Query 017085
Match_columns 377
No_of_seqs 240 out of 2324
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 05:28:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03088 stp2 sugar transfera 100.0 5.5E-44 1.2E-48 325.3 31.4 335 2-369 22-374 (374)
2 TIGR03449 mycothiol_MshA UDP-N 100.0 3.8E-43 8.2E-48 323.1 32.0 336 1-370 27-404 (405)
3 PRK15427 colanic acid biosynth 100.0 2.5E-43 5.4E-48 321.4 29.6 278 54-367 115-405 (406)
4 cd03796 GT1_PIG-A_like This fa 100.0 2.3E-42 5E-47 316.4 31.0 325 2-372 22-372 (398)
5 cd04962 GT1_like_5 This family 100.0 6.1E-42 1.3E-46 311.8 32.7 337 2-368 20-371 (371)
6 TIGR02472 sucr_P_syn_N sucrose 100.0 3.1E-42 6.7E-47 318.4 30.3 344 2-365 34-438 (439)
7 PRK10307 putative glycosyl tra 100.0 7.2E-42 1.6E-46 314.9 30.0 338 2-371 23-411 (412)
8 PLN02871 UDP-sulfoquinovose:DA 100.0 6.7E-42 1.5E-46 318.7 28.2 332 2-372 82-439 (465)
9 PLN02316 synthase/transferase 100.0 6.3E-41 1.4E-45 323.3 33.8 293 56-369 708-1035(1036)
10 cd03819 GT1_WavL_like This fam 100.0 6.1E-41 1.3E-45 303.4 30.0 323 1-357 17-355 (355)
11 PRK00654 glgA glycogen synthas 100.0 8.8E-41 1.9E-45 310.6 31.2 294 56-370 117-465 (466)
12 PRK15179 Vi polysaccharide bio 100.0 2.4E-40 5.2E-45 313.0 31.3 288 50-366 393-692 (694)
13 PRK15490 Vi polysaccharide bio 100.0 3.9E-40 8.5E-45 297.8 31.1 289 48-367 271-575 (578)
14 PRK15484 lipopolysaccharide 1, 100.0 1.4E-39 3.1E-44 295.1 32.4 275 56-369 98-379 (380)
15 cd03792 GT1_Trehalose_phosphor 100.0 5.4E-40 1.2E-44 298.5 29.7 334 1-367 19-371 (372)
16 PLN02939 transferase, transfer 100.0 1.8E-39 3.9E-44 307.8 34.2 301 56-374 609-973 (977)
17 TIGR02149 glgA_Coryne glycogen 100.0 1.2E-39 2.7E-44 298.3 30.7 283 56-369 82-388 (388)
18 cd03818 GT1_ExpC_like This fam 100.0 7.4E-40 1.6E-44 299.8 28.0 232 106-362 153-395 (396)
19 TIGR02468 sucrsPsyn_pln sucros 100.0 1.8E-39 3.9E-44 312.3 30.2 300 57-372 310-675 (1050)
20 cd04951 GT1_WbdM_like This fam 100.0 4.3E-39 9.4E-44 291.8 31.0 329 2-366 20-359 (360)
21 TIGR02095 glgA glycogen/starch 100.0 2E-39 4.3E-44 303.0 29.4 291 56-368 127-473 (473)
22 PRK14099 glycogen synthase; Pr 100.0 3.8E-39 8.2E-44 298.5 29.7 295 56-373 132-484 (485)
23 cd05844 GT1_like_7 Glycosyltra 100.0 2.7E-39 5.9E-44 293.9 26.7 275 50-364 75-367 (367)
24 cd03807 GT1_WbnK_like This fam 100.0 2.2E-38 4.8E-43 286.9 30.6 326 2-366 20-365 (365)
25 cd03800 GT1_Sucrose_synthase T 100.0 2.8E-38 6.1E-43 290.4 31.7 329 2-362 29-397 (398)
26 cd03813 GT1_like_3 This family 100.0 2.2E-39 4.8E-44 301.9 24.5 276 56-366 172-475 (475)
27 TIGR02470 sucr_synth sucrose s 100.0 6E-38 1.3E-42 296.3 32.3 295 56-365 384-745 (784)
28 cd03791 GT1_Glycogen_synthase_ 100.0 2.1E-38 4.7E-43 297.2 29.3 290 56-366 128-475 (476)
29 cd03805 GT1_ALG2_like This fam 100.0 1.9E-38 4.2E-43 290.9 26.3 282 53-361 90-392 (392)
30 cd03799 GT1_amsK_like This is 100.0 1.2E-37 2.6E-42 281.8 28.0 316 2-360 19-354 (355)
31 PRK09922 UDP-D-galactose:(gluc 100.0 9.2E-38 2E-42 282.1 25.7 321 2-370 22-358 (359)
32 PRK14098 glycogen synthase; Pr 100.0 1.2E-37 2.6E-42 288.9 26.5 294 56-370 140-488 (489)
33 cd03812 GT1_CapH_like This fam 100.0 7E-37 1.5E-41 277.2 29.2 309 2-349 20-347 (358)
34 PLN00142 sucrose synthase 100.0 8.3E-37 1.8E-41 288.6 29.8 295 56-365 407-768 (815)
35 cd03816 GT1_ALG1_like This fam 100.0 1.2E-36 2.7E-41 278.9 29.0 326 1-358 21-407 (415)
36 cd03825 GT1_wcfI_like This fam 100.0 9.5E-37 2.1E-41 277.0 26.2 306 2-368 21-365 (365)
37 cd03822 GT1_ecORF704_like This 100.0 2.3E-36 4.9E-41 274.4 28.6 334 2-366 21-366 (366)
38 cd03821 GT1_Bme6_like This fam 100.0 2.1E-36 4.5E-41 275.0 27.2 329 2-362 22-374 (375)
39 cd03795 GT1_like_4 This family 100.0 3E-36 6.5E-41 272.9 27.7 313 2-358 22-357 (357)
40 cd03801 GT1_YqgM_like This fam 100.0 8.4E-36 1.8E-40 270.2 29.4 332 2-366 22-374 (374)
41 cd03808 GT1_cap1E_like This fa 100.0 1E-35 2.3E-40 268.6 29.6 314 2-362 18-358 (359)
42 cd03820 GT1_amsD_like This fam 100.0 9.9E-36 2.1E-40 267.6 28.3 310 2-362 21-347 (348)
43 cd03814 GT1_like_2 This family 100.0 5.6E-36 1.2E-40 271.5 26.2 323 2-366 22-364 (364)
44 cd04955 GT1_like_6 This family 100.0 1.1E-35 2.4E-40 269.8 28.2 311 2-366 23-363 (363)
45 cd03802 GT1_AviGT4_like This f 100.0 2.8E-36 6.1E-41 270.7 23.3 301 2-366 27-335 (335)
46 TIGR03087 stp1 sugar transfera 100.0 1.4E-35 2.9E-40 271.6 27.3 276 51-366 98-395 (397)
47 TIGR02918 accessory Sec system 100.0 1.9E-35 4.2E-40 273.6 28.2 273 55-368 209-500 (500)
48 cd03817 GT1_UGDG_like This fam 100.0 3.8E-35 8.3E-40 266.7 29.3 328 2-367 22-373 (374)
49 PRK10125 putative glycosyl tra 100.0 8.1E-36 1.8E-40 271.0 24.6 315 1-368 20-405 (405)
50 cd03811 GT1_WabH_like This fam 100.0 2.3E-35 5.1E-40 265.6 26.9 317 2-353 20-352 (353)
51 PLN02949 transferase, transfer 100.0 1.7E-34 3.8E-39 264.8 31.7 234 108-371 219-460 (463)
52 cd03806 GT1_ALG11_like This fa 100.0 2.2E-34 4.8E-39 263.7 29.7 226 106-359 186-418 (419)
53 KOG1111 N-acetylglucosaminyltr 100.0 1.4E-35 2.9E-40 247.2 19.2 324 1-372 22-371 (426)
54 cd03809 GT1_mtfB_like This fam 100.0 1.4E-35 3.1E-40 269.0 21.2 321 2-362 23-364 (365)
55 PLN02846 digalactosyldiacylgly 100.0 1.1E-34 2.3E-39 262.0 26.5 268 49-367 108-391 (462)
56 cd03798 GT1_wlbH_like This fam 100.0 1E-34 2.2E-39 263.7 26.6 331 2-367 22-376 (377)
57 cd03794 GT1_wbuB_like This fam 100.0 2.4E-34 5.2E-39 262.9 28.3 326 2-361 22-393 (394)
58 cd03823 GT1_ExpE7_like This fa 100.0 5.1E-34 1.1E-38 258.0 29.7 315 2-366 23-358 (359)
59 cd04946 GT1_AmsK_like This fam 100.0 1.5E-34 3.3E-39 264.5 26.0 269 56-362 126-406 (407)
60 PHA01630 putative group 1 glyc 100.0 2.7E-34 5.8E-39 253.3 24.7 263 57-367 46-330 (331)
61 cd04949 GT1_gtfA_like This fam 100.0 1.7E-33 3.6E-38 256.3 25.1 263 56-361 98-372 (372)
62 PLN02501 digalactosyldiacylgly 100.0 1E-32 2.2E-37 252.5 25.9 267 48-365 425-707 (794)
63 PHA01633 putative glycosyl tra 100.0 3.5E-31 7.5E-36 230.5 25.8 241 85-363 71-335 (335)
64 PLN02275 transferase, transfer 100.0 1.3E-31 2.7E-36 242.6 22.4 245 54-331 97-371 (371)
65 cd03804 GT1_wbaZ_like This fam 100.0 4.6E-30 1E-34 231.8 21.4 199 106-361 150-350 (351)
66 PRK05749 3-deoxy-D-manno-octul 100.0 6.3E-29 1.4E-33 229.6 24.9 329 2-372 68-424 (425)
67 TIGR02400 trehalose_OtsA alpha 100.0 3.4E-28 7.3E-33 222.6 29.0 289 56-365 126-454 (456)
68 cd03788 GT1_TPS Trehalose-6-Ph 100.0 1.1E-28 2.3E-33 228.0 25.2 292 56-364 130-458 (460)
69 KOG0853 Glycosyltransferase [C 100.0 8.9E-29 1.9E-33 219.9 23.7 305 56-370 144-470 (495)
70 cd03793 GT1_Glycogen_synthase_ 100.0 4.2E-28 9.1E-33 220.0 27.0 303 56-370 147-589 (590)
71 PRK00726 murG undecaprenyldiph 100.0 4E-28 8.7E-33 219.4 25.7 304 2-366 20-356 (357)
72 cd03785 GT1_MurG MurG is an N- 100.0 9.4E-28 2E-32 216.7 26.3 297 2-358 18-348 (350)
73 PLN02605 monogalactosyldiacylg 100.0 1.2E-27 2.7E-32 217.4 24.8 275 49-364 92-378 (382)
74 TIGR01133 murG undecaprenyldip 100.0 1.9E-27 4.2E-32 214.5 24.0 295 2-359 19-346 (348)
75 PF00534 Glycos_transf_1: Glyc 100.0 1.2E-27 2.6E-32 193.4 19.2 169 164-347 2-172 (172)
76 PRK13609 diacylglycerol glucos 100.0 2.2E-26 4.9E-31 209.7 26.2 272 48-368 95-372 (380)
77 PLN03063 alpha,alpha-trehalose 100.0 7.2E-26 1.6E-30 219.6 28.3 293 58-370 148-480 (797)
78 COG0297 GlgA Glycogen synthase 99.9 1.9E-25 4.2E-30 202.1 25.4 295 56-373 129-483 (487)
79 PRK13608 diacylglycerol glucos 99.9 6.4E-25 1.4E-29 199.8 24.4 275 48-371 95-375 (391)
80 PRK14501 putative bifunctional 99.9 3.4E-24 7.4E-29 208.6 25.7 293 57-371 133-466 (726)
81 cd04950 GT1_like_1 Glycosyltra 99.9 7E-25 1.5E-29 198.8 17.9 260 56-367 101-371 (373)
82 TIGR02398 gluc_glyc_Psyn gluco 99.9 5.3E-22 1.1E-26 180.7 29.8 292 57-365 132-480 (487)
83 PRK00025 lpxB lipid-A-disaccha 99.9 5E-22 1.1E-26 181.3 23.7 317 3-370 20-376 (380)
84 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 1.6E-21 3.6E-26 176.9 24.1 253 50-341 81-345 (363)
85 cd01635 Glycosyltransferase_GT 99.9 2E-22 4.4E-27 170.4 16.9 118 182-313 109-229 (229)
86 PRK09814 beta-1,6-galactofuran 99.9 1.2E-21 2.5E-26 174.7 18.8 247 52-360 58-324 (333)
87 TIGR00236 wecB UDP-N-acetylglu 99.9 6.3E-21 1.4E-25 172.8 21.4 275 48-363 77-363 (365)
88 PLN03064 alpha,alpha-trehalose 99.9 1.9E-19 4.1E-24 174.3 25.7 292 58-369 232-563 (934)
89 COG0438 RfaG Glycosyltransfera 99.9 1.8E-19 3.8E-24 162.4 22.8 225 110-370 151-379 (381)
90 KOG1387 Glycosyltransferase [C 99.8 6.5E-19 1.4E-23 147.0 23.0 235 106-372 219-463 (465)
91 TIGR00215 lpxB lipid-A-disacch 99.8 3.9E-18 8.4E-23 154.5 24.3 311 2-353 23-370 (385)
92 TIGR03713 acc_sec_asp1 accesso 99.8 8.2E-18 1.8E-22 156.2 24.3 219 105-365 268-519 (519)
93 TIGR02094 more_P_ylases alpha- 99.8 1.5E-17 3.3E-22 156.2 24.8 186 173-365 385-598 (601)
94 PF13692 Glyco_trans_1_4: Glyc 99.8 3.5E-19 7.6E-24 137.7 9.1 133 177-333 2-135 (135)
95 KOG2941 Beta-1,4-mannosyltrans 99.8 2.6E-16 5.6E-21 131.7 26.0 329 4-361 33-435 (444)
96 cd04299 GT1_Glycogen_Phosphory 99.7 2.5E-15 5.5E-20 143.8 24.6 189 173-365 474-687 (778)
97 PRK12446 undecaprenyldiphospho 99.7 7.4E-15 1.6E-19 131.3 24.6 295 2-366 20-350 (352)
98 COG0707 MurG UDP-N-acetylgluco 99.7 1.7E-14 3.7E-19 127.5 25.8 260 50-367 84-353 (357)
99 PF00982 Glyco_transf_20: Glyc 99.7 8E-14 1.7E-18 127.8 28.3 296 56-366 140-473 (474)
100 PF05693 Glycogen_syn: Glycoge 99.7 2.2E-14 4.7E-19 130.5 21.9 257 108-373 220-587 (633)
101 PRK10117 trehalose-6-phosphate 99.7 1.1E-13 2.4E-18 125.2 25.9 295 57-369 123-455 (474)
102 PF13524 Glyco_trans_1_2: Glyc 99.6 8.8E-15 1.9E-19 104.6 9.6 92 266-363 1-92 (92)
103 PLN02205 alpha,alpha-trehalose 99.6 3.3E-12 7.1E-17 125.1 29.2 296 59-369 203-553 (854)
104 COG0380 OtsA Trehalose-6-phosp 99.6 4.5E-12 9.8E-17 114.3 27.7 296 56-367 146-479 (486)
105 TIGR02919 accessory Sec system 99.6 6.2E-13 1.3E-17 121.0 21.3 185 108-346 238-424 (438)
106 TIGR03590 PseG pseudaminic aci 99.5 3.2E-11 6.9E-16 104.5 22.3 235 2-298 22-269 (279)
107 COG1519 KdtA 3-deoxy-D-manno-o 99.5 6.7E-11 1.4E-15 103.5 24.1 278 48-366 114-416 (419)
108 TIGR03492 conserved hypothetic 99.5 3.1E-11 6.7E-16 109.7 22.9 260 52-361 86-392 (396)
109 PF02684 LpxB: Lipid-A-disacch 99.4 4.6E-10 9.9E-15 99.7 25.4 288 2-343 16-350 (373)
110 PF13844 Glyco_transf_41: Glyc 99.4 6.3E-11 1.4E-15 107.0 19.5 182 167-368 275-467 (468)
111 COG0763 LpxB Lipid A disacchar 99.4 5.8E-10 1.3E-14 96.7 23.8 256 51-345 79-356 (381)
112 PF13439 Glyco_transf_4: Glyco 99.3 4.6E-13 9.9E-18 108.3 3.4 140 1-151 19-176 (177)
113 TIGR03568 NeuC_NnaA UDP-N-acet 99.3 1.8E-09 3.9E-14 97.3 24.1 270 48-364 84-364 (365)
114 PF04007 DUF354: Protein of un 99.3 1.1E-09 2.4E-14 96.0 20.9 264 2-331 18-308 (335)
115 COG3914 Spy Predicted O-linked 99.3 1E-09 2.3E-14 98.9 20.8 188 168-373 421-619 (620)
116 TIGR01426 MGT glycosyltransfer 99.2 3.6E-09 7.7E-14 97.0 21.0 114 244-365 273-390 (392)
117 cd03784 GT1_Gtf_like This fami 99.2 2.3E-09 5E-14 98.7 19.8 92 243-342 285-380 (401)
118 PRK01021 lpxB lipid-A-disaccha 99.1 7.5E-08 1.6E-12 89.5 25.9 253 51-346 304-584 (608)
119 PF02350 Epimerase_2: UDP-N-ac 99.1 4.7E-08 1E-12 87.2 23.6 315 5-365 1-345 (346)
120 COG0381 WecB UDP-N-acetylgluco 99.1 1.4E-07 3E-12 82.4 24.6 276 48-367 83-370 (383)
121 PF13579 Glyco_trans_4_4: Glyc 99.1 2.8E-10 6.1E-15 90.2 6.4 127 2-145 9-160 (160)
122 PF13528 Glyco_trans_1_3: Glyc 99.0 2E-08 4.4E-13 89.4 16.9 120 175-330 191-317 (318)
123 PRK02797 4-alpha-L-fucosyltran 99.0 2.5E-07 5.4E-12 78.3 19.9 270 55-371 37-320 (322)
124 TIGR00661 MJ1255 conserved hyp 98.9 1.5E-07 3.2E-12 83.8 18.8 81 245-334 228-315 (321)
125 PF04464 Glyphos_transf: CDP-G 98.8 6.3E-07 1.4E-11 81.5 19.4 282 38-364 59-366 (369)
126 COG1817 Uncharacterized protei 98.8 1.1E-06 2.4E-11 73.9 17.8 267 2-335 18-316 (346)
127 PF07429 Glyco_transf_56: 4-al 98.8 5.1E-06 1.1E-10 71.5 21.6 268 54-368 75-356 (360)
128 COG4641 Uncharacterized protei 98.7 7.7E-07 1.7E-11 77.1 14.7 315 3-370 23-364 (373)
129 KOG3742 Glycogen synthase [Car 98.5 1.3E-05 2.9E-10 70.5 16.3 107 255-364 492-609 (692)
130 PRK14089 ipid-A-disaccharide s 98.5 1.5E-05 3.2E-10 70.8 17.0 185 56-295 75-260 (347)
131 PF13477 Glyco_trans_4_2: Glyc 98.5 6.7E-07 1.5E-11 69.1 7.5 83 1-94 14-109 (139)
132 COG3980 spsG Spore coat polysa 98.3 7.1E-05 1.5E-09 62.4 16.7 135 179-342 161-302 (318)
133 KOG4626 O-linked N-acetylgluco 98.3 8.4E-05 1.8E-09 68.4 18.4 236 107-371 697-944 (966)
134 COG0058 GlgP Glucan phosphoryl 98.3 1E-05 2.2E-10 77.1 13.3 142 173-317 483-632 (750)
135 PF09314 DUF1972: Domain of un 98.2 7.6E-06 1.7E-10 65.2 8.6 131 2-147 25-185 (185)
136 PF04101 Glyco_tran_28_C: Glyc 98.2 1.2E-06 2.6E-11 70.1 3.6 93 246-344 55-155 (167)
137 PHA03392 egt ecdysteroid UDP-g 98.2 6.5E-05 1.4E-09 70.7 15.2 139 175-345 295-444 (507)
138 COG1819 Glycosyl transferases, 98.1 0.00011 2.4E-09 67.2 15.6 159 176-365 237-399 (406)
139 PRK14986 glycogen phosphorylas 98.0 4.6E-05 9.9E-10 73.7 11.0 150 172-325 538-702 (815)
140 PF00343 Phosphorylase: Carboh 98.0 0.00055 1.2E-08 65.5 17.3 150 172-325 439-603 (713)
141 TIGR02093 P_ylase glycogen/sta 98.0 4.2E-05 9.2E-10 73.7 9.8 150 172-325 522-686 (794)
142 cd04300 GT1_Glycogen_Phosphory 97.9 9.1E-05 2E-09 71.7 11.4 144 172-316 525-683 (797)
143 PRK14985 maltodextrin phosphor 97.8 8.6E-05 1.9E-09 71.6 9.0 144 172-316 524-682 (798)
144 COG4671 Predicted glycosyl tra 97.8 0.004 8.6E-08 54.0 17.6 142 175-334 218-366 (400)
145 KOG1050 Trehalose-6-phosphate 97.7 0.0089 1.9E-07 58.2 21.1 193 138-342 240-449 (732)
146 PRK10017 colanic acid biosynth 97.6 0.035 7.7E-07 51.1 22.7 237 84-342 148-401 (426)
147 PLN02670 transferase, transfer 97.6 0.0039 8.5E-08 58.1 15.5 116 248-369 341-467 (472)
148 PF00201 UDPGT: UDP-glucoronos 97.5 0.00085 1.8E-08 63.8 11.2 147 165-339 264-415 (500)
149 PF11440 AGT: DNA alpha-glucos 97.3 0.031 6.7E-07 46.9 16.1 299 5-333 12-353 (355)
150 PLN02448 UDP-glycosyltransfera 97.3 0.01 2.2E-07 55.6 15.3 146 175-346 273-429 (459)
151 PF06258 Mito_fiss_Elm1: Mitoc 97.3 0.098 2.1E-06 46.1 19.8 198 55-299 55-259 (311)
152 PLN00414 glycosyltransferase f 97.2 0.018 3.9E-07 53.5 15.2 154 174-346 250-416 (446)
153 PLN03004 UDP-glycosyltransfera 97.2 0.01 2.2E-07 55.1 13.5 85 246-335 334-426 (451)
154 cd03789 GT1_LPS_heptosyltransf 97.1 0.021 4.5E-07 49.8 14.5 97 179-296 124-224 (279)
155 PLN03007 UDP-glucosyltransfera 97.1 0.026 5.6E-07 53.3 15.9 85 245-334 344-441 (482)
156 PLN02764 glycosyltransferase f 97.1 0.018 3.9E-07 53.3 14.1 94 248-346 319-421 (453)
157 PLN02410 UDP-glucoronosyl/UDP- 97.0 0.019 4E-07 53.5 13.5 93 246-345 324-421 (451)
158 PLN02208 glycosyltransferase f 97.0 0.026 5.7E-07 52.4 14.3 96 246-346 311-415 (442)
159 PLN02562 UDP-glycosyltransfera 96.9 0.039 8.5E-07 51.4 15.0 88 245-339 327-419 (448)
160 TIGR03609 S_layer_CsaB polysac 96.9 0.12 2.6E-06 45.5 17.4 72 215-296 205-276 (298)
161 PF12000 Glyco_trans_4_3: Gkyc 96.9 0.0045 9.8E-08 48.8 7.1 38 107-151 133-170 (171)
162 PLN02210 UDP-glucosyl transfer 96.9 0.034 7.5E-07 51.9 13.9 84 247-335 325-417 (456)
163 PLN02863 UDP-glucoronosyl/UDP- 96.9 0.1 2.2E-06 49.1 17.0 80 246-332 343-432 (477)
164 PLN02167 UDP-glycosyltransfera 96.8 0.072 1.6E-06 50.1 15.7 83 247-334 341-435 (475)
165 PLN02173 UDP-glucosyl transfer 96.7 0.05 1.1E-06 50.5 13.8 95 246-346 317-420 (449)
166 PLN02555 limonoid glucosyltran 96.7 0.091 2E-06 49.3 15.5 94 245-346 336-441 (480)
167 COG0859 RfaF ADP-heptose:LPS h 96.7 0.14 2.9E-06 46.0 15.9 100 176-296 175-277 (334)
168 PLN02554 UDP-glycosyltransfera 96.7 0.077 1.7E-06 50.0 14.8 85 246-335 342-443 (481)
169 PLN02992 coniferyl-alcohol glu 96.6 0.13 2.8E-06 48.2 15.6 83 247-334 339-428 (481)
170 PF06925 MGDG_synth: Monogalac 96.4 0.011 2.4E-07 47.1 6.5 88 48-145 80-168 (169)
171 PLN00164 glucosyltransferase; 96.3 0.2 4.2E-06 47.3 15.2 95 247-346 340-445 (480)
172 PF05159 Capsule_synth: Capsul 96.3 0.065 1.4E-06 46.4 11.0 106 175-298 115-227 (269)
173 PLN02152 indole-3-acetate beta 96.2 0.19 4E-06 46.9 13.9 86 245-335 326-419 (455)
174 COG3660 Predicted nucleoside-d 96.1 0.69 1.5E-05 38.9 19.7 119 165-299 151-275 (329)
175 TIGR02195 heptsyl_trn_II lipop 96.1 0.11 2.4E-06 46.5 12.0 109 165-295 162-276 (334)
176 PLN02207 UDP-glycosyltransfera 95.7 0.52 1.1E-05 44.2 14.8 82 246-332 332-425 (468)
177 PF15024 Glyco_transf_18: Glyc 95.6 0.37 7.9E-06 45.2 13.2 145 184-367 284-455 (559)
178 PRK10422 lipopolysaccharide co 95.6 0.16 3.5E-06 45.8 10.9 101 176-295 183-287 (352)
179 PF08323 Glyco_transf_5: Starc 95.6 0.025 5.4E-07 48.1 5.3 21 2-22 24-44 (245)
180 PF01075 Glyco_transf_9: Glyco 95.5 0.21 4.6E-06 42.5 10.9 103 175-295 104-208 (247)
181 PF04230 PS_pyruv_trans: Polys 95.4 0.8 1.7E-05 39.4 14.6 36 255-297 249-284 (286)
182 PRK10916 ADP-heptose:LPS hepto 95.4 0.4 8.7E-06 43.2 12.7 108 167-295 170-286 (348)
183 PLN02534 UDP-glycosyltransfera 95.3 1.6 3.5E-05 41.3 16.7 95 246-345 344-457 (491)
184 PRK10964 ADP-heptose:LPS hepto 95.2 1.2 2.6E-05 39.7 15.2 98 175-295 177-278 (322)
185 TIGR02193 heptsyl_trn_I lipopo 95.2 0.88 1.9E-05 40.4 14.4 98 175-295 178-279 (319)
186 TIGR02201 heptsyl_trn_III lipo 94.9 0.56 1.2E-05 42.2 12.4 102 175-295 180-285 (344)
187 COG1887 TagB Putative glycosyl 94.9 3.1 6.6E-05 38.1 17.7 194 108-335 147-355 (388)
188 KOG1192 UDP-glucuronosyl and U 94.8 0.83 1.8E-05 43.4 13.7 93 245-342 334-431 (496)
189 PF10087 DUF2325: Uncharacteri 94.7 0.14 3.1E-06 36.4 6.2 80 218-303 2-89 (97)
190 PLN03015 UDP-glucosyl transfer 94.5 1.6 3.6E-05 40.9 14.3 80 248-332 337-425 (470)
191 KOG3349 Predicted glycosyltran 93.9 1.6 3.5E-05 33.3 10.4 99 178-295 5-106 (170)
192 PF03016 Exostosin: Exostosin 91.4 0.2 4.4E-06 44.1 3.5 69 255-327 228-299 (302)
193 PF04413 Glycos_transf_N: 3-De 90.5 2.4 5.2E-05 34.3 8.6 127 2-144 39-179 (186)
194 KOG1021 Acetylglucosaminyltran 90.2 4.3 9.4E-05 38.2 11.2 95 255-356 335-434 (464)
195 PF03033 Glyco_transf_28: Glyc 89.9 0.39 8.4E-06 36.6 3.5 36 2-47 17-52 (139)
196 cd03146 GAT1_Peptidase_E Type 88.4 6.2 0.00014 32.7 9.8 85 214-298 30-123 (212)
197 TIGR03646 YtoQ_fam YtoQ family 87.3 5.3 0.00011 29.7 7.4 39 258-299 70-113 (144)
198 COG2327 WcaK Polysaccharide py 86.5 25 0.00054 31.9 13.3 94 237-337 257-355 (385)
199 PF01113 DapB_N: Dihydrodipico 86.3 2.3 5E-05 31.8 5.6 45 255-301 59-103 (124)
200 PRK10840 transcriptional regul 86.1 14 0.0003 30.5 10.8 112 215-333 3-126 (216)
201 PRK05282 (alpha)-aspartyl dipe 86.0 15 0.00031 31.0 10.6 81 217-299 33-123 (233)
202 COG0373 HemA Glutamyl-tRNA red 86.0 28 0.00061 32.0 14.6 97 216-329 203-303 (414)
203 PF08660 Alg14: Oligosaccharid 85.1 8.3 0.00018 30.7 8.4 72 53-124 88-161 (170)
204 PF11071 DUF2872: Protein of u 83.7 8.5 0.00018 28.6 7.1 42 257-301 66-112 (141)
205 PRK13940 glutamyl-tRNA reducta 82.8 28 0.00062 32.2 12.0 45 255-303 234-278 (414)
206 smart00672 CAP10 Putative lipo 82.3 18 0.00038 31.0 9.8 90 278-368 157-249 (256)
207 cd03129 GAT1_Peptidase_E_like 82.2 15 0.00032 30.4 9.2 85 214-298 28-123 (210)
208 PF08288 PIGA: PIGA (GPI ancho 80.7 2.4 5.2E-05 29.1 3.2 46 48-95 41-86 (90)
209 PRK10360 DNA-binding transcrip 80.0 25 0.00054 28.1 9.9 66 264-332 48-117 (196)
210 PF10933 DUF2827: Protein of u 79.6 46 0.001 29.8 21.7 303 3-355 27-351 (364)
211 TIGR01768 GGGP-family geranylg 79.6 5 0.00011 33.4 5.4 55 214-272 26-80 (223)
212 PF03853 YjeF_N: YjeF-related 79.5 5.3 0.00012 31.7 5.5 60 3-62 44-104 (169)
213 KOG0780 Signal recognition par 79.0 51 0.0011 30.0 12.0 167 180-366 157-341 (483)
214 PRK05562 precorrin-2 dehydroge 79.0 37 0.0008 28.4 14.8 125 214-350 47-179 (223)
215 PF10093 DUF2331: Uncharacteri 78.6 37 0.00079 30.8 10.8 107 164-295 168-288 (374)
216 PRK13398 3-deoxy-7-phosphohept 78.6 43 0.00093 28.9 11.6 105 179-297 28-142 (266)
217 PF02310 B12-binding: B12 bind 76.1 7.2 0.00016 28.7 5.1 40 3-65 20-59 (121)
218 PRK05583 ribosomal protein L7A 75.3 22 0.00048 25.6 7.1 67 214-286 32-98 (104)
219 PF05686 Glyco_transf_90: Glyc 74.8 27 0.00059 32.1 9.3 88 280-368 228-318 (395)
220 cd05565 PTS_IIB_lactose PTS_II 73.0 9.1 0.0002 27.2 4.6 74 218-296 4-79 (99)
221 PRK04175 rpl7ae 50S ribosomal 72.8 25 0.00055 26.1 7.1 78 190-284 33-111 (122)
222 PF00070 Pyr_redox: Pyridine n 72.6 9.1 0.0002 25.8 4.5 47 2-48 13-62 (80)
223 PF09949 DUF2183: Uncharacteri 72.4 30 0.00065 24.7 7.1 28 212-242 61-88 (100)
224 cd01080 NAD_bind_m-THF_DH_Cycl 71.6 25 0.00054 27.9 7.3 53 213-272 42-96 (168)
225 TIGR01769 GGGP geranylgeranylg 71.5 19 0.00042 29.6 6.8 73 186-272 5-78 (205)
226 COG2984 ABC-type uncharacteriz 70.7 21 0.00046 31.3 7.1 83 214-298 157-248 (322)
227 PF12038 DUF3524: Domain of un 70.5 28 0.0006 27.4 7.0 78 51-131 53-141 (168)
228 PF01975 SurE: Survival protei 70.3 4.8 0.0001 32.8 3.1 21 2-22 18-38 (196)
229 COG4567 Response regulator con 70.0 42 0.00092 26.0 7.6 107 214-330 8-124 (182)
230 PRK07714 hypothetical protein; 69.5 35 0.00076 24.3 7.0 76 191-284 22-97 (100)
231 COG2204 AtoC Response regulato 69.0 50 0.0011 31.0 9.5 113 217-338 6-127 (464)
232 cd05564 PTS_IIB_chitobiose_lic 68.8 14 0.00029 26.2 4.8 75 218-297 3-79 (96)
233 PRK00676 hemA glutamyl-tRNA re 68.5 89 0.0019 28.0 15.7 137 214-370 173-321 (338)
234 cd01020 TroA_b Metal binding p 67.9 53 0.0011 28.3 9.2 102 257-366 46-149 (264)
235 TIGR00853 pts-lac PTS system, 67.6 13 0.00028 26.2 4.4 76 218-298 7-84 (95)
236 PF04127 DFP: DNA / pantothena 66.8 22 0.00047 28.7 6.1 51 2-64 34-89 (185)
237 PRK00048 dihydrodipicolinate r 66.6 36 0.00078 29.2 7.8 42 255-298 52-93 (257)
238 PRK10494 hypothetical protein; 66.4 67 0.0014 27.6 9.3 83 213-298 119-210 (259)
239 TIGR02026 BchE magnesium-proto 65.7 22 0.00048 33.9 6.9 44 3-66 28-72 (497)
240 PRK10834 vancomycin high tempe 65.3 42 0.0009 28.4 7.6 81 214-297 81-169 (239)
241 PF00852 Glyco_transf_10: Glyc 65.0 14 0.00031 33.3 5.3 82 256-340 220-305 (349)
242 PF00185 OTCace: Aspartate/orn 64.4 67 0.0015 25.1 8.9 78 177-272 2-82 (158)
243 PRK10017 colanic acid biosynth 64.0 1.1E+02 0.0025 28.5 11.0 43 255-297 109-156 (426)
244 PRK13396 3-deoxy-7-phosphohept 63.7 1.1E+02 0.0025 27.5 11.3 107 176-296 99-215 (352)
245 TIGR03837 efp_adjacent_2 conse 63.5 1.2E+02 0.0025 27.6 10.4 106 164-295 167-286 (371)
246 PF13241 NAD_binding_7: Putati 63.5 50 0.0011 23.5 7.0 47 256-304 53-100 (103)
247 PRK06718 precorrin-2 dehydroge 63.0 84 0.0018 25.8 14.3 77 214-303 32-108 (202)
248 TIGR03677 rpl7ae 50S ribosomal 62.1 61 0.0013 23.9 7.2 78 190-284 29-107 (117)
249 PF02302 PTS_IIB: PTS system, 61.9 18 0.0004 24.9 4.4 54 218-272 3-56 (90)
250 PF01408 GFO_IDH_MocA: Oxidore 61.6 59 0.0013 23.6 8.0 68 214-296 24-93 (120)
251 COG1519 KdtA 3-deoxy-D-manno-o 61.5 1.4E+02 0.0029 27.7 11.8 113 164-296 31-153 (419)
252 PF01297 TroA: Periplasmic sol 61.4 29 0.00064 29.6 6.4 99 259-364 43-144 (256)
253 PRK12862 malic enzyme; Reviewe 60.8 1.3E+02 0.0029 30.4 11.4 99 187-295 167-290 (763)
254 KOG0832 Mitochondrial/chloropl 60.5 99 0.0022 25.8 12.5 72 242-330 160-232 (251)
255 PF00072 Response_reg: Respons 60.1 58 0.0013 23.0 8.7 94 231-328 10-112 (112)
256 COG4370 Uncharacterized protei 60.1 12 0.00026 32.5 3.6 85 255-350 303-396 (412)
257 COG3563 KpsC Capsule polysacch 60.0 50 0.0011 30.8 7.5 52 240-299 202-254 (671)
258 cd03145 GAT1_cyanophycinase Ty 59.0 1E+02 0.0023 25.5 9.5 84 215-299 29-127 (217)
259 COG0062 Uncharacterized conser 58.9 1E+02 0.0022 25.4 12.9 116 165-298 38-160 (203)
260 cd05212 NAD_bind_m-THF_DH_Cycl 58.7 80 0.0017 24.1 8.7 74 210-293 23-97 (140)
261 TIGR01286 nifK nitrogenase mol 58.7 1.8E+02 0.0038 28.1 12.0 79 167-248 168-252 (515)
262 COG1646 Predicted phosphate-bi 58.5 42 0.00091 28.0 6.3 55 214-272 40-95 (240)
263 PF02585 PIG-L: GlcNAc-PI de-N 58.2 34 0.00073 25.5 5.6 18 5-22 19-36 (128)
264 COG1927 Mtd Coenzyme F420-depe 57.6 1.1E+02 0.0023 25.2 14.7 106 180-316 7-117 (277)
265 PF10649 DUF2478: Protein of u 57.6 20 0.00042 28.1 4.1 40 257-296 86-130 (159)
266 PRK07232 bifunctional malic en 57.4 1.8E+02 0.004 29.4 11.6 99 187-295 159-282 (752)
267 TIGR02069 cyanophycinase cyano 57.3 1.2E+02 0.0027 25.8 9.4 85 214-299 27-126 (250)
268 PRK07283 hypothetical protein; 57.3 47 0.001 23.5 5.8 64 214-284 33-96 (98)
269 COG0803 LraI ABC-type metal io 57.1 76 0.0016 28.0 8.3 89 259-350 77-174 (303)
270 PF06189 5-nucleotidase: 5'-nu 56.7 1.1E+02 0.0023 26.3 8.5 87 195-293 19-106 (264)
271 COG0673 MviM Predicted dehydro 56.5 1.3E+02 0.0027 26.9 10.0 57 232-296 40-98 (342)
272 COG0496 SurE Predicted acid ph 55.9 12 0.00026 31.7 2.9 20 3-23 19-38 (252)
273 PF01012 ETF: Electron transfe 55.7 98 0.0021 24.2 8.8 90 193-295 18-120 (164)
274 PHA03392 egt ecdysteroid UDP-g 55.3 9 0.00019 36.6 2.4 19 2-20 40-58 (507)
275 PRK12861 malic enzyme; Reviewe 55.2 1.8E+02 0.0038 29.5 11.1 99 187-295 163-286 (764)
276 PRK10481 hypothetical protein; 54.6 94 0.002 26.0 7.9 91 188-297 115-214 (224)
277 PRK04169 geranylgeranylglycery 53.6 36 0.00078 28.6 5.4 55 214-272 31-85 (232)
278 TIGR00288 conserved hypothetic 53.5 1.1E+02 0.0024 24.1 7.8 66 189-269 88-154 (160)
279 PF11238 DUF3039: Protein of u 52.5 12 0.00026 23.3 1.8 16 280-295 15-30 (58)
280 PRK13601 putative L7Ae-like ri 51.9 75 0.0016 21.7 6.1 44 214-261 23-66 (82)
281 PRK13602 putative ribosomal pr 51.4 76 0.0016 21.6 6.3 54 191-260 15-68 (82)
282 KOG0780 Signal recognition par 50.8 46 0.001 30.3 5.7 62 3-66 121-192 (483)
283 TIGR01361 DAHP_synth_Bsub phos 50.8 1.4E+02 0.0031 25.6 8.8 63 231-297 77-140 (260)
284 COG1671 Uncharacterized protei 50.2 71 0.0015 24.6 5.9 73 230-306 12-84 (150)
285 PRK09590 celB cellobiose phosp 50.0 47 0.001 23.9 4.8 74 218-296 5-82 (104)
286 cd01016 TroA Metal binding pro 49.7 1E+02 0.0022 26.7 7.9 90 257-349 44-141 (276)
287 PF04392 ABC_sub_bind: ABC tra 49.2 23 0.0005 31.0 3.9 66 231-296 148-218 (294)
288 COG4394 Uncharacterized protei 49.0 1.8E+02 0.0039 25.3 12.5 172 164-368 164-368 (370)
289 cd01017 AdcA Metal binding pro 48.7 89 0.0019 27.2 7.4 102 258-366 47-167 (282)
290 COG0111 SerA Phosphoglycerate 48.4 1.9E+02 0.0042 25.8 9.5 67 215-290 142-227 (324)
291 cd00316 Oxidoreductase_nitroge 48.4 2.1E+02 0.0046 26.2 10.3 112 178-296 114-231 (399)
292 PF04413 Glycos_transf_N: 3-De 47.4 57 0.0012 26.3 5.6 100 177-296 22-125 (186)
293 PF05221 AdoHcyase: S-adenosyl 47.3 52 0.0011 28.2 5.4 62 2-67 58-131 (268)
294 cd01018 ZntC Metal binding pro 46.8 1.4E+02 0.0029 25.8 8.2 49 313-366 116-166 (266)
295 PRK13982 bifunctional SbtC-lik 46.2 46 0.001 31.4 5.4 52 1-64 286-341 (475)
296 PRK08410 2-hydroxyacid dehydro 46.2 1.8E+02 0.0038 25.8 8.9 77 214-299 144-235 (311)
297 PLN02928 oxidoreductase family 46.2 1.6E+02 0.0035 26.6 8.8 42 255-298 218-264 (347)
298 smart00851 MGS MGS-like domain 45.9 32 0.0007 23.7 3.5 52 2-65 4-63 (90)
299 PLN02929 NADH kinase 45.4 1.2E+02 0.0026 26.8 7.4 69 259-333 60-137 (301)
300 PF02630 SCO1-SenC: SCO1/SenC; 45.3 1.5E+02 0.0034 23.5 9.2 88 175-268 51-138 (174)
301 TIGR02853 spore_dpaA dipicolin 45.2 1.6E+02 0.0036 25.7 8.4 19 2-20 15-33 (287)
302 PF04273 DUF442: Putative phos 44.6 1.2E+02 0.0025 22.1 6.2 64 4-67 20-97 (110)
303 cd06259 YdcF-like YdcF-like. Y 44.5 1.4E+02 0.0031 22.7 8.4 74 214-290 34-119 (150)
304 PRK10310 PTS system galactitol 44.1 33 0.00073 24.1 3.3 54 218-272 6-59 (94)
305 COG2120 Uncharacterized protei 44.0 71 0.0015 27.0 5.8 18 5-22 32-49 (237)
306 TIGR01658 EYA-cons_domain eyes 43.8 89 0.0019 26.5 6.0 54 196-264 216-269 (274)
307 PRK13397 3-deoxy-7-phosphohept 43.7 2.1E+02 0.0045 24.5 11.0 101 183-297 20-130 (250)
308 PRK04207 glyceraldehyde-3-phos 43.0 1.5E+02 0.0033 26.6 8.1 39 256-296 71-109 (341)
309 PF02826 2-Hacid_dh_C: D-isome 42.9 1.7E+02 0.0037 23.3 8.8 40 255-296 83-127 (178)
310 PRK04531 acetylglutamate kinas 42.9 1.9E+02 0.004 26.8 8.7 55 175-247 35-91 (398)
311 TIGR00075 hypD hydrogenase exp 42.9 2E+02 0.0044 26.0 8.4 84 213-298 134-227 (369)
312 TIGR01761 thiaz-red thiazoliny 42.4 2.4E+02 0.0053 25.4 9.2 91 177-296 3-97 (343)
313 TIGR01278 DPOR_BchB light-inde 42.3 3.2E+02 0.007 26.3 13.7 76 215-295 158-239 (511)
314 PRK05447 1-deoxy-D-xylulose 5- 42.3 2.7E+02 0.006 25.5 9.4 95 175-296 25-122 (385)
315 PRK06487 glycerate dehydrogena 42.2 1.9E+02 0.0042 25.6 8.6 77 214-299 147-236 (317)
316 PRK00994 F420-dependent methyl 41.9 2.1E+02 0.0046 24.1 13.9 106 181-317 8-118 (277)
317 PRK09545 znuA high-affinity zi 41.8 1.9E+02 0.0042 25.6 8.5 44 320-366 154-199 (311)
318 COG1979 Uncharacterized oxidor 41.2 2E+02 0.0044 25.7 8.0 105 177-295 56-167 (384)
319 COG3181 Uncharacterized protei 41.2 2.6E+02 0.0057 24.9 9.4 158 183-363 128-303 (319)
320 PRK06932 glycerate dehydrogena 41.1 2E+02 0.0043 25.5 8.5 77 214-299 146-236 (314)
321 COG0281 SfcA Malic enzyme [Ene 40.9 3E+02 0.0065 25.5 10.5 99 187-295 173-298 (432)
322 COG3414 SgaB Phosphotransferas 40.8 40 0.00086 23.7 3.2 54 218-272 5-58 (93)
323 TIGR01012 Sa_S2_E_A ribosomal 40.7 2E+02 0.0044 23.5 11.4 105 215-332 61-169 (196)
324 cd01137 PsaA Metal binding pro 40.4 2E+02 0.0042 25.2 8.2 87 258-349 61-157 (287)
325 PRK10430 DNA-binding transcrip 40.3 2.2E+02 0.0047 23.8 10.3 64 264-330 50-120 (239)
326 TIGR02154 PhoB phosphate regul 40.2 2E+02 0.0043 23.2 9.7 107 217-332 4-121 (226)
327 KOG2648 Diphthamide biosynthes 40.2 1.1E+02 0.0025 28.3 6.6 75 215-294 267-343 (453)
328 cd01019 ZnuA Zinc binding prot 39.9 2.5E+02 0.0055 24.4 9.0 89 258-350 47-162 (286)
329 TIGR00036 dapB dihydrodipicoli 39.7 1.9E+02 0.0042 24.9 8.0 43 255-299 60-102 (266)
330 COG2949 SanA Uncharacterized m 39.7 2.2E+02 0.0047 23.5 8.3 82 217-301 96-185 (235)
331 PF03698 UPF0180: Uncharacteri 39.6 22 0.00049 24.1 1.7 19 2-20 12-30 (80)
332 PRK13837 two-component VirA-li 39.4 2.4E+02 0.0053 29.0 9.9 104 217-332 699-813 (828)
333 PF00205 TPP_enzyme_M: Thiamin 39.0 54 0.0012 24.7 4.0 56 215-271 12-85 (137)
334 PF07592 DDE_Tnp_ISAZ013: Rhod 38.9 2E+02 0.0043 25.5 7.7 71 179-253 149-224 (311)
335 PLN03129 NADP-dependent malic 38.9 3.8E+02 0.0083 26.2 11.4 82 212-295 318-434 (581)
336 PF12996 DUF3880: DUF based on 38.7 53 0.0011 22.1 3.5 44 105-155 14-57 (79)
337 PRK09483 response regulator; P 38.6 2.1E+02 0.0045 23.0 10.4 67 264-333 48-121 (217)
338 COG4565 CitB Response regulato 38.5 2.3E+02 0.005 23.5 8.2 59 275-335 57-122 (224)
339 PF01884 PcrB: PcrB family; I 38.4 1.2E+02 0.0025 25.6 6.0 53 214-272 31-84 (230)
340 cd01967 Nitrogenase_MoFe_alpha 38.3 3.2E+02 0.007 25.2 15.6 120 189-333 135-258 (406)
341 COG1618 Predicted nucleotide k 38.3 1.1E+02 0.0024 24.2 5.5 74 257-332 94-176 (179)
342 PRK13302 putative L-aspartate 38.0 1.6E+02 0.0034 25.5 7.2 71 214-298 30-100 (271)
343 PF00532 Peripla_BP_1: Peripla 37.8 2.7E+02 0.0058 24.1 17.6 156 52-248 51-211 (279)
344 PRK03094 hypothetical protein; 37.8 25 0.00055 23.8 1.7 18 2-19 12-29 (80)
345 PF13263 PHP_C: PHP-associated 37.6 16 0.00035 22.7 0.8 44 283-328 9-52 (56)
346 PF00240 ubiquitin: Ubiquitin 37.3 37 0.0008 21.8 2.5 55 113-181 10-64 (69)
347 COG1819 Glycosyl transferases, 37.2 28 0.00061 32.2 2.6 20 2-21 20-39 (406)
348 PRK14982 acyl-ACP reductase; P 37.1 3.2E+02 0.0068 24.7 11.3 108 256-369 208-330 (340)
349 PRK13761 hypothetical protein; 37.1 2.5E+02 0.0054 23.5 8.6 95 261-369 148-243 (248)
350 PRK15438 erythronate-4-phospha 37.0 3.4E+02 0.0073 25.0 10.3 77 213-298 114-209 (378)
351 cd01423 MGS_CPS_I_III Methylgl 36.9 46 0.00099 24.3 3.3 51 2-64 17-78 (116)
352 PRK05749 3-deoxy-D-manno-octul 36.7 2.1E+02 0.0046 26.4 8.4 102 175-296 49-154 (425)
353 PF03401 TctC: Tripartite tric 36.6 2.8E+02 0.0061 24.0 11.4 145 178-345 79-244 (274)
354 PF00201 UDPGT: UDP-glucoronos 36.6 12 0.00025 35.7 -0.0 19 2-20 18-36 (500)
355 TIGR00670 asp_carb_tr aspartat 36.5 3E+02 0.0065 24.3 9.3 87 165-272 139-225 (301)
356 PRK08125 bifunctional UDP-gluc 36.5 62 0.0013 32.2 5.0 62 4-65 16-83 (660)
357 COG0036 Rpe Pentose-5-phosphat 36.4 1.3E+02 0.0029 25.0 6.0 72 190-279 71-145 (220)
358 PRK14077 pnk inorganic polypho 36.0 2.4E+02 0.0051 24.7 7.9 57 262-333 63-120 (287)
359 cd05312 NAD_bind_1_malic_enz N 36.0 3E+02 0.0064 24.0 12.1 40 255-295 95-138 (279)
360 COG1090 Predicted nucleoside-d 35.9 53 0.0011 28.4 3.7 21 2-22 13-33 (297)
361 PF13788 DUF4180: Domain of un 35.9 1.2E+02 0.0027 22.1 5.1 42 214-257 68-109 (113)
362 cd00287 ribokinase_pfkB_like r 35.4 1.4E+02 0.0031 23.7 6.4 11 58-68 58-68 (196)
363 PF03853 YjeF_N: YjeF-related 35.3 2.2E+02 0.0049 22.4 12.7 119 165-298 14-140 (169)
364 COG1440 CelA Phosphotransferas 35.2 1.5E+02 0.0033 21.2 5.3 74 218-296 5-80 (102)
365 PRK06683 hypothetical protein; 35.1 1.5E+02 0.0032 20.2 6.2 40 214-257 26-65 (82)
366 PF00389 2-Hacid_dh: D-isomer 34.8 1.9E+02 0.0042 21.5 9.7 53 247-303 20-74 (133)
367 PTZ00254 40S ribosomal protein 34.8 2.9E+02 0.0063 23.6 11.1 104 187-304 50-157 (249)
368 COG3613 Nucleoside 2-deoxyribo 34.7 2E+02 0.0043 22.9 6.4 82 215-296 4-105 (172)
369 cd00532 MGS-like MGS-like doma 34.6 57 0.0012 23.7 3.4 51 2-64 16-75 (112)
370 TIGR00337 PyrG CTP synthase. C 34.6 4.3E+02 0.0093 25.5 16.3 165 109-297 204-380 (525)
371 COG1703 ArgK Putative periplas 34.6 1.3E+02 0.0029 26.4 5.9 32 177-210 229-260 (323)
372 cd00762 NAD_bind_malic_enz NAD 34.5 3E+02 0.0065 23.6 11.2 40 255-295 96-139 (254)
373 COG2454 Uncharacterized conser 34.3 2.6E+02 0.0056 22.9 7.8 65 187-254 104-168 (211)
374 TIGR00936 ahcY adenosylhomocys 33.9 1E+02 0.0022 28.6 5.5 61 2-66 47-115 (406)
375 PF03949 Malic_M: Malic enzyme 33.2 3.1E+02 0.0068 23.5 10.6 82 212-295 22-139 (255)
376 PRK13181 hisH imidazole glycer 33.2 1.6E+02 0.0035 23.9 6.2 61 231-297 11-80 (199)
377 PRK05331 putative phosphate ac 33.1 3.6E+02 0.0079 24.2 11.3 52 186-252 9-61 (334)
378 PF06345 Drf_DAD: DRF Autoregu 33.0 38 0.00083 14.3 1.2 10 281-290 5-14 (15)
379 PRK08673 3-deoxy-7-phosphohept 33.0 3.7E+02 0.008 24.2 9.8 102 182-297 97-208 (335)
380 PRK09581 pleD response regulat 32.9 4E+02 0.0086 24.6 11.7 107 217-332 4-121 (457)
381 PRK08306 dipicolinate synthase 32.9 2.4E+02 0.0052 24.8 7.6 40 257-296 49-101 (296)
382 COG4588 AcfC Accessory coloniz 32.5 2.6E+02 0.0057 23.0 6.8 100 214-316 19-133 (252)
383 PF01993 MTD: methylene-5,6,7, 32.5 2.7E+02 0.0058 23.6 7.0 85 213-317 28-117 (276)
384 PRK13304 L-aspartate dehydroge 32.4 2E+02 0.0043 24.7 6.9 43 255-299 53-95 (265)
385 TIGR00640 acid_CoA_mut_C methy 32.3 2.2E+02 0.0048 21.5 9.1 14 137-150 29-42 (132)
386 PF06506 PrpR_N: Propionate ca 32.3 2.1E+02 0.0046 22.7 6.6 95 232-332 64-165 (176)
387 cd00027 BRCT Breast Cancer Sup 32.2 87 0.0019 19.5 3.8 64 216-296 2-65 (72)
388 PRK13529 malate dehydrogenase; 32.2 4.9E+02 0.011 25.4 10.3 39 256-295 373-415 (563)
389 PRK05476 S-adenosyl-L-homocyst 31.9 1.2E+02 0.0027 28.2 5.7 61 2-66 63-132 (425)
390 cd01836 FeeA_FeeB_like SGNH_hy 31.8 2.6E+02 0.0057 22.2 8.0 44 177-223 69-114 (191)
391 PF02142 MGS: MGS-like domain 31.8 85 0.0018 21.9 3.8 52 2-65 4-68 (95)
392 PF03447 NAD_binding_3: Homose 31.8 65 0.0014 23.5 3.4 45 255-301 49-95 (117)
393 COG0062 Uncharacterized conser 31.6 1.2E+02 0.0026 24.9 5.1 20 3-22 68-87 (203)
394 PRK12595 bifunctional 3-deoxy- 31.2 4.1E+02 0.0089 24.2 11.5 95 190-297 129-233 (360)
395 TIGR01544 HAD-SF-IE haloacid d 31.1 3.6E+02 0.0077 23.5 9.8 61 214-284 210-275 (277)
396 cd05566 PTS_IIB_galactitol PTS 31.1 71 0.0015 21.9 3.3 54 218-272 4-57 (89)
397 PRK06988 putative formyltransf 31.1 94 0.002 27.6 4.8 63 3-65 17-85 (312)
398 PF02639 DUF188: Uncharacteriz 30.9 56 0.0012 24.6 2.8 19 326-344 85-103 (130)
399 PRK04885 ppnK inorganic polyph 30.8 3.5E+02 0.0076 23.3 8.1 53 263-333 35-93 (265)
400 PRK01018 50S ribosomal protein 30.7 2E+02 0.0043 20.4 6.0 47 214-263 31-77 (99)
401 cd01409 SIRT4 SIRT4: Eukaryoti 30.7 1.2E+02 0.0026 26.1 5.2 54 245-299 180-241 (260)
402 PRK02261 methylaspartate mutas 30.7 2.4E+02 0.0052 21.4 9.7 46 214-262 84-131 (137)
403 KOG2764 Putative transcription 30.5 77 0.0017 26.5 3.7 53 4-67 25-77 (247)
404 TIGR03682 arCOG04112 arCOG0411 30.5 2.5E+02 0.0054 24.9 7.2 70 219-295 217-289 (308)
405 PF07997 DUF1694: Protein of u 30.3 2.1E+02 0.0045 21.3 5.7 67 165-245 23-90 (120)
406 cd02067 B12-binding B12 bindin 30.3 62 0.0013 23.6 3.1 17 49-65 42-58 (119)
407 PF13377 Peripla_BP_3: Peripla 30.2 1.2E+02 0.0026 23.1 4.9 73 4-76 1-87 (160)
408 PRK13125 trpA tryptophan synth 30.1 3.4E+02 0.0074 23.0 8.7 71 189-272 87-160 (244)
409 PF03037 KMP11: Kinetoplastid 30.0 1.3E+02 0.0028 19.6 3.9 29 320-350 5-33 (90)
410 cd02068 radical_SAM_B12_BD B12 30.0 1.2E+02 0.0026 22.5 4.6 16 3-18 8-23 (127)
411 PF03575 Peptidase_S51: Peptid 29.9 1.1E+02 0.0025 23.6 4.6 65 232-298 2-78 (154)
412 PF05014 Nuc_deoxyrib_tr: Nucl 29.9 57 0.0012 23.6 2.8 38 259-297 57-97 (113)
413 TIGR00272 DPH2 diphthamide bio 29.9 2.9E+02 0.0064 26.4 8.0 75 215-295 282-359 (496)
414 PF00731 AIRC: AIR carboxylase 29.8 1.9E+02 0.0042 22.4 5.6 11 332-342 131-141 (150)
415 PTZ00106 60S ribosomal protein 29.7 2.2E+02 0.0048 20.6 6.4 47 214-263 40-86 (108)
416 COG2085 Predicted dinucleotide 29.6 1E+02 0.0022 25.4 4.3 57 3-69 16-72 (211)
417 COG1736 DPH2 Diphthamide synth 29.5 2.8E+02 0.0061 25.0 7.3 77 215-296 239-316 (347)
418 TIGR02015 BchY chlorophyllide 29.4 4.7E+02 0.01 24.4 9.7 133 177-337 117-264 (422)
419 COG2247 LytB Putative cell wal 29.4 3.4E+02 0.0073 24.1 7.5 73 214-297 76-163 (337)
420 cd02065 B12-binding_like B12 b 29.4 1.7E+02 0.0037 21.3 5.4 15 53-67 46-60 (125)
421 PF02951 GSH-S_N: Prokaryotic 29.2 45 0.00097 24.7 2.0 19 3-21 23-41 (119)
422 KOG2741 Dimeric dihydrodiol de 29.1 4E+02 0.0086 24.0 8.0 60 231-296 42-103 (351)
423 TIGR00377 ant_ant_sig anti-ant 29.1 1.9E+02 0.004 20.4 5.4 46 189-251 58-103 (108)
424 PRK06988 putative formyltransf 29.1 3.6E+02 0.0077 23.9 8.1 12 234-245 46-57 (312)
425 PRK10643 DNA-binding transcrip 29.0 3E+02 0.0066 22.0 10.4 97 231-332 12-117 (222)
426 PF01370 Epimerase: NAD depend 29.0 47 0.001 27.5 2.5 56 2-65 13-73 (236)
427 COG0512 PabA Anthranilate/para 28.8 94 0.002 25.2 3.9 20 1-20 15-34 (191)
428 PRK15062 hydrogenase isoenzyme 28.7 4.5E+02 0.0097 23.9 8.5 84 213-298 128-221 (364)
429 PF03435 Saccharop_dh: Sacchar 28.7 2.9E+02 0.0063 25.2 7.8 71 214-295 21-97 (386)
430 cd02812 PcrB_like PcrB_like pr 28.6 1.8E+02 0.0038 24.3 5.6 54 214-272 24-79 (219)
431 PRK05380 pyrG CTP synthetase; 28.4 5.5E+02 0.012 24.8 18.0 219 56-297 131-380 (533)
432 PF13277 YmdB: YmdB-like prote 28.2 3.6E+02 0.0077 23.1 7.3 82 181-272 1-87 (253)
433 PF01531 Glyco_transf_11: Glyc 27.9 2.2E+02 0.0048 25.0 6.5 63 192-271 190-255 (298)
434 PRK11466 hybrid sensory histid 27.7 6.2E+02 0.013 26.3 10.8 110 214-332 680-799 (914)
435 PRK09468 ompR osmolarity respo 27.7 3.5E+02 0.0075 22.2 11.2 110 214-332 4-122 (239)
436 PF11997 DUF3492: Domain of un 27.6 70 0.0015 27.6 3.3 36 56-94 171-206 (268)
437 PLN02819 lysine-ketoglutarate 27.6 3.2E+02 0.007 29.0 8.3 70 218-296 608-679 (1042)
438 PRK01710 murD UDP-N-acetylmura 27.6 2.3E+02 0.005 26.7 7.1 58 2-65 28-85 (458)
439 PLN00203 glutamyl-tRNA reducta 27.6 5.7E+02 0.012 24.7 17.8 78 217-303 292-374 (519)
440 PRK12342 hypothetical protein; 27.5 1.4E+02 0.0031 25.6 5.0 22 2-23 42-63 (254)
441 TIGR01819 F420_cofD LPPG:FO 2- 27.3 66 0.0014 28.2 3.0 34 308-343 255-294 (297)
442 TIGR02990 ectoine_eutA ectoine 27.2 3.2E+02 0.0069 23.2 7.1 76 217-298 122-215 (239)
443 PRK14177 bifunctional 5,10-met 27.1 2.9E+02 0.0064 24.1 6.9 38 214-252 34-71 (284)
444 PRK01438 murD UDP-N-acetylmura 26.9 1.4E+02 0.0031 28.2 5.6 58 2-66 30-87 (480)
445 CHL00200 trpA tryptophan synth 26.9 4.1E+02 0.009 22.9 9.4 116 182-314 96-231 (263)
