BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017085
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 244 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 303
I+DRV F+ K VA LA D+++ S+ E FG + +EAMA +P +GT GG E+
Sbjct: 265 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRVGGIPEV 322
Query: 304 VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 353
+ +G TG L VG T +A ++L E MG+R E V E F+
Sbjct: 323 IQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFR 370
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 244 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 303
I+DRV F+ K VA LA D+++ S+ E FG + +EAMA +P +GT GG E+
Sbjct: 285 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCIGTRVGGIPEV 342
Query: 304 VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 353
+ +G TG L VG T +A ++L E MG+R E V E F+
Sbjct: 343 IQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFR 390
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/374 (21%), Positives = 140/374 (37%), Gaps = 61/374 (16%)
Query: 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIV 62
L LLR +G + W I+ P+E V + + + +G E++ + +
Sbjct: 62 LVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL----------QGNESLKLTEEMKELY 111
Query: 63 LNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID-SHVT 120
LN K++D + V +H+ + Y K P + ID S
Sbjct: 112 LNVNRENSKFIDLSSFDYV---------LVHDPQPAALIEFYEKKSPWLWRCHIDLSSPN 162
Query: 121 AEYWKNRTRERLRIKMPDTYVVHLG---------NSKELMEVAEDNVAKR--------VL 163
E+W+ R ++ D Y+ HL N +M + D ++++ +L
Sbjct: 163 REFWEFLRR---FVEKYDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEIL 219
Query: 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIG- 222
R + E V E + ++ KG ++ +P V +++G
Sbjct: 220 R--ILERFDVDPEKPIITQVSRFDPWKG-------IFDVIEIYRKVKEKIPGVQLLLVGV 270
Query: 223 ---SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGECF 278
D FE LR ++ + + V + A DV++Q S E F
Sbjct: 271 MAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIR--EGF 328
Query: 279 GRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 338
G EAM PV+G A GG +V+G TG L E + + ++ L H E
Sbjct: 329 GLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVVLYLLKHPEVSK 384
Query: 339 TMGKRGYERVKEIF 352
MG + ERV++ F
Sbjct: 385 EMGAKAKERVRKNF 398
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/374 (21%), Positives = 140/374 (37%), Gaps = 61/374 (16%)
Query: 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIV 62
L LLR +G + W I+ P+E V + + + +G E++ + +
Sbjct: 62 LVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL----------QGNESLKLTEEMKELY 111
Query: 63 LNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID-SHVT 120
LN K++D + V +H+ + Y K P + ID S
Sbjct: 112 LNVNRENSKFIDLSSFDYV---------LVHDPQPAALIEFYEKKSPWLWRCHIDLSSPN 162
Query: 121 AEYWKNRTRERLRIKMPDTYVVHLG---------NSKELMEVAEDNVAKR--------VL 163
E+W+ R ++ D Y+ HL N +M + D ++++ +L
Sbjct: 163 REFWEFLRR---FVEKYDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEIL 219
Query: 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIG- 222
R + E V E + ++ KG ++ +P V +++G
Sbjct: 220 R--ILERFDVDPEKPIITQVSRFDPWKG-------IFDVIEIYRKVKEKIPGVQLLLVGV 270
Query: 223 ---SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGECF 278
D FE LR ++ + + V + A DV++Q S G F
Sbjct: 271 MAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIRAG--F 328
Query: 279 GRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 338
G EAM PV+G A GG +V+G TG L E + + ++ L H E
Sbjct: 329 GLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVVLYLLKHPEVSK 384
Query: 339 TMGKRGYERVKEIF 352
MG + ERV++ F
Sbjct: 385 EMGAKAKERVRKNF 398
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 276 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL-LHPV-GKEGITPLAKNIVKLATH 333
E FG +EAM LP T GG EI+V+G +G + P G + LA K
Sbjct: 675 EAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKED 734
Query: 334 VERRLTMGKRGYERVKEIFQEHHMAERI 361
+ K G +R++E + ++R+
Sbjct: 735 PSHWDEISKGGLQRIEEKYTWQIYSQRL 762
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 276 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL-LHPV-GKEGITPLAKNIVKLATH 333
E FG +EA LP T GG EI+V+G +G + P G + LA K
Sbjct: 675 EAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKED 734
Query: 334 VERRLTMGKRGYERVKEIFQEHHMAERI 361
+ K G +R++E + ++R+
Sbjct: 735 PSHWDEISKGGLQRIEEKYTWQIYSQRL 762
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 138/371 (37%), Gaps = 55/371 (14%)
Query: 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIV 62
L LLR +G + W I+ P+E V + + + +G E++ + +
Sbjct: 62 LVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNAL----------QGNESLKLTEEXKELY 111
Query: 63 LNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID-SHVT 120
LN K++D + V +H+ + Y K P + ID S
Sbjct: 112 LNVNRENSKFIDLSSFDYV---------LVHDPQPAALIEFYEKKSPWLWRCHIDLSSPN 162
Query: 121 AEYWKNRTR-----ERLRIKMPDTYVVHLGNSKELM------EVAEDNVAKR---VLREH 166
E+W+ R +R +P+ L +K ++ ++E NV + +LR
Sbjct: 163 REFWEFLRRFVEKYDRYIFHLPEYVQPELDRNKAVIXPPSIDPLSEKNVELKQTEILR-- 220
Query: 167 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIG---- 222
+ E V E + ++ KG ++ +P V +++G
Sbjct: 221 ILERFDVDPEKPIITQVSRFDPWKG-------IFDVIEIYRKVKEKIPGVQLLLVGVXAH 273
Query: 223 SDMNAQTKFESELRNYVMQKKIQDRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGECFGRI 281
D FE LR ++ + + V + A DV++Q S E FG
Sbjct: 274 DDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQXSIR--EGFGLT 331
Query: 282 TIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 341
EA PV+G A GG +V+G TG L E + + ++ L H E G
Sbjct: 332 VTEAXWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAV----EVVLYLLKHPEVSKEXG 387
