|++||||+. +++++++.+++.|. +++++|.|+|++|||.|+ |++.+++.. .+..+|++++.+
T Consensus 79 ~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~e 154 (352)
T PRK13007 79 LPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEWLAGDFAILLE 154 (352)
T ss_pred CCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhcccccCCCEEEEec
Confidence 444 468999999994 88999999999883 478899999999999863 888888642 223589999988
Q ss_pred cCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccccCC---CCCcEEEEEEEe
Q 017084 247 VSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANP---LDSQVVSVTYFN 323 (377)
Q Consensus 247 ~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~~~~---~~~~~~~v~~i~ 323 (377)
|.. +.+. .+.. |..+++|+++|+++|+|.|+.|.||+..+++++.+++++..+.... ....+++++.++
T Consensus 155 p~~----~~i~--~~~~--G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 226 (352)
T PRK13007 155 PTD----GVIE--AGCQ--GTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVVVDGLTYREGLNAVRIS 226 (352)
T ss_pred CCC----CceE--eecc--ceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccccCCCCccceeEeEeEe
Confidence 643 1221 2222 7889999999999999999999999999999999998764322111 112468899999
Q ss_pred eCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhh
Q 017084 324 GGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFF 364 (377)
Q Consensus 324 gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a 364 (377)
||.+.|+||++|++++|+|++|.++.+++.++|++++.+.+
T Consensus 227 gG~~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~ 267 (352)
T PRK13007 227 GGVAGNVIPDECVVNVNYRFAPDRSLEEALAHVREVFDGFA 267 (352)
T ss_pred cCCcCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999987653
No 25
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.6e-36 Score=301.41 Aligned_cols=261 Identities=18% Similarity=0.232 Sum_probs=210.6
Q ss_pred cchHHHHHHHHHHhHcCCCCC---cchHHHHHHHHHHHHhCCCcEEeecC-----------CceEEEEecCCCCCeEEEe
Q 017084 94 PETVDWLKSVRRTIHQNPELA---FQEFETSRLLRAELDRMEIGYKYPLA-----------KTGIRAWVGTGGPPFVALR 159 (377)
Q Consensus 94 ~~~~~~li~~~~~lv~iPs~s---~~E~~~~~~l~~~L~~lG~~v~~~~~-----------~~~lia~~g~~~~~~I~l~ 159 (377)
|...+++++++++|++|||+| .+|.++++||+++|+++|++++.... +.|+++..+++ +|+|+|+
T Consensus 2 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ill~ 80 (394)
T PRK08651 2 EAMMFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARRGSG-NPHLHFN 80 (394)
T ss_pred chhHHHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEeCCC-CceEEEE
Confidence 456899999999999999998 66789999999999999999876321 13467766544 4899999
Q ss_pred cCcCcccCCCC--CCCCccc-ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHH
Q 017084 160 ADMDALPIQEA--VEWEYKS-KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMA 232 (377)
Q Consensus 160 aH~DvVP~~~~--~~w~~~p-~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~ 232 (377)
||+||||+++. +..||++ .++|++||||+. +++++++.+++.|++.+ +++|.|+|++|||+|+ |++++++
T Consensus 81 ~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~~G~~~~~~ 157 (394)
T PRK08651 81 GHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGGTGTGYLVE 157 (394)
T ss_pred eeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccchhHHHHHh
Confidence 99999998753 2335555 368999999983 88999999999998764 7999999999999986 9999999
Q ss_pred cCCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhcccc---
Q 017084 233 DGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREA--- 309 (377)
Q Consensus 233 ~g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~~--- 309 (377)
.+.+ ++|.++..++... +.+.. +. .|..+++|+++|+++|++.|+.|+|||..|++++..|++...+..
T Consensus 158 ~~~~-~~d~~i~~~~~~~---~~i~~--~~--~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~ 229 (394)
T PRK08651 158 EGKV-TPDYVIVGEPSGL---DNICI--GH--RGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSKY 229 (394)
T ss_pred ccCC-CCCEEEEecCCCC---CceEE--ec--ccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhccc
Confidence 8655 3788887765421 12222 22 277899999999999999999999999999999999976432110
Q ss_pred ----CCCCCcEEEEEE--EeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhhc
Q 017084 310 ----NPLDSQVVSVTY--FNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFFL 366 (377)
Q Consensus 310 ----~~~~~~~~~v~~--i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~~ 366 (377)
......+++++. ++||.+.|+||++|++.+++|+.+.++.+++.++|++++++.+..
T Consensus 230 ~~~~~~~~~~~~~ig~~~i~gG~~~nviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~ 292 (394)
T PRK08651 230 EYDDERGAKPTVTLGGPTVEGGTKTNIVPGYCAFSIDRRLIPEETAEEVRDELEALLDEVAPE 292 (394)
T ss_pred cccccccCCCceeecceeeeCCCCCCccCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhc
Confidence 112234677888 999999999999999999999999999999999999999887543
No 26
>PRK06446 hypothetical protein; Provisional
Probab=100.00 E-value=9.1e-37 Score=307.25 Aligned_cols=261 Identities=16% Similarity=0.215 Sum_probs=207.0
Q ss_pred HHHHHHHHHhHcCCCCCcc-h--HHHHHHHHHHHHhCCCcEEeec--CCceEEEEecCCCCCeEEEecCcCcccCCCCCC
Q 017084 98 DWLKSVRRTIHQNPELAFQ-E--FETSRLLRAELDRMEIGYKYPL--AKTGIRAWVGTGGPPFVALRADMDALPIQEAVE 172 (377)
Q Consensus 98 ~~li~~~~~lv~iPs~s~~-E--~~~~~~l~~~L~~lG~~v~~~~--~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~ 172 (377)
+++++++++|++|||++++ | .++++||+++|+++|++++... +++|++++++++.+|+|+|+|||||||+++.+.
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~~~~~lia~~~~~~~~~vll~gH~DvVp~~~~~~ 81 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTKGHPVVYGEINVGAKKTLLIYNHYDVQPVDPLSE 81 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCEEEEEecccCCCCCcccc
Confidence 4678999999999999964 3 6899999999999999987542 567899999654468999999999999977667
Q ss_pred CCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcC--CCCCccEE
Q 017084 173 WEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADG--ALEDVEAI 242 (377)
Q Consensus 173 w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g--~~~~~d~~ 242 (377)
|.++| +++|++||||+. +++++++.|++.|++.+ .++++|.|+|++|||.|+ |++++++.. .+ +.|++
T Consensus 82 W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~-~~d~v 159 (436)
T PRK06446 82 WKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGSPNLEDFIEKNKNKL-KADSV 159 (436)
T ss_pred ccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCCHhHHHHHHHHHHHh-CCCEE
Confidence 87665 468999999995 88999999998887654 578899999999999987 888887651 23 36887
Q ss_pred EEEecCCCCCcceeEeeccccccceeEEEEEEEe--eCCCCCCCCCCCcHHHHHHHHHHHHHhhhc--------------
Q 017084 243 FAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISG--KKGGAANPHRSVDPVLAASAAVISLQGLVS-------------- 306 (377)
Q Consensus 243 i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G--~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~-------------- 306 (377)
++ +++...+.+...+..+.+ |..+++++++| +++|+|.|+.|.|||..|++++.+|.+...
T Consensus 160 i~-E~~~~~~~~~~~i~~~~k--G~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 236 (436)
T PRK06446 160 IM-EGAGLDPKGRPQIVLGVK--GLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVREL 236 (436)
T ss_pred EE-CCCCccCCCCeEEEEecC--eEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCCCC
Confidence 64 554322333222233332 78899999998 999999999999999999999999965310
Q ss_pred --------cc-----------c---------------CCCCCcEEEEEEEeeC----cccceecCcEEEEEEEecCChhh
Q 017084 307 --------RE-----------A---------------NPLDSQVVSVTYFNGG----DHLDMIPDAVVIGGTLRAFSNTS 348 (377)
Q Consensus 307 --------~~-----------~---------------~~~~~~~~~v~~i~gG----~~~NvIP~~~~~~~~iR~~~~~~ 348 (377)
.. . ......+++++.++|| ...|+||++|++++|+|++|.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~t~nv~~i~~g~~~~~~~nvvP~~a~~~~d~R~~p~~~ 316 (436)
T PRK06446 237 TEEERELLKKYDIDVEELRKALGFKELKYSDREKIAEALLTEPTCNIDGFYSGYTGKGSKTIVPSRAFAKLDFRLVPNQD 316 (436)
T ss_pred CHHHHHHHHhCCCCHHHHHHHhCCccccCCCcccHHHHHHhCCcEEEeeeeccccCCCCCcEecCceEEEEEEEcCCCCC
Confidence 00 0 0012357889888887 46799999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 017084 349 FYQLLQRIEEVLFFF 363 (377)
Q Consensus 349 ~e~~~~~i~~~~~~~ 363 (377)
.+++.++|++++...
T Consensus 317 ~~~v~~~l~~~~~~~ 331 (436)
T PRK06446 317 PYKIFELLKKHLQKV 331 (436)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999998763
No 27
>PRK08201 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=306.56 Aligned_cols=273 Identities=17% Similarity=0.162 Sum_probs=214.5
Q ss_pred HHHHHhccCcchHHHHHHHHHHhHcCCCCCc------chHHHHHHHHHHHHhCCCc-EEee--cCCceEEEEe-cCCCCC
Q 017084 85 KEVMELARRPETVDWLKSVRRTIHQNPELAF------QEFETSRLLRAELDRMEIG-YKYP--LAKTGIRAWV-GTGGPP 154 (377)
Q Consensus 85 ~~~~~~~~~~~~~~~li~~~~~lv~iPs~s~------~E~~~~~~l~~~L~~lG~~-v~~~--~~~~~lia~~-g~~~~~ 154 (377)
+++.+++ ++..+++++++++|++|||+++ +|.++++||+++|+++|++ ++.. .++.|+++.+ +++++|
T Consensus 3 ~~~~~~~--~~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~~~~~ 80 (456)
T PRK08201 3 QQVEAYL--RERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHAPGKP 80 (456)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCCCCCC
Confidence 5667777 7788999999999999999985 4578999999999999997 4432 2457899987 433468
Q ss_pred eEEEecCcCcccCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-c
Q 017084 155 FVALRADMDALPIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-G 226 (377)
Q Consensus 155 ~I~l~aH~DvVP~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-G 226 (377)
+|+|+||+||||+++.+.|.++| .++|++||||+. +++++++.|++.|++.+..++++|.|+|++|||.|+ |
T Consensus 81 ~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g 160 (456)
T PRK08201 81 TVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGSPN 160 (456)
T ss_pred EEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCCcc
Confidence 99999999999997766786665 468999999994 889999999999987666788899999999999987 8
Q ss_pred HHHHHHcC--CCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCC--CCCCCCC-CCcHHHHHHHHHHHH
Q 017084 227 AKRMMADG--ALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKG--GAANPHR-SVDPVLAASAAVISL 301 (377)
Q Consensus 227 a~~li~~g--~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~--Hs~~p~~-g~nAI~~~~~~i~~l 301 (377)
+..+++.. .+ ..|++++.+++...+.. ..+..+.+ |..+++|+++|+++ ||+.|.. +.|||..|+++|..|
T Consensus 161 ~~~~l~~~~~~~-~~d~~ii~e~~~~~~~~-~~i~~g~k--G~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l 236 (456)
T PRK08201 161 LDSFVEEEKDKL-AADVVLISDTTLLGPGK-PAICYGLR--GLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASL 236 (456)
T ss_pred HHHHHHhhHHhc-cCCEEEEeCCCcCCCCC-EEEEEecC--CeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhc
Confidence 88888652 12 36899988875432211 11222332 88899999999998 9987554 479999999999998
Q ss_pred Hhhhccc-----------------------------------cCC-C------------CCcEEEEEEEeeCc----ccc
Q 017084 302 QGLVSRE-----------------------------------ANP-L------------DSQVVSVTYFNGGD----HLD 329 (377)
Q Consensus 302 ~~~~~~~-----------------------------------~~~-~------------~~~~~~v~~i~gG~----~~N 329 (377)
+++..+. ..+ + ...+++++.++||. ..|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~~~~~~N 316 (456)
T PRK08201 237 HDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGYTALERTWARPTLELNGVYGGFQGEGTKT 316 (456)
T ss_pred CCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcchHHHHHHHhCCcEEEEeeecCCCCCCCce
Confidence 6531100 000 0 12367888888874 379
Q ss_pred eecCcEEEEEEEecCChhhHHHHHHHHHHHHhhh
Q 017084 330 MIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFF 363 (377)
Q Consensus 330 vIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~ 363 (377)
+||++|++.+|+|+.|.++.+++.++|++.++..
T Consensus 317 vVP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~ 350 (456)
T PRK08201 317 VIPAEAHAKITCRLVPDQDPQEILDLIEAHLQAH 350 (456)
T ss_pred EECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998763
No 28
>PRK09133 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=308.83 Aligned_cols=262 Identities=16% Similarity=0.178 Sum_probs=208.6
Q ss_pred chHHHHHHHHHHhHcCCCCC--cchHHHHHHHHHHHHhCCCcEE---ee---cCCceEEEEecC-CCCCeEEEecCcCcc
Q 017084 95 ETVDWLKSVRRTIHQNPELA--FQEFETSRLLRAELDRMEIGYK---YP---LAKTGIRAWVGT-GGPPFVALRADMDAL 165 (377)
Q Consensus 95 ~~~~~li~~~~~lv~iPs~s--~~E~~~~~~l~~~L~~lG~~v~---~~---~~~~~lia~~g~-~~~~~I~l~aH~DvV 165 (377)
..++++++++++|++|||++ ++|.++++||.++|+++|++++ .. .++.|+++.+++ +++++|+|+||||||
T Consensus 34 ~~~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~~~~lll~~H~DtV 113 (472)
T PRK09133 34 ADQQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDPKKPILLLAHMDVV 113 (472)
T ss_pred hhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCCCCcEEEEeecccC
Confidence 34778999999999999998 6788999999999999999864 21 246899999854 445899999999999
Q ss_pred cCCCCCCCCccc----ccCCeEeeCCc-h--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCC-CcC-cHHHHHHcCC-
Q 017084 166 PIQEAVEWEYKS----KVAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEE-AGN-GAKRMMADGA- 235 (377)
Q Consensus 166 P~~~~~~w~~~p----~~~G~l~GrG~-~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE-~g~-Ga~~li~~g~- 235 (377)
|+++ +.|.++| +++|++||||+ | +++++++.+++.|++.+..++++|.|+|++||| .|+ |++.+++...
T Consensus 114 p~~~-~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~ 192 (472)
T PRK09133 114 EAKR-EDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPMNGVAWLAENHRD 192 (472)
T ss_pred CCCh-hcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCccchHHHHHHHHhh
Confidence 9864 3576665 35799999999 4 889999999999998888889999999999999 564 9999987532
Q ss_pred CCCccEEEEEecCC------CCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccc-
Q 017084 236 LEDVEAIFAVHVSH------EHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE- 308 (377)
Q Consensus 236 ~~~~d~~i~~~~~~------~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~- 308 (377)
.-+.|+++. ++.. ++|... .+..|.+ |..+++|+++|+++|+|.|+ +.|||..++++|..|+++..+.
T Consensus 193 ~~~~~~~i~-e~~~~~~~~~gept~~-~i~~g~k--G~~~~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~ 267 (472)
T PRK09133 193 LIDAEFALN-EGGGGTLDEDGKPVLL-TVQAGEK--TYADFRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVM 267 (472)
T ss_pred ccCeEEEEE-CCCccccCCCCCceEE-Eeeeecc--eeEEEEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCc
Confidence 113677777 6543 233211 1222322 77899999999999999996 5899999999999987531000
Q ss_pred ---------------------------------------------cCCCCCcEEEEEEEeeCcccceecCcEEEEEEEec
Q 017084 309 ---------------------------------------------ANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRA 343 (377)
Q Consensus 309 ---------------------------------------------~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~ 343 (377)
.......+++++.|+||.+.|+||++|++.+|+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gG~~~NvVP~~a~~~lDiR~ 347 (472)
T PRK09133 268 LNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLEGGHAENALPQRATANVNCRI 347 (472)
T ss_pred cCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEecCCcCccCCCceEEEEEEEe
Confidence 00012357889999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhh
Q 017084 344 FSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 344 ~~~~~~e~~~~~i~~~~~~ 362 (377)
++.++.+++.++|++.++.
T Consensus 348 ~p~~~~e~v~~~I~~~i~~ 366 (472)
T PRK09133 348 FPGDTIEAVRATLKQVVAD 366 (472)
T ss_pred CCchhHHHHHHHHHHHhcC
Confidence 9999999999999999865
No 29
>PRK07907 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=300.36 Aligned_cols=271 Identities=14% Similarity=0.153 Sum_probs=212.9
Q ss_pred HHHHHhccCcchHHHHHHHHHHhHcCCCCCcc------hHHHHHHHHHHHHhCCC-cEEee--cCCceEEEEecCC-CCC
Q 017084 85 KEVMELARRPETVDWLKSVRRTIHQNPELAFQ------EFETSRLLRAELDRMEI-GYKYP--LAKTGIRAWVGTG-GPP 154 (377)
Q Consensus 85 ~~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~------E~~~~~~l~~~L~~lG~-~v~~~--~~~~~lia~~g~~-~~~ 154 (377)
+++.+++ ++.++++++++++|++|||+|++ |.++++||.++|+++|+ +++.. .+++|++++++++ ++|
T Consensus 7 ~~~~~~i--~~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~nl~a~~~~~~~~~ 84 (449)
T PRK07907 7 DDLRARV--AELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVSADGAPAVIGTRPAPPGAP 84 (449)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEecCCCCEEEEEecCCCCCC
Confidence 4567778 77899999999999999999964 67899999999999998 67653 3568999998543 468
Q ss_pred eEEEecCcCcccCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-c
Q 017084 155 FVALRADMDALPIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-G 226 (377)
Q Consensus 155 ~I~l~aH~DvVP~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-G 226 (377)
+|+|+||+||||+++...|.++| .++|++||||+. +++++++.|+++| +..++++|.|+|++|||+|+ |
T Consensus 85 ~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~~g 161 (449)
T PRK07907 85 TVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGSPS 161 (449)
T ss_pred EEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCCcc
Confidence 99999999999998766787666 358999999994 8888999999888 34577899999999999986 9
Q ss_pred HHHHHHcCC-CCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEE--eeCCCCCC-CCCCCcHHHHHHHHHHHHH
Q 017084 227 AKRMMADGA-LEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVIS--GKKGGAAN-PHRSVDPVLAASAAVISLQ 302 (377)
Q Consensus 227 a~~li~~g~-~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~--G~~~Hs~~-p~~g~nAI~~~~~~i~~l~ 302 (377)
++++++... ..+.|++++.+++... .+...+..+.+ |..+++++++ |+++|+|. +..+.||+..+++++.+|+
T Consensus 162 ~~~~l~~~~~~~~~d~~iv~E~~~~~-~~~p~i~~~~k--G~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l~ 238 (449)
T PRK07907 162 LERLLAEHPDLLAADVIVIADSGNWS-VGVPALTTSLR--GNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATLH 238 (449)
T ss_pred HHHHHHhchHhhcCCEEEEecCCcCC-CCCeEEEEecC--CcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhhC
Confidence 999987521 1247899988875321 11111222322 7788889988 89999997 4668899999999999997
Q ss_pred hhhccc-------cCC---------------------------------CCCcEEEEEEEee---CcccceecCcEEEEE
Q 017084 303 GLVSRE-------ANP---------------------------------LDSQVVSVTYFNG---GDHLDMIPDAVVIGG 339 (377)
Q Consensus 303 ~~~~~~-------~~~---------------------------------~~~~~~~v~~i~g---G~~~NvIP~~~~~~~ 339 (377)
+...+. ..+ ....+++++.|++ |.+.|+||++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~~g~~~nvIP~~a~~~~ 318 (449)
T PRK07907 239 DEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPPVAGASNALPPSARARL 318 (449)
T ss_pred CCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCCCCCCCCEecCceEEEE
Confidence 642110 000 0134677877875 468899999999999
Q ss_pred EEecCChhhHHHHHHHHHHHHhhh
Q 017084 340 TLRAFSNTSFYQLLQRIEEVLFFF 363 (377)
Q Consensus 340 ~iR~~~~~~~e~~~~~i~~~~~~~ 363 (377)
|+|+.|.++.+++.++|++.++..
T Consensus 319 diR~~p~~~~e~v~~~l~~~l~~~ 342 (449)
T PRK07907 319 SLRVAPGQDAAEAQDALVAHLEAH 342 (449)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998764
No 30
>PRK07473 carboxypeptidase; Provisional
Probab=100.00 E-value=2.4e-35 Score=291.41 Aligned_cols=254 Identities=12% Similarity=0.138 Sum_probs=206.9
Q ss_pred cchHHHHHHHHHHhHcCCCCCcchH---HHHHHHHHHHHhCCCcEEeecC----CceEEEEecC-C-CCCeEEEecCcCc
Q 017084 94 PETVDWLKSVRRTIHQNPELAFQEF---ETSRLLRAELDRMEIGYKYPLA----KTGIRAWVGT-G-GPPFVALRADMDA 164 (377)
Q Consensus 94 ~~~~~~li~~~~~lv~iPs~s~~E~---~~~~~l~~~L~~lG~~v~~~~~----~~~lia~~g~-~-~~~~I~l~aH~Dv 164 (377)
+...+++++++++|++|||++++|. ++++|+.++|+++|++++.... .+++++.+++ + ++|+|+|+|||||
T Consensus 7 ~~~~~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH~Dt 86 (376)
T PRK07473 7 PFDSEAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGHMDT 86 (376)
T ss_pred CcCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEecCCC
Confidence 3447889999999999999999886 6778999999999999886432 2478898853 2 3689999999999
Q ss_pred ccCCC-CCCCCcccccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCc
Q 017084 165 LPIQE-AVEWEYKSKVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDV 239 (377)
Q Consensus 165 VP~~~-~~~w~~~p~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~ 239 (377)
||+.. .+.+||. .++|++||||+. +++++++.|+++|++.+..++++|.|+|++|||.|+ |++.+++.+.. ..
T Consensus 87 V~~~~~~~~~p~~-~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~g~~~~~~~~~~-~~ 164 (376)
T PRK07473 87 VHPVGTLEKLPWR-REGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGTPSTRDLIEAEAA-RN 164 (376)
T ss_pred CCCCCCccCCCeE-EECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCCccHHHHHHHhhc-cC
Confidence 97533 2334554 578999999974 889999999999998877778899999999999987 99999986433 47
Q ss_pred cEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCC-CCCCCCcHHHHHHHHHHHHHhhhccccCCCCCcEEE
Q 017084 240 EAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-NPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVS 318 (377)
Q Consensus 240 d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~-~p~~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~ 318 (377)
|++++.+|+.. .+.+.. +.. |..+++|+++|+++|++ .|+.|+|||..|++++.+|+++.. ...+++
T Consensus 165 d~~iv~ep~~~--~~~v~~--~~~--G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~------~~~~~~ 232 (376)
T PRK07473 165 KYVLVPEPGRP--DNGVVT--GRY--AIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT------EDCTFS 232 (376)
T ss_pred CEEEEeCCCCC--CCCEEE--ECe--eeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC------CCceEe
Confidence 99999887531 112221 222 78899999999999997 699999999999999999988742 135789
Q ss_pred EEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHh
Q 017084 319 VTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLF 361 (377)
Q Consensus 319 v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~ 361 (377)
++.|+||.+.|+||++|++.+++|....++.+++.+++.+.+.
T Consensus 233 vg~i~gg~~~n~VP~~~~~~~d~r~~~~~~~~~~~~~i~~~~~ 275 (376)
T PRK07473 233 VGIVHGGQWVNCVATTCTGEALSMAKRQADLDRGVARMLALSG 275 (376)
T ss_pred EeeEEcCCCCcCCCCceEEEEEEEeCCHhHHHHHHHHHHHhhC
Confidence 9999999999999999999999999888888888877766654
No 31
>PRK08652 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=4.7e-35 Score=285.75 Aligned_cols=243 Identities=16% Similarity=0.139 Sum_probs=197.6
Q ss_pred HHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecC--CceEEEEecCCCCCeEEEecCcCcccCCCCCCCCc
Q 017084 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA--KTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEY 175 (377)
Q Consensus 98 ~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~--~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~~ 175 (377)
+++++++++|++|||+|++|.++++||.++|+++|++++.... ..|+++ + ++|+|+|+|||||||.+.. ++
T Consensus 2 ~~~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~--~--~~~~i~l~~H~D~vp~~~~---~~ 74 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYDVHIESDGEVINIVV--N--SKAELFVEVHYDTVPVRAE---FF 74 (347)
T ss_pred hhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCEEEEEecCceeEEEc--C--CCCEEEEEccccccCCCCC---CE
Confidence 4688999999999999999999999999999999999876432 245554 2 3589999999999997421 11
Q ss_pred ccccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecCCCC
Q 017084 176 KSKVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEH 251 (377)
Q Consensus 176 ~p~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~~~~ 251 (377)
.++|++||||+. ++++++++|++.|.+. ..+++|.|+|++|||.|+ |++.+++. . ..|++++.+|+.
T Consensus 75 --~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE~g~~G~~~~~~~--~-~~d~~i~~ep~~-- 145 (347)
T PRK08652 75 --VDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEEEGGRGSALFAER--Y-RPKMAIVLEPTD-- 145 (347)
T ss_pred --EECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcccCChhHHHHHHh--c-CCCEEEEecCCC--
Confidence 467999999995 8899999999999854 246799999999999886 99999875 2 358888887642
Q ss_pred CcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeCccccee
Q 017084 252 PTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMI 331 (377)
Q Consensus 252 p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~NvI 331 (377)
+.+.. +. .|..+++|+++|+++|++.|+.|.|||..+++++..|+++.........+ .++++.++||...|+|
T Consensus 146 --~~i~~--~~--~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~-~~~~~~i~gg~~~nvi 218 (347)
T PRK08652 146 --LKVAI--AH--YGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKALGKYFDP-HIGIQEIIGGSPEYSI 218 (347)
T ss_pred --Cceee--ec--ccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhhhcccCC-CCcceeeecCCCCCcc
Confidence 12222 22 27889999999999999999999999999999999998764322111222 3566778999999999
Q ss_pred cCcEEEEEEEecCChhhHHHHHHHHHHHHhhh
Q 017084 332 PDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFF 363 (377)
Q Consensus 332 P~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~ 363 (377)
|++|++++++|+++.++.+++.++|++.+++.