446 TIGR00322 diphth2_R diphthamid 26.9 3.1E+02 0.0067 24.7 7.2 71 219-295 237-310 (332)
447 PRK13793 nicotinamide-nucleoti 26.8 1.6E+02 0.0034 24.1 4.9 22 179-200 6-28 (196)
448 cd00401 AdoHcyase S-adenosyl-L 26.8 1.6E+02 0.0035 27.4 5.6 61 2-66 51-122 (413)
449 PF04312 DUF460: Protein of un 26.7 1.9E+02 0.0042 22.0 4.9 29 278-306 65-94 (138)
450 PRK06719 precorrin-2 dehydroge 26.6 3.1E+02 0.0067 21.4 10.9 68 261-332 68-141 (157)
451 PF14639 YqgF: Holliday-juncti 26.6 96 0.0021 24.1 3.6 72 187-268 43-119 (150)
452 COG1152 CdhA CO dehydrogenase/ 26.6 5.1E+02 0.011 25.3 8.6 74 217-297 238-332 (772)
453 TIGR00460 fmt methionyl-tRNA f 26.5 1.5E+02 0.0033 26.2 5.3 62 4-65 16-86 (313)
454 cd01424 MGS_CPS_II Methylglyox 26.4 1.1E+02 0.0025 21.9 3.8 51 2-64 17-74 (110)
455 KOG2756 Predicted Mg2+-depende 26.4 1.5E+02 0.0032 25.6 4.7 23 48-70 121-143 (349)
456 PRK09190 hypothetical protein; 26.3 3.1E+02 0.0068 22.9 6.7 68 214-287 126-199 (220)
457 PF07302 AroM: AroM protein; 26.2 3.9E+02 0.0085 22.4 8.4 38 257-296 170-209 (221)
458 PF09001 DUF1890: Domain of un 26.0 63 0.0014 24.5 2.3 19 2-20 18-36 (139)
459 PF00148 Oxidored_nitro: Nitro 25.9 5.2E+02 0.011 23.7 16.4 118 166-296 99-223 (398)
460 TIGR03445 mycothiol_MshB 1D-my 25.9 2E+02 0.0044 25.1 5.8 17 6-22 20-36 (284)
461 PRK10886 DnaA initiator-associ 25.7 3.7E+02 0.008 21.9 7.1 55 214-272 110-166 (196)
462 COG4874 Uncharacterized protei 25.7 76 0.0017 26.6 2.9 21 2-22 61-81 (318)
463 TIGR03316 ygeW probable carbam 25.7 5.1E+02 0.011 23.6 10.2 53 214-271 200-253 (357)
464 COG1628 Endonuclease V homolog 25.6 3.1E+02 0.0067 22.2 6.2 61 265-344 71-133 (185)
465 PRK14106 murD UDP-N-acetylmura 25.6 1.8E+02 0.0038 27.3 5.9 59 2-66 19-77 (450)
466 PF13169 Poxvirus_B22R_N: Poxv 25.5 2.4E+02 0.0052 19.8 5.0 28 345-372 43-70 (92)
467 PF14597 Lactamase_B_5: Metall 25.5 1.6E+02 0.0035 23.7 4.6 43 191-241 156-198 (199)
468 PF02593 dTMP_synthase: Thymid 25.5 3.2E+02 0.0069 22.8 6.5 56 173-244 49-104 (217)
469 PF02006 DUF137: Protein of un 25.5 3.5E+02 0.0075 21.5 7.2 88 261-362 87-175 (178)
470 COG3456 Predicted component of 25.4 1.7E+02 0.0036 27.0 5.2 81 264-363 294-374 (430)
471 PRK06849 hypothetical protein; 25.3 43 0.00093 30.7 1.7 60 1-67 18-86 (389)
472 PF13344 Hydrolase_6: Haloacid 25.2 78 0.0017 22.5 2.7 38 2-43 21-58 (101)
473 PRK03501 ppnK inorganic polyph 25.2 4E+02 0.0087 23.0 7.4 55 262-333 38-97 (264)
474 PRK08374 homoserine dehydrogen 25.2 3.8E+02 0.0081 24.1 7.6 41 256-298 82-124 (336)
475 PRK11475 DNA-binding transcrip 25.1 2.5E+02 0.0053 23.1 6.0 56 276-333 52-115 (207)
476 PF00185 OTCace: Aspartate/orn 25.0 1.5E+02 0.0032 23.2 4.4 62 2-65 18-81 (158)
477 PRK14172 bifunctional 5,10-met 24.9 3.1E+02 0.0067 23.9 6.6 38 214-252 33-70 (278)
478 KOG2619 Fucosyltransferase [Ca 24.9 2.1E+02 0.0046 26.0 5.8 56 281-340 269-326 (372)
479 PRK10161 transcriptional regul 24.8 3.8E+02 0.0082 21.8 10.9 107 217-332 4-121 (229)
480 TIGR00421 ubiX_pad polyprenyl 24.8 67 0.0015 25.8 2.5 20 2-21 17-36 (181)
481 PLN02527 aspartate carbamoyltr 24.6 5E+02 0.011 23.0 9.2 88 165-272 140-227 (306)
482 PRK10336 DNA-binding transcrip 24.6 3.7E+02 0.008 21.5 10.4 66 264-332 45-117 (219)
483 PLN03007 UDP-glucosyltransfera 24.6 50 0.0011 31.4 2.0 21 1-21 23-43 (482)
484 TIGR03795 chp_BMA0021 conserve 24.6 1.2E+02 0.0026 22.3 3.4 34 321-354 15-48 (114)
485 PRK13846 putative glycerol-3-p 24.5 3.1E+02 0.0068 24.4 6.6 52 186-252 10-64 (316)
486 PRK14192 bifunctional 5,10-met 24.5 4.2E+02 0.0091 23.2 7.5 53 213-271 157-210 (283)
487 TIGR03787 marine_sort_RR prote 24.5 3.8E+02 0.0083 21.7 10.4 96 231-332 12-119 (227)
488 PLN02208 glycosyltransferase f 24.4 50 0.0011 31.0 1.9 20 1-20 22-41 (442)
489 CHL00148 orf27 Ycf27; Reviewed 24.4 3.9E+02 0.0085 21.8 11.2 110 214-332 5-122 (240)
490 PF00763 THF_DHG_CYH: Tetrahyd 24.3 2.9E+02 0.0063 20.2 5.8 38 214-252 30-67 (117)
491 PRK08818 prephenate dehydrogen 24.2 4.9E+02 0.011 23.8 8.1 15 282-296 94-109 (370)
492 cd01979 Pchlide_reductase_N Pc 24.1 5.7E+02 0.012 23.5 11.6 94 189-297 134-231 (396)
493 PRK14175 bifunctional 5,10-met 24.1 4.7E+02 0.01 22.9 7.6 55 212-272 155-210 (286)
494 PF13450 NAD_binding_8: NAD(P) 23.7 80 0.0017 20.4 2.3 19 3-21 11-29 (68)
495 CHL00076 chlB photochlorophyll 23.7 6.7E+02 0.014 24.2 15.9 76 215-295 163-244 (513)
496 cd01410 SIRT7 SIRT7: Eukaryoti 23.7 2E+02 0.0043 23.7 5.2 53 245-298 131-191 (206)
497 PF11814 DUF3335: Peptidase_C3 23.5 2.2E+02 0.0049 23.4 5.2 45 3-47 59-116 (207)
498 PRK11891 aspartate carbamoyltr 23.4 6.2E+02 0.013 23.7 9.6 89 165-272 226-317 (429)
499 PF04244 DPRP: Deoxyribodipyri 23.4 70 0.0015 26.8 2.4 51 3-70 54-104 (224)
500 PF03568 Peptidase_C50: Peptid 23.3 3.7E+02 0.008 24.7 7.3 93 187-296 267-374 (383)
No 1
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.5e-44 Score=325.34 Aligned_cols=335 Identities=19% Similarity=0.221 Sum_probs=255.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc-----------chhHHHhhhcccEEEEcCchhhh
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----------GQETINTALKADLIVLNTAVAGK 70 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Div~~~~~~~~~ 70 (377)
+|++.|.+.||++++++...... +...+...|+.++... .+..++++.+||+||+|+..+..
T Consensus 22 ~l~~~l~~~~~~~~v~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~Divh~~~~~~~~ 94 (374)
T TIGR03088 22 NLINHLPADRYRHAVVALTEVSA-------FRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQLRPDIVHTRNLAALE 94 (374)
T ss_pred HHHhhccccccceEEEEcCCCCh-------hHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHHhCCCEEEEcchhHHH
Confidence 68899999999999998543321 2233333455543322 23455677899999999754332
Q ss_pred HHHHHhhcCCCccccceeEEeeeecccc-----cc-hhhhc-cccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEE
Q 017085 71 WLDAVLKEDVPRVLPNVLWWIHEMRGHY-----FK-LDYVK-HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 143 (377)
Q Consensus 71 ~~~~~~~~~~~~~~~~~v~~~h~~~~~~-----~~-~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ 143 (377)
.......... +..+.+.|...... +. ....+ ..+.++.++++|....+++.+ .++++..++.+||
T Consensus 95 ~~~~~~~~~~----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~~----~~~~~~~~~~vi~ 166 (374)
T TIGR03088 95 AQLPAALAGV----PARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRG----PVKVPPAKIHQIY 166 (374)
T ss_pred HHHHHHhcCC----CeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHHHHH----hcCCChhhEEEec
Confidence 2122112222 22344444321110 10 11111 224678999999988887765 5667778999999
Q ss_pred cCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEec
Q 017085 144 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 223 (377)
Q Consensus 144 ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~ 223 (377)
||+|.+.+.+.... +...++....+++.++++++||+.+.||++.+++++..+.+...+ ..++++|+++|+
T Consensus 167 ngvd~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~---~~~~~~l~i~G~ 237 (374)
T TIGR03088 167 NGVDTERFHPSRGD------RSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPE---GAERLRLVIVGD 237 (374)
T ss_pred cCccccccCCCccc------hhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcc---cccceEEEEecC
Confidence 99998876543211 122334444556789999999999999999999999987654322 124799999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccc
Q 017085 224 DMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 303 (377)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~ 303 (377)
| +..+.+++.++++++.+++.|.|+.+++.++|+.||++++||. .||||++++|||+||+|||+|+.|+..|+
T Consensus 238 g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~--~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~ 310 (374)
T TIGR03088 238 G-----PARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSL--AEGISNTILEAMASGLPVIATAVGGNPEL 310 (374)
T ss_pred C-----chHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccc--cccCchHHHHHHHcCCCEEEcCCCCcHHH
Confidence 8 4567889999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred eecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017085 304 VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 304 ~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 369 (377)
+.++.+|++++++| +++++++|.+++++++.+.++++++++.+.++|||+.+++++.++|++++
T Consensus 311 i~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~ 374 (374)
T TIGR03088 311 VQHGVTGALVPPGD--AVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQLL 374 (374)
T ss_pred hcCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 99999999999988 99999999999999999999999999999999999999999999998763
No 2
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=3.8e-43 Score=323.13 Aligned_cols=336 Identities=20% Similarity=0.206 Sum_probs=256.6
Q ss_pred CcHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc----------------------chhHHHh--hh
Q 017085 1 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK----------------------GQETINT--AL 56 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~--~~ 56 (377)
++|+++|.++||+|+|+|........... ....|+.+.... .+..+++ ..
T Consensus 27 ~~la~~L~~~G~~V~v~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (405)
T TIGR03449 27 LETATELARRGIEVDIFTRATRPSQPPVV------EVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHEPG 100 (405)
T ss_pred HHHHHHHhhCCCEEEEEecccCCCCCCcc------ccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 37899999999999999965432111000 011233333210 0111122 24
Q ss_pred cccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccc---c------cc----hh-hhccccccceeeeeccchhh
Q 017085 57 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH---Y------FK----LD-YVKHLPLVAGAMIDSHVTAE 122 (377)
Q Consensus 57 ~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~---~------~~----~~-~~~~~~~~~~~~~~s~~~~~ 122 (377)
+||+||+|....+.+...+.. ....|++.+.|+.... + .. .. ....+..+|.+++.|....+
T Consensus 101 ~~Diih~h~~~~~~~~~~~~~----~~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~~ 176 (405)
T TIGR03449 101 YYDLIHSHYWLSGQVGWLLRD----RWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEAR 176 (405)
T ss_pred CCCeEEechHHHHHHHHHHHH----hcCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHHH
Confidence 799999998554433222221 1124789999976320 0 00 00 12345788999999998777
Q ss_pred HhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHH
Q 017085 123 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 202 (377)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l 202 (377)
.+.. .++.+.+++.+||||+|.+.+.+.. +...++++++++++++|+++||+.+.||++.++++++.+
T Consensus 177 ~~~~----~~~~~~~ki~vi~ngvd~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l 244 (405)
T TIGR03449 177 DLVR----HYDADPDRIDVVAPGADLERFRPGD--------RATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAEL 244 (405)
T ss_pred HHHH----HcCCChhhEEEECCCcCHHHcCCCc--------HHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHH
Confidence 6654 5667778899999999998775332 345677889888889999999999999999999999987
Q ss_pred HHHHhhhcccCCC--eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCcc
Q 017085 203 LELIKEKKLEVPS--VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 278 (377)
Q Consensus 203 ~~~l~~~~~~~~~--~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~ 278 (377)
.+ +.++ ++|+|+|++.....+..++++++++++++.++|+|+|+. +++.++|+.||++++||. .|++
T Consensus 245 ~~-------~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~--~E~~ 315 (405)
T TIGR03449 245 LD-------RDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSY--NESF 315 (405)
T ss_pred Hh-------hCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCC--CCCc
Confidence 55 3354 999999974322213567899999999999999999986 789999999999999999 9999
Q ss_pred chHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 017085 279 GRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMA 358 (377)
Q Consensus 279 ~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 358 (377)
|++++|||++|+|||+++.|+.+|++.++.+|++++++| +++++++|.+++++++.+.+++.++++.+ ++|||+.++
T Consensus 316 g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d--~~~la~~i~~~l~~~~~~~~~~~~~~~~~-~~fsw~~~~ 392 (405)
T TIGR03449 316 GLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHD--PADWADALARLLDDPRTRIRMGAAAVEHA-AGFSWAATA 392 (405)
T ss_pred ChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHH
Confidence 999999999999999999999999999999999999888 99999999999999999999999999876 679999999
Q ss_pred HHHHHHHHHHHh
Q 017085 359 ERIAVVLKEVLK 370 (377)
Q Consensus 359 ~~~~~~~~~~~~ 370 (377)
+++.++|.+++.
T Consensus 393 ~~~~~~y~~~~~ 404 (405)
T TIGR03449 393 DGLLSSYRDALA 404 (405)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 3
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=2.5e-43 Score=321.39 Aligned_cols=278 Identities=19% Similarity=0.210 Sum_probs=230.3
Q ss_pred hhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc------cchhhhccccccceeeeeccchhhHhhhh
Q 017085 54 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVTAEYWKNR 127 (377)
Q Consensus 54 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 127 (377)
+..+||+||+|....+.....+..... ...+.+++.|+..... +...+...++.+|.++++|....+.+.
T Consensus 115 ~~~~~diihaH~~~~~~~~~~~~~~~~--~~~~~~~t~Hg~d~~~~~~~~~~~~~~~~~~~~ad~vv~~S~~~~~~l~-- 190 (406)
T PRK15427 115 TPFVADVFIAHFGPAGVTAAKLRELGV--LRGKIATIFHGIDISSREVLNHYTPEYQQLFRRGDLMLPISDLWAGRLQ-- 190 (406)
T ss_pred ccCCCCEEEEcCChHHHHHHHHHHhCC--CCCCeEEEEcccccccchhhhhhhHHHHHHHHhCCEEEECCHHHHHHHH--
Confidence 456899999998766544433332111 1235677899753211 122345566889999999998887765
Q ss_pred hhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHh
Q 017085 128 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIK 207 (377)
Q Consensus 128 ~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~ 207 (377)
.+|.+.+++.++|||+|.+.|.+.... .+.+.+.|+++||+.+.||++.++++++.+.+
T Consensus 191 ---~~g~~~~ki~vi~nGvd~~~f~~~~~~---------------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~--- 249 (406)
T PRK15427 191 ---KMGCPPEKIAVSRMGVDMTRFSPRPVK---------------APATPLEIISVARLTEKKGLHVAIEACRQLKE--- 249 (406)
T ss_pred ---HcCCCHHHEEEcCCCCCHHHcCCCccc---------------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHh---
Confidence 457778899999999999877532211 01456789999999999999999999997754
Q ss_pred hhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCC----CCCccchH
Q 017085 208 EKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA----WGECFGRI 281 (377)
Q Consensus 208 ~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~----~~e~~~~~ 281 (377)
+.++++++|+|+| +..+++++.++++++.++|.|+|++ +++.++|+.||++++||.. ..||+|++
T Consensus 250 ----~~~~~~l~ivG~G-----~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~ 320 (406)
T PRK15427 250 ----QGVAFRYRILGIG-----PWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVA 320 (406)
T ss_pred ----hCCCEEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHH
Confidence 3478999999998 5788999999999999999999986 6899999999999999972 13999999
Q ss_pred HHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 017085 282 TIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAER 360 (377)
Q Consensus 282 ~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 360 (377)
++|||++|+|||+|+.+|++|++.++.+|++++++| +++++++|.++++ |++.+.+|++++++.+.++|+|+.++++
T Consensus 321 llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv~~~d--~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~ 398 (406)
T PRK15427 321 LMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPEND--AQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRE 398 (406)
T ss_pred HHHHHhCCCCEEEeCCCCchhhhcCCCceEEeCCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999999999988 9999999999999 9999999999999999999999999999
Q ss_pred HHHHHHH
Q 017085 361 IAVVLKE 367 (377)
Q Consensus 361 ~~~~~~~ 367 (377)
+.++|++
T Consensus 399 l~~~~~~ 405 (406)
T PRK15427 399 LASLLQA 405 (406)
T ss_pred HHHHHhh
Confidence 9999976
No 4
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=2.3e-42 Score=316.43 Aligned_cols=325 Identities=18% Similarity=0.162 Sum_probs=246.1
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc------------------cchhHHHhhhcccEEEE
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------------------KGQETINTALKADLIVL 63 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~Div~~ 63 (377)
+|+++|.++||+|+|+|...+.... ......|+.+... ..+..++.+.+||+||+
T Consensus 22 ~la~~L~~~G~~V~v~~~~~~~~~~-------~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~DiIh~ 94 (398)
T cd03796 22 QLSQCLIKRGHKVVVITHAYGNRVG-------IRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLLRNILIRERITIVHG 94 (398)
T ss_pred HHHHHHHHcCCeeEEEeccCCcCCC-------cccccCceeEEEecceeccCCccccchhhhHHHHHHHHHhcCCCEEEE
Confidence 6899999999999999965332110 0011122222111 12234445689999999
Q ss_pred cCchhhhHHHHHhhcCCCccccceeEEeeeecccc------cchhhhccccccceeeeeccchhhHhhhhhhhhhhccCC
Q 017085 64 NTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 137 (377)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 137 (377)
|+.........+.... ....|++++.|+..+.. ........++.+|.++++|....+.+.. ..+++..
T Consensus 95 ~~~~~~~~~~~~~~~~--~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~----~~~~~~~ 168 (398)
T cd03796 95 HQAFSALAHEALLHAR--TMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKENTVL----RASLDPE 168 (398)
T ss_pred CCCCchHHHHHHHHhh--hcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhhHHHH----HhCCChh
Confidence 9876443222222111 12257899999854211 1112223357889999999988765433 3456678
Q ss_pred CeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeE
Q 017085 138 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 217 (377)
Q Consensus 138 ~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~ 217 (377)
++.+||||+|.+.|.+.... .+++.++++++||+.++||++.+++++..+.+ +.++++
T Consensus 169 k~~vi~ngvd~~~f~~~~~~---------------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~-------~~~~~~ 226 (398)
T cd03796 169 RVSVIPNAVDSSDFTPDPSK---------------RDNDKITIVVISRLVYRKGIDLLVGIIPEICK-------KHPNVR 226 (398)
T ss_pred hEEEEcCccCHHHcCCCccc---------------CCCCceEEEEEeccchhcCHHHHHHHHHHHHh-------hCCCEE
Confidence 89999999998877543211 12567899999999999999999999987654 348999
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
|+|+|++ +..+.++++++++++.++|+|+|+. +++.++|+.||++++||. .|++|++++|||+||+|||+|
T Consensus 227 l~i~G~g-----~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~--~E~~g~~~~EAma~G~PVI~s 299 (398)
T cd03796 227 FIIGGDG-----PKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSL--TEAFCIAIVEAASCGLLVVST 299 (398)
T ss_pred EEEEeCC-----chHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCCh--hhccCHHHHHHHHcCCCEEEC
Confidence 9999998 4678899999999999999999986 789999999999999999 899999999999999999999
Q ss_pred CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Q 017085 296 AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 372 (377)
Q Consensus 296 ~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 372 (377)
+.|+.+|++.++ .+++++ .| .++++++|.+++++......++.++++.+.++|||+.+++++.++|+++++..
T Consensus 300 ~~gg~~e~i~~~-~~~~~~-~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~~~ 372 (398)
T cd03796 300 RVGGIPEVLPPD-MILLAE-PD--VESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQTP 372 (398)
T ss_pred CCCCchhheeCC-ceeecC-CC--HHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999765 444444 35 89999999999998776667888999999999999999999999999998654
No 5
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=6.1e-42 Score=311.78 Aligned_cols=337 Identities=20% Similarity=0.224 Sum_probs=255.2
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhh-hhcccCceEEE--------ccchhHHHhhhcccEEEEcCchhhhHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH-KMWDRGVQVIS--------AKGQETINTALKADLIVLNTAVAGKWL 72 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~Div~~~~~~~~~~~ 72 (377)
+|++.|.++||+|+|+|...+............ ........... ...+..++++.+||+||+|...+..+.
T Consensus 20 ~la~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~ 99 (371)
T cd04962 20 ELGKALARRGHEVHFITSSRPFRLDEYSPNIFFHEVEVPQYPLFQYPPYDLALASKIAEVAKRYKLDLLHVHYAVPHAVA 99 (371)
T ss_pred HHHHHHHhcCCceEEEecCCCcchhhhccCeEEEEecccccchhhcchhHHHHHHHHHHHHhcCCccEEeecccCCccHH
Confidence 689999999999999996543111000000000 00000000000 122334456789999999975533222
Q ss_pred HHHhhcCCCccccceeEEeeeeccc------ccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCC
Q 017085 73 DAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN 146 (377)
Q Consensus 73 ~~~~~~~~~~~~~~~v~~~h~~~~~------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi 146 (377)
..+..........|++++.|+.... .+.......++.+|.+++.|....+.+.+ .+ ....++.++|||+
T Consensus 100 ~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~----~~-~~~~~i~vi~n~~ 174 (371)
T cd04962 100 AYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLRQETYE----LF-DITKEIEVIPNFV 174 (371)
T ss_pred HHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHHHHHHHHH----hc-CCcCCEEEecCCc
Confidence 2222111111235888899975321 11222334457899999999998887764 22 2456899999999
Q ss_pred hhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCC
Q 017085 147 SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN 226 (377)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~ 226 (377)
+...+.+.. ....+++++++++.++++++||+.+.||++.+++++..+.+ + .+++++++|.+.
T Consensus 175 ~~~~~~~~~--------~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~-------~-~~~~l~i~G~g~- 237 (371)
T cd04962 175 DEDRFRPKP--------DEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRK-------E-VPARLLLVGDGP- 237 (371)
T ss_pred CHhhcCCCc--------hHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHHh-------c-CCceEEEEcCCc-
Confidence 987654322 23456778888889999999999999999999999987643 2 568999999983
Q ss_pred cccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec
Q 017085 227 AQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN 306 (377)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~ 306 (377)
..+.+++.++++++.++|+|.|+.+++.++|+.||++++||. .|++|++++|||++|+|||+|+.++..|++.+
T Consensus 238 ----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~--~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~ 311 (371)
T cd04962 238 ----ERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSE--KESFGLAALEAMACGVPVVASNAGGIPEVVKH 311 (371)
T ss_pred ----CHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCC--cCCCccHHHHHHHcCCCEEEeCCCCchhhhcC
Confidence 467788888999998999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017085 307 GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 368 (377)
Q Consensus 307 ~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 368 (377)
+.+|++++++| +++++++|.+++++++.+.+|++++++.+.++|+|+.+++++.++|+++
T Consensus 312 ~~~G~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 312 GETGFLVDVGD--VEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred CCceEEcCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999988 9999999999999999999999999999889999999999999999863
No 6
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=3.1e-42 Score=318.40 Aligned_cols=344 Identities=15% Similarity=0.146 Sum_probs=239.0
Q ss_pred cHhhHHHhcCc--eEEEEEecCCCcc--hhHhhhhhhhhcccCceEEEcc---------------------chhHHHhh-
Q 017085 2 ELAFLLRGVGT--KVNWITIQKPSEE--DEVIYSLEHKMWDRGVQVISAK---------------------GQETINTA- 55 (377)
Q Consensus 2 ~la~~L~~~G~--eV~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~- 55 (377)
+|+++|.++|| +|+|+|...+... .... ....-...|++++... .+..++++
T Consensus 34 ~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~--~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (439)
T TIGR02472 34 ELARALARRSEVEQVDLVTRLIKDAKVSPDYA--QPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELADNLLQHLRQQ 111 (439)
T ss_pred HHHHHHHhCCCCcEEEEEeccccCcCCCCccC--CCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHHHHHHHHHHc
Confidence 78999999997 9999995422110 0000 0001112455553321 11223333
Q ss_pred -hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccc-------------h---------hhhccccccce
Q 017085 56 -LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-------------L---------DYVKHLPLVAG 112 (377)
Q Consensus 56 -~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-------------~---------~~~~~~~~~~~ 112 (377)
.+||+||+|+..++.....+.. . ...|++.+.|+....... . .....+..+|.
T Consensus 112 ~~~~DvIH~h~~~~~~~~~~~~~-~---~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 187 (439)
T TIGR02472 112 GHLPDLIHAHYADAGYVGARLSR-L---LGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEETLAHASL 187 (439)
T ss_pred CCCCCEEEEcchhHHHHHHHHHH-H---hCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHHHHHhCCE
Confidence 2699999998654433332222 1 124789999975321100 0 01123467888
Q ss_pred eeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchh
Q 017085 113 AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ 192 (377)
Q Consensus 113 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~ 192 (377)
++++|..... +.+....+++++++.+||||+|.+.|.+......... ....++.++.+++.++|+++||+.+.||+
T Consensus 188 ii~~s~~~~~---~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~ 263 (439)
T TIGR02472 188 VITSTHQEIE---EQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSE-IDNLLAPFLKDPEKPPILAISRPDRRKNI 263 (439)
T ss_pred EEECCHHHHH---HHHHhccCCCccceEEECCCcChhhcCCCCccccchh-HHHHHHhhccccCCcEEEEEcCCcccCCH
Confidence 8887753221 1111123577889999999999988765322111111 11222345566677899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcc------cHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhc
Q 017085 193 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ------TKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 264 (377)
Q Consensus 193 ~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~------~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~a 264 (377)
+.+++|++.+.. +++ .+++. +++|+++... ..+.+++..++.++++.++|+|+|+. +++.++|+.|
T Consensus 264 ~~li~A~~~l~~-~~~----~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a 337 (439)
T TIGR02472 264 PSLVEAYGRSPK-LQE----MANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLA 337 (439)
T ss_pred HHHHHHHHhChh-hhh----hccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHH
Confidence 999999986421 211 13332 3567764321 01234566778889999999999974 7899999987
Q ss_pred ----CEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHH
Q 017085 265 ----DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTM 340 (377)
Q Consensus 265 ----dv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~ 340 (377)
|++++||. .|+||++++|||+||+|||+|+.||+.|++.++.+|++++++| +++|+++|.++++|++.+.++
T Consensus 338 ~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~ 413 (439)
T TIGR02472 338 ARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLD--LEAIASALEDALSDSSQWQLW 413 (439)
T ss_pred hhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCC--HHHHHHHHHHHHhCHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 341 GKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 341 ~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
++++++.+.++|||+.+++++.+++
T Consensus 414 ~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 414 SRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999876
No 7
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=7.2e-42 Score=314.90 Aligned_cols=338 Identities=14% Similarity=0.097 Sum_probs=252.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhh----hhhhhcccCceEEEccc--------h--------------hHHHh-
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYS----LEHKMWDRGVQVISAKG--------Q--------------ETINT- 54 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~--------------~~~~~- 54 (377)
+|+++|.++||+|+|+|.....+....... ........|+++...+. + ..+.+
T Consensus 23 ~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (412)
T PRK10307 23 EMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPSGLKRLLHLGSFALSSFFPLLAQ 102 (412)
T ss_pred HHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 689999999999999996532111100000 00011123555533211 0 01112
Q ss_pred -hhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc------cc---------hhhhccccccceeeeecc
Q 017085 55 -ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FK---------LDYVKHLPLVAGAMIDSH 118 (377)
Q Consensus 55 -~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~------~~---------~~~~~~~~~~~~~~~~s~ 118 (377)
..+||+||+|.+.............. ...|+++++|+.+... .. ......++.+|.+++.|.
T Consensus 103 ~~~~~Div~~~~p~~~~~~~~~~~~~~--~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~ 180 (412)
T PRK10307 103 RRWRPDRVIGVVPTLFCAPGARLLARL--SGARTWLHIQDYEVDAAFGLGLLKGGKVARLATAFERSLLRRFDNVSTISR 180 (412)
T ss_pred cCCCCCEEEEeCCcHHHHHHHHHHHHh--hCCCEEEEeccCCHHHHHHhCCccCcHHHHHHHHHHHHHHhhCCEEEecCH
Confidence 16899999997643211111111111 1246788888754211 10 112234568999999999
Q ss_pred chhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHH
Q 017085 119 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 198 (377)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a 198 (377)
...+.+. ..+.+..++.+||||+|.+.+.+... ..+..++++++++++.++++|+|++.+.||++.+++|
T Consensus 181 ~~~~~~~-----~~~~~~~~i~vi~ngvd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a 250 (412)
T PRK10307 181 SMMNKAR-----EKGVAAEKVIFFPNWSEVARFQPVAD-----ADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDA 250 (412)
T ss_pred HHHHHHH-----HcCCCcccEEEECCCcCHhhcCCCCc-----cchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHH
Confidence 9988875 34667788999999999887654321 1134578889998888999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCC
Q 017085 199 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 276 (377)
Q Consensus 199 ~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e 276 (377)
++.+. +.++++|+|+|+| +..+++++++++++++ +|+|+|++ +++.++|+.||++++||. .|
T Consensus 251 ~~~l~--------~~~~~~l~ivG~g-----~~~~~l~~~~~~~~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~--~e 314 (412)
T PRK10307 251 ARRLR--------DRPDLIFVICGQG-----GGKARLEKMAQCRGLP-NVHFLPLQPYDRLPALLKMADCHLLPQK--AG 314 (412)
T ss_pred HHHhc--------cCCCeEEEEECCC-----hhHHHHHHHHHHcCCC-ceEEeCCCCHHHHHHHHHhcCEeEEeec--cC
Confidence 98652 2378999999998 4678899999999986 79999986 689999999999999998 77
Q ss_pred c----cchHHHHHHHcCCcEEEeCCCC--cccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 017085 277 C----FGRITIEAMAFQLPVLGTAAGG--TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE 350 (377)
Q Consensus 277 ~----~~~~~~Ea~a~g~PvI~s~~~~--~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 350 (377)
+ +|.+++|||+||+|||+|+.+| ..+++. ++|++++++| +++++++|.++++|++.+.+|++++++.+.+
T Consensus 315 ~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~ 390 (412)
T PRK10307 315 AADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPES--VEALVAAIAALARQALLRPKLGTVAREYAER 390 (412)
T ss_pred cccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 7 6888999999999999999876 457775 5999999988 9999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHhc
Q 017085 351 IFQEHHMAERIAVVLKEVLKK 371 (377)
Q Consensus 351 ~f~~~~~~~~~~~~~~~~~~~ 371 (377)
+|||+.+++++.++|++++.+
T Consensus 391 ~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 391 TLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred HcCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998865
No 8
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=6.7e-42 Score=318.69 Aligned_cols=332 Identities=17% Similarity=0.155 Sum_probs=246.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcch-hHhhhhhhh---hccc-Cce--EEEccchhHHHhhhcccEEEEcCchhhhHHHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEED-EVIYSLEHK---MWDR-GVQ--VISAKGQETINTALKADLIVLNTAVAGKWLDA 74 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~-~~~~~~~~~---~~~~-~~~--~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~ 74 (377)
+|+++|.++||+|+++|...+.... ......... .... ... +........++++.+||+||+|++....+...
T Consensus 82 ~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~ 161 (465)
T PLN02871 82 NFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSPRIISEVARFKPDLIHASSPGIMVFGAL 161 (465)
T ss_pred HHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCHHHHHHHHhCCCCEEEECCCchhHHHHH
Confidence 6899999999999999976432111 000000000 0000 000 00111344566778999999998653333222
Q ss_pred HhhcCCCccccceeEEeeeecccccc--------h----hhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEE
Q 017085 75 VLKEDVPRVLPNVLWWIHEMRGHYFK--------L----DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV 142 (377)
Q Consensus 75 ~~~~~~~~~~~~~v~~~h~~~~~~~~--------~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi 142 (377)
.... ....|++.+.|+....+.. . ......+.+|.++++|....+.+.+ ....+.+++.++
T Consensus 162 ~~ak---~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~----~~~~~~~kv~vi 234 (465)
T PLN02871 162 FYAK---LLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSPALGKELEA----AGVTAANRIRVW 234 (465)
T ss_pred HHHH---HhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCHHHHHHHHH----cCCCCcCeEEEe
Confidence 2111 1124788888875432211 0 0122346789999999998887764 222356789999
Q ss_pred EcCChhhhHHHhhhhhhhhhhHHHHHHHhC-CCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEE
Q 017085 143 HLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 221 (377)
Q Consensus 143 ~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~ 221 (377)
|||+|.+.|.+... ....++++. .+++.++|+|+||+.+.||++.++++++.+ ++++|+|+
T Consensus 235 ~nGvd~~~f~p~~~-------~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~~~~-----------~~~~l~iv 296 (465)
T PLN02871 235 NKGVDSESFHPRFR-------SEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMERL-----------PGARLAFV 296 (465)
T ss_pred CCccCccccCCccc-------cHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHHHhC-----------CCcEEEEE
Confidence 99999987754321 123454443 335678899999999999999999988743 78999999
Q ss_pred ecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC
Q 017085 222 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 222 G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~ 299 (377)
|+| ++.+.++++++. .+|+|+|++ +++.++|+.||++|+||. .|++|++++|||+||+|||+++.+|
T Consensus 297 G~G-----~~~~~l~~~~~~----~~V~f~G~v~~~ev~~~~~~aDv~V~pS~--~E~~g~~vlEAmA~G~PVI~s~~gg 365 (465)
T PLN02871 297 GDG-----PYREELEKMFAG----TPTVFTGMLQGDELSQAYASGDVFVMPSE--SETLGFVVLEAMASGVPVVAARAGG 365 (465)
T ss_pred eCC-----hHHHHHHHHhcc----CCeEEeccCCHHHHHHHHHHCCEEEECCc--ccccCcHHHHHHHcCCCEEEcCCCC
Confidence 998 567778877764 379999997 789999999999999999 9999999999999999999999999
Q ss_pred cccceec---CcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHhcc
Q 017085 300 TTEIVVN---GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV-VLKEVLKKS 372 (377)
Q Consensus 300 ~~e~~~~---~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~ 372 (377)
+.|++.+ +.+|++++++| +++++++|.++++|++.+.+|++++++.+ ++|+|+.+++++.+ .|++++...
T Consensus 366 ~~eiv~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~-~~fsw~~~a~~l~~~~Y~~~~~~~ 439 (465)
T PLN02871 366 IPDIIPPDQEGKTGFLYTPGD--VDDCVEKLETLLADPELRERMGAAAREEV-EKWDWRAATRKLRNEQYSAAIWFW 439 (465)
T ss_pred cHhhhhcCCCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 89999999988 99999999999999999999999999987 57999999999998 799887643
No 9
>PLN02316 synthase/transferase
Probab=100.00 E-value=6.3e-41 Score=323.30 Aligned_cols=293 Identities=16% Similarity=0.153 Sum_probs=229.5
Q ss_pred hcccEEEEcCchhhhHHHHHhhc-C-CCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhh
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKE-D-VPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 133 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~-~-~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 133 (377)
.+|||||+|+-.++.....+... . .....+|+|.++|+.. +........+..+|.++++|...++.+.. ...
T Consensus 708 ~~PDIIHaHDW~talva~llk~~~~~~~~~~~p~V~TiHnl~--~~~n~lk~~l~~AD~ViTVS~tya~EI~~----~~~ 781 (1036)
T PLN02316 708 FHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKARVVFTIHNLE--FGANHIGKAMAYADKATTVSPTYSREVSG----NSA 781 (1036)
T ss_pred CCCCEEEECCChHHHHHHHHHHhhhhhccCCCCEEEEeCCcc--cchhHHHHHHHHCCEEEeCCHHHHHHHHh----ccC
Confidence 48999999975444333222211 0 0112358999999763 22222344567899999999998877654 222
Q ss_pred c--cCCCeEEEEcCChhhhHHHhhhh------------hhhhhhHHHHHHHhCCCC-CCeEEEEeccccccchhHHHHHH
Q 017085 134 I--KMPDTYVVHLGNSKELMEVAEDN------------VAKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHS 198 (377)
Q Consensus 134 ~--~~~~~~vi~ngi~~~~~~~~~~~------------~~~~~~~~~~r~~~~~~~-~~~~i~~~G~~~~~Kg~~~ll~a 198 (377)
+ ...++.+|+||||.+.|.+.... ..+...+..+++++|++. +.++|+++||+.++||++.|++|
T Consensus 782 l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~A 861 (1036)
T PLN02316 782 IAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHA 861 (1036)
T ss_pred cccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHH
Confidence 2 24789999999999877654221 112234667899999984 67899999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC--CCcEEEecCcCC-H-HHHHHhcCEEEecCCCC
Q 017085 199 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI--QDRVHFVNKTLT-V-APYLAAIDVLVQNSQAW 274 (377)
Q Consensus 199 ~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~--~~~v~~~g~~~~-~-~~~~~~adv~l~ps~~~ 274 (377)
+..+.+ .+++|+|+|+|+.. .+.+.++++++++++ +++|.|.+..++ + ..+|++||++|+||.
T Consensus 862 l~~ll~---------~~~qlVIvG~Gpd~--~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~-- 928 (1036)
T PLN02316 862 IWRTLE---------RNGQVVLLGSAPDP--RIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI-- 928 (1036)
T ss_pred HHHHhh---------cCcEEEEEeCCCCH--HHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc--
Confidence 998754 57999999998532 357888999998865 678999887644 3 379999999999999
Q ss_pred CCccchHHHHHHHcCCcEEEeCCCCcccceecC-------------cceeeecCCCCChhHHHHHHHHHhhC-HHHHHHH
Q 017085 275 GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG-------------TTGLLHPVGKEGITPLAKNIVKLATH-VERRLTM 340 (377)
Q Consensus 275 ~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~-------------~~g~~~~~~~~~~~~la~~i~~l~~~-~~~~~~~ 340 (377)
.|+||++++|||+||+|+|++++||+++.|.++ .+|+++++.+ +++|+.+|.+++++ ++....+
T Consensus 929 ~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d--~~aLa~AL~raL~~~~~~~~~~ 1006 (1036)
T PLN02316 929 FEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGAD--AAGVDYALNRAISAWYDGRDWF 1006 (1036)
T ss_pred ccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCC--HHHHHHHHHHHHhhhhhhHHHH
Confidence 999999999999999999999999999999874 5899999998 99999999999986 4555667
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017085 341 GKRGYERVKEIFQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 341 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 369 (377)
+..+++.+.+.|||+.++++|+++|+++.
T Consensus 1007 ~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 1007 NSLCKRVMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 88888888889999999999999999875
No 10
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=6.1e-41 Score=303.41 Aligned_cols=323 Identities=21% Similarity=0.266 Sum_probs=252.6
Q ss_pred CcHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc--------------cchhHHHhhhcccEEEEcCc
Q 017085 1 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--------------KGQETINTALKADLIVLNTA 66 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~Div~~~~~ 66 (377)
++|+++|.++||+|++++...... ..+...|++++.. .....++++.+||+||+|+.