Query: 342 KRGYERVKEIF 352
+ ERV++ F
Sbjct: 388 AKAKERVRKNF 398
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 219 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWG 275
VII + R+ + ++ R+ F++ + VA Y AA V V ++
Sbjct: 279 VIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVP---SFN 335
Query: 276 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITP--LAKNIVKLATH 333
E FG + +EA A PV+ GG V G TGLL +G +P A + L
Sbjct: 336 ESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLL----VDGHSPHAWADALATLLDD 391
Query: 334 VERRLTMGKRGYERVK 349
E R+ MG+ E +
Sbjct: 392 DETRIRMGEDAVEHAR 407
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 219 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVAPYLAAIDVLVQNSQAWG 275
VII + R+ + ++ R+ F++ + VA Y AA V V ++
Sbjct: 259 VIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVP---SFN 315
Query: 276 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITP--LAKNIVKLATH 333
E FG + +EA A PV+ GG V G TGLL +G +P A + L
Sbjct: 316 ESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLL----VDGHSPHAWADALATLLDD 371
Query: 334 VERRLTMGKRGYERVK 349
E R+ MG+ E +
Sbjct: 372 DETRIRMGEDAVEHAR 387
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 276 ECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 335
E FG +EAMA LP + T GG EI+ G G+L V E +A+ ++K E
Sbjct: 369 EPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVL--VDPEDPEDIARGLLKAFESEE 426
Query: 336 RRLTMGKRGYERVKEIF 352
++G +RV+E +
Sbjct: 427 TWSAYQEKGKQRVEERY 443
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 244 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 303
++ VHF + V+ +AA D+L+ A+ E G + +EA+ LPVL TA G
Sbjct: 251 VRSNVHFFSGRNDVSELMAAADLLLH--PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHY 308
Query: 304 VVNGTTG--LLHPVGKEGIT 321
+ + G + P +E +
Sbjct: 309 IADANCGTVIAEPFSQEQLN 328
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGS 223
+ R+ LG + + A + + KGQD + + + P +I+GS
Sbjct: 185 KSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAAR-------PDAQLLIVGS 237
Query: 224 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG-----E 276
++ES LR + + V F+ + + LAA D+ ++ G E
Sbjct: 238 G-----RYESTLRR--LATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290
Query: 277 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT 308
G + +EA A +PV+ +GG E V T
Sbjct: 291 GLGIVYLEAQACGVPVIAGTSGGAPETVTPAT 322
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGS 223
+ R+ LG + + A + + KGQD + + + P +I+GS
Sbjct: 185 KSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAAR-------PDAQLLIVGS 237
Query: 224 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG-----E 276
++ES LR + + V F+ + + LAA D+ ++ G E
Sbjct: 238 G-----RYESTLRR--LATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290
Query: 277 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT 308
G + +EA A +PV+ +GG E V T
Sbjct: 291 GLGIVYLEAQACGVPVIAGTSGGAPETVTPAT 322
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 179 LFAIINSVSRGKGQDLFLHSFYESXXXXXXXXXXVPSVHAVIIGSDMNAQTKFESELRNY 238
L A I + KG D+ + E V V++G+ + KFE L++
Sbjct: 329 LIAFIGRLEEQKGPDVMAAAIPELMQE---------DVQIVLLGT---GKKKFEKLLKS- 375
Query: 239 VMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296
M++K +V V K +L A DVL S+ E G I ++ M + P +
Sbjct: 376 -MEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRF--EPCGLIQLQGMRYGTPCACAS 432
Query: 297 AGGTTEIVVNGTTGL 311
GG + V+ G TG
Sbjct: 433 TGGLVDTVIEGKTGF 447
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 273 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 312
A E FG IEA A PV+ GG E V+N TG L
Sbjct: 105 AKDEDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYL 144
>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
Length = 294
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 129 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED 177
+E +K T +H G KE++E+AE VAK L+ E GV N +
Sbjct: 171 QEPACVKTCPTGAIHFGTKKEMLELAEQRVAK--LKARGYEHAGVYNPE 217
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 273 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 329
++ E FG + +EAM + +A GG +I+ N TG+L G G LA I+K
Sbjct: 338 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 391
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 273 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 329
++ E FG + +EAM + +A GG +I+ N TG+L G G LA I+K
Sbjct: 339 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 392
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 262 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGIT 321
++D ++ S + E FG + +EAM + +A GG +I+ N TG+L G G
Sbjct: 329 GSVDFVIIPS--YFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG-- 383
Query: 322 PLAKNIVK 329
LA I+K
Sbjct: 384 ELANAILK 391
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 273 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 329
++ E FG + +EAM + +A GG +I+ N TG+L G G LA I+K
Sbjct: 123 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGDPG--ELANAILK 176
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 213 VPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271
V + V IG +D++A + + +Q+ I+ + + A +LA + Q
Sbjct: 167 VEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQC 226
Query: 272 QAWGECFGRITIEAMAF 288
AWG F + ++ M +
Sbjct: 227 LAWGANFVAVGVDTMLY 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,282,811
Number of Sequences: 62578
Number of extensions: 400106
Number of successful extensions: 1016
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 28
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)