T Consensus 219 P~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~ 250 (347)
T PRK08652 219 PALCRLRLDARIPPEVEVEDVLDEIDPILDEY 250 (347)
T ss_pred CCcEEEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999764
No 32
>PRK08262 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=302.41 Aligned_cols=262 Identities=15% Similarity=0.189 Sum_probs=204.7
Q ss_pred chHHHHHHHHHHhHcCCCCCcchH---------HHHHHHHHHHHhCCCcEEee-cCCceEEEEe-cCCCC-CeEEEecCc
Q 017084 95 ETVDWLKSVRRTIHQNPELAFQEF---------ETSRLLRAELDRMEIGYKYP-LAKTGIRAWV-GTGGP-PFVALRADM 162 (377)
Q Consensus 95 ~~~~~li~~~~~lv~iPs~s~~E~---------~~~~~l~~~L~~lG~~v~~~-~~~~~lia~~-g~~~~-~~I~l~aH~ 162 (377)
...+++++++++|++|||+|++|. ++++||+++|+.+|++++.. .++.|+++.+ |++++ |+|+|+||+
T Consensus 41 ~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~~~~vv~~~~g~~~~~~~ill~gH~ 120 (486)
T PRK08262 41 VDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGGHSLLYTWKGSDPSLKPIVLMAHQ 120 (486)
T ss_pred CCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEECCccEEEEEECCCCCCCeEEEECcc
Confidence 347779999999999999998763 48999999999999987653 2346788877 54433 899999999
Q ss_pred CcccCCCC--CCCCc---cc-ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHH
Q 017084 163 DALPIQEA--VEWEY---KS-KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMA 232 (377)
Q Consensus 163 DvVP~~~~--~~w~~---~p-~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~ 232 (377)
||||+++. ..|.+ .+ .++|++||||+. |++++++.|++.|++++.+++++|.|+|++|||+|+ |++.+++
T Consensus 121 DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~ 200 (486)
T PRK08262 121 DVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAE 200 (486)
T ss_pred cccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHH
Confidence 99998754 46854 44 468999999973 899999999999998888899999999999999886 9988876
Q ss_pred c----CCCCCccEEE------EEec--CCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHH
Q 017084 233 D----GALEDVEAIF------AVHV--SHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVIS 300 (377)
Q Consensus 233 ~----g~~~~~d~~i------~~~~--~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~ 300 (377)
. +. ..|+++ ..++ ...+|.+.+... ..|..+++|+++|+++||+.|+. .||+..++++|.+
T Consensus 201 ~l~~~~~--~~~~~~~~~~~i~~~~~~~~~~p~~~i~~~----~kG~~~~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~ 273 (486)
T PRK08262 201 LLKERGV--RLAFVLDEGGAITEGVLPGVKKPVALIGVA----EKGYATLELTARATGGHSSMPPR-QTAIGRLARALTR 273 (486)
T ss_pred HHHHhcC--CEEEEEeCCceecccccCCCCceEEeeEEe----eeeeEEEEEEEecCCCCCCCCCC-CCHHHHHHHHHHH
Confidence 3 22 234432 1111 113444443322 12788999999999999999988 9999999999999
Q ss_pred HHhhhcc----------------c----------------------------cCCCCCcEEEEEEEeeCcccceecCcEE
Q 017084 301 LQGLVSR----------------E----------------------------ANPLDSQVVSVTYFNGGDHLDMIPDAVV 336 (377)
Q Consensus 301 l~~~~~~----------------~----------------------------~~~~~~~~~~v~~i~gG~~~NvIP~~~~ 336 (377)
|++...+ . .......+++++.|+||...|+||++|+
T Consensus 274 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG~~~NvIP~~a~ 353 (486)
T PRK08262 274 LEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGSPKDNVLPQRAT 353 (486)
T ss_pred HhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecCCccccCCCccE
Confidence 9763100 0 0012245789999999999999999999
Q ss_pred EEEEEecCChhhHHHHHHHHHHHHhhh
Q 017084 337 IGGTLRAFSNTSFYQLLQRIEEVLFFF 363 (377)
Q Consensus 337 ~~~~iR~~~~~~~e~~~~~i~~~~~~~ 363 (377)
+++++|+.+.++.+++.++|++.++..
T Consensus 354 ~~~diR~~p~~~~~~i~~~i~~~~~~~ 380 (486)
T PRK08262 354 ATVNFRILPGDSVESVLAHVRRAVADD 380 (486)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHhccC
Confidence 999999999999999999999998763
No 33
>PRK09104 hypothetical protein; Validated
Probab=100.00 E-value=5.5e-35 Score=296.55 Aligned_cols=272 Identities=14% Similarity=0.132 Sum_probs=215.0
Q ss_pred HHHHHhccCcchHHHHHHHHHHhHcCCCCCcch------HHHHHHHHHHHHhCCCcEEee--cCCceEEEEecC-C-CCC
Q 017084 85 KEVMELARRPETVDWLKSVRRTIHQNPELAFQE------FETSRLLRAELDRMEIGYKYP--LAKTGIRAWVGT-G-GPP 154 (377)
Q Consensus 85 ~~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~E------~~~~~~l~~~L~~lG~~v~~~--~~~~~lia~~g~-~-~~~ 154 (377)
+++.+++ +..++++++++++|++|||+|+++ .+++++|+++|+++|++++.. .+++|+++.+++ + .+|
T Consensus 6 ~~~~~~~--~~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~l~a~~~g~~~~~~ 83 (464)
T PRK09104 6 DPVLDHI--DANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTPGHPMVVAHHEGPTGDAP 83 (464)
T ss_pred HHHHHHH--HHhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCCC
Confidence 4567778 778999999999999999999754 689999999999999998753 346799999953 2 369
Q ss_pred eEEEecCcCcccCCCCCCCCcccc----cCC-----eEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCC
Q 017084 155 FVALRADMDALPIQEAVEWEYKSK----VAG-----KMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEE 222 (377)
Q Consensus 155 ~I~l~aH~DvVP~~~~~~w~~~p~----~~G-----~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE 222 (377)
+|+|+||+||||+++.+.|.++|. ++| ++||||+. |++++++.|++.|++.+.+++++|.|+|++|||
T Consensus 84 ~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE 163 (464)
T PRK09104 84 HVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEEE 163 (464)
T ss_pred EEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccc
Confidence 999999999999987677876663 233 59999984 889999999999998777788999999999999
Q ss_pred CcC-cHHHHHHcCC-CCCccEEEEEecCCCCC-cceeEeeccccccceeEEEEEEEe--eCCCCCC-CCCCCcHHHHHHH
Q 017084 223 AGN-GAKRMMADGA-LEDVEAIFAVHVSHEHP-TGVIGSRPGPLLAGCGFFHAVISG--KKGGAAN-PHRSVDPVLAASA 296 (377)
Q Consensus 223 ~g~-Ga~~li~~g~-~~~~d~~i~~~~~~~~p-~g~i~~~~g~~~ag~~~~~I~v~G--~~~Hs~~-p~~g~nAI~~~~~ 296 (377)
+|+ |+.+++.... ....|++++.++....+ ...+. .+.+ |..+++|+++| +++||+. |+.|.||+..|++
T Consensus 164 ~g~~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~~~~i~--~~~k--G~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~ 239 (464)
T PRK09104 164 SGSPSLVPFLEANAEELKADVALVCDTGMWDRETPAIT--TSLR--GLVGEEVTITAADRDLHSGLFGGAAANPIRVLTR 239 (464)
T ss_pred cCCccHHHHHHhhHHhcCCCEEEEeCCCCCCCCCeEEE--eecC--CeEEEEEEEEeCCCCccccccCCccCCHHHHHHH
Confidence 986 8888776421 11479999888642111 11222 2322 78899999999 6899996 7889999999999
Q ss_pred HHHHHHhhhccc----------------------c--------------CC------------CCCcEEEEEEEeeCc--
Q 017084 297 AVISLQGLVSRE----------------------A--------------NP------------LDSQVVSVTYFNGGD-- 326 (377)
Q Consensus 297 ~i~~l~~~~~~~----------------------~--------------~~------------~~~~~~~v~~i~gG~-- 326 (377)
++.+|++..... . .+ ....+++++.++||.
T Consensus 240 ~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~~ 319 (464)
T PRK09104 240 ILAGLHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGRSVLEQIWSRPTCEINGIWGGYTG 319 (464)
T ss_pred HHHhccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccHHHHHHHhhCCeEEEeccccCCCC
Confidence 999986531100 0 00 012468888899885
Q ss_pred --ccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 327 --HLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 327 --~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
+.|+||++|++++|+|++|.++.+++.++|++.+..
T Consensus 320 ~~~~nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~ 357 (464)
T PRK09104 320 EGFKTVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRA 357 (464)
T ss_pred CCCccEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999875
No 34
>PRK08737 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=7.1e-35 Score=286.85 Aligned_cols=244 Identities=16% Similarity=0.150 Sum_probs=194.1
Q ss_pred chHHHHHHHHHHhHcCCCCC----cchHHHHHHHHHHHHhCCCcEEeec---CCceEEEEecCCCCCeEEEecCcCcccC
Q 017084 95 ETVDWLKSVRRTIHQNPELA----FQEFETSRLLRAELDRMEIGYKYPL---AKTGIRAWVGTGGPPFVALRADMDALPI 167 (377)
Q Consensus 95 ~~~~~li~~~~~lv~iPs~s----~~E~~~~~~l~~~L~~lG~~v~~~~---~~~~lia~~g~~~~~~I~l~aH~DvVP~ 167 (377)
+..+++++++++|++|||.+ ++|.++++|+.++|+ |++++... ++.|+++..| +|+|+|+||+||||+
T Consensus 3 ~~~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~g---~~~lll~gH~DtVp~ 77 (364)
T PRK08737 3 DLLESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVRG---TPKYLFNVHLDTVPD 77 (364)
T ss_pred ccHHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEcC---CCeEEEEeeeCCCCC
Confidence 34567999999999999985 357899999999997 89887543 3468888643 378999999999998
Q ss_pred CCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC--cHHHHHHcCCCCC
Q 017084 168 QEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GAKRMMADGALED 238 (377)
Q Consensus 168 ~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~--Ga~~li~~g~~~~ 238 (377)
++ .|.++| .++|++||||+. +++++++.|+.. +.++|.|+|++|||.|+ |++.+++.+. +
T Consensus 78 ~~--~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~--~ 146 (364)
T PRK08737 78 SP--HWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAFLFSSDEEANDPRCVAAFLARGI--P 146 (364)
T ss_pred CC--CCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCEEEEEEcccccCchhhHHHHHHhCC--C
Confidence 64 576655 468999999995 677777777653 35789999999999885 8889988764 5
Q ss_pred ccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCC-CCCCcHHHHHHHHHHHHHhhhc-c---ccCCCC
Q 017084 239 VEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANP-HRSVDPVLAASAAVISLQGLVS-R---EANPLD 313 (377)
Q Consensus 239 ~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p-~~g~nAI~~~~~~i~~l~~~~~-~---~~~~~~ 313 (377)
.|++++.+|+.. .+ ..+.+ |..+++|+++|+++|+|.| +.|+|||..|+++|.++.+... + ......
T Consensus 147 ~~~~iv~Ept~~----~~--~~~~k--G~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~~~~~~~~~~ 218 (364)
T PRK08737 147 YEAVLVAEPTMS----EA--VLAHR--GISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESLAHARFGGLT 218 (364)
T ss_pred CCEEEEcCCCCc----ee--EEecc--eeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhhhhhccCCCC
Confidence 799998776531 11 12222 7889999999999999998 5899999999999987654321 1 112223
Q ss_pred CcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 314 SQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 314 ~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
..+++++.|+||.+.|+||++|++++++|+.|.++.+++.++|++.++.
T Consensus 219 ~~t~~vg~i~GG~~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~~~~ 267 (364)
T PRK08737 219 GLRFNIGRVEGGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGFAEP 267 (364)
T ss_pred CCceEEeeEecCCCCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999877764
No 35
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=100.00 E-value=8.8e-35 Score=285.64 Aligned_cols=248 Identities=19% Similarity=0.185 Sum_probs=203.3
Q ss_pred HHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeec------CCceEEEEecC-CCCCeEEEecCcCcccCCCCCC
Q 017084 100 LKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL------AKTGIRAWVGT-GGPPFVALRADMDALPIQEAVE 172 (377)
Q Consensus 100 li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~------~~~~lia~~g~-~~~~~I~l~aH~DvVP~~~~~~ 172 (377)
+++++++|++|||++++|.++++||+++|+++|++++... +++|+++.+++ +++|+|+|+||+||||+++
T Consensus 2 ~~~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~l~~H~D~V~~~~--- 78 (361)
T TIGR01883 2 LKKYFLELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVKFDTIFFCGHMDTVPPGA--- 78 (361)
T ss_pred hHHHHHHHeecCCCCCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCCCCcEEEEeeccccCCCC---
Confidence 6788999999999999999999999999999999987642 36899999954 3458999999999999753
Q ss_pred CCccc-ccCCeEeeCCc-----h--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEE
Q 017084 173 WEYKS-KVAGKMHACGH-----D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIF 243 (377)
Q Consensus 173 w~~~p-~~~G~l~GrG~-----~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i 243 (377)
++.+ +++|++||||+ | ++++++|++++.|++.+ .++++|.|+|++|||.|+ |++.+.+.+. ..++++
T Consensus 79 -~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~~G~~~~~~~~~--~~~~~~ 154 (361)
T TIGR01883 79 -GPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGLIGMRLFDESKI--TAAYGY 154 (361)
T ss_pred -CCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCchhHhHhChhhc--CcceeE
Confidence 2344 46789999997 6 78999999999998765 578899999999999886 9998876532 357777
Q ss_pred EEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCC-CCCCCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEE
Q 017084 244 AVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-NPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYF 322 (377)
Q Consensus 244 ~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~-~p~~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i 322 (377)
..++.. +.+.+.... .|..+++|+++|+++|++ .|+.|+||+..+++++.+|+... .. ...+++++.+
T Consensus 155 ~~~~~~--~~~~i~~~~----~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~---~~--~~~~~~i~~i 223 (361)
T TIGR01883 155 CLDAPG--EVGNIQLAA----PTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGR---ID--EETTANIGSF 223 (361)
T ss_pred EEeCCC--CcceEEecC----CceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccccC---CC--Ccccccccee
Confidence 766432 223343322 267899999999999986 69999999999999999886531 11 1256788999
Q ss_pred eeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 323 NGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 323 ~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
+||...|+||++|++.+++|..+..+.+.+.++|++.++..+.
T Consensus 224 ~gG~~~nvVP~~~~~~~diR~~~~~~~~~~~~~i~~~i~~~~~ 266 (361)
T TIGR01883 224 SGGVNTNIVQDEQLIVAEARSLSFRKAEAQVQTMRERFEQAAE 266 (361)
T ss_pred ecCCccCccCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987643
No 36
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=100.00 E-value=1.3e-34 Score=283.25 Aligned_cols=238 Identities=14% Similarity=0.133 Sum_probs=195.9
Q ss_pred chHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCCCCCeEEEecCcCcccCCCCCCCC
Q 017084 95 ETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWE 174 (377)
Q Consensus 95 ~~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~ 174 (377)
+..+++++++++|++|||++++|.++++||+++|+++|+++++.. ..|++. .| .++|+|+||+||||. |
T Consensus 7 ~~~~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~-~~~~~~-~g---~~~lll~gH~DtVp~-----~- 75 (346)
T PRK00466 7 LVKQKAKELLLDLLSIYTPSGNETNATKFFEKISNELNLKLEILP-DSNSFI-LG---EGDILLASHVDTVPG-----Y- 75 (346)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEec-CCCcEe-cC---CCeEEEEeccccCCC-----C-
Confidence 446789999999999999999999999999999999999988653 235443 22 368999999999994 2
Q ss_pred ccc-ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecCC
Q 017084 175 YKS-KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSH 249 (377)
Q Consensus 175 ~~p-~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~~ 249 (377)
|.+ .++|++||||+. +++++++.|+++|++.+ .++.|+|++|||+|+ |++++++.+. ++|++++.+|+.
T Consensus 76 ~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~~G~~~l~~~~~--~~d~~i~~ep~~ 149 (346)
T PRK00466 76 IEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTSIGAKELVSKGF--NFKHIIVGEPSN 149 (346)
T ss_pred CCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCCccHHHHHhcCC--CCCEEEEcCCCC
Confidence 444 578999999984 78889999999998765 358999999999886 9999999863 479988876542
Q ss_pred CCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeCcccc
Q 017084 250 EHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLD 329 (377)
Q Consensus 250 ~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~N 329 (377)
. ..+ ..+. .|..+++|+++|+++|+|.|+ .|||..|++++..+.+... .....+++++.++||.+.|
T Consensus 150 ~---~~i--~~~~--kG~~~~~i~v~G~~~Has~p~--~nAi~~~~~~l~~l~~~~~----~~~~~t~~~~~i~gG~~~N 216 (346)
T PRK00466 150 G---TDI--VVEY--RGSIQLDIMCEGTPEHSSSAK--SNLIVDISKKIIEVYKQPE----NYDKPSIVPTIIRAGESYN 216 (346)
T ss_pred C---Cce--EEEe--eEEEEEEEEEEeeccccCCCC--cCHHHHHHHHHHHHHhccc----cCCCCcceeeEEecCCcCc
Confidence 1 112 2222 278899999999999999885 4999999999998876421 2234578899999999999
Q ss_pred eecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 330 MIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 330 vIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
+||++|++.+|+|+.+.++.+++.++|++.+.+
T Consensus 217 vvP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~ 249 (346)
T PRK00466 217 VTPAKLYLHFDVRYAINNKRDDLISEIKDKFQE 249 (346)
T ss_pred ccCCceEEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998875
No 37
>PRK07906 hypothetical protein; Provisional
Probab=100.00 E-value=8.1e-35 Score=292.23 Aligned_cols=255 Identities=15% Similarity=0.199 Sum_probs=197.0
Q ss_pred HHHHHHhHcCCCCC------cchHHHHHHHHHHHHhCCCcEEeec---CCceEEEEecC-CC-CCeEEEecCcCcccCCC
Q 017084 101 KSVRRTIHQNPELA------FQEFETSRLLRAELDRMEIGYKYPL---AKTGIRAWVGT-GG-PPFVALRADMDALPIQE 169 (377)
Q Consensus 101 i~~~~~lv~iPs~s------~~E~~~~~~l~~~L~~lG~~v~~~~---~~~~lia~~g~-~~-~~~I~l~aH~DvVP~~~ 169 (377)
++++++|++|||++ .+|.++++||.++|+++|++++... +..|+++++++ ++ .|+|+|+||+||||+++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~ 81 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEA 81 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCc
Confidence 67899999999998 6789999999999999999987642 45799999843 33 48999999999999854
Q ss_pred CCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC--cHHHHHHcC--CCCC
Q 017084 170 AVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GAKRMMADG--ALED 238 (377)
Q Consensus 170 ~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~--Ga~~li~~g--~~~~ 238 (377)
+.|.++| .++|++||||+. +++++++.|+++|++.+..++++|.|+|++|||+|+ |++.+++.. .++.
T Consensus 82 -~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~~~~ 160 (426)
T PRK07906 82 -ADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEG 160 (426)
T ss_pred -ccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHhccc
Confidence 4687666 368999999994 889999999999999888899999999999999975 999987752 2222
Q ss_pred ccEEEEEecCC-----CCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccc-----
Q 017084 239 VEAIFAVHVSH-----EHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE----- 308 (377)
Q Consensus 239 ~d~~i~~~~~~-----~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~----- 308 (377)
.+.+ +.+++. ..+.....+..+.+ |..+++|+++|+++|++.|+ +.|||..++++|..|++...+.
T Consensus 161 ~~~i-i~e~~~~~~~~~~~~~~~~i~~~~k--G~~~~~v~v~G~~~Hss~p~-~~nAi~~~~~~l~~l~~~~~~~~~~~~ 236 (426)
T PRK07906 161 VTEA-ISEVGGFSLTVPGRDRLYLIETAEK--GLAWMRLTARGRAGHGSMVN-DDNAVTRLAEAVARIGRHRWPLVLTPT 236 (426)
T ss_pred hheE-EECCCceeeccCCCccEEEEEeccc--eEEEEEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhCCCCcccCHH
Confidence 3333 333321 01111122233333 78899999999999999986 4999999999999986532100
Q ss_pred ---------------cCCC-------------------CCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHH
Q 017084 309 ---------------ANPL-------------------DSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQ 354 (377)
Q Consensus 309 ---------------~~~~-------------------~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~ 354 (377)
..+. ...+++++.|+||.+.|+||++|++.+|+|+.+.++ +++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG~~~NviP~~~~~~~d~R~~p~~~-~~i~~ 315 (426)
T PRK07906 237 VRAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAGYKVNVIPGTAEAVVDGRFLPGRE-EEFLA 315 (426)
T ss_pred HHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEeccCccccCCCceEEEEEEeECCCCc-HHHHH
Confidence 0000 024788999999999999999999999999999886 66777
Q ss_pred HHHHHHh
Q 017084 355 RIEEVLF 361 (377)
Q Consensus 355 ~i~~~~~ 361 (377)
+|++.+.
T Consensus 316 ~i~~~~~ 322 (426)
T PRK07906 316 TVDELLG 322 (426)
T ss_pred HHHHHhC
Confidence 7777653
No 38
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=100.00 E-value=6.5e-34 Score=278.46 Aligned_cols=243 Identities=18% Similarity=0.156 Sum_probs=196.4
Q ss_pred HHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCCCCCeEEEecCcCcccCCCCCCCCcc
Q 017084 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYK 176 (377)
Q Consensus 97 ~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~~~ 176 (377)
.+++++++++|++|||++++|.++++|+.++|+++|++++.+ ...|++++++++ +|+|+|+||+||||.. .|+.
T Consensus 5 ~~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~-~~~n~i~~~~~~-~~~l~~~~H~DtVp~~----~p~~ 78 (348)
T PRK04443 5 ALEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAWVD-EAGNARGPAGDG-PPLVLLLGHIDTVPGD----IPVR 78 (348)
T ss_pred hHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEcCCC-CCEEEEEeeccccCCC----CCcE
Confidence 477999999999999999999999999999999999998764 336899998654 5899999999999953 2332
Q ss_pred cccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecCCCCC
Q 017084 177 SKVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHP 252 (377)
Q Consensus 177 p~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~~~~p 252 (377)
.++|++||||+. +++++++.|++.| +.+++++|.|+|++|||+|+ |...++.++. .+|++++.+|+..
T Consensus 79 -~~~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~~~~~~l~~~~--~~d~~iv~Ept~~-- 150 (348)
T PRK04443 79 -VEDGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSSGGARLVADRE--RPDAVIIGEPSGW-- 150 (348)
T ss_pred -eeCCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCChhHHHHHHhcc--CCCEEEEeCCCCc--
Confidence 468999999995 8899999999988 35688999999999999986 5666666543 5899998876431
Q ss_pred cceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhc---cccCCCCCcEEEEEEEeeCcccc
Q 017084 253 TGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVS---REANPLDSQVVSVTYFNGGDHLD 329 (377)
Q Consensus 253 ~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~---~~~~~~~~~~~~v~~i~gG~~~N 329 (377)
..+. .+. .|..+++|+++|+++|||.| |.|||..|++++..|+++.. .....++..+++++.++ ...|
T Consensus 151 -~~i~--~~~--kG~~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~i~--~~~n 221 (348)
T PRK04443 151 -DGIT--LGY--KGRLLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFEANDGRERVFDQVTPKLVDFD--SSSD 221 (348)
T ss_pred -ccee--eec--ccEEEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHhcCccccccccccceeeeEEe--cCCC
Confidence 1121 122 27889999999999999987 79999999999999987543 11122334567787777 3579
Q ss_pred eecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 330 MIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 330 vIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
+||++|++.+++|++|.++.+++.++|++.+..
T Consensus 222 ~iP~~~~~~~d~R~~p~~~~~~i~~~i~~~~~~ 254 (348)
T PRK04443 222 GLTVEAEMTVGLRLPPGLSPEEAREILDALLPT 254 (348)
T ss_pred CCCceEEEEEEEccCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999999999999999998744
No 39
>PRK07079 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=284.55 Aligned_cols=272 Identities=14% Similarity=0.081 Sum_probs=205.0
Q ss_pred HhHHHHHHhccCcchHHHHHHHHHHhHcCCCCCcc---hHHHHHHHH----HHHHhCCCcEEeec-----CCceEEEEec
Q 017084 82 ACSKEVMELARRPETVDWLKSVRRTIHQNPELAFQ---EFETSRLLR----AELDRMEIGYKYPL-----AKTGIRAWVG 149 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~---E~~~~~~l~----~~L~~lG~~v~~~~-----~~~~lia~~g 149 (377)
.+.+.+.+++ ++ +++++++++|++|||+|++ +.++++|++ ++|+++|++++... +++|+++.++
T Consensus 5 ~~~~~~~~~~--~~--~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~ 80 (469)
T PRK07079 5 AAIARAAAYF--DS--GAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERI 80 (469)
T ss_pred HHHHHHHHhh--cc--HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeC
Confidence 4446666666 43 5799999999999999974 446676664 58999999987532 3579999985
Q ss_pred CC-CCCeEEEecCcCcccCCCCCCCC-----ccc-ccCCeEeeCCch---HHHHHHHHHHHHHHhc-CCCCCceEEEEEe
Q 017084 150 TG-GPPFVALRADMDALPIQEAVEWE-----YKS-KVAGKMHACGHD---AHVAMLIGAAKILKSR-EHLLKGTVILIFQ 218 (377)
Q Consensus 150 ~~-~~~~I~l~aH~DvVP~~~~~~w~-----~~p-~~~G~l~GrG~~---g~~a~~l~a~~~L~~~-~~~l~~~I~lif~ 218 (377)
++ ++|+|+|+||+||||+++ +.|. |.+ +++|++||||+. +++++++.|+++|.+. +..++++|.|+|+
T Consensus 81 ~~~~~~~lll~gH~DvVp~~~-~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~ 159 (469)
T PRK07079 81 EDDALPTVLIYGHGDVVRGYD-EQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLLIE 159 (469)
T ss_pred CCCCCCEEEEEcccCCCCCCh-HHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 43 468999999999999753 4465 444 468999999995 8889999999998653 4678999999999
Q ss_pred cCCCCcC-cHHHHHHcCC--CCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEee--CCCCCCCCCC--CcHH
Q 017084 219 PAEEAGN-GAKRMMADGA--LEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGK--KGGAANPHRS--VDPV 291 (377)
Q Consensus 219 ~dEE~g~-Ga~~li~~g~--~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~--~~Hs~~p~~g--~nAI 291 (377)
+|||+|+ |++.+++... + ..|++++.+++...+. ...+..+.+ |..+++|+++|+ +.||+ ++.| .||+
T Consensus 160 ~dEE~g~~G~~~l~~~~~~~~-~~d~~iv~e~~~~~~~-~~~i~~g~k--G~~~~~v~v~G~~~~~hs~-~~~g~~~nai 234 (469)
T PRK07079 160 MGEEIGSPGLAEVCRQHREAL-AADVLIASDGPRLSAE-RPTLFLGSR--GAVNFRLRVNLRDGAHHSG-NWGGLLRNPG 234 (469)
T ss_pred CccccCCccHHHHHHHhHHhc-CCCEEEEeCCCccCCC-CeEEEEecc--eEEEEEEEEeeCCCCCCCC-ccccccCCHH
Confidence 9999987 9999988632 2 3799998876532211 111223333 888999999997 44666 3344 6999
Q ss_pred HHHHHHHHHHHhhhcc------------------------cc--------------------CCCCCcEEEEEEEeeCc-
Q 017084 292 LAASAAVISLQGLVSR------------------------EA--------------------NPLDSQVVSVTYFNGGD- 326 (377)
Q Consensus 292 ~~~~~~i~~l~~~~~~------------------------~~--------------------~~~~~~~~~v~~i~gG~- 326 (377)
..+++.|..+.+.... .. ......+++++.|+||.