T Consensus 17 ~~l~~~L~~~g~~v~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dii~~~~~ 87 (355)
T cd03819 17 LELARALVERGHRSLVASAGGRLV---------AELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDIVHARSR 87 (355)
T ss_pred HHHHHHHHHcCCEEEEEcCCCchH---------HHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCEEEECCC
Confidence 368999999999999998654211 1112223332211 12334456789999999986
Q ss_pred hhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCC
Q 017085 67 VAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN 146 (377)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi 146 (377)
.+.+....+.. ....|++++.|+...... .+...+..+|.+++.|....+.+.+ .++++.+++.++|||+
T Consensus 88 ~~~~~~~~~~~----~~~~~~i~~~h~~~~~~~--~~~~~~~~~~~vi~~s~~~~~~~~~----~~~~~~~k~~~i~ngi 157 (355)
T cd03819 88 APAWSAYLAAR----RTRPPFVTTVHGFYSVNF--RYNAIMARGDRVIAVSNFIADHIRE----NYGVDPDRIRVIPRGV 157 (355)
T ss_pred chhHHHHHHHH----hcCCCEEEEeCCchhhHH--HHHHHHHhcCEEEEeCHHHHHHHHH----hcCCChhhEEEecCCc
Confidence 54433222221 113688999998753321 3445567899999999998888764 6777888999999999
Q ss_pred hhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCC
Q 017085 147 SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN 226 (377)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~ 226 (377)
|...+.+.... ......+|++++.+++.++++++||+.+.||++.+++++..+.+ +.++++++|+|.+..
T Consensus 158 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~-------~~~~~~l~ivG~~~~ 227 (355)
T cd03819 158 DLDRFDPGAVP---PERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKK-------DDPDVHLLIVGDAQG 227 (355)
T ss_pred cccccCccccc---hHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHh-------cCCCeEEEEEECCcc
Confidence 98876543211 11123367888888889999999999999999999999997755 337899999999854
Q ss_pred cccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecC-CCCCCccchHHHHHHHcCCcEEEeCCCCccccee
Q 017085 227 AQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS-QAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV 305 (377)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps-~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~ 305 (377)
.. .+.+.+.+.++++++.++|.|+|+.+++.++|+.||++++|| . .|++|++++|||++|+|||+++.++..|++.
T Consensus 228 ~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~--~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~ 304 (355)
T cd03819 228 RR-FYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTE--PEAFGRTAVEAQAMGRPVIASDHGGARETVR 304 (355)
T ss_pred cc-hHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCC--CCCCchHHHHHHhcCCCEEEcCCCCcHHHHh
Confidence 33 356777788889999889999999999999999999999999 6 8999999999999999999999999999999
Q ss_pred cCcceeeecCCCCChhHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHH
Q 017085 306 NGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHM 357 (377)
Q Consensus 306 ~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~f~~~~~ 357 (377)
++.+|++++++| +++++++|..++. +++.+.+++++|++.+.++|+|+.+
T Consensus 305 ~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 305 PGETGLLVPPGD--AEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred CCCceEEeCCCC--HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 988999999888 9999999975554 8999999999999999999999864
No 11
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=8.8e-41 Score=310.57 Aligned_cols=294 Identities=16% Similarity=0.163 Sum_probs=224.5
Q ss_pred hcccEEEEcCchhhhHHHHHhhc-CCCccccceeEEeeeeccc-ccc----------------hh---------hhcccc
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKE-DVPRVLPNVLWWIHEMRGH-YFK----------------LD---------YVKHLP 108 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~h~~~~~-~~~----------------~~---------~~~~~~ 108 (377)
.+|||||+|...++.....+... ......+|++.|+|+.... .+. .. ....+.
T Consensus 117 ~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T PRK00654 117 PRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLY 196 (466)
T ss_pred CCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHH
Confidence 48999999986555433333221 1111136899999986421 010 00 011246
Q ss_pred ccceeeeeccchhhHhhhhh-----hhhhhccCCCeEEEEcCChhhhHHHhhhh-----------hhhhhhHHHHHHHhC
Q 017085 109 LVAGAMIDSHVTAEYWKNRT-----RERLRIKMPDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLG 172 (377)
Q Consensus 109 ~~~~~~~~s~~~~~~~~~~~-----~~~~~~~~~~~~vi~ngi~~~~~~~~~~~-----------~~~~~~~~~~r~~~~ 172 (377)
.+|.++++|...++.+.... ...++.+..++.+|+||+|.+.|.+.... ..+...+..+++++|
T Consensus 197 ~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~g 276 (466)
T PRK00654 197 YADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFG 276 (466)
T ss_pred hcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhC
Confidence 78999999999887765421 11233456789999999999987653221 012234567899999
Q ss_pred CCC-CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE-E
Q 017085 173 VRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-F 250 (377)
Q Consensus 173 ~~~-~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~-~ 250 (377)
+++ +.++|+++||+.++||++.+++|+.++.+ .+++|+|+|+|.+ .+.+.+++++++++. ++. +
T Consensus 277 l~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~---------~~~~lvivG~g~~---~~~~~l~~l~~~~~~--~v~~~ 342 (466)
T PRK00654 277 LPDDDAPLFAMVSRLTEQKGLDLVLEALPELLE---------QGGQLVLLGTGDP---ELEEAFRALAARYPG--KVGVQ 342 (466)
T ss_pred CCCCCCcEEEEeeccccccChHHHHHHHHHHHh---------cCCEEEEEecCcH---HHHHHHHHHHHHCCC--cEEEE
Confidence 985 67899999999999999999999998754 5799999998742 356788888888863 455 4
Q ss_pred ecCcCC-HHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecC------cceeeecCCCCChhHH
Q 017085 251 VNKTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG------TTGLLHPVGKEGITPL 323 (377)
Q Consensus 251 ~g~~~~-~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~------~~g~~~~~~~~~~~~l 323 (377)
.|+.++ +..+|++||++++||. +|+||++++|||+||+|+|++++||+.|++.++ .+|++++++| +++|
T Consensus 343 ~g~~~~~~~~~~~~aDv~v~PS~--~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d--~~~l 418 (466)
T PRK00654 343 IGYDEALAHRIYAGADMFLMPSR--FEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFN--AEDL 418 (466)
T ss_pred EeCCHHHHHHHHhhCCEEEeCCC--CCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCC--HHHH
Confidence 666544 5689999999999999 999999999999999999999999999999887 8999999988 9999
Q ss_pred HHHHHHHhh---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 017085 324 AKNIVKLAT---HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 370 (377)
Q Consensus 324 a~~i~~l~~---~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 370 (377)
+++|.++++ +++.+.+++.++.+ ++|||+.+++++.++|+++++
T Consensus 419 a~~i~~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 419 LRALRRALELYRQPPLWRALQRQAMA---QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhc---cCCChHHHHHHHHHHHHHHhh
Confidence 999999876 67777888877753 679999999999999999875
No 12
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.4e-40 Score=313.04 Aligned_cols=288 Identities=14% Similarity=0.134 Sum_probs=219.9
Q ss_pred hHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeE-Eeeeecccccchh----hh---ccccccc--eeeeeccc
Q 017085 50 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLW-WIHEMRGHYFKLD----YV---KHLPLVA--GAMIDSHV 119 (377)
Q Consensus 50 ~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~h~~~~~~~~~~----~~---~~~~~~~--~~~~~s~~ 119 (377)
..++++.+|||||+|...+..+...+.... ..|+++ +.|.......... +. ..+..++ .++++|..
T Consensus 393 ~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~----gvPvIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~ 468 (694)
T PRK15179 393 TDVMRSSVPSVVHIWQDGSIFACALAALLA----GVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQF 468 (694)
T ss_pred HHHHHHcCCcEEEEeCCcHHHHHHHHHHHc----CCCEEEEEeCCCccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHH
Confidence 455677899999999877654433332211 124444 5565422211111 11 1122233 34444555
Q ss_pred hhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHH--hCCCCCCeEEEEeccccccchhHHHHH
Q 017085 120 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRES--LGVRNEDLLFAIINSVSRGKGQDLFLH 197 (377)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~i~~~G~~~~~Kg~~~ll~ 197 (377)
..+.+.+ .++++.+++.|||||+|...|.+.+.. ...+.. ...+++.++|+++||+.+.||++.+++
T Consensus 469 ~~~~l~~----~~g~~~~kI~VI~NGVd~~~f~~~~~~-------~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~ 537 (694)
T PRK15179 469 AAHRYAD----WLGVDERRIPVVYNGLAPLKSVQDDAC-------TAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVE 537 (694)
T ss_pred HHHHHHH----HcCCChhHEEEECCCcCHHhcCCCchh-------hHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHH
Confidence 5444443 577888899999999998776432211 011111 223456789999999999999999999
Q ss_pred HHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCc
Q 017085 198 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 277 (377)
Q Consensus 198 a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~ 277 (377)
++.++.+ +.++++|+|+|+| +..+.++++++++++.++|+|+|+++++..+|+.||++++||. +|+
T Consensus 538 A~a~l~~-------~~p~~~LvIvG~G-----~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~--~Eg 603 (694)
T PRK15179 538 AAQRFAA-------SHPKVRFIMVGGG-----PLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSR--FEG 603 (694)
T ss_pred HHHHHHH-------HCcCeEEEEEccC-----cchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccc--ccc
Confidence 9998765 4488999999998 4678899999999999999999999999999999999999999 999
Q ss_pred cchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHH
Q 017085 278 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHM 357 (377)
Q Consensus 278 ~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~ 357 (377)
||++++|||+||+|||+|+.+|..|++.++.+|++++++|.+.++|+++|.+++.+......+++++++++.++|||+.+
T Consensus 604 fp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~ 683 (694)
T PRK15179 604 LPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQM 683 (694)
T ss_pred chHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999998774457999999998887666678889999999999999999
Q ss_pred HHHHHHHHH
Q 017085 358 AERIAVVLK 366 (377)
Q Consensus 358 ~~~~~~~~~ 366 (377)
++++.++|+
T Consensus 684 ~~~~~~lY~ 692 (694)
T PRK15179 684 IASTVRCYQ 692 (694)
T ss_pred HHHHHHHhC
Confidence 999999995
No 13
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=3.9e-40 Score=297.81 Aligned_cols=289 Identities=18% Similarity=0.223 Sum_probs=220.1
Q ss_pred chhHHHhhhcccEEEEcCchhhhHHHHHh-hcCCCccccceeEEeeeecccccch----hhh------ccccccceeeee
Q 017085 48 GQETINTALKADLIVLNTAVAGKWLDAVL-KEDVPRVLPNVLWWIHEMRGHYFKL----DYV------KHLPLVAGAMID 116 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~h~~~~~~~~~----~~~------~~~~~~~~~~~~ 116 (377)
.+..+++..+||+||+|...+..+...+. ..+. +.++.+.|......... .+. ......+ +++.
T Consensus 271 ~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagv----pviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~ 345 (578)
T PRK15490 271 HLVPHLCERKLDYLSVWQDGACLMIALAALIAGV----PRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-FMSN 345 (578)
T ss_pred HHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCC----CEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-hhhc
Confidence 34566688999999999866543322222 2222 23344556532211111 110 1122233 5556
Q ss_pred ccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHH--HhCCCCCCeEEEEeccccccchhHH
Q 017085 117 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE--SLGVRNEDLLFAIINSVSRGKGQDL 194 (377)
Q Consensus 117 s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~i~~~G~~~~~Kg~~~ 194 (377)
+..+++.+.+ .++++++++.+||||+|...|.+.... ....++ ..+++++.++++++||+.+.||+..
T Consensus 346 s~~v~~~l~~----~lgip~~KI~VIyNGVD~~rf~p~~~~------~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~ 415 (578)
T PRK15490 346 NHCVTRHYAD----WLKLEAKHFQVVYNGVLPPSTEPSSEV------PHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFA 415 (578)
T ss_pred cHHHHHHHHH----HhCCCHHHEEEEeCCcchhhcCccchh------hHHHHHHhhhccCCCCcEEEEEEEEehhcCHHH
Confidence 6655555544 667899999999999999876553211 112233 2345566788999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCC
Q 017085 195 FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAW 274 (377)
Q Consensus 195 ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~ 274 (377)
+++++.++.+ +.++++|+|+|+| +..++++++++++++.++|+|+|+.+++..+|+.+|++++||.
T Consensus 416 LI~A~a~llk-------~~pdirLvIVGdG-----~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~-- 481 (578)
T PRK15490 416 WIDFAARYLQ-------HHPATRFVLVGDG-----DLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSR-- 481 (578)
T ss_pred HHHHHHHHHh-------HCCCeEEEEEeCc-----hhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEccc--
Confidence 9999987654 3489999999998 5778999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHH---HHHhhCHHHHHHHHHHHHHHHHHh
Q 017085 275 GECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI---VKLATHVERRLTMGKRGYERVKEI 351 (377)
Q Consensus 275 ~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i---~~l~~~~~~~~~~~~~~~~~~~~~ 351 (377)
+||||++++|||++|+|||+|+.||.+|++.++.+|++++++| ++++++++ ..+.+..+....+++++++++.++
T Consensus 482 ~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LVp~~D--~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~ 559 (578)
T PRK15490 482 YEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFILDDAQ--TVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQER 559 (578)
T ss_pred ccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEECCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988 88888876 344555555667899999999999
Q ss_pred cCHHHHHHHHHHHHHH
Q 017085 352 FQEHHMAERIAVVLKE 367 (377)
Q Consensus 352 f~~~~~~~~~~~~~~~ 367 (377)
|||+.++++|.++|..
T Consensus 560 FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 560 FTVEHMVGTFVKTIAS 575 (578)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999975
No 14
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=1.4e-39 Score=295.07 Aligned_cols=275 Identities=19% Similarity=0.297 Sum_probs=220.7
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhcc
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 135 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 135 (377)
.++|+||+|+..... ..+....+ ..+++.+.|+... . ..+...+.++++|....+++.+. .+
T Consensus 98 ~~~~vi~v~~~~~~~---~~~~~~~~--~~~~v~~~h~~~~----~---~~~~~~~~ii~~S~~~~~~~~~~------~~ 159 (380)
T PRK15484 98 TKDSVIVIHNSMKLY---RQIRERAP--QAKLVMHMHNAFE----P---ELLDKNAKIIVPSQFLKKFYEER------LP 159 (380)
T ss_pred CCCcEEEEeCcHHhH---HHHHhhCC--CCCEEEEEecccC----h---hHhccCCEEEEcCHHHHHHHHhh------CC
Confidence 569999999854221 11122222 2478888886521 1 12346789999999888877642 35
Q ss_pred CCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCC
Q 017085 136 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 215 (377)
Q Consensus 136 ~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 215 (377)
..++.+||||+|...+.+.. +...++.++++++..+++|+||+.+.||++.+++|+..+.+ +.++
T Consensus 160 ~~~i~vIpngvd~~~~~~~~--------~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~-------~~p~ 224 (380)
T PRK15484 160 NADISIVPNGFCLETYQSNP--------QPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLAT-------AHSN 224 (380)
T ss_pred CCCEEEecCCCCHHHcCCcc--------hHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHH-------hCCC
Confidence 57899999999987765322 23467788888888999999999999999999999997754 4489
Q ss_pred eEEEEEecCCCc----ccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcC
Q 017085 216 VHAVIIGSDMNA----QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ 289 (377)
Q Consensus 216 ~~l~i~G~~~~~----~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g 289 (377)
++|+|+|++... ...+.+.+++.+++++ .+++|+|+. +++.++|+.||++++||. +.|+||++++|||+||
T Consensus 225 ~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~aDv~v~pS~-~~E~f~~~~lEAma~G 301 (380)
T PRK15484 225 LKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLADLVVVPSQ-VEEAFCMVAVEAMAAG 301 (380)
T ss_pred eEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhCCEEEeCCC-CccccccHHHHHHHcC
Confidence 999999987532 1235566777777765 579999986 689999999999999997 2499999999999999
Q ss_pred CcEEEeCCCCcccceecCccee-eecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017085 290 LPVLGTAAGGTTEIVVNGTTGL-LHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 368 (377)
Q Consensus 290 ~PvI~s~~~~~~e~~~~~~~g~-~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 368 (377)
+|||+|+.||++|++.++.+|+ ++++.| +++++++|.++++|++. .++++++++.+.++|+|+.++++++++|+..
T Consensus 302 ~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d--~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 302 KPVLASTKGGITEFVLEGITGYHLAEPMT--SDSIISDINRTLADPEL-TQIAEQAKDFVFSKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred CCEEEeCCCCcHhhcccCCceEEEeCCCC--HHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 556777 99999999999999985 7899999999999999999999999999876
Q ss_pred H
Q 017085 369 L 369 (377)
Q Consensus 369 ~ 369 (377)
.
T Consensus 379 ~ 379 (380)
T PRK15484 379 F 379 (380)
T ss_pred c
Confidence 4
No 15
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=5.4e-40 Score=298.49 Aligned_cols=334 Identities=19% Similarity=0.192 Sum_probs=239.6
Q ss_pred CcHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceE-EEccc-------hhHH----HhhhcccEEEEcCchh
Q 017085 1 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISAKG-------QETI----NTALKADLIVLNTAVA 68 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~----~~~~~~Div~~~~~~~ 68 (377)
+++++.|.+.||+|++++....+............+ .|..+ ++... .... ....+||+||+|++..
T Consensus 19 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~~h~~~~ 96 (372)
T cd03792 19 HSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL--QGADIELSEEEKEIYLEWNEENAERPLLDLDADVVVIHDPQP 96 (372)
T ss_pred HHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh--cCCCCCCCHHHHHHHHHHHHHHhccccccCCCCEEEECCCCc
Confidence 368999999999999999765432222111111111 12222 11110 0111 2256899999998764
Q ss_pred hhHHHHHhhcCCCccccceeEEeeeecccccch---hhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcC
Q 017085 69 GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL---DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 145 (377)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ng 145 (377)
..+ ..+.. . ...|++++.|......... .....+..+|.+++.+. ++.. .+++..++ ++|||
T Consensus 97 ~~~-~~~~~--~--~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~~---~~~~------~~~~~~~~-vipng 161 (372)
T cd03792 97 LAL-PLFKK--K--RGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHLP---EYVP------PQVPPRKV-IIPPS 161 (372)
T ss_pred hhH-HHhhh--c--CCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecHH---HhcC------CCCCCceE-EeCCC
Confidence 322 22111 1 1357888999764322211 12334467788887772 2221 12344455 99999
Q ss_pred ChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCC
Q 017085 146 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 225 (377)
Q Consensus 146 i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~ 225 (377)
+|......... .......++++++++++.++|+++||+.+.||++.+++++..+.+ ..++++|+++|+|+
T Consensus 162 vd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~-------~~~~~~l~i~G~g~ 231 (372)
T cd03792 162 IDPLSGKNREL---SPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKE-------RVPDPQLVLVGSGA 231 (372)
T ss_pred CCCCccccCCC---CHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHh-------hCCCCEEEEEeCCC
Confidence 99753111010 012245678889998899999999999999999999999997754 33789999999986
Q ss_pred CcccHHHHHHHHHHHhcCCCCcEEEecCc----CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcc
Q 017085 226 NAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 301 (377)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~v~~~g~~----~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~ 301 (377)
..++...+.+++..+..++.+++.|+|.. +++..+|+.||++++||. .||||++++|||+||+|||+|+.++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g~~~lEA~a~G~Pvv~s~~~~~~ 309 (372)
T cd03792 232 TDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFGLTVTEALWKGKPVIAGPVGGIP 309 (372)
T ss_pred CCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCCHHHHHHHHcCCCEEEcCCCCch
Confidence 53323344455555567778889999875 678999999999999999 999999999999999999999999999
Q ss_pred cceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017085 302 EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 367 (377)
Q Consensus 302 e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 367 (377)
+++.++.+|+++++ .++++++|.+++++++.+.+|++++++.+.++|+|+.+++++.++|++
T Consensus 310 ~~i~~~~~g~~~~~----~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 310 LQIEDGETGFLVDT----VEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred hhcccCCceEEeCC----cHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999874 678999999999999999999999999998999999999999999986
No 16
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.8e-39 Score=307.77 Aligned_cols=301 Identities=14% Similarity=0.113 Sum_probs=233.0
Q ss_pred hcccEEEEcCchhhhHHHHHhhc--CCCccccceeEEeeeecc-cccc----------------h-hh-----------h
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKE--DVPRVLPNVLWWIHEMRG-HYFK----------------L-DY-----------V 104 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~h~~~~-~~~~----------------~-~~-----------~ 104 (377)
.+|||||+|+-.++.....+... .......++++|+|+... ..+. . .+ .
T Consensus 609 ~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK 688 (977)
T PLN02939 609 KKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVK 688 (977)
T ss_pred CCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHH
Confidence 58999999987665432222211 001123589999998741 1110 0 00 0
Q ss_pred ccccccceeeeeccchhhHhhhhh----hhhhhccCCCeEEEEcCChhhhHHHhhhh-----------hhhhhhHHHHHH
Q 017085 105 KHLPLVAGAMIDSHVTAEYWKNRT----RERLRIKMPDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRE 169 (377)
Q Consensus 105 ~~~~~~~~~~~~s~~~~~~~~~~~----~~~~~~~~~~~~vi~ngi~~~~~~~~~~~-----------~~~~~~~~~~r~ 169 (377)
..+..+|.++++|...+..+.... ...++....++.+|+||||.+.|.+..++ ..+...+..+++
T Consensus 689 ~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRk 768 (977)
T PLN02939 689 GAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRK 768 (977)
T ss_pred HHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHH
Confidence 112367999999999988776521 12245567899999999999988765421 122334677899
Q ss_pred HhCCCC---CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCC
Q 017085 170 SLGVRN---EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD 246 (377)
Q Consensus 170 ~~~~~~---~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~ 246 (377)
++|++. +.++|+++||+.++||++.+++|+..+.+ ++++|+|+|+|+.. .+.+.++.++.++++.+
T Consensus 769 elGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~---------~dvqLVIvGdGp~~--~~e~eL~~La~~l~l~d 837 (977)
T PLN02939 769 QLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE---------LGGQFVLLGSSPVP--HIQREFEGIADQFQSNN 837 (977)
T ss_pred HhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh---------cCCEEEEEeCCCcH--HHHHHHHHHHHHcCCCC
Confidence 999984 46899999999999999999999987654 57899999998432 35678889999999989
Q ss_pred cEEEecCcCC--HHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec---------CcceeeecC
Q 017085 247 RVHFVNKTLT--VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN---------GTTGLLHPV 315 (377)
Q Consensus 247 ~v~~~g~~~~--~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~---------~~~g~~~~~ 315 (377)
+|.|+|..++ ...+|++||++|+||. +|+||++++|||+||+|+|++++||+.++|.+ +.+|+++++
T Consensus 838 rV~FlG~~de~lah~IYAaADIFLmPSr--~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~ 915 (977)
T PLN02939 838 NIRLILKYDEALSHSIYAASDMFIIPSM--FEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLT 915 (977)
T ss_pred eEEEEeccCHHHHHHHHHhCCEEEECCC--ccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecC
Confidence 9999998754 3589999999999999 99999999999999999999999999999865 479999999
Q ss_pred CCCChhHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Q 017085 316 GKEGITPLAKNIVKLAT----HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 374 (377)
Q Consensus 316 ~~~~~~~la~~i~~l~~----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 374 (377)
.| +++|+++|.++++ |++.+.+|+.++. .+.|||+.++++|.++|++++...+.
T Consensus 916 ~D--~eaLa~AL~rAL~~~~~dpe~~~~L~~~am---~~dFSWe~~A~qYeeLY~~ll~~~~~ 973 (977)
T PLN02939 916 PD--EQGLNSALERAFNYYKRKPEVWKQLVQKDM---NIDFSWDSSASQYEELYQRAVARARA 973 (977)
T ss_pred CC--HHHHHHHHHHHHHHhccCHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHhhhh
Confidence 88 9999999998875 7898999988664 46799999999999999999876543
No 17
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.2e-39 Score=298.34 Aligned_cols=283 Identities=21% Similarity=0.221 Sum_probs=227.3
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-------------cchhhhccccccceeeeeccchhh
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------------FKLDYVKHLPLVAGAMIDSHVTAE 122 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-------------~~~~~~~~~~~~~~~~~~s~~~~~ 122 (377)
.++|+||+|+..++.....+.. . ...|++++.|+..+.. +.......+..+|.+++.|....+
T Consensus 82 ~~~divh~~~~~~~~~~~~~~~--~--~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 157 (388)
T TIGR02149 82 VDADVVHSHTWYTFLAGHLAKK--L--YDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSGGMRE 157 (388)
T ss_pred CCCCeEeecchhhhhHHHHHHH--h--cCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccHHHHH
Confidence 4799999998655432222211 1 1357899999864311 011123345788999999999888
Q ss_pred Hhhhhhhhhh-hccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHH
Q 017085 123 YWKNRTRERL-RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 201 (377)
Q Consensus 123 ~~~~~~~~~~-~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~ 201 (377)
.+.+ .+ +++..++.++|||+|...+.+.. +...+++++++++.++++++||+.+.||++.++++++.
T Consensus 158 ~~~~----~~~~~~~~~i~vi~ng~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~ 225 (388)
T TIGR02149 158 DILK----YYPDLDPEKVHVIYNGIDTKEYKPDD--------GNVVLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHY 225 (388)
T ss_pred HHHH----HcCCCCcceEEEecCCCChhhcCCCc--------hHHHHHHhCCCCCceEEEEEcccccccCHHHHHHHHHH
Confidence 7765 33 56678899999999988765321 34567888998888999999999999999999999987
Q ss_pred HHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC-CCcEEEecC-c--CCHHHHHHhcCEEEecCCCCCCc
Q 017085 202 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNK-T--LTVAPYLAAIDVLVQNSQAWGEC 277 (377)
Q Consensus 202 l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~-~~~v~~~g~-~--~~~~~~~~~adv~l~ps~~~~e~ 277 (377)
+. ++++++++|++.... .+.+.+++.+..++. .+++++.+. . +++.++|+.||++++||. .|+
T Consensus 226 l~----------~~~~l~i~g~g~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~--~e~ 292 (388)
T TIGR02149 226 IP----------KDVQVVLCAGAPDTP-EVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSI--YEP 292 (388)
T ss_pred Hh----------hcCcEEEEeCCCCcH-HHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCc--cCC
Confidence 62 468899988764332 356777887777765 345777653 3 789999999999999999 899
Q ss_pred cchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCCh------hHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 017085 278 FGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGI------TPLAKNIVKLATHVERRLTMGKRGYERVKEI 351 (377)
Q Consensus 278 ~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~------~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 351 (377)
+|++++|||++|+|||+|+.++..|++.++.+|+++++++ . ++++++|.++++|++.+.+|+.++++.+.++
T Consensus 293 ~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~--~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~ 370 (388)
T TIGR02149 293 LGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDN--SDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEE 370 (388)
T ss_pred CChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCC--CcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887 7 8999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 017085 352 FQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 352 f~~~~~~~~~~~~~~~~~ 369 (377)
|||+.+++++.++|++++
T Consensus 371 ~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 371 FSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred CCHHHHHHHHHHHHHhhC
Confidence 999999999999999864
No 18
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=7.4e-40 Score=299.81 Aligned_cols=232 Identities=17% Similarity=0.211 Sum_probs=188.4
Q ss_pred cccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecc
Q 017085 106 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 185 (377)
Q Consensus 106 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~ 185 (377)
.+..+|.++++|....+.+.. .+ .+++.|||||+|.+.|.+.... ....+....++++.++++|+||
T Consensus 153 ~~~~ad~vi~~s~~~~~~~~~----~~---~~ki~vI~ngvd~~~f~~~~~~------~~~~~~~~~~~~~~~~i~~vgR 219 (396)
T cd03818 153 ALAQADAGVSPTRWQRSTFPA----EL---RSRISVIHDGIDTDRLRPDPQA------RLRLPNGRVLTPGDEVITFVAR 219 (396)
T ss_pred HHHhCCEEECCCHHHHhhCcH----hh---ccceEEeCCCccccccCCCchh------hhcccccccCCCCCeEEEEECC
Confidence 457899999999998887654 22 2689999999999887653321 1112233345567789999998
Q ss_pred -ccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc-------ccHHHHHHHHHHH-hcCCCCcEEEecCc--
Q 017085 186 -VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-------QTKFESELRNYVM-QKKIQDRVHFVNKT-- 254 (377)
Q Consensus 186 -~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~-------~~~~~~~l~~~~~-~~~~~~~v~~~g~~-- 254 (377)
+.+.||++.+++|+..+.+ +.++++|+|+|++.+. .+.+.+.+.+... .++ .++|+|+|++
T Consensus 220 ~l~~~Kg~~~ll~a~~~l~~-------~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~V~f~G~v~~ 291 (396)
T cd03818 220 NLEPYRGFHVFMRALPRLLR-------ARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLD-LSRVHFLGRVPY 291 (396)
T ss_pred CcccccCHHHHHHHHHHHHH-------HCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccC-cceEEEeCCCCH
Confidence 9999999999999997765 3489999999975321 0012223222222 122 4789999987
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
+++.++|+.||++++||. .|++|++++||||||+|||+|+.++..|++.++.+|++++++| +++++++|.++++|+
T Consensus 292 ~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d--~~~la~~i~~ll~~~ 367 (396)
T cd03818 292 DQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFD--PDALAAAVIELLDDP 367 (396)
T ss_pred HHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCC--HHHHHHHHHHHHhCH
Confidence 689999999999999999 9999999999999999999999999999999999999999988 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017085 335 ERRLTMGKRGYERVKEIFQEHHMAERIA 362 (377)
Q Consensus 335 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 362 (377)
+.+.+|++++++.+.++|||+.++++|.
T Consensus 368 ~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 368 ARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999999999999999999999885
No 19
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1.8e-39 Score=312.33 Aligned_cols=300 Identities=14% Similarity=0.126 Sum_probs=226.0
Q ss_pred cccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccccc------------------c--hh---hhcccccccee
Q 017085 57 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------------------K--LD---YVKHLPLVAGA 113 (377)
Q Consensus 57 ~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~------------------~--~~---~~~~~~~~~~~ 113 (377)
.||+||.|...++.....+... . ..|++.|.|....... . .. -...+..++.+
T Consensus 310 ~pDvIHaHyw~sG~aa~~L~~~-l---gVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~V 385 (1050)
T TIGR02468 310 WPYVIHGHYADAGDSAALLSGA-L---NVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIV 385 (1050)
T ss_pred CCCEEEECcchHHHHHHHHHHh-h---CCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEE
Confidence 4999999976655433333221 1 2589999996421110 0 01 12335688999
Q ss_pred eeeccchhhHhhhhhh------------------hhhhccCCCeEEEEcCChhhhHHHhhhhhhhh-------------h
Q 017085 114 MIDSHVTAEYWKNRTR------------------ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKR-------------V 162 (377)
Q Consensus 114 ~~~s~~~~~~~~~~~~------------------~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~-------------~ 162 (377)
++.|....+.....+. .-+|...+++.|||||+|++.|.+........ .
T Consensus 386 IasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~ 465 (1050)
T TIGR02468 386 ITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPP 465 (1050)
T ss_pred EEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccch
Confidence 9999887764332110 01223345999999999999988643211100 0
Q ss_pred hHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc------ccHHHHHHH
Q 017085 163 LREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA------QTKFESELR 236 (377)
Q Consensus 163 ~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~------~~~~~~~l~ 236 (377)
....++ .+..+++.++|+++||+.++||++.||+|+..+.+. + ..+++. +|+|+++.. ..++..+++
T Consensus 466 ~~~~l~-r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l-~----~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~ 538 (1050)
T TIGR02468 466 IWSEIM-RFFTNPRKPMILALARPDPKKNITTLVKAFGECRPL-R----ELANLT-LIMGNRDDIDEMSSGSSSVLTSVL 538 (1050)
T ss_pred hhHHHH-hhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhh-c----cCCCEE-EEEecCchhhhhhccchHHHHHHH
Confidence 011233 344567788999999999999999999999987532 1 124665 466765321 113456788
Q ss_pred HHHHhcCCCCcEEEecCc--CCHHHHHHhc----CEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcce
Q 017085 237 NYVMQKKIQDRVHFVNKT--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTG 310 (377)
Q Consensus 237 ~~~~~~~~~~~v~~~g~~--~~~~~~~~~a----dv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g 310 (377)
++++++++.++|.|+|+. +++.++|+.| |+||+||. .|+||++++||||||+|||+|+.||..|++.++.+|
T Consensus 539 ~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nG 616 (1050)
T TIGR02468 539 KLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNG 616 (1050)
T ss_pred HHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcE
Confidence 999999999999999975 7899999988 69999999 999999999999999999999999999999999999
Q ss_pred eeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Q 017085 311 LLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 372 (377)
Q Consensus 311 ~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 372 (377)
+++++.| +++|+++|.++++|++.+.+|+.++++.+. +|+|+.+++++.+.+..+..+.
T Consensus 617 lLVdP~D--~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~-~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 617 LLVDPHD--QQAIADALLKLVADKQLWAECRQNGLKNIH-LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred EEECCCC--HHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHhccC
Confidence 9999998 999999999999999999999999999885 6999999999999999887554
No 20
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=4.3e-39 Score=291.79 Aligned_cols=329 Identities=22% Similarity=0.281 Sum_probs=245.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEE--------ccchhHHHhhhcccEEEEcCchhhhHHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--------AKGQETINTALKADLIVLNTAVAGKWLD 73 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~Div~~~~~~~~~~~~ 73 (377)
+|+++|.+.||+|++++............... . ..+.... ......++++.+||+||+|...+..+..
T Consensus 20 ~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~pdiv~~~~~~~~~~~~ 95 (360)
T cd04951 20 DLADQFVAKGHQVAIISLTGESEVKPPIDATI--I--LNLNMSKNPLSFLLALWKLRKILRQFKPDVVHAHMFHANIFAR 95 (360)
T ss_pred HHHHhcccCCceEEEEEEeCCCCccchhhccc--e--EEecccccchhhHHHHHHHHHHHHhcCCCEEEEcccchHHHHH
Confidence 68999999999999999654432111110000 0 0000000 0123345567899999999865543332
Q ss_pred HHhhcCCCccccceeEEeeeeccccc--chhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhH
Q 017085 74 AVLKEDVPRVLPNVLWWIHEMRGHYF--KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELM 151 (377)
Q Consensus 74 ~~~~~~~~~~~~~~v~~~h~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~ 151 (377)
.+... ...++++.+.|+...... ...+.......+.+++.|....+++.+ ..+++.+++.++|||+|...+
T Consensus 96 l~~~~---~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~----~~~~~~~~~~~i~ng~~~~~~ 168 (360)
T cd04951 96 LLRLF---LPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYFIA----SKAFNANKSFVVYNGIDTDRF 168 (360)
T ss_pred HHHhh---CCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHHHHh----ccCCCcccEEEEccccchhhc
Confidence 22221 123578888887643211 111111223456666777776666654 444677899999999998766
Q ss_pred HHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHH
Q 017085 152 EVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF 231 (377)
Q Consensus 152 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~ 231 (377)
..... .+...++++++++++++++++|++.+.||++.+++++.++.+ +.++++|+|+|+| +.
T Consensus 169 ~~~~~------~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~-------~~~~~~l~i~G~g-----~~ 230 (360)
T cd04951 169 RKDPA------RRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLS-------DYLDIKLLIAGDG-----PL 230 (360)
T ss_pred CcchH------HHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHh-------hCCCeEEEEEcCC-----Cc
Confidence 43321 145578889998889999999999999999999999997755 3478999999998 45
Q ss_pred HHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCccee
Q 017085 232 ESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL 311 (377)
Q Consensus 232 ~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~ 311 (377)
.+++++.++++++.++|.|+|+.+++.++|+.||++++||. .|++|++++|||++|+|||+++.++..|++.+ +|+
T Consensus 231 ~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~--~g~ 306 (360)
T cd04951 231 RATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSA--WEGFGLVVAEAMACELPVVATDAGGVREVVGD--SGL 306 (360)
T ss_pred HHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEeccc--ccCCChHHHHHHHcCCCEEEecCCChhhEecC--Cce
Confidence 67888889999998999999999999999999999999999 89999999999999999999999999999965 889
Q ss_pred eecCCCCChhHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 312 LHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 312 ~~~~~~~~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
+++++| +++++++|.++++ +++.+..++.+ ++.+.++|||+.+++++.++|+
T Consensus 307 ~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 307 IVPISD--PEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred EeCCCC--HHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhh
Confidence 999887 9999999999995 66666666655 8888899999999999999996
No 21
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=2e-39 Score=302.96 Aligned_cols=291 Identities=18% Similarity=0.172 Sum_probs=223.3
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccc-ccch---------------h----------hhccccc
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-YFKL---------------D----------YVKHLPL 109 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~-~~~~---------------~----------~~~~~~~ 109 (377)
.+|||||+|...++.....+.. ......+|+++++|+.... .+.. . ....+..
T Consensus 127 ~~~DiiH~hdw~~~~~~~~l~~-~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 205 (473)
T TIGR02095 127 WQPDVVHAHDWHTALVPALLKA-VYRPNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVY 205 (473)
T ss_pred CCCCEEEECCcHHHHHHHHHHh-hccCCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHh
Confidence 5899999998655533332222 1111025899999986421 1110 0 1123468
Q ss_pred cceeeeeccchhhHhhhhh-----hhhhhccCCCeEEEEcCChhhhHHHhhhhh-----------hhhhhHHHHHHHhCC
Q 017085 110 VAGAMIDSHVTAEYWKNRT-----RERLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGV 173 (377)
Q Consensus 110 ~~~~~~~s~~~~~~~~~~~-----~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~-----------~~~~~~~~~r~~~~~ 173 (377)
+|.++++|...++.+.... ...+..+..++.+|+||+|.+.|.+..... .+...+..+++++|+
T Consensus 206 ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl 285 (473)
T TIGR02095 206 ADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGL 285 (473)
T ss_pred CCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCC
Confidence 8999999998877665420 001122457899999999999876532210 122346678999999
Q ss_pred CC--CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEe
Q 017085 174 RN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV 251 (377)
Q Consensus 174 ~~--~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~ 251 (377)
+. +.++|+++||+.++||++.+++++.++.+ .+++|+|+|.|.+ ++.+++++++.+++ .++.+.
T Consensus 286 ~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~---------~~~~lvi~G~g~~---~~~~~l~~~~~~~~--~~v~~~ 351 (473)
T TIGR02095 286 PVDDDVPLFGVISRLTQQKGVDLLLAALPELLE---------LGGQLVVLGTGDP---ELEEALRELAERYP--GNVRVI 351 (473)
T ss_pred CccCCCCEEEEEecCccccChHHHHHHHHHHHH---------cCcEEEEECCCCH---HHHHHHHHHHHHCC--CcEEEE
Confidence 86 77999999999999999999999997754 4699999999852 46678888887764 567777
Q ss_pred cCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecC------cceeeecCCCCChhHH
Q 017085 252 NKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG------TTGLLHPVGKEGITPL 323 (377)
Q Consensus 252 g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~------~~g~~~~~~~~~~~~l 323 (377)
+.. +++..+|++||++++||. .|+||++++|||+||+|||+++.||+.|++.++ .+|+++++.| ++++
T Consensus 352 ~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d--~~~l 427 (473)
T TIGR02095 352 IGYDEALAHLIYAGADFILMPSR--FEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYD--PGAL 427 (473)
T ss_pred EcCCHHHHHHHHHhCCEEEeCCC--cCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCC--HHHH
Confidence 654 446789999999999999 999999999999999999999999999999987 8999999988 9999
Q ss_pred HHHHHHHhh----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017085 324 AKNIVKLAT----HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 368 (377)
Q Consensus 324 a~~i~~l~~----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 368 (377)
+++|.++++ +++.+.++++++.+ ++|||+++++++.++|+++
T Consensus 428 a~~i~~~l~~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 428 LAALSRALRLYRQDPSLWEALQKNAMS---QDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHhC
Confidence 999999888 89989999888753 6799999999999999863
No 22
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3.8e-39 Score=298.52 Aligned_cols=295 Identities=18% Similarity=0.207 Sum_probs=227.6
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccc-ccch-------------------------hhhccccc
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-YFKL-------------------------DYVKHLPL 109 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~-~~~~-------------------------~~~~~~~~ 109 (377)
.+|||||+|+..++.....+ .... ....|.|.|+|+.... .+.. ..+..+..
T Consensus 132 ~~pDIiH~Hdw~~~l~~~~l-~~~~-~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ 209 (485)
T PRK14099 132 FVPDIVHAHDWQAGLAPAYL-HYSG-RPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQL 209 (485)
T ss_pred CCCCEEEECCcHHHHHHHHH-HhCC-CCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHh
Confidence 58999999985555433322 2111 1235899999986321 0100 01233468
Q ss_pred cceeeeeccchhhHhhhhh-----hhhhhccCCCeEEEEcCChhhhHHHhhhhh-----------hhhhhHHHHHHHhCC
Q 017085 110 VAGAMIDSHVTAEYWKNRT-----RERLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGV 173 (377)
Q Consensus 110 ~~~~~~~s~~~~~~~~~~~-----~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~-----------~~~~~~~~~r~~~~~ 173 (377)
+|.++++|...++.+.+.. ...++.+..++.+|+||+|.+.|.+..... .+...+..+++++|+
T Consensus 210 ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl 289 (485)
T PRK14099 210 ADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGL 289 (485)
T ss_pred cCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCC
Confidence 8999999999988776421 001223467899999999999887643211 122335678899999
Q ss_pred CC--CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcE-EE
Q 017085 174 RN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV-HF 250 (377)
Q Consensus 174 ~~--~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v-~~ 250 (377)
+. +.++|+++||+.++||++.+++|+..+.+ .+++|+|+|+|.+ ++.+.+++++++++ +++ .+
T Consensus 290 ~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~~--~~v~~~ 355 (485)
T PRK14099 290 DPDPDALLLGVISRLSWQKGLDLLLEALPTLLG---------EGAQLALLGSGDA---ELEARFRAAAQAYP--GQIGVV 355 (485)
T ss_pred CcccCCcEEEEEecCCccccHHHHHHHHHHHHh---------cCcEEEEEecCCH---HHHHHHHHHHHHCC--CCEEEE
Confidence 74 46889999999999999999999997754 5799999999842 35677888887765 345 78
Q ss_pred ecCcCCHHHHH-HhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecC---------cceeeecCCCCCh
Q 017085 251 VNKTLTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGLLHPVGKEGI 320 (377)
Q Consensus 251 ~g~~~~~~~~~-~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~---------~~g~~~~~~~~~~ 320 (377)
+|+.+++..+| +.||++++||. .|+||++++|||+||+|+|++++||++|++.++ .+|+++++.| +
T Consensus 356 ~G~~~~l~~~~~a~aDifv~PS~--~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d--~ 431 (485)
T PRK14099 356 IGYDEALAHLIQAGADALLVPSR--FEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVT--A 431 (485)
T ss_pred eCCCHHHHHHHHhcCCEEEECCc--cCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCC--H
Confidence 99988898887 56999999999 999999999999999999999999999998775 5899999998 9
Q ss_pred hHHHHHHHH---HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 017085 321 TPLAKNIVK---LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 373 (377)
Q Consensus 321 ~~la~~i~~---l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 373 (377)
++|+++|.+ +++|++.+.++++++++ ++|||++++++++++|++++...+
T Consensus 432 ~~La~ai~~a~~l~~d~~~~~~l~~~~~~---~~fSw~~~a~~y~~lY~~l~~~~~ 484 (485)
T PRK14099 432 DALAAALRKTAALFADPVAWRRLQRNGMT---TDVSWRNPAQHYAALYRSLVAERR 484 (485)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhh---hcCChHHHHHHHHHHHHHHHhhhC
Confidence 999999997 67799999999998863 679999999999999999986543
No 23
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=2.7e-39 Score=293.94 Aligned_cols=275 Identities=21% Similarity=0.257 Sum_probs=225.1
Q ss_pred hHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccccc------------chhhhccccccceeeeec
Q 017085 50 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------------KLDYVKHLPLVAGAMIDS 117 (377)
Q Consensus 50 ~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~------------~~~~~~~~~~~~~~~~~s 117 (377)
..++++.+||+||+|....+.....+.+. ...|++++.|+...... .......++.+|.+++.|
T Consensus 75 ~~~~~~~~~dvvh~~~~~~~~~~~~~~~~----~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 150 (367)
T cd05844 75 RRLLRRHRPDLVHAHFGFDGVYALPLARR----LGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVS 150 (367)
T ss_pred HHHHHhhCCCEEEeccCchHHHHHHHHHH----cCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECC
Confidence 34567789999999976654444333221 23588898996432111 112234457889999999
Q ss_pred cchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHH
Q 017085 118 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 197 (377)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~ 197 (377)
....+.+.+ .|++.+++.++|||+|.+.+.+... ..+.+.++++|++.+.||++.+++
T Consensus 151 ~~~~~~~~~-----~~~~~~~i~vi~~g~d~~~~~~~~~-----------------~~~~~~i~~~G~~~~~K~~~~li~ 208 (367)
T cd05844 151 QFIRDRLLA-----LGFPPEKVHVHPIGVDTAKFTPATP-----------------ARRPPRILFVGRFVEKKGPLLLLE 208 (367)
T ss_pred HHHHHHHHH-----cCCCHHHeEEecCCCCHHhcCCCCC-----------------CCCCcEEEEEEeeccccChHHHHH
Confidence 998887763 4677788999999999876643211 145678999999999999999999
Q ss_pred HHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCC--
Q 017085 198 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA-- 273 (377)
Q Consensus 198 a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~-- 273 (377)
++..+.+ +.++++|+++|++ ++.+++++.++++++.++|+|+|++ +++.++|+.||++++||..
T Consensus 209 a~~~l~~-------~~~~~~l~ivG~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~ 276 (367)
T cd05844 209 AFARLAR-------RVPEVRLVIIGDG-----PLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAP 276 (367)
T ss_pred HHHHHHH-------hCCCeEEEEEeCc-----hHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCC
Confidence 9997765 3478999999987 5678899999999999999999987 6799999999999999962
Q ss_pred --CCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 017085 274 --WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 351 (377)
Q Consensus 274 --~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 351 (377)
..||+|++++|||++|+|||+|+.++..|++.++.+|+++++.| +++++++|.+++++++.+.+++.++++.+.++
T Consensus 277 ~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~ 354 (367)
T cd05844 277 SGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGD--VAALAAALGRLLADPDLRARMGAAGRRRVEER 354 (367)
T ss_pred CCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 14899999999999999999999999999999999999999887 99999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 017085 352 FQEHHMAERIAVV 364 (377)
Q Consensus 352 f~~~~~~~~~~~~ 364 (377)
|||+.+++++.++
T Consensus 355 ~s~~~~~~~l~~i 367 (367)
T cd05844 355 FDLRRQTAKLEAL 367 (367)
T ss_pred CCHHHHHHHHhcC
Confidence 9999999998753
No 24
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=2.2e-38 Score=286.92 Aligned_cols=326 Identities=23% Similarity=0.286 Sum_probs=253.4
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc------------cchhHHHhhhcccEEEEcCchhh
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------------KGQETINTALKADLIVLNTAVAG 69 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Div~~~~~~~~ 69 (377)
+|+++|.+.||+|.+++........ ..+...++.++.. .....+++..+||+||++.....
T Consensus 20 ~l~~~l~~~~~~v~~~~~~~~~~~~-------~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~div~~~~~~~~ 92 (365)
T cd03807 20 RLLKGLDRDRFEHVVISLTDRGELG-------EELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLRPDVVHTWMYHAD 92 (365)
T ss_pred HHHHHhhhccceEEEEecCcchhhh-------HHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhCCCEEEecccccc
Confidence 6899999999999999965433211 1222234444221 12344556789999999875544
Q ss_pred hHHHHHhhcCCCccccceeEEeeeecccc---cc----hhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEE
Q 017085 70 KWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FK----LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV 142 (377)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~v~~~h~~~~~~---~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi 142 (377)
.+........ ..++++++.|+..... .. .......+..+.+++.|....+.+.. ++++..++.++
T Consensus 93 ~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~-----~~~~~~~~~vi 164 (365)
T cd03807 93 LYGGLAARLA---GVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQA-----IGYPPKKIVVI 164 (365)
T ss_pred HHHHHHHHhc---CCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHH-----cCCChhheeEe
Confidence 3332222211 2358899999875441 11 11223345677788888888777763 36777899999
Q ss_pred EcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEe
Q 017085 143 HLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG 222 (377)
Q Consensus 143 ~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G 222 (377)
|||+|...+..... .+...+++++++++.++++++|++.+.||++.+++++..+.+ +.++++|+++|
T Consensus 165 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~-------~~~~~~l~i~G 231 (365)
T cd03807 165 PNGVDTERFSPDLD------ARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLK-------KFPNARLLLVG 231 (365)
T ss_pred CCCcCHHhcCCccc------chHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHH-------hCCCeEEEEec
Confidence 99999876654322 134567889998889999999999999999999999997755 34789999999
Q ss_pred cCCCcccHHHHHHHHHHH-hcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcc
Q 017085 223 SDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 301 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~ 301 (377)
.+. ....++.... +.++.+++.+.|..+++.++|+.||++++||. .|++|++++|||++|+|||+++.++..