T Consensus 235 ~~l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv~~i~gG~~ 314 (469)
T PRK07079 235 TVLAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGWNTLEVLAFKTGNP 314 (469)
T ss_pred HHHHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhCCceEEEeeecCCC
Confidence 9999999988532100 00 00112468899999984
Q ss_pred --ccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhh
Q 017084 327 --HLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFF 363 (377)
Q Consensus 327 --~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~ 363 (377)
..|+||++|++++|+|++|.++.+++.++|+++++..
T Consensus 315 ~~~~NvVP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~ 353 (469)
T PRK07079 315 DAPVNAIPGSARAVCQLRFVVGTDWENLAPHLRAHLDAH 353 (469)
T ss_pred CCcceEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999864
No 40
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-33 Score=280.09 Aligned_cols=267 Identities=21% Similarity=0.288 Sum_probs=208.0
Q ss_pred cchHHHHHHHHHHhHcCCCCC-cchHHHHHHHHHHHHhCCCcEEeec-C----CceEEEEecCCCC-CeEEEecCcCccc
Q 017084 94 PETVDWLKSVRRTIHQNPELA-FQEFETSRLLRAELDRMEIGYKYPL-A----KTGIRAWVGTGGP-PFVALRADMDALP 166 (377)
Q Consensus 94 ~~~~~~li~~~~~lv~iPs~s-~~E~~~~~~l~~~L~~lG~~v~~~~-~----~~~lia~~g~~~~-~~I~l~aH~DvVP 166 (377)
...++++++++++|+++||++ ..+.++++++.++|+++|+.+.+.. + ..|+++.++++.+ |+|+|+||+||||
T Consensus 9 ~~~~~~~~~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~~~l~l~~H~DvVP 88 (409)
T COG0624 9 LDLLDDILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGGPTLLLGGHLDVVP 88 (409)
T ss_pred HHhhHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCCCeEEEeccccccC
Confidence 356788889999999999999 8889999999999999999987642 2 3599999976533 9999999999999
Q ss_pred CCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCC--
Q 017084 167 IQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGAL-- 236 (377)
Q Consensus 167 ~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~-- 236 (377)
+++...|.++| .++|++||||+. |.+++++.|++.|.+.+..++++|.++|++|||+|+ |+..+++.+..
T Consensus 89 ~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~ 168 (409)
T COG0624 89 AGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGEEAL 168 (409)
T ss_pred CCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCCcchHHHHHhcchhh
Confidence 98877786555 356899999995 899999999999999888899999999999999997 88888776532
Q ss_pred -CCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCC--CCCCCc----HHHHHHHHHHHHHhhhcccc
Q 017084 237 -EDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN--PHRSVD----PVLAASAAVISLQGLVSREA 309 (377)
Q Consensus 237 -~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~--p~~g~n----AI~~~~~~i~~l~~~~~~~~ 309 (377)
..+|+++..+++...+.+..... +. .|..+++|+++|+++|+|. |+.+.| |+..+.+++..+.++.....
T Consensus 169 ~~~~d~~i~~E~~~~~~~~~~~~~-~~--kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~~ 245 (409)
T COG0624 169 GIRPDYEIVGEPTLESEGGDIIVV-GH--KGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGF 245 (409)
T ss_pred ccCCCEEEeCCCCCcccCCCeEEE-cc--eeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhcccccccc
Confidence 35799998886211111222111 32 2889999999999999998 999999 55555555555544322211
Q ss_pred CCCCCcEEEEEEEee--------CcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 310 NPLDSQVVSVTYFNG--------GDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 310 ~~~~~~~~~v~~i~g--------G~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
.. +..++++.+.+ |...|+||++|++.+|+|..|..+.+++.+++++.++..+.
T Consensus 246 ~~--~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~ 307 (409)
T COG0624 246 DG--PLGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAP 307 (409)
T ss_pred cC--CccccccccccCCcccccCCccCceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhcc
Confidence 10 24455554444 44569999999999999999999999999999999887654
No 41
>PRK07205 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=282.67 Aligned_cols=262 Identities=13% Similarity=0.112 Sum_probs=191.8
Q ss_pred cchHHHHHHHHHHhHcCCCCCcch----------HHHHHHHHHHHHhCCCcEEeecCCceEEEEecCCCCCeEEEecCcC
Q 017084 94 PETVDWLKSVRRTIHQNPELAFQE----------FETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMD 163 (377)
Q Consensus 94 ~~~~~~li~~~~~lv~iPs~s~~E----------~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~~~~~I~l~aH~D 163 (377)
++.++++++++++|++|||+++++ .++++++.++|+++|++++....+.++++++|.+ +|+|+|+||+|
T Consensus 7 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~-~~~lll~gH~D 85 (444)
T PRK07205 7 EKVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPKGYYGYAEIGQG-EELLAILCHLD 85 (444)
T ss_pred HHhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCCCeEEEEEecCC-CcEEEEEEeec
Confidence 567889999999999999999754 5688999999999999987654345667777643 58999999999
Q ss_pred cccCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCC
Q 017084 164 ALPIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGA 235 (377)
Q Consensus 164 vVP~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~ 235 (377)
|||+++.+.|.++| ++||++||||+. |++++++.|+++|++.+..++++|.|+|++|||+|+ |++.+++...
T Consensus 86 vVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~~ 165 (444)
T PRK07205 86 VVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNRYNEVEE 165 (444)
T ss_pred cCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcccHHHHHhCCC
Confidence 99998777786655 468999999994 899999999999999888889999999999999987 8888877421
Q ss_pred CC----CccE---EEEEecC------CCCCcceeEeecc--------------cc---------ccc----eeEEEEEEE
Q 017084 236 LE----DVEA---IFAVHVS------HEHPTGVIGSRPG--------------PL---------LAG----CGFFHAVIS 275 (377)
Q Consensus 236 ~~----~~d~---~i~~~~~------~~~p~g~i~~~~g--------------~~---------~ag----~~~~~I~v~ 275 (377)
.. ..|. ++..+.. ..+|........| .. ..| ..+.+|+++
T Consensus 166 ~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~ 245 (444)
T PRK07205 166 QATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVL 245 (444)
T ss_pred CCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEE
Confidence 10 1121 1111000 0111111100001 00 001 123489999
Q ss_pred eeCCCCCCCCCCCcHHHHHHHHHHHHHhh-----hccc---------------cCCCCCcEEEEEEEeeCcccceecCcE
Q 017084 276 GKKGGAANPHRSVDPVLAASAAVISLQGL-----VSRE---------------ANPLDSQVVSVTYFNGGDHLDMIPDAV 335 (377)
Q Consensus 276 G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~-----~~~~---------------~~~~~~~~~~v~~i~gG~~~NvIP~~~ 335 (377)
|+++|++.|+.|.|||..+++++.++++. .... .......++|++. .|+||++|
T Consensus 246 G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nvg~------~nvvP~~a 319 (444)
T PRK07205 246 GKSVHAKDAPQGINAVIRLAKALVVLEPHPALDFLANVIGEDATGLNIFGDIEDEPSGKLSFNIAG------LTITKEKS 319 (444)
T ss_pred eEEcccCCCccCcCHHHHHHHHHHhccHHHHHHHHHHhcCCCCccccCCccccCCCcCCceEEeEE------EEEECCEE
Confidence 99999999999999999999999887542 0000 0011224455543 58999999
Q ss_pred EEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 336 VIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 336 ~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
++.+|+|+.+.++.+++.++|+++++.
T Consensus 320 ~~~ld~R~~p~~~~e~v~~~i~~~~~~ 346 (444)
T PRK07205 320 EIRIDIRIPVLADKEKLVQQLSQKAQE 346 (444)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 42
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=100.00 E-value=6.7e-33 Score=281.15 Aligned_cols=262 Identities=13% Similarity=0.055 Sum_probs=196.2
Q ss_pred HHHhccCcchHHHHHHHHHHhHcCCCCCcc------------hHHHHHHHHHHHHhCCCcEEeecCCceEEEEe-cCCCC
Q 017084 87 VMELARRPETVDWLKSVRRTIHQNPELAFQ------------EFETSRLLRAELDRMEIGYKYPLAKTGIRAWV-GTGGP 153 (377)
Q Consensus 87 ~~~~~~~~~~~~~li~~~~~lv~iPs~s~~------------E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~-g~~~~ 153 (377)
+.+++ +++++++++++++|++|||++.+ +.++++++.++|+++||+++...+ +++.+ +++++
T Consensus 4 ~~~~i--~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~---~~~~~~~~~~~ 78 (466)
T TIGR01886 4 FKEEV--EARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFDN---YAGHVEYGAGD 78 (466)
T ss_pred HHHHH--HHhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEecC---CceeEEecCCC
Confidence 34456 67789999999999999999753 467899999999999999886432 22222 22336
Q ss_pred CeEEEecCcCcccCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-
Q 017084 154 PFVALRADMDALPIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN- 225 (377)
Q Consensus 154 ~~I~l~aH~DvVP~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~- 225 (377)
|+|+|+||+||||+++ .|.++| +++|++||||+. |++++++.|+++|++.+..++++|.|+|++|||+|+
T Consensus 79 ~~l~~~gH~DvVp~~~--~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~ 156 (466)
T TIGR01886 79 ERLGIIGHMDVVPAGE--GWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGWV 156 (466)
T ss_pred CEEEEEeecccCCCCC--CCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCcc
Confidence 8999999999999874 476555 468999999994 788899999999999988999999999999999986
Q ss_pred cHHHHHHcCCCCCccEEEEEecCC----CCCcceeEe---------------------------------ecc-------
Q 017084 226 GAKRMMADGALEDVEAIFAVHVSH----EHPTGVIGS---------------------------------RPG------- 261 (377)
Q Consensus 226 Ga~~li~~g~~~~~d~~i~~~~~~----~~p~g~i~~---------------------------------~~g------- 261 (377)
|++++++.+. .+|+++..+... +++ |.... ..+
T Consensus 157 g~~~~~~~~~--~~d~~~~~d~~~~~~~ge~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~ 233 (466)
T TIGR01886 157 DMDYYFKHEE--TPDFGFSPDAEFPIINGEK-GNFTLELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALK 233 (466)
T ss_pred cHHHHHhcCc--CCCEEEECCCCceeEEEec-ceEEEEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHH
Confidence 9999998754 256654432110 011 00000 000
Q ss_pred ------ccccce---------eEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHH-------------Hhhhcc------
Q 017084 262 ------PLLAGC---------GFFHAVISGKKGGAANPHRSVDPVLAASAAVISL-------------QGLVSR------ 307 (377)
Q Consensus 262 ------~~~ag~---------~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l-------------~~~~~~------ 307 (377)
....|. .+++|+++|+++|+|.|+.|+|||..|++++..+ +++...
T Consensus 234 ~~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (466)
T TIGR01886 234 AAYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEK 313 (466)
T ss_pred HHHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCccc
Confidence 000011 2688999999999999999999999999988772 221100
Q ss_pred -----ccCCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 308 -----EANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 308 -----~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
........++|+|.|+||.. | ++|++.+|+|++|.++.+++.++|++.+..
T Consensus 314 ~~~~~~~~~~g~~S~nvgvI~gG~~-~---~~~~l~iD~R~~Pge~~eev~~eI~~~i~~ 369 (466)
T TIGR01886 314 LGIAFHDELMGDLAMNAGMFDFDHA-N---KESKLLLNFRYPQGTSPETMQKQVLDKFGG 369 (466)
T ss_pred CCCcccccCcCceEEEeEEEEEecC-C---ceEEEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 11223456899999999865 3 899999999999999999999999998875
No 43
>PRK13381 peptidase T; Provisional
Probab=100.00 E-value=6e-33 Score=276.90 Aligned_cols=251 Identities=17% Similarity=0.161 Sum_probs=197.0
Q ss_pred HHHHHHHHhHcCCCCCc----------chHHHHHHHHHHHHhCCCcEEeecCCceEEEEecC-CCC-CeEEEecCcCccc
Q 017084 99 WLKSVRRTIHQNPELAF----------QEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT-GGP-PFVALRADMDALP 166 (377)
Q Consensus 99 ~li~~~~~lv~iPs~s~----------~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~-~~~-~~I~l~aH~DvVP 166 (377)
++++.+.++++|||+|+ .+.++++||.++|+++|++....++.+||++++++ +++ |+|+|+||+||||
T Consensus 2 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~nvi~~~~g~~~~~~~lll~~H~D~Vp 81 (404)
T PRK13381 2 QLTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVIDEHAIVTAKLPGNTPGAPRIGFIAHLDTVD 81 (404)
T ss_pred cHHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEcCCeEEEEEEecCCCCCCeEEEEEEecCCC
Confidence 46788999999999997 36789999999999999965444567899999954 344 8999999999999
Q ss_pred CCCC-C-C-----CCc-----------------cc-----ccCCeEeeCCc----h---HHHHHHHHHHHHHHhcCCCCC
Q 017084 167 IQEA-V-E-----WEY-----------------KS-----KVAGKMHACGH----D---AHVAMLIGAAKILKSREHLLK 210 (377)
Q Consensus 167 ~~~~-~-~-----w~~-----------------~p-----~~~G~l~GrG~----~---g~~a~~l~a~~~L~~~~~~l~ 210 (377)
++.. + . |.. .| .++|++||||+ . +++++++.|++.|++.+ .++
T Consensus 82 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~ 160 (404)
T PRK13381 82 VGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE-VEH 160 (404)
T ss_pred ccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC-CCC
Confidence 8652 1 1 111 11 14678999997 3 88999999999998764 468
Q ss_pred ceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCC-CCCCC
Q 017084 211 GTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN-PHRSV 288 (377)
Q Consensus 211 ~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~-p~~g~ 288 (377)
++|.|+|++|||.|+ |++.++..++ ..|++++.|.. ++ +.+.. +. .|..+++|+++|+++|++. |+.|.
T Consensus 161 g~i~~~~~~dEE~g~~G~~~~~~~~~--~~d~~~~~~~~--~~-~~i~~--~~--~G~~~~~v~v~Gk~aHa~~~p~~g~ 231 (404)
T PRK13381 161 GDIVVAFVPDEEIGLRGAKALDLARF--PVDFAYTIDCC--EL-GEVVY--EN--FNAASAEITITGVTAHPMSAKGVLV 231 (404)
T ss_pred CCEEEEEEcccccccccHHHHHHhcC--CCCEEEEecCC--Cc-ceEEE--ec--CcceEEEEEEEeEecCCCCCcccCc
Confidence 899999999999985 9999987643 37888887753 34 33322 22 2678899999999999884 88899
Q ss_pred cHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 289 DPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 289 nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
|||..|++++.+|+++..+........+++++.++|+ |++|++.+++|+.+.++.+++.++|++.++.++.
T Consensus 232 NAI~~a~~~i~~l~~~~~~~~~~~~~~~i~v~~i~g~------p~~~~~~~diR~~~~~~~e~i~~~i~~~~~~~~~ 302 (404)
T PRK13381 232 NPILMANDFISHFPRQETPEHTEGREGYIWVNDLQGN------VNKAKLKLIIRDFDLDGFEARKQFIEEVVAKINA 302 (404)
T ss_pred CHHHHHHHHHHhCCccCCCCCCCCcccEEEEEeEEeC------cceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876433222222345777777664 9999999999999999999999999999988754
No 44
>PRK05469 peptidase T; Provisional
Probab=100.00 E-value=1.1e-32 Score=275.42 Aligned_cols=253 Identities=17% Similarity=0.160 Sum_probs=198.0
Q ss_pred HHHHHHHHHhHcCCCCCcc----------hHHHHHHHHHHHHhCCCc-EEeecCCceEEEEecCC---CCCeEEEecCcC
Q 017084 98 DWLKSVRRTIHQNPELAFQ----------EFETSRLLRAELDRMEIG-YKYPLAKTGIRAWVGTG---GPPFVALRADMD 163 (377)
Q Consensus 98 ~~li~~~~~lv~iPs~s~~----------E~~~~~~l~~~L~~lG~~-v~~~~~~~~lia~~g~~---~~~~I~l~aH~D 163 (377)
+++++.+++|++|||.|.+ |.++++||+++|+++|++ ++. +...|+++.++++ ++|+|+|+||||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~-~~~~~v~~~~~g~~~~~~~~i~l~~H~D 80 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTL-DENGYVMATLPANVDKDVPTIGFIAHMD 80 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE-CCCeEEEEEecCCCCCCCCeEEEEEecc
Confidence 4678899999999999977 789999999999999997 543 3456799998442 359999999999
Q ss_pred cccCCCC---------------------CCCCcccc--------cCCeEeeCCc-----h--HHHHHHHHHHHHHHhcCC
Q 017084 164 ALPIQEA---------------------VEWEYKSK--------VAGKMHACGH-----D--AHVAMLIGAAKILKSREH 207 (377)
Q Consensus 164 vVP~~~~---------------------~~w~~~p~--------~~G~l~GrG~-----~--g~~a~~l~a~~~L~~~~~ 207 (377)
|||+.+. +.|+|.|. ..+.+||||+ | +++++++.|++.|++.+.
T Consensus 81 ~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~ 160 (408)
T PRK05469 81 TAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPE 160 (408)
T ss_pred CCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCC
Confidence 9987431 34555552 2357899995 3 889999999999988766
Q ss_pred CCCceEEEEEecCCCCcCcHHHHHHcCCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCC-CCCC
Q 017084 208 LLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-NPHR 286 (377)
Q Consensus 208 ~l~~~I~lif~~dEE~g~Ga~~li~~g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~-~p~~ 286 (377)
.++++|.|+|++|||.|.|++.++..+. ..|+++.+++ .+.+.+... . .|..+++|+++|+++|++ .|+.
T Consensus 161 ~~~g~v~~~f~~dEE~g~Ga~~~~~~~~--~~~~~~~~~~---~~~g~~~~~--~--~g~~~~~i~v~Gk~~Ha~~~p~~ 231 (408)
T PRK05469 161 IKHGDIRVAFTPDEEIGRGADKFDVEKF--GADFAYTVDG---GPLGELEYE--N--FNAASAKITIHGVNVHPGTAKGK 231 (408)
T ss_pred CCCCCEEEEEecccccCCCHHHhhhhhc--CCcEEEEecC---CCcceEEec--c--CceeEEEEEEeeecCCCCCCccc
Confidence 6789999999999998779988865432 3577666653 344544332 1 256789999999999987 5899
Q ss_pred CCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhhc
Q 017084 287 SVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFFL 366 (377)
Q Consensus 287 g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~~ 366 (377)
|.|||..+++++..|+++..+........+++++.++|| |++|++++++|+.+.++.+.+.++|++++++++..
T Consensus 232 g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~g~i~gg------p~~~~i~~diR~~~~e~~e~i~~~i~~~~~~~~~~ 305 (408)
T PRK05469 232 MVNALLLAADFHAMLPADETPETTEGYEGFYHLTSIKGT------VEEAELSYIIRDFDREGFEARKALMQEIAKKVNAK 305 (408)
T ss_pred ccCHHHHHHHHHHhCCCCCCCCCCCCceEEEEEEEEEEc------cceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988876432222222245677778776 89999999999999999999999999999988643
No 45
>PRK07318 dipeptidase PepV; Reviewed
Probab=100.00 E-value=2.5e-32 Score=277.25 Aligned_cols=262 Identities=15% Similarity=0.133 Sum_probs=194.8
Q ss_pred HHHhccCcchHHHHHHHHHHhHcCCCCCcc------------hHHHHHHHHHHHHhCCCcEEeecCCceEEEEe-cCCCC
Q 017084 87 VMELARRPETVDWLKSVRRTIHQNPELAFQ------------EFETSRLLRAELDRMEIGYKYPLAKTGIRAWV-GTGGP 153 (377)
Q Consensus 87 ~~~~~~~~~~~~~li~~~~~lv~iPs~s~~------------E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~-g~~~~ 153 (377)
+.+++ ++.++++++++++|++|||++++ +.++++|++++|+++|++++... |+++.+ .++++
T Consensus 5 ~~~~~--~~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~---n~~~~~~~~~~~ 79 (466)
T PRK07318 5 WKKEV--EKRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD---NYAGHIEYGEGE 79 (466)
T ss_pred HHHHH--HHhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec---CccceEEECCCC
Confidence 45666 67889999999999999999865 56899999999999999987643 444443 12235
Q ss_pred CeEEEecCcCcccCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-
Q 017084 154 PFVALRADMDALPIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN- 225 (377)
Q Consensus 154 ~~I~l~aH~DvVP~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~- 225 (377)
++|+|+||+||||+++ .|.++| +++|++||||+. |++++++.|++.|++.+..++++|.|+|++|||.|+
T Consensus 80 ~~l~l~gH~DvVp~~~--~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~~ 157 (466)
T PRK07318 80 EVLGILGHLDVVPAGD--GWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGWK 157 (466)
T ss_pred CEEEEEEecCCCCCCC--CCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCch
Confidence 8999999999999864 576555 368999999984 889999999999998888889999999999999987
Q ss_pred cHHHHHHcCCCCCccE---------EEEEecCC-----------------------CCCccee------Ee---------
Q 017084 226 GAKRMMADGALEDVEA---------IFAVHVSH-----------------------EHPTGVI------GS--------- 258 (377)
Q Consensus 226 Ga~~li~~g~~~~~d~---------~i~~~~~~-----------------------~~p~g~i------~~--------- 258 (377)
|++++++.... .+. ++..+++. +.+.+.+ ..
T Consensus 158 G~~~l~~~~~~--~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~ 235 (466)
T PRK07318 158 CMDYYFEHEEA--PDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLI 235 (466)
T ss_pred hHHHHHHhCCC--CCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcCccceecCcccEEEEecCCHHHHH
Confidence 99999886321 122 12222100 0000000 00
Q ss_pred -----------eccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHh------hh----c-----------
Q 017084 259 -----------RPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQG------LV----S----------- 306 (377)
Q Consensus 259 -----------~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~------~~----~----------- 306 (377)
..|....+..+++|+++|+++|++.|+.|.|||..|++++.+|+. ++ .
T Consensus 236 ~~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (466)
T PRK07318 236 AAFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKL 315 (466)
T ss_pred HHHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccC
Confidence 001111123479999999999999999999999999999999864 10 0
Q ss_pred ---cccCCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 307 ---REANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 307 ---~~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
......+..+++++.++||... .|++.+|+|+.+.++.+++.++|++.++.
T Consensus 316 ~~~~~~~~~g~~t~nvg~i~gg~~~-----~~~~~iDiR~~p~~~~~~v~~~i~~~~~~ 369 (466)
T PRK07318 316 GIAYEDDVMGDLTMNVGVFSFDEEK-----GGTLGLNFRYPVGTDFEKIKAKLEKLIGV 369 (466)
T ss_pred CCcccCCCccCeEEEeeEEEEecCc-----EEEEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 0011123457889999988431 69999999999999999999999999776
No 46
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-32 Score=259.78 Aligned_cols=264 Identities=16% Similarity=0.173 Sum_probs=208.3
Q ss_pred HHHHHHHHHHhHcCCCCCcch--H-HHHHHHHHHHHhCCCcEEee---cCCceEEEEe-cCCC-CCeEEEecCcCcccCC
Q 017084 97 VDWLKSVRRTIHQNPELAFQE--F-ETSRLLRAELDRMEIGYKYP---LAKTGIRAWV-GTGG-PPFVALRADMDALPIQ 168 (377)
Q Consensus 97 ~~~li~~~~~lv~iPs~s~~E--~-~~~~~l~~~L~~lG~~v~~~---~~~~~lia~~-g~~~-~~~I~l~aH~DvVP~~ 168 (377)
....+..+++..+||++-++. . ++++|+.++.+.+|..++.. .+.++++.+| |+.+ -++|+|++|+||||+.
T Consensus 24 ~~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP~f 103 (420)
T KOG2275|consen 24 ENISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVPVF 103 (420)
T ss_pred cchHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccCCC
Confidence 345677788888999886442 3 78999999999999988642 4578899999 5554 4999999999999986
Q ss_pred CCCCCCccc-----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC--cHHHHHHcCCCCC
Q 017084 169 EAVEWEYKS-----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GAKRMMADGALED 238 (377)
Q Consensus 169 ~~~~w~~~p-----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~--Ga~~li~~g~~~~ 238 (377)
.+ .|.|+| .++|.+||||+. +..++.++|++.|+..++++.++|.+.|++|||.|| |++.+.+.-.++.
T Consensus 104 ~e-~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~~~~~~ 182 (420)
T KOG2275|consen 104 RE-KWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFKK 182 (420)
T ss_pred cc-cCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhhhhhhcc
Confidence 54 898888 257899999995 667788999999999999999999999999999996 9999987445555
Q ss_pred ccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhc---------ccc
Q 017084 239 VEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVS---------REA 309 (377)
Q Consensus 239 ~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~---------~~~ 309 (377)
....++++.....+.....+..+.+ |.+++++++.|++||+|.| .-..|+.++.++|..+.+... +..
T Consensus 183 l~~~filDEG~~se~d~~~vfyaEk--g~w~~~v~~~G~~GHss~~-~~nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~ 259 (420)
T KOG2275|consen 183 LNLGFILDEGGATENDFATVFYAEK--GPWWLKVTANGTPGHSSYP-PPNTAIEKLEKLVESLEEFREKQVDLLASGPKL 259 (420)
T ss_pred cceeEEecCCCCCcccceeEEEEee--ceeEEEEEecCCCCCCCCC-CCccHHHHHHHHHHHHHHhHHHHHHHhhcCCce
Confidence 6667777654223333322233333 7889999999999999984 334677777777777755431 223
Q ss_pred CCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHH-HHHHhhhh
Q 017084 310 NPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRI-EEVLFFFF 364 (377)
Q Consensus 310 ~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i-~~~~~~~a 364 (377)
...+.++++++.++||.+.|++|++.++.+|+|..+..+.+++.+++ ++.+++..
T Consensus 260 ~~~~vtT~Nv~~i~GGv~~N~~P~~~ea~~dirv~~~~d~~~i~~~l~~~w~~~~~ 315 (420)
T KOG2275|consen 260 ALGDVTTINVGIINGGVQSNVLPETFEAAFDIRVRPHVDVKAIRDQLEDEWAEEAG 315 (420)
T ss_pred eccceeEEeeeeeecccccCcCchhheeeeeeEeccCCCHHHHHHHHHHHhhhhcC
Confidence 44567899999999999999999999999999999999999999999 77776553
No 47
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=100.00 E-value=1.4e-31 Score=271.67 Aligned_cols=252 Identities=17% Similarity=0.171 Sum_probs=196.9
Q ss_pred HHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecC----CCCCeEEEecCcCcccCCCCC-
Q 017084 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT----GGPPFVALRADMDALPIQEAV- 171 (377)
Q Consensus 97 ~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~----~~~~~I~l~aH~DvVP~~~~~- 171 (377)
.+++++++++|++|||+|++|.++++|+.++|+++|++++++. ..|+++.+.+ .+.|.|+|.|||||||+++.+
T Consensus 9 ~~~~~~~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~~~~d~-~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~ 87 (485)
T PRK15026 9 PQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQ-VGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDT 87 (485)
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe-cCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCc
Confidence 5779999999999999999999999999999999999998753 3577777632 235899999999999986532
Q ss_pred --CCCccc----ccCCeEeeCCch------HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCC
Q 017084 172 --EWEYKS----KVAGKMHACGHD------AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALED 238 (377)
Q Consensus 172 --~w~~~p----~~~G~l~GrG~~------g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~ 238 (377)
+|..+| .++|++||||+. ++++++ +.+|++.+. .+++|.++|++|||.|+ |++.+.. +.+ .
T Consensus 88 ~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~---l~~l~~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~-~~~-~ 161 (485)
T PRK15026 88 VHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASA---LAVLADENV-VHGPLEVLLTMTEEAGMDGAFGLQS-NWL-Q 161 (485)
T ss_pred cccCCCCCceEEEcCCEEEeCCccccCccHHHHHHH---HHHHHhCCC-CCCCEEEEEEcccccCcHhHHHhhh-ccC-C
Confidence 465554 367899999983 233333 444555554 48899999999999996 9999865 333 5
Q ss_pred ccEEEEEecCCCCCcceeE-eecccc-------------ccceeEEEEEEEe-eCCCCC-CCCCCC-cHHHHHHHHHHHH
Q 017084 239 VEAIFAVHVSHEHPTGVIG-SRPGPL-------------LAGCGFFHAVISG-KKGGAA-NPHRSV-DPVLAASAAVISL 301 (377)
Q Consensus 239 ~d~~i~~~~~~~~p~g~i~-~~~g~~-------------~ag~~~~~I~v~G-~~~Hs~-~p~~g~-nAI~~~~~~i~~l 301 (377)
.|+++.+++.. .+.+. .+.|.. ..|..+++|+++| ++|||+ .|+.|+ |||..++++|.++
T Consensus 162 ~~~~i~~e~~~---~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~ 238 (485)
T PRK15026 162 ADILINTDSEE---EGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGH 238 (485)
T ss_pred cCEEEEeCCCC---CCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHh
Confidence 89999998742 12221 111100 1255689999999 999999 699999 9999999999985
Q ss_pred HhhhccccCCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhhcCc
Q 017084 302 QGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFFLNE 368 (377)
Q Consensus 302 ~~~~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~~~~ 368 (377)
.+ ...++++.|+||.+.|+||++|++.+++|....+..+.+.+.+.+.++...+..+
T Consensus 239 ~~----------~~~~~v~~i~GG~~~NaIp~~a~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (485)
T PRK15026 239 AE----------ELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDALKSLVNTYQEILKNELAEKE 295 (485)
T ss_pred Hh----------hCCeEEEEEeCCCccCCCCCCcEEEEEEChhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 42 1567899999999999999999999999999999999999988888876655443
No 48
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=100.00 E-value=2.3e-31 Score=259.10 Aligned_cols=231 Identities=14% Similarity=0.083 Sum_probs=183.5
Q ss_pred HHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCCCCCeEEEecCcCcccCCCCCCCCcccccCCe
Q 017084 103 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGK 182 (377)
Q Consensus 103 ~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~~~p~~~G~ 182 (377)
++++|++|||+|++|.++++||+++|+++|+++.. ....|+++..+++ +|+|+|+|||||||. .|+.. .++|+
T Consensus 2 ~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~-~~~~~~~~~~~~~-~~~i~~~~H~D~vp~----~~~~~-~~~g~ 74 (336)
T TIGR01902 2 LLKDLLEIYSPSGKEANAAKFLEEISKDLGLKLII-DDAGNFILGKGDG-HKKILLAGHVDTVPG----YIPVK-IEGGL 74 (336)
T ss_pred hHHHHhcCCCCCcchHHHHHHHHHHHHHcCCEEEE-CCCCcEEEEeCCC-CceEEEEccccccCC----CcccE-EeCCE
Confidence 58899999999999999999999999999999854 3346788776543 699999999999994 23322 46799
Q ss_pred EeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecCCCCCcceeEe
Q 017084 183 MHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHPTGVIGS 258 (377)
Q Consensus 183 l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~~~~p~g~i~~ 258 (377)
+||||+. +++++++.|++.|++. ..+|.|+|++|||+|+ |++.+++... .+++++.+|+. .+ .+.
T Consensus 75 i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~ii~ept~-~~--~i~- 143 (336)
T TIGR01902 75 LYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKGAREVIDKNY---PFYVIVGEPSG-AE--GIT- 143 (336)
T ss_pred EEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCccHHHHHhhcC---CCEEEEecCCC-Cc--cee-
Confidence 9999994 7888999999988754 3589999999999986 9999988743 35778777642 11 221
Q ss_pred eccccccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeCcccceecCcEEEE
Q 017084 259 RPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIG 338 (377)
Q Consensus 259 ~~g~~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~ 338 (377)
.+. .|..++++++.|+++|++.|+ +|+..|.+++..|.+...... .....+++++.++||.+.|+||++|+++
T Consensus 144 -~~~--kG~~~~~v~~~G~~~Hss~~~---~ai~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~i~gg~~~nvIP~~a~~~ 216 (336)
T TIGR01902 144 -LGY--KGSLQLKIMCEGTPFHSSSAG---NAAELLIDYSKKIIEVYKQPE-NYDKPSIVPTIIRFGESYNDTPAKLELH 216 (336)
T ss_pred -eee--eeEEEEEEEEEecCcccCCCh---hHHHHHHHHHHHHHHHhcccc-CCCCCcceeEEEEccCCCcCCCceEEEE
Confidence 122 278899999999999999875 489999999998874222111 1122457788899999999999999999
Q ss_pred EEEecCChhhHHHHHHHHHH
Q 017084 339 GTLRAFSNTSFYQLLQRIEE 358 (377)
Q Consensus 339 ~~iR~~~~~~~e~~~~~i~~ 358 (377)
+|+|+.+.++.+++.+++++
T Consensus 217 idiR~~p~~~~~~~~~~i~~ 236 (336)
T TIGR01902 217 FDLRYPPNNKPEEAIKEITD 236 (336)
T ss_pred EEEeeCCCCCHHHHHHHHHh
Confidence 99999999999999888886
No 49
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-31 Score=253.98 Aligned_cols=278 Identities=20% Similarity=0.214 Sum_probs=217.8
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhHcCCCCCcch------HHHHHHHHHHHHhCCCcEEeec-------------CCceE
Q 017084 84 SKEVMELARRPETVDWLKSVRRTIHQNPELAFQE------FETSRLLRAELDRMEIGYKYPL-------------AKTGI 144 (377)
Q Consensus 84 ~~~~~~~~~~~~~~~~li~~~~~lv~iPs~s~~E------~~~~~~l~~~L~~lG~~v~~~~-------------~~~~l 144 (377)
.+++++.+ |..++++++.++++++|+|+|.++ .++++|+.++|+++|-+++..+ ..+-+
T Consensus 4 l~~~fq~i--d~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvv 81 (473)
T KOG2276|consen 4 LTKVFQSI--DLNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVV 81 (473)
T ss_pred HHHHHHHh--hccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhh
Confidence 36778888 899999999999999999998764 5899999999999997765311 12457
Q ss_pred EEEecCC-CCCeEEEecCcCcccCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEE
Q 017084 145 RAWVGTG-GPPFVALRADMDALPIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILI 216 (377)
Q Consensus 145 ia~~g~~-~~~~I~l~aH~DvVP~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~li 216 (377)
.+++|+. ++++++++||+||+|++.+++|.++| +.+|+|+|||++ |+++..+.+++++.+.+.+++.+|.|+
T Consensus 82 l~~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~ 161 (473)
T KOG2276|consen 82 LGVLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFV 161 (473)
T ss_pred hhcccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEE
Confidence 7888886 47999999999999999999999988 468999999995 889999999999999999999999999
Q ss_pred EecCCCCcC-cHHHHHH---cCCCCCccEEEEEecCC---CCCcceeEeeccccccceeEEEEEEEe--eCCCCCC-CCC
Q 017084 217 FQPAEEAGN-GAKRMMA---DGALEDVEAIFAVHVSH---EHPTGVIGSRPGPLLAGCGFFHAVISG--KKGGAAN-PHR 286 (377)
Q Consensus 217 f~~dEE~g~-Ga~~li~---~g~~~~~d~~i~~~~~~---~~p~g~i~~~~g~~~ag~~~~~I~v~G--~~~Hs~~-p~~ 286 (377)
|.++||+|+ |...+++ +.+++++|++++.+.+| ..|+-++++| |...+.|+|+| +-.|||. ...
T Consensus 162 ~EgmEEsgS~~L~~l~~~~kD~~~~~vD~vciSdnyWlg~kkPcltyGlR------G~~yf~i~v~g~~~DlHSGvfGG~ 235 (473)
T KOG2276|consen 162 FEGMEESGSEGLDELIEKEKDKFFKDVDFVCISDNYWLGTKKPCLTYGLR------GVIYFQIEVEGPSKDLHSGVFGGV 235 (473)
T ss_pred EEechhccCccHHHHHHHHhhhhhccCCEEEeeCceeccCCCcccccccc------cceeEEEEEeecccccccccccch
Confidence 999999998 8888765 45677899999999876 3455555443 78889999999 7889885 323
Q ss_pred CCcHHHHHHHHHHHHHhhhcc----------------c------c---------------CCCC--------------Cc
Q 017084 287 SVDPVLAASAAVISLQGLVSR----------------E------A---------------NPLD--------------SQ 315 (377)
Q Consensus 287 g~nAI~~~~~~i~~l~~~~~~----------------~------~---------------~~~~--------------~~ 315 (377)
-+.|+..+..++..|.+...+ + . -+.+ -.
T Consensus 236 ~hE~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~~~k~~~l~~rWryPSLs 315 (473)
T KOG2276|consen 236 VHEAMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPTDDKKRILMHRWRYPSLS 315 (473)
T ss_pred hHHHHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccccccCchHHHhhhhcccCccc
Confidence 334554444444444221000 0 0 0000 01
Q ss_pred EEEE-EEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhh-hhcCcc
Q 017084 316 VVSV-TYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFF-FFLNEP 369 (377)
Q Consensus 316 ~~~v-~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~-a~~~~~ 369 (377)
++.+ |.+.|..+..+||.++..+|.+|+.|..+++.+.+.+.++++.. ++++++
T Consensus 316 ihgIeGaFs~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~nS~ 371 (473)
T KOG2276|consen 316 IHGIEGAFSGPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNSP 371 (473)
T ss_pred eecccceeeCCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 1233 66778889999999999999999999999999999999999877 556654
No 50
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=4.3e-31 Score=264.09 Aligned_cols=248 Identities=15% Similarity=0.132 Sum_probs=192.2
Q ss_pred HHHHHHHHHHhHcCCC---------CCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecC-CCCCeEEEecCcCccc
Q 017084 97 VDWLKSVRRTIHQNPE---------LAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT-GGPPFVALRADMDALP 166 (377)
Q Consensus 97 ~~~li~~~~~lv~iPs---------~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~-~~~~~I~l~aH~DvVP 166 (377)
.+++++++.+|++|++ .+++|.++++||+++|+++|+++++. ...|+++++++ +++|+|+|+||+||||
T Consensus 9 ~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nl~a~~~g~~~~~~l~l~gH~DtVp 87 (412)
T PRK12892 9 GQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID-GIGNVFGRLPGPGPGPALLVGSHLDSQN 87 (412)
T ss_pred HHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCeEEEEccccCCC
Confidence 4578888999998866 56678899999999999999999864 45699999954 3458999999999999
Q ss_pred CCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCc----C--cHHHHHHcCCC----
Q 017084 167 IQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG----N--GAKRMMADGAL---- 236 (377)
Q Consensus 167 ~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g----~--Ga~~li~~g~~---- 236 (377)
++ |++||++ ++++++.+++.|++.+..++++|.|++++|||.+ + |++.+++....
T Consensus 88 ~~------------g~~dg~~---Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~ 152 (412)
T PRK12892 88 LG------------GRYDGAL---GVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRLDPADAL 152 (412)
T ss_pred CC------------CcccchH---HHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCCCHHHHH
Confidence 74 5567765 6888999999999988889999999999999984 3 88888742100
Q ss_pred ------C-------------CccEEEEEecCC--------------CCCcce-eEeeccccccceeEEEEEEEeeCCCCC
Q 017084 237 ------E-------------DVEAIFAVHVSH--------------EHPTGV-IGSRPGPLLAGCGFFHAVISGKKGGAA 282 (377)
Q Consensus 237 ------~-------------~~d~~i~~~~~~--------------~~p~g~-i~~~~g~~~ag~~~~~I~v~G~~~Hs~ 282 (377)
+ ..|+++..+|.. .++.+. ..+..+. .|..+++|+++|+++|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~~~~i~~~~--kG~~~~~i~v~G~~aHa~ 230 (412)
T PRK12892 153 AARCRSDGVPLRDALAAAGLAGRPRPAADRARPKGYLEAHIEQGPVLEQAGLPVGVVTGI--VGIWQYRITVTGEAGHAG 230 (412)
T ss_pred hCccCCCCcCHHHHHHHcCCChhhcccccccCccEEEEEEeccCHhHhhCCCcEEEEEEe--ccceEEEEEEEEECCCCC
Confidence 0 123333333210 011110 1122222 278899999999999998
Q ss_pred C-CC-CCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeC-cccceecCcEEEEEEEecCChhhHHHHHHHHHHH
Q 017084 283 N-PH-RSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEV 359 (377)
Q Consensus 283 ~-p~-~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG-~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~ 359 (377)
. |+ .|.|||..+++++.+|+++..+.. .+.++++|.++|| .+.|+||++|++++++|+.+.++.+++.++|+++
T Consensus 231 ~~p~~~g~nAi~~a~~~i~~l~~~~~~~~---~~~~~~vg~i~gg~~~~NvIP~~a~~~~diR~~p~~~~~~v~~~i~~~ 307 (412)
T PRK12892 231 TTPMALRRDAGLAAAEMIAAIDEHFPRVC---GPAVVTVGRVALDPGSPSIIPGRVEFSFDARHPSPPVLQRLVALLEAL 307 (412)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHhcC---CCcEEEEEEEEecCCCCeEECCeEEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 5 75 578999999999999988643322 2468999999987 7999999999999999999999999999999999
Q ss_pred Hhhhhh
Q 017084 360 LFFFFF 365 (377)
Q Consensus 360 ~~~~a~ 365 (377)
++..+.
T Consensus 308 ~~~~~~ 313 (412)
T PRK12892 308 CREIAR 313 (412)
T ss_pred HHHHHH
Confidence 987653
No 51
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=100.00 E-value=4.4e-31 Score=263.94 Aligned_cols=253 Identities=14% Similarity=0.146 Sum_probs=194.1
Q ss_pred HHHHHHHHHhHcCCCCCc----------chHHHHHHHHHHHHhCCCc-EEeecCCceEEEEecC-CC--CCeEEEecCcC
Q 017084 98 DWLKSVRRTIHQNPELAF----------QEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWVGT-GG--PPFVALRADMD 163 (377)
Q Consensus 98 ~~li~~~~~lv~iPs~s~----------~E~~~~~~l~~~L~~lG~~-v~~~~~~~~lia~~g~-~~--~~~I~l~aH~D 163 (377)
+.+++.+.++++|+|.|+ .|.+++++|+++|+++|++ ++.+.+..||++++++ .+ .|+|+|.||||
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~~~~~~~~~i~~~aHmD 82 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPSNTDKDVPTIGFLAHVD 82 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecCCCCCCCCEEEEEEecc
Confidence 467888889999999997 5668999999999999997 8776446799999844 33 29999999999
Q ss_pred cccCCCCC-------------------------CCCccc-----------ccCCeEeeCCchHHHHHHHHHHHHHHhcCC
Q 017084 164 ALPIQEAV-------------------------EWEYKS-----------KVAGKMHACGHDAHVAMLIGAAKILKSREH 207 (377)
Q Consensus 164 vVP~~~~~-------------------------~w~~~p-----------~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~ 207 (377)
|||.+..+ .|.|.| ..++.+||+...+++|+++.|++.|++.+.
T Consensus 83 Tv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~ 162 (410)
T TIGR01882 83 TADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHPE 162 (410)
T ss_pred cCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCCC
Confidence 99853221 343433 134589996656999999999999998644
Q ss_pred CCCceEEEEEecCCCCcCcHHHHHHcCCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCCC-CC
Q 017084 208 LLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANP-HR 286 (377)
Q Consensus 208 ~l~~~I~lif~~dEE~g~Ga~~li~~g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~p-~~ 286 (377)
.++++|.|+|++|||.|+|++.+...+. +.|+.+.++ ++|.+.+..+. .|..+++|+++|+++|++.+ +.
T Consensus 163 ~~~g~I~~~ft~dEE~g~Ga~~l~~~~~--~~~~~~~i~---gep~g~i~~~~----~g~~~~~I~v~Gk~aHa~~~~~~ 233 (410)
T TIGR01882 163 IKHGTIRVAFTPDEEIGRGAHKFDVKDF--NADFAYTVD---GGPLGELEYET----FSAAAAKITIQGNNVHPGTAKGK 233 (410)
T ss_pred CCCCCEEEEEECcccCCcCcchhhhhhc--CccEEEEeC---CCCCCeEEEcc----ccceEEEEEEEEEecCcccChHH
Confidence 4689999999999999888888865433 466666655 35667654432 25689999999999999964 67
Q ss_pred CCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 287 SVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 287 g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
+.|||..+.+++..+....... .+.-+.+.+++| ..|.||++|++.+++|+.+.++.+++.++|++++++++.
T Consensus 234 g~nAi~~a~~~~~~l~~~~~~~-----~t~~~~g~i~~g-~i~giPd~a~l~~diR~~~~e~~e~i~~~i~~i~~~~~~ 306 (410)
T TIGR01882 234 MINAAQIAIDLHNLLPEDDRPE-----YTEGREGFFHLL-SIDGTVEEAKLHYIIRDFEKENFQERKELMKRIVEKMNN 306 (410)
T ss_pred HHHHHHHHHHHHHhcCCcCCCc-----cccceeEEEEEE-eEEEecCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877665431111 111123455665 467799999999999999999999999999999998754
No 52
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.98 E-value=2.5e-30 Score=258.64 Aligned_cols=247 Identities=15% Similarity=0.205 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhHcCCCC----------CcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEe-cCC-CCCeEEEecCcCc
Q 017084 97 VDWLKSVRRTIHQNPEL----------AFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWV-GTG-GPPFVALRADMDA 164 (377)
Q Consensus 97 ~~~li~~~~~lv~iPs~----------s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~-g~~-~~~~I~l~aH~Dv 164 (377)
.+++++++++|++|||. |++|.++++||+++|+++|+++++. ...|+++++ |++ ++|+|+|.||+||
T Consensus 9 ~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~-~~~n~~a~~~g~~~~~~~l~l~~H~Dt 87 (412)
T PRK12893 9 GERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD-AIGNLFGRRAGTDPDAPPVLIGSHLDT 87 (412)
T ss_pred HHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEeCCCCCCCCEEEEEecccC
Confidence 57899999999999964 4458999999999999999999863 446999999 433 3589999999999
Q ss_pred ccCCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCc-----C-cHHHHHHcCCC--
Q 017084 165 LPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-----N-GAKRMMADGAL-- 236 (377)
Q Consensus 165 VP~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g-----~-Ga~~li~~g~~-- 236 (377)
||++ |..+|+| ++++++++++.|++.+..++++|.|+|++|||.| . |+..+.+....
T Consensus 88 Vp~~------------g~~dgk~---gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~~~~ 152 (412)
T PRK12893 88 QPTG------------GRFDGAL---GVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALPLDD 152 (412)
T ss_pred CCCC------------Ccccchh---hHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCChHH
Confidence 9964 4456654 7789999999999888889999999999999986 2 77777643110
Q ss_pred -----------------------------CCccEEEEEecCCC-----CCcceeEeeccccccceeEEEEEEEeeCCCCC
Q 017084 237 -----------------------------EDVEAIFAVHVSHE-----HPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA 282 (377)
Q Consensus 237 -----------------------------~~~d~~i~~~~~~~-----~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~ 282 (377)
++.|..+.+|...+ .+. ...+..+ ..|..+++|+++|+++|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~--~kG~~~~~i~v~G~~aHas 229 (412)
T PRK12893 153 ALARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEGL-PIGVVTG--IQGIRWLEVTVEGQAAHAG 229 (412)
T ss_pred HHhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCCC-cEEEEee--ecccEEEEEEEEEECCCcC
Confidence 01233444443110 010 1111122 2378899999999999998
Q ss_pred C-CC-CCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeC-cccceecCcEEEEEEEecCChhhHHHHHHHHHHH
Q 017084 283 N-PH-RSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEV 359 (377)
Q Consensus 283 ~-p~-~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG-~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~ 359 (377)
. |+ .|.|||..|++++..|+++..+. . ...+++++.+++| .+.|+||++|++++++|+.|.++.+++.++|+++
T Consensus 230 ~~p~~~G~NAI~~a~~~i~~l~~~~~~~-~--~~~~~~vg~i~ggg~~~NvVP~~a~~~~diR~~p~~~~~~i~~~i~~~ 306 (412)
T PRK12893 230 TTPMAMRRDALVAAARIILAVERIAAAL-A--PDGVATVGRLRVEPNSRNVIPGKVVFTVDIRHPDDARLDAMEAALRAA 306 (412)
T ss_pred CCcchhccCHHHHHHHHHHHHHHHHHhc-C--CCceEEEEEEEeeCCCceEECCeeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 5 85 79999999999999998875321 1 2367889999974 7999999999999999999999999999999999
Q ss_pred Hhhhhh
Q 017084 360 LFFFFF 365 (377)
Q Consensus 360 ~~~~a~ 365 (377)
++..+.
T Consensus 307 ~~~~~~ 312 (412)
T PRK12893 307 CAKIAA 312 (412)
T ss_pred HHHHHH
Confidence 988754
No 53
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.98 E-value=2.9e-30 Score=260.32 Aligned_cols=255 Identities=15% Similarity=0.110 Sum_probs=183.8
Q ss_pred HHHHHHHHHhHcCCCCCcc------------hHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCCCCCeEEEecCcCcc
Q 017084 98 DWLKSVRRTIHQNPELAFQ------------EFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDAL 165 (377)
Q Consensus 98 ~~li~~~~~lv~iPs~s~~------------E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~~~~~I~l~aH~DvV 165 (377)
+++++++++|++|||++.+ +.++++|++++|+++|++++...+ ...++.+++ +.|+|+|+||+|||
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~-~~~~~~~~~-~~~~l~l~gH~D~V 79 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVDN-YAGYAEYGQ-GEEYLGILGHLDVV 79 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEecC-ceEEEEeCC-CCCeEEEEeecCCC
Confidence 4689999999999999832 368999999999999999875322 122333443 35899999999999
Q ss_pred cCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCC
Q 017084 166 PIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALE 237 (377)
Q Consensus 166 P~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~ 237 (377)
|+++ .|.++| .++|++||||+. |++++++.|++.|++.+.+++++|.|+|++|||.|+ |+.++++.....
T Consensus 80 p~~~--~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~ 157 (447)
T TIGR01887 80 PAGD--GWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGWACIDYYFEHEEAP 157 (447)
T ss_pred CCCC--CCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcHhHHHHHHhcCCC
Confidence 9865 465544 367999999995 788999999999998888889999999999999987 999888753211
Q ss_pred ----CccE---EEEEecC----------------------CCCCccee------Eee-c-------------------cc
Q 017084 238 ----DVEA---IFAVHVS----------------------HEHPTGVI------GSR-P-------------------GP 262 (377)
Q Consensus 238 ----~~d~---~i~~~~~----------------------~~~p~g~i------~~~-~-------------------g~ 262 (377)
..|. ++..++. .++|.+.+ .+. . |.
T Consensus 158 ~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~ 237 (447)
T TIGR01887 158 DIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGS 237 (447)
T ss_pred CEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceE
Confidence 1121 2222211 12222221 000 0 11
Q ss_pred cccceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHH--hhh----c---c-------------cc--CCCCCcEEE
Q 017084 263 LLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQ--GLV----S---R-------------EA--NPLDSQVVS 318 (377)
Q Consensus 263 ~~ag~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~--~~~----~---~-------------~~--~~~~~~~~~ 318 (377)
...+..+++|+++|+++|++.|+.|.|||..|++++.+++ +.. . . .. ...+..++|
T Consensus 238 ~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~n 317 (447)
T TIGR01887 238 FEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMN 317 (447)
T ss_pred EEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEE
Confidence 0111126899999999999999999999999999999886 210 0 0 00 112345788
Q ss_pred EEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHh
Q 017084 319 VTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLF 361 (377)
Q Consensus 319 v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~ 361 (377)
++.|++| +|+.|++.+++|++++++.+++.+++.+.+.