T Consensus 232 ~~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~g~PvI~~~~~~~~ 304 (365)
T cd03807 232 DGP-----DRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSL--SEGFPNVLLEAMACGLPVVATDVGDNA 304 (365)
T ss_pred CCc-----chhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCc--cccCCcHHHHHHhcCCCEEEcCCCChH
Confidence 974 3344455554 78888999999998999999999999999999 899999999999999999999999999
Q ss_pred cceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 302 EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 302 e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
+++.+ +|++++++| +++++++|.+++++++.+.++++++++.+.++|||+.+++++.++|+
T Consensus 305 e~~~~--~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 305 ELVGD--TGFLVPPGD--PEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred HHhhc--CCEEeCCCC--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 99976 899999888 99999999999999999999999999999999999999999999984
No 25
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=2.8e-38 Score=290.41 Aligned_cols=329 Identities=23% Similarity=0.229 Sum_probs=248.2
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc---------------------chhHHHhhh--cc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---------------------GQETINTAL--KA 58 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~--~~ 58 (377)
+|+++|+++||+|+|++.......... .....++.+.... .....++.. +|
T Consensus 29 ~l~~~L~~~g~~V~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (398)
T cd03800 29 ELARALARLGHEVDIFTRRIDDALPPI------VELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRREGGRP 102 (398)
T ss_pred HHHHHHhccCceEEEEEecCCcccCCc------cccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhcCCCc
Confidence 689999999999999996544322110 0011222222110 112223444 99
Q ss_pred cEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccc--------------hhhhccccccceeeeeccchhhHh
Q 017085 59 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK--------------LDYVKHLPLVAGAMIDSHVTAEYW 124 (377)
Q Consensus 59 Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~--------------~~~~~~~~~~~~~~~~s~~~~~~~ 124 (377)
|+||+|....+.....+... ...|++.+.|+....... ......+..+|.+++.|....+.+
T Consensus 103 Div~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 178 (398)
T cd03800 103 DLIHAHYWDSGLVALLLARR----LGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEAEEL 178 (398)
T ss_pred cEEEEecCccchHHHHHHhh----cCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHHHHH
Confidence 99999976544333322211 124788888876421111 011234568899999999888777
Q ss_pred hhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHH
Q 017085 125 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLE 204 (377)
Q Consensus 125 ~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~ 204 (377)
.+ .++.+..++.+||||+|.+.+.+.... ...++.++.+.++++|+++||+.+.||++.+++++..+.+
T Consensus 179 ~~----~~~~~~~~~~vi~ng~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~ 247 (398)
T cd03800 179 YS----LYGAYPRRIRVVPPGVDLERFTPYGRA-------EARRARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELPE 247 (398)
T ss_pred HH----HccccccccEEECCCCCccceecccch-------hhHHHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHHH
Confidence 65 344455679999999998876543221 1225556677788999999999999999999999997754
Q ss_pred HHhhhcccCCCeEEEEEecCCCccc-HHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchH
Q 017085 205 LIKEKKLEVPSVHAVIIGSDMNAQT-KFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRI 281 (377)
Q Consensus 205 ~l~~~~~~~~~~~l~i~G~~~~~~~-~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~ 281 (377)
+.++++|+++|++..... .....++++++++++.+++.|+|++ +++.++|+.||++++||. .|++|++
T Consensus 248 -------~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~--~e~~~~~ 318 (398)
T cd03800 248 -------LRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPAL--YEPFGLT 318 (398)
T ss_pred -------hCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEeccc--ccccCcH
Confidence 337899999998754321 2345578888889998999999996 679999999999999999 8999999
Q ss_pred HHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017085 282 TIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 361 (377)
Q Consensus 282 ~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 361 (377)
++|||++|+|||+++.++..+++.++++|+++++.| +++++++|.+++++++.+.+++.++++.+.++|||+.+++++
T Consensus 319 l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 396 (398)
T cd03800 319 ALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRD--PEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARL 396 (398)
T ss_pred HHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999999888 999999999999999999999999999998999999999987
Q ss_pred H
Q 017085 362 A 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 397 ~ 397 (398)
T cd03800 397 L 397 (398)
T ss_pred h
Confidence 6
No 26
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.2e-39 Score=301.92 Aligned_cols=276 Identities=22% Similarity=0.249 Sum_probs=226.7
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccc--------------ccchhh--------hcccccccee
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH--------------YFKLDY--------VKHLPLVAGA 113 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~--------------~~~~~~--------~~~~~~~~~~ 113 (377)
.++|+||+|+...+.++..+.... ...|++++.|+.... .++..+ ...++.+|.+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~---~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~I 248 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR---RGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRI 248 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH---hCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 578999999754333333322211 235899999985321 011111 2234688999
Q ss_pred eeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhH
Q 017085 114 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 193 (377)
Q Consensus 114 ~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~ 193 (377)
++.|....+... .+|.+++++.+||||+|.+.+.+.... ..+++.++|+++||+.+.||++
T Consensus 249 i~~s~~~~~~~~-----~~g~~~~ki~vIpNgid~~~f~~~~~~--------------~~~~~~~~i~~vGrl~~~Kg~~ 309 (475)
T cd03813 249 TTLYEGNRERQI-----EDGADPEKIRVIPNGIDPERFAPARRA--------------RPEKEPPVVGLIGRVVPIKDIK 309 (475)
T ss_pred EecCHHHHHHHH-----HcCCCHHHeEEeCCCcCHHHcCCcccc--------------ccCCCCcEEEEEeccccccCHH
Confidence 999998776544 567788899999999999877543210 1235678999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCC
Q 017085 194 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 273 (377)
Q Consensus 194 ~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~ 273 (377)
.+++|++.+.+ +.++++++|+|+++.. +.+.++++++++++++.++|+|+| .+++.++|+.+|++++||.
T Consensus 310 ~li~a~~~l~~-------~~p~~~l~IvG~g~~~-~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~- 379 (475)
T cd03813 310 TFIRAAAIVRK-------KIPDAEGWVIGPTDED-PEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSI- 379 (475)
T ss_pred HHHHHHHHHHH-------hCCCeEEEEECCCCcC-hHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCch-
Confidence 99999997765 3489999999998532 257889999999999999999999 6799999999999999999
Q ss_pred CCCccchHHHHHHHcCCcEEEeCCCCcccceec------CcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 017085 274 WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN------GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYER 347 (377)
Q Consensus 274 ~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~------~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~ 347 (377)
.|++|++++|||+||+|||+|+.|++.|++.+ |.+|+++++.| +++++++|.++++|++.+.++++++++.
T Consensus 380 -~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~~~~~a~~~ 456 (475)
T cd03813 380 -SEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPAD--PEALARAILRLLKDPELRRAMGEAGRKR 456 (475)
T ss_pred -hhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 56999999988 9999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 017085 348 VKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 348 ~~~~f~~~~~~~~~~~~~~ 366 (377)
+.+.|+|+.++++|.++|+
T Consensus 457 v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 457 VERYYTLERMIDSYRRLYL 475 (475)
T ss_pred HHHhCCHHHHHHHHHHHhC
Confidence 9999999999999999984
No 27
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=6e-38 Score=296.28 Aligned_cols=295 Identities=17% Similarity=0.187 Sum_probs=216.8
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecc-------cccc---hh---------hhccccccceeeee
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-------HYFK---LD---------YVKHLPLVAGAMID 116 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~-------~~~~---~~---------~~~~~~~~~~~~~~ 116 (377)
.+||+||+|....+.....+.. .. ..|.+.+.|.... .++. .. -...+..+|.+++.
T Consensus 384 ~~pDlIHahy~d~glva~lla~-~l---gVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IIts 459 (784)
T TIGR02470 384 GKPDLIIGNYSDGNLVASLLAR-KL---GVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITS 459 (784)
T ss_pred CCCCEEEECCCchHHHHHHHHH-hc---CCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEEC
Confidence 4699999998766544433222 12 2477778885421 0111 01 11334568899999
Q ss_pred ccchhhHhhhhhh-----------hhh----hc--cCCCeEEEEcCChhhhHHHhhhhhhhh-----------hhHHHHH
Q 017085 117 SHVTAEYWKNRTR-----------ERL----RI--KMPDTYVVHLGNSKELMEVAEDNVAKR-----------VLREHVR 168 (377)
Q Consensus 117 s~~~~~~~~~~~~-----------~~~----~~--~~~~~~vi~ngi~~~~~~~~~~~~~~~-----------~~~~~~r 168 (377)
|........+... ..+ |+ +.+|+.|||+|+|.+.|.+........ ..+.+.+
T Consensus 460 T~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~ 539 (784)
T TIGR02470 460 TYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDND 539 (784)
T ss_pred cHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHH
Confidence 8633221111100 011 22 557999999999999876543211100 0123445
Q ss_pred HHhCC--CCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc----c---cHHHHHHHHHH
Q 017085 169 ESLGV--RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----Q---TKFESELRNYV 239 (377)
Q Consensus 169 ~~~~~--~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~----~---~~~~~~l~~~~ 239 (377)
+.+|+ ++++++|+++||+.+.||++.+++|+.++.. + .++++|+|+|++... + ..+.+++.+++
T Consensus 540 ~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~-l------~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la 612 (784)
T TIGR02470 540 EHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPK-L------RELVNLVVVAGKLDAKESKDREEQAEIEKMHNLI 612 (784)
T ss_pred HHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHh-h------CCCeEEEEEeCCcccccccchhHHHHHHHHHHHH
Confidence 67776 5677899999999999999999999986642 1 156899999986421 1 12456788899
Q ss_pred HhcCCCCcEEEecCc---CCHHHHHH----hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceee
Q 017085 240 MQKKIQDRVHFVNKT---LTVAPYLA----AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 312 (377)
Q Consensus 240 ~~~~~~~~v~~~g~~---~~~~~~~~----~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~ 312 (377)
+++++.++|.|+|.+ .++.++|+ .+|++++||. .|+||++++|||+||+|||+|+.||+.|++.++.+|++
T Consensus 613 ~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfL 690 (784)
T TIGR02470 613 DQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFH 690 (784)
T ss_pred HHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEE
Confidence 999999999999974 45556654 3579999999 99999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHHHHh----hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 313 HPVGKEGITPLAKNIVKLA----THVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 313 ~~~~~~~~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
+++.| +++++++|.+++ +|++.+.+++.++++++.++|||+.+++++.++.
T Consensus 691 Vdp~D--~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 691 IDPYH--GEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred eCCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99998 999999999876 6999999999999999999999999999998865
No 28
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=2.1e-38 Score=297.23 Aligned_cols=290 Identities=19% Similarity=0.163 Sum_probs=220.4
Q ss_pred hcccEEEEcCchhhhHHHHHhhcC--CCccccceeEEeeeecccc-cc--------------------------hhhhcc
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKED--VPRVLPNVLWWIHEMRGHY-FK--------------------------LDYVKH 106 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~h~~~~~~-~~--------------------------~~~~~~ 106 (377)
.+||+||+|...++.....+.... ......|+++++|+..... +. ......
T Consensus 128 ~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (476)
T cd03791 128 WKPDIIHCHDWHTGLVPALLKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAG 207 (476)
T ss_pred CCCcEEEECchHHHHHHHHHHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHH
Confidence 689999999866544333322211 0112368999999864211 10 011223
Q ss_pred ccccceeeeeccchhhHhhhh-----hhhhhhccCCCeEEEEcCChhhhHHHhhhhh-----------hhhhhHHHHHHH
Q 017085 107 LPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRES 170 (377)
Q Consensus 107 ~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~-----------~~~~~~~~~r~~ 170 (377)
+..+|.++++|...++.+.+. +...+.....++.+|+||+|.+.+.+..... .....+..++++
T Consensus 208 ~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~ 287 (476)
T cd03791 208 IVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEE 287 (476)
T ss_pred HHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHH
Confidence 457899999999888776542 1112233557999999999998876543221 123446778999
Q ss_pred hCCC--CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcE
Q 017085 171 LGVR--NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 248 (377)
Q Consensus 171 ~~~~--~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v 248 (377)
+|++ ++.++|+++||+.++||++.+++++..+.+ .+++|+++|.|.+ .+.+.++++++++ .+++
T Consensus 288 ~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~---------~~~~lvi~G~g~~---~~~~~~~~~~~~~--~~~v 353 (476)
T cd03791 288 LGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLE---------LGGQLVILGSGDP---EYEEALRELAARY--PGRV 353 (476)
T ss_pred cCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHH---------cCcEEEEEecCCH---HHHHHHHHHHHhC--CCcE
Confidence 9985 778999999999999999999999997754 4599999999842 3567777777765 4577
Q ss_pred EEec-Cc-CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCc------ceeeecCCCCCh
Q 017085 249 HFVN-KT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT------TGLLHPVGKEGI 320 (377)
Q Consensus 249 ~~~g-~~-~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~------~g~~~~~~~~~~ 320 (377)
.+.+ .. +.+..+|+.||++++||. .|+||++++|||+||+|||+++.||+.|++.++. +|+++++.| +
T Consensus 354 ~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~--~ 429 (476)
T cd03791 354 AVLIGYDEALAHLIYAGADFFLMPSR--FEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYN--A 429 (476)
T ss_pred EEEEeCCHHHHHHHHHhCCEEECCCC--CCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCC--H
Confidence 7654 44 446789999999999999 9999999999999999999999999999999887 999999988 9
Q ss_pred hHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 321 TPLAKNIVKLAT---HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 321 ~~la~~i~~l~~---~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
++++++|.++++ +++.+.++++++.+ +.|||+.+++++.++|+
T Consensus 430 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 430 DALLAALRRALALYRDPEAWRKLQRNAMA---QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhc---cCCChHHHHHHHHHHHh
Confidence 999999999875 67777777777654 57999999999999996
No 29
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1.9e-38 Score=290.85 Aligned_cols=282 Identities=24% Similarity=0.294 Sum_probs=217.3
Q ss_pred HhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccc------ccchhh--------hccccccceeeeecc
Q 017085 53 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDY--------VKHLPLVAGAMIDSH 118 (377)
Q Consensus 53 ~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~------~~~~~~--------~~~~~~~~~~~~~s~ 118 (377)
....++|+||++....+.++.... .+ .+++++.|..... .....+ ...++.+|.++++|.
T Consensus 90 ~~~~~~Dvi~~~~~~~~~~~~~~~---~~---~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s~ 163 (392)
T cd03805 90 LPDEKYDVFIVDQVSACVPLLKLF---SP---SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMADKIVVNSN 163 (392)
T ss_pred cccCCCCEEEEcCcchHHHHHHHh---cC---CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhCceEEEEcCh
Confidence 345789999998755443322111 11 4788888843211 111111 123567899999999
Q ss_pred chhhHhhhhhhhhhhc-cCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHH
Q 017085 119 VTAEYWKNRTRERLRI-KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 197 (377)
Q Consensus 119 ~~~~~~~~~~~~~~~~-~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~ 197 (377)
...+.+.+ .++. ...++.+|+||+|.+.+.+.... ..++....+++.++++++||+.+.||++.+++
T Consensus 164 ~~~~~~~~----~~~~~~~~~~~vi~n~vd~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~ 231 (392)
T cd03805 164 FTASVFKK----TFPSLAKNPREVVYPCVDTDSFESTSED--------PDPGLLIPKSGKKTFLSINRFERKKNIALAIE 231 (392)
T ss_pred hHHHHHHH----HhcccccCCcceeCCCcCHHHcCccccc--------ccccccccCCCceEEEEEeeecccCChHHHHH
Confidence 99888765 3332 23334699999998877543211 02233445577899999999999999999999
Q ss_pred HHHHHHHHHhhhcccCCCeEEEEEecCCCc---ccHHHHHHHHHHHh-cCCCCcEEEecCc--CCHHHHHHhcCEEEecC
Q 017085 198 SFYESLELIKEKKLEVPSVHAVIIGSDMNA---QTKFESELRNYVMQ-KKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 198 a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~---~~~~~~~l~~~~~~-~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps 271 (377)
++.++.+..+ +.++++|+++|+++.. ...+.+++++.+++ +++.++|+|+|++ +++..+|+.||++++||
T Consensus 232 a~~~l~~~~~----~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s 307 (392)
T cd03805 232 AFAILKDKLA----EFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTP 307 (392)
T ss_pred HHHHHHhhcc----cccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECC
Confidence 9998765210 0168999999987532 12356788999999 9999999999997 56789999999999999
Q ss_pred CCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 017085 272 QAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 351 (377)
Q Consensus 272 ~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 351 (377)
. .|+||++++|||+||+|||+|+.++..|++.++.+|+++++ | +++++++|.+++++++.+.++++++++.+.++
T Consensus 308 ~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~--~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~ 382 (392)
T cd03805 308 S--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-T--PEEFAEAMLKLANDPDLADRMGAAGRKRVKEK 382 (392)
T ss_pred C--cCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-C--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 9 89999999999999999999999999999999889999875 6 89999999999999999999999999999999
Q ss_pred cCHHHHHHHH
Q 017085 352 FQEHHMAERI 361 (377)
Q Consensus 352 f~~~~~~~~~ 361 (377)
|+|+.+++++
T Consensus 383 ~s~~~~~~~~ 392 (392)
T cd03805 383 FSTEAFAERL 392 (392)
T ss_pred cCHHHHhhhC
Confidence 9999998764
No 30
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=1.2e-37 Score=281.83 Aligned_cols=316 Identities=22% Similarity=0.211 Sum_probs=244.4
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceE--E--------EccchhHHHhhhcccEEEEcCchhhhH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--I--------SAKGQETINTALKADLIVLNTAVAGKW 71 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~Div~~~~~~~~~~ 71 (377)
++++.|.++||+|++++........... .....+..+ . ........++..++|+||+|.......
T Consensus 19 ~~~~~L~~~g~~v~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~ 93 (355)
T cd03799 19 REILALEAAGHEVEIFSLRPPEDTLVHP-----EDRAELARTRYLARSLALLAQALVLARELRRLGIDHIHAHFGTTPAT 93 (355)
T ss_pred HHHHHHHhCCCeEEEEEecCcccccccc-----cccccccchHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCchHH
Confidence 5788999999999999966543211100 000000000 0 001122333558999999998654433
Q ss_pred HHHHhhcCCCccccceeEEeeeecccccc--hhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhh
Q 017085 72 LDAVLKEDVPRVLPNVLWWIHEMRGHYFK--LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKE 149 (377)
Q Consensus 72 ~~~~~~~~~~~~~~~~v~~~h~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~ 149 (377)
+........ ..+++++.|+....... ......++.++.+++.|....+++.+ .++.+..++.++|||+|.+
T Consensus 94 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~----~~~~~~~~~~vi~~~~d~~ 166 (355)
T cd03799 94 VAMLASRLG---GIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIR----LLGCDPDKIHVVHCGVDLE 166 (355)
T ss_pred HHHHHHHhc---CCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHH----hcCCCcccEEEEeCCcCHH
Confidence 333322211 35788888865332222 25556678899999999999888876 4466778999999999988
Q ss_pred hHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCccc
Q 017085 150 LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT 229 (377)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~ 229 (377)
.+.... .....+.+.++++|++.+.||++.+++++..+.+ +.++++++++|.+
T Consensus 167 ~~~~~~---------------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~-------~~~~~~l~i~G~~----- 219 (355)
T cd03799 167 RFPPRP---------------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKD-------RGIDFRLDIVGDG----- 219 (355)
T ss_pred HcCCcc---------------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhh-------cCCCeEEEEEECC-----
Confidence 765332 0112566889999999999999999999997654 3378999999998
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCC------CccchHHHHHHHcCCcEEEeCCCCcc
Q 017085 230 KFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG------ECFGRITIEAMAFQLPVLGTAAGGTT 301 (377)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~------e~~~~~~~Ea~a~g~PvI~s~~~~~~ 301 (377)
+..+.+++.++++++.++|.+.|+. +++.++|+.||++++||. . |++|++++|||++|+|||+++.++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~--~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~ 297 (355)
T cd03799 220 PLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSV--TAADGDREGLPVVLMEAMAMGLPVISTDVSGIP 297 (355)
T ss_pred ccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecce--ecCCCCccCccHHHHHHHHcCCCEEecCCCCcc
Confidence 4567888888899999999999997 789999999999999999 7 99999999999999999999999999
Q ss_pred cceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 017085 302 EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 360 (377)
Q Consensus 302 e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 360 (377)
+++.++.+|++++++| +++++++|.+++++++.+.++++++++.+.++|||+.++++
T Consensus 298 ~~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 298 ELVEDGETGLLVPPGD--PEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred hhhhCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 9999988999999888 99999999999999999999999999999999999999875
No 31
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=9.2e-38 Score=282.10 Aligned_cols=321 Identities=13% Similarity=0.148 Sum_probs=231.7
Q ss_pred cHhhHHHhc--CceEEEEEecCCCcchhHhhhhhh--hhcccCceEEE----ccchhHHHhhhcccEEEEcCchhhhHHH
Q 017085 2 ELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEH--KMWDRGVQVIS----AKGQETINTALKADLIVLNTAVAGKWLD 73 (377)
Q Consensus 2 ~la~~L~~~--G~eV~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~Div~~~~~~~~~~~~ 73 (377)
+++++|.++ ||+|++++........ ....... ......+.... ...+..++++.+||+||+|+..+..+..
T Consensus 22 ~l~~~L~~~~~g~~v~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~ 100 (359)
T PRK09922 22 NVINTFEESKINCEMFFFCRNDKMDKA-WLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWLKETQPDIVICIDVISCLYAN 100 (359)
T ss_pred HHHHHhhhcCcceeEEEEecCCCCChH-HHHhcchhcccccchhhhhcccHHHHHHHHHHHhcCCCEEEEcCHHHHHHHH
Confidence 689999999 8999999865542211 1100100 00001111111 1234466778999999999876554333
Q ss_pred HHhh-cCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHH
Q 017085 74 AVLK-EDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELME 152 (377)
Q Consensus 74 ~~~~-~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~ 152 (377)
.+.. ...+ .+++.+.|.......... ...+..+|.++++|....+++. .++++.+++.++|||+|.+.+.
T Consensus 101 ~~~~~~~~~---~~~~~~~h~~~~~~~~~~-~~~~~~~d~~i~~S~~~~~~~~-----~~~~~~~ki~vi~N~id~~~~~ 171 (359)
T PRK09922 101 KARKKSGKQ---FKIFSWPHFSLDHKKHAE-CKKITCADYHLAISSGIKEQMM-----ARGISAQRISVIYNPVEIKTII 171 (359)
T ss_pred HHHHHhCCC---CeEEEEecCcccccchhh-hhhhhcCCEEEEcCHHHHHHHH-----HcCCCHHHEEEEcCCCCHHHcc
Confidence 3222 1221 245566664322111111 1224788999999999888775 3467778899999999965432
Q ss_pred HhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecccc--ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccH
Q 017085 153 VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS--RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK 230 (377)
Q Consensus 153 ~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~--~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~ 230 (377)
..... ..++++++++||+. +.||++.+++++..+. ++++|+++|+| +
T Consensus 172 ~~~~~----------------~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~----------~~~~l~ivG~g-----~ 220 (359)
T PRK09922 172 IPPPE----------------RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT----------GEWQLHIIGDG-----S 220 (359)
T ss_pred CCCcc----------------cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC----------CCeEEEEEeCC-----c
Confidence 11100 13467899999986 4699999999998651 47999999998 4
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcC----CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC-CCCccccee
Q 017085 231 FESELRNYVMQKKIQDRVHFVNKTL----TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA-AGGTTEIVV 305 (377)
Q Consensus 231 ~~~~l~~~~~~~~~~~~v~~~g~~~----~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~-~~~~~e~~~ 305 (377)
..+.+++.+++++++++|+|+|+++ ++.++|+.||++++||. .||||++++||||||+|||+|+ .+|..|++.
T Consensus 221 ~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~--~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~ 298 (359)
T PRK09922 221 DFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSK--FEGFPMTLLEAMSYGIPCISSDCMSGPRDIIK 298 (359)
T ss_pred cHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCc--ccCcChHHHHHHHcCCCEEEeCCCCChHHHcc
Confidence 5788999999999999999999873 46777888999999999 9999999999999999999999 899999999
Q ss_pred cCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 017085 306 NGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 370 (377)
Q Consensus 306 ~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 370 (377)
++.+|++++++| +++++++|.+++++++.+. ..+.....++|+.+.+.+++.++|..+++
T Consensus 299 ~~~~G~lv~~~d--~~~la~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 299 PGLNGELYTPGN--IDEFVGKLNKVISGEVKYQ---HDAIPNSIERFYEVLYFKNLNNALFSKLQ 358 (359)
T ss_pred CCCceEEECCCC--HHHHHHHHHHHHhCcccCC---HHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999999999988 9999999999999997541 22333344668999999999999998765
No 32
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.2e-37 Score=288.86 Aligned_cols=294 Identities=17% Similarity=0.145 Sum_probs=223.7
Q ss_pred hcccEEEEcCchhhhHHHHHhhcC---CCccccceeEEeeeecccc-cch-----------------------hhhcccc
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKED---VPRVLPNVLWWIHEMRGHY-FKL-----------------------DYVKHLP 108 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~h~~~~~~-~~~-----------------------~~~~~~~ 108 (377)
.+|||||+|+-.++.....+.... ......|+|.|+|+..... +.. ..+..+.
T Consensus 140 ~~pDiiH~hdw~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~ 219 (489)
T PRK14098 140 WKPDIIHCHDWYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVE 219 (489)
T ss_pred CCCCEEEecCcHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHH
Confidence 479999999844443222221111 0112368999999864210 000 0111236
Q ss_pred ccceeeeeccchhhHhhhhhhhhhhcc------CCCeEEEEcCChhhhHHHhhhhh-----------hhhhhHHHHHHHh
Q 017085 109 LVAGAMIDSHVTAEYWKNRTRERLRIK------MPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESL 171 (377)
Q Consensus 109 ~~~~~~~~s~~~~~~~~~~~~~~~~~~------~~~~~vi~ngi~~~~~~~~~~~~-----------~~~~~~~~~r~~~ 171 (377)
.+|.++++|...++.+.+.-...+|++ ..++.+|+||+|.+.|.+..... .+...+..+++++
T Consensus 220 ~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~l 299 (489)
T PRK14098 220 HADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEV 299 (489)
T ss_pred hcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHh
Confidence 789999999999887754211123332 67899999999999887643211 1223467788899
Q ss_pred CCCC--CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE
Q 017085 172 GVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 249 (377)
Q Consensus 172 ~~~~--~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~ 249 (377)
|++. +.++|+++||+.++||++.+++|+..+.+ .+++|+|+|+|.. .+.+.++++++++ +++|.
T Consensus 300 gl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~---------~~~~lvivG~G~~---~~~~~l~~l~~~~--~~~V~ 365 (489)
T PRK14098 300 GLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE---------LDIQLVICGSGDK---EYEKRFQDFAEEH--PEQVS 365 (489)
T ss_pred CCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh---------cCcEEEEEeCCCH---HHHHHHHHHHHHC--CCCEE
Confidence 9974 56899999999999999999999998754 5799999999842 3567888888877 46899
Q ss_pred EecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec----CcceeeecCCCCChhHH
Q 017085 250 FVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN----GTTGLLHPVGKEGITPL 323 (377)
Q Consensus 250 ~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~----~~~g~~~~~~~~~~~~l 323 (377)
|.|.. +++..+|++||++++||. .|+||++.+|||++|+|+|+++.||+.|.+.+ +.+|+++++.| +++|
T Consensus 366 ~~g~~~~~~~~~~~a~aDi~l~PS~--~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d--~~~l 441 (489)
T PRK14098 366 VQTEFTDAFFHLAIAGLDMLLMPGK--IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYT--PEAL 441 (489)
T ss_pred EEEecCHHHHHHHHHhCCEEEeCCC--CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCC--HHHH
Confidence 99976 457899999999999999 99999999999999999999999999988864 67999999988 9999
Q ss_pred HHHHHHHh---hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 017085 324 AKNIVKLA---THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 370 (377)
Q Consensus 324 a~~i~~l~---~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 370 (377)
+++|.+++ +|++.+.+++.++. .++|||+.++++|+++|++++.
T Consensus 442 a~ai~~~l~~~~~~~~~~~~~~~~~---~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 442 VAKLGEALALYHDEERWEELVLEAM---ERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHhc
Confidence 99999865 57887777776653 4789999999999999999874
No 33
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=7e-37 Score=277.15 Aligned_cols=309 Identities=17% Similarity=0.183 Sum_probs=231.4
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc-----------cchhHHHhhhcccEEEEcCchhhh
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----------KGQETINTALKADLIVLNTAVAGK 70 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~Div~~~~~~~~~ 70 (377)
+++++|.+.||+|++++....... ........++.++.. .....+++..+||+||+|......
T Consensus 20 ~l~~~L~~~~~~v~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~~ 93 (358)
T cd03812 20 NYYRNLDRSKIQFDFLVTSKEEGD------YDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKNKYDIVHVHGSSASG 93 (358)
T ss_pred HHHHhcCccceEEEEEEeCCCCcc------hHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcCCCCEEEEeCcchhH
Confidence 578999989999999997654321 112222334444321 123334467899999999876433
Q ss_pred HHHHHhhcCCCccccceeEEeeeeccccc--chh------hhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEE
Q 017085 71 WLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KLD------YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV 142 (377)
Q Consensus 71 ~~~~~~~~~~~~~~~~~v~~~h~~~~~~~--~~~------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi 142 (377)
+...+... . ..+.++.+.|....... ... .......++.++++|....+++... .+..++.+|
T Consensus 94 ~~~~~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~------~~~~~~~vi 164 (358)
T cd03812 94 FILLAAKK-A--GVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGK------VKNKKFKVI 164 (358)
T ss_pred HHHHHHhh-C--CCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhC------CCcccEEEE
Confidence 33322221 1 12345677776542211 111 1223467889999999888776542 356789999
Q ss_pred EcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEe
Q 017085 143 HLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG 222 (377)
Q Consensus 143 ~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G 222 (377)
|||+|...+...... +.. ++..+..+++++|+++||+.+.||++.+++++..+.+ +.++++++|+|
T Consensus 165 ~ngvd~~~~~~~~~~------~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~-------~~~~~~l~ivG 230 (358)
T cd03812 165 PNGIDLEKFIFNEEI------RKK-RRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLK-------KNPNAKLLLVG 230 (358)
T ss_pred eccCcHHHcCCCchh------hhH-HHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHH-------hCCCeEEEEEe
Confidence 999999876543211 111 5567777888999999999999999999999998765 44899999999
Q ss_pred cCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCccc
Q 017085 223 SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE 302 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e 302 (377)
+| +..+.+++.++++++.++|.++|+.+++.++|+.||++++||. .|++|++++|||++|+|||+|+.++..+
T Consensus 231 ~g-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~E~~~~~~lEAma~G~PvI~s~~~~~~~ 303 (358)
T cd03812 231 DG-----ELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSL--YEGLPLVLIEAQASGLPCILSDTITKEV 303 (358)
T ss_pred CC-----chHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEeccc--ccCCCHHHHHHHHhCCCEEEEcCCchhh
Confidence 98 4667888888899999999999998999999999999999999 8999999999999999999999999999
Q ss_pred ceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 017085 303 IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 349 (377)
Q Consensus 303 ~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 349 (377)
++.+ +.|++...++ +++++++|.++++|++.++.+...+.....
T Consensus 304 ~i~~-~~~~~~~~~~--~~~~a~~i~~l~~~~~~~~~~~~~~~~~~~ 347 (358)
T cd03812 304 DLTD-LVKFLSLDES--PEIWAEEILKLKSEDRRERSSESIKKKGLD 347 (358)
T ss_pred hhcc-CccEEeCCCC--HHHHHHHHHHHHhCcchhhhhhhhhhccch
Confidence 9987 4666666655 899999999999999998888887766443
No 34
>PLN00142 sucrose synthase
Probab=100.00 E-value=8.3e-37 Score=288.55 Aligned_cols=295 Identities=16% Similarity=0.172 Sum_probs=212.6
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecc-------ccc---chh---------hhccccccceeeee
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-------HYF---KLD---------YVKHLPLVAGAMID 116 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~-------~~~---~~~---------~~~~~~~~~~~~~~ 116 (377)
.+||+||+|...++.....+... . ..|.+.+.|.... .++ ... -...+..+|.+++.
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~-l---gVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIas 482 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHK-L---GVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNHADFIITS 482 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHH-h---CCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHHHHHhhhHHHhC
Confidence 35999999976665443333321 1 2588899995421 000 000 12233577778877
Q ss_pred ccchhhHhhhhh--------------hh-hhhc--cCCCeEEEEcCChhhhHHHhhhhhhh-----------hhhHHHHH
Q 017085 117 SHVTAEYWKNRT--------------RE-RLRI--KMPDTYVVHLGNSKELMEVAEDNVAK-----------RVLREHVR 168 (377)
Q Consensus 117 s~~~~~~~~~~~--------------~~-~~~~--~~~~~~vi~ngi~~~~~~~~~~~~~~-----------~~~~~~~r 168 (377)
+........... .+ --|+ ..+++.|||+|+|...|.+....... .....+.+
T Consensus 483 T~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~ 562 (815)
T PLN00142 483 TYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQND 562 (815)
T ss_pred cHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHH
Confidence 754432111000 00 0122 25689999999999877643211100 01122334
Q ss_pred HHhCC--CCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCC-Cc---cc---HHHHHHHHHH
Q 017085 169 ESLGV--RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM-NA---QT---KFESELRNYV 239 (377)
Q Consensus 169 ~~~~~--~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~-~~---~~---~~~~~l~~~~ 239 (377)
+.+|+ +++.++|+++||+.+.||++.+++|+.++.+ ..++++|+|+|++. +. .. ...+++.+++
T Consensus 563 e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~-------l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La 635 (815)
T PLN00142 563 EHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKR-------LRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLI 635 (815)
T ss_pred HHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHH-------hCCCcEEEEEECCccccccccHHHHHHHHHHHHHH
Confidence 56775 4566789999999999999999999987643 22679999999872 11 11 1235678889
Q ss_pred HhcCCCCcEEEecCc------CCHHHHHH-hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceee
Q 017085 240 MQKKIQDRVHFVNKT------LTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL 312 (377)
Q Consensus 240 ~~~~~~~~v~~~g~~------~~~~~~~~-~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~ 312 (377)
+++++.++|.|+|.+ .++..+++ ++|++++||. .|+||++++|||+||+|||+|+.||..|++.++.+|++
T Consensus 636 ~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~L 713 (815)
T PLN00142 636 EKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFH 713 (815)
T ss_pred HHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEE
Confidence 999999999999864 24555555 4799999999 99999999999999999999999999999999999999
Q ss_pred ecCCCCChhHHHHHHHHH----hhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 313 HPVGKEGITPLAKNIVKL----ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 313 ~~~~~~~~~~la~~i~~l----~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
+++.| +++++++|.++ ++|++.+.+|+++|++++.++|||+.+++++.++.
T Consensus 714 V~P~D--~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 714 IDPYH--GDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred eCCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99998 99999998764 47999999999999999999999999999999864
No 35
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=1.2e-36 Score=278.90 Aligned_cols=326 Identities=13% Similarity=0.065 Sum_probs=225.3
Q ss_pred CcHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccch-------------------------hHHHhh
Q 017085 1 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------------------------ETINTA 55 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~ 55 (377)
+++|+.|.++||+|+|++......... .....|+.++..... ..+++.
T Consensus 21 ~~~a~~L~~~G~~V~ii~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (415)
T cd03816 21 QYHALSLAKHGWKVDLVGYLETPPHDE-------ILSNPNITIHPLPPPPQRLNKLPFLLFAPLKVLWQFFSLLWLLYKL 93 (415)
T ss_pred HHHHHHHHhcCceEEEEEecCCCCCHH-------HhcCCCEEEEECCCCccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 368999999999999999765332111 012334444332110 112345
Q ss_pred hcccEEEEcCchhh--hHHHHHhhcCCCccccceeEEeeeecccc----------c----chhhhccccccceeeeeccc
Q 017085 56 LKADLIVLNTAVAG--KWLDAVLKEDVPRVLPNVLWWIHEMRGHY----------F----KLDYVKHLPLVAGAMIDSHV 119 (377)
Q Consensus 56 ~~~Div~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~h~~~~~~----------~----~~~~~~~~~~~~~~~~~s~~ 119 (377)
.+||+||+|.+... .++..+.... ..+|++.+.|+.+... . .......++.+|.++++|..
T Consensus 94 ~~~Dvi~~~~~~~~~~~~~a~~~~~~---~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~vS~~ 170 (415)
T cd03816 94 RPADYILIQNPPSIPTLLIAWLYCLL---RRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGRLADYNLCVTKA 170 (415)
T ss_pred CCCCEEEEeCCCCchHHHHHHHHHHH---hCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhhcCCEeeecCHH
Confidence 68999999875422 1112111111 1257888899863210 0 00112334678999999999
Q ss_pred hhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHH-------------HhCC-CCCCeEEEEecc
Q 017085 120 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE-------------SLGV-RNEDLLFAIINS 185 (377)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~-------------~~~~-~~~~~~i~~~G~ 185 (377)
+.+++. .++.+.+++.|||||. ...|.+.+.... ....++ ..++ +++..+++++||
T Consensus 171 ~~~~l~-----~~~~~~~ki~vI~Ng~-~~~f~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~gr 240 (415)
T cd03816 171 MKEDLQ-----QFNNWKIRATVLYDRP-PEQFRPLPLEEK----HELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTS 240 (415)
T ss_pred HHHHHH-----hhhccCCCeeecCCCC-HHHceeCcHHHH----HHHHHhccccccccccccccceecCCCceEEEEecc
Confidence 988875 3567889999999995 444443221110 111110 1122 244567888999
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHh
Q 017085 186 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA 263 (377)
Q Consensus 186 ~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ 263 (377)
+.+.||++.+++|+..+.+...+. ..+++++|+|+|+| +..++++++++++++++.+.+.|+. +++.++|++
T Consensus 241 l~~~K~~~~li~A~~~l~~~~~~~-~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~ 314 (415)
T cd03816 241 WTPDEDFGILLDALVAYEKSAATG-PKLPKLLCIITGKG-----PLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS 314 (415)
T ss_pred ccCCCCHHHHHHHHHHHHHhhccc-ccCCCEEEEEEecC-----ccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh
Confidence 999999999999999875422110 02368999999998 4678999999999997544455654 889999999
Q ss_pred cCEEEecCCC-CCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhC---HHHHHH
Q 017085 264 IDVLVQNSQA-WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH---VERRLT 339 (377)
Q Consensus 264 adv~l~ps~~-~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~---~~~~~~ 339 (377)
||++++|+.. ..+++|++++||||||+|||+|+.++..|++.++.+|++++ | +++++++|.++++| ++.+.+
T Consensus 315 aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~--d--~~~la~~i~~ll~~~~~~~~~~~ 390 (415)
T cd03816 315 ADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFG--D--SEELAEQLIDLLSNFPNRGKLNS 390 (415)
T ss_pred CCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEEC--C--HHHHHHHHHHHHhcCCCHHHHHH
Confidence 9999975431 14789999999999999999999999999999999999984 5 99999999999999 999999
Q ss_pred HHHHHHHHHHHhcCHHHHH
Q 017085 340 MGKRGYERVKEIFQEHHMA 358 (377)
Q Consensus 340 ~~~~~~~~~~~~f~~~~~~ 358 (377)
|++++++... ++|+..-
T Consensus 391 m~~~~~~~~~--~~~~~~~ 407 (415)
T cd03816 391 LKKGAQEESE--LRWDENW 407 (415)
T ss_pred HHHHHHHhhh--cCHHHHH
Confidence 9999998763 5555443
No 36
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=9.5e-37 Score=276.98 Aligned_cols=306 Identities=21% Similarity=0.230 Sum_probs=235.6
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCchhhhHHHHHhhcCCC
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVP 81 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~ 81 (377)
+++++|.++||+|++++.... .+....+..+||+||+|......+....+....
T Consensus 21 ~l~~~l~~~G~~v~v~~~~~~-------------------------~~~~~~~~~~~diih~~~~~~~~~~~~~~~~~~- 74 (365)
T cd03825 21 RLHRALQAAGVDSTMLVQEKK-------------------------ALISKIEIINADIVHLHWIHGGFLSIEDLSKLL- 74 (365)
T ss_pred HHHHHHHhcCCceeEEEeecc-------------------------hhhhChhcccCCEEEEEccccCccCHHHHHHHH-
Confidence 588999999999999997753 233345678899999987543322221111111
Q ss_pred ccccceeEEeeeecccccc------------------------------hhh---hccc-cccceeeeeccchhhHhhhh
Q 017085 82 RVLPNVLWWIHEMRGHYFK------------------------------LDY---VKHL-PLVAGAMIDSHVTAEYWKNR 127 (377)
Q Consensus 82 ~~~~~~v~~~h~~~~~~~~------------------------------~~~---~~~~-~~~~~~~~~s~~~~~~~~~~ 127 (377)
...|+++++|+....... ..+ ...+ ...+.++++|....+.+.+
T Consensus 75 -~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~- 152 (365)
T cd03825 75 -DRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIVAPSRWLADCARS- 152 (365)
T ss_pred -cCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEEehhHHHHHHHHh-
Confidence 135899999986421100 000 0011 2345688888877777654
Q ss_pred hhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccc--cchhHHHHHHHHHHHHH
Q 017085 128 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR--GKGQDLFLHSFYESLEL 205 (377)
Q Consensus 128 ~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~--~Kg~~~ll~a~~~l~~~ 205 (377)
.+.++..++.++|||+|.+.+.+.. +...++.++++++..+++++|+... .||++.+++++..+.+.
T Consensus 153 ---~~~~~~~~~~vi~ngi~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~ 221 (365)
T cd03825 153 ---SSLFKGIPIEVIPNGIDTTIFRPRD--------KREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAER 221 (365)
T ss_pred ---ccccCCCceEEeCCCCcccccCCCc--------HHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhc
Confidence 3446678999999999988764332 3456778888888888877777655 89999999999876431
Q ss_pred HhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcC---CHHHHHHhcCEEEecCCCCCCccchHH
Q 017085 206 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL---TVAPYLAAIDVLVQNSQAWGECFGRIT 282 (377)
Q Consensus 206 l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~---~~~~~~~~adv~l~ps~~~~e~~~~~~ 282 (377)
..++++++++|++... .. .++.+++.++|+.+ ++..+|+.||++++||. .|++|+++
T Consensus 222 ------~~~~~~~~i~G~~~~~-----~~-------~~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~--~e~~g~~~ 281 (365)
T cd03825 222 ------WKDDIELVVFGASDPE-----IP-------PDLPFPVHYLGSLNDDESLALIYSAADVFVVPSL--QENFPNTA 281 (365)
T ss_pred ------cCCCeEEEEeCCCchh-----hh-------ccCCCceEecCCcCCHHHHHHHHHhCCEEEeccc--cccccHHH
Confidence 0378999999998421 11 14457899999974 58899999999999999 99999999
Q ss_pred HHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017085 283 IEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 362 (377)
Q Consensus 283 ~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 362 (377)
+|||++|+|||+++.++..|++.++.+|++++..| +++++++|.+++++++.+.++++++++.+.++|||+.+++++.
T Consensus 282 ~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 359 (365)
T cd03825 282 IEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGD--PEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYL 359 (365)
T ss_pred HHHHhcCCCEEEecCCCChhheeCCCceEEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999888999999888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 017085 363 VVLKEV 368 (377)
Q Consensus 363 ~~~~~~ 368 (377)
++|+++
T Consensus 360 ~~y~~~ 365 (365)
T cd03825 360 SLYEEL 365 (365)
T ss_pred HHHhhC
Confidence 999863
No 37
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=2.3e-36 Score=274.39 Aligned_cols=334 Identities=19% Similarity=0.161 Sum_probs=235.3
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCchh--hhHHHHHhhcC
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVA--GKWLDAVLKED 79 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~--~~~~~~~~~~~ 79 (377)
+|+++|.+.||+|++++..................................++..+||+||++.... ...........
T Consensus 21 ~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~ 100 (366)
T cd03822 21 DLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLL 100 (366)
T ss_pred HHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHH
Confidence 6899999999999999965443221111000000000000001112334556778999999987221 11111111111
Q ss_pred CCccccceeEEeeeeccc----ccchhhhccccccceeeeec-cchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHh
Q 017085 80 VPRVLPNVLWWIHEMRGH----YFKLDYVKHLPLVAGAMIDS-HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVA 154 (377)
Q Consensus 80 ~~~~~~~~v~~~h~~~~~----~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~ 154 (377)
......|++++.|+.... .........++.+|.+++.| ....+.+.. ....++.++|||++...+...
T Consensus 101 ~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~ 173 (366)
T cd03822 101 LRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLR-------AYPEKIAVIPHGVPDPPAEPP 173 (366)
T ss_pred HhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhh-------cCCCcEEEeCCCCcCcccCCc
Confidence 112236899999996211 11223344567899999997 222222221 114689999999987765432
Q ss_pred hhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHH
Q 017085 155 EDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE 234 (377)
Q Consensus 155 ~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 234 (377)
.. .++...+.+.++++++|++.+.||++.+++++..+.+ +.++++|+++|++.+........
T Consensus 174 ~~-----------~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~-------~~~~~~l~i~G~~~~~~~~~~~~ 235 (366)
T cd03822 174 ES-----------LKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVA-------KHPDVRLLVAGETHPDLERYRGE 235 (366)
T ss_pred hh-----------hHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHh-------hCCCeEEEEeccCccchhhhhhh
Confidence 11 1334445677899999999999999999999997755 34789999999975432111111
Q ss_pred HHHHHHhcCCCCcEEEecC-c--CCHHHHHHhcCEEEecCCCCCC--ccchHHHHHHHcCCcEEEeCCCCcccceecCcc
Q 017085 235 LRNYVMQKKIQDRVHFVNK-T--LTVAPYLAAIDVLVQNSQAWGE--CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTT 309 (377)
Q Consensus 235 l~~~~~~~~~~~~v~~~g~-~--~~~~~~~~~adv~l~ps~~~~e--~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~ 309 (377)
..++++++++.++|.|+|. . +++.++|+.||++++||. .| ++|++++|||++|+|||+++.++ .+.+.++.+
T Consensus 236 ~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~--~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~~~~ 312 (366)
T cd03822 236 AYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYR--SADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLDGGT 312 (366)
T ss_pred hHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEeccc--ccccccchHHHHHHHcCCCEEecCCCC-hheeeeCCC
Confidence 1134788899999999987 4 789999999999999999 88 99999999999999999999999 666777889
Q ss_pred eeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 310 GLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 310 g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
|++++++| +++++++|..++++++.+.++++++++.+.+ |||+.+++++.++|+
T Consensus 313 g~~~~~~d--~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 313 GLLVPPGD--PAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAERYLRLLA 366 (366)
T ss_pred cEEEcCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHhC
Confidence 99999988 9999999999999999999999999998877 999999999999874
No 38
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=2.1e-36 Score=274.99 Aligned_cols=329 Identities=19% Similarity=0.172 Sum_probs=236.8
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhh-----hhhcc--cC-ce-EEE-ccchhHHHhhhcccEEEEcCchhhhH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE-----HKMWD--RG-VQ-VIS-AKGQETINTALKADLIVLNTAVAGKW 71 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~-----~~~~~--~~-~~-~~~-~~~~~~~~~~~~~Div~~~~~~~~~~ 71 (377)
+|+++|.+.||+|++++............... ..... .. .. ... ...........++|+||+|+......
T Consensus 22 ~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~ 101 (375)
T cd03821 22 NLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAWLRLNIREADIVHVHGLWSYPS 101 (375)
T ss_pred HHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHHHHHhCCCCCEEEEecccchHH
Confidence 68999999999999999765542221110000 00000 00 00 000 00112223446899999998543222
Q ss_pred HHHHhhcCCCccccceeEEeeeeccccc--chh----------hhccccccceeeeeccchhhHhhhhhhhhhhccCCCe
Q 017085 72 LDAVLKEDVPRVLPNVLWWIHEMRGHYF--KLD----------YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDT 139 (377)
Q Consensus 72 ~~~~~~~~~~~~~~~~v~~~h~~~~~~~--~~~----------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (377)
....... +....|++++.|+....+. ... .......++.+++.+......... +.+..++
T Consensus 102 ~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~------~~~~~~~ 173 (375)
T cd03821 102 LAAARAA--RKYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSEQEAAEIRR------LGLKAPI 173 (375)
T ss_pred HHHHHHH--HHhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCHHHHHHHHh------hCCcccE
Confidence 2221111 1123578888997644332 100 112234567777777554443332 2355789
Q ss_pred EEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEE
Q 017085 140 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV 219 (377)
Q Consensus 140 ~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ 219 (377)
.++|||+|.+.+...... .. |+.++.+++.++++++|++.+.||++.+++++..+.+ +.++++|+
T Consensus 174 ~vi~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~-------~~~~~~l~ 238 (375)
T cd03821 174 AVIPNGVDIPPFAALPSR-------GR-RRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAE-------RFPDWHLV 238 (375)
T ss_pred EEcCCCcChhccCcchhh-------hh-hhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhh-------hcCCeEEE
Confidence 999999998876543211 11 6777788889999999999999999999999997765 34789999
Q ss_pred EEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC
Q 017085 220 IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 220 i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
++|.+.. .+...++..++++++.++|+|+|++ +++.++|+.||++++||. .|++|++++|||++|+|||+++.
T Consensus 239 i~G~~~~---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~ 313 (375)
T cd03821 239 IAGPDEG---GYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSH--SENFGIVVAEALACGTPVVTTDK 313 (375)
T ss_pred EECCCCc---chHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccc--cCCCCcHHHHHHhcCCCEEEcCC
Confidence 9998643 2455566666889999999999998 489999999999999999 89999999999999999999999
Q ss_pred CCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017085 298 GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 362 (377)
Q Consensus 298 ~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 362 (377)
++..+++.+ ..|++++.+ .++++++|.+++++++.+.++++++++.+.++|+|+.+++++.
T Consensus 314 ~~~~~~~~~-~~~~~~~~~---~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 314 VPWQELIEY-GCGWVVDDD---VDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred CCHHHHhhc-CceEEeCCC---hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 999999988 788888753 6999999999999999999999999999899999999999875
No 39
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3e-36 Score=272.86 Aligned_cols=313 Identities=26% Similarity=0.264 Sum_probs=235.4
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc-------------cchhHH-HhhhcccEEEEcCch
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-------------KGQETI-NTALKADLIVLNTAV 67 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~Div~~~~~~ 67 (377)
+|+++|.++||+|++++........... ..+..+... .....+ ....+||+||+|.+.
T Consensus 22 ~l~~~L~~~g~~v~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~ 93 (357)
T cd03795 22 DLAEGLAARGIEVAVLCASPEPKGRDEE--------RNGHRVIRAPSLLNVASTPFSPSFFKQLKKLAKKADVIHLHFPN 93 (357)
T ss_pred HHHHHHHhCCCceEEEecCCCCcchhhh--------ccCceEEEeecccccccccccHHHHHHHHhcCCCCCEEEEecCc
Confidence 6899999999999999976543222111 011111110 001111 346789999999876
Q ss_pred hhhHHHHHhhcCCCccccceeEEeeeeccc------ccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEE
Q 017085 68 AGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYV 141 (377)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v 141 (377)
........... ...+.+.+.|+.... .+.......+..+|.+++.|....+.+.. ..+. ..++.+
T Consensus 94 ~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~----~~~~-~~~~~~ 164 (357)
T cd03795 94 PLADLALLLLP----RKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPV----LRRF-RDKVRV 164 (357)
T ss_pred chHHHHHHHhc----cCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHH----hcCC-ccceEE
Confidence 44333222221 224777888854211 12222334567899999999988876653 2222 378999
Q ss_pred EEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEE
Q 017085 142 VHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 221 (377)
Q Consensus 142 i~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~ 221 (377)
+|||++...+...... + ......+.+.++++++||+.+.||++.+++++.++ .+++++++
T Consensus 165 i~~gi~~~~~~~~~~~------~---~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l-----------~~~~l~i~ 224 (357)
T cd03795 165 IPLGLDPARYPRPDAL------E---EAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAAL-----------PDAPLVIV 224 (357)
T ss_pred ecCCCChhhcCCcchh------h---hHhhcCCCCCcEEEEecccccccCHHHHHHHHHhc-----------cCcEEEEE
Confidence 9999998876543211 0 02233456778999999999999999999999865 37999999
Q ss_pred ecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC
Q 017085 222 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 222 G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~ 299 (377)
|+| +....+++.+++++..++|+|+|++ +++.++|+.||++++||....|++|++++|||++|+|||+++.++
T Consensus 225 G~g-----~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~ 299 (357)
T cd03795 225 GEG-----PLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGT 299 (357)
T ss_pred eCC-----hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCC
Confidence 998 4677888888889999999999997 568999999999999996336999999999999999999999999
Q ss_pred cccceec-CcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 017085 300 TTEIVVN-GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMA 358 (377)
Q Consensus 300 ~~e~~~~-~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 358 (377)
..+.+.+ +.+|++++++| +++++++|.++++|++.+.+|++++++.+.++|||+.++
T Consensus 300 ~~~~i~~~~~~g~~~~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 300 GGSYVNLHGVTGLVVPPGD--PAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred chhHHhhCCCceEEeCCCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 9998876 88999999888 999999999999999999999999999999999999874
No 40
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=8.4e-36 Score=270.16 Aligned_cols=332 Identities=25% Similarity=0.265 Sum_probs=255.1
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceE--------EEccchhHHHhhhcccEEEEcCchhhhHHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--------ISAKGQETINTALKADLIVLNTAVAGKWLD 73 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~Div~~~~~~~~~~~~ 73 (377)
+|+++|.+.||+|++++......................... ........+++..+||+||++.........