T Consensus 318 vg~I~~g-----~p~~~~~~~d~R~~p~~~~e~~~~~i~~~~~ 355 (447)
T TIGR01887 318 VGVIDYE-----NAEAGLIGLNVRYPVGNDPDTMLKNELAKES 355 (447)
T ss_pred EEEEEEe-----CCcEEEEEEEEecCCCCCHHHHHHHHHHHhh
Confidence 9999988 4999999999999999999987777765543
No 54
>PRK06156 hypothetical protein; Provisional
Probab=99.97 E-value=3e-30 Score=265.05 Aligned_cols=259 Identities=16% Similarity=0.181 Sum_probs=190.3
Q ss_pred cchHHHHHHHHHHhHcCCCCCc-----ch----HHHHHHHHHHHHhCCCcEEeecCCceEE-EEecCCCCCeEEEecCcC
Q 017084 94 PETVDWLKSVRRTIHQNPELAF-----QE----FETSRLLRAELDRMEIGYKYPLAKTGIR-AWVGTGGPPFVALRADMD 163 (377)
Q Consensus 94 ~~~~~~li~~~~~lv~iPs~s~-----~E----~~~~~~l~~~L~~lG~~v~~~~~~~~li-a~~g~~~~~~I~l~aH~D 163 (377)
+++.+++++++++|++|||+++ +| .++++||.++|+++|++++.. .++++ +.+++.+.|+|+|+||||
T Consensus 42 ~~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~--~~~v~~~~~~g~~~~~l~l~gH~D 119 (520)
T PRK06156 42 LKYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNV--DNRVLEIGLGGSGSDKVGILTHAD 119 (520)
T ss_pred hhhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEec--CCeEEEEEecCCCCCeEEEEEecC
Confidence 5678899999999999999984 22 357899999999999998642 23344 566544458999999999
Q ss_pred cccCCCCCCCCc-----cc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHH
Q 017084 164 ALPIQEAVEWEY-----KS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRM 230 (377)
Q Consensus 164 vVP~~~~~~w~~-----~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~l 230 (377)
|||++. +.|.+ +| .++|++||||+. +++++++.|++.|++.+..++++|.|+|++|||.|+ |++.+
T Consensus 120 vVp~~~-~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~ 198 (520)
T PRK06156 120 VVPANP-ELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDGDPLKYY 198 (520)
T ss_pred ccCCCC-ccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCchhHHHH
Confidence 999864 45766 55 368999999984 788899999999998888888999999999999987 99999
Q ss_pred HHcCCCCCccEEEEEecC----CCCCcc-----------------------------------eeEeecccc--------
Q 017084 231 MADGALEDVEAIFAVHVS----HEHPTG-----------------------------------VIGSRPGPL-------- 263 (377)
Q Consensus 231 i~~g~~~~~d~~i~~~~~----~~~p~g-----------------------------------~i~~~~g~~-------- 263 (377)
++.+. ..++++.++.. ..++.. ...+.....
T Consensus 199 ~~~~~--~~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~~ 276 (520)
T PRK06156 199 LERYT--PPDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGDPAALAAALQ 276 (520)
T ss_pred HHhcC--CCCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCCHHHHHHHHH
Confidence 88643 23444332210 001100 000000000
Q ss_pred ---------ccce---------eEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhcc------------------
Q 017084 264 ---------LAGC---------GFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSR------------------ 307 (377)
Q Consensus 264 ---------~ag~---------~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~------------------ 307 (377)
..|. .+++|+++|+++|+|.|+.|.|||..+++++.+|++....
T Consensus 277 ~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~ 356 (520)
T PRK06156 277 AAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDGDLPHNHAADAARYINDLVGLDY 356 (520)
T ss_pred HHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccccccchhHHHHHHHHHHhhCCCC
Confidence 0011 2799999999999999999999999999999998752110
Q ss_pred ---------ccCCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhh
Q 017084 308 ---------EANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFF 363 (377)
Q Consensus 308 ---------~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~ 363 (377)
.....+..+++++.+.+|. ++|++.+|+|+++.++.+++.++|++.++..
T Consensus 357 ~g~~~g~~~~~~~~g~~t~~~~~I~gg~------~~~~l~iDiR~~p~~~~eev~~~I~~~i~~~ 415 (520)
T PRK06156 357 LGEKFGVAYKDDFMGPLTLSPTVVGQDD------KGTEVTVNLRRPVGKTPELLKGEIADALAAW 415 (520)
T ss_pred ccCcCCccccCCCccCcEEeeeEEEEeC------CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 0011123456777777763 6899999999999999999999999998764
No 55
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.97 E-value=5.3e-30 Score=260.88 Aligned_cols=251 Identities=15% Similarity=0.150 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecC----CCCCeEEEecCcCcccCCCC--
Q 017084 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT----GGPPFVALRADMDALPIQEA-- 170 (377)
Q Consensus 97 ~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~----~~~~~I~l~aH~DvVP~~~~-- 170 (377)
.+++++++++|++||++|++|.++++|+.++|+++|++++++. ..|+++.+.+ .+.|+|+|.||+||||.+..
T Consensus 3 ~~~~~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~ 81 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLEVKQDE-VGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDS 81 (477)
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCeEEEeC-CCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCC
Confidence 3578899999999999999999999999999999999988753 4689998832 13489999999999998643
Q ss_pred -CCCCccc----ccCCeEeeCCc----h--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCC
Q 017084 171 -VEWEYKS----KVAGKMHACGH----D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALED 238 (377)
Q Consensus 171 -~~w~~~p----~~~G~l~GrG~----~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~ 238 (377)
..|..+| .++|++||||+ | +++++++.+++ +. ...+++|.++|++|||.|. |++.+.+... .
T Consensus 82 ~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~---~~-~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~~--~ 155 (477)
T TIGR01893 82 LHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILE---DN-NLKHPPLELLFTVDEETGMDGALGLDENWL--S 155 (477)
T ss_pred CCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHh---cC-CCCCCCEEEEEEeccccCchhhhhcChhhc--C
Confidence 3565444 46899999998 5 44555555443 33 3357799999999999885 9999976532 3
Q ss_pred ccEEEEEecCCC------CCcce-e----EeeccccccceeEEEEEEEe-eCCCCC-CCCCCC-cHHHHHHHHHHHHHhh
Q 017084 239 VEAIFAVHVSHE------HPTGV-I----GSRPGPLLAGCGFFHAVISG-KKGGAA-NPHRSV-DPVLAASAAVISLQGL 304 (377)
Q Consensus 239 ~d~~i~~~~~~~------~p~g~-i----~~~~g~~~ag~~~~~I~v~G-~~~Hs~-~p~~g~-nAI~~~~~~i~~l~~~ 304 (377)
.++++..++... .+.+. + .........|..+++|+++| +++|+| .|+.++ ||+..|+++|.++++.
T Consensus 156 ~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~ 235 (477)
T TIGR01893 156 GKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELKEN 235 (477)
T ss_pred CcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhc
Confidence 466665553110 11000 0 00000001367789999999 999998 498985 9999999999998875
Q ss_pred hccccCCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhh
Q 017084 305 VSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFF 364 (377)
Q Consensus 305 ~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a 364 (377)
. ..+++.+.||.+.|+||++|++.+++|.......+++.+.+.+.++..+
T Consensus 236 ~----------~~~v~~~~gg~~~N~ip~~~~~~~diR~~~~~~l~~~~~~~~~~~~~~~ 285 (477)
T TIGR01893 236 L----------NFRLSDIKGGSKRNAIPREAKALIAIDENDVKLLENLVKNFQSKFKSEY 285 (477)
T ss_pred C----------CeEEEEEeCCCcccccCCceEEEEEEChhHHHHHHHHHHHHHHHHHHHh
Confidence 2 1567888999999999999999999999999999999999988888776
No 56
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.97 E-value=1.2e-29 Score=253.98 Aligned_cols=246 Identities=15% Similarity=0.221 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhHcC-C---------CCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCC--CCCeEEEecCcCc
Q 017084 97 VDWLKSVRRTIHQN-P---------ELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG--GPPFVALRADMDA 164 (377)
Q Consensus 97 ~~~li~~~~~lv~i-P---------s~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~--~~~~I~l~aH~Dv 164 (377)
.+.+++++++|++| + |.|++|.++++||+++|+++|+++++. ...|+++++++. ++|.|+|.||+||
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~-~~~nl~a~~~g~~~~~~~l~l~gH~Dt 84 (413)
T PRK09290 6 AERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD-AVGNLFGRLEGRDPDAPAVLTGSHLDT 84 (413)
T ss_pred HHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCCEEEEecCccC
Confidence 46677788888887 3 778899999999999999999999864 457999999653 3589999999999
Q ss_pred ccCCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCc-----C-cHHHHHHc-----
Q 017084 165 LPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-----N-GAKRMMAD----- 233 (377)
Q Consensus 165 VP~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g-----~-Ga~~li~~----- 233 (377)
||++ |..+|+ +++++++.|++.|++.+..++++|.|+|++|||.| . |++.+++.
T Consensus 85 Vp~~------------g~~d~k---~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~ 149 (413)
T PRK09290 85 VPNG------------GRFDGP---LGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPED 149 (413)
T ss_pred CCCC------------CCcCCH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccCHHH
Confidence 9974 222333 47889999999999888888999999999999984 2 77766532
Q ss_pred -------------------CCCCCccEEEEE--ecCCC--------------CCcce-eEeeccccccceeEEEEEEEee
Q 017084 234 -------------------GALEDVEAIFAV--HVSHE--------------HPTGV-IGSRPGPLLAGCGFFHAVISGK 277 (377)
Q Consensus 234 -------------------g~~~~~d~~i~~--~~~~~--------------~p~g~-i~~~~g~~~ag~~~~~I~v~G~ 277 (377)
| + +.|++++. +|+.. +|.+. ..+..+. .|..+++|+++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~-~-~~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~~~~i~~~~--kG~~~~~i~v~Gk 225 (413)
T PRK09290 150 ALALRDADGVSFAEALAAIG-Y-DGDEAVGAARARRDIKAFVELHIEQGPVLEAEGLPIGVVTGI--VGQRRYRVTFTGE 225 (413)
T ss_pred HHhccCCCCCCHHHHHHHcC-C-ChhhccccccCCCCccEEEEEEeccCHHHHHCCCcEEEEeee--eccEEEEEEEEEE
Confidence 2 1 24555432 22210 12111 1112222 2788999999999
Q ss_pred CCCCC-CC-CCCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeC-cccceecCcEEEEEEEecCChhhHHHHHH
Q 017084 278 KGGAA-NP-HRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNTSFYQLLQ 354 (377)
Q Consensus 278 ~~Hs~-~p-~~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG-~~~NvIP~~~~~~~~iR~~~~~~~e~~~~ 354 (377)
++|++ .| +.|.|||..+++++..|+++..+.. .+.+++++.+++| .+.|+||++|++++++|+.|.++.+++.+
T Consensus 226 ~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~~---~~~~~~~g~i~~g~~~~NvIP~~a~~~~diR~~p~e~~e~v~~ 302 (413)
T PRK09290 226 ANHAGTTPMALRRDALLAAAEIILAVERIAAAHG---PDLVATVGRLEVKPNSVNVIPGEVTFTLDIRHPDDAVLDALVA 302 (413)
T ss_pred CCCCCCCCchhccCHHHHHHHHHHHHHHHHHhcC---CCeEEEEEEEEEcCCCCeEECCEEEEEEEEeCCCHHHHHHHHH
Confidence 99998 58 5789999999999999987643211 2357889999975 79999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 017084 355 RIEEVLFFFFF 365 (377)
Q Consensus 355 ~i~~~~~~~a~ 365 (377)
+|++++++.+.
T Consensus 303 ~i~~~~~~~~~ 313 (413)
T PRK09290 303 ELRAAAEAIAA 313 (413)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 57
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.97 E-value=1.6e-28 Score=245.86 Aligned_cols=245 Identities=16% Similarity=0.156 Sum_probs=184.0
Q ss_pred HHHHHHHHHhHcCC---------CCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCC--CCCeEEEecCcCccc
Q 017084 98 DWLKSVRRTIHQNP---------ELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG--GPPFVALRADMDALP 166 (377)
Q Consensus 98 ~~li~~~~~lv~iP---------s~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~--~~~~I~l~aH~DvVP 166 (377)
.++++.+..|.+|| |.+++|.++++||.++|+++|+++++. ...|+++++++. ++|+|+|.|||||||
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nlia~~~g~~~~~~~l~~~~H~DtVp 87 (414)
T PRK12890 9 ERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD-AAGNLFGRLPGRDPDLPPLMTGSHLDTVP 87 (414)
T ss_pred HHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc-CCCcEEEEeCCCCCCCCEEEEeCcccCCC
Confidence 35666666666555 778999999999999999999999874 457999999543 358999999999999
Q ss_pred CCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC------cHHHHHHc-------
Q 017084 167 IQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN------GAKRMMAD------- 233 (377)
Q Consensus 167 ~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~------Ga~~li~~------- 233 (377)
++ |..++. +++++++.+++.|++.+..++++|.|+|++|||.|+ |++.+.+.
T Consensus 88 ~~------------g~~D~~---~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~ 152 (414)
T PRK12890 88 NG------------GRYDGI---LGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVL 152 (414)
T ss_pred CC------------CCcCCH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHH
Confidence 74 332222 478899999999998888889999999999999742 66555332
Q ss_pred -----------------CCCCCccEEE-------------EEecCCC-----CCcceeEeeccccccceeEEEEEEEeeC
Q 017084 234 -----------------GALEDVEAIF-------------AVHVSHE-----HPTGVIGSRPGPLLAGCGFFHAVISGKK 278 (377)
Q Consensus 234 -----------------g~~~~~d~~i-------------~~~~~~~-----~p~g~i~~~~g~~~ag~~~~~I~v~G~~ 278 (377)
|. ..|.+. .+|...+ .+. ...+..+. .|..+++|+++|++
T Consensus 153 ~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~-~~~i~~~~--kG~~~~~i~v~Gk~ 227 (414)
T PRK12890 153 ATRDDDGTTLAEALRRIGG--DPDALPGALRPPGAVAAFLELHIEQGPVLEAEGL-PIGVVTAI--QGIRRQAVTVEGEA 227 (414)
T ss_pred hccCCCCCCHHHHHHHcCC--ChhhccccccCCCCccEEEEEeeCcCHHHHhCCC-ceEEEEee--cCcEEEEEEEEEEC
Confidence 21 122222 2221100 000 01111122 27889999999999
Q ss_pred CCCCC-CCC-CCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeC-cccceecCcEEEEEEEecCChhhHHHHHHH
Q 017084 279 GGAAN-PHR-SVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNTSFYQLLQR 355 (377)
Q Consensus 279 ~Hs~~-p~~-g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG-~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~ 355 (377)
+|++. |+. +.|||..+++++.+|+++..+.. .+.+++++.+++| .+.|+||++|++++|+|+.+.++.+++.++
T Consensus 228 aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~~~---~~~~~~~g~i~~gg~~~NvIP~~a~~~~diR~~p~~~~~~i~~~ 304 (414)
T PRK12890 228 NHAGTTPMDLRRDALVAAAELVTAMERRARALL---HDLVATVGRLDVEPNAINVVPGRVVFTLDLRSPDDAVLEAAEAA 304 (414)
T ss_pred CCCCcCChhhccCHHHHHHHHHHHHHHHHHhcC---CCeEEEEEEEEECCCCceEECCeEEEEEEeeCCCHHHHHHHHHH
Confidence 99985 865 48999999999999988753321 3567899999974 799999999999999999999999999999
Q ss_pred HHHHHhhhhhc
Q 017084 356 IEEVLFFFFFL 366 (377)
Q Consensus 356 i~~~~~~~a~~ 366 (377)
|++.++..+..
T Consensus 305 i~~~~~~~~~~ 315 (414)
T PRK12890 305 LLAELEAIAAA 315 (414)
T ss_pred HHHHHHHHHHH
Confidence 99999877543
No 58
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.97 E-value=4.6e-28 Score=242.48 Aligned_cols=246 Identities=16% Similarity=0.149 Sum_probs=184.8
Q ss_pred HHHHHHHHhHcC----------CCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecC-C-CCCeEEEecCcCccc
Q 017084 99 WLKSVRRTIHQN----------PELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT-G-GPPFVALRADMDALP 166 (377)
Q Consensus 99 ~li~~~~~lv~i----------Ps~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~-~-~~~~I~l~aH~DvVP 166 (377)
++++.+..|-++ ++.++.|.++++||.++|+++|++++.+ ...|+++++.+ + ++|+|+|.||+||||
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~-~~gNl~a~~~g~~~~~~~l~~~~H~DtVp 89 (414)
T PRK12891 11 RLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVD-AMGNLFARRAGRDPDAAPVMTGSHADSQP 89 (414)
T ss_pred HHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEC-CCCCEEEEecCCCCCCCeEEEEecccCCC
Confidence 455555555554 2345678899999999999999999875 45699999944 3 358999999999999
Q ss_pred CCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC------cHHH-----------
Q 017084 167 IQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN------GAKR----------- 229 (377)
Q Consensus 167 ~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~------Ga~~----------- 229 (377)
.+ |..- ..+++++++.|++.|++.+..++++|.|++++|||.++ |+..
T Consensus 90 ~g------------g~~D---~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~ 154 (414)
T PRK12891 90 TG------------GRYD---GIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLL 154 (414)
T ss_pred CC------------cccc---chhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHH
Confidence 74 2111 12578899999999999999999999999999999852 5543
Q ss_pred -------------HHHcCCCC-------CccEEEEEecCCC---CCcc-eeEeeccccccceeEEEEEEEeeCCCCC-CC
Q 017084 230 -------------MMADGALE-------DVEAIFAVHVSHE---HPTG-VIGSRPGPLLAGCGFFHAVISGKKGGAA-NP 284 (377)
Q Consensus 230 -------------li~~g~~~-------~~d~~i~~~~~~~---~p~g-~i~~~~g~~~ag~~~~~I~v~G~~~Hs~-~p 284 (377)
|.+.|+.. ..++.+.+|...+ ++.+ .+.+..+. .|..+++|+++|+++|++ .|
T Consensus 155 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~e~h~e~g~vle~~~~~~~iv~~~--kG~~~~~v~v~Gk~aHa~~~P 232 (414)
T PRK12891 155 SRRDDTGRTLGEHLARIGYAGAEPVGGYPVHAAYELHIEQGAILERAGKTIGVVTAG--QGQRWYEVTLTGVDAHAGTTP 232 (414)
T ss_pred hccCCCCCCHHHHHHHCCCCcccccccCCCCEEEEEEeCCCHHHHHCCCcEEEEeec--cCcEEEEEEEEeECCCCCCCC
Confidence 33444321 1234444443211 1111 11222232 278899999999999998 58
Q ss_pred C-CCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeC-cccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 285 H-RSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 285 ~-~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG-~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
+ .|.|||..++++|.+|+++.... ..+.++++|.|+|| .+.|+||++|++.+++|+.+.++.+++.++|++.++.
T Consensus 233 ~~~g~nAI~~aa~~i~~l~~~~~~~---~~~~t~~vg~I~gG~~~~NvVP~~~~~~~diR~~~~e~~e~v~~~i~~~~~~ 309 (414)
T PRK12891 233 MAFRRDALVGAARMIAFLDALGRRD---APDARATVGMIDARPNSRNTVPGECFFTVEFRHPDDAVLDRLDAALRAELAR 309 (414)
T ss_pred cccccCHHHHHHHHHHHHHHHHHhc---CCCeEEEEEEEEeeCCCcceECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 6 58999999999999998875421 12468999999997 6999999999999999999999999999999999987
Q ss_pred hhh
Q 017084 363 FFF 365 (377)
Q Consensus 363 ~a~ 365 (377)
++.
T Consensus 310 ~~~ 312 (414)
T PRK12891 310 IAD 312 (414)
T ss_pred HHH
Confidence 653
No 59
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.96 E-value=3.3e-27 Score=235.42 Aligned_cols=233 Identities=17% Similarity=0.206 Sum_probs=176.7
Q ss_pred CCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecC-CC-CCeEEEecCcCcccCCCCCCCCcccccCCeEeeCCch
Q 017084 112 ELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT-GG-PPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD 189 (377)
Q Consensus 112 s~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~-~~-~~~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~ 189 (377)
+++++|.++++||+++|+++|++++.+ ...|+++++++ ++ +|+|+|.||+||||.+ |+.+|+.
T Consensus 25 ~~~~~e~~~~~~l~~~~~~~G~~~~~~-~~~nl~a~~~g~~~~~~~l~~~~H~DtV~~g------------g~~dg~~-- 89 (401)
T TIGR01879 25 ALSPEDREAQDLFKKRMRAAGLEVRFD-EVGNLIGRKEGTEPPLEVVLSGSHIDTVVNG------------GNFDGQL-- 89 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEe-cCCcEEEEecCCCCCCCEEEEecccccCCCC------------CccCCHH--
Confidence 457789999999999999999999864 34799999954 33 4899999999999964 5556653
Q ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCc-----C-cHHHHHHcCCCC--------------------CccE--
Q 017084 190 AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-----N-GAKRMMADGALE--------------------DVEA-- 241 (377)
Q Consensus 190 g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g-----~-Ga~~li~~g~~~--------------------~~d~-- 241 (377)
++++++.+++.|++.+.+++++|.|++++|||.+ . |++.+......+ +.+.
T Consensus 90 -gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 168 (401)
T TIGR01879 90 -GVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLPN 168 (401)
T ss_pred -HHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCccc
Confidence 6788899999999999999999999999999973 2 887775421000 1111
Q ss_pred -----------EEEEecCCC---CCcc-eeEeeccccccceeEEEEEEEeeCCCCCC-CC-CCCcHHHHHHHHHHHHHhh
Q 017084 242 -----------IFAVHVSHE---HPTG-VIGSRPGPLLAGCGFFHAVISGKKGGAAN-PH-RSVDPVLAASAAVISLQGL 304 (377)
Q Consensus 242 -----------~i~~~~~~~---~p~g-~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~-p~-~g~nAI~~~~~~i~~l~~~ 304 (377)
.+.+|.--+ ++.| .+++..+. .|..+++|+++|+++|++. |+ .+.|||..+++++.+|+++
T Consensus 169 ~~~~~~~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~--~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l 246 (401)
T TIGR01879 169 QPLRPRGDIKAYVELHIEQGPVLESNGQPIGVVNAI--AGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEK 246 (401)
T ss_pred ccccccccccEEEEEEEcCCcChhhCCCeEEEEEEe--cCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 222221000 0001 01122222 3788999999999999995 53 5789999999999999887
Q ss_pred hccccCCCCCcEEEEEEEeeC-cccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhhhh
Q 017084 305 VSREANPLDSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 305 ~~~~~~~~~~~~~~v~~i~gG-~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
..+. ..+.+.+++.+++| .+.|+||++|++.+++|+.|.++.+++.++|++.++..+.
T Consensus 247 ~~~~---~~~~~~~vg~i~~g~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~~~~~~~ 305 (401)
T TIGR01879 247 AKRM---GDPTVGTVGKVEARPNGVNVIPGKVTFTLDLRHTDAAVLRDFTQQLENDIKAISD 305 (401)
T ss_pred HHhc---CCCeEEEEEEEEecCCceEEECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5332 12357789999985 6799999999999999999999999999999999988754
No 60
>PRK08554 peptidase; Reviewed
Probab=99.95 E-value=1.2e-26 Score=233.62 Aligned_cols=257 Identities=22% Similarity=0.225 Sum_probs=178.0
Q ss_pred HHHHHHHHhHcCCCCCcc------hHHHHHHHHHHHHhCCCcEEeec--CCceEEEEecCCCCCeEEEecCcCcccCCCC
Q 017084 99 WLKSVRRTIHQNPELAFQ------EFETSRLLRAELDRMEIGYKYPL--AKTGIRAWVGTGGPPFVALRADMDALPIQEA 170 (377)
Q Consensus 99 ~li~~~~~lv~iPs~s~~------E~~~~~~l~~~L~~lG~~v~~~~--~~~~lia~~g~~~~~~I~l~aH~DvVP~~~~ 170 (377)
++++++++|++|||+++. +.+++++++++|+++|+++++.. +..++++.++++ ++.|+|+||+||||+++
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~l~~~~~~~-~~~l~l~gH~DtVp~~~- 79 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKDGYYAVYGEIGEG-KPKLLFMAHFDVVPVNP- 79 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecCCceEEEEEeCCC-CCEEEEEeccccCCCCc-
Confidence 478899999999998753 57899999999999999987532 446899988643 57899999999999864
Q ss_pred CCCC---ccc-ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcC--CCCCcc
Q 017084 171 VEWE---YKS-KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADG--ALEDVE 240 (377)
Q Consensus 171 ~~w~---~~p-~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g--~~~~~d 240 (377)
+.|. |.+ .++|++||||+. +++++++.|++.|++. .++++|.|+|++|||+|+ +...+++.. .....|
T Consensus 80 ~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~ 157 (438)
T PRK08554 80 EEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGKVIFAFTGDEEIGGAMAMHIAEKLREEGKLPK 157 (438)
T ss_pred cccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccCccccHHHHHHHHhcCCCCC
Confidence 2455 554 468899999984 8899999999999864 367899999999999986 444665431 112579
Q ss_pred EEEEEecCCCCCcceeEeecccc-----------ccce---eEEEEEEEeeC-CCCCCCCCCCc--HHHHHHHHHHHHHh
Q 017084 241 AIFAVHVSHEHPTGVIGSRPGPL-----------LAGC---GFFHAVISGKK-GGAANPHRSVD--PVLAASAAVISLQG 303 (377)
Q Consensus 241 ~~i~~~~~~~~p~g~i~~~~g~~-----------~ag~---~~~~I~v~G~~-~Hs~~p~~g~n--AI~~~~~~i~~l~~ 303 (377)
++++.+|+...+. +..+.|.. .-|. .++.+++.|.+ +|++.+..|.| ++..+++++.++..
T Consensus 158 ~~iv~Ept~~~~~--~~~~kg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~~~~~~ 235 (438)
T PRK08554 158 YMINADGIGMKPI--IRRRKGFGVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFLRESNV 235 (438)
T ss_pred EEEEeCCCCCcch--hhcCCceEEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHHHHHHHHhhcCc
Confidence 9999887543221 11111100 0011 35566677765 99998766665 58778877766653
Q ss_pred hhc---c--ccCCCCCcEEEEEEE--eeCc-----------------------------------cccee---cCcEEEE
Q 017084 304 LVS---R--EANPLDSQVVSVTYF--NGGD-----------------------------------HLDMI---PDAVVIG 338 (377)
Q Consensus 304 ~~~---~--~~~~~~~~~~~v~~i--~gG~-----------------------------------~~NvI---P~~~~~~ 338 (377)
... . ......+..++++.. .+|. ..|++ |++|+++
T Consensus 236 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~g~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~i~~g~a~~~ 315 (438)
T PRK08554 236 LAVSLEGKFLKGNVVPGEVTLTYLEPGEGEEVEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNVYSFAEGKHVLK 315 (438)
T ss_pred eEEEEeeeeeecCcccceeEEEEecCCCCccccccccHHHHHHHHHHHHHHhhccccccccceeeccceEEecCCeEEEE
Confidence 310 0 000001122222222 2333 56666 9999999
Q ss_pred EEEecCChhhHHHHHHHHHHHHhh
Q 017084 339 GTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 339 ~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
+|+|+.+ .+.+++.++|++.+..
T Consensus 316 ~DiR~~~-~~~e~v~~~i~~~~~~ 338 (438)
T PRK08554 316 LDIRAMS-YSKEDIERTLKEVLEF 338 (438)
T ss_pred EEEEecC-CCHHHHHHHHHHHhhc
Confidence 9999987 6889999999998865
No 61
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.94 E-value=4e-25 Score=229.75 Aligned_cols=249 Identities=15% Similarity=0.130 Sum_probs=192.2
Q ss_pred cchHHHHHHHHHHhHcCCCC-------------CcchHHHHHHHHHHHHhCCCc-EEeecCCceEEEEecC-C-CCCeEE
Q 017084 94 PETVDWLKSVRRTIHQNPEL-------------AFQEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWVGT-G-GPPFVA 157 (377)
Q Consensus 94 ~~~~~~li~~~~~lv~iPs~-------------s~~E~~~~~~l~~~L~~lG~~-v~~~~~~~~lia~~g~-~-~~~~I~ 157 (377)
+...+++++.+..|-+|+.+ |..+.++.+|+.+||+++|++ ++.+. -.|+++++.+ + +.|+|+
T Consensus 177 ~~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~-~gNv~~~~~g~~~~~p~v~ 255 (591)
T PRK13799 177 PAIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDA-VGNVVGRYKAADDDAKTLI 255 (591)
T ss_pred hhHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECC-CCCEEEEcCCCCCCCCeEE
Confidence 44678888999999998631 223568999999999999998 98754 4799999944 3 469999
Q ss_pred EecCcCcccCCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCc-----C-cHHHHH
Q 017084 158 LRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-----N-GAKRMM 231 (377)
Q Consensus 158 l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g-----~-Ga~~li 231 (377)
+.+|+||||. +|+.+|+ .+++++|.+++.|++.+.+++++|.|++..|||.. . |++.+.
T Consensus 256 ~gSHlDTV~~------------gG~~DG~---~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~ 320 (591)
T PRK13799 256 TGSHYDTVRN------------GGKYDGR---EGIFLAIACVKELHEQGERLPFHFEVIAFAEEEGQRFKATFLGSGALI 320 (591)
T ss_pred EeccccccCC------------CCccccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCccCCCccccchHHHh
Confidence 9999999984 4888888 48889999999999999999999999999999973 1 666554
Q ss_pred --------H----cCCC----------------------CCccEEEEEecCCC-------CCcceeEeeccccccceeEE
Q 017084 232 --------A----DGAL----------------------EDVEAIFAVHVSHE-------HPTGVIGSRPGPLLAGCGFF 270 (377)
Q Consensus 232 --------~----~g~~----------------------~~~d~~i~~~~~~~-------~p~g~i~~~~g~~~ag~~~~ 270 (377)
+ .|.- .++++.+-+|.--+ .+.| +..+. +|..++
T Consensus 321 G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~ig---vV~g~--~G~~~~ 395 (591)
T PRK13799 321 GDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDIPLG---IVTSI--AGSARY 395 (591)
T ss_pred CCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCcEE---EEeee--ccceEE
Confidence 1 1220 02334555554211 2222 22332 378899
Q ss_pred EEEEEeeCCCCCC-CC-CCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeC-cccceecCcEEEEEEEecCChh
Q 017084 271 HAVISGKKGGAAN-PH-RSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG-DHLDMIPDAVVIGGTLRAFSNT 347 (377)
Q Consensus 271 ~I~v~G~~~Hs~~-p~-~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG-~~~NvIP~~~~~~~~iR~~~~~ 347 (377)
+|+++|+++|+|. |. .+.||+..+++++..++++..+. +....+.++|.++++ .+.|+||++|++.+|+|+.+.+
T Consensus 396 ~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--~~~~~v~tVG~I~~~~ga~NvIP~~a~~~~DiR~~~~e 473 (591)
T PRK13799 396 ICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--QHASLVATMGQLNVPSGSTNVIPGRCQFSLDIRAATDE 473 (591)
T ss_pred EEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHhc--CCCCcEEEEEEEEecCCCCceECCEEEEEEEeeCCCHH
Confidence 9999999999995 64 47899999999999998875431 223357888999853 4899999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhh
Q 017084 348 SFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 348 ~~e~~~~~i~~~~~~~a~ 365 (377)
+.+.+.+++++.++.++.
T Consensus 474 ~~e~l~~~i~~~i~~ia~ 491 (591)
T PRK13799 474 IRDAAVADILAEIAAIAA 491 (591)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888888887754
No 62
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.94 E-value=4.2e-25 Score=220.50 Aligned_cols=248 Identities=13% Similarity=0.114 Sum_probs=184.7
Q ss_pred HHHHHHHHHhHcC-C---------CCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecC-C-CCCeEEEecCcCcc
Q 017084 98 DWLKSVRRTIHQN-P---------ELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT-G-GPPFVALRADMDAL 165 (377)
Q Consensus 98 ~~li~~~~~lv~i-P---------s~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~-~-~~~~I~l~aH~DvV 165 (377)
+++++.+.+|-+| . ..|.++.++.+|+.+||+++|++++.+. -.|+++++.+ . +.|+|++.+|+|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~-~gN~~~~~~g~~~~~~~i~~gsHlDtv 81 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDD-VGNLYGRLVGTEFPEETILTGSHIDTV 81 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcC-CCcEEEEecCCCCCCCeEEEeccccCC
Confidence 4455666666665 2 2234568999999999999999998764 4699999954 3 35999999999999
Q ss_pred cCCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCc-----C-cHHHHHH-------
Q 017084 166 PIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-----N-GAKRMMA------- 232 (377)
Q Consensus 166 P~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g-----~-Ga~~li~------- 232 (377)
|.+ |+.- |. .++.+.+++++.|++++..++++|.+++..+||.+ - |++.+..
T Consensus 82 ~~g------------G~~d--g~-~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~ 146 (406)
T TIGR03176 82 VNG------------GNLD--GQ-FGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDV 146 (406)
T ss_pred CCC------------CccC--ch-hhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHH
Confidence 954 3322 11 36778899999999999999999999999999986 1 6665541
Q ss_pred -----------------cCC--------CCCccEEEEEec--CCCCC-cc-eeEeeccccccceeEEEEEEEeeCCCCCC
Q 017084 233 -----------------DGA--------LEDVEAIFAVHV--SHEHP-TG-VIGSRPGPLLAGCGFFHAVISGKKGGAAN 283 (377)
Q Consensus 233 -----------------~g~--------~~~~d~~i~~~~--~~~~p-~g-~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~ 283 (377)
.|+ ..++++.+-+|. .+-.+ .+ .+++..+.. |..+++|+++|+++|+|.
T Consensus 147 ~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~elHieqG~~Le~~g~~igiv~~~~--G~~~~~v~v~GkaaHag~ 224 (406)
T TIGR03176 147 RTIEDAKGIKFVDAMHACGFDLRKAPTVRDDIKAFVELHIEQGCVLESEGQSIGVVNAIV--GQRRYTVNLKGEANHAGT 224 (406)
T ss_pred HhCcCCCCCCHHHHHHHcCCCcccccccccccceEEEEEECCCcchHHCCCeEEEEeecc--cceEEEEEEEEECCCCCC
Confidence 111 013456666775 22111 11 122223332 788999999999999997
Q ss_pred CCC--CCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEe-eCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHH
Q 017084 284 PHR--SVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFN-GGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVL 360 (377)
Q Consensus 284 p~~--g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~-gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~ 360 (377)
|.. +.||+..+++++..++++..+ ...+.++++|.++ +|.+.|+||++|++++|+|+.+.++.+.+.++|++.+
T Consensus 225 ~p~~~r~dAi~aaa~~i~~l~~~~~~---~~~~~~~tvG~I~~gg~~~NvIP~~a~~~~DiR~~~~~~~e~v~~~i~~~i 301 (406)
T TIGR03176 225 TPMSYRRDTVYAFSRICTQSIERAKE---IGDPLVLTFGKVEPVPNTVNVVPGETTFTIDCRHTDAAVLRNFTKELENDM 301 (406)
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHh---cCCCcEEEEEEEEEcCCceEEECCeEEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence 444 389999999999999876432 1234689999998 5789999999999999999999999999999999999
Q ss_pred hhhhhc
Q 017084 361 FFFFFL 366 (377)
Q Consensus 361 ~~~a~~ 366 (377)
++++..
T Consensus 302 ~~ia~~ 307 (406)
T TIGR03176 302 KAIADE 307 (406)
T ss_pred HHHHHH
Confidence 887653
No 63
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.94 E-value=5.4e-25 Score=228.92 Aligned_cols=248 Identities=11% Similarity=0.099 Sum_probs=189.2
Q ss_pred cchHHHHHHHHHHhHcCCCCC-------------cchHHHHHHHHHHHHhCCC-cEEeecCCceEEEEecC-CC-CCeEE
Q 017084 94 PETVDWLKSVRRTIHQNPELA-------------FQEFETSRLLRAELDRMEI-GYKYPLAKTGIRAWVGT-GG-PPFVA 157 (377)
Q Consensus 94 ~~~~~~li~~~~~lv~iPs~s-------------~~E~~~~~~l~~~L~~lG~-~v~~~~~~~~lia~~g~-~~-~~~I~ 157 (377)
+...+++++.+..|-+|+.+. ..+.++++|+.+||+++|+ +++.+ .-.|+++++.+ ++ .|+|+
T Consensus 177 ~~~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D-~~GNl~~~~~g~~~~~~~v~ 255 (591)
T PRK13590 177 PVLGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHID-AVGNVVGRYKGSTPQAKRLL 255 (591)
T ss_pred chHHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeEC-CCCCEEEEecCCCCCCCeEE
Confidence 345778888888898886532 2356899999999999999 88765 34799999844 33 48999
Q ss_pred EecCcCcccCCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCc-----C-cHHH--
Q 017084 158 LRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-----N-GAKR-- 229 (377)
Q Consensus 158 l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g-----~-Ga~~-- 229 (377)
+.+|+||||.+ |+.+|+ .+++++|.+++.|++.+..++++|.|++.+|||.+ . |++.
T Consensus 256 ~gsHlDTV~~g------------G~~DG~---~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~ 320 (591)
T PRK13590 256 TGSHYDTVRNG------------GKYDGR---LGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFLGSGALI 320 (591)
T ss_pred EecccccCCCC------------CCcccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccccCCccccchHHHh
Confidence 99999999953 676666 48889999999999999888999999999999973 1 5553
Q ss_pred ------HHH---------------cCC----C-------CCccEEEEEecCCC-------CCcceeEeeccccccceeEE
Q 017084 230 ------MMA---------------DGA----L-------EDVEAIFAVHVSHE-------HPTGVIGSRPGPLLAGCGFF 270 (377)
Q Consensus 230 ------li~---------------~g~----~-------~~~d~~i~~~~~~~-------~p~g~i~~~~g~~~ag~~~~ 270 (377)
+++ .|+ + +.+++.+-+|.-.+ .+.+.+ .+. .|..++
T Consensus 321 G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~~~gvV---~~~--~G~~~~ 395 (591)
T PRK13590 321 GDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDLPLGIV---TSI--NGSVRY 395 (591)
T ss_pred CCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCceEEE---eee--eccEEE
Confidence 222 111 0 12345555554221 122222 232 278899
Q ss_pred EEEEEeeCCCCCC-CCC-CCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEee-CcccceecCcEEEEEEEecCChh
Q 017084 271 HAVISGKKGGAAN-PHR-SVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNG-GDHLDMIPDAVVIGGTLRAFSNT 347 (377)
Q Consensus 271 ~I~v~G~~~Hs~~-p~~-g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~g-G~~~NvIP~~~~~~~~iR~~~~~ 347 (377)
+|+++|+++|+|. |.. +.||+..+++++..++++... ....+.++|.+++ |.+.|+||++|++++|+|+.+.+
T Consensus 396 ~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~----~~~~v~tVG~i~~~Gg~~NVIP~~a~~~iDiR~~~~e 471 (591)
T PRK13590 396 VGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ----DGDSVGTVGMLEVPGGSINVVPGRCRFSLDIRAPTDA 471 (591)
T ss_pred EEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc----CCCcEEEEEEEEECCCCCceECCEEEEEEEeeCCCHH
Confidence 9999999999995 655 689999999999999886432 1234678999874 66999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhc
Q 017084 348 SFYQLLQRIEEVLFFFFFL 366 (377)
Q Consensus 348 ~~e~~~~~i~~~~~~~a~~ 366 (377)
+.+.+.+++++.+++++..
T Consensus 472 ~~e~v~~~i~~~i~~ia~~ 490 (591)
T PRK13590 472 QRDAMVADVLAELEAICER 490 (591)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 64
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.64 E-value=1.7e-15 Score=123.50 Aligned_cols=100 Identities=20% Similarity=0.279 Sum_probs=90.8
Q ss_pred ceeEEEEEEEeeCCCCCCCCCCCcHHHHHHHHHHHHHhhhccc-----cCCCCCcEEEEEEEeeCcccceecCcEEEEEE
Q 017084 266 GCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE-----ANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGT 340 (377)
Q Consensus 266 g~~~~~I~v~G~~~Hs~~p~~g~nAI~~~~~~i~~l~~~~~~~-----~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~ 340 (377)
|..+++|+++|+++|+|.|+.|.||+..|++++..|+....+. .......+++++.++||.+.|+||++|+++++
T Consensus 5 G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~~~n~ip~~a~~~~~ 84 (111)
T PF07687_consen 5 GVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFRPEEFFPGPPTLNIGSIEGGTAPNVIPDEATLTVD 84 (111)
T ss_dssp EEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTSTHHHCTCTSEEEEEEEEEEESSTTEESSEEEEEEE
T ss_pred CEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccccccccccccceeEeecccCCcCCEECCEEEEEEE
Confidence 7789999999999999999999999999999999998875332 23456688999999999999999999999999
Q ss_pred EecCChhhHHHHHHHHHHHHhhhhh
Q 017084 341 LRAFSNTSFYQLLQRIEEVLFFFFF 365 (377)
Q Consensus 341 iR~~~~~~~e~~~~~i~~~~~~~a~ 365 (377)
+|++|.++.+++.+.|++.+++++.
T Consensus 85 ~R~~p~~~~~~i~~~i~~~~~~~~~ 109 (111)
T PF07687_consen 85 IRYPPGEDLEEIKAEIEAAVEKIAK 109 (111)
T ss_dssp EEESTCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCcchHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999998865
No 65
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.63 E-value=4.8e-15 Score=142.86 Aligned_cols=261 Identities=15% Similarity=0.172 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhHcCCCCCcc--hHHHHHHHHHHHHhCCC-c-----EEe-----e-cCCceEEEEecC-CCCCeEEEecC
Q 017084 97 VDWLKSVRRTIHQNPELAFQ--EFETSRLLRAELDRMEI-G-----YKY-----P-LAKTGIRAWVGT-GGPPFVALRAD 161 (377)
Q Consensus 97 ~~~li~~~~~lv~iPs~s~~--E~~~~~~l~~~L~~lG~-~-----v~~-----~-~~~~~lia~~g~-~~~~~I~l~aH 161 (377)
.+++.++...|++.||+.+. |...+++|...|+++-+ . +.. + .++.||+|-+.+ .++++|++.||
T Consensus 7 ~e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~~k~tvvl~gH 86 (553)
T COG4187 7 SERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGTSKRTVVLHGH 86 (553)
T ss_pred HHHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCCCCceEEEeec
Confidence 57788889999999999764 67899999999998864 1 111 1 156799999844 46799999999
Q ss_pred cCcccCCCCC---CCCccc----------------------ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceE
Q 017084 162 MDALPIQEAV---EWEYKS----------------------KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTV 213 (377)
Q Consensus 162 ~DvVP~~~~~---~w~~~p----------------------~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I 213 (377)
+|||.+.+.. ...|+| ..+++|+|||+. .++++.+++++.+.++ ...+|+|
T Consensus 87 ~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~-~~~~GNl 165 (553)
T COG4187 87 FDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAAR-TDRQGNL 165 (553)
T ss_pred cceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhC-CCCCCcE
Confidence 9999976532 334444 135799999994 7788888888888876 6789999
Q ss_pred EEEEecCCCCcC-cHHHHHHc--CCC--CCccE--EEEEecCCCCCcc---eeEeeccccccceeEEEEEEEeeCCCCCC
Q 017084 214 ILIFQPAEEAGN-GAKRMMAD--GAL--EDVEA--IFAVHVSHEHPTG---VIGSRPGPLLAGCGFFHAVISGKKGGAAN 283 (377)
Q Consensus 214 ~lif~~dEE~g~-Ga~~li~~--g~~--~~~d~--~i~~~~~~~~p~g---~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~ 283 (377)
.|+.+||||.-+ |++..+.. ++. .++++ +|..++..+...| .+. -.|. +|-.---.-+.|...|.|.
T Consensus 166 Lf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryv-YtGt--iGKLLp~f~vvG~etHvG~ 242 (553)
T COG4187 166 LFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYV-YTGT--IGKLLPFFFVVGCETHVGY 242 (553)
T ss_pred EEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEE-Eecc--chhhcceeEEEeeccccCC
Confidence 999999999875 87765432 111 13443 4444443221111 111 1121 1333345678899999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhh---hcc---ccCCCCCcEEEEEEEeeCcccce-ecCcEEEEEEEecCChhhHHHHHHHH
Q 017084 284 PHRSVDPVLAASAAVISLQGL---VSR---EANPLDSQVVSVTYFNGGDHLDM-IPDAVVIGGTLRAFSNTSFYQLLQRI 356 (377)
Q Consensus 284 p~~g~nAI~~~~~~i~~l~~~---~~~---~~~~~~~~~~~v~~i~gG~~~Nv-IP~~~~~~~~iR~~~~~~~e~~~~~i 356 (377)
|..|+||-..+++++..|+.- .++ +..+ +|..+..- +=-...|| -|..+.+.|+.= ....+..++.+++
T Consensus 243 ~f~Gvnan~maSei~~~le~N~~l~dr~~Ge~t~-PPs~L~qk--DlKe~Y~VqTp~~a~~~fN~l-~h~~ta~~~~d~l 318 (553)
T COG4187 243 PFEGVNANFMASEITRRLELNADLADRVDGEITP-PPSCLEQK--DLKESYNVQTPERAWLYFNWL-YHSRTAKELFDRL 318 (553)
T ss_pred cccCCCHHHHHHHHHHHhhcChhhhhhhCCeeCC-CcHhhhhh--hhhhhccccCcchhhhhheeh-hhcCCHHHHHHHH
Confidence 999999999999999988532 121 1111 11111100 01123444 477777777763 3466677777777
Q ss_pred HHHHhhhhh
Q 017084 357 EEVLFFFFF 365 (377)
Q Consensus 357 ~~~~~~~a~ 365 (377)
++.++.++.
T Consensus 319 ~~~a~~A~~ 327 (553)
T COG4187 319 KEEAETAAE 327 (553)
T ss_pred HHHHHHHHH
Confidence 777766543
No 66
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.51 E-value=3.5e-14 Score=126.18 Aligned_cols=76 Identities=34% Similarity=0.626 Sum_probs=66.7
Q ss_pred EEecCcCcccCCCCCCCCccc----ccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC--cH
Q 017084 157 ALRADMDALPIQEAVEWEYKS----KVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GA 227 (377)
Q Consensus 157 ~l~aH~DvVP~~~~~~w~~~p----~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~--Ga 227 (377)
+|+||||||| + .+.|.++| .++|++||||++ +++++++.+++.|++.+..++++|.|+|++|||.|+ |+
T Consensus 1 ll~~H~Dtv~-~-~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~ 78 (189)
T PF01546_consen 1 LLYAHMDTVP-G-PEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGA 78 (189)
T ss_dssp EEEEES-BCS-T-GGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHH
T ss_pred CccccccccC-C-cCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchh
Confidence 6899999999 4 67887776 468999999994 778899999999998889999999999999999996 99
Q ss_pred HHHHHcC
Q 017084 228 KRMMADG 234 (377)
Q Consensus 228 ~~li~~g 234 (377)
+.+++.+
T Consensus 79 ~~l~~~~ 85 (189)
T PF01546_consen 79 KHLLEEG 85 (189)
T ss_dssp HHHHHHC
T ss_pred hhhhhhc
Confidence 9999975
No 67
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.50 E-value=3.6e-13 Score=129.96 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=99.4
Q ss_pred HHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeec-------------------CCceEEEEecCCCCCeEEEec
Q 017084 100 LKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL-------------------AKTGIRAWVGTGGPPFVALRA 160 (377)
Q Consensus 100 li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~-------------------~~~~lia~~g~~~~~~I~l~a 160 (377)
+..+...+-..+.-|..|.++++||+++|+++|++++... ...||++.+.+...+.|++.|
T Consensus 37 ~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~~~~Ill~A 116 (346)
T PRK10199 37 ARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMA 116 (346)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCCCCeEEEEE
Confidence 3334445666777788999999999999999999875310 125799999555468999999
Q ss_pred CcCcccCCCCCCCCcccccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHc
Q 017084 161 DMDALPIQEAVEWEYKSKVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMAD 233 (377)
Q Consensus 161 H~DvVP~~~~~~w~~~p~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~ 233 (377)
|+|||+......|++.. +-++++|++ ++++++|++++.|++. .++++|.|+|+++||.|. |++++++.
T Consensus 117 H~DTV~p~~~~~~~~~~---~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~~~~EE~Gl~GS~~~~~~ 188 (346)
T PRK10199 117 HLDTYAPQSDADVDANL---GGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVATSGEEEGKLGAENLLKR 188 (346)
T ss_pred EcCcCCCCCCCccccCC---CCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEEECCcccCcHHHHHHHHh
Confidence 99999743333343332 227889985 7899999999999864 467899999999999996 99999885
No 68
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.46 E-value=4.6e-13 Score=132.26 Aligned_cols=254 Identities=15% Similarity=0.155 Sum_probs=182.7
Q ss_pred HHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcE-Eee-------cC--Cce-EEEEecCC-C-CCeEEEecCcC
Q 017084 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYP-------LA--KTG-IRAWVGTG-G-PPFVALRADMD 163 (377)
Q Consensus 97 ~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v-~~~-------~~--~~~-lia~~g~~-~-~~~I~l~aH~D 163 (377)
.+++++.+.++++||+.|+.|.+++.++.+|++.+|+.+ .+. .. +.| +.+.+.+. + -|.+.|.+|+|
T Consensus 4 ~~~l~~~F~~~~kI~~~S~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~D 83 (414)
T COG2195 4 MERLLDRFLELVKIPTQSKHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHD 83 (414)
T ss_pred hHHHHHHHHHHeeCCCCCCCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeecccccccccccccccc
Confidence 578999999999999999999999999999999999999 321 11 122 44445443 2 37889999999
Q ss_pred cccCCCC----CCC---------------------Ccccc-----cCCeEeeCC-----ch--HHHHHHHHHHHHHHhcC
Q 017084 164 ALPIQEA----VEW---------------------EYKSK-----VAGKMHACG-----HD--AHVAMLIGAAKILKSRE 206 (377)
Q Consensus 164 vVP~~~~----~~w---------------------~~~p~-----~~G~l~GrG-----~~--g~~a~~l~a~~~L~~~~ 206 (377)
|+|-... ..| .+.|. ....+.-.| .| .+.+.++.++..+++..
T Consensus 84 t~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~~~~ 163 (414)
T COG2195 84 TVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLREKH 163 (414)
T ss_pred ccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHhhcC
Confidence 9962100 011 12331 112233333 33 56777788888888553
Q ss_pred -CCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecCCCCCcceeEeeccccccceeEEEEEEEeeCCCCCC-
Q 017084 207 -HLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN- 283 (377)
Q Consensus 207 -~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~~~~p~g~i~~~~g~~~ag~~~~~I~v~G~~~Hs~~- 283 (377)
..++++|++.|++|||.|+ |+..+.-. .+ .+++.+.++ +.+.|.+....- +...+++++.|+.+|++.
T Consensus 164 ~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a-~f-~a~~ay~iD---Gg~~g~i~~ea~----~~~~~~~~~~g~~~h~~~a 234 (414)
T COG2195 164 PEIPHGGIRGGFSPDEEIGGRGAANKDVA-RF-LADFAYTLD---GGPVGEIPREAF----NAAAVRATIVGPNVHPGSA 234 (414)
T ss_pred ccccccCeEEEecchHHhhhhhhhhccHH-hh-hcceeEecC---CCccCeeeeecc----chheeeeeeeccCcCccch
Confidence 4578999999999999994 88887544 22 478888877 344555543321 345688999999999995
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhccccCCCCCcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhh
Q 017084 284 PHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFF 363 (377)
Q Consensus 284 p~~g~nAI~~~~~~i~~l~~~~~~~~~~~~~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~ 363 (377)
+....||+..+.+++..+.....+ ..+..+.|..+++...|.|.+.+...+.+|.......+...+.++++++..
T Consensus 235 ~~~~i~a~~~a~e~~~~~~~~~~~-----e~t~~~~Gv~~~~~~~~~V~~~s~~~~~iR~~d~~~~~s~~~~~~~~~~~~ 309 (414)
T COG2195 235 KGKMINALLLAAEFILELPLEEVP-----ELTEGPEGVYHLGDSTNSVEETSLNLAIIRDFDNLLFRARKDSMKDVVEEM 309 (414)
T ss_pred HHHHhhHHHhhhhhhhcCCccccc-----ccccccceEEeccccccchhhhhhhhhhhhhcchhHHHHhHHHHHHHHHHH
Confidence 777889999888888776543111 224456788899999999999999999999999988888888888888766
Q ss_pred h
Q 017084 364 F 364 (377)
Q Consensus 364 a 364 (377)
+
T Consensus 310 ~ 310 (414)
T COG2195 310 A 310 (414)
T ss_pred H
Confidence 4
No 69
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.39 E-value=1.1e-11 Score=120.91 Aligned_cols=129 Identities=24% Similarity=0.291 Sum_probs=104.1
Q ss_pred HHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecC-CCCCeEEEecCcCcccC---------
Q 017084 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT-GGPPFVALRADMDALPI--------- 167 (377)
Q Consensus 98 ~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~-~~~~~I~l~aH~DvVP~--------- 167 (377)
+.+++++++|+++|++|+.|.++++++.++|+++|++++.+ ...|+++.+.+ .++|+|+|.||||+|..