T Consensus 22 ~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~ 101 (374)
T cd03801 22 ELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAA 101 (374)
T ss_pred HHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHH
Confidence 588999999999999997655322211100000000000000 011233445567899999999876554433
Q ss_pred HHhhcCCCccccceeEEeeeeccccc-----------chhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEE
Q 017085 74 AVLKEDVPRVLPNVLWWIHEMRGHYF-----------KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV 142 (377)
Q Consensus 74 ~~~~~~~~~~~~~~v~~~h~~~~~~~-----------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi 142 (377)
.... . ...|++++.|+...... .......+..+|.+++.|....+.+.+ .++.+..++.++
T Consensus 102 ~~~~--~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~----~~~~~~~~~~~i 173 (374)
T cd03801 102 LAAR--L--LGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELRE----LGGVPPEKITVI 173 (374)
T ss_pred HHHH--h--cCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHh----cCCCCCCcEEEe
Confidence 1111 1 12588999998764332 122334557889999999999888775 444444689999
Q ss_pred EcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEe
Q 017085 143 HLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG 222 (377)
Q Consensus 143 ~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G 222 (377)
|||++...+.... ...+.......+.++++++|++.+.||++.+++++..+.+ +.++++|+++|
T Consensus 174 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~-------~~~~~~l~i~G 237 (374)
T cd03801 174 PNGVDTERFRPAP---------RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRK-------EYPDVRLVIVG 237 (374)
T ss_pred cCcccccccCccc---------hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhh-------hcCCeEEEEEe
Confidence 9999987654321 1223344455677899999999999999999999997754 33789999999
Q ss_pred cCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCc
Q 017085 223 SDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT 300 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~ 300 (377)
++ .....+++.+++++..++|.+.|+. +++.++|+.||++++|+. .+++|++++|||++|+|||+++.++.
T Consensus 238 ~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~~~~~~Ea~~~g~pvI~~~~~~~ 310 (374)
T cd03801 238 DG-----PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSL--YEGFGLVLLEAMAAGLPVVASDVGGI 310 (374)
T ss_pred Cc-----HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecch--hccccchHHHHHHcCCcEEEeCCCCh
Confidence 77 5778888888888999999999998 899999999999999999 89999999999999999999999999
Q ss_pred ccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 301 TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 301 ~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
.+++.++.+|+++++.| +++++++|.+++++++.+.+++.++++.+.++|+|+.+++++.++|+
T Consensus 311 ~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 311 PEVVEDGETGLLVPPGD--PEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTEEVYY 374 (374)
T ss_pred hHHhcCCcceEEeCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhC
Confidence 99999889999999988 99999999999999999999999999889999999999999999873
No 41
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=1e-35 Score=268.64 Aligned_cols=314 Identities=22% Similarity=0.279 Sum_probs=238.1
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc----------------cchhHHHhhhcccEEEEcC
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA----------------KGQETINTALKADLIVLNT 65 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~Div~~~~ 65 (377)
+++++|.+.||+|++++....... .....++.+... ..+..+++..+||+||++.
T Consensus 18 ~l~~~L~~~g~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvv~~~~ 88 (359)
T cd03808 18 PLIKALRAAGYEVHVVAPPGDELE---------ELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLLRKERPDIVHTHT 88 (359)
T ss_pred HHHHHHHhcCCeeEEEecCCCccc---------ccccCCceEEeccccccccChHhHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 588999999999999997654321 111223332211 1233445668999999997
Q ss_pred chhhhHHHHHhhcCCCccccceeEEeeeecccccc---------hhhhccccccceeeeeccchhhHhhhhhhhhhhcc-
Q 017085 66 AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK- 135 (377)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~---------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~- 135 (377)
..+..+....... ...++++++.|+....... ......++.+|.+++.|....+.+.+. ...+
T Consensus 89 ~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~----~~~~~ 161 (359)
T cd03808 89 PKPGILGRLAARL---AGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLALKL----GIIKK 161 (359)
T ss_pred ccchhHHHHHHHH---cCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHHHh----cCCCc
Confidence 6554333322221 1125677777775432211 112334567899999999998877652 2222
Q ss_pred CCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCC
Q 017085 136 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 215 (377)
Q Consensus 136 ~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 215 (377)
..++.+.++|++...+...... .+++.++++++|++.+.||++.+++++..+.+ +.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~-------~~~~ 219 (359)
T cd03808 162 KKTVLIPGSGVDLDRFSPSPEP---------------IPEDDPVFLFVARLLKDKGIDELLEAARILKA-------KGPN 219 (359)
T ss_pred CceEEecCCCCChhhcCccccc---------------cCCCCcEEEEEeccccccCHHHHHHHHHHHHh-------cCCC
Confidence 4567888899988766433210 12567899999999999999999999997654 3488
Q ss_pred eEEEEEecCCCcccHHHHHHHH-HHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEE
Q 017085 216 VHAVIIGSDMNAQTKFESELRN-YVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 294 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~-~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~ 294 (377)
++|+++|.+.... .... .+.+.+..++|.+.|+.+++.++|+.||++++||. .|++|++++|||++|+|||+
T Consensus 220 ~~l~i~G~~~~~~-----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~--~e~~~~~~~Ea~~~G~Pvi~ 292 (359)
T cd03808 220 VRLLLVGDGDEEN-----PAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSY--REGLPRVLLEAMAMGRPVIA 292 (359)
T ss_pred eEEEEEcCCCcch-----hhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCc--ccCcchHHHHHHHcCCCEEE
Confidence 9999999985432 1222 35667777899999999999999999999999999 89999999999999999999
Q ss_pred eCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017085 295 TAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 362 (377)
Q Consensus 295 s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 362 (377)
|+.++..+++.++.+|++++++| +++++++|.+++++++.+.++++++++.+.++|+|+.+++++.
T Consensus 293 s~~~~~~~~i~~~~~g~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 293 TDVPGCREAVIDGVNGFLVPPGD--AEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred ecCCCchhhhhcCcceEEECCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 99999999999889999999888 9999999999999999999999999999999999999999875
No 42
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=9.9e-36 Score=267.64 Aligned_cols=310 Identities=21% Similarity=0.242 Sum_probs=235.1
Q ss_pred cHhhHHHhcCceEEEEEecCCC-cchhHhhhhhhhhcccCc----------eEEEccchhHHHhhhcccEEEEcCchhhh
Q 017085 2 ELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDRGV----------QVISAKGQETINTALKADLIVLNTAVAGK 70 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~Div~~~~~~~~~ 70 (377)
+++++|.+.||+|++++..... .... .........+ ..........+++..+||+||++......
T Consensus 21 ~l~~~L~~~g~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~ 96 (348)
T cd03820 21 NLANALAEKGHEVTIISLDKGEPPFYE----LDPKIKVIDLGDKRDSKLLARFKKLRRLRKLLKNNKPDVVISFLTSLLT 96 (348)
T ss_pred HHHHHHHhCCCeEEEEecCCCCCCccc----cCCccceeecccccccchhccccchHHHHHhhcccCCCEEEEcCchHHH
Confidence 5889999999999999976543 1111 0111100111 11112234555667899999999876222
Q ss_pred HHHHHhhcCCCccccceeEEeeeecccccchh-----hhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcC
Q 017085 71 WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-----YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 145 (377)
Q Consensus 71 ~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ng 145 (377)
++.. ..... ++++.+.|+......... ....++.+|.+++.|...... ....+..++.++|||
T Consensus 97 ~~~~-~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~-------~~~~~~~~~~vi~~~ 164 (348)
T cd03820 97 FLAS-LGLKI----VKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRAL-------YYKKFNKNVVVIPNP 164 (348)
T ss_pred HHHH-Hhhcc----ccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHH-------hhccCCCCeEEecCC
Confidence 2222 11111 478888887654332211 344568899999999988611 223456789999999
Q ss_pred ChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCC
Q 017085 146 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 225 (377)
Q Consensus 146 i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~ 225 (377)
++...+... .+.+.+.++++|++.+.||++.+++++..+.+ ..++++|+|+|.+
T Consensus 165 ~~~~~~~~~------------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~-------~~~~~~l~i~G~~- 218 (348)
T cd03820 165 LPFPPEEPS------------------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAK-------KHPDWKLRIVGDG- 218 (348)
T ss_pred cChhhcccc------------------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHh-------cCCCeEEEEEeCC-
Confidence 988765322 12567889999999999999999999998754 3489999999998
Q ss_pred CcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC-Ccccce
Q 017085 226 NAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIV 304 (377)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~-~~~e~~ 304 (377)
+....+.+.++++++.++|.+.|..+++.++|+.||++++||. .|++|++++|||++|+|||+++.+ +..+++
T Consensus 219 ----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~--~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~ 292 (348)
T cd03820 219 ----PEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSR--FEGFPMVLLEAMAFGLPVISFDCPTGPSEII 292 (348)
T ss_pred ----CCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCcc--ccccCHHHHHHHHcCCCEEEecCCCchHhhh
Confidence 3567778888999999999999998999999999999999999 899999999999999999999965 566777
Q ss_pred ecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017085 305 VNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 362 (377)
Q Consensus 305 ~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 362 (377)
.++.+|+++++.| +++++++|.++++|++.+.++++++++. .++|+|++++++|.
T Consensus 293 ~~~~~g~~~~~~~--~~~~~~~i~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 347 (348)
T cd03820 293 EDGVNGLLVPNGD--VEALAEALLRLMEDEELRKRMGANARES-AERFSIENIIKQWE 347 (348)
T ss_pred ccCcceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHhCHHHHHHHhc
Confidence 7667999999888 9999999999999999999999999664 57799999999885
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.6e-36 Score=271.52 Aligned_cols=323 Identities=21% Similarity=0.212 Sum_probs=236.7
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhh--hh-hhhhc-ccCce--EEEccchhHHHhhhcccEEEEcCchhhhHHHHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIY--SL-EHKMW-DRGVQ--VISAKGQETINTALKADLIVLNTAVAGKWLDAV 75 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~--~~-~~~~~-~~~~~--~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~ 75 (377)
+|+++|.++||+|++++............ .. ..... ..... +.........++..+||+||+++.....+....
T Consensus 22 ~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~ 101 (364)
T cd03814 22 RLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLDAFAPDVVHIATPGPLGLAALR 101 (364)
T ss_pred HHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHHhcCCCEEEEeccchhhHHHHH
Confidence 68999999999999999765421111000 00 00000 00111 111223445556789999999976533222222
Q ss_pred hhcCCCccccceeEEeeeeccccc------------chhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEE
Q 017085 76 LKEDVPRVLPNVLWWIHEMRGHYF------------KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 143 (377)
Q Consensus 76 ~~~~~~~~~~~~v~~~h~~~~~~~------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ 143 (377)
... ....|++.+.|+....+. .......++.+|.+++.|....+.+.. ....++.+++
T Consensus 102 ~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~-------~~~~~~~~~~ 171 (364)
T cd03814 102 AAR---RLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELRA-------RGFRRVRLWP 171 (364)
T ss_pred HHH---HcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhc-------cCCCceeecC
Confidence 211 122578888887543221 112233446889999999988874432 2346799999
Q ss_pred cCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEec
Q 017085 144 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 223 (377)
Q Consensus 144 ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~ 223 (377)
||+|...+.+... ....++.++ +++.++++++|++.+.||++.+++++..+.+ + ++++|+++|.
T Consensus 172 ~g~~~~~~~~~~~-------~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~-------~-~~~~l~i~G~ 235 (364)
T cd03814 172 RGVDTELFHPRRR-------DEALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPLRR-------R-PPVRLVIVGD 235 (364)
T ss_pred CCccccccCcccc-------cHHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHhhh-------c-CCceEEEEeC
Confidence 9999887654322 122344455 4667889999999999999999999997754 3 6899999999
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcc
Q 017085 224 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 301 (377)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~ 301 (377)
+. ..+.++ +..++|.+.|+. +++.++|+.||++++||. .|++|++++|||+||+|||+++.++..
T Consensus 236 ~~-----~~~~~~------~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~--~e~~~~~~lEa~a~g~PvI~~~~~~~~ 302 (364)
T cd03814 236 GP-----ARARLE------ARYPNVHFLGFLDGEELAAAYASADVFVFPSR--TETFGLVVLEAMASGLPVVAPDAGGPA 302 (364)
T ss_pred Cc-----hHHHHh------ccCCcEEEEeccCHHHHHHHHHhCCEEEECcc--cccCCcHHHHHHHcCCCEEEcCCCCch
Confidence 73 333333 345789999964 789999999999999999 899999999999999999999999999
Q ss_pred cceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 302 EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 302 e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
+++.++++|+++++.+ .++++++|.++++|++.+.++++++++.+ ++|+|+.+++++.++|+
T Consensus 303 ~~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 303 DIVTDGENGLLVEPGD--AEAFAAALAALLADPELRRRMAARARAEA-ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred hhhcCCcceEEcCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHhhC
Confidence 9999989999999888 99999999999999999999999999988 77999999999999873
No 44
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.1e-35 Score=269.77 Aligned_cols=311 Identities=17% Similarity=0.197 Sum_probs=222.8
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc------------chhHHH----hhhcccEEEEcC
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------GQETIN----TALKADLIVLNT 65 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~----~~~~~Div~~~~ 65 (377)
+|+++|.++||+|+|++........ .....|++++... .+..+. ...++|+||...
T Consensus 23 ~la~~L~~~g~~v~v~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 94 (363)
T cd04955 23 ELAPRLVARGHEVTVYCRSPYPKQK--------ETEYNGVRLIHIPAPEIGGLGTIIYDILAILHALFVKRDIDHVHALG 94 (363)
T ss_pred HHHHHHHhcCCCEEEEEccCCCCCc--------ccccCCceEEEcCCCCccchhhhHHHHHHHHHHHhccCCeEEEEecC
Confidence 6899999999999999976542211 1112344443211 011111 123444444444
Q ss_pred chhhhHHHHHhhcCCCccccceeEEeeeecccc--cc---hhh-----hccccccceeeeeccchhhHhhhhhhhhhhcc
Q 017085 66 AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--FK---LDY-----VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK 135 (377)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~--~~---~~~-----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 135 (377)
+....+...+.. ...|++++.|+..... +. ..+ ...+..+|.+++.|....+.+.. .+|.+
T Consensus 95 ~~~~~~~~~~~~-----~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~----~~~~~ 165 (363)
T cd04955 95 PAIAPFLPLLRL-----KGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEYLKE----KYGRD 165 (363)
T ss_pred ccHHHHHHHHHh-----cCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHHHHHHH----hcCCC
Confidence 433222221111 1358888898753211 00 111 22346789999999999888764 45533
Q ss_pred CCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCC
Q 017085 136 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 215 (377)
Q Consensus 136 ~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 215 (377)
. .+||||+|...+.. +...++.++++++. .++++||+.+.||++.++++++++. .+
T Consensus 166 --~-~~i~ngv~~~~~~~----------~~~~~~~~~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l~----------~~ 221 (363)
T cd04955 166 --S-TYIPYGADHVVSSE----------EDEILKKYGLEPGR-YYLLVGRIVPENNIDDLIEAFSKSN----------SG 221 (363)
T ss_pred --C-eeeCCCcChhhcch----------hhhhHHhcCCCCCc-EEEEEecccccCCHHHHHHHHHhhc----------cC
Confidence 2 89999999876533 12234456665544 5779999999999999999998652 37
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHH-hcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCC-CccchHHHHHHHcCCc
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG-ECFGRITIEAMAFQLP 291 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~-e~~~~~~~Ea~a~g~P 291 (377)
++|+++|++... ..+.+.+. .++..++|+|+|++ +++.++++.||++++||. . |++|++++|||++|+|
T Consensus 222 ~~l~ivG~~~~~-----~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~--~~e~~~~~~~EAma~G~P 294 (363)
T cd04955 222 KKLVIVGNADHN-----TPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGH--SVGGTNPSLLEAMAYGCP 294 (363)
T ss_pred ceEEEEcCCCCc-----chHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCc--cCCCCChHHHHHHHcCCC
Confidence 999999998432 22333333 56777899999987 678899999999999999 6 9999999999999999
Q ss_pred EEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 292 VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 292 vI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
||+|+.++..|++.+ +|+++++++ . ++++|.+++++++.+.++++++++.+.++|||+.+++++.++|+
T Consensus 295 vI~s~~~~~~e~~~~--~g~~~~~~~--~--l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 295 VLASDNPFNREVLGD--KAIYFKVGD--D--LASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred EEEecCCccceeecC--CeeEecCch--H--HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999999999865 888888765 3 99999999999999999999999999889999999999999884
No 45
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=2.8e-36 Score=270.71 Aligned_cols=301 Identities=16% Similarity=0.137 Sum_probs=218.9
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcc--cCce---EEEccchhHHHhhhcccEEEEcCchhhhHHHHHh
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQ---VISAKGQETINTALKADLIVLNTAVAGKWLDAVL 76 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~ 76 (377)
+|+++|+++||+|++++...+................ .... ......+..+++..+||+||+|+.....+ . .
T Consensus 27 ~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~--~-~ 103 (335)
T cd03802 27 ALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAERALAAGDFDIVHNHSLHLPLP--F-A 103 (335)
T ss_pred HHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh--h-h
Confidence 6899999999999999976653221111000000000 0000 00112334556778999999998765544 1 1
Q ss_pred hcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhh
Q 017085 77 KEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAED 156 (377)
Q Consensus 77 ~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~ 156 (377)
.....|++++.|+........ ........+.+++.|......+.. . .++.+||||+|.+.+.+..
T Consensus 104 ----~~~~~~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~-------~--~~~~vi~ngvd~~~~~~~~- 168 (335)
T cd03802 104 ----RPLPVPVVTTLHGPPDPELLK-LYYAARPDVPFVSISDAQRRPWPP-------L--PWVATVHNGIDLDDYPFRG- 168 (335)
T ss_pred ----cccCCCEEEEecCCCCcccch-HHHhhCcCCeEEEecHHHHhhccc-------c--cccEEecCCcChhhCCCCC-
Confidence 112357899999875443333 333445667788888877765542 1 6799999999988765311
Q ss_pred hhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHH
Q 017085 157 NVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELR 236 (377)
Q Consensus 157 ~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~ 236 (377)
.+...++++||+.+.||++.+++++.+ .+++|+++|.+.. ...+.
T Consensus 169 ------------------~~~~~i~~~Gr~~~~Kg~~~li~~~~~------------~~~~l~i~G~~~~-----~~~~~ 213 (335)
T cd03802 169 ------------------PKGDYLLFLGRISPEKGPHLAIRAARR------------AGIPLKLAGPVSD-----PDYFY 213 (335)
T ss_pred ------------------CCCCEEEEEEeeccccCHHHHHHHHHh------------cCCeEEEEeCCCC-----HHHHH
Confidence 455678999999999999999998653 5799999999842 33444
Q ss_pred HHHHhcC-CCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeee
Q 017085 237 NYVMQKK-IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH 313 (377)
Q Consensus 237 ~~~~~~~-~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~ 313 (377)
....+.. +.++|+|+|++ +++.++|+.+|++++||. +.|+||++++|||+||+|||+|+.|+..|++.++.+|+++
T Consensus 214 ~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~-~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~ 292 (335)
T cd03802 214 REIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPIL-WEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLV 292 (335)
T ss_pred HHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc-ccCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEe
Confidence 4444433 56799999997 567899999999999997 2599999999999999999999999999999998899999
Q ss_pred cCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 314 PVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 314 ~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
++ +++++++|.++.+.. .+++++.+.++|||+.+++++.++|+
T Consensus 293 ~~----~~~l~~~l~~l~~~~------~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 293 DS----VEELAAAVARADRLD------RAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred CC----HHHHHHHHHHHhccH------HHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 74 899999999986543 24567778899999999999999984
No 46
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.4e-35 Score=271.64 Aligned_cols=276 Identities=14% Similarity=0.120 Sum_probs=205.4
Q ss_pred HHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccccc----------ch------------hhhcccc
Q 017085 51 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF----------KL------------DYVKHLP 108 (377)
Q Consensus 51 ~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~----------~~------------~~~~~~~ 108 (377)
.++++.++|+||+++...+.++.. .....|.+++.|+.....+ .+ .....++
T Consensus 98 ~~~~~~~~D~v~~~~~~~~~~~~~------~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 171 (397)
T TIGR03087 98 ALLAAEPVDAIVVFSSAMAQYVTP------HVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYERAIAA 171 (397)
T ss_pred HHHhhCCCCEEEEeccccceeccc------cccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 445568999999997654433221 1112477778887532110 00 0112346
Q ss_pred ccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccc
Q 017085 109 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR 188 (377)
Q Consensus 109 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~ 188 (377)
.+|.++++|+...+.+.+ ..+....++.+||||+|.+.|.+.... ...++.+.++++|+|++.+
T Consensus 172 ~ad~vi~~S~~~~~~l~~----~~~~~~~~v~vipngvd~~~f~~~~~~------------~~~~~~~~~~ilf~G~l~~ 235 (397)
T TIGR03087 172 RFDAATFVSRAEAELFRR----LAPEAAGRITAFPNGVDADFFSPDRDY------------PNPYPPGKRVLVFTGAMDY 235 (397)
T ss_pred hCCeEEEcCHHHHHHHHH----hCCCCCCCeEEeecccchhhcCCCccc------------cCCCCCCCcEEEEEEecCC
Confidence 899999999999887764 233455789999999999877543211 0012245678999999999
Q ss_pred cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEE
Q 017085 189 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLV 268 (377)
Q Consensus 189 ~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l 268 (377)
.||++.++.++..+...+++ +.++++|+|+|+++ . ..+ ++++..++|+|+|+++++..+|+.||+++
T Consensus 236 ~k~~~~l~~~~~~~~~~l~~---~~p~~~l~ivG~g~-----~-~~~----~~l~~~~~V~~~G~v~~~~~~~~~adv~v 302 (397)
T TIGR03087 236 WPNIDAVVWFAERVFPAVRA---RRPAAEFYIVGAKP-----S-PAV----RALAALPGVTVTGSVADVRPYLAHAAVAV 302 (397)
T ss_pred ccCHHHHHHHHHHHHHHHHH---HCCCcEEEEECCCC-----h-HHH----HHhccCCCeEEeeecCCHHHHHHhCCEEE
Confidence 99999998665554444443 34899999999984 1 223 33344568999999999999999999999
Q ss_pred ecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 017085 269 QNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV 348 (377)
Q Consensus 269 ~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 348 (377)
+||.. .||+|++++|||+||+|||+|+.++ ..+...+++|++++ +| +++++++|.++++|++.+.+|++++++++
T Consensus 303 ~Ps~~-~eG~~~~~lEAma~G~PVV~t~~~~-~~i~~~~~~g~lv~-~~--~~~la~ai~~ll~~~~~~~~~~~~ar~~v 377 (397)
T TIGR03087 303 APLRI-ARGIQNKVLEAMAMAKPVVASPEAA-EGIDALPGAELLVA-AD--PADFAAAILALLANPAEREELGQAARRRV 377 (397)
T ss_pred ecccc-cCCcccHHHHHHHcCCCEEecCccc-ccccccCCcceEeC-CC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 99972 5999999999999999999999753 23333456788886 66 99999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHH
Q 017085 349 KEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 349 ~~~f~~~~~~~~~~~~~~ 366 (377)
.++|||+.+++++.++|+
T Consensus 378 ~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 378 LQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 999999999999999885
No 47
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=1.9e-35 Score=273.55 Aligned_cols=273 Identities=18% Similarity=0.275 Sum_probs=212.1
Q ss_pred hhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc---------cchhh---hccccccceeeeeccchhh
Q 017085 55 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FKLDY---VKHLPLVAGAMIDSHVTAE 122 (377)
Q Consensus 55 ~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~---------~~~~~---~~~~~~~~~~~~~s~~~~~ 122 (377)
..++||+|++.+....+. ++.. .+ ..|.+.++|.-.... +...+ ......+|.++++|...++
T Consensus 209 ~~~~di~i~dr~~~~~~~--~~~~-~~--~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~ 283 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQA--VLEN-KG--PAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQ 283 (500)
T ss_pred CCCCCEEEEcCCcccchH--HHhc-CC--CceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHH
Confidence 468999999875532222 2211 11 246777888543111 00111 1334678999999999888
Q ss_pred HhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHH
Q 017085 123 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 202 (377)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l 202 (377)
.+.+.+. .++.+.+++.++|||++...+.+.. ..+...|+++||+.+.||++.+++|+..+
T Consensus 284 ~l~~~~~-~~~~~~~ki~viP~g~~~~~~~~~~------------------~r~~~~il~vGrl~~~Kg~~~li~A~~~l 344 (500)
T TIGR02918 284 ILKNQFK-KYYNIEPRIYTIPVGSLDELQYPEQ------------------ERKPFSIITASRLAKEKHIDWLVKAVVKA 344 (500)
T ss_pred HHHHHhh-hhcCCCCcEEEEcCCCcccccCccc------------------ccCCeEEEEEeccccccCHHHHHHHHHHH
Confidence 7776443 2334457899999998654332110 13457899999999999999999999987
Q ss_pred HHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHH
Q 017085 203 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 282 (377)
Q Consensus 203 ~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~ 282 (377)
.+ +.|+++|+|+|+| +..+.++++++++++.++|.|+|+. ++.++|+.||++++||. .||||+++
T Consensus 345 ~~-------~~p~~~l~i~G~G-----~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~--~Egfgl~~ 409 (500)
T TIGR02918 345 KK-------SVPELTFDIYGEG-----GEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSAST--SEGFGLTL 409 (500)
T ss_pred Hh-------hCCCeEEEEEECc-----hhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCc--cccccHHH
Confidence 65 4589999999998 4678899999999999999999975 89999999999999999 99999999
Q ss_pred HHHHHcCCcEEEeCCC-CcccceecCcceeeecCCC--CC----hhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHH
Q 017085 283 IEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGK--EG----ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 355 (377)
Q Consensus 283 ~Ea~a~g~PvI~s~~~-~~~e~~~~~~~g~~~~~~~--~~----~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 355 (377)
+||||||+|||+++++ |.+|++.++.+|+++++++ .| +++||++|.++++ ++.+.+|++++++.+ ++|||+
T Consensus 410 lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a-~~fs~~ 487 (500)
T TIGR02918 410 MEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIA-EGFLTA 487 (500)
T ss_pred HHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH-HhcCHH
Confidence 9999999999999986 8999999999999998531 12 6789999999995 557899999999965 679999
Q ss_pred HHHHHHHHHHHHH
Q 017085 356 HMAERIAVVLKEV 368 (377)
Q Consensus 356 ~~~~~~~~~~~~~ 368 (377)
.++++|.++++++
T Consensus 488 ~v~~~w~~ll~~~ 500 (500)
T TIGR02918 488 NIIEKWKKLVREV 500 (500)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998763
No 48
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=3.8e-35 Score=266.72 Aligned_cols=328 Identities=22% Similarity=0.301 Sum_probs=243.9
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhc-----cc--CceEEEccchhHHHhhhcccEEEEcCchhhhHHHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW-----DR--GVQVISAKGQETINTALKADLIVLNTAVAGKWLDA 74 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~ 74 (377)
+++++|.++||+|++++................... .. ..............+..+||+||++++........
T Consensus 22 ~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~ 101 (374)
T cd03817 22 RLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIILKELGPDIVHTHTPFSLGLLGL 101 (374)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHHhhcCCCEEEECCchhhhhHHH
Confidence 588999999999999996654322111100000000 00 00001111223345678999999998754333222
Q ss_pred HhhcCCCccccceeEEeeeeccccc--------------c-hhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCe
Q 017085 75 VLKEDVPRVLPNVLWWIHEMRGHYF--------------K-LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDT 139 (377)
Q Consensus 75 ~~~~~~~~~~~~~v~~~h~~~~~~~--------------~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (377)
.... ....|++++.|+....+. . ......++.+|.+++.|....+++.+ ++.+ .++
T Consensus 102 ~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~-----~~~~-~~~ 172 (374)
T cd03817 102 RVAR---KLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIADLLRE-----YGVK-RPI 172 (374)
T ss_pred HHHH---HcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHHHHHHHh-----cCCC-Cce
Confidence 2211 123578888887543211 0 12234457899999999988877763 3433 459
Q ss_pred EEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEE
Q 017085 140 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV 219 (377)
Q Consensus 140 ~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ 219 (377)
.++|||+|...+..... ...++.++++++.++++++|++.+.||++.+++++..+.+ +.++++++
T Consensus 173 ~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~-------~~~~~~l~ 237 (374)
T cd03817 173 EVIPTGIDLDRFEPVDG--------DDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLK-------EEPDVKLV 237 (374)
T ss_pred EEcCCccchhccCccch--------hHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHHH-------hCCCeEEE
Confidence 99999999887654331 2236677777888999999999999999999999997754 33789999
Q ss_pred EEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC
Q 017085 220 IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 220 i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
++|.+ +..+.+++.++++++.++|.++|+. +++..+|+.||++++||. .|++|++++|||++|+|||+++.
T Consensus 238 i~G~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~--~e~~~~~~~Ea~~~g~PvI~~~~ 310 (374)
T cd03817 238 IVGDG-----PEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFAST--TETQGLVLLEAMAAGLPVVAVDA 310 (374)
T ss_pred EEeCC-----chHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccc--ccCcChHHHHHHHcCCcEEEeCC
Confidence 99998 4677888888889999999999987 789999999999999999 89999999999999999999999
Q ss_pred CCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017085 298 GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 367 (377)
Q Consensus 298 ~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 367 (377)
++..+++.++.+|+++++.+ . +++++|.+++++++.++++++++++.+.+.+ +++++.++|++
T Consensus 311 ~~~~~~i~~~~~g~~~~~~~--~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 373 (374)
T cd03817 311 PGLPDLVADGENGFLFPPGD--E-ALAEALLRLLQDPELRRRLSKNAEESAEKFS----FAKKVEKLYEE 373 (374)
T ss_pred CChhhheecCceeEEeCCCC--H-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH----HHHHHHHHHhc
Confidence 99999999999999999876 5 9999999999999999999999999886644 66777777764
No 49
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=8.1e-36 Score=270.99 Aligned_cols=315 Identities=12% Similarity=0.076 Sum_probs=209.9
Q ss_pred CcHhhHHHhcCceEEEEEecCCCcchhHh-hh-------------hhhhhc--ccCceE-EEccchhHHH-hhhcccEEE
Q 017085 1 MELAFLLRGVGTKVNWITIQKPSEEDEVI-YS-------------LEHKMW--DRGVQV-ISAKGQETIN-TALKADLIV 62 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~~~~~~~~~~-~~-------------~~~~~~--~~~~~~-~~~~~~~~~~-~~~~~Div~ 62 (377)
++|++.|.++||+|.++......+..... .. ...... -.+... ........++ +..+|||||
T Consensus 20 ~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pDviH 99 (405)
T PRK10125 20 LDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFGNFNELYRTITRTPGPVVLH 99 (405)
T ss_pred HHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcchHHHHHHHHhhccCCCEEE
Confidence 36899999999999999976543222000 00 000000 000000 1111222223 578999999
Q ss_pred EcCchhh---hH-HHHHh-hcCCCccccceeEEeeeecccc-----------cchh---------h--------------
Q 017085 63 LNTAVAG---KW-LDAVL-KEDVPRVLPNVLWWIHEMRGHY-----------FKLD---------Y-------------- 103 (377)
Q Consensus 63 ~~~~~~~---~~-~~~~~-~~~~~~~~~~~v~~~h~~~~~~-----------~~~~---------~-------------- 103 (377)
+|..... .+ +.... ........+|+|||+|+++... ++.. +
T Consensus 100 lH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~ 179 (405)
T PRK10125 100 FHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAG 179 (405)
T ss_pred EecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCCCccCCCCCccchHHHHHHH
Confidence 9975432 21 11111 0112233469999999987321 0000 0
Q ss_pred -----hccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCe
Q 017085 104 -----VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL 178 (377)
Q Consensus 104 -----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 178 (377)
.......+.++++|.+.++.+.. .++ ..++.+||||+|.+.+...+.. ... ..+++.+
T Consensus 180 k~~~~~~~~~~~~~iV~~S~~l~~~~~~----~~~--~~~i~vI~NGid~~~~~~~~~~-------~~~----~~~~~~~ 242 (405)
T PRK10125 180 KRQLFREMLALGCQFISPSQHVADAFNS----LYG--PGRCRIINNGIDMATEAILAEL-------PPV----RETQGKP 242 (405)
T ss_pred HHHHHHHHhhcCcEEEEcCHHHHHHHHH----HcC--CCCEEEeCCCcCcccccccccc-------ccc----ccCCCCC
Confidence 01112346789999988886553 333 4789999999997532211110 000 0124667
Q ss_pred EEEEeccc--cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--
Q 017085 179 LFAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 254 (377)
Q Consensus 179 ~i~~~G~~--~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-- 254 (377)
+++++|+. .+.||++.+++|+..+. ++++|+++|.+.+.. .+++.++|..
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~----------~~~~L~ivG~g~~~~----------------~~~v~~~g~~~~ 296 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALG----------DKIELHTFGKFSPFT----------------AGNVVNHGFETD 296 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCC----------CCeEEEEEcCCCccc----------------ccceEEecCcCC
Confidence 88999984 47899999999998541 579999999874210 2368888865
Q ss_pred -CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 255 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 255 -~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
.++.++|+.||++|+||. .|+||++++||||||+|||+|++||++|++.++ +|++++++| +++|++.+ +
T Consensus 297 ~~~l~~~y~~aDvfV~pS~--~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d--~~~La~~~-----~ 366 (405)
T PRK10125 297 KRKLMSALNQMDALVFSSR--VDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEE--VLQLAQLS-----K 366 (405)
T ss_pred HHHHHHHHHhCCEEEECCc--cccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCC--HHHHHhcc-----C
Confidence 568999999999999999 999999999999999999999999999999765 999999998 99999854 4
Q ss_pred HHHHHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017085 334 VERRLT----MGKRGYERVKEIFQEHHMAERIAVVLKEV 368 (377)
Q Consensus 334 ~~~~~~----~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 368 (377)
++...+ +..++++.+.++||++.++++|.++|+++
T Consensus 367 ~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 367 PEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 333332 23568888889999999999999999863
No 50
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=2.3e-35 Score=265.59 Aligned_cols=317 Identities=23% Similarity=0.273 Sum_probs=241.3
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhh--hhc----ccCceEEEccchhHHHhhhcccEEEEcCc-hhhhHHHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH--KMW----DRGVQVISAKGQETINTALKADLIVLNTA-VAGKWLDA 74 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~Div~~~~~-~~~~~~~~ 74 (377)
+++++|.+.||+|++++................ ... ..............+++..+||+||++.. .... ..
T Consensus 20 ~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~--~~ 97 (353)
T cd03811 20 NLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKEKPDVVISHLTTTPNV--LA 97 (353)
T ss_pred HHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhcCCCEEEEcCccchhH--HH
Confidence 588999999999999996654322211100000 000 00000111224455667789999999987 3222 22
Q ss_pred HhhcCCCccccceeEEeeeecccccch------hhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChh
Q 017085 75 VLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSK 148 (377)
Q Consensus 75 ~~~~~~~~~~~~~v~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~ 148 (377)
...... ..|++++.|+........ .....+..+|.+++.|....+++.+ .++.+..++.++|||++.
T Consensus 98 ~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~----~~~~~~~~~~vi~~~~~~ 170 (353)
T cd03811 98 LLAARL---GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLK----LLGIPPDKIEVIYNPIDI 170 (353)
T ss_pred HHHhhc---CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHH----hhcCCccccEEecCCcCh
Confidence 222111 368999999886543321 2345668999999999999988876 444456889999999998
Q ss_pred hhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcc
Q 017085 149 ELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ 228 (377)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~ 228 (377)
..+...... . ..++.+.+.++++++|++.+.||++.+++++..+.+ +.++++|+++|.+
T Consensus 171 ~~~~~~~~~-------~---~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~-------~~~~~~l~i~G~~---- 229 (353)
T cd03811 171 EEIRALAEE-------P---LELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRK-------EGPDARLVILGDG---- 229 (353)
T ss_pred hhcCcccch-------h---hhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhh-------cCCCceEEEEcCC----
Confidence 876543211 0 034556778999999999999999999999997754 3368999999998
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCc
Q 017085 229 TKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGT 308 (377)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~ 308 (377)
+..+.+++.++++++.++|.+.|+.+++.++|+.||++++||. .|++|++++|||++|+|||+++.++..|++.++.
T Consensus 230 -~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~--~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~~~ 306 (353)
T cd03811 230 -PLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSR--YEGFPNVLLEAMALGTPVVATDCPGPREILEDGE 306 (353)
T ss_pred -ccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcc--cCCCCcHHHHHHHhCCCEEEcCCCChHHHhcCCC
Confidence 4567778889999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred ceeeecCCCCChhHH---HHHHHHHhhCHHHHHHHHHHHHHHHHHhcC
Q 017085 309 TGLLHPVGKEGITPL---AKNIVKLATHVERRLTMGKRGYERVKEIFQ 353 (377)
Q Consensus 309 ~g~~~~~~~~~~~~l---a~~i~~l~~~~~~~~~~~~~~~~~~~~~f~ 353 (377)
+|+++++.+ .+++ ++++..+.++++.+.+++.++++.+.++|+
T Consensus 307 ~g~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 307 NGLLVPVGD--EAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred ceEEECCCC--HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 999999887 8888 777888888999999999988888888876
No 51
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.7e-34 Score=264.75 Aligned_cols=234 Identities=18% Similarity=0.221 Sum_probs=193.4
Q ss_pred cccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecccc
Q 017085 108 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 187 (377)
Q Consensus 108 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~ 187 (377)
..+|.++++|.++++.+.+ .++. ..++.+++||++...+...+.. .+.+...++++||+.
T Consensus 219 ~~ad~ii~nS~~t~~~l~~----~~~~-~~~i~vvyp~vd~~~~~~~~~~---------------~~~~~~~il~vGR~~ 278 (463)
T PLN02949 219 RCAHLAMVNSSWTKSHIEA----LWRI-PERIKRVYPPCDTSGLQALPLE---------------RSEDPPYIISVAQFR 278 (463)
T ss_pred CCCCEEEECCHHHHHHHHH----HcCC-CCCeEEEcCCCCHHHcccCCcc---------------ccCCCCEEEEEEeee
Confidence 6789999999999888764 3333 3578999999987654211100 013456789999999
Q ss_pred ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc-ccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhc
Q 017085 188 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 264 (377)
Q Consensus 188 ~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~-~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~a 264 (377)
++||++.+|+|++.+.+.+.+ +.++++|+|+|++... +.++.+++++++++++++++|.|+|+. +++.++|+.|
T Consensus 279 ~~Kg~~llI~A~~~l~~~~~~---~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a 355 (463)
T PLN02949 279 PEKAHALQLEAFALALEKLDA---DVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGA 355 (463)
T ss_pred ccCCHHHHHHHHHHHHHhccc---cCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhC
Confidence 999999999999987664433 2378999999997432 234668899999999999999999987 7899999999
Q ss_pred CEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcc-cceec---CcceeeecCCCCChhHHHHHHHHHhh-CHHHHHH
Q 017085 265 DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT-EIVVN---GTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLT 339 (377)
Q Consensus 265 dv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~-e~~~~---~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~~~~ 339 (377)
|++++||. .|+||++++|||++|+|||+++.||.. +++.+ +.+|++++ | +++++++|.++++ +++.+.+
T Consensus 356 ~~~v~~s~--~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~--~~~la~ai~~ll~~~~~~r~~ 429 (463)
T PLN02949 356 VAGLHSMI--DEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--T--VEEYADAILEVLRMRETERLE 429 (463)
T ss_pred cEEEeCCc--cCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC--C--HHHHHHHHHHHHhCCHHHHHH
Confidence 99999998 999999999999999999999998864 77664 56899874 5 9999999999998 6788899
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 017085 340 MGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 371 (377)
Q Consensus 340 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 371 (377)
|++++++.+ ++|||+.+++++.+.+++++..
T Consensus 430 m~~~ar~~~-~~FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 430 IAAAARKRA-NRFSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred HHHHHHHHH-HHcCHHHHHHHHHHHHHHHHhh
Confidence 999999998 5699999999999999988764
No 52
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=2.2e-34 Score=263.72 Aligned_cols=226 Identities=21% Similarity=0.214 Sum_probs=179.5
Q ss_pred cccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecc
Q 017085 106 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 185 (377)
Q Consensus 106 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~ 185 (377)
....+|.++++|.++.+.+.+ .++. ..++.+|+||+|.+.+.+... ....+.++|+++||
T Consensus 186 ~~~~aD~ii~~S~~~~~~~~~----~~~~-~~~~~vi~~gvd~~~~~~~~~---------------~~~~~~~~il~vgr 245 (419)
T cd03806 186 AGSFADVVMVNSTWTRNHIRS----LWKR-NTKPSIVYPPCDVEELLKLPL---------------DEKTRENQILSIAQ 245 (419)
T ss_pred HhhcCCEEEECCHHHHHHHHH----HhCc-CCCcEEEcCCCCHHHhccccc---------------ccccCCcEEEEEEe
Confidence 346889999999999988865 2332 247999999999876643221 01245678999999
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcc-cHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHH
Q 017085 186 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ-TKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 262 (377)
Q Consensus 186 ~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~-~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~ 262 (377)
+.+.||++.+++|+..+.+...+. ..++++|+|+|++...+ .++.++++++++++++.++|+|+|.. +++.++|+
T Consensus 246 ~~~~K~~~~li~A~~~l~~~~~~~--~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~ 323 (419)
T cd03806 246 FRPEKNHPLQLRAFAKLLKRLPEE--IKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELS 323 (419)
T ss_pred ecCCCCHHHHHHHHHHHHHhCccc--ccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHH
Confidence 999999999999999876532110 01359999999875332 24678899999999999999999985 78999999
Q ss_pred hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC-ccccee---cCcceeeecCCCCChhHHHHHHHHHhhCHHHHH
Q 017085 263 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG-TTEIVV---NGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 338 (377)
Q Consensus 263 ~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~-~~e~~~---~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~ 338 (377)
.||++++||. .|+||++++|||+||+|||+++.|| ..+++. ++.+|++++ | +++++++|.+++++++...
T Consensus 324 ~adv~v~~s~--~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d--~~~la~ai~~ll~~~~~~~ 397 (419)
T cd03806 324 TASIGLHTMW--NEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLAS--T--AEEYAEAIEKILSLSEEER 397 (419)
T ss_pred hCeEEEECCc--cCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeC--C--HHHHHHHHHHHHhCCHHHH
Confidence 9999999999 8999999999999999999999876 467887 789999974 5 9999999999999655444
Q ss_pred HHHHHHHHHHHHhcCHHHHHH
Q 017085 339 TMGKRGYERVKEIFQEHHMAE 359 (377)
Q Consensus 339 ~~~~~~~~~~~~~f~~~~~~~ 359 (377)
++..++++.+.++||++.+.+
T Consensus 398 ~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 398 LRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred HHHHHHHHHHHHhhCHHHhcc
Confidence 444555556778899998753
No 53
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=247.16 Aligned_cols=324 Identities=19% Similarity=0.177 Sum_probs=243.0
Q ss_pred CcHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEE------------------ccchhHHHhhhcccEEE
Q 017085 1 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS------------------AKGQETINTALKADLIV 62 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~Div~ 62 (377)
|+|++.|-+.||.|.++|-..+.. ..-....+|.+++. .+.++.+...++..+||
T Consensus 22 y~lSq~li~lghkVvvithayg~r-------~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pllr~i~lrE~I~ivh 94 (426)
T KOG1111|consen 22 YALSQCLIRLGHKVVVITHAYGNR-------VGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLLRPILLRERIEIVH 94 (426)
T ss_pred HHhhcchhhcCCeEEEEeccccCc-------cceeeecCCceEEEEeeeeeecccchhhhhccCcccchhhhhhceEEEe
Confidence 468899999999999999443321 11111123333322 23455566667999999
Q ss_pred EcCchhhhHHHHHhhcCCCccccceeEEeeeeccc------ccchhhhccccccceeeeeccchhhHhhhhhhhhhhccC
Q 017085 63 LNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM 136 (377)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 136 (377)
.|++++...-.+++..+. .+-+.+++-|.+.+. +......-.+...|+++|+|...++...- +-.+++
T Consensus 95 ghs~fS~lahe~l~hart--MGlktVfTdHSlfGfad~~si~~n~ll~~sL~~id~~IcVshtskentvl----r~~L~p 168 (426)
T KOG1111|consen 95 GHSPFSYLAHEALMHART--MGLKTVFTDHSLFGFADIGSILTNKLLPLSLANIDRIICVSHTSKENTVL----RGALAP 168 (426)
T ss_pred cCChHHHHHHHHHHHHHh--cCceEEEeccccccccchhhhhhcceeeeeecCCCcEEEEeecCCCceEE----EeccCH
Confidence 999876654444433221 234789999976542 22233334456889999999988764332 345688
Q ss_pred CCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCe
Q 017085 137 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV 216 (377)
Q Consensus 137 ~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~ 216 (377)
+++.+|||.++...|.|...... ..+...++.++|+-.+||+|.+++++.++++ ++|++
T Consensus 169 ~kvsvIPnAv~~~~f~P~~~~~~--------------S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~-------~~p~v 227 (426)
T KOG1111|consen 169 AKVSVIPNAVVTHTFTPDAADKP--------------SADIITIVVASRLVYRKGIDLLLEIIPSVCD-------KHPEV 227 (426)
T ss_pred hHeeeccceeeccccccCccccC--------------CCCeeEEEEEeeeeeccchHHHHHHHHHHHh-------cCCCe
Confidence 99999999999999887433211 1333788999999999999999999999988 66999
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEE
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 294 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~ 294 (377)
+|+|+|+| +.+..+++..+++.+.++|.++|.+ +++.+.|..-|+|+.||. .|+|+++++|||+||+|||+
T Consensus 228 rfii~GDG-----Pk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSl--TEafc~~ivEAaScGL~VVs 300 (426)
T KOG1111|consen 228 RFIIIGDG-----PKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSL--TEAFCMVIVEAASCGLPVVS 300 (426)
T ss_pred eEEEecCC-----cccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHH--HHHHHHHHHHHHhCCCEEEE
Confidence 99999999 5678889999999999999999987 899999999999999999 99999999999999999999
Q ss_pred eCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Q 017085 295 TAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 372 (377)
Q Consensus 295 s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 372 (377)
+.+||++|++.++ .-++.++ . ++++++++++.++.-... -....+.+.+.|+|+..+++.+++|.++.+.+
T Consensus 301 TrVGGIpeVLP~d-~i~~~~~-~--~~dl~~~v~~ai~~~~~~---p~~~h~~v~~~y~w~dVa~rTekvy~r~~~t~ 371 (426)
T KOG1111|consen 301 TRVGGIPEVLPED-MITLGEP-G--PDDLVGAVEKAITKLRTL---PLEFHDRVKKMYSWKDVAERTEKVYDRAATTS 371 (426)
T ss_pred eecCCccccCCcc-ceeccCC-C--hHHHHHHHHHHHHHhccC---chhHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 9999999999665 2223333 3 788888888777532211 23345567778999999999999999987655
No 54
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=1.4e-35 Score=269.00 Aligned_cols=321 Identities=18% Similarity=0.128 Sum_probs=237.4
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhh-hccc-CceE-----EEccchhHHHhhhcccEEEEcCchhhhHHHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK-MWDR-GVQV-----ISAKGQETINTALKADLIVLNTAVAGKWLDA 74 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-----~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~ 74 (377)
+|+++|.+.||+|++++................. .... .... .............+||+||+++......
T Consensus 23 ~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~--- 99 (365)
T cd03809 23 ELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLLLLLLGLDLLHSPHNTAPLL--- 99 (365)
T ss_pred HHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHHhhhcCCCeeeecccccCcc---
Confidence 6899999999999999976543222111100000 0000 0000 0011222333457899999998664433
Q ss_pred HhhcCCCccccceeEEeeeecccccc------------hhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEE
Q 017085 75 VLKEDVPRVLPNVLWWIHEMRGHYFK------------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV 142 (377)
Q Consensus 75 ~~~~~~~~~~~~~v~~~h~~~~~~~~------------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi 142 (377)
.....|+++++|+....... ......+..+|.+++.|....+.+.+ .++.+..++.++
T Consensus 100 ------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~----~~~~~~~~~~vi 169 (365)
T cd03809 100 ------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATKRDLLR----YLGVPPDKIVVI 169 (365)
T ss_pred ------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHHHHHH----HhCcCHHHEEee
Confidence 12235889999987532211 12334457889999999998888776 455566789999
Q ss_pred EcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEe
Q 017085 143 HLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG 222 (377)
Q Consensus 143 ~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G 222 (377)
|||++...+...... . +.......+.++++++|++.+.||++.+++++..+.+ ..++++|+++|
T Consensus 170 ~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~-------~~~~~~l~i~G 233 (365)
T cd03809 170 PLGVDPRFRPPPAEA--------E-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPA-------KGPDPKLVIVG 233 (365)
T ss_pred ccccCccccCCCchH--------H-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHH-------hcCCCCEEEec
Confidence 999998876443211 1 3334445677899999999999999999999997755 33579999999
Q ss_pred cCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCc
Q 017085 223 SDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT 300 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~ 300 (377)
.+... .......+++.+..++|+++|+. +++.++|+.||++++||. .|++|++++|||++|+|||+++.++.
T Consensus 234 ~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~ 307 (365)
T cd03809 234 KRGWL----NEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSL--YEGFGLPVLEAMACGTPVIASNISSL 307 (365)
T ss_pred CCccc----cHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccch--hccCCCCHHHHhcCCCcEEecCCCCc
Confidence 87543 23333333677888999999998 789999999999999999 89999999999999999999999999
Q ss_pred ccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017085 301 TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 362 (377)
Q Consensus 301 ~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 362 (377)
.|++. .+|+++++.| .++++++|.++++|++.+.++++++++.+ ++|+|+++++++.