T Consensus 3 ~~~~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~ev~~D-~~Gnlia~~~g~~~~~~v~l~aHmDevG~~V~~I~~~G 81 (343)
T TIGR03106 3 DYLTETLLALLAIPSPTGFTDAVVRYVAERLEDLGIEYELT-RRGAIRATLPGREATPARAVVTHLDTLGAMVRELKDNG 81 (343)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEC-CCeEEEEEECCCCCCCeEEEEEeeccccceeeEECCCC
Confidence 45888999999999999999999999999999999998864 56899998744 34589999999999863
Q ss_pred -------CC-----------------C-------C-----------------CCC--------------------ccc--
Q 017084 168 -------QE-----------------A-------V-----------------EWE--------------------YKS-- 177 (377)
Q Consensus 168 -------~~-----------------~-------~-----------------~w~--------------------~~p-- 177 (377)
+. . . .|. .++
T Consensus 82 ~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~lGV~~Gd 161 (343)
T TIGR03106 82 RLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVRLGISVGD 161 (343)
T ss_pred eEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHHcCCCCCC
Confidence 10 0 0 011 000
Q ss_pred ----------ccCCeEeeCCch--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcCcH
Q 017084 178 ----------KVAGKMHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGA 227 (377)
Q Consensus 178 ----------~~~G~l~GrG~~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~Ga 227 (377)
..+|+++||+.| +++++++.+++.|++.+..++.+|.++|+.+||.|.|+
T Consensus 162 ~v~~~~~~~~~~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~ga 223 (343)
T TIGR03106 162 FVAFDPQPEFLANGFIVSRHLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGSGA 223 (343)
T ss_pred EEEECCccEEecCCEEEEEecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCccc
Confidence 134789999987 78999999999999877778999999999999999764
No 70
>PRK09961 exoaminopeptidase; Provisional
Probab=99.12 E-value=2e-09 Score=105.23 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=107.2
Q ss_pred HHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCCCCCeEEEecCcCcccC-----CCC-----
Q 017084 101 KSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPI-----QEA----- 170 (377)
Q Consensus 101 i~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~~~~~I~l~aH~DvVP~-----~~~----- 170 (377)
++++++|+++|++|+.|.++++++.++|+++|.+++++ +..|+++++++.++|+|+|.||||+|+. .+.
T Consensus 3 ~~~L~~L~~~~s~sG~E~~v~~~i~~~l~~~~~~v~~D-~~Gnvi~~~~g~~~~~v~l~aHmDevg~~V~~I~~~G~l~~ 81 (344)
T PRK09961 3 LSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFD-GLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDV 81 (344)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhhCCEEEEC-CCCCEEEEEcCCCCCEEEEEeccceeceEEEEECCCceEEE
Confidence 36799999999999999999999999999999998764 6679999875444579999999999974 000
Q ss_pred ---CCC-------------------------------Ccc---------c-----------------------ccCCeEe
Q 017084 171 ---VEW-------------------------------EYK---------S-----------------------KVAGKMH 184 (377)
Q Consensus 171 ---~~w-------------------------------~~~---------p-----------------------~~~G~l~ 184 (377)
.+| +++ + ..++++.
T Consensus 82 ~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~ 161 (344)
T PRK09961 82 LPVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVM 161 (344)
T ss_pred EeCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEE
Confidence 011 000 0 0124566
Q ss_pred eCCch--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecC
Q 017084 185 ACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVS 248 (377)
Q Consensus 185 GrG~~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~ 248 (377)
|+.-| .++++++.+++.|++. +++.+|.++|+..||.|. |++..... + .+|.++++|.+
T Consensus 162 gkalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~--i-~pd~~I~vDv~ 223 (344)
T PRK09961 162 GKAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRA--V-SPDVAIVLDTA 223 (344)
T ss_pred EeechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhc--c-CCCEEEEEecc
Confidence 66665 6777888888888753 478999999999999995 77766442 3 48999999865
No 71
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.01 E-value=8.4e-09 Score=100.07 Aligned_cols=146 Identities=25% Similarity=0.303 Sum_probs=109.3
Q ss_pred HHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCC-CCCeEEEecCcCcccC-----CCC-
Q 017084 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG-GPPFVALRADMDALPI-----QEA- 170 (377)
Q Consensus 98 ~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~-~~~~I~l~aH~DvVP~-----~~~- 170 (377)
+++++++++|.++|++|+.|.++.+++.++|++++.+++++ ...|++++.++. +.|.|++.||||.|-. .+.
T Consensus 2 ~~~~~~LkeL~~~~gpsG~E~eVr~~~~~el~~~~~ev~~D-~lGnlia~~~g~~g~~~imi~AHmDEiG~mV~~I~~~G 80 (355)
T COG1363 2 EELLELLKELLEAPGPSGYEEEVRDVLKEELEPLGDEVEVD-RLGNLIAKKGGKNGPPKVMIAAHMDEIGFMVKEIEDDG 80 (355)
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHhCCceEEc-CCCcEEEEecCCCCCccEEEEeecceeeeeEEEECCCc
Confidence 46788999999999999999999999999999999998864 567999999763 3366999999999742 000
Q ss_pred -------CCCC------------------c------cc------------------------------------------
Q 017084 171 -------VEWE------------------Y------KS------------------------------------------ 177 (377)
Q Consensus 171 -------~~w~------------------~------~p------------------------------------------ 177 (377)
.+|. + .|
T Consensus 81 ~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v 160 (355)
T COG1363 81 FLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFV 160 (355)
T ss_pred eEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEE
Confidence 0111 0 00
Q ss_pred --------ccCCeEeeCCch--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEe
Q 017084 178 --------KVAGKMHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVH 246 (377)
Q Consensus 178 --------~~~G~l~GrG~~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~ 246 (377)
..+|++-++.-| .++++++.+++.| + +.+++.++.|+|+.-||.|- |++..... + .+|.++.++
T Consensus 161 ~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~--i-~pd~aiavd 235 (355)
T COG1363 161 VFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAFR--I-KPDIAIAVD 235 (355)
T ss_pred EEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccchhhccccc--c-CCCEEEEEe
Confidence 001333344444 6788999999999 4 67899999999999999995 77766432 2 589999888
Q ss_pred cCC
Q 017084 247 VSH 249 (377)
Q Consensus 247 ~~~ 249 (377)
.++
T Consensus 236 ~~~ 238 (355)
T COG1363 236 VTP 238 (355)
T ss_pred ccc
Confidence 654
No 72
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.94 E-value=2e-08 Score=98.21 Aligned_cols=142 Identities=20% Similarity=0.205 Sum_probs=105.4
Q ss_pred HHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecC--CCCCeEEEecCcCcccC-----CCC----
Q 017084 102 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT--GGPPFVALRADMDALPI-----QEA---- 170 (377)
Q Consensus 102 ~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~--~~~~~I~l~aH~DvVP~-----~~~---- 170 (377)
+++++|.++|++|+.|.++++++.++|++++.+++++ .-.|+++.+++ +++|.|++.||||+|+. .+.
T Consensus 2 ~~L~~L~~~~gpSG~E~~v~~~i~~~l~~~~~~v~~D-~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~G~l~ 80 (350)
T TIGR03107 2 NKIKEVTELQGTSGFEHPIRDYLRQDITPLVDQVETD-GLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPDGTFR 80 (350)
T ss_pred hHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCCEEEEC-CCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECCCceEE
Confidence 4589999999999999999999999999999998765 45789998754 33589999999999862 000
Q ss_pred ----CCC------------------C-----------c------cc----------------------------------
Q 017084 171 ----VEW------------------E-----------Y------KS---------------------------------- 177 (377)
Q Consensus 171 ----~~w------------------~-----------~------~p---------------------------------- 177 (377)
.+| + + +.
T Consensus 81 ~~~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd~v~~~ 160 (350)
T TIGR03107 81 VVELGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGDVIVPQ 160 (350)
T ss_pred EEeCCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 001 0 0 00
Q ss_pred -----c-cCCeEeeCCch--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecC
Q 017084 178 -----K-VAGKMHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVS 248 (377)
Q Consensus 178 -----~-~~G~l~GrG~~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~ 248 (377)
. .++++.|+.-| .++++++.+++.|++. +++.++.++|+.-||.|. |++..... + ++|.+|++|.+
T Consensus 161 ~~~~~~~~~~~i~~kalDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~--i-~pD~aI~vDv~ 235 (350)
T TIGR03107 161 TETILTANGKNVISKAWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTK--F-NPDIFFAVDCS 235 (350)
T ss_pred CCeEEEcCCCEEEEeccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhh--C-CCCEEEEEecC
Confidence 0 01234555555 6788889999999753 578899999999999994 88865432 3 58999999875
Q ss_pred C
Q 017084 249 H 249 (377)
Q Consensus 249 ~ 249 (377)
.
T Consensus 236 ~ 236 (350)
T TIGR03107 236 P 236 (350)
T ss_pred C
Confidence 4
No 73
>PRK09864 putative peptidase; Provisional
Probab=98.91 E-value=3.3e-08 Score=96.59 Aligned_cols=140 Identities=16% Similarity=0.169 Sum_probs=103.9
Q ss_pred HHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeecCCceEEEEecCCCCCeEEEecCcCcccC-----CCC-----
Q 017084 101 KSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPI-----QEA----- 170 (377)
Q Consensus 101 i~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~~~~~lia~~g~~~~~~I~l~aH~DvVP~-----~~~----- 170 (377)
++++++|.++|++|+.|.++.+++.++|+.++.+++.+ .-.|+++..| .+++.|+|.||||.|+. .+.
T Consensus 3 ~~~L~~L~~~~g~SG~E~~v~~~l~~~l~~~~dev~~D-~~GNli~~~g-~~~~kvml~AHmDevG~mV~~I~~~G~l~~ 80 (356)
T PRK09864 3 IELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFD-GLGSFVARKG-NKGPKVAVVGHMDEVGFMVTHIDESGFLRF 80 (356)
T ss_pred HHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCEEEEC-CCCCEEEEeC-CCCcEEEEEecccccCEEEEEECCCCeEEE
Confidence 45689999999999999999999999999999998764 4578888764 33479999999999862 000
Q ss_pred ---CCCC------------------c------------------cc----------------------------------
Q 017084 171 ---VEWE------------------Y------------------KS---------------------------------- 177 (377)
Q Consensus 171 ---~~w~------------------~------------------~p---------------------------------- 177 (377)
.+|. + ++
T Consensus 81 ~~lGG~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD~v~~~~~ 160 (356)
T PRK09864 81 TTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGDFISPEAN 160 (356)
T ss_pred EeCCCcCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence 0110 0 00
Q ss_pred ---ccCCeEeeCCch--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecCC
Q 017084 178 ---KVAGKMHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSH 249 (377)
Q Consensus 178 ---~~~G~l~GrG~~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~~ 249 (377)
..++++.|+.-| .++++++.+++.|++ ++.++.++|+.-||.|. |++..... + ++|.+|++|.+.
T Consensus 161 ~~~l~~~~i~~kalDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~--i-~PDiaIavDvt~ 231 (356)
T PRK09864 161 FACWGEDKVVGKALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEH--I-KPDVVIVLDTAV 231 (356)
T ss_pred cEEEcCCEEEEEeCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhc--C-CCCEEEEEeccc
Confidence 001345555555 677888888888853 78999999999999995 88876543 3 589999999754
No 74
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.03 E-value=8.2e-06 Score=72.03 Aligned_cols=82 Identities=24% Similarity=0.446 Sum_probs=59.6
Q ss_pred eEEEecCcCcccCCCCCCCCcccccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHH
Q 017084 155 FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRM 230 (377)
Q Consensus 155 ~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~l 230 (377)
.|++.||+|+++ ...+ + -+..|++ .+++++|++++.|++.+.+++++|+|+|..+||.|. |++++
T Consensus 2 ~ivi~aH~Ds~~-~~~~---------~-~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~ 70 (179)
T PF04389_consen 2 YIVIGAHYDSVG-GDAD---------G-SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAF 70 (179)
T ss_dssp EEEEEEE--BES-CCC----------T-CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHH
T ss_pred EEEEEeecCCCC-CcCC---------C-cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHH
Confidence 689999999998 2111 1 2445553 688999999999999777889999999999999997 99999
Q ss_pred HHc--CCCCCccEEEEEec
Q 017084 231 MAD--GALEDVEAIFAVHV 247 (377)
Q Consensus 231 i~~--g~~~~~d~~i~~~~ 247 (377)
++. ...+++.+++.++.
T Consensus 71 ~~~~~~~~~~~~~~inlD~ 89 (179)
T PF04389_consen 71 VEHDHEELDNIAAVINLDM 89 (179)
T ss_dssp HHHHHCHHHHEEEEEEECS
T ss_pred HHhhhcccccceeEEeccc
Confidence 862 12234667776664
No 75
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.99 E-value=3.4e-05 Score=81.60 Aligned_cols=132 Identities=19% Similarity=0.322 Sum_probs=89.3
Q ss_pred HHHHHHHhHcC-CCCCc---chHHHHHHHHHHHHhCCCcEEe-------e-----------------cCCceEEEEecCC
Q 017084 100 LKSVRRTIHQN-PELAF---QEFETSRLLRAELDRMEIGYKY-------P-----------------LAKTGIRAWVGTG 151 (377)
Q Consensus 100 li~~~~~lv~i-Ps~s~---~E~~~~~~l~~~L~~lG~~v~~-------~-----------------~~~~~lia~~g~~ 151 (377)
.++.+.++.++ |.+.+ +|..+.+++.+++.+..-..+. + .+-.|++.+++++
T Consensus 59 A~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVki~~k 138 (834)
T KOG2194|consen 59 ALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVKISPK 138 (834)
T ss_pred HHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEecCCC
Confidence 44445555555 54443 3457888888887765422111 0 0235788888543
Q ss_pred --CCC-eEEEecCcCcccCCCCCCCCcccccCCeEeeCCch-HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-c
Q 017084 152 --GPP-FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD-AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-G 226 (377)
Q Consensus 152 --~~~-~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~-g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-G 226 (377)
..+ .|++++|+|+||.+ +|-|.| ..++.+|++++.+......+..+|+|+|..+||.+- |
T Consensus 139 ~~~~~~~lLlnaHfDSvpt~---------------~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~g 203 (834)
T KOG2194|consen 139 NGNDKNALLLNAHFDSVPTG---------------PGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLG 203 (834)
T ss_pred CCCccceeeeeccccccCCC---------------CCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhh
Confidence 234 89999999999964 334444 467889999999998888889999999999999994 7
Q ss_pred HHHHHH-cCCCCCccEEEEEe
Q 017084 227 AKRMMA-DGALEDVEAIFAVH 246 (377)
Q Consensus 227 a~~li~-~g~~~~~d~~i~~~ 246 (377)
+..++. +.+-+++.+++-++
T Consensus 204 sH~FItQH~w~~~~ka~INLe 224 (834)
T KOG2194|consen 204 SHAFITQHPWSKNIKAVINLE 224 (834)
T ss_pred cccceecChhhhhhheEEecc
Confidence 777766 33334566666554
No 76
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.084 Score=49.47 Aligned_cols=135 Identities=16% Similarity=0.111 Sum_probs=92.2
Q ss_pred HHhccCcchHHHHHHHHHHhHcCCCCCc--chHHHHHHHHHHHHhCCCcEEee---c-------CCceEEEEecCCCCCe
Q 017084 88 MELARRPETVDWLKSVRRTIHQNPELAF--QEFETSRLLRAELDRMEIGYKYP---L-------AKTGIRAWVGTGGPPF 155 (377)
Q Consensus 88 ~~~~~~~~~~~~li~~~~~lv~iPs~s~--~E~~~~~~l~~~L~~lG~~v~~~---~-------~~~~lia~~g~~~~~~ 155 (377)
+..+..+....++++.++-+. +|.+-+ .-.++.+||.+.|+.+|+.++.+ + +-.|+++++.......
T Consensus 41 lr~i~~~s~~~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A~r~ 119 (338)
T KOG3946|consen 41 LRAINPDSDWNRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNASRY 119 (338)
T ss_pred HHHhcCCCCHHHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCcchh
Confidence 344443455777777755543 444433 34789999999999999998753 1 1257888886554688
Q ss_pred EEEecCcCcccCCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcC----CCCCceEEEEEecCCCCc-------
Q 017084 156 VALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSRE----HLLKGTVILIFQPAEEAG------- 224 (377)
Q Consensus 156 I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~----~~l~~~I~lif~~dEE~g------- 224 (377)
+++.+|||.=-... | ..+-+-++...+++++..++.|.+.- ....-.+.++|--+||.-
T Consensus 120 lVlachydsk~~p~---~-------~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~D 189 (338)
T KOG3946|consen 120 LVLACHYDSKIFPG---G-------MFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPED 189 (338)
T ss_pred eeeecccccccCCC---c-------ceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCcc
Confidence 99999999854321 1 12334455577899999888887532 245568999999999962
Q ss_pred C--cHHHHHHc
Q 017084 225 N--GAKRMMAD 233 (377)
Q Consensus 225 ~--Ga~~li~~ 233 (377)
+ |++++.+.
T Consensus 190 SlYGsRhLA~~ 200 (338)
T KOG3946|consen 190 SLYGSRHLAAK 200 (338)
T ss_pred ccchHHHHHHH
Confidence 2 89998764
No 77
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=95.72 E-value=0.037 Score=55.85 Aligned_cols=63 Identities=32% Similarity=0.385 Sum_probs=49.1
Q ss_pred CCeEEEecCcCcccCCCCCCCCcccccCCeEeeCCch---HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHH
Q 017084 153 PPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD---AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAK 228 (377)
Q Consensus 153 ~~~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~---g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~ 228 (377)
.+.+++.+|+|.+|.+ -|.+ .++++++++++.|+... ++++|.|++...||.|. |+.
T Consensus 208 ~~~~~~~a~~~s~~~~-----------------~GA~DNasGva~llEiAr~l~~~~--p~~~v~f~~~~aEE~Gl~GS~ 268 (435)
T COG2234 208 DSLGLLGAHIDSVPTG-----------------PGADDNASGVAALLELARVLKGNP--PKRTVRFVAFGAEESGLLGSE 268 (435)
T ss_pred CceeeecccccCCcCC-----------------CCcccccHHHHHHHHHHHHHhcCC--CCceEEEEEecchhhcccccH
Confidence 4666677777776642 1232 57889999999999764 89999999999999995 999
Q ss_pred HHHHcC
Q 017084 229 RMMADG 234 (377)
Q Consensus 229 ~li~~g 234 (377)
++...-
T Consensus 269 ~~~~~~ 274 (435)
T COG2234 269 AYVKRL 274 (435)
T ss_pred HHHhcC
Confidence 998863
No 78
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=95.38 E-value=0.048 Score=57.99 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=55.4
Q ss_pred ceEEEEecC-C-CCCeEEEecCcCcccCCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHH---HHhcCCCCCceEEEE
Q 017084 142 TGIRAWVGT-G-GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKI---LKSREHLLKGTVILI 216 (377)
Q Consensus 142 ~~lia~~g~-~-~~~~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~---L~~~~~~l~~~I~li 216 (377)
.|+++.+.| . +++.|++.+|.|..-.+- ++ .+.+++.++..++. ++..+.+|.++|+|+
T Consensus 339 ~NIig~I~Gs~epD~~ViigahrDSw~~Ga-------------~d---p~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~ 402 (702)
T KOG2195|consen 339 QNIIGKIEGSEEPDRYVIIGAHRDSWTFGA-------------ID---PNSGTALLLEIARALSKLKKRGWRPRRTILFA 402 (702)
T ss_pred eeEEEEEecCcCCCeEEEEeccccccccCC-------------cC---CCccHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 689999944 3 679999999999876431 00 01234555554444 446789999999999
Q ss_pred EecCCCCcC-cHHHHHHc
Q 017084 217 FQPAEEAGN-GAKRMMAD 233 (377)
Q Consensus 217 f~~dEE~g~-Ga~~li~~ 233 (377)
.-.+||.|. |+-.+++.
T Consensus 403 sWdAeEfGliGStE~~E~ 420 (702)
T KOG2195|consen 403 SWDAEEFGLLGSTEWAEE 420 (702)
T ss_pred EccchhccccccHHHHHH
Confidence 999999997 88888774
No 79
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=94.91 E-value=0.09 Score=50.39 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=51.3
Q ss_pred cCCeEeeCCch--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC-cHHHHHHcCCCCCccEEEEEecC
Q 017084 179 VAGKMHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVS 248 (377)
Q Consensus 179 ~~G~l~GrG~~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~-Ga~~li~~g~~~~~d~~i~~~~~ 248 (377)
.++++.|+.-| .++++++.+++.|++. .++.++.++|+.-||.|. |+...... + .+|.+++++.+
T Consensus 124 ~~~~i~gkalDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~--i-~PD~ai~vD~~ 191 (292)
T PF05343_consen 124 GNGRIVGKALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFR--I-KPDIAIAVDVT 191 (292)
T ss_dssp TTTEEEETTHHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHH--H--CSEEEEEEEE
T ss_pred CCCEEEEEeCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeecccc--c-CCCEEEEEeee
Confidence 45678999987 6788899999999864 456999999999999996 88877653 2 47999888864
No 80
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=93.45 E-value=0.45 Score=44.08 Aligned_cols=66 Identities=24% Similarity=0.364 Sum_probs=49.8
Q ss_pred CeEEEecCcCcccCCCCCCCCcccccCCeEeeCCch---HHHHHHHHHHHHHHhc---CCCCCceEEEEEecCCCCcC-c
Q 017084 154 PFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD---AHVAMLIGAAKILKSR---EHLLKGTVILIFQPAEEAGN-G 226 (377)
Q Consensus 154 ~~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~---g~~a~~l~a~~~L~~~---~~~l~~~I~lif~~dEE~g~-G 226 (377)
|.|++.+.||+.-.-. +. +.|++ .++.++|+++++|.+. ...++++|.|+|..+|..|- |
T Consensus 1 ~iIlv~armDs~s~F~-----------~~--s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiG 67 (234)
T PF05450_consen 1 PIILVVARMDSFSFFH-----------DL--SPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIG 67 (234)
T ss_pred CEEEEEecccchhccc-----------CC--CCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccc
Confidence 6789999999876321 22 34443 6788889999999754 23678999999999999985 8
Q ss_pred HHHHHH
Q 017084 227 AKRMMA 232 (377)
Q Consensus 227 a~~li~ 232 (377)
...|+-
T Consensus 68 S~R~vy 73 (234)
T PF05450_consen 68 SSRFVY 73 (234)
T ss_pred hHHHHH
Confidence 887753
No 81
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=92.92 E-value=0.91 Score=45.15 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=70.9
Q ss_pred HHHHHHHHhCCCcEEeec---------CCceEEEEec-C------C-CCCeEEEecCcCcccCCCCCCCCcccccCCeEe
Q 017084 122 RLLRAELDRMEIGYKYPL---------AKTGIRAWVG-T------G-GPPFVALRADMDALPIQEAVEWEYKSKVAGKMH 184 (377)
Q Consensus 122 ~~l~~~L~~lG~~v~~~~---------~~~~lia~~g-~------~-~~~~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~ 184 (377)
+.+..-+...|+....-. --.|+.+++. + + .-|+|++.+||||.-+-+ + +
T Consensus 165 ~~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap-----------~--l 231 (555)
T KOG2526|consen 165 QHLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAP-----------G--L 231 (555)
T ss_pred HHHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCC-----------C--C
Confidence 445556666777665311 1257888874 1 1 239999999999976432 1 2
Q ss_pred eCCch---HHHHHHHHHHHHHHhcC----CCCCceEEEEEecCCCCc-CcHHHHHHc---CCCCCccEEEEEec
Q 017084 185 ACGHD---AHVAMLIGAAKILKSRE----HLLKGTVILIFQPAEEAG-NGAKRMMAD---GALEDVEAIFAVHV 247 (377)
Q Consensus 185 GrG~~---g~~a~~l~a~~~L~~~~----~~l~~~I~lif~~dEE~g-~Ga~~li~~---g~~~~~d~~i~~~~ 247 (377)
--|+| .++.++|..++.+.... -..+.++.|+.+.+--.- .|++++++. -+-+++|++++++.
T Consensus 232 svgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdt 305 (555)
T KOG2526|consen 232 SVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDT 305 (555)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhhh
Confidence 22333 45668888888877532 134779999998654422 399998872 11126899988764
No 82
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=88.98 E-value=5.2 Score=41.08 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeec------CCceEEEEecCC--CCCeEEEecCc-C---
Q 017084 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL------AKTGIRAWVGTG--GPPFVALRADM-D--- 163 (377)
Q Consensus 96 ~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~------~~~~lia~~g~~--~~~~I~l~aH~-D--- 163 (377)
...+-+.+.|+|++.|.--......++++.+.+++.|++++..+ .+-|.+.-.|.+ ..|.++..-+. +
T Consensus 169 ~~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~prli~l~Y~g~~~~ 248 (483)
T PRK00913 169 AIAEGVNLARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSANPPRLIVLEYKGGKKP 248 (483)
T ss_pred HHHHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCCCCeEEEEEECCCCCe
Confidence 46778899999999997666677889999999999999988632 233333333332 23444444332 1
Q ss_pred cccCCCCCCCCccc----ccC-CeEee-CCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC
Q 017084 164 ALPIQEAVEWEYKS----KVA-GKMHA-CGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN 225 (377)
Q Consensus 164 vVP~~~~~~w~~~p----~~~-G~l~G-rG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~ 225 (377)
++-++. +.+|+. .+. +.|++ ++.-++.|+.+++++++.+. +++.+|+.+....|=.-+
T Consensus 249 i~LVGK--GITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~l--kl~vnV~~v~~l~ENm~~ 312 (483)
T PRK00913 249 IALVGK--GLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAEL--KLPVNVVGVVAACENMPS 312 (483)
T ss_pred EEEEcC--ceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHc--CCCceEEEEEEeeccCCC
Confidence 122222 444543 111 12332 22227889999999999975 468899999988887543
No 83
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=88.34 E-value=4.5 Score=39.04 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=69.2
Q ss_pred HHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeec------CCce---------------EEEEe-cCC--CCCeE
Q 017084 101 KSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL------AKTG---------------IRAWV-GTG--GPPFV 156 (377)
Q Consensus 101 i~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~------~~~~---------------lia~~-g~~--~~~~I 156 (377)
+.+.|+|++.|.--......++++++.+++.|++++... .+.| ++.+| |++ ..++|
T Consensus 1 vn~aRdL~n~P~n~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i 80 (311)
T PF00883_consen 1 VNLARDLVNTPPNILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPI 80 (311)
T ss_dssp HHHHHHHHHS-TTTSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEE
T ss_pred ChHHHhhhCCChhhcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccE
Confidence 357899999998777788899999999999998887521 1111 33344 222 23455
Q ss_pred EEecCcCcccCCCCCCCCccc----cc-CCeEee-CCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCC
Q 017084 157 ALRADMDALPIQEAVEWEYKS----KV-AGKMHA-CGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEA 223 (377)
Q Consensus 157 ~l~aH~DvVP~~~~~~w~~~p----~~-~G~l~G-rG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~ 223 (377)
+|.|- +.+|+. .+ .+.|++ ++.-++.++.+++++++.+. +++.+|..+....|=.
T Consensus 81 ~LVGK----------GiTFDtGG~~lKp~~~M~~Mk~DM~GAAaV~ga~~aia~l--k~~vnV~~~l~~~EN~ 141 (311)
T PF00883_consen 81 ALVGK----------GITFDTGGLSLKPSGGMEGMKYDMGGAAAVLGAMRAIAKL--KLPVNVVAVLPLAENM 141 (311)
T ss_dssp EEEEE----------EEEEEE-TTSSSCSTTGGGGGGGGHHHHHHHHHHHHHHHC--T-SSEEEEEEEEEEE-
T ss_pred EEEcc----------eEEEecCCccCCCCcchhhcccCcchHHHHHHHHHHHHHc--CCCceEEEEEEccccc
Confidence 55432 334432 11 122332 22237888999999999975 4568888888877653
No 84
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=87.50 E-value=10 Score=38.77 Aligned_cols=128 Identities=14% Similarity=0.113 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeec------CCceEEEEecCC--CCCeEEEecCcCcccC
Q 017084 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL------AKTGIRAWVGTG--GPPFVALRADMDALPI 167 (377)
Q Consensus 96 ~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~------~~~~lia~~g~~--~~~~I~l~aH~DvVP~ 167 (377)
...+-+.+.|+|++-|.=-......++++.+.+++.|++++..+ -+.|.+.-.+.+ ..|.++..-+...-+.
T Consensus 152 ~~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~p~lv~l~Y~g~~~~ 231 (468)
T cd00433 152 AIAEGVNLARDLVNTPANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKGKGAS 231 (468)
T ss_pred HHHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCCCCEEEEEEECCCCCC
Confidence 46778889999999997666777899999999999999988632 233433334332 2355554444322110
Q ss_pred CC-----CCCCCccc----ccC-CeEeeCCch-HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC
Q 017084 168 QE-----AVEWEYKS----KVA-GKMHACGHD-AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN 225 (377)
Q Consensus 168 ~~-----~~~w~~~p----~~~-G~l~GrG~~-g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~ 225 (377)
.. .-+.+|+. .+. .-|++-=.| ++.|+.+++++++.+.+ ++.+|+.+....|=.-+
T Consensus 232 ~~~i~LVGKGiTFDsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~--~~vnV~~i~~~~EN~is 298 (468)
T cd00433 232 KKPIALVGKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELK--LPVNVVGVLPLAENMIS 298 (468)
T ss_pred CCcEEEEcCceEecCCCccccCccChhhccccchhHHHHHHHHHHHHHcC--CCceEEEEEEeeecCCC
Confidence 00 01334443 111 123222223 78889999999999754 58889988888886543
No 85
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=85.32 E-value=12 Score=38.87 Aligned_cols=126 Identities=13% Similarity=0.036 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEE-eec------CCc-eEEEEecCCCC-CeEEEecCcCccc
Q 017084 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYK-YPL------AKT-GIRAWVGTGGP-PFVALRADMDALP 166 (377)
Q Consensus 96 ~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~-~~~------~~~-~lia~~g~~~~-~~I~l~aH~DvVP 166 (377)
...+-+.+.|+|++-|.--......++++.+.+++.|++++ ..+ .+. ++++.=.++.. |.++.. +|.--+
T Consensus 210 ~ia~~vn~ARdLvn~P~N~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~pPrli~L-~Y~g~~ 288 (569)
T PTZ00412 210 IIGHCVNEARNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVVF-EYIGNP 288 (569)
T ss_pred HHHHHHHHHHHhccCChhhcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCCCCEEEEE-EeCCCC
Confidence 46678889999999997656667788999988888999986 421 233 34444222223 444443 332101
Q ss_pred CCC------CCCCCccc----ccC-CeEe-eCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCc
Q 017084 167 IQE------AVEWEYKS----KVA-GKMH-ACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG 224 (377)
Q Consensus 167 ~~~------~~~w~~~p----~~~-G~l~-GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g 224 (377)
..+ .-+.+|+. .+. +.|+ -++..++.++.++++.++.+. +++.+|+.+....|=.-
T Consensus 289 ~~~~~iaLVGKGITFDSGGisLKP~~~M~~MK~DMgGAAaVlga~~AiA~L--klpvnVv~iiplaENm~ 356 (569)
T PTZ00412 289 RSSAATALVGKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKL--QLPVNVVAAVGLAENAI 356 (569)
T ss_pred CCCCcEEEEcCceEEcCCCCCCCCccChhhhhccchhHHHHHHHHHHHHHc--CCCeEEEEEEEhhhcCC
Confidence 000 01344443 111 1222 222227888999999999875 46789998888888654
No 86
>PRK05015 aminopeptidase B; Provisional
Probab=84.56 E-value=15 Score=37.02 Aligned_cols=125 Identities=18% Similarity=0.099 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhC---CCcEEeec------CCceEEEEecCC-CCCeEEEecCcCccc
Q 017084 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRM---EIGYKYPL------AKTGIRAWVGTG-GPPFVALRADMDALP 166 (377)
Q Consensus 97 ~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~l---G~~v~~~~------~~~~lia~~g~~-~~~~I~l~aH~DvVP 166 (377)
.-+.+.+.|+|++-|.--......++...++++++ +++++... .+.+.+.-.|.+ ..|+.++.-+|. |
T Consensus 99 ~~~~~~~aRdLvn~P~n~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~~pP~lv~L~Y~--~ 176 (424)
T PRK05015 99 RLKIIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSERPPVLLALDYN--P 176 (424)
T ss_pred HHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCCCCCEEEEEEec--C
Confidence 44578889999999976666667788888888876 46666421 234444444333 234444433432 2
Q ss_pred CCCC----------CCCCccc----ccC-CeEee-CCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC
Q 017084 167 IQEA----------VEWEYKS----KVA-GKMHA-CGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN 225 (377)
Q Consensus 167 ~~~~----------~~w~~~p----~~~-G~l~G-rG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~ 225 (377)
.++. .+.+|++ .+. +.|.+ +..-++.++.++++.++.+. .++.+|..++...|=.-+
T Consensus 177 ~g~~~~~v~~aLVGKGITFDSGG~sLKps~~M~~MK~DMgGAAaV~ga~~~a~~~--~l~~nV~~il~~aENmis 249 (424)
T PRK05015 177 TGDPDAPVYACLVGKGITFDSGGYSIKPSAGMDSMKSDMGGAATVTGALALAITR--GLNKRVKLFLCCAENLIS 249 (424)
T ss_pred CCCCCCCeeEEEecCceEecCCCccCCCCcCHHHhhcchhHHHHHHHHHHHHHhc--CCCceEEEEEEecccCCC
Confidence 2111 1233432 111 11221 22227788889998877765 468899999998887544
No 87
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=76.52 E-value=5.2 Score=40.96 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=38.4
Q ss_pred CcEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhh
Q 017084 314 SQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFF 362 (377)
Q Consensus 314 ~~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~ 362 (377)
..++|++.+.++ |+++.+++++|+++..+.+++.+.+++.++.
T Consensus 337 ~~t~n~g~i~~~------~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~~ 379 (477)
T TIGR01893 337 ESSLNLGVVKTK------ENKVIFTFLIRSSVESDKDYVTEKIESIAKL 379 (477)
T ss_pred EeeeeEEEEEEc------CCEEEEEEEeCCCCchhHHHHHHHHHHHhhh
Confidence 456788888876 8999999999999999999999999999874
No 88
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=74.98 E-value=45 Score=34.33 Aligned_cols=130 Identities=12% Similarity=0.026 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCCCcEEeec------CCceEEEEec-CC-CCCeEEEecCcCccc
Q 017084 95 ETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL------AKTGIRAWVG-TG-GPPFVALRADMDALP 166 (377)
Q Consensus 95 ~~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG~~v~~~~------~~~~lia~~g-~~-~~~~I~l~aH~DvVP 166 (377)
..+.+-..+.|+|..-|.=-......++++.+++...|..++... -.-|.+.-.+ +. ..|.++...|.+.=|
T Consensus 186 ~~~~~~~~lar~l~d~PaN~Mtp~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~~pP~ll~lsY~g~~~ 265 (513)
T KOG2597|consen 186 LFKAAAQNLARRLGDTPANRMTPTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASCEPPRLLELSYKGTSG 265 (513)
T ss_pred HHHHHHHHHHHHhccCChhhcCHHHHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccCCCCEEEEEEEcCCCC
Confidence 346777888899988886556667899999999999998877532 1223333332 22 236666676766644
Q ss_pred CCCC-----CCCCccc----ccC-CeEe-eCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcCc
Q 017084 167 IQEA-----VEWEYKS----KVA-GKMH-ACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNG 226 (377)
Q Consensus 167 ~~~~-----~~w~~~p----~~~-G~l~-GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~G 226 (377)
.... .+.+|+. .+. +.|. -||..++.|..+++++++.+.+ ++-++.+++.-.|-.-+|
T Consensus 266 ~~~~i~lvGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~--~~in~~~v~plcENm~sg 334 (513)
T KOG2597|consen 266 ADKTILLVGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLS--LPINVHAVLPLCENMPSG 334 (513)
T ss_pred CcceEEEEecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcC--CCCceEEEEeeeccCCCc
Confidence 3221 2444543 111 1222 2333377888899999988754 558899999988876543
No 89
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=71.04 E-value=61 Score=33.39 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhCC-CcEEeec-------CCceEEEEe-cCCCCCeEEE---ecCcC
Q 017084 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRME-IGYKYPL-------AKTGIRAWV-GTGGPPFVAL---RADMD 163 (377)
Q Consensus 96 ~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~lG-~~v~~~~-------~~~~lia~~-g~~~~~~I~l---~aH~D 163 (377)
..-+-+.+.|+|++.|.--......++. ++.|++.+ ++++..+ +-+.+++.= |+...|.++. .++=+
T Consensus 165 ai~~~v~~aRdLvN~P~n~l~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y~g~~~ 243 (485)
T COG0260 165 AIAEGVNLARDLVNTPANILTPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGKGK 243 (485)
T ss_pred HHHHHHHHHHHHhhCCcccCCHHHHHHH-HHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCCCCCeEEEEEcCCCCC
Confidence 3667889999999999866666677777 77777776 6666421 223344332 2212343332 33322
Q ss_pred -cccCC-CCCCCCccc----ccCC-eEee-CCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC
Q 017084 164 -ALPIQ-EAVEWEYKS----KVAG-KMHA-CGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN 225 (377)
Q Consensus 164 -vVP~~-~~~~w~~~p----~~~G-~l~G-rG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~ 225 (377)
-.|.. -.-+.+|++ .+.+ -|+. +..-++.|+.++++.++.+. +++.+|+.+....|=.-+
T Consensus 244 ~~~~iaLVGKGitFDsGGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l--~l~vnv~~vl~~~ENm~~ 311 (485)
T COG0260 244 AKKPIALVGKGITFDSGGISIKPAAGMDTMKYDMGGAAAVLGAMRALAEL--KLPVNVVGVLPAVENMPS 311 (485)
T ss_pred CCceEEEEcCceeecCCCcccCCccchhhhhcccchHHHHHHHHHHHHHc--CCCceEEEEEeeeccCCC
Confidence 22210 012445553 1211 1221 12227888999999999976 467889888888876543
No 90
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=65.35 E-value=5.6 Score=38.09 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=17.3
Q ss_pred ceEEEEecC-CCCCeEEEecCcCccc
Q 017084 142 TGIRAWVGT-GGPPFVALRADMDALP 166 (377)
Q Consensus 142 ~~lia~~g~-~~~~~I~l~aH~DvVP 166 (377)
.|+++++++ .++|.|++.||||-+-
T Consensus 1 Gnvi~~~~g~~~~~~vmi~AHmDEiG 26 (292)
T PF05343_consen 1 GNVIARKKGKEGGPKVMIAAHMDEIG 26 (292)
T ss_dssp S-EEEEECSSCSSSEEEEEEE--B-E
T ss_pred CcEEEEECCCCCCceEEEEEccceee
Confidence 389999966 3479999999999985
No 91
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=50.41 E-value=1.3e+02 Score=28.10 Aligned_cols=89 Identities=19% Similarity=0.353 Sum_probs=53.8
Q ss_pred CCCeEEEecCcCcccCCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHH--hcCCCCCceEEEEEecCCCC------
Q 017084 152 GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILK--SREHLLKGTVILIFQPAEEA------ 223 (377)
Q Consensus 152 ~~~~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~--~~~~~l~~~I~lif~~dEE~------ 223 (377)
+.|++.+.|-+--+-+. |..-|.. -..||.++++..|++.+. +.|..++++|++.-.-+--.
T Consensus 30 ~aptlGIiGRLGgigAR--------P~~iGlV--SDaDGAi~ala~a~KL~~M~~kGd~L~GDVii~ThIcp~Apt~PH~ 99 (276)
T PF06675_consen 30 SAPTLGIIGRLGGIGAR--------PERIGLV--SDADGAIAALAAALKLLDMQAKGDVLPGDVIITTHICPDAPTRPHD 99 (276)
T ss_pred CCCeeEEEeeccccccc--------ccceeee--ecCchHHHHHHHHHHHHHHHHcCCccCCcEEEEEecCCCCCCCCCC
Confidence 45899998776554431 2111221 112356666666666554 56788999999876544432
Q ss_pred -----cC--cHHHHHHcCCCCCccEEEEEecCCC
Q 017084 224 -----GN--GAKRMMADGALEDVEAIFAVHVSHE 250 (377)
Q Consensus 224 -----g~--Ga~~li~~g~~~~~d~~i~~~~~~~ 250 (377)
++ +...|.+.-.....|+++.+|.+.+
T Consensus 100 PvpFM~sPv~~~~~n~~EV~p~mdAILSiDTTKG 133 (276)
T PF06675_consen 100 PVPFMGSPVDMATMNRHEVDPEMDAILSIDTTKG 133 (276)
T ss_pred CcccccCccCHHHHHHhhcCcccceEEEEecCCC
Confidence 22 6666666544446899999887653
No 92
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=48.72 E-value=38 Score=33.38 Aligned_cols=71 Identities=23% Similarity=0.191 Sum_probs=44.5
Q ss_pred ceEEEEecCCCCCeEEEecCcCcccCCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCC
Q 017084 142 TGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAE 221 (377)
Q Consensus 142 ~~lia~~g~~~~~~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dE 221 (377)
+++|+.-++. .+++++.+|.|+=..+..+ . -.+++..+.++..|...+. ...++..+.|
T Consensus 179 y~~Ia~~~~e-n~vv~i~AH~DHW~~G~tD---------N-------~lg~~~AV~~~~~lr~~~~----~~~lv~FtAE 237 (486)
T COG4882 179 YNVIAVDGGE-NGVVLIGAHLDHWYTGFTD---------N-------ILGVAQAVETAGRLRGRGL----AAGLVVFTAE 237 (486)
T ss_pred EEEEEecCCC-CCceEEeechhhhhhcccc---------h-------hhhHHHHHHHHHHHhhcCc----ceeEEEEecc
Confidence 5677665544 5799999999987754311 1 1456667777777775543 3445555577
Q ss_pred CCcC----------cHHHHHHc
Q 017084 222 EAGN----------GAKRMMAD 233 (377)
Q Consensus 222 E~g~----------Ga~~li~~ 233 (377)
|.|+ |++.+++.
T Consensus 238 E~g~p~~~sfyWa~GSr~~lk~ 259 (486)
T COG4882 238 EHGMPGMASFYWAAGSRGLLKE 259 (486)
T ss_pred ccCCCCCcceeecccchHHHhh
Confidence 7652 67777663
No 93
>PRK02256 putative aminopeptidase 1; Provisional
Probab=41.85 E-value=42 Score=34.40 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=28.2
Q ss_pred CCeEeeCCch--HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC
Q 017084 180 AGKMHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN 225 (377)
Q Consensus 180 ~G~l~GrG~~--g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~ 225 (377)
+..+.|.+-| .++.+++.++..+. .++.++.++|+..||.|+
T Consensus 251 ~efI~s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs 294 (462)
T PRK02256 251 RSLIGAYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGS 294 (462)
T ss_pred cceeeccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCC
Confidence 4577777777 33444444444332 456799999999999994
No 94
>PRK02813 putative aminopeptidase 2; Provisional
Probab=29.18 E-value=73 Score=32.29 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=29.2
Q ss_pred CCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcC----cHHH
Q 017084 180 AGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN----GAKR 229 (377)
Q Consensus 180 ~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~----Ga~~ 229 (377)
++++.|.+-|.-+ ....++++|.+... +.++.++|+..||.|+ |+..
T Consensus 225 ~e~i~s~~lDnr~-~~~~~l~al~~~~~--~~~~~~~~~d~EEVGs~~~~GA~s 275 (428)
T PRK02813 225 GEFISSGRLDNLS-SCHAGLEALLAAAS--DATNVLAAFDHEEVGSATKQGADS 275 (428)
T ss_pred CCEEEEecchhHH-HHHHHHHHHHhcCC--CCeEEEEEEecCccCCCCCcccCc
Confidence 3567777777332 22333344443222 6799999999999983 6663
No 95
>PRK02256 putative aminopeptidase 1; Provisional
Probab=26.33 E-value=2.4e+02 Score=28.92 Aligned_cols=52 Identities=12% Similarity=-0.037 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHHHHhCCCcEE-e------------ecCCceEEEEe-cCCC--CCeEEEecCcCccc
Q 017084 115 FQEFETSRLLRAELDRMEIGYK-Y------------PLAKTGIRAWV-GTGG--PPFVALRADMDALP 166 (377)
Q Consensus 115 ~~E~~~~~~l~~~L~~lG~~v~-~------------~~~~~~lia~~-g~~~--~~~I~l~aH~DvVP 166 (377)
..++.+.+++.+.|++.||.-- . ..++..++|.. |+.. ...-+..+|.|.=.
T Consensus 39 ptp~Hav~~~~~~L~~~GF~el~e~~~l~~g~kyy~~r~~ssliAf~ig~~~~~~g~~iv~aHtDsP~ 106 (462)
T PRK02256 39 KTEREAVKEIIELAEEKGFINLEEIIGLKPGDKVYAVNRGKSVALAVIGKEPLEEGLNIIGAHIDSPR 106 (462)
T ss_pred CCHHHHHHHHHHHHHHcCCeecccccccCCCCEEEEEcCCCEEEEEEeCCCCCCCceEEEEEecCCCC
Confidence 3568899999999999999631 1 01223455554 5542 23568899999853
No 96
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=24.98 E-value=1.6e+02 Score=30.21 Aligned_cols=43 Identities=9% Similarity=0.065 Sum_probs=34.0
Q ss_pred cEEEEEEEeeCcccceecCcEEEEEEEecCChhhHHHHHHHHHHHHhhh
Q 017084 315 QVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVLFFF 363 (377)
Q Consensus 315 ~~~~v~~i~gG~~~NvIP~~~~~~~~iR~~~~~~~e~~~~~i~~~~~~~ 363 (377)
++.|++++.- --++|++.+++|+++..+.+++.+++++.++..
T Consensus 344 ~S~Nlg~v~~------~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~~ 386 (485)
T PRK15026 344 TSLNVGVVTM------TDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLA 386 (485)
T ss_pred eeeEEEEEEE------eCCEEEEEEEecCCCchHHHHHHHHHHHHHHHc
Confidence 4566666543 347899999999999999999999998886543
No 97
>PRK02813 putative aminopeptidase 2; Provisional
Probab=24.74 E-value=2.5e+02 Score=28.46 Aligned_cols=52 Identities=15% Similarity=0.136 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHHHHhCCCcEEe-----e----------cCCceEEEEe-cCCC---CCeEEEecCcCccc
Q 017084 115 FQEFETSRLLRAELDRMEIGYKY-----P----------LAKTGIRAWV-GTGG---PPFVALRADMDALP 166 (377)
Q Consensus 115 ~~E~~~~~~l~~~L~~lG~~v~~-----~----------~~~~~lia~~-g~~~---~~~I~l~aH~DvVP 166 (377)
..++.+.+++.+.|++.||.--. . .++..++|.. |+.+ ....++.||.|.-.
T Consensus 19 ~t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~aH~DsP~ 89 (428)
T PRK02813 19 PSPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVGAHTDSPG 89 (428)
T ss_pred CCHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEEEeccCCC
Confidence 45688999999999999996321 0 1223466554 5543 24678899999754
No 98
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=24.02 E-value=1.1e+02 Score=23.54 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=24.3
Q ss_pred cchHHHHHHHHHHhHcCCCCCcchHHHHHHHHHHHHhC
Q 017084 94 PETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRM 131 (377)
Q Consensus 94 ~~~~~~li~~~~~lv~iPs~s~~E~~~~~~l~~~L~~l 131 (377)
++.+++++++..++.+.- .++.++|++|+++|.+.
T Consensus 15 ~~~~~~~~~~~~~a~~~~---~~~~eiA~~iK~~lD~~ 49 (89)
T PF01221_consen 15 EEMQEEAIELAKEALKKY---QDEKEIAEFIKQELDKK 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC---CcHHHHHHHHHHHHhcc
Confidence 344566666666655422 26788999999999887
No 99
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=23.34 E-value=1.4e+02 Score=30.63 Aligned_cols=46 Identities=11% Similarity=-0.042 Sum_probs=24.6
Q ss_pred CCeEeeCCchH--HHHHHHHHHHHHHhcCCCCCceEEE-EEecCCCCcC
Q 017084 180 AGKMHACGHDA--HVAMLIGAAKILKSREHLLKGTVIL-IFQPAEEAGN 225 (377)
Q Consensus 180 ~G~l~GrG~~g--~~a~~l~a~~~L~~~~~~l~~~I~l-if~~dEE~g~ 225 (377)
+..+.|.+-|. .+.+++.++..++....+.+..+.+ +++..||.|+
T Consensus 242 ~e~i~s~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs 290 (465)
T PTZ00371 242 EEFISSPRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGS 290 (465)
T ss_pred CCeEEEecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCC
Confidence 46788888773 3334444444332110022334444 4489999995
No 100
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=3.7e+02 Score=28.31 Aligned_cols=90 Identities=12% Similarity=0.219 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCCcEEeec---------CCceEEEEecC---CCCCeEEEecCcCcccCCCCCCCCcccccCCeEeeCCch
Q 017084 122 RLLRAELDRMEIGYKYPL---------AKTGIRAWVGT---GGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD 189 (377)
Q Consensus 122 ~~l~~~L~~lG~~v~~~~---------~~~~lia~~g~---~~~~~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~ 189 (377)
.+....+++-|.+++... ++.|+++.+.. ++...+++ +||-+..++ + .+
T Consensus 92 ~~~~~~~q~FGl~t~~~n~~~~P~e~y~G~NvyGilRAPRgdgtEsivl-----~vP~~~~~~--------~------~~ 152 (617)
T KOG3566|consen 92 AWAEVSMQEFGLETHTQNYSNGPFEEYSGENVYGILRAPRGDGTESIVL-----VVPYGRSSG--------S------NS 152 (617)
T ss_pred hHHHHHHHHhCccccccCccCCchhhcCCceEEEEEecCCCCCcceEEE-----EEecccCCC--------c------ch
Confidence 346677777788876432 26789999843 23467777 466332110 1 13
Q ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEecCCCCcCcHHHHHHc
Q 017084 190 AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMAD 233 (377)
Q Consensus 190 g~~a~~l~a~~~L~~~~~~l~~~I~lif~~dEE~g~Ga~~li~~ 233 (377)
.+++.+++.++.+++. .-+..+|+++|+-++- -|...++++
T Consensus 153 ~~v~l~lsla~~f~r~-~yWsKDII~v~~d~~~--~g~~AwLea 193 (617)
T KOG3566|consen 153 ASVALLLSLADYFSRW-VYWSKDIIFVFTDGPA--LGLDAWLEA 193 (617)
T ss_pred hHHHHHHHHHHHhcCC-eeecccEEEEEeCCcc--ccHHHHHHH
Confidence 4556666666766643 4578999999996632 267776664
No 101
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=21.01 E-value=2.6e+02 Score=29.00 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=48.2
Q ss_pred CCceEEEEecC---CCCCeEEEecCcCcccCCCCCCCCcccccCCeEeeCCchHHHHHHHHHHHHHHhcCCCCCceEEEE
Q 017084 140 AKTGIRAWVGT---GGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILI 216 (377)
Q Consensus 140 ~~~~lia~~g~---~~~~~I~l~aH~DvVP~~~~~~w~~~p~~~G~l~GrG~~g~~a~~l~a~~~L~~~~~~l~~~I~li 216 (377)
.+.|+++.+.. ++...+++..-++... +. ...++++.+++.++.+++.. -+..+|+|+
T Consensus 2 ~G~nvy~i~rapR~d~tEaivl~~~~~~~~--------------~~----~n~~~v~l~lal~~~~~~~~-~wsKDii~l 62 (504)
T PF04114_consen 2 SGTNVYGILRAPRGDGTEAIVLVVPWRDSD--------------GE----YNAGGVALALALARYFRRQS-YWSKDIIFL 62 (504)
T ss_pred CceEEEEEEecCCCCCceeEEEEEecCCCC--------------cc----cchhhHHHHHHHHHHhhhch-hhhccEEEE
Confidence 35788888832 2347788875544321 10 01256788889999998764 468999999
Q ss_pred EecCCCCcCcHHHHHHc
Q 017084 217 FQPAEEAGNGAKRMMAD 233 (377)
Q Consensus 217 f~~dEE~g~Ga~~li~~ 233 (377)
|+.+|. .|.+..+++
T Consensus 63 ~~~~~~--~g~~awl~~ 77 (504)
T PF04114_consen 63 FTDDEL--AGMQAWLEA 77 (504)
T ss_pred ecCCcc--hHHHHHHHH
Confidence 986654 367777764
No 102
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=20.91 E-value=2.8e+02 Score=21.37 Aligned_cols=42 Identities=12% Similarity=-0.057 Sum_probs=30.9
Q ss_pred CcchHHHHHHHHHHhHcCCCCCc-----------chHHHHHHHHHHHHhCCCc
Q 017084 93 RPETVDWLKSVRRTIHQNPELAF-----------QEFETSRLLRAELDRMEIG 134 (377)
Q Consensus 93 ~~~~~~~li~~~~~lv~iPs~s~-----------~E~~~~~~l~~~L~~lG~~ 134 (377)
+++..+++++.+..++.+|+.|. ....+.+.+++|=++.|..
T Consensus 29 ~ee~~d~lv~hF~~iteHP~gSDLIfYP~~~~edsPegIv~~vKeWRa~nG~p 81 (85)
T PF01320_consen 29 TEEEHDELVDHFEKITEHPDGSDLIFYPEDGREDSPEGIVKEVKEWRASNGKP 81 (85)
T ss_dssp SCHHHHHHHHHHHHHH--TTTTHHHHS-STTSTSSHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHcCCCCCCCceeeeCCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 36789999999999999999872 1257899999998888754
Done!