T Consensus 308 ~e~~~--~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~sw~~~~~~~~ 364 (365)
T cd03809 308 PEVAG--DAALYFDPLD--PEALAAAIERLLEDPALREELRERGLARA-KRFSWEKTARRTL 364 (365)
T ss_pred cceec--CceeeeCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHh
Confidence 99984 4788888887 99999999999999999999999999644 6799999999876
No 55
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1.1e-34 Score=261.96 Aligned_cols=268 Identities=13% Similarity=0.091 Sum_probs=195.1
Q ss_pred hhHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccc--------hh----hhccc--cccceee
Q 017085 49 QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK--------LD----YVKHL--PLVAGAM 114 (377)
Q Consensus 49 ~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~--------~~----~~~~~--~~~~~~~ 114 (377)
+...++..+||+||++++....|.........+. .+++.+.|.....|.. .. ...++ ..++.++
T Consensus 108 i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~--~~vV~tyHT~y~~Y~~~~~~g~~~~~l~~~~~~~~~r~~~d~vi 185 (462)
T PLN02846 108 ISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKF--RLVIGIVHTNYLEYVKREKNGRVKAFLLKYINSWVVDIYCHKVI 185 (462)
T ss_pred HHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcC--CcEEEEECCChHHHHHHhccchHHHHHHHHHHHHHHHHhcCEEE
Confidence 4566677999999999998776752222222211 2377788874433321 10 11222 2368888
Q ss_pred eeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCC--CeEEEEeccccccchh
Q 017085 115 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE--DLLFAIINSVSRGKGQ 192 (377)
Q Consensus 115 ~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~i~~~G~~~~~Kg~ 192 (377)
++|....+ +.+ .+.+..+|+|.+.|.+.... .++..+ +++ .+.++|+||+.+.||+
T Consensus 186 ~pS~~~~~-l~~-----------~~i~~v~GVd~~~f~~~~~~---------~~~~~~-~~~~~~~~~l~vGRL~~eK~~ 243 (462)
T PLN02846 186 RLSAATQD-YPR-----------SIICNVHGVNPKFLEIGKLK---------LEQQKN-GEQAFTKGAYYIGKMVWSKGY 243 (462)
T ss_pred ccCHHHHH-Hhh-----------CEEecCceechhhcCCCccc---------HhhhcC-CCCCcceEEEEEecCcccCCH
Confidence 88875544 221 23444589999987644211 222222 233 3468899999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 193 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 193 ~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
+.++++++.+.+ +.++++|+|+|+| +..+++++.++++++..++ |.|. .+..++|+.+|+||+||.
T Consensus 244 ~~Li~a~~~l~~-------~~~~~~l~ivGdG-----p~~~~L~~~a~~l~l~~~v-f~G~-~~~~~~~~~~DvFv~pS~ 309 (462)
T PLN02846 244 KELLKLLHKHQK-------ELSGLEVDLYGSG-----EDSDEVKAAAEKLELDVRV-YPGR-DHADPLFHDYKVFLNPST 309 (462)
T ss_pred HHHHHHHHHHHh-------hCCCeEEEEECCC-----ccHHHHHHHHHhcCCcEEE-ECCC-CCHHHHHHhCCEEEECCC
Confidence 999999997754 3378999999999 5788999999999886444 7775 466689999999999999
Q ss_pred CCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhc
Q 017085 273 AWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 352 (377)
Q Consensus 273 ~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f 352 (377)
.|++|++++||||||+|||+++.++ .+++.++.+|+.++ | .+++++++.++++++. ..++..++ ++|
T Consensus 310 --~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~--~--~~~~a~ai~~~l~~~~--~~~~~~a~----~~~ 376 (462)
T PLN02846 310 --TDVVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTYD--D--GKGFVRATLKALAEEP--APLTDAQR----HEL 376 (462)
T ss_pred --cccchHHHHHHHHcCCcEEEecCCC-cceeecCCceEecC--C--HHHHHHHHHHHHccCc--hhHHHHHH----HhC
Confidence 9999999999999999999999997 59998999998884 4 8999999999998542 23333332 479
Q ss_pred CHHHHHHHHHHHHHH
Q 017085 353 QEHHMAERIAVVLKE 367 (377)
Q Consensus 353 ~~~~~~~~~~~~~~~ 367 (377)
||+..++++.++|+-
T Consensus 377 SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 377 SWEAATERFLRVADL 391 (462)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999999963
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=1e-34 Score=263.69 Aligned_cols=331 Identities=26% Similarity=0.336 Sum_probs=252.2
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhh------hhhcccCceE--------EEccchhHHHh--hhcccEEEEcC
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLE------HKMWDRGVQV--------ISAKGQETINT--ALKADLIVLNT 65 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~--------~~~~~~~~~~~--~~~~Div~~~~ 65 (377)
++++.|.+.||+|++++............... .......... .....+..+++ ..+||+||++.
T Consensus 22 ~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dii~~~~ 101 (377)
T cd03798 22 ELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLKRFRPDLIHAHF 101 (377)
T ss_pred HHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHHHHHHHhcccCCCCEEEEec
Confidence 57899999999999999765433221110000 0000000000 00123445556 78999999997
Q ss_pred chhhhHHHHHhhcCCCccccceeEEeeeeccccc------chhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCe
Q 017085 66 AVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDT 139 (377)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 139 (377)
.....++....... ...|++++.|+...... .......+..+|.+++.|....+.+.+ .+.+..++
T Consensus 102 ~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~-----~~~~~~~~ 173 (377)
T cd03798 102 AYPDGFAAALLKRK---LGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKA-----LGIDPEKV 173 (377)
T ss_pred cchHHHHHHHHHHh---cCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHHHHH-----hcCCCCce
Confidence 65444433332211 12578899998754332 223345567899999999999888775 22567899
Q ss_pred EEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEE
Q 017085 140 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV 219 (377)
Q Consensus 140 ~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~ 219 (377)
.++|||+|...+...... .. +..+...+.+.++++|++.+.||++.+++++..+.+ +.++++++
T Consensus 174 ~~i~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~-------~~~~~~l~ 237 (377)
T cd03798 174 TVIPNGVDTERFSPADRA------EA---RKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLK-------KRPDVHLV 237 (377)
T ss_pred EEcCCCcCcccCCCcchH------HH---HhccCCCCceEEEEeccCccccCHHHHHHHHHHHHh-------cCCCeEEE
Confidence 999999998876543211 00 344555678999999999999999999999997754 34789999
Q ss_pred EEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC
Q 017085 220 IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 220 i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
++|.+ +..+.+.+.+++.++.++|.+.|+. +++.++|+.||++++||. .|++|++++|||++|+|||+++.
T Consensus 238 i~g~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~--~~~~~~~~~Ea~~~G~pvI~~~~ 310 (377)
T cd03798 238 IVGDG-----PLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSL--REGFGLVLLEAMACGLPVVATDV 310 (377)
T ss_pred EEcCC-----cchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchh--hccCChHHHHHHhcCCCEEEecC
Confidence 99998 3567788888888888999999987 679999999999999999 89999999999999999999999
Q ss_pred CCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017085 298 GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 367 (377)
Q Consensus 298 ~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 367 (377)
++..+++.++.+|+++++.| +++++++|.+++++++. ++..++++.+.++|+|+.+++++.++|++
T Consensus 311 ~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 311 GGIPEIITDGENGLLVPPGD--PEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVAERLLELYRE 376 (377)
T ss_pred CChHHHhcCCcceeEECCCC--HHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998999999988 99999999999999886 78888999999999999999999999876
No 57
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=2.4e-34 Score=262.91 Aligned_cols=326 Identities=21% Similarity=0.211 Sum_probs=238.9
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc---------------------chhHHH--hhhcc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---------------------GQETIN--TALKA 58 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~--~~~~~ 58 (377)
+++++|.+.||+|++++............. .......++++.... ...... +..+|
T Consensus 22 ~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (394)
T cd03794 22 ELAEELVKRGHEVTVITGSPNYPSGKIYKG-YKREEVDGVRVHRVPLPPYKKNGLLKRLLNYLSFALSALLALLKRRRRP 100 (394)
T ss_pred HHHHHHHhCCceEEEEecCCCccccccccc-ceEEecCCeEEEEEecCCCCccchHHHHHhhhHHHHHHHHHHHhcccCC
Confidence 588999999999999996644322211000 000011233321110 001111 36789
Q ss_pred cEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccccc----------------chhhhccccccceeeeeccchhh
Q 017085 59 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF----------------KLDYVKHLPLVAGAMIDSHVTAE 122 (377)
Q Consensus 59 Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~----------------~~~~~~~~~~~~~~~~~s~~~~~ 122 (377)
|+||++++.............. ...|++++.|+..+... .......+..+|.+++.|....+
T Consensus 101 D~v~~~~~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~ 178 (394)
T cd03794 101 DVIIATSPPLLIALAALLLARL--KGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRADAIVVISPGMRE 178 (394)
T ss_pred CEEEEcCChHHHHHHHHHHHHh--cCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHhcCCEEEEECHHHHH
Confidence 9999998332222221111111 13588999998643211 11122345788999999999988
Q ss_pred HhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHH
Q 017085 123 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 202 (377)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l 202 (377)
++. ..+.+..++.++|||++...+...... .. +.......+.++++++|++.+.||++.+++++..+
T Consensus 179 ~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l 245 (394)
T cd03794 179 YLV-----RRGVPPEKISVIPNGVDLELFKPPPAD-------ES-LRKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALL 245 (394)
T ss_pred HHH-----hcCCCcCceEEcCCCCCHHHcCCccch-------hh-hhhccCCCCcEEEEEecCcccccCHHHHHHHHHHH
Confidence 775 345677899999999998876543221 11 34455557789999999999999999999999977
Q ss_pred HHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCcc--
Q 017085 203 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF-- 278 (377)
Q Consensus 203 ~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~-- 278 (377)
.+ . ++++|+++|.+. ..+.+.+.+...++ ++|.++|+. +++.++|+.||++++||. .+++
T Consensus 246 ~~-------~-~~~~l~i~G~~~-----~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~~~ 309 (394)
T cd03794 246 KD-------R-PDIRFLIVGDGP-----EKEELKELAKALGL-DNVTFLGRVPKEELPELLAAADVGLVPLK--PGPAFE 309 (394)
T ss_pred hh-------c-CCeEEEEeCCcc-----cHHHHHHHHHHcCC-CcEEEeCCCChHHHHHHHHhhCeeEEecc--Cccccc
Confidence 54 2 589999999983 55667776666666 579999976 689999999999999999 5654
Q ss_pred ---chHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHH
Q 017085 279 ---GRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 355 (377)
Q Consensus 279 ---~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 355 (377)
|++++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.++++|++.+.++++++++.+.++|+|+
T Consensus 310 ~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 387 (394)
T cd03794 310 GVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGD--PEALAAAILELLDDPEERAEMGENGRRYVEEKFSRE 387 (394)
T ss_pred ccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCC--HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHH
Confidence 888999999999999999999999998888999999988 999999999999999999999999999999899999
Q ss_pred HHHHHH
Q 017085 356 HMAERI 361 (377)
Q Consensus 356 ~~~~~~ 361 (377)
.+++++
T Consensus 388 ~~~~~~ 393 (394)
T cd03794 388 KLAERL 393 (394)
T ss_pred HHHHhc
Confidence 999886
No 58
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=5.1e-34 Score=258.05 Aligned_cols=315 Identities=18% Similarity=0.155 Sum_probs=228.3
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhc-------ccCce-----E------EEccchhHHHhhhcccEEEE
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW-------DRGVQ-----V------ISAKGQETINTALKADLIVL 63 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~-----~------~~~~~~~~~~~~~~~Div~~ 63 (377)
+|+++|.++||+|++++................... ..... . ........+++..+||+||+
T Consensus 23 ~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~ 102 (359)
T cd03823 23 DLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYDNPAVVAEFARLLEDFRPDVVHF 102 (359)
T ss_pred HHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhccCHHHHHHHHHHHHHcCCCEEEE
Confidence 689999999999999996654322211100000000 00000 0 00113345567789999999
Q ss_pred cCchhhhHH-HHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEE
Q 017085 64 NTAVAGKWL-DAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV 142 (377)
Q Consensus 64 ~~~~~~~~~-~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi 142 (377)
+........ ..... ....|++.++|+...... .........|.+++.|....+.+.+ .+.+..++.++
T Consensus 103 ~~~~~~~~~~~~~~~----~~~~~~i~~~hd~~~~~~--~~~~~~~~~d~ii~~s~~~~~~~~~-----~~~~~~~~~vi 171 (359)
T cd03823 103 HHLQGLGVSILRAAR----DRGIPIVLTLHDYWLICP--RQGLFKKGGDAVIAPSRFLLDRYVA-----NGLFAEKISVI 171 (359)
T ss_pred CCccchHHHHHHHHH----hcCCCEEEEEeeeeeecc--hhhhhccCCCEEEEeCHHHHHHHHH-----cCCCccceEEe
Confidence 985322111 11111 112588999998643221 1111223349999999988887764 33345789999
Q ss_pred EcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEe
Q 017085 143 HLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG 222 (377)
Q Consensus 143 ~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G 222 (377)
+||+|...+..... +.+.++++++++|++.+.||++.+++++..+.+ ++++|+++|
T Consensus 172 ~n~~~~~~~~~~~~---------------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~---------~~~~l~i~G 227 (359)
T cd03823 172 RNGIDLDRAKRPRR---------------APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR---------GDIELVIVG 227 (359)
T ss_pred cCCcChhhcccccc---------------CCCCCceEEEEEecCccccCHHHHHHHHHHHHh---------cCcEEEEEc
Confidence 99999987643221 233677899999999999999999999997743 689999999
Q ss_pred cCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCc
Q 017085 223 SDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT 300 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~ 300 (377)
.+.. ........ +..++|.+.|+. +++.++|+.||++++||.. .|++|++++|||++|+|||+|+.++.
T Consensus 228 ~~~~-----~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~-~e~~~~~~~Ea~a~G~Pvi~~~~~~~ 298 (359)
T cd03823 228 NGLE-----LEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIW-PENFPLVIREALAAGVPVIASDIGGM 298 (359)
T ss_pred Cchh-----hhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcc-cCCCChHHHHHHHCCCCEEECCCCCH
Confidence 9843 22222221 556799999997 8899999999999999972 69999999999999999999999999
Q ss_pred ccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 301 TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 301 ~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
.+++.++.+|++++++| +++++++|.++++|++.+.++++++++... .+.+++++.++|+
T Consensus 299 ~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 358 (359)
T cd03823 299 AELVRDGVNGLLFPPGD--AEDLAAALERLIDDPDLLERLRAGIEPPRS----IEDQAEEYLKLYR 358 (359)
T ss_pred HHHhcCCCcEEEECCCC--HHHHHHHHHHHHhChHHHHHHHHhHHHhhh----HHHHHHHHHHHhh
Confidence 99999988999999988 999999999999999999999999887653 3999999999886
No 59
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=1.5e-34 Score=264.47 Aligned_cols=269 Identities=22% Similarity=0.217 Sum_probs=212.8
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccc--c----cchhhhccccccceeeeeccchhhHhhhhhh
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH--Y----FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 129 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~--~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 129 (377)
.++|++|.+...........+.... ..++++.+.|+.... . +.......+..+|.++++|....+++.+
T Consensus 126 ~~~~v~~sy~~~~~~~~~~~l~~~~--~~~~~i~~~Hg~d~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~--- 200 (407)
T cd04946 126 GQGTVFYSYWLHETAYALALLKKEY--LRKRVISRAHGYDLYEDRYPSGYIPLRRYLLSSLDAVFPCSEQGRNYLQK--- 200 (407)
T ss_pred cCceEEEEecCchHHHHHHHHHHhc--CCceEEEEeccchhhhhhccccchHHHHHHHhcCCEEEECCHHHHHHHHH---
Confidence 4567777765433322222222211 123589999965321 1 1112233457899999999999998876
Q ss_pred hhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhh
Q 017085 130 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 209 (377)
Q Consensus 130 ~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~ 209 (377)
.++...+++.+++||++...+.... ..++.+.++++|++.+.||++.+++++..+.+
T Consensus 201 -~~~~~~~ki~vi~~gv~~~~~~~~~-----------------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~----- 257 (407)
T cd04946 201 -RYPAYKEKIKVSYLGVSDPGIISKP-----------------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAK----- 257 (407)
T ss_pred -HCCCccccEEEEECCcccccccCCC-----------------CCCCCEEEEEeeccccccCHHHHHHHHHHHHH-----
Confidence 5666778899999999876543211 12567899999999999999999999998765
Q ss_pred cccCC--CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHh--cCEEEecCCCCCCccchHHH
Q 017085 210 KLEVP--SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA--IDVLVQNSQAWGECFGRITI 283 (377)
Q Consensus 210 ~~~~~--~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~--adv~l~ps~~~~e~~~~~~~ 283 (377)
+.+ +++++++|+| +..+.+++++++.+..++|+|+|++ +++.++|+. +|++++||. .||+|++++
T Consensus 258 --~~p~~~l~~~iiG~g-----~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~--~Eg~p~~ll 328 (407)
T cd04946 258 --ARPSIKIKWTHIGGG-----PLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSE--SEGLPVSIM 328 (407)
T ss_pred --hCCCceEEEEEEeCc-----hHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCc--cccccHHHH
Confidence 223 5677889988 5678888888888888899999997 578899975 789999999 999999999
Q ss_pred HHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017085 284 EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 362 (377)
Q Consensus 284 Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 362 (377)
|||++|+|||+|+.||..|++.++.+|+++++.+ |+++++++|.++++|++.+.+|+++|++.+.++|+++...+++.
T Consensus 329 EAma~G~PVIas~vgg~~e~i~~~~~G~l~~~~~-~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 329 EAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDP-TPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHcCCCEEeCCCCCcHHHhcCCCcEEEeCCCC-CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 9999999999999999999999998999998752 28999999999999999999999999999999999999998875
No 60
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=2.7e-34 Score=253.29 Aligned_cols=263 Identities=17% Similarity=0.175 Sum_probs=192.3
Q ss_pred cccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhcc--ccccceeeeeccchhhHhhhhhhhhhhc
Q 017085 57 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKH--LPLVAGAMIDSHVTAEYWKNRTRERLRI 134 (377)
Q Consensus 57 ~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 134 (377)
++...+.|+...+++.+. .++..+++++++.|+.. .....+..+ ...+|.++++|+...+.+.+ .++
T Consensus 46 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~e~~~~~--~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~-----~g~ 114 (331)
T PHA01630 46 GYPIYIYYTIFNSMLFWK----GIPHVGKNIVFEVADTD--AISHTALYFFRNQPVDEIVVPSQWSKNAFYT-----SGL 114 (331)
T ss_pred CCceeeehhhhhHHHHHh----hccccCCceEEEEEeec--hhhHHHHHHHhhccCCEEEECCHHHHHHHHH-----cCC
Confidence 555566676554444443 33445568899999842 233333333 36899999999999988764 344
Q ss_pred c-CCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccC
Q 017085 135 K-MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV 213 (377)
Q Consensus 135 ~-~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~ 213 (377)
+ ..++.+||||+|.+.|.+.... ..+.++++++|++.++||++.+++|++.+.+ +.
T Consensus 115 ~~~~~i~vIpNGVd~~~f~~~~~~----------------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~-------~~ 171 (331)
T PHA01630 115 KIPQPIYVIPHNLNPRMFEYKPKE----------------KPHPCVLAILPHSWDRKGGDIVVKIFHELQN-------EG 171 (331)
T ss_pred CCCCCEEEECCCCCHHHcCCCccc----------------cCCCEEEEEeccccccCCHHHHHHHHHHHHh-------hC
Confidence 3 4689999999998877533210 1345777788899999999999999997754 34
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
++++++++|++. ...++ .++.. +......+++..+|+.||++++||. .|+||++++||||||+|||
T Consensus 172 ~~~~llivG~~~-----~~~~l------~~~~~-~~~~v~~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVI 237 (331)
T PHA01630 172 YDFYFLIKSSNM-----LDPRL------FGLNG-VKTPLPDDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVV 237 (331)
T ss_pred CCEEEEEEeCcc-----cchhh------ccccc-eeccCCHHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEE
Confidence 789999999752 11111 12221 1111223789999999999999999 8999999999999999999
Q ss_pred EeCCCCcccceecCcceeeecCC-----------------CCChhHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHhcCH
Q 017085 294 GTAAGGTTEIVVNGTTGLLHPVG-----------------KEGITPLAKNIVKLATHV--ERRLTMGKRGYERVKEIFQE 354 (377)
Q Consensus 294 ~s~~~~~~e~~~~~~~g~~~~~~-----------------~~~~~~la~~i~~l~~~~--~~~~~~~~~~~~~~~~~f~~ 354 (377)
+|+.||..|++.++.+|++++.+ +.+.+++++++.+++.|+ +.+.++..++...+.++|||
T Consensus 238 as~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~ 317 (331)
T PHA01630 238 VTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSY 317 (331)
T ss_pred EeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999998888777532 112788999999988863 44555555555667789999
Q ss_pred HHHHHHHHHHHHH
Q 017085 355 HHMAERIAVVLKE 367 (377)
Q Consensus 355 ~~~~~~~~~~~~~ 367 (377)
++++++++++|++
T Consensus 318 ~~ia~k~~~l~~~ 330 (331)
T PHA01630 318 NAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999974
No 61
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=100.00 E-value=1.7e-33 Score=256.29 Aligned_cols=263 Identities=20% Similarity=0.283 Sum_probs=210.7
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccccc--------c---hhhhccccccceeeeeccchhhHh
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--------K---LDYVKHLPLVAGAMIDSHVTAEYW 124 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~--------~---~~~~~~~~~~~~~~~~s~~~~~~~ 124 (377)
.++|+++++.+....+.. .....+ .+.+.++|+...... . ......+..+|.+++.|....+.+
T Consensus 98 ~~~diii~~~~~~~~~~~--~~~~~~---~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l 172 (372)
T cd04949 98 TKPDVFILDRPTLDGQAL--LNMKKA---AKVVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQDL 172 (372)
T ss_pred CCCCEEEECCccccchhH--HhccCC---ceEEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHHH
Confidence 789999999876554411 111111 246677775432111 1 111233568899999999888877
Q ss_pred hhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHH
Q 017085 125 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLE 204 (377)
Q Consensus 125 ~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~ 204 (377)
.+ .++. ..++.++|||++...+.+... .......++++||+.+.||++.+++++..+.+
T Consensus 173 ~~----~~~~-~~~v~~ip~g~~~~~~~~~~~----------------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~ 231 (372)
T cd04949 173 QK----QFGN-YNPIYTIPVGSIDPLKLPAQF----------------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVK 231 (372)
T ss_pred HH----HhCC-CCceEEEcccccChhhcccch----------------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHH
Confidence 65 3332 234899999999876543210 01455788999999999999999999998765
Q ss_pred HHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHH
Q 017085 205 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE 284 (377)
Q Consensus 205 ~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~E 284 (377)
+.++++|+|+|.|. ....+...+++++++++|.+.|+.+++.++|+.||++++||. .||+|++++|
T Consensus 232 -------~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~--~Eg~~~~~lE 297 (372)
T cd04949 232 -------QVPDATLDIYGYGD-----EEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQ--SEGFGLSLME 297 (372)
T ss_pred -------hCCCcEEEEEEeCc-----hHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEeccc--ccccChHHHH
Confidence 44899999999983 456778888889999999999988999999999999999999 8999999999
Q ss_pred HHHcCCcEEEeCCC-CcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017085 285 AMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 361 (377)
Q Consensus 285 a~a~g~PvI~s~~~-~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 361 (377)
||++|+|||+++.+ |..+++.++.+|++++++| +++++++|.+++++++.+.++++++++. .++|||+.++++|
T Consensus 298 Ama~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d--~~~la~~i~~ll~~~~~~~~~~~~a~~~-~~~~s~~~~~~~w 372 (372)
T cd04949 298 ALSHGLPVISYDVNYGPSEIIEDGENGYLVPKGD--IEALAEAIIELLNDPKLLQKFSEAAYEN-AERYSEENVWEKW 372 (372)
T ss_pred HHhCCCCEEEecCCCCcHHHcccCCCceEeCCCc--HHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHhhHHHHHhcC
Confidence 99999999999987 7899999999999999988 9999999999999999999999999998 5779999998875
No 62
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1e-32 Score=252.46 Aligned_cols=267 Identities=12% Similarity=0.112 Sum_probs=197.6
Q ss_pred chhHHHhhhcccEEEEcCchhhhHH--HHHhhcCCCccccceeEEeeeecccccc--------h----hhhccccc--cc
Q 017085 48 GQETINTALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGHYFK--------L----DYVKHLPL--VA 111 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~h~~~~~~~~--------~----~~~~~~~~--~~ 111 (377)
.+...+...+|||||+++|....|. ........ .|++..+|.....|.. . ..++++.+ ++
T Consensus 425 dI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl----~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD 500 (794)
T PLN02501 425 DTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKF----NHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCH 500 (794)
T ss_pred HHHHHhhccCCCEEEECCchhhccHHHHHHHHHHc----CCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCC
Confidence 4556677889999999998865555 22122222 2678888865543322 1 11123333 68
Q ss_pred eeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccch
Q 017085 112 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKG 191 (377)
Q Consensus 112 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg 191 (377)
.++++|..+.+ + +...+..+ ||||.++|.+... ...+..++++.....++|+||+.+.||
T Consensus 501 ~VIaPS~atq~-L----------~~~vI~nV-nGVDte~F~P~~r--------~~~~r~lgi~~~~kgiLfVGRLa~EKG 560 (794)
T PLN02501 501 KVLRLSAATQD-L----------PKSVICNV-HGVNPKFLKIGEK--------VAEERELGQQAFSKGAYFLGKMVWAKG 560 (794)
T ss_pred EEEcCCHHHHH-h----------cccceeec-ccccccccCCcch--------hHHHHhcCCccccCceEEEEcccccCC
Confidence 89999966653 1 11222222 6999998876532 122345676554556789999999999
Q ss_pred hHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 192 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 192 ~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
++.++++++.+.+ +.++++|+|+|+| +..+.+++++.++++ +|.|+|..++..++|+.+|+||+||
T Consensus 561 ld~LLeAla~L~~-------~~pnvrLvIVGDG-----P~reeLe~la~eLgL--~V~FLG~~dd~~~lyasaDVFVlPS 626 (794)
T PLN02501 561 YRELIDLLAKHKN-------ELDGFNLDVFGNG-----EDAHEVQRAAKRLDL--NLNFLKGRDHADDSLHGYKVFINPS 626 (794)
T ss_pred HHHHHHHHHHHHh-------hCCCeEEEEEcCC-----ccHHHHHHHHHHcCC--EEEecCCCCCHHHHHHhCCEEEECC
Confidence 9999999997754 3378999999999 567889999998887 4999999888889999999999999
Q ss_pred CCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 017085 272 QAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 351 (377)
Q Consensus 272 ~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 351 (377)
. .|+||++++||||||+|||+++.++.. ++.++.+|+++ +| .++++++|.++++++..+..+.. ...
T Consensus 627 ~--sEgFGlVlLEAMA~GlPVVATd~pG~e-~V~~g~nGll~--~D--~EafAeAI~~LLsd~~~rl~~~a------~~~ 693 (794)
T PLN02501 627 I--SDVLCTATAEALAMGKFVVCADHPSNE-FFRSFPNCLTY--KT--SEDFVAKVKEALANEPQPLTPEQ------RYN 693 (794)
T ss_pred C--cccchHHHHHHHHcCCCEEEecCCCCc-eEeecCCeEec--CC--HHHHHHHHHHHHhCchhhhHHHH------Hhh
Confidence 9 999999999999999999999999854 46677788765 45 99999999999998764433321 236
Q ss_pred cCHHHHHHHHHHHH
Q 017085 352 FQEHHMAERIAVVL 365 (377)
Q Consensus 352 f~~~~~~~~~~~~~ 365 (377)
|||+.+++++++.-
T Consensus 694 ~SWeAaadrLle~~ 707 (794)
T PLN02501 694 LSWEAATQRFMEYS 707 (794)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999999864
No 63
>PHA01633 putative glycosyl transferase group 1
Probab=100.00 E-value=3.5e-31 Score=230.47 Aligned_cols=241 Identities=18% Similarity=0.183 Sum_probs=179.5
Q ss_pred cceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhH
Q 017085 85 PNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLR 164 (377)
Q Consensus 85 ~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~ 164 (377)
.+++.+.|+... ...+.+.+.+-+.++++|+.+++.+. +.|++.+ .+|++|+|.+.|.+.... .
T Consensus 71 ~~~~tt~~g~~~---~~~y~~~m~~~~~vIavS~~t~~~L~-----~~G~~~~--i~I~~GVD~~~f~p~~~~------~ 134 (335)
T PHA01633 71 KYFYTTCDGIPN---IEIVNKYLLQDVKFIPNSKFSAENLQ-----EVGLQVD--LPVFHGINFKIVENAEKL------V 134 (335)
T ss_pred CceEEeeCCcCc---hHHHHHHHhcCCEEEeCCHHHHHHHH-----HhCCCCc--eeeeCCCChhhcCccchh------h
Confidence 578888887643 24555666667799999999988876 3455544 357899999877643211 2
Q ss_pred HHHHHHhCCC-CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcC
Q 017085 165 EHVRESLGVR-NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 243 (377)
Q Consensus 165 ~~~r~~~~~~-~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 243 (377)
..+|++++.. ++.++++++||+.++||++.+++|++.+.+...+. ..+++++++|.+ ..++++
T Consensus 135 ~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~---~~~i~l~ivG~~-------------~~~~l~ 198 (335)
T PHA01633 135 PQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDI---AKKIHFFVISHK-------------QFTQLE 198 (335)
T ss_pred HHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCc---cccEEEEEEcHH-------------HHHHcC
Confidence 3456666653 46788999999999999999999999876522100 014677777742 124567
Q ss_pred CCCcEEEec---Cc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec------------
Q 017085 244 IQDRVHFVN---KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN------------ 306 (377)
Q Consensus 244 ~~~~v~~~g---~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~------------ 306 (377)
++++|+|+| .. +++.++|+.||++|+||. .||||++++|||+||+|||+|+.++++|++.+
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 788999995 32 679999999999999999 99999999999999999999999998886431
Q ss_pred ------CcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017085 307 ------GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 363 (377)
Q Consensus 307 ------~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 363 (377)
.+.||.++..| +++|+++|.++++..+ ....+.++++.+ ++|+|++++++|++
T Consensus 277 ~~~~~~~g~g~~~~~~d--~~~la~ai~~~~~~~~-~~~~~~~~~~~a-~~f~~~~~~~~~~~ 335 (335)
T PHA01633 277 EYYDKEHGQKWKIHKFQ--IEDMANAIILAFELQD-REERSMKLKELA-KKYDIRNLYTRFLE 335 (335)
T ss_pred HhcCcccCceeeecCCC--HHHHHHHHHHHHhccC-hhhhhHHHHHHH-HhcCHHHHHHHhhC
Confidence 23467777777 9999999999865322 223366777655 56999999999864
No 64
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.3e-31 Score=242.55 Aligned_cols=245 Identities=13% Similarity=0.103 Sum_probs=175.6
Q ss_pred hhhcccEEEEcCchhhh--HHHHHhhcCCCccccceeEEeeeeccccc--------------chhhhccccccceeeeec
Q 017085 54 TALKADLIVLNTAVAGK--WLDAVLKEDVPRVLPNVLWWIHEMRGHYF--------------KLDYVKHLPLVAGAMIDS 117 (377)
Q Consensus 54 ~~~~~Div~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~h~~~~~~~--------------~~~~~~~~~~~~~~~~~s 117 (377)
+..+||+||+|++.+.. +...+... . ...|++.+.|+.+.... .......++.+|.+++.|
T Consensus 97 ~~~~~DvV~~~~~~~~~~~~~~~~~~~-~--~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~S 173 (371)
T PLN02275 97 KIPRPDVFLVQNPPSVPTLAVVKLACW-L--RRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLCVT 173 (371)
T ss_pred hCCCCCEEEEeCCCCcHHHHHHHHHHH-H--hCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEECC
Confidence 45799999998754321 11111111 1 12478888897631110 111223457789999999
Q ss_pred cchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHH
Q 017085 118 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 197 (377)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~ 197 (377)
+...+.+.+ .+|++ +.+||||. .+.|.+.... ..+. ++...+++++||+.+.||++.+++
T Consensus 174 ~~~~~~l~~----~~g~~---i~vi~n~~-~~~f~~~~~~-----------~~~~-~~~~~~i~~~grl~~~k~~~~li~ 233 (371)
T PLN02275 174 KAMQHELDQ----NWGIR---ATVLYDQP-PEFFRPASLE-----------IRLR-PNRPALVVSSTSWTPDEDFGILLE 233 (371)
T ss_pred HHHHHHHHH----hcCCC---eEEECCCC-HHHcCcCCch-----------hccc-CCCcEEEEEeCceeccCCHHHHHH
Confidence 999888764 34543 88999985 3444322110 0011 134467788999999999999999
Q ss_pred HHHHHHHHHhhhc----------ccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec-Cc--CCHHHHHHhc
Q 017085 198 SFYESLELIKEKK----------LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-KT--LTVAPYLAAI 264 (377)
Q Consensus 198 a~~~l~~~l~~~~----------~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g-~~--~~~~~~~~~a 264 (377)
|+..+...+.... .+.++++|+|+|+| +..++++++++++++++ ++|.+ +. +++..+|+.|
T Consensus 234 a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G-----~~~~~l~~~~~~~~l~~-v~~~~~~~~~~~~~~~l~~a 307 (371)
T PLN02275 234 AAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG-----PQKAMYEEKISRLNLRH-VAFRTMWLEAEDYPLLLGSA 307 (371)
T ss_pred HHHHHHhhhhhccccccccccccccCCCeEEEEEeCC-----CCHHHHHHHHHHcCCCc-eEEEcCCCCHHHHHHHHHhC
Confidence 9987643221100 02378999999999 56789999999999975 88766 33 8999999999
Q ss_pred CEEEecCCC-CCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 265 DVLVQNSQA-WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 265 dv~l~ps~~-~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
|++++|+.. +.|++|++++||||||+|||+++.|+.+|++.++.+|++++ + +++|+++|.+++
T Consensus 308 Dv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~--~--~~~la~~i~~l~ 371 (371)
T PLN02275 308 DLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFS--S--SSELADQLLELL 371 (371)
T ss_pred CEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEEC--C--HHHHHHHHHHhC
Confidence 999986431 25889999999999999999999999999999999999997 4 899999998764
No 65
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.97 E-value=4.6e-30 Score=231.76 Aligned_cols=199 Identities=23% Similarity=0.286 Sum_probs=163.0
Q ss_pred cccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecc
Q 017085 106 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 185 (377)
Q Consensus 106 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~ 185 (377)
.+..+|.++++|..+++.+.+ .++ .+..+++||+|.+.+.+.. .....++++|+
T Consensus 150 ~~~~~d~ii~~S~~~~~~~~~----~~~---~~~~vi~~~~d~~~~~~~~-------------------~~~~~il~~G~ 203 (351)
T cd03804 150 SAARVDYFIANSRFVARRIKK----YYG---RDATVIYPPVDTDRFTPAE-------------------EKEDYYLSVGR 203 (351)
T ss_pred HhcCCCEEEECCHHHHHHHHH----HhC---CCcEEECCCCCHhhcCcCC-------------------CCCCEEEEEEc
Confidence 347899999999999988865 333 3468999999987664321 23346889999
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHh
Q 017085 186 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA 263 (377)
Q Consensus 186 ~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ 263 (377)
+.+.||++.+++++..+ + ++|+|+|+| +..+.+++ +..++|+|+|++ +++.++|+.
T Consensus 204 ~~~~K~~~~li~a~~~~-----------~-~~l~ivG~g-----~~~~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~ 261 (351)
T cd03804 204 LVPYKRIDLAIEAFNKL-----------G-KRLVVIGDG-----PELDRLRA-----KAGPNVTFLGRVSDEELRDLYAR 261 (351)
T ss_pred CccccChHHHHHHHHHC-----------C-CcEEEEECC-----hhHHHHHh-----hcCCCEEEecCCCHHHHHHHHHh
Confidence 99999999999999854 5 899999998 34455544 446799999998 559999999
Q ss_pred cCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHH
Q 017085 264 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 343 (377)
Q Consensus 264 adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~ 343 (377)
||++++||. |++|++++|||+||+|||+++.++..|++.++.+|++++++| +++++++|.+++++++ .++++
T Consensus 262 ad~~v~ps~---e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~--~~~la~~i~~l~~~~~---~~~~~ 333 (351)
T cd03804 262 ARAFLFPAE---EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQT--VESLAAAVERFEKNED---FDPQA 333 (351)
T ss_pred CCEEEECCc---CCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCC--HHHHHHHHHHHHhCcc---cCHHH
Confidence 999999985 999999999999999999999999999999999999999888 9999999999999884 23334
Q ss_pred HHHHHHHhcCHHHHHHHH
Q 017085 344 GYERVKEIFQEHHMAERI 361 (377)
Q Consensus 344 ~~~~~~~~f~~~~~~~~~ 361 (377)
+++.+ ++|+|+++.+++
T Consensus 334 ~~~~~-~~~~~~~~~~~~ 350 (351)
T cd03804 334 IRAHA-ERFSESRFREKI 350 (351)
T ss_pred HHHHH-HhcCHHHHHHHh
Confidence 44444 459999998875
No 66
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.97 E-value=6.3e-29 Score=229.57 Aligned_cols=329 Identities=15% Similarity=0.131 Sum_probs=219.2
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceE--EEcc---chhHHHhhhcccEEEEcCchhhhHHHHHh
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV--ISAK---GQETINTALKADLIVLNTAVAGKWLDAVL 76 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~Div~~~~~~~~~~~~~~~ 76 (377)
.|++.|++.++++.++.+...+...... ......++.+ .+.. ....+++..+||+||++... .|...+.
T Consensus 68 ~l~~~l~~~~~~~~i~~t~~t~~~~~~~----~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~--~~~~~l~ 141 (425)
T PRK05749 68 PLIRALRKRYPDLPILVTTMTPTGSERA----QALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETE--LWPNLIA 141 (425)
T ss_pred HHHHHHHHhCCCCcEEEeCCCccHHHHH----HHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecc--hhHHHHH
Confidence 4788998888775554332222222211 1111223333 3322 44566788999999988432 1222111
Q ss_pred hcCCCccccceeEEeeeecccc------cchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhh
Q 017085 77 KEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKEL 150 (377)
Q Consensus 77 ~~~~~~~~~~~v~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~ 150 (377)
.... ...|++.+.|.+.... +....+..++.+|.+++.|+...+.+. .+|++.+ +.+++|+ +.+.
T Consensus 142 ~~~~--~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~-----~~g~~~~-i~vi~n~-~~d~ 212 (425)
T PRK05749 142 ELKR--RGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFL-----ALGAKNE-VTVTGNL-KFDI 212 (425)
T ss_pred HHHH--CCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCCC-cEecccc-cccC
Confidence 1111 1235555444322111 222334556788999999999988876 4566666 8899885 2322
Q ss_pred HHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccH
Q 017085 151 MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK 230 (377)
Q Consensus 151 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~ 230 (377)
+..... ......+|+.++ ++.++++++|+. .|+.+.+++|+..+.+ +.++++|+|+|+| +
T Consensus 213 ~~~~~~----~~~~~~~r~~~~--~~~~vil~~~~~--~~~~~~ll~A~~~l~~-------~~~~~~liivG~g-----~ 272 (425)
T PRK05749 213 EVPPEL----AARAATLRRQLA--PNRPVWIAASTH--EGEEELVLDAHRALLK-------QFPNLLLILVPRH-----P 272 (425)
T ss_pred CCChhh----HHHHHHHHHHhc--CCCcEEEEeCCC--chHHHHHHHHHHHHHH-------hCCCcEEEEcCCC-----h
Confidence 211110 112345677776 355677787764 5889999999997754 3489999999998 3
Q ss_pred HH-HHHHHHHHhcCCCC-------------cEEEecCcCCHHHHHHhcCEEEe-cCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 231 FE-SELRNYVMQKKIQD-------------RVHFVNKTLTVAPYLAAIDVLVQ-NSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 231 ~~-~~l~~~~~~~~~~~-------------~v~~~g~~~~~~~~~~~adv~l~-ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
.+ +++++.++++|+.. .|.+.+..+++..+|+.||++++ +|. .|++|.+++|||+||+|||++
T Consensus 273 ~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~--~e~~g~~~lEAma~G~PVI~g 350 (425)
T PRK05749 273 ERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL--VKRGGHNPLEPAAFGVPVISG 350 (425)
T ss_pred hhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc--CCCCCCCHHHHHHhCCCEEEC
Confidence 43 67899999888752 34444445689999999999655 666 789999999999999999998
Q ss_pred CC-CCcccceecC-cceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Q 017085 296 AA-GGTTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 372 (377)
Q Consensus 296 ~~-~~~~e~~~~~-~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 372 (377)
+. ++..++.... .+|+++.++| +++|+++|.++++|++.+.+|++++++.+.++ ....+++.+.+.+.+++.
T Consensus 351 ~~~~~~~e~~~~~~~~g~~~~~~d--~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~---~~~~~~~~~~l~~~l~~~ 424 (425)
T PRK05749 351 PHTFNFKEIFERLLQAGAAIQVED--AEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN---QGALQRTLQLLEPYLPPL 424 (425)
T ss_pred CCccCHHHHHHHHHHCCCeEEECC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHhcccC
Confidence 64 5566665442 4688888877 99999999999999999999999999988764 467788888887776554
No 67
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.97 E-value=3.4e-28 Score=222.63 Aligned_cols=289 Identities=17% Similarity=0.142 Sum_probs=206.3
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-------cchhhhccccccceeeeeccchhhHhhhhh
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 128 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 128 (377)
..-|+|++|+..... +...++...+. .++.+..|-.++.. +.....+-+-.+|.+-..+...+..|....
T Consensus 126 ~~~d~vwvhDYhl~l-~p~~lr~~~~~--~~igfFlHipfP~~e~f~~lp~r~~il~gll~~dligF~t~~~~~~Fl~~~ 202 (456)
T TIGR02400 126 QPGDIVWVHDYHLML-LPAMLRELGVQ--NKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAYDLVGFQTYDDARNFLSAV 202 (456)
T ss_pred CCCCEEEEecchhhH-HHHHHHhhCCC--CeEEEEEeCCCCChHHHhhCCcHHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 345899999865332 33333333433 47888888654322 122233334577888888887777776655
Q ss_pred hhhhhc-----------cCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHH
Q 017085 129 RERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 197 (377)
Q Consensus 129 ~~~~~~-----------~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~ 197 (377)
.+.+|. ...++.++|||+|++.|.+.............+|+++ .+.++|+++||+++.||++.+++
T Consensus 203 ~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~vIl~VgRLd~~KGi~~ll~ 279 (456)
T TIGR02400 203 SRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL---KGRKLIIGVDRLDYSKGLPERLL 279 (456)
T ss_pred HHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc---CCCeEEEEccccccccCHHHHHH
Confidence 544442 3346889999999999876543322222234567666 36688999999999999999999
Q ss_pred HHHHHHHHHhhhcccCCC----eEEEEEecCCCcccHHHHHHHHHHHhc--------CCCC--cEEEec-C--cCCHHHH
Q 017085 198 SFYESLELIKEKKLEVPS----VHAVIIGSDMNAQTKFESELRNYVMQK--------KIQD--RVHFVN-K--TLTVAPY 260 (377)
Q Consensus 198 a~~~l~~~l~~~~~~~~~----~~l~i~G~~~~~~~~~~~~l~~~~~~~--------~~~~--~v~~~g-~--~~~~~~~ 260 (377)
|++.+++ ++|+ +.|+++|....++.+.+.++++.++++ +..+ .+++++ . .+++.++
T Consensus 280 A~~~ll~-------~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~al 352 (456)
T TIGR02400 280 AFERFLE-------EHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMAL 352 (456)
T ss_pred HHHHHHH-------hCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHH
Confidence 9998765 2343 668877643222223445555555443 1111 145554 3 3889999
Q ss_pred HHhcCEEEecCCCCCCccchHHHHHHHcCCc----EEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-CHH
Q 017085 261 LAAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVE 335 (377)
Q Consensus 261 ~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~P----vI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~ 335 (377)
|+.||++++||. .||||++++||||||+| +|+|+.+|..+.+. +|+++++.| ++++|++|.++++ +++
T Consensus 353 y~aaDv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d--~~~lA~aI~~aL~~~~~ 425 (456)
T TIGR02400 353 YRAADVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYD--IDGMADAIARALTMPLE 425 (456)
T ss_pred HHhCcEEEECcc--ccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCC--HHHHHHHHHHHHcCCHH
Confidence 999999999999 99999999999999999 99999888888773 789999998 9999999999998 677
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 336 RRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 336 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
++.++.+.+++++. +||+..+++++.+-+
T Consensus 426 er~~r~~~~~~~v~-~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 426 EREERHRAMMDKLR-KNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHHh-hCCHHHHHHHHHHHh
Confidence 88888999999875 499999999988643
No 68
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.97 E-value=1.1e-28 Score=227.98 Aligned_cols=292 Identities=16% Similarity=0.103 Sum_probs=201.3
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc--c-----chhhhccccccceeeeeccchhhHhhhhh
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--F-----KLDYVKHLPLVAGAMIDSHVTAEYWKNRT 128 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~--~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 128 (377)
...|+|++|+...... ...++...+. .++++..|-.++.. + .......+-.+|.+...+......+.+..
T Consensus 130 ~~~d~iwihDyhl~ll-p~~lr~~~~~--~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~ 206 (460)
T cd03788 130 RPGDLVWVHDYHLLLL-PQMLRERGPD--ARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCC 206 (460)
T ss_pred CCCCEEEEeChhhhHH-HHHHHhhCCC--CeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 3579999998753332 2333333332 47888899654322 1 11222333456777777765555544433
Q ss_pred hhhhhc------------cCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHH
Q 017085 129 RERLRI------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 196 (377)
Q Consensus 129 ~~~~~~------------~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll 196 (377)
.+.++. ...++.++|||+|++.|.+..... ..+..+++..+..++.++|+++||+.+.||++.++
T Consensus 207 ~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~---~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll 283 (460)
T cd03788 207 SRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASP---EVQERAAELRERLGGRKLIVGVDRLDYSKGIPERL 283 (460)
T ss_pred HHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCc---hhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHH
Confidence 222221 224689999999999887653221 11233444455567788999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCeEEEEEecCCCcc----cHHHHHHHHHHHhcCCC------CcEEEe-cC--cCCHHHHHHh
Q 017085 197 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQKKIQ------DRVHFV-NK--TLTVAPYLAA 263 (377)
Q Consensus 197 ~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~----~~~~~~l~~~~~~~~~~------~~v~~~-g~--~~~~~~~~~~ 263 (377)
+|++.+++...+. ..+++|+++|.+..++ ..+.+++++++.+++.. ..|+++ |. .+++.++|+.
T Consensus 284 ~A~~~ll~~~p~~---~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~ 360 (460)
T cd03788 284 LAFERLLERYPEW---RGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRA 360 (460)
T ss_pred HHHHHHHHhChhh---cCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHh
Confidence 9999876522110 0136788887643221 12444555555443321 235544 54 3889999999
Q ss_pred cCEEEecCCCCCCccchHHHHHHHcCCc----EEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhC-HHHHH
Q 017085 264 IDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRL 338 (377)
Q Consensus 264 adv~l~ps~~~~e~~~~~~~Ea~a~g~P----vI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~-~~~~~ 338 (377)
||++++||. .||||++++|||+||+| ||+|+.+|..+. +.+|+++++.| +++++++|.+++++ ++++.
T Consensus 361 aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d--~~~la~ai~~~l~~~~~e~~ 433 (460)
T cd03788 361 ADVALVTPL--RDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYD--IDEVADAIHRALTMPLEERR 433 (460)
T ss_pred ccEEEeCcc--ccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCC--HHHHHHHHHHHHcCCHHHHH
Confidence 999999999 99999999999999999 999998887776 45899999998 99999999999984 57788
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017085 339 TMGKRGYERVKEIFQEHHMAERIAVV 364 (377)
Q Consensus 339 ~~~~~~~~~~~~~f~~~~~~~~~~~~ 364 (377)
.++.++++.+ ++|+++.+++++..-
T Consensus 434 ~~~~~~~~~v-~~~~~~~w~~~~l~~ 458 (460)
T cd03788 434 ERHRKLREYV-RTHDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHh
Confidence 8888888887 569999999988753
No 69
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.97 E-value=8.9e-29 Score=219.93 Aligned_cols=305 Identities=32% Similarity=0.376 Sum_probs=235.0
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchh------hh--------ccccccceeeeeccchh
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD------YV--------KHLPLVAGAMIDSHVTA 121 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~------~~--------~~~~~~~~~~~~s~~~~ 121 (377)
.+.|.|++....++.++...+.. |..++.++++.|.....++++. +. ......+++++.+..++
T Consensus 144 ~~~d~~i~d~~~~~~~l~~~~~~--p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~ 221 (495)
T KOG0853|consen 144 EKVDPIIEDFVSACVPLLKQLSG--PDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTK 221 (495)
T ss_pred hhhceeecchHHHHHHHHHHhcC--CcccceeEEeccchHHHhccccCccceeehhhhhhhhhhhhhccceEecchhhhh
Confidence 67899999888777777777665 7788899999999876665542 11 11236788999999998
Q ss_pred hHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHH
Q 017085 122 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYE 201 (377)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~ 201 (377)
..+...+. .+...++.+.+.++|.+.+.+.. .....+.+...|...+....+..+..+.++.|.||++.+++++..
T Consensus 222 ~~f~~~~~---~L~~~d~~~~y~ei~~s~~~~~~-~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~ 297 (495)
T KOG0853|consen 222 RQFKATFV---SLSNSDITSTYPEIDGSWFTYGQ-YESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTL 297 (495)
T ss_pred hhhhhhhh---hcCCCCcceeeccccchhccccc-cccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHh
Confidence 88877644 24445588899899877665311 111223345556667777778888899999999999999999998
Q ss_pred HHHHHhhhcccCCCeEEEEEecC-----CCcccHHHHHHHHHHHhcCC-CCcEEEecCcCCHHHHHHhcC--EEEecCCC
Q 017085 202 SLELIKEKKLEVPSVHAVIIGSD-----MNAQTKFESELRNYVMQKKI-QDRVHFVNKTLTVAPYLAAID--VLVQNSQA 273 (377)
Q Consensus 202 l~~~l~~~~~~~~~~~l~i~G~~-----~~~~~~~~~~l~~~~~~~~~-~~~v~~~g~~~~~~~~~~~ad--v~l~ps~~ 273 (377)
+...+.+. ..++.++.++|+. ...+-.+.+++.++++++++ .+.+.|+....+...|...+| +.+..-.
T Consensus 298 ~~~~i~~~--~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa- 374 (495)
T KOG0853|consen 298 LHDSIPEP--SISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPA- 374 (495)
T ss_pred hhcccCCC--CCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCC-
Confidence 87755442 3467888899843 22333578899999999988 467777777655555555555 4444333
Q ss_pred CCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcC
Q 017085 274 WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 353 (377)
Q Consensus 274 ~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~ 353 (377)
.|.||++++|||+||+|||+++.||..|++.++.+|++++++......+++++.++..|++++.+|++++++++.+.|+
T Consensus 375 -~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs 453 (495)
T KOG0853|consen 375 -NEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFS 453 (495)
T ss_pred -CCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999964222379999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 017085 354 EHHMAERIAVVLKEVLK 370 (377)
Q Consensus 354 ~~~~~~~~~~~~~~~~~ 370 (377)
|..+.+++.++..+...
T Consensus 454 ~~~~~~ri~~~~~~~~~ 470 (495)
T KOG0853|consen 454 WQHYSERIASVLGKYLQ 470 (495)
T ss_pred HHHHHHHHHHHhHhcCC
Confidence 99999999998876543
No 70
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.97 E-value=4.2e-28 Score=220.05 Aligned_cols=303 Identities=17% Similarity=0.154 Sum_probs=200.3
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccccc--c------------------------h---hhhcc
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--K------------------------L---DYVKH 106 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~--~------------------------~---~~~~~ 106 (377)
.++|++|+|.-.++..+..+..... ..+.|+|.|....... . . .-+..
T Consensus 147 ~~~dViH~HeWm~g~a~~~lK~~~~---~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~a 223 (590)
T cd03793 147 EPAVVAHFHEWQAGVGLPLLRKRKV---DVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAA 223 (590)
T ss_pred CCCeEEEEcchhHhHHHHHHHHhCC---CCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHH
Confidence 5799999998665544444332222 2479999996542211 0 0 01123
Q ss_pred ccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhh----hh-----hhhHHHHHHHhCCCCCC
Q 017085 107 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNV----AK-----RVLREHVRESLGVRNED 177 (377)
Q Consensus 107 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~----~~-----~~~~~~~r~~~~~~~~~ 177 (377)
...+|.++++|+.++..... .++.++++ |+|||+|...|....... .. ...+..++..+++++++
T Consensus 224 a~~Ad~fttVS~it~~E~~~----Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~ 297 (590)
T cd03793 224 AHCAHVFTTVSEITAYEAEH----LLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDK 297 (590)
T ss_pred HhhCCEEEECChHHHHHHHH----HhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCC
Confidence 35779999999999888776 66777775 999999999886543110 00 01133457778888777
Q ss_pred eEEEE-eccccc-cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc-------ccHHHHHHHH-----------
Q 017085 178 LLFAI-INSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-------QTKFESELRN----------- 237 (377)
Q Consensus 178 ~~i~~-~G~~~~-~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~-------~~~~~~~l~~----------- 237 (377)
++++| +||+.. +||+|.+|+|+.+|...++..+.+..=+-|+++-..... ..+..+++++
T Consensus 298 tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~ 377 (590)
T cd03793 298 TLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGK 377 (590)
T ss_pred eEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 77777 799988 999999999999999888875311112334444332110 0011111111
Q ss_pred --------------------------------------------------------HHHhcCCC----C--cEEEecC--
Q 017085 238 --------------------------------------------------------YVMQKKIQ----D--RVHFVNK-- 253 (377)
Q Consensus 238 --------------------------------------------------------~~~~~~~~----~--~v~~~g~-- 253 (377)
.+++.++- + +|+|.+.
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L 457 (590)
T cd03793 378 RLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFL 457 (590)
T ss_pred hhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEccccc
Confidence 12222221 1 2555542
Q ss_pred -----c--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCc----ccceecC-cceeeecCCC----
Q 017085 254 -----T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT----TEIVVNG-TTGLLHPVGK---- 317 (377)
Q Consensus 254 -----~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~----~e~~~~~-~~g~~~~~~~---- 317 (377)
. .+..++|+.||++|+||+ +||||++++|||+||+|||+|+.+|+ .|++.++ ..|+.+.+.+
T Consensus 458 ~~~~~~~g~~y~E~~~g~dl~v~PS~--yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~ 535 (590)
T cd03793 458 SSTNPLLGLDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSP 535 (590)
T ss_pred CCCCCcCCcchHHHhhhceEEEeccc--cCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccch
Confidence 1 457899999999999999 99999999999999999999999988 5555443 3566665211
Q ss_pred -CChhHHHHHHHHHhhCHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHh
Q 017085 318 -EGITPLAKNIVKLATHVERRLTMGKRGY-ERVKEIFQEHHMAERIAVVLKEVLK 370 (377)
Q Consensus 318 -~~~~~la~~i~~l~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~ 370 (377)
+++++++++|.++++. +.++.+..+++ +...++|+|++.++.|.+.|..++.
T Consensus 536 ~e~v~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 536 DESVQQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 1378899999998854 44555555443 3455789999999999999998775
No 71
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.97 E-value=4e-28 Score=219.41 Aligned_cols=304 Identities=14% Similarity=0.070 Sum_probs=210.2
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc------------------------chhHHHhhhc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------------------GQETINTALK 57 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~ 57 (377)
+|++.|.++||||++++...+... ......|+++.... ....++++.+
T Consensus 20 ~la~~L~~~g~ev~vv~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~~~ 91 (357)
T PRK00726 20 ALAEELKKRGWEVLYLGTARGMEA--------RLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLKGVLQARKILKRFK 91 (357)
T ss_pred HHHHHHHhCCCEEEEEECCCchhh--------hccccCCCcEEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999987542111 11111243332211 1234456788
Q ss_pred ccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCC
Q 017085 58 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 137 (377)
Q Consensus 58 ~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 137 (377)
||+||+|+.........+.+. . ..|++++.|+.... ...+..++.+|.+++.+... +. . .+..
T Consensus 92 pDvv~~~~~~~~~~~~~~~~~-~---~~p~v~~~~~~~~~---~~~r~~~~~~d~ii~~~~~~---~~-----~--~~~~ 154 (357)
T PRK00726 92 PDVVVGFGGYVSGPGGLAARL-L---GIPLVIHEQNAVPG---LANKLLARFAKKVATAFPGA---FP-----E--FFKP 154 (357)
T ss_pred CCEEEECCCcchhHHHHHHHH-c---CCCEEEEcCCCCcc---HHHHHHHHHhchheECchhh---hh-----c--cCCC
Confidence 999999985544332222221 1 24677666643221 12222346778888776632 11 1 4668
Q ss_pred CeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHH-HHHHHHHHHHhhhcccCCCe
Q 017085 138 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL-HSFYESLELIKEKKLEVPSV 216 (377)
Q Consensus 138 ~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll-~a~~~l~~~l~~~~~~~~~~ 216 (377)
++.+++||++.+.+.... .+++++++++.++++++|+..+.|+...++ +++.++.+ . + .
T Consensus 155 ~i~vi~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~-------~-~-~ 214 (357)
T PRK00726 155 KAVVTGNPVREEILALAA-----------PPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPE-------A-L-Q 214 (357)
T ss_pred CEEEECCCCChHhhcccc-----------hhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhh-------C-c-E
Confidence 999999999987653211 123567767778888899888888876555 88876532 1 2 5
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++++|++. .+.+.+..+ +++. |.+.|+++++.++|+.||+++.+|- +++++|||++|+|+|++.
T Consensus 215 ~~~~~G~g~------~~~~~~~~~-~~~~--v~~~g~~~~~~~~~~~~d~~i~~~g------~~~~~Ea~~~g~Pvv~~~ 279 (357)
T PRK00726 215 VIHQTGKGD------LEEVRAAYA-AGIN--AEVVPFIDDMAAAYAAADLVICRAG------ASTVAELAAAGLPAILVP 279 (357)
T ss_pred EEEEcCCCc------HHHHHHHhh-cCCc--EEEeehHhhHHHHHHhCCEEEECCC------HHHHHHHHHhCCCEEEec
Confidence 677889983 345555555 6664 9999999999999999999997652 689999999999999987
Q ss_pred CCC--------cccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 297 AGG--------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 297 ~~~--------~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
.++ ..+.+.+.++|+++++.|.++++++++|.++++|++.+++|++++++.. +.++.+.+++.+.++.+
T Consensus 280 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 280 LPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG-KPDAAERLADLIEELAR 356 (357)
T ss_pred CCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHhh
Confidence 642 2355667789999987654589999999999999999999999999875 66999999988887754
No 72
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.96 E-value=9.4e-28 Score=216.68 Aligned_cols=297 Identities=15% Similarity=0.107 Sum_probs=203.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEE--Ec----------------------cchhHHHhhhc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SA----------------------KGQETINTALK 57 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------------~~~~~~~~~~~ 57 (377)
+|++.|.++||||+++|........ .....|+++. +. .....++++.+
T Consensus 18 ~la~~l~~~G~ev~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 89 (350)
T cd03785 18 ALAEELRERGAEVLFLGTKRGLEAR--------LVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQARKILKKFK 89 (350)
T ss_pred HHHHHHHhCCCEEEEEECCCcchhh--------cccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999875432111 0111222221 11 11234456789
Q ss_pred ccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCC
Q 017085 58 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 137 (377)
Q Consensus 58 ~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 137 (377)
||+||+|+..++.....+.... ..|++.+.|.... ..........+|.+++.+....++ .+..
T Consensus 90 pDvI~~~~~~~~~~~~~~a~~~----~~p~v~~~~~~~~---~~~~~~~~~~~~~vi~~s~~~~~~----------~~~~ 152 (350)
T cd03785 90 PDVVVGFGGYVSGPVGLAAKLL----GIPLVIHEQNAVP---GLANRLLARFADRVALSFPETAKY----------FPKD 152 (350)
T ss_pred CCEEEECCCCcchHHHHHHHHh----CCCEEEEcCCCCc---cHHHHHHHHhhCEEEEcchhhhhc----------CCCC
Confidence 9999999865443322222111 1355555554322 111222345689999988877654 2457
Q ss_pred CeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHH-HHHHHHHHHHHHhhhcccCCCe
Q 017085 138 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSV 216 (377)
Q Consensus 138 ~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~ 216 (377)
++.+++||++.+.+...+ . ++.++++++.++++++|+....|+... +++++..+.+ +++
T Consensus 153 ~~~~i~n~v~~~~~~~~~----------~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~---------~~~ 212 (350)
T cd03785 153 KAVVTGNPVREEILALDR----------E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR---------KRL 212 (350)
T ss_pred cEEEECCCCchHHhhhhh----------h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc---------cCe
Confidence 899999999987664321 1 677888888888888887766777655 4577765532 456
Q ss_pred EE-EEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 217 HA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 217 ~l-~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
.+ +++|++ ..+++++.++++ .++|++.|+++++.++|+.||+++.+|- +++++|||++|+|||++
T Consensus 213 ~~~~i~G~g------~~~~l~~~~~~~--~~~v~~~g~~~~~~~~l~~ad~~v~~sg------~~t~~Eam~~G~Pvv~~ 278 (350)
T cd03785 213 QVIHQTGKG------DLEEVKKAYEEL--GVNYEVFPFIDDMAAAYAAADLVISRAG------ASTVAELAALGLPAILI 278 (350)
T ss_pred EEEEEcCCc------cHHHHHHHHhcc--CCCeEEeehhhhHHHHHHhcCEEEECCC------HhHHHHHHHhCCCEEEe
Confidence 64 467776 346677777665 4689999999999999999999997552 68899999999999998
Q ss_pred CCCC--------cccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHH
Q 017085 296 AAGG--------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMA 358 (377)
Q Consensus 296 ~~~~--------~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 358 (377)
+.++ ..+.+.++++|++++.++.|+++++++|..+++|++.+++|+.++++.+ +.+..++++
T Consensus 279 ~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~i~ 348 (350)
T cd03785 279 PLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLA-RPDAAERIA 348 (350)
T ss_pred ecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 7543 2456666779999997621299999999999999999999999998865 346666655
No 73
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.96 E-value=1.2e-27 Score=217.35 Aligned_cols=275 Identities=13% Similarity=0.070 Sum_probs=195.0
Q ss_pred hhHHHhhhcccEEEEcCchh----hhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHh
Q 017085 49 QETINTALKADLIVLNTAVA----GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYW 124 (377)
Q Consensus 49 ~~~~~~~~~~Div~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 124 (377)
+..++++.+||+||++++.. ..++..+.... ....|++.+++++. .....+..+.+|.+++.|+...+.+
T Consensus 92 l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~--~~~~p~~~~~tD~~----~~~~~w~~~~~d~~~~~s~~~~~~l 165 (382)
T PLN02605 92 VAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKEL--GKKIPFTTVVTDLG----TCHPTWFHKGVTRCFCPSEEVAKRA 165 (382)
T ss_pred HHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhcc--CCCCCEEEEECCCC----CcCcccccCCCCEEEECCHHHHHHH
Confidence 44567778999999988762 22222221111 12246666666552 1223444578999999998887776
Q ss_pred hhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHH
Q 017085 125 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLE 204 (377)
Q Consensus 125 ~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~ 204 (377)
. ..|++++++.+++++++.+++.... .+..+|+++|++++.++++++|+....|++..+++++..+..
T Consensus 166 ~-----~~g~~~~ki~v~g~~v~~~f~~~~~-------~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~ 233 (382)
T PLN02605 166 L-----KRGLEPSQIRVYGLPIRPSFARAVR-------PKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLY 233 (382)
T ss_pred H-----HcCCCHHHEEEECcccCHhhccCCC-------CHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhc
Confidence 5 5578889999999999876543221 245689999999999999999999889999999998875421
Q ss_pred HHhhhcccCCCeE-EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHH
Q 017085 205 LIKEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 283 (377)
Q Consensus 205 ~l~~~~~~~~~~~-l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~ 283 (377)
..+. ..++.+ ++++|.+. ...+++++. ....+|+|+|+++++.++|++||+++.++ .|++++
T Consensus 234 ~~~~---~~~~~~~~vi~G~~~----~~~~~L~~~----~~~~~v~~~G~~~~~~~l~~aaDv~V~~~------g~~ti~ 296 (382)
T PLN02605 234 DKNL---GKPIGQVVVICGRNK----KLQSKLESR----DWKIPVKVRGFVTNMEEWMGACDCIITKA------GPGTIA 296 (382)
T ss_pred cccc---cCCCceEEEEECCCH----HHHHHHHhh----cccCCeEEEeccccHHHHHHhCCEEEECC------CcchHH
Confidence 0000 124565 56777662 234445443 22357999999999999999999999754 378999
Q ss_pred HHHHcCCcEEEeCC------CCcccceecCcceeeecCCCCChhHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhcCHHH
Q 017085 284 EAMAFQLPVLGTAA------GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHH 356 (377)
Q Consensus 284 Ea~a~g~PvI~s~~------~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~-~~~~~~~~~~~~~~~~~~f~~~~ 356 (377)
|||+||+|+|+++. ++. +.+.+++.|+.+ .+ +++++++|.+++++ ++.+++|++++++.. ...+.+.
T Consensus 297 EAma~g~PvI~~~~~pgqe~gn~-~~i~~~g~g~~~--~~--~~~la~~i~~ll~~~~~~~~~m~~~~~~~~-~~~a~~~ 370 (382)
T PLN02605 297 EALIRGLPIILNGYIPGQEEGNV-PYVVDNGFGAFS--ES--PKEIARIVAEWFGDKSDELEAMSENALKLA-RPEAVFD 370 (382)
T ss_pred HHHHcCCCEEEecCCCccchhhH-HHHHhCCceeec--CC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCchHHH
Confidence 99999999999984 333 334455577664 45 99999999999998 999999999998865 4466777
Q ss_pred HHHHHHHH
Q 017085 357 MAERIAVV 364 (377)
Q Consensus 357 ~~~~~~~~ 364 (377)
+++.+.+.
T Consensus 371 i~~~l~~~ 378 (382)
T PLN02605 371 IVHDLHEL 378 (382)
T ss_pred HHHHHHHH
Confidence 77666554
No 74
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.96 E-value=1.9e-27 Score=214.47 Aligned_cols=295 Identities=14% Similarity=0.104 Sum_probs=196.8
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc------------------------cchhHHHhhhc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------------------------KGQETINTALK 57 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 57 (377)
+|+++|.++||||++++...... . ......|+++... .....++++.+
T Consensus 19 ~La~~L~~~g~eV~vv~~~~~~~-~-------~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~i~~~~ 90 (348)
T TIGR01133 19 AVAEELIKRGVEVLWLGTKRGLE-K-------RLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAVFQARRILKKFK 90 (348)
T ss_pred HHHHHHHhCCCEEEEEeCCCcch-h-------cccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999998543211 0 0011123333211 12334557789
Q ss_pred ccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCC
Q 017085 58 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 137 (377)
Q Consensus 58 ~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 137 (377)
||+||+|...+..+...+... . ..|++.+.+... .........+.+|.+++.++...+++
T Consensus 91 pDvVi~~~~~~~~~~~~~~~~-~---~~p~v~~~~~~~---~~~~~~~~~~~~d~ii~~~~~~~~~~------------- 150 (348)
T TIGR01133 91 PDAVIGFGGYVSGPAGLAAKL-L---GIPLFHHEQNAV---PGLTNKLLSRFAKKVLISFPGAKDHF------------- 150 (348)
T ss_pred CCEEEEcCCcccHHHHHHHHH-c---CCCEEEECCCCC---ccHHHHHHHHHhCeeEECchhHhhcC-------------
Confidence 999999976654333222211 1 124444333221 12222334567899999998776543
Q ss_pred CeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHH-HHHHHHHHHHHHhhhcccCCCe
Q 017085 138 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSV 216 (377)
Q Consensus 138 ~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~ 216 (377)
+..+++||++...+.+.. .++.++++++.++++++|+....|+... ++++++.+.+ .++
T Consensus 151 ~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~---------~~~ 210 (348)
T TIGR01133 151 EAVLVGNPVRQEIRSLPV-----------PRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAE---------KGI 210 (348)
T ss_pred CceEEcCCcCHHHhcccc-----------hhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh---------cCc
Confidence 237999999876553211 1235678788889999988777888655 4577765532 345
Q ss_pred EEEE-EecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 217 HAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 217 ~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
++++ +|++ ..+.+++.++++++.+.+.|. .. ++.++|+.||+++.+| | |++++|||++|+|+|++
T Consensus 211 ~~~~~~g~~------~~~~l~~~~~~~~l~~~v~~~-~~-~~~~~l~~ad~~v~~~-----g-~~~l~Ea~~~g~Pvv~~ 276 (348)
T TIGR01133 211 QIVHQTGKN------DLEKVKNVYQELGIEAIVTFI-DE-NMAAAYAAADLVISRA-----G-ASTVAELAAAGVPAILI 276 (348)
T ss_pred EEEEECCcc------hHHHHHHHHhhCCceEEecCc-cc-CHHHHHHhCCEEEECC-----C-hhHHHHHHHcCCCEEEe
Confidence 6644 4444 236788888888876556666 33 8999999999999754 2 78999999999999999
Q ss_pred CCCC-------cccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 017085 296 AAGG-------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 359 (377)
Q Consensus 296 ~~~~-------~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 359 (377)
+.++ ..+++.++++|++++++|.++++++++|.++++|++.+.+|++++++++ +....+++++
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 346 (348)
T TIGR01133 277 PYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLA-KPDAAKRIAE 346 (348)
T ss_pred eCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC-CccHHHHHHh
Confidence 8654 2357778889999987644499999999999999999999999998755 3345555443
No 75
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.96 E-value=1.2e-27 Score=193.45 Aligned_cols=169 Identities=29% Similarity=0.497 Sum_probs=152.1
Q ss_pred HHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcC
Q 017085 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 243 (377)
Q Consensus 164 ~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 243 (377)
++..+...+.+.++++|+++|++.+.||++.+++++..+.+.. .+++.++|+|.+ ++...+...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~------~~~~~l~i~G~~-----~~~~~~~~~~~~~~ 70 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKK------NPNYKLVIVGDG-----EYKKELKNLIEKLN 70 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHH------HTTEEEEEESHC-----CHHHHHHHHHHHTT
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhc------CCCeEEEEEccc-----cccccccccccccc
Confidence 5677888889899999999999999999999999999876431 278999999966 47788999999999
Q ss_pred CCCcEEEecCcC--CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChh
Q 017085 244 IQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGIT 321 (377)
Q Consensus 244 ~~~~v~~~g~~~--~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~ 321 (377)
+.++++|+|... ++.++|+.||++++||. .|++|++++|||++|+|||+++.++..+++.++.+|+++++.+ ++
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~--~~ 146 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPND--IE 146 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTS--HH
T ss_pred ccccccccccccccccccccccceecccccc--ccccccccccccccccceeeccccCCceeeccccceEEeCCCC--HH
Confidence 999999999985 89999999999999999 8999999999999999999999999999999999999999988 99
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH
Q 017085 322 PLAKNIVKLATHVERRLTMGKRGYER 347 (377)
Q Consensus 322 ~la~~i~~l~~~~~~~~~~~~~~~~~ 347 (377)
+++++|.+++++++.+..|+++++++
T Consensus 147 ~l~~~i~~~l~~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 147 ELADAIEKLLNDPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999874
No 76
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=2.2e-26 Score=209.65 Aligned_cols=272 Identities=10% Similarity=0.044 Sum_probs=193.6
Q ss_pred chhHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhh
Q 017085 48 GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNR 127 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 127 (377)
....++++.+||+||++++...... +.... ....|++...++.. ....+..+.+|.+++.|+...+.+.
T Consensus 95 ~l~~~l~~~~pD~Vi~~~~~~~~~~--~~~~~--~~~ip~~~~~td~~-----~~~~~~~~~ad~i~~~s~~~~~~l~-- 163 (380)
T PRK13609 95 RLKLLLQAEKPDIVINTFPIIAVPE--LKKQT--GISIPTYNVLTDFC-----LHKIWVHREVDRYFVATDHVKKVLV-- 163 (380)
T ss_pred HHHHHHHHhCcCEEEEcChHHHHHH--HHHhc--CCCCCeEEEeCCCC-----CCcccccCCCCEEEECCHHHHHHHH--
Confidence 4456667899999999877644222 22111 11245554444321 2223445789999999998887776
Q ss_pred hhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCC-eEEEEeccccccchhHHHHHHHHHHHHHH
Q 017085 128 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSVSRGKGQDLFLHSFYESLELI 206 (377)
Q Consensus 128 ~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l 206 (377)
+.|++.+++.+++++++..+.... .+...+++++++++. +++++.|++...|+++.+++++.+
T Consensus 164 ---~~gi~~~ki~v~G~p~~~~f~~~~--------~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~----- 227 (380)
T PRK13609 164 ---DIGVPPEQVVETGIPIRSSFELKI--------NPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLMS----- 227 (380)
T ss_pred ---HcCCChhHEEEECcccChHHcCcC--------CHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhh-----
Confidence 457788888888777654332111 123578889998665 456667888888999988887652
Q ss_pred hhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHH
Q 017085 207 KEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 286 (377)
Q Consensus 207 ~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~ 286 (377)
.++++++++|++.+ +..+.+++.+++.+ ++|+|+|+++++.++|+.||+++. ++.|++++|||
T Consensus 228 ------~~~~~~viv~G~~~---~~~~~l~~~~~~~~--~~v~~~g~~~~~~~l~~~aD~~v~------~~gg~t~~EA~ 290 (380)
T PRK13609 228 ------VPDLQVVVVCGKNE---ALKQSLEDLQETNP--DALKVFGYVENIDELFRVTSCMIT------KPGGITLSEAA 290 (380)
T ss_pred ------CCCcEEEEEeCCCH---HHHHHHHHHHhcCC--CcEEEEechhhHHHHHHhccEEEe------CCCchHHHHHH
Confidence 16789887754211 35677887777665 689999999999999999999884 23488999999
Q ss_pred HcCCcEEEeC-CCCcc----cceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017085 287 AFQLPVLGTA-AGGTT----EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 361 (377)
Q Consensus 287 a~g~PvI~s~-~~~~~----e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 361 (377)
++|+|||+++ .+|.. +++. ++|+.+...+ +++++++|.++++|++.+.+|++++++.. +.++++.+++.+
T Consensus 291 a~g~PvI~~~~~~g~~~~n~~~~~--~~G~~~~~~~--~~~l~~~i~~ll~~~~~~~~m~~~~~~~~-~~~s~~~i~~~i 365 (380)
T PRK13609 291 ALGVPVILYKPVPGQEKENAMYFE--RKGAAVVIRD--DEEVFAKTEALLQDDMKLLQMKEAMKSLY-LPEPADHIVDDI 365 (380)
T ss_pred HhCCCEEECCCCCCcchHHHHHHH--hCCcEEEECC--HHHHHHHHHHHHCCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 9999999986 45421 2332 2455555556 99999999999999999999999998755 558999999999
Q ss_pred HHHHHHH
Q 017085 362 AVVLKEV 368 (377)
Q Consensus 362 ~~~~~~~ 368 (377)
.+.+...
T Consensus 366 ~~~~~~~ 372 (380)
T PRK13609 366 LAENHVE 372 (380)
T ss_pred HHhhhhh
Confidence 9887653
No 77
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.95 E-value=7.2e-26 Score=219.64 Aligned_cols=293 Identities=16% Similarity=0.161 Sum_probs=209.5
Q ss_pred ccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-------cchhhhccccccceeeeeccchhhHhhhhhhh
Q 017085 58 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRE 130 (377)
Q Consensus 58 ~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 130 (377)
-|+|++|+.... .+...++...+. .++.+.+|-.++.+ ......+-+-.+|.|-..+...+..|.+...+
T Consensus 148 ~d~vWvhDYhL~-llp~~lR~~~~~--~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~r 224 (797)
T PLN03063 148 GDVVWCHDYHLM-FLPQYLKEYNNK--MKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACTR 224 (797)
T ss_pred CCEEEEecchhh-hHHHHHHHhCCC--CcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHHH
Confidence 489999985433 233334434444 37888888765432 11223333456777888777777766665444
Q ss_pred hhhcc-----------CCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHH
Q 017085 131 RLRIK-----------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSF 199 (377)
Q Consensus 131 ~~~~~-----------~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~ 199 (377)
-++.. ..++.++|||||++.|.........+.....+++.++ ++.+|+++||+++.||++.+++|+
T Consensus 225 ~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~Af 301 (797)
T PLN03063 225 ILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GRKVILGVDRLDMIKGIPQKYLAF 301 (797)
T ss_pred HhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEecccccccCHHHHHHHH
Confidence 44332 2468899999999988654332221222234555553 567889999999999999999999
Q ss_pred HHHHHHHhhhcccCCCe----EEEEEecCCCcccHHHHHHHHHHHhcC--CCCc--------EEEec-Cc--CCHHHHHH
Q 017085 200 YESLELIKEKKLEVPSV----HAVIIGSDMNAQTKFESELRNYVMQKK--IQDR--------VHFVN-KT--LTVAPYLA 262 (377)
Q Consensus 200 ~~l~~~l~~~~~~~~~~----~l~i~G~~~~~~~~~~~~l~~~~~~~~--~~~~--------v~~~g-~~--~~~~~~~~ 262 (377)
+.+++ ++|++ .|+.++.....+.+.++++++.++++. +..+ |++++ .. +++.++|+
T Consensus 302 e~lL~-------~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~ 374 (797)
T PLN03063 302 EKFLE-------ENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYA 374 (797)
T ss_pred HHHHH-------hCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHH
Confidence 98766 33554 455444322222245566777666653 2221 33333 22 78999999
Q ss_pred hcCEEEecCCCCCCccchHHHHHHHcCCc----EEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-CHHHH
Q 017085 263 AIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERR 337 (377)
Q Consensus 263 ~adv~l~ps~~~~e~~~~~~~Ea~a~g~P----vI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~~ 337 (377)
.||++|+||. .||||++++||||||+| +|.|..+|..+.+ +..|+++++.| ++++|++|.++++ +++++
T Consensus 375 ~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D--~~~lA~AI~~aL~m~~~er 448 (797)
T PLN03063 375 ITDVMLVTSL--RDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWN--ITEVSSAIKEALNMSDEER 448 (797)
T ss_pred hCCEEEeCcc--ccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCC--HHHHHHHHHHHHhCCHHHH
Confidence 9999999999 99999999999999999 9999999988876 55799999998 9999999999999 88888
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 017085 338 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 370 (377)
Q Consensus 338 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 370 (377)
++..+..++++. +++|..+++.+.+.++++..
T Consensus 449 ~~r~~~~~~~v~-~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 449 ETRHRHNFQYVK-THSAQKWADDFMSELNDIIV 480 (797)
T ss_pred HHHHHHHHHhhh-hCCHHHHHHHHHHHHHHHhh
Confidence 888888888774 59999999999998887764
No 78
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.9e-25 Score=202.05 Aligned_cols=295 Identities=18% Similarity=0.142 Sum_probs=222.5
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-cc-------------------------hhhhccccc
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-FK-------------------------LDYVKHLPL 109 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-~~-------------------------~~~~~~~~~ 109 (377)
..|||||+|+-.++.....+..........|.++|+|...... +. ...+..+..
T Consensus 129 ~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ 208 (487)
T COG0297 129 WLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYY 208 (487)
T ss_pred CCCCEEEeecHHHHHHHHHHhhcccccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhhee
Confidence 3699999998665544333333221233468999999753211 10 011223357
Q ss_pred cceeeeeccchhhHhhhhhhhhhh--------ccCCCeEEEEcCChhhhHHHhhhhh-----------hhhhhHHHHHHH
Q 017085 110 VAGAMIDSHVTAEYWKNRTRERLR--------IKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRES 170 (377)
Q Consensus 110 ~~~~~~~s~~~~~~~~~~~~~~~~--------~~~~~~~vi~ngi~~~~~~~~~~~~-----------~~~~~~~~~r~~ 170 (377)
+|.+.++|...+..+... .+| .-..++.-|-||+|.+.+.+..... .+..++..+++.
T Consensus 209 ad~vttVSptYa~Ei~t~---~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~ 285 (487)
T COG0297 209 ADAVTTVSPTYAGEIYTP---EYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQER 285 (487)
T ss_pred ccEEEEECHHHHHhhccc---cccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHH
Confidence 889999999888766522 221 1236788999999998776654321 255667888999
Q ss_pred hCCCC--CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcE
Q 017085 171 LGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 248 (377)
Q Consensus 171 ~~~~~--~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v 248 (377)
+|++. +.+.+.++||+..+||+|.+++++..+.+ ..+++++.|.|.+ .+.+.+..+++.+.. ...
T Consensus 286 ~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~---------~~~~~vilG~gd~---~le~~~~~la~~~~~-~~~ 352 (487)
T COG0297 286 LGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLE---------QGWQLVLLGTGDP---ELEEALRALASRHPG-RVL 352 (487)
T ss_pred hCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHH---------hCceEEEEecCcH---HHHHHHHHHHHhcCc-eEE
Confidence 99983 55999999999999999999999999877 4599999999843 578888898888754 233
Q ss_pred EEecCcCC-HHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec--------CcceeeecCCCCC
Q 017085 249 HFVNKTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--------GTTGLLHPVGKEG 319 (377)
Q Consensus 249 ~~~g~~~~-~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~--------~~~g~~~~~~~~~ 319 (377)
...|+.+. ...+++.||++++||+ +|+||++.++||.+|+++|+..+||+++.+.+ ..+|+++.+.+
T Consensus 353 ~~i~~~~~la~~i~agaD~~lmPSr--fEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~-- 428 (487)
T COG0297 353 VVIGYDEPLAHLIYAGADVILMPSR--FEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTN-- 428 (487)
T ss_pred EEeeecHHHHHHHHhcCCEEEeCCc--CcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCC--
Confidence 44455544 4578899999999999 99999999999999999999999999999985 47999999988
Q ss_pred hhHHHHHHHHHhh---CHHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 017085 320 ITPLAKNIVKLAT---HVER-RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 373 (377)
Q Consensus 320 ~~~la~~i~~l~~---~~~~-~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 373 (377)
+++++.+|.+.+. ++.. .+.+..++.. ..|+|+..++++.++|+.+++...
T Consensus 429 ~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~---~d~sw~~sa~~y~~lY~~~~~~~~ 483 (487)
T COG0297 429 PDHLANALRRALVLYRAPPLLWRKVQPNAMG---ADFSWDLSAKEYVELYKPLLSKPF 483 (487)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHhhcc---cccCchhHHHHHHHHHHHHhcccc
Confidence 9999999998765 4443 6666666554 569999999999999999987653
No 79
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.94 E-value=6.4e-25 Score=199.84 Aligned_cols=275 Identities=12% Similarity=0.089 Sum_probs=191.8
Q ss_pred chhHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhh
Q 017085 48 GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNR 127 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 127 (377)
....++++.+||+|+++++.+.. ..+..... ...|++...++.. ....+..+.+|.+++.++...+.+.
T Consensus 95 ~l~~~l~~~kPDvVi~~~p~~~~--~~l~~~~~--~~iP~~~v~td~~-----~~~~w~~~~~d~~~v~s~~~~~~l~-- 163 (391)
T PRK13608 95 KLINLLIKEKPDLILLTFPTPVM--SVLTEQFN--INIPVATVMTDYR-----LHKNWITPYSTRYYVATKETKQDFI-- 163 (391)
T ss_pred HHHHHHHHhCcCEEEECCcHHHH--HHHHHhcC--CCCCEEEEeCCCC-----cccccccCCCCEEEECCHHHHHHHH--
Confidence 45566778999999998776432 22221111 1235554444431 1122345788999999998888776
Q ss_pred hhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCe-EEEEeccccccchhHHHHHHHHHHHHHH
Q 017085 128 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQDLFLHSFYESLELI 206 (377)
Q Consensus 128 ~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~~G~~~~~Kg~~~ll~a~~~l~~~l 206 (377)
..|++.+++.+++++++..+.... .+...++.++++++.+ ++++.|++...||++.+++++.+
T Consensus 164 ---~~gi~~~ki~v~GiPv~~~f~~~~--------~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~~----- 227 (391)
T PRK13608 164 ---DVGIDPSTVKVTGIPIDNKFETPI--------DQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDILA----- 227 (391)
T ss_pred ---HcCCCHHHEEEECeecChHhcccc--------cHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHHh-----
Confidence 447788899998888765442211 1345677899976654 55678999988999999997531
Q ss_pred hhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHH
Q 017085 207 KEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 286 (377)
Q Consensus 207 ~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~ 286 (377)
..+++++++++++.. ...+++++. .+..++|+++|+++++.++|+.||+++.. +.|+++.|||
T Consensus 228 -----~~~~~~~vvv~G~~~---~l~~~l~~~---~~~~~~v~~~G~~~~~~~~~~~aDl~I~k------~gg~tl~EA~ 290 (391)
T PRK13608 228 -----KSANAQVVMICGKSK---ELKRSLTAK---FKSNENVLILGYTKHMNEWMASSQLMITK------PGGITISEGL 290 (391)
T ss_pred -----cCCCceEEEEcCCCH---HHHHHHHHH---hccCCCeEEEeccchHHHHHHhhhEEEeC------CchHHHHHHH
Confidence 226788876644311 133444433 33446899999999999999999999952 3588999999
Q ss_pred HcCCcEEEeC-CCC----cccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017085 287 AFQLPVLGTA-AGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 361 (377)
Q Consensus 287 a~g~PvI~s~-~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 361 (377)
++|+|+|+++ .++ ...++.+.+.|+.. .+ .++++++|.++++|++.+.+|++++++.. +.|+++.+++++
T Consensus 291 a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~--~~--~~~l~~~i~~ll~~~~~~~~m~~~~~~~~-~~~s~~~i~~~l 365 (391)
T PRK13608 291 ARCIPMIFLNPAPGQELENALYFEEKGFGKIA--DT--PEEAIKIVASLTNGNEQLTNMISTMEQDK-IKYATQTICRDL 365 (391)
T ss_pred HhCCCEEECCCCCCcchhHHHHHHhCCcEEEe--CC--HHHHHHHHHHHhcCHHHHHHHHHHHHHhc-CCCCHHHHHHHH
Confidence 9999999996 333 12233344455553 35 89999999999999999999999999865 459999999999
Q ss_pred HHHHHHHHhc
Q 017085 362 AVVLKEVLKK 371 (377)
Q Consensus 362 ~~~~~~~~~~ 371 (377)
.+++..+...
T Consensus 366 ~~l~~~~~~~ 375 (391)
T PRK13608 366 LDLIGHSSQP 375 (391)
T ss_pred HHHhhhhhhh
Confidence 9988765443
No 80
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.93 E-value=3.4e-24 Score=208.62 Aligned_cols=293 Identities=16% Similarity=0.158 Sum_probs=201.0
Q ss_pred cccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-------cchhhhccccccceeeeeccchhhHhhhhhh
Q 017085 57 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 129 (377)
Q Consensus 57 ~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 129 (377)
.-|+|++|+...... ...++...+. .++.+..|-.++.. +......-+-.+|.+-..+......|.+...
T Consensus 133 ~~d~vwvhDYhl~l~-p~~lr~~~~~--~~igfFlH~pfP~~~~f~~lp~~~~ll~~ll~~Dligf~t~~~~r~Fl~~~~ 209 (726)
T PRK14501 133 PGDVVWVHDYQLMLL-PAMLRERLPD--ARIGFFLHIPFPSFEVFRLLPWREEILEGLLGADLIGFHTYDYVRHFLSSVL 209 (726)
T ss_pred CCCEEEEeCchhhhH-HHHHHhhCCC--CcEEEEeeCCCCChHHHhhCCChHHHHHHHhcCCeEEeCCHHHHHHHHHHHH
Confidence 349999998654332 2333333333 37888888765432 1122223334666677777666666555444
Q ss_pred hhhhc-----------cCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHH
Q 017085 130 ERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 198 (377)
Q Consensus 130 ~~~~~-----------~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a 198 (377)
+.++. ...++.++|||||++.|.+.............+|+.+ .+.++|+++||+++.||+..+++|
T Consensus 210 ~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~~il~VgRl~~~Kgi~~~l~A 286 (726)
T PRK14501 210 RVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGRKIILSIDRLDYTKGIPRRLLA 286 (726)
T ss_pred HHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---CCCEEEEEecCcccccCHHHHHHH
Confidence 43332 1235899999999999986543222222233455553 466789999999999999999999
Q ss_pred HHHHHHHHhhhcccCC----CeEEEEEecCCCcc----cHHHHHHHHHHHhcC-------CCCcEEEecCc--CCHHHHH
Q 017085 199 FYESLELIKEKKLEVP----SVHAVIIGSDMNAQ----TKFESELRNYVMQKK-------IQDRVHFVNKT--LTVAPYL 261 (377)
Q Consensus 199 ~~~l~~~l~~~~~~~~----~~~l~i~G~~~~~~----~~~~~~l~~~~~~~~-------~~~~v~~~g~~--~~~~~~~ 261 (377)
++.+++ ++| +++|+++|.+.... .++..++.+++.+.+ ....+.+.|.. +++..+|
T Consensus 287 ~~~ll~-------~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly 359 (726)
T PRK14501 287 FERFLE-------KNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALY 359 (726)
T ss_pred HHHHHH-------hCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHH
Confidence 998765 334 47898887432211 123444444443322 11234455654 8899999
Q ss_pred HhcCEEEecCCCCCCccchHHHHHHHcCC-----cEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhC-HH
Q 017085 262 AAIDVLVQNSQAWGECFGRITIEAMAFQL-----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VE 335 (377)
Q Consensus 262 ~~adv~l~ps~~~~e~~~~~~~Ea~a~g~-----PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~-~~ 335 (377)
+.||++++||. .||||++++|||+||+ ||++...|+..++. .|+++++.| ++++|++|.+++++ .+
T Consensus 360 ~~aDv~v~~S~--~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d--~~~la~ai~~~l~~~~~ 431 (726)
T PRK14501 360 RAADVALVTPL--RDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPND--IEGIAAAIKRALEMPEE 431 (726)
T ss_pred HhccEEEeccc--ccccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCC--HHHHHHHHHHHHcCCHH
Confidence 99999999999 9999999999999955 56666677777765 489999998 99999999999985 35
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 017085 336 RRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 371 (377)
Q Consensus 336 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 371 (377)
.+.+...++++.+ .+|||+.+++++++.|.++...
T Consensus 432 e~~~r~~~~~~~v-~~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 432 EQRERMQAMQERL-RRYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhh
Confidence 5666667788887 5799999999999999987543
No 81
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.93 E-value=7e-25 Score=198.82 Aligned_cols=260 Identities=14% Similarity=0.030 Sum_probs=172.5
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccc------hhhhccccccceeeeeccchhhHhhhhhh
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMIDSHVTAEYWKNRTR 129 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 129 (377)
.+.++++.+.+....+... . ...++|++.++....... ......++.+|.+++.|....+.+.+
T Consensus 101 ~~~~i~~~~~P~~~~~~~~-----~--~~~~~Vyd~~D~~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~l~~~~~~--- 170 (373)
T cd04950 101 FGRPILWYYTPYTLPVAAL-----L--QASLVVYDCVDDLSAFPGGPPELLEAERRLLKRADLVFTTSPSLYEAKRR--- 170 (373)
T ss_pred CCCcEEEEeCccHHHHHhh-----c--CCCeEEEEcccchhccCCCCHHHHHHHHHHHHhCCEEEECCHHHHHHHhh---
Confidence 3445666665554433332 1 124788888876543221 12345668899999999998876653
Q ss_pred hhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhh
Q 017085 130 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 209 (377)
Q Consensus 130 ~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~ 209 (377)
++ .++.++|||+|.+.|.+...... . .+.. ...++++++|+|++.+.++++.+.+++.
T Consensus 171 --~~---~~i~~i~ngvd~~~f~~~~~~~~----~--~~~~--~~~~~~~i~y~G~l~~~~d~~ll~~la~--------- 228 (373)
T cd04950 171 --LN---PNVVLVPNGVDYEHFAAARDPPP----P--PADL--AALPRPVIGYYGAIAEWLDLELLEALAK--------- 228 (373)
T ss_pred --CC---CCEEEcccccCHHHhhcccccCC----C--hhHH--hcCCCCEEEEEeccccccCHHHHHHHHH---------
Confidence 23 68999999999998865432110 0 0111 1246689999999999778766554433
Q ss_pred cccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCC---CCCccchHHHH
Q 017085 210 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA---WGECFGRITIE 284 (377)
Q Consensus 210 ~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~---~~e~~~~~~~E 284 (377)
..++++|+++|++.... .... +...+||+|+|.+ +++..+++.+|++++|+.. ..+++|++++|
T Consensus 229 --~~p~~~~vliG~~~~~~--~~~~-------~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~E 297 (373)
T cd04950 229 --ARPDWSFVLIGPVDVSI--DPSA-------LLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFE 297 (373)
T ss_pred --HCCCCEEEEECCCcCcc--ChhH-------hccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHH
Confidence 22889999999972111 1111 1113689999987 7899999999999999863 13468999999
Q ss_pred HHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017085 285 AMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 364 (377)
Q Consensus 285 a~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 364 (377)
|||||+|||+|+.+.+.+ ....+++ ..+| +++++++|.+++.++...... .+++ +.+.|||+..++++.+.
T Consensus 298 ylA~G~PVVat~~~~~~~---~~~~~~~-~~~d--~~~~~~ai~~~l~~~~~~~~~--~~~~-~~~~~sW~~~a~~~~~~ 368 (373)
T cd04950 298 YLAAGKPVVATPLPEVRR---YEDEVVL-IADD--PEEFVAAIEKALLEDGPARER--RRLR-LAAQNSWDARAAEMLEA 368 (373)
T ss_pred HhccCCCEEecCcHHHHh---hcCcEEE-eCCC--HHHHHHHHHHHHhcCCchHHH--HHHH-HHHHCCHHHHHHHHHHH
Confidence 999999999998655443 3333444 4455 999999999976543211111 2222 45679999999999966
Q ss_pred HHH
Q 017085 365 LKE 367 (377)
Q Consensus 365 ~~~ 367 (377)
+.+
T Consensus 369 l~~ 371 (373)
T cd04950 369 LQE 371 (373)
T ss_pred HHh
Confidence 543
No 82
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.92 E-value=5.3e-22 Score=180.72 Aligned_cols=292 Identities=13% Similarity=0.091 Sum_probs=208.1
Q ss_pred cccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-------cchhhhccccccceeeeeccchhhHhhhhhh
Q 017085 57 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 129 (377)
Q Consensus 57 ~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 129 (377)
.-|+|++|+.-... +...++...+. .++.+.+|-.++.. +.....+-+-.+|.+-..+...+..|.+...
T Consensus 132 ~~d~vWVhDYhL~l-lp~~LR~~~~~--~~IgfFlHiPFPs~eifr~LP~r~~ll~glL~aDliGFqt~~y~~~Fl~~~~ 208 (487)
T TIGR02398 132 EGATVWVHDYNLWL-VPGYIRQLRPD--LKIAFFHHTPFPSADVFNILPWREQIIGSLLCCDYIGFHIPRYVENFVDAAR 208 (487)
T ss_pred CCCEEEEecchhhH-HHHHHHHhCCC--CeEEEEeeCCCCChHHHhhCCchHHHHHHHhcCCeEEeCCHHHHHHHHHHHH
Confidence 34899999854332 33333333433 37888888655422 1222233334667777777777766666554
Q ss_pred hhhhccC--------------------------------CCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCC
Q 017085 130 ERLRIKM--------------------------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED 177 (377)
Q Consensus 130 ~~~~~~~--------------------------------~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 177 (377)
+.+|+.. -++.++|.|||++.|...............+|++++ ++
T Consensus 209 r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~---~~ 285 (487)
T TIGR02398 209 GLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIREMMERIRSELA---GV 285 (487)
T ss_pred HHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC---Cc
Confidence 4443211 137899999999998765433333344566888887 57
Q ss_pred eEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcc----cHHHHHHHHHHHhc-------CCCC
Q 017085 178 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQK-------KIQD 246 (377)
Q Consensus 178 ~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~----~~~~~~l~~~~~~~-------~~~~ 246 (377)
.+|++++|++..||+...++|+.++++..++. ..+++|+++|.+.... ..+..++++.+.+. +..+
T Consensus 286 kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~---~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~p 362 (487)
T TIGR02398 286 KLILSAERVDYTKGILEKLNAYERLLERRPEL---LGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTP 362 (487)
T ss_pred eEEEEecccccccCHHHHHHHHHHHHHhCccc---cCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCcc
Confidence 88999999999999999999999987632210 1247999888764322 23455566666554 5555
Q ss_pred cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCC----cEEEeCCCCcccceecCcceeeecCCCCCh
Q 017085 247 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGI 320 (377)
Q Consensus 247 ~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~----PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~ 320 (377)
.+.+.+.. +++..+|+.||+++.+|. .||++++..|+++|+. |+|.|..+|..+.+ ..+++++|.| +
T Consensus 363 v~~~~~~v~~~el~alYr~ADV~lvT~l--rDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l---~~AllVNP~d--~ 435 (487)
T TIGR02398 363 LQFFTRSLPYEEVSAWFAMADVMWITPL--RDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVEL---KGALLTNPYD--P 435 (487)
T ss_pred EEEEcCCCCHHHHHHHHHhCCEEEECcc--ccccCcchhhHHhhhcCCCCCEEEeccccchhhc---CCCEEECCCC--H
Confidence 67777775 889999999999999999 9999999999999998 99999999988766 3579999998 9
Q ss_pred hHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 321 TPLAKNIVKLATH-VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 321 ~~la~~i~~l~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
+++|++|.++++. .+++.+..+..++.+ .+++...+++.+..-+
T Consensus 436 ~~~A~ai~~AL~m~~~Er~~R~~~l~~~v-~~~d~~~W~~~fl~~l 480 (487)
T TIGR02398 436 VRMDETIYVALAMPKAEQQARMREMFDAV-NYYDVQRWADEFLAAV 480 (487)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHh
Confidence 9999999999994 445555566666666 5589999998887544
No 83
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.90 E-value=5e-22 Score=181.26 Aligned_cols=317 Identities=15% Similarity=0.119 Sum_probs=195.7
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEE--------------EccchhHHHhhhcccEEEEcCchh
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--------------SAKGQETINTALKADLIVLNTAVA 68 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~Div~~~~~~~ 68 (377)
++++|++.++++.+++.......... ....+....+.+. .......+++..+||+||+++. .
T Consensus 20 l~~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~l~~~kPdivi~~~~-~ 95 (380)
T PRK00025 20 LIRALKARAPNLEFVGVGGPRMQAAG---CESLFDMEELAVMGLVEVLPRLPRLLKIRRRLKRRLLAEPPDVFIGIDA-P 95 (380)
T ss_pred HHHHHHhcCCCcEEEEEccHHHHhCC---CccccCHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCC-C
Confidence 68899998999999986542111000 0000000111111 1123445567789999999863 2
Q ss_pred hhHH---HHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcC
Q 017085 69 GKWL---DAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLG 145 (377)
Q Consensus 69 ~~~~---~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ng 145 (377)
+.+. ..+...+ .|++.+.+.....+......+..+.+|.+++.+....+++. ..|. ++.+++|+
T Consensus 96 ~~~~~~a~~a~~~~-----ip~i~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~-----~~g~---~~~~~G~p 162 (380)
T PRK00025 96 DFNLRLEKKLRKAG-----IPTIHYVSPSVWAWRQGRAFKIAKATDHVLALFPFEAAFYD-----KLGV---PVTFVGHP 162 (380)
T ss_pred CCCHHHHHHHHHCC-----CCEEEEeCCchhhcCchHHHHHHHHHhhheeCCccCHHHHH-----hcCC---CeEEECcC
Confidence 2222 1122222 36665555432122233333456788999999988877765 3343 25555555
Q ss_pred ChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEE-EEecc-cccc-chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEe
Q 017085 146 NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF-AIINS-VSRG-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG 222 (377)
Q Consensus 146 i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i-~~~G~-~~~~-Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G 222 (377)
+...... . ..+...++.++++++.+++ ++.|+ .... ++.+.+++++..+.+ +.++++++++|
T Consensus 163 ~~~~~~~--~------~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~-------~~~~~~~ii~~ 227 (380)
T PRK00025 163 LADAIPL--L------PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQ-------RYPDLRFVLPL 227 (380)
T ss_pred HHHhccc--c------cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH-------hCCCeEEEEec
Confidence 5332110 0 0135678889998776654 44453 3332 346788888887654 33789999987
Q ss_pred cCCCcccHHHHHHHHHHHhc-CCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe------
Q 017085 223 SDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT------ 295 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s------ 295 (377)
++. +..+.+++.+++. ++. +.+.. +++..+|+.||+++.+| |.+.+|||++|+|+|++
T Consensus 228 ~~~----~~~~~~~~~~~~~~~~~--v~~~~--~~~~~~~~~aDl~v~~s-------G~~~lEa~a~G~PvI~~~~~~~~ 292 (380)
T PRK00025 228 VNP----KRREQIEEALAEYAGLE--VTLLD--GQKREAMAAADAALAAS-------GTVTLELALLKVPMVVGYKVSPL 292 (380)
T ss_pred CCh----hhHHHHHHHHhhcCCCC--eEEEc--ccHHHHHHhCCEEEECc-------cHHHHHHHHhCCCEEEEEccCHH
Confidence 632 4567777777776 553 55544 58999999999999976 67888999999999987
Q ss_pred -----------CCCCcccceecCc--ceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017085 296 -----------AAGGTTEIVVNGT--TGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIA 362 (377)
Q Consensus 296 -----------~~~~~~e~~~~~~--~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 362 (377)
+.+++++++.++. .+++.+..+ ++++++++.++++|++.+++|++++.+.... . ....++++.
T Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~-~-~~~a~~~~~ 368 (380)
T PRK00025 293 TFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEAT--PEKLARALLPLLADGARRQALLEGFTELHQQ-L-RCGADERAA 368 (380)
T ss_pred HHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-h-CCCHHHHHH
Confidence 3455667766543 345555555 9999999999999999999999987654432 2 223455555
Q ss_pred HHHHHHHh
Q 017085 363 VVLKEVLK 370 (377)
Q Consensus 363 ~~~~~~~~ 370 (377)
+.+.+++.
T Consensus 369 ~~i~~~~~ 376 (380)
T PRK00025 369 QAVLELLK 376 (380)
T ss_pred HHHHHHhh
Confidence 55555443
No 84
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.90 E-value=1.6e-21 Score=176.86 Aligned_cols=253 Identities=17% Similarity=0.105 Sum_probs=169.4
Q ss_pred hHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecc----cccchhhhccccccceeeeeccchhhHhh
Q 017085 50 ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG----HYFKLDYVKHLPLVAGAMIDSHVTAEYWK 125 (377)
Q Consensus 50 ~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 125 (377)
...++..+||+||+|+.....+......... ..|++...|+..+ ..+........+.+|.+++.++...+++.
T Consensus 81 ~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~---~iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~ 157 (363)
T cd03786 81 EAVLLEEKPDLVLVLGDTNETLAAALAAFKL---GIPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEARRNLL 157 (363)
T ss_pred HHHHHHhCCCEEEEeCCchHHHHHHHHHHHc---CCCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 3445667999999997543322221111111 2366655444322 11111111234577889999998888776
Q ss_pred hhhhhhhhccCCCeEEEEcCC-hhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccc---cchhHHHHHHHHH
Q 017085 126 NRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR---GKGQDLFLHSFYE 201 (377)
Q Consensus 126 ~~~~~~~~~~~~~~~vi~ngi-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~---~Kg~~~ll~a~~~ 201 (377)
+.|++++++.+++|++ |...+..... .....++.++++++.+++++.|+... .|+++.+++++..
T Consensus 158 -----~~G~~~~kI~vign~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~ 226 (363)
T cd03786 158 -----QEGEPPERIFVVGNTMIDALLRLLELA------KKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAE 226 (363)
T ss_pred -----HcCCCcccEEEECchHHHHHHHHHHhh------ccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHH
Confidence 5688889999999996 4332221111 01223567788777778888898764 7999999999987
Q ss_pred HHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC-CCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCcc
Q 017085 202 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 278 (377)
Q Consensus 202 l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~ 278 (377)
+.. .++.+++.|++ +..+.+++.+.++++ .+++.|.|.. +++..+|+.||+++.+|.
T Consensus 227 l~~---------~~~~vi~~~~~-----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg------ 286 (363)
T cd03786 227 LAE---------EDVPVVFPNHP-----RTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG------ 286 (363)
T ss_pred HHh---------cCCEEEEECCC-----ChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc------
Confidence 633 34666666655 356778888888776 6789999864 789999999999999883
Q ss_pred chHHHHHHHcCCcEEEeCC-CCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHH
Q 017085 279 GRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMG 341 (377)
Q Consensus 279 ~~~~~Ea~a~g~PvI~s~~-~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~ 341 (377)
| .+.|||++|+|+|+++. +...+.+.+ |+.+..++ ++++++++|.++++++..+..|.
T Consensus 287 g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~---g~~~~~~~-~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 287 G-IQEEASFLGVPVLNLRDRTERPETVES---GTNVLVGT-DPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred c-HHhhhhhcCCCEEeeCCCCccchhhhe---eeEEecCC-CHHHHHHHHHHHhcCchhhhcCC
Confidence 3 47899999999999974 445566543 44443331 28999999999999987766653
No 85
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.90 E-value=2e-22 Score=170.35 Aligned_cols=118 Identities=36% Similarity=0.471 Sum_probs=100.6
Q ss_pred EeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc---CCHH
Q 017085 182 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVA 258 (377)
Q Consensus 182 ~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~---~~~~ 258 (377)
++|++.+.||++.+++++..+.+ +.++++++++|.+. ........+.+.+..++|.+.|+. +++.
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~-------~~~~~~~~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 176 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKE-------RGPDLKLVIAGDGP-----EREYLEELLAALLLLDRVIFLGGLDPEELLA 176 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHH-------hCCCeEEEEEeCCC-----ChHHHHHHHHhcCCcccEEEeCCCCcHHHHH
Confidence 89999999999999999998755 34789999999984 334444446677778899999984 5566
Q ss_pred HHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeee
Q 017085 259 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH 313 (377)
Q Consensus 259 ~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~ 313 (377)
.+++.||++++||. .|++|++++|||++|+|+|+|+.++..|++.++++|+++
T Consensus 177 ~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 177 LLLAAADVFVLPSL--REGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred HHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 66677999999999 899999999999999999999999999999888899874
No 86
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.89 E-value=1.2e-21 Score=174.72 Aligned_cols=247 Identities=10% Similarity=0.110 Sum_probs=169.3
Q ss_pred HHhhhcc-cEEEEcCchhhh--HHHHHhhcCCCccccceeEEeeeecccccc------hhhhccccccceeeeeccchhh
Q 017085 52 INTALKA-DLIVLNTAVAGK--WLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMIDSHVTAE 122 (377)
Q Consensus 52 ~~~~~~~-Div~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~ 122 (377)
++...++ |+||+++|.... +...++. .+.....|+++++|+.++.... ......++.+|.++++|..+.+
T Consensus 58 ~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~-~~k~~~~k~i~~ihD~~~~~~~~~~~~~~~~~~~~~~aD~iI~~S~~~~~ 136 (333)
T PRK09814 58 ILASLKPGDIVIFQFPTWNGFEFDRLFVD-KLKKKQVKIIILIHDIEPLRFDSNYYLMKEEIDMLNLADVLIVHSKKMKD 136 (333)
T ss_pred HHhcCCCCCEEEEECCCCchHHHHHHHHH-HHHHcCCEEEEEECCcHHHhccccchhhHHHHHHHHhCCEEEECCHHHHH
Confidence 3444566 999999976432 1122221 1222246899999998754322 2234556899999999999999
Q ss_pred HhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHH
Q 017085 123 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 202 (377)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l 202 (377)
++. ..|++..++.++++..+....... . .+...+.++|+|++....+ +..
T Consensus 137 ~l~-----~~g~~~~~i~~~~~~~~~~~~~~~--------------~---~~~~~~~i~yaG~l~k~~~----l~~---- 186 (333)
T PRK09814 137 RLV-----EEGLTTDKIIVQGIFDYLNDIELV--------------K---TPSFQKKINFAGNLEKSPF----LKN---- 186 (333)
T ss_pred HHH-----HcCCCcCceEeccccccccccccc--------------c---cccCCceEEEecChhhchH----HHh----
Confidence 886 446666778777765543211000 0 0134568999999984322 110
Q ss_pred HHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCC-------
Q 017085 203 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA------- 273 (377)
Q Consensus 203 ~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~------- 273 (377)
..++++|+|+|+|+. .. ...++|+|.|+. +++..+|+. |+.+.+...
T Consensus 187 ---------~~~~~~l~i~G~g~~-----~~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~ 242 (333)
T PRK09814 187 ---------WSQGIKLTVFGPNPE-----DL---------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYG 242 (333)
T ss_pred ---------cCCCCeEEEECCCcc-----cc---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccch
Confidence 116799999999842 11 234689999987 788888888 766654320
Q ss_pred --CCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Q 017085 274 --WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEI 351 (377)
Q Consensus 274 --~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 351 (377)
..-++|.++.|+||+|+|||+++.+++++++.++++|++++ + .++++++|.++ +++.+.+|++++++.. ++
T Consensus 243 ~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~~~~G~~v~--~--~~el~~~l~~~--~~~~~~~m~~n~~~~~-~~ 315 (333)
T PRK09814 243 EYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIVENGLGFVVD--S--LEELPEIIDNI--TEEEYQEMVENVKKIS-KL 315 (333)
T ss_pred hhhhccchHHHHHHHHCCCCEEECCCccHHHHHHhCCceEEeC--C--HHHHHHHHHhc--CHHHHHHHHHHHHHHH-HH
Confidence 02468999999999999999999999999999999999998 4 78999999885 4577899999999866 44
Q ss_pred cCHHHHHHH
Q 017085 352 FQEHHMAER 360 (377)
Q Consensus 352 f~~~~~~~~ 360 (377)
+.-....++
T Consensus 316 ~~~g~~~~~ 324 (333)
T PRK09814 316 LRNGYFTKK 324 (333)
T ss_pred HhcchhHHH
Confidence 554444433
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.88 E-value=6.3e-21 Score=172.81 Aligned_cols=275 Identities=16% Similarity=0.149 Sum_probs=175.7
Q ss_pred chhHHHhhhcccEEEEcCchhhhHHHHH--hhcCCCccccceeEEeeeecc--cc--cchhh-hccc-cccceeeeeccc
Q 017085 48 GQETINTALKADLIVLNTAVAGKWLDAV--LKEDVPRVLPNVLWWIHEMRG--HY--FKLDY-VKHL-PLVAGAMIDSHV 119 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~h~~~~--~~--~~~~~-~~~~-~~~~~~~~~s~~ 119 (377)
.+..++++.+||+||+|+.....+..++ ...++ |++...++..+ .+ +.... +..+ +.++.+++.|+.
T Consensus 77 ~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~i-----pv~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~~ 151 (365)
T TIGR00236 77 GLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQI-----PVGHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPTEQ 151 (365)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCC-----CEEEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCCHH
Confidence 3455667899999999975433222222 22233 44433222221 11 11111 2223 346889999998
Q ss_pred hhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccc-cccchhHHHHHH
Q 017085 120 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDLFLHS 198 (377)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~-~~~Kg~~~ll~a 198 (377)
.++.+. +.|++++++.+++||+.......... ..+..++++++. ++.++++..+|. ...||++.++++
T Consensus 152 ~~~~l~-----~~G~~~~~I~vign~~~d~~~~~~~~-----~~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a 220 (365)
T TIGR00236 152 AKDNLL-----RENVKADSIFVTGNTVIDALLTNVEI-----AYSSPVLSEFGE-DKRYILLTLHRRENVGEPLENIFKA 220 (365)
T ss_pred HHHHHH-----HcCCCcccEEEeCChHHHHHHHHHhh-----ccchhHHHhcCC-CCCEEEEecCchhhhhhHHHHHHHH
Confidence 888776 45888889999999974433222111 012445666763 334444444443 345899999999
Q ss_pred HHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCC
Q 017085 199 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 276 (377)
Q Consensus 199 ~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e 276 (377)
+.++.+ +.++++++++|.+.+ ...+.+ .+.++..++|+|+|.. .++..+++.||+++.+|
T Consensus 221 ~~~l~~-------~~~~~~~vi~~~~~~---~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S----- 282 (365)
T TIGR00236 221 IREIVE-------EFEDVQIVYPVHLNP---VVREPL---HKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS----- 282 (365)
T ss_pred HHHHHH-------HCCCCEEEEECCCCh---HHHHHH---HHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----
Confidence 987654 337888888865421 122222 3334556789999976 46788999999998776
Q ss_pred ccchHHHHHHHcCCcEEEe-CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHH
Q 017085 277 CFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 355 (377)
Q Consensus 277 ~~~~~~~Ea~a~g~PvI~s-~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 355 (377)
|..++|||++|+|||++ +.++.++.+.++ .+++++ .| ++++++++.++++|++.+.+++.+...+ .+..+++
T Consensus 283 --g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~lv~-~d--~~~i~~ai~~ll~~~~~~~~~~~~~~~~-g~~~a~~ 355 (365)
T TIGR00236 283 --GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNKLVG-TD--KENITKAAKRLLTDPDEYKKMSNASNPY-GDGEASE 355 (365)
T ss_pred --hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceEEeC-CC--HHHHHHHHHHHHhChHHHHHhhhcCCCC-cCchHHH
Confidence 44579999999999996 678888888755 566664 45 9999999999999999888887665322 2234455
Q ss_pred HHHHHHHH
Q 017085 356 HMAERIAV 363 (377)
Q Consensus 356 ~~~~~~~~ 363 (377)
++++.+.+
T Consensus 356 ri~~~l~~ 363 (365)
T TIGR00236 356 RIVEELLN 363 (365)
T ss_pred HHHHHHHh
Confidence 55554443
No 88
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.86 E-value=1.9e-19 Score=174.27 Aligned_cols=292 Identities=15% Similarity=0.151 Sum_probs=202.6
Q ss_pred ccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-------cchhhhccccccceeeeeccchhhHhhhhhhh
Q 017085 58 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRE 130 (377)
Q Consensus 58 ~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 130 (377)
=|+|++|+.... .+...++...+. .++.+.+|-.++.. +......-+-.+|.|-..+...+..|.....+
T Consensus 232 gD~VWVHDYHL~-LlP~~LR~~~p~--~~IGfFlHiPFPs~Eifr~LP~r~elL~glL~aDlIGFqT~~y~rhFl~~c~r 308 (934)
T PLN03064 232 GDVVWCHDYHLM-FLPKCLKEYNSN--MKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTR 308 (934)
T ss_pred CCEEEEecchhh-HHHHHHHHhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEeCCHHHHHHHHHHHHH
Confidence 389999985433 333344444444 37888888665432 11222333346777777777777766665544
Q ss_pred hhhcc-----------CCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHH
Q 017085 131 RLRIK-----------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSF 199 (377)
Q Consensus 131 ~~~~~-----------~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~ 199 (377)
.+|.. .-++.++|.|||++.|...............++++++ ++.+|+.++|++..||+...+.|+
T Consensus 309 lLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~Af 385 (934)
T PLN03064 309 ILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA---GRKVMLGVDRLDMIKGIPQKILAF 385 (934)
T ss_pred HhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEEEeeccccccCHHHHHHHH
Confidence 44432 1236788999999998765443333344566777775 567899999999999999999999
Q ss_pred HHHHHHHhhhcccCCCe----EEEEEecCCCcccHHHHH----HHHHHHhcC----CCC--cEEEecC-c--CCHHHHHH
Q 017085 200 YESLELIKEKKLEVPSV----HAVIIGSDMNAQTKFESE----LRNYVMQKK----IQD--RVHFVNK-T--LTVAPYLA 262 (377)
Q Consensus 200 ~~l~~~l~~~~~~~~~~----~l~i~G~~~~~~~~~~~~----l~~~~~~~~----~~~--~v~~~g~-~--~~~~~~~~ 262 (377)
+.+++ ++|++ .|+-+......+.+.+++ +.+.+.+.+ -.+ -|+++.. . +++.++|+
T Consensus 386 E~fL~-------~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~ 458 (934)
T PLN03064 386 EKFLE-------ENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYA 458 (934)
T ss_pred HHHHH-------hCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHH
Confidence 98766 33554 344333221111123333 444333322 111 1444432 2 78999999
Q ss_pred hcCEEEecCCCCCCccchHHHHHHHcCC----cEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-CHHHH
Q 017085 263 AIDVLVQNSQAWGECFGRITIEAMAFQL----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERR 337 (377)
Q Consensus 263 ~adv~l~ps~~~~e~~~~~~~Ea~a~g~----PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~~ 337 (377)
.||++|+||. .||++++..|||+|+. ++|.|..+|..+.+ +..+++++|.| ++++|++|.++++ +++++
T Consensus 459 ~ADV~lvTsl--rDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~D--~~~vA~AI~~AL~M~~~Er 532 (934)
T PLN03064 459 VTDVALVTSL--RDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPWN--ITEVAASIAQALNMPEEER 532 (934)
T ss_pred hCCEEEeCcc--ccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCCC--HHHHHHHHHHHHhCCHHHH
Confidence 9999999999 9999999999999954 55559988888877 44689999998 9999999999999 88889
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017085 338 LTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 338 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 369 (377)
.+.....++++. .+++..+++.+.+-+.+..
T Consensus 533 ~~r~~~~~~~V~-~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 533 EKRHRHNFMHVT-THTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHHHhhcc-cCCHHHHHHHHHHHHHHHH
Confidence 999999999874 5999999999888776664
No 89
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1.8e-19 Score=162.37 Aligned_cols=225 Identities=28% Similarity=0.410 Sum_probs=178.1
Q ss_pred cceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCC--eEEEEecccc
Q 017085 110 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED--LLFAIINSVS 187 (377)
Q Consensus 110 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~i~~~G~~~ 187 (377)
.+.++..+......... .. ...++.+++++++...+... ..++..+. ..++++|++.
T Consensus 151 ~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~g~~~ 209 (381)
T COG0438 151 ADRVIAVSPALKELLEA-----LG-VPNKIVVIPNGIDTEKFAPA---------------RIGLLPEGGKFVVLYVGRLD 209 (381)
T ss_pred ccEEEECCHHHHHHHHH-----hC-CCCCceEecCCcCHHHcCcc---------------ccCCCcccCceEEEEeeccC
Confidence 55566666655333332 22 22378999999999876531 11222333 7899999999
Q ss_pred ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcC--CHHHHHHhcC
Q 017085 188 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAID 265 (377)
Q Consensus 188 ~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~--~~~~~~~~ad 265 (377)
+.||++.+++++..+.+ ..+++.++++|.+... ...+...+.+.+..+++.|.|... ++..+++.||
T Consensus 210 ~~k~~~~~i~~~~~~~~-------~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 278 (381)
T COG0438 210 PEKGLDLLIEAAAKLKK-------RGPDIKLVIVGDGPER----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASAD 278 (381)
T ss_pred hhcCHHHHHHHHHHhhh-------hcCCeEEEEEcCCCcc----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCC
Confidence 99999999999997755 2244899999998532 355666778888778999999874 7888899999
Q ss_pred EEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHH
Q 017085 266 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 345 (377)
Q Consensus 266 v~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~ 345 (377)
++++||. .|++|++++|||++|+|||+++.++..+++.++.+|+++...+ .+++++++..++++++.+..+...++
T Consensus 279 ~~v~ps~--~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~ 354 (381)
T COG0438 279 VFVLPSL--SEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVPPGD--VEELADALEQLLEDPELREELGEAAR 354 (381)
T ss_pred EEEeccc--cccchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999 7999999999999999999999999999998876788766665 89999999999999888888888677
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHh
Q 017085 346 ERVKEIFQEHHMAERIAVVLKEVLK 370 (377)
Q Consensus 346 ~~~~~~f~~~~~~~~~~~~~~~~~~ 370 (377)
+.+.+.|+|+.+++++.+++.....
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 355 ERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 7676889999999999999987654
No 90
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.85 E-value=6.5e-19 Score=146.98 Aligned_cols=235 Identities=20% Similarity=0.212 Sum_probs=184.0
Q ss_pred cccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecc
Q 017085 106 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 185 (377)
Q Consensus 106 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~ 185 (377)
.-..+|.+++.|.++.....+- . ...++.+++.+.+.+........ -..+.+.++++|.
T Consensus 219 ~G~~ad~vm~NssWT~nHI~qi----W--~~~~~~iVyPPC~~e~lks~~~t---------------e~~r~~~ll~l~Q 277 (465)
T KOG1387|consen 219 AGSKADIVMTNSSWTNNHIKQI----W--QSNTCSIVYPPCSTEDLKSKFGT---------------EGERENQLLSLAQ 277 (465)
T ss_pred ccccceEEEecchhhHHHHHHH----h--hccceeEEcCCCCHHHHHHHhcc---------------cCCcceEEEEEee
Confidence 3368899999999998887752 2 23678899988888744332211 0255688999999
Q ss_pred ccccchhHHHHHHHH--HHHHHHhhhcccCCCeEEEEEecCCC-cccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHH
Q 017085 186 VSRGKGQDLFLHSFY--ESLELIKEKKLEVPSVHAVIIGSDMN-AQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPY 260 (377)
Q Consensus 186 ~~~~Kg~~~ll~a~~--~l~~~l~~~~~~~~~~~l~i~G~~~~-~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~ 260 (377)
++|.|++. +++.++ .....+.+ ..++++|+++|+... ++.+..+.+++++++++++.+|.|.-.. +++..+
T Consensus 278 ~RPEKnH~-~Lql~Al~~~~~pl~a---~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~l 353 (465)
T KOG1387|consen 278 FRPEKNHK-ILQLFALYLKNEPLEA---SVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVEL 353 (465)
T ss_pred cCcccccH-HHHHHHHHHhcCchhh---ccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHH
Confidence 99999999 555444 33222222 236799999999644 3345678889999999999999999876 899999
Q ss_pred HHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC-cccceec---CcceeeecCCCCChhHHHHHHHHHhh-CHH
Q 017085 261 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG-TTEIVVN---GTTGLLHPVGKEGITPLAKNIVKLAT-HVE 335 (377)
Q Consensus 261 ~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~-~~e~~~~---~~~g~~~~~~~~~~~~la~~i~~l~~-~~~ 335 (377)
|..|.+.+..-- .|.||+.++|+||+|+-+|+.+.|| .-+++.+ ..+|++.+. .++.++++.+++. +++
T Consensus 354 L~~a~iGvh~Mw--NEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t----~~EYaE~iLkIv~~~~~ 427 (465)
T KOG1387|consen 354 LGKATIGVHTMW--NEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPT----DEEYAEAILKIVKLNYD 427 (465)
T ss_pred hccceeehhhhh--hhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecCC----hHHHHHHHHHHHHcCHH
Confidence 999999998876 8999999999999999999998776 4455554 357898853 7899999999988 788
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Q 017085 336 RRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 372 (377)
Q Consensus 336 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 372 (377)
.+..|+.+||+.+ .+|+-....+.+...++.++++.
T Consensus 428 ~r~~~r~~AR~s~-~RFsE~~F~kd~~~~i~kll~e~ 463 (465)
T KOG1387|consen 428 ERNMMRRNARKSL-ARFGELKFDKDWENPICKLLEEE 463 (465)
T ss_pred HHHHHHHHHHHHH-HHhhHHHHHHhHhHHHHHhhccc
Confidence 8999999999876 56999999999999998888654
No 91
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.82 E-value=3.9e-18 Score=154.54 Aligned_cols=311 Identities=15% Similarity=0.078 Sum_probs=184.9
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhh-h-hhhhcccCc-eEE--------EccchhHHHhhhcccEEEEcCchhhh
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYS-L-EHKMWDRGV-QVI--------SAKGQETINTALKADLIVLNTAVAGK 70 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~-~-~~~~~~~~~-~~~--------~~~~~~~~~~~~~~Div~~~~~~~~~ 70 (377)
.|+++|++.|+++.++...++.-....... + ...+...|+ ..+ .......++++.+||+|++++.....
T Consensus 23 al~~~l~~~~~~~~~~g~gg~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~~~~~l~~~kPd~vi~~g~~~~~ 102 (385)
T TIGR00215 23 GLRQQLKEHYPNARFIGVAGPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKEVVQLAKQAKPDLLVGIDAPDFN 102 (385)
T ss_pred HHHHHHHhcCCCcEEEEEccHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Confidence 378999999999999986643100000000 0 000111111 000 01133455677999999999853322
Q ss_pred HHH--HHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChh
Q 017085 71 WLD--AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSK 148 (377)
Q Consensus 71 ~~~--~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~ 148 (377)
+.. ++...+ .|+++++.-..+.|-....+.+.+.+|.+++.+....+++.+ .| .++.++.|++..
T Consensus 103 ~~~a~aa~~~g-----ip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~~~e~~~~~~-----~g---~~~~~vGnPv~~ 169 (385)
T TIGR00215 103 LTKELKKKDPG-----IKIIYYISPQVWAWRKWRAKKIEKATDFLLAILPFEKAFYQK-----KN---VPCRFVGHPLLD 169 (385)
T ss_pred HHHHHHHhhCC-----CCEEEEeCCcHhhcCcchHHHHHHHHhHhhccCCCcHHHHHh-----cC---CCEEEECCchhh
Confidence 222 222222 356544321111222333444557889999999988887653 22 356678888743
Q ss_pred hhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEe-c-cccc-cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCC
Q 017085 149 ELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII-N-SVSR-GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 225 (377)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~-G-~~~~-~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~ 225 (377)
...... ..+...|+.++++++.+++++. | |..+ .|+...+++++..+.+ +.+++++++.+...
T Consensus 170 ~~~~~~-------~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~-------~~p~~~~vi~~~~~ 235 (385)
T TIGR00215 170 AIPLYK-------PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQ-------QEPDLRRVLPVVNF 235 (385)
T ss_pred hccccC-------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHH-------hCCCeEEEEEeCCc
Confidence 321100 1134568889998777766554 3 5555 6788889999887654 34788887765432
Q ss_pred CcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC-CC------
Q 017085 226 NAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA-AG------ 298 (377)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~-~~------ 298 (377)
...+.+++..+.++....+.+.+. ++..+|++||+++++| |.+.+|+|++|+|+|.+. .+
T Consensus 236 ----~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-------Gt~tlEa~a~G~P~Vv~yk~~pl~~~~ 302 (385)
T TIGR00215 236 ----KRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-------GTAALEAALIKTPMVVGYRMKPLTFLI 302 (385)
T ss_pred ----hhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-------CHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 234556666666666556776653 6778999999999988 566779999999999872 21
Q ss_pred ----------CcccceecCcceeeecCCCCChhHHHHHHHHHhhCH----HHHHHHHHHHHHHHHHhcC
Q 017085 299 ----------GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV----ERRLTMGKRGYERVKEIFQ 353 (377)
Q Consensus 299 ----------~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~----~~~~~~~~~~~~~~~~~f~ 353 (377)
+++.++.+....-.+-.++-+++.+++.+.++++|+ +.+.++.+...+ +.+...
T Consensus 303 ~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~l~ 370 (385)
T TIGR00215 303 ARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEE-LRQRIY 370 (385)
T ss_pred HHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH-HHHHhc
Confidence 222333222211111222224889999999999999 877777666554 334443
No 92
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.81 E-value=8.2e-18 Score=156.19 Aligned_cols=219 Identities=12% Similarity=0.131 Sum_probs=171.0
Q ss_pred ccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEec
Q 017085 105 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 184 (377)
Q Consensus 105 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G 184 (377)
..+..++.+++.+....+.+..++.+.. ...++..||.+.- ... +.... .....+++++
T Consensus 268 ~~~~~~d~iIv~T~~q~~~l~~~~~~~~--~~~~v~~Ip~~~~-~~~-~~~s~-----------------r~~~~~I~v~ 326 (519)
T TIGR03713 268 ESLSRADLIIVDREDIERLLEENYRENY--VEFDISRITPFDT-RLR-LGQSQ-----------------QLYETEIGFW 326 (519)
T ss_pred hChhhcCeEEEcCHHHHHHHHHHhhhcc--cCCcceeeCccce-EEe-cChhh-----------------cccceEEEEE
Confidence 3456788899888776666665433210 1134556664433 111 10000 2233456677
Q ss_pred --cccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-----------------
Q 017085 185 --SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ----------------- 245 (377)
Q Consensus 185 --~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~----------------- 245 (377)
|+ +.|.++.+|+++.++.+ +.|+++|.+.|-+.+. ...+.+++.++++++.
T Consensus 327 idrL-~ek~~~~~I~av~~~~~-------~~p~~~L~~~gy~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 396 (519)
T TIGR03713 327 IDGL-SDEELQQILQQLLQYIL-------KNPDYELKILTYNNDN--DITQLLEDILEQINEEYNQDKNFFSLSEQDENQ 396 (519)
T ss_pred cCCC-ChHHHHHHHHHHHHHHh-------hCCCeEEEEEEecCch--hHHHHHHHHHHHHHhhhchhhhccccchhhhhh
Confidence 99 99999999999998866 5599999999987431 3456777777777666
Q ss_pred ------------CcEEEecCcC--CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCccee
Q 017085 246 ------------DRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL 311 (377)
Q Consensus 246 ------------~~v~~~g~~~--~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~ 311 (377)
++|.|.|... ++.+.|..+.+++.+|. .|+++ +++||++.|+|+| .-|..+++.+++||+
T Consensus 397 ~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI---nyg~~~~V~d~~NG~ 470 (519)
T TIGR03713 397 PILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI---NKVETDYVEHNKNGY 470 (519)
T ss_pred hcccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee---ecCCceeeEcCCCcE
Confidence 7999999886 99999999999999999 99999 9999999999999 455689999999999
Q ss_pred eecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 312 LHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 312 ~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
++ ++ .++|+++|..++++++.+.++...+++.+ ++||-+++.++|.+++
T Consensus 471 li--~d--~~~l~~al~~~L~~~~~wn~~~~~sy~~~-~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 471 II--DD--ISELLKALDYYLDNLKNWNYSLAYSIKLI-DDYSSENIIERLNELI 519 (519)
T ss_pred Ee--CC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhhC
Confidence 99 45 99999999999999999999999999987 6699999999998763
No 93
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.81 E-value=1.5e-17 Score=156.18 Aligned_cols=186 Identities=13% Similarity=0.157 Sum_probs=145.8
Q ss_pred CCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCccc---HHHHHHHHHHHhcCCCCcEE
Q 017085 173 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT---KFESELRNYVMQKKIQDRVH 249 (377)
Q Consensus 173 ~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~---~~~~~l~~~~~~~~~~~~v~ 249 (377)
++++.+++++++|+..+||+++++.++..+.+.+.+. ..+++|++.|.+.+.+. .+.+.+..++++...+++|.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~---~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~ 461 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNNP---ERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIV 461 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCC---CCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEE
Confidence 4567789999999999999999999999887544321 14699999999876421 24556666666544667888
Q ss_pred EecC-cCCH-HHHHHhcCEEEe-cCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecC-----------
Q 017085 250 FVNK-TLTV-APYLAAIDVLVQ-NSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPV----------- 315 (377)
Q Consensus 250 ~~g~-~~~~-~~~~~~adv~l~-ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~----------- 315 (377)
|+.. -..+ ..++++||++++ ||+. .|++|++-+-||..|.+.+++--|...|.. ++.+||.+..
T Consensus 462 f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d 539 (601)
T TIGR02094 462 FLENYDINLARYLVSGVDVWLNNPRRP-LEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQD 539 (601)
T ss_pred EEcCCCHHHHHHHhhhheeEEeCCCCC-cCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCcccccccccc
Confidence 8764 3344 467899999999 9985 899999999999999999999888888876 5679999984
Q ss_pred -CCCChhHHHHHHHHHh-----hC-----HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 316 -GKEGITPLAKNIVKLA-----TH-----VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 316 -~~~~~~~la~~i~~l~-----~~-----~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
.| .++|.++|++.+ ++ |..+.++.+++.+.....|||++++++|.+.|
T Consensus 540 ~~d--a~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 540 RLD--AEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred CCC--HHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 44 899999997765 22 44577888877765545799999999999987
No 94
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.79 E-value=3.5e-19 Score=137.70 Aligned_cols=133 Identities=26% Similarity=0.347 Sum_probs=96.7
Q ss_pred CeEEEEeccccccchhHHHHH-HHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcC
Q 017085 177 DLLFAIINSVSRGKGQDLFLH-SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 255 (377)
Q Consensus 177 ~~~i~~~G~~~~~Kg~~~ll~-a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~ 255 (377)
-+.|++.|++.+.|+++.+++ ++.++.+ +.|+++|+|+|.+++ ++++. ..++|+++|+.+
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~-------~~p~~~l~i~G~~~~-------~l~~~-----~~~~v~~~g~~~ 62 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKE-------KHPDIELIIIGNGPD-------ELKRL-----RRPNVRFHGFVE 62 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHH-------HSTTEEEEEECESS--------HHCCH-----HHCTEEEE-S-H
T ss_pred cccccccccccccccccchhhhHHHHHHH-------HCcCEEEEEEeCCHH-------HHHHh-----cCCCEEEcCCHH
Confidence 368899999999999999999 9987766 448999999999742 23333 125899999998
Q ss_pred CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 256 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
++.++++.||+++.|+.. .+++|++++|||++|+|||+++. +..++....+.|+++ .++ +++|+++|.++++|
T Consensus 63 e~~~~l~~~dv~l~p~~~-~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~-~~~--~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRF-NEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLV-AND--PEELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS--SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE--TT---HHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCEEEEEeeC-CCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEE-CCC--HHHHHHHHHHHhcC
Confidence 899999999999999863 67899999999999999999998 566677656677777 556 99999999999865
No 95
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.6e-16 Score=131.71 Aligned_cols=329 Identities=15% Similarity=0.114 Sum_probs=219.3
Q ss_pred hhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc------------------------chhHHHhhhccc
Q 017085 4 AFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------------------GQETINTALKAD 59 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~D 59 (377)
|..|.+.|++|.++....+.+..... ....+++.... -...+.....+|
T Consensus 33 A~Sla~~gf~VdliGy~~s~p~e~l~-------~hprI~ih~m~~l~~~~~~p~~~~l~lKvf~Qfl~Ll~aL~~~~~~~ 105 (444)
T KOG2941|consen 33 ALSLAKLGFQVDLIGYVESIPLEELL-------NHPRIRIHGMPNLPFLQGGPRVLFLPLKVFWQFLSLLWALFVLRPPD 105 (444)
T ss_pred HHHHHHcCCeEEEEEecCCCChHHHh-------cCCceEEEeCCCCcccCCCchhhhhHHHHHHHHHHHHHHHHhccCCc
Confidence 67889999999999977664333322 12233332211 112333458899
Q ss_pred EEEEcCchhhh--HHHHHhhcCCCccccceeEEeeeeccc-c----------c---chhhhccc-cccceeeeeccchhh
Q 017085 60 LIVLNTAVAGK--WLDAVLKEDVPRVLPNVLWWIHEMRGH-Y----------F---KLDYVKHL-PLVAGAMIDSHVTAE 122 (377)
Q Consensus 60 iv~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~h~~~~~-~----------~---~~~~~~~~-~~~~~~~~~s~~~~~ 122 (377)
+|.++.|..-. ++..+... + ...+.+.+-|++... . + .+.+.+++ +.++.-.|++..+.+
T Consensus 106 ~ilvQNPP~iPtliv~~~~~~-l--~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk~a~~nLcVT~AMr~ 182 (444)
T KOG2941|consen 106 IILVQNPPSIPTLIVCVLYSI-L--TGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGKLADYNLCVTKAMRE 182 (444)
T ss_pred EEEEeCCCCCchHHHHHHHHH-H--hcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhcccccchhhHHHHHH
Confidence 99999876322 22222211 1 124677777765321 0 0 01112222 577888888888877
Q ss_pred HhhhhhhhhhhccCCCeEEEEcCCh-----hh----hHHHhhh---------hhhhhhhHHHHHHHh------CCCCCCe
Q 017085 123 YWKNRTRERLRIKMPDTYVVHLGNS-----KE----LMEVAED---------NVAKRVLREHVRESL------GVRNEDL 178 (377)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~vi~ngi~-----~~----~~~~~~~---------~~~~~~~~~~~r~~~------~~~~~~~ 178 (377)
++.+ ..|+. +..|++.-.+ .+ .|.+... ...+..++..+-+++ -+++.+.
T Consensus 183 dL~q----nWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pa 256 (444)
T KOG2941|consen 183 DLIQ----NWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPERPA 256 (444)
T ss_pred HHHH----hcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCCCe
Confidence 7766 66653 5666664333 11 1222111 111111122222332 2345556
Q ss_pred EEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec-C--cC
Q 017085 179 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-K--TL 255 (377)
Q Consensus 179 ~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g-~--~~ 255 (377)
+++...++.+..++..+++|+..--+.+.+++...|.+-.+|.|.| +..+...+.+++.++. +|.+.- + .+
T Consensus 257 llvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKG-----PlkE~Y~~~I~~~~~~-~v~~~tpWL~aE 330 (444)
T KOG2941|consen 257 LLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKG-----PLKEKYSQEIHEKNLQ-HVQVCTPWLEAE 330 (444)
T ss_pred EEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCC-----chhHHHHHHHHHhccc-ceeeeecccccc
Confidence 7777788999999999999998554556666667899999999999 6888889999999886 455443 3 38
Q ss_pred CHHHHHHhcCEEEe--cCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-
Q 017085 256 TVAPYLAAIDVLVQ--NSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT- 332 (377)
Q Consensus 256 ~~~~~~~~adv~l~--ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~- 332 (377)
|...+++.||+.|+ +|.+ .-..|++++....||+||++-+...+.|++++++||++++. .+++++.+..+.+
T Consensus 331 DYP~ll~saDlGVcLHtSSS-GLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~D----s~eLa~ql~~lf~~ 405 (444)
T KOG2941|consen 331 DYPKLLASADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFED----SEELAEQLQMLFKN 405 (444)
T ss_pred cchhHhhccccceEeeecCc-ccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEecc----HHHHHHHHHHHHhc
Confidence 99999999998664 4542 56689999999999999999999999999999999999984 8999999999998
Q ss_pred ---CHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017085 333 ---HVERRLTMGKRGYERVKEIFQEHHMAERI 361 (377)
Q Consensus 333 ---~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 361 (377)
+.+.+.++.+++++. +...|+..=++.
T Consensus 406 fp~~a~~l~~lkkn~~e~--~e~RW~~~W~~~ 435 (444)
T KOG2941|consen 406 FPDNADELNQLKKNLREE--QELRWDESWERT 435 (444)
T ss_pred CCCCHHHHHHHHHhhHHH--HhhhHHHHHHHh
Confidence 888999999999885 345666554443
No 96
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.72 E-value=2.5e-15 Score=143.83 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=147.6
Q ss_pred CCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccH---HHHHHHHHHHhcCCCCcEE
Q 017085 173 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK---FESELRNYVMQKKIQDRVH 249 (377)
Q Consensus 173 ~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~---~~~~l~~~~~~~~~~~~v~ 249 (377)
++++.++++|++|+..+||.++++..+.++.+.+.+. ..+++|++.|.+.|.+.. +.+.+.+.+++...+++|.
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~---~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVv 550 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDP---ERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIV 550 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCC---CCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEE
Confidence 5567789999999999999999999999887655431 146999999998765432 3334455555445567888
Q ss_pred EecCc-CCH-HHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCC----------
Q 017085 250 FVNKT-LTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGK---------- 317 (377)
Q Consensus 250 ~~g~~-~~~-~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~---------- 317 (377)
|+..- ..+ ..++++||+.++||+...|++|++-+-||..|.+-+++--|...|.. ++.|||.+....
T Consensus 551 fle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~ 629 (778)
T cd04299 551 FLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDA 629 (778)
T ss_pred EEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcch
Confidence 87754 334 46779999999999988899999999999999999999888888887 788999998722
Q ss_pred CChhHHHHHHHHHhh----C------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 318 EGITPLAKNIVKLAT----H------VERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 318 ~~~~~la~~i~~l~~----~------~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
.|.++|.+.|++.+- + |..+.+|.+++.+.+...|||++++++|.+-|
T Consensus 630 ~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~ 687 (778)
T cd04299 630 EEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERF 687 (778)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 136777777765332 2 66788888888877777999999999998743
No 97
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.71 E-value=7.4e-15 Score=131.33 Aligned_cols=295 Identities=15% Similarity=0.111 Sum_probs=169.8
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEE-----cc-------------------chhHHHhhhc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-----AK-------------------GQETINTALK 57 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~ 57 (377)
.++++|++.||+|.+++...+-+.. .+...|+++.. .+ ....++++.+
T Consensus 20 a~a~~l~~~g~~v~~vg~~~~~e~~--------l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~k 91 (352)
T PRK12446 20 AIIPYLKEDNWDISYIGSHQGIEKT--------IIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGVMDAYVRIRKLK 91 (352)
T ss_pred HHHHHHHhCCCEEEEEECCCccccc--------cCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999966543211 11112222211 00 1224567899
Q ss_pred ccEEEEcCchhhhHHH-HHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccC
Q 017085 58 ADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM 136 (377)
Q Consensus 58 ~Div~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 136 (377)
||+||++....+.... ++...++ |++. |+... ......+...+.++.+++........ ++.
T Consensus 92 Pdvvi~~Ggy~s~p~~~aa~~~~~-----p~~i--~e~n~-~~g~~nr~~~~~a~~v~~~f~~~~~~----------~~~ 153 (352)
T PRK12446 92 PDVIFSKGGFVSVPVVIGGWLNRV-----PVLL--HESDM-TPGLANKIALRFASKIFVTFEEAAKH----------LPK 153 (352)
T ss_pred CCEEEecCchhhHHHHHHHHHcCC-----CEEE--ECCCC-CccHHHHHHHHhhCEEEEEccchhhh----------CCC
Confidence 9999999876543222 2222233 4443 43321 12233334446677776665443222 344
Q ss_pred CCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCe
Q 017085 137 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV 216 (377)
Q Consensus 137 ~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~ 216 (377)
+++.++.+++..+.... .+...++.++++++.++++.+|.- .|...+-+++.++...+. .++
T Consensus 154 ~k~~~tG~Pvr~~~~~~---------~~~~~~~~~~l~~~~~~iLv~GGS---~Ga~~in~~~~~~l~~l~------~~~ 215 (352)
T PRK12446 154 EKVIYTGSPVREEVLKG---------NREKGLAFLGFSRKKPVITIMGGS---LGAKKINETVREALPELL------LKY 215 (352)
T ss_pred CCeEEECCcCCcccccc---------cchHHHHhcCCCCCCcEEEEECCc---cchHHHHHHHHHHHHhhc------cCc
Confidence 67888888886654321 134456778888777777666643 333334444443333332 246
Q ss_pred EEEE-EecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEE
Q 017085 217 HAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 294 (377)
Q Consensus 217 ~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~ 294 (377)
++++ +|.. .+.+.+.. . .++...++. +++.++|+.||+++. -+.++++.|++++|+|.|.
T Consensus 216 ~vv~~~G~~-----~~~~~~~~----~---~~~~~~~f~~~~m~~~~~~adlvIs------r~G~~t~~E~~~~g~P~I~ 277 (352)
T PRK12446 216 QIVHLCGKG-----NLDDSLQN----K---EGYRQFEYVHGELPDILAITDFVIS------RAGSNAIFEFLTLQKPMLL 277 (352)
T ss_pred EEEEEeCCc-----hHHHHHhh----c---CCcEEecchhhhHHHHHHhCCEEEE------CCChhHHHHHHHcCCCEEE
Confidence 6654 4543 22222211 1 134556777 789999999999994 3458899999999999998
Q ss_pred eCCCC---------cccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 295 TAAGG---------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 295 s~~~~---------~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
..... ..+.+.+.+.|..+...+.+++.+++++.++++|++.+.+ ++ +++...+.++++.+++
T Consensus 278 iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~---~~-----~~~~~~~aa~~i~~~i 349 (352)
T PRK12446 278 IPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKT---AL-----KKYNGKEAIQTIIDHI 349 (352)
T ss_pred EcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHH---HH-----HHcCCCCHHHHHHHHH
Confidence 85431 2223334456666655444588999999999988875432 22 2245555566655554
Q ss_pred H
Q 017085 366 K 366 (377)
Q Consensus 366 ~ 366 (377)
.
T Consensus 350 ~ 350 (352)
T PRK12446 350 S 350 (352)
T ss_pred H
Confidence 3
No 98
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=1.7e-14 Score=127.48 Aligned_cols=260 Identities=16% Similarity=0.125 Sum_probs=166.2
Q ss_pred hHHHhhhcccEEEEcCchhhhHHH-HHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhh
Q 017085 50 ETINTALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 128 (377)
Q Consensus 50 ~~~~~~~~~Div~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 128 (377)
..++++.+||+|++.++..+.... +....++ |++.+..+... +..++...+.++.+.+.....
T Consensus 84 ~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~i-----Pv~ihEqn~~~---G~ank~~~~~a~~V~~~f~~~-------- 147 (357)
T COG0707 84 RKILKKLKPDVVIGTGGYVSGPVGIAAKLLGI-----PVIIHEQNAVP---GLANKILSKFAKKVASAFPKL-------- 147 (357)
T ss_pred HHHHHHcCCCEEEecCCccccHHHHHHHhCCC-----CEEEEecCCCc---chhHHHhHHhhceeeeccccc--------
Confidence 456688999999998876443332 3333334 55544443322 233333445555555555442
Q ss_pred hhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhh
Q 017085 129 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 208 (377)
Q Consensus 129 ~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~ 208 (377)
.-+.+.+++.+..|++..++.. .+. ...+..... ++++++.+|. ..|...+-+++.++...+.
T Consensus 148 --~~~~~~~~~~~tG~Pvr~~~~~-~~~--------~~~~~~~~~--~~~~ilV~GG---S~Ga~~ln~~v~~~~~~l~- 210 (357)
T COG0707 148 --EAGVKPENVVVTGIPVRPEFEE-LPA--------AEVRKDGRL--DKKTILVTGG---SQGAKALNDLVPEALAKLA- 210 (357)
T ss_pred --cccCCCCceEEecCcccHHhhc-cch--------hhhhhhccC--CCcEEEEECC---cchhHHHHHHHHHHHHHhh-
Confidence 2234556789999999887765 221 112222222 5666666663 3455555666655555443
Q ss_pred hcccCCCeEEEE-EecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHH
Q 017085 209 KKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 287 (377)
Q Consensus 209 ~~~~~~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a 287 (377)
.+++++. +|.+ ..+++.....+++. +.+.++.+++..+|++||+++.- +.++++.|.++
T Consensus 211 -----~~~~v~~~~G~~------~~~~~~~~~~~~~~---~~v~~f~~dm~~~~~~ADLvIsR------aGa~Ti~E~~a 270 (357)
T COG0707 211 -----NRIQVIHQTGKN------DLEELKSAYNELGV---VRVLPFIDDMAALLAAADLVISR------AGALTIAELLA 270 (357)
T ss_pred -----hCeEEEEEcCcc------hHHHHHHHHhhcCc---EEEeeHHhhHHHHHHhccEEEeC------CcccHHHHHHH
Confidence 2466654 4544 35666666666654 88999999999999999999943 34789999999
Q ss_pred cCCcEEEeCCCC--------cccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 017085 288 FQLPVLGTAAGG--------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 359 (377)
Q Consensus 288 ~g~PvI~s~~~~--------~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 359 (377)
+|+|+|.-..+. .+..+.+.+.|.+++..+.+++.+.+.|.+++++++.+.+|.+++++.. ....++
T Consensus 271 ~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~-----~p~aa~ 345 (357)
T COG0707 271 LGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG-----KPDAAE 345 (357)
T ss_pred hCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCCHHH
Confidence 999999876443 3344555667888887665689999999999999999999999987743 334444
Q ss_pred HHHHHHHH
Q 017085 360 RIAVVLKE 367 (377)
Q Consensus 360 ~~~~~~~~ 367 (377)
++.+....
T Consensus 346 ~i~~~~~~ 353 (357)
T COG0707 346 RIADLLLA 353 (357)
T ss_pred HHHHHHHH
Confidence 44444433
No 99
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.68 E-value=8e-14 Score=127.81 Aligned_cols=296 Identities=17% Similarity=0.132 Sum_probs=178.3
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-------cchhhhccccccceeeeeccchhhHhhhhh
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 128 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 128 (377)
..-|+|++|+..... +...++...+. .++.+.+|-.++.. +.....+-+-.+|.|-..+...+..|....
T Consensus 140 ~~~D~VWVhDYhL~l-lP~~LR~~~~~--~~IgfFlHiPFPs~e~fr~lP~r~eiL~glL~aDlIgFqt~~~~~nFl~~~ 216 (474)
T PF00982_consen 140 RPGDLVWVHDYHLML-LPQMLRERGPD--ARIGFFLHIPFPSSEIFRCLPWREEILRGLLGADLIGFQTFEYARNFLSCC 216 (474)
T ss_dssp -TT-EEEEESGGGTT-HHHHHHHTT----SEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcHHH-HHHHHHhhcCC--ceEeeEEecCCCCHHHHhhCCcHHHHHHHhhcCCEEEEecHHHHHHHHHHH
Confidence 456999999865443 33344444444 47888888765422 112223333477888888888887777766
Q ss_pred hhhhhcc--C-----------CCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHH
Q 017085 129 RERLRIK--M-----------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 195 (377)
Q Consensus 129 ~~~~~~~--~-----------~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~l 195 (377)
.+.+|+. . -++.+.|.|||++.+...............++++++ .+..+|+.+.|++..||+..-
T Consensus 217 ~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~--~~~~ii~gvDrld~~kGi~~k 294 (474)
T PF00982_consen 217 KRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK--GKRKIIVGVDRLDYTKGIPEK 294 (474)
T ss_dssp HHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT--T-SEEEEEE--B-GGG-HHHH
T ss_pred HHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC--CCcEEEEEeccchhhcCHHHH
Confidence 6555432 1 237889999999988765544333444566777764 234788899999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccH----HHHHHHHHHHh----cCCCC--cEEEecC-c--CCHHHHHH
Q 017085 196 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KKIQD--RVHFVNK-T--LTVAPYLA 262 (377)
Q Consensus 196 l~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~----~~~~l~~~~~~----~~~~~--~v~~~g~-~--~~~~~~~~ 262 (377)
+.|+.++++..++. ..++.|+-++.......+ +..++.+++.+ +|-.+ -|.++.. . +++..+|+
T Consensus 295 l~Afe~fL~~~P~~---~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~ 371 (474)
T PF00982_consen 295 LRAFERFLERYPEY---RGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYR 371 (474)
T ss_dssp HHHHHHHHHH-GGG---TTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHH
T ss_pred HHHHHHHHHhCcCc---cCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHH
Confidence 99999998866553 256888866653322222 34445444443 33222 2455543 2 78999999
Q ss_pred hcCEEEecCCCCCCccchHHHHHHHcCCc----EEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-CHHHH
Q 017085 263 AIDVLVQNSQAWGECFGRITIEAMAFQLP----VLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERR 337 (377)
Q Consensus 263 ~adv~l~ps~~~~e~~~~~~~Ea~a~g~P----vI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~~ 337 (377)
.||+++.+|. .+|+.++..|+.+|..+ +|.|...|..+.+.+ ..++++|.| ++++|++|.++++ .++++
T Consensus 372 ~aDv~lvTsl--rDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~--~al~VNP~d--~~~~A~ai~~AL~M~~~Er 445 (474)
T PF00982_consen 372 AADVALVTSL--RDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSE--AALLVNPWD--IEEVADAIHEALTMPPEER 445 (474)
T ss_dssp H-SEEEE--S--SBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TT--S-EEE-TT---HHHHHHHHHHHHT--HHHH
T ss_pred hhhhEEecch--hhccCCcceEEEEEecCCCCceEeeccCCHHHHcCC--ccEEECCCC--hHHHHHHHHHHHcCCHHHH
Confidence 9999999999 99999999999999876 788888888887732 348999998 9999999999999 66667
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 338 LTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 338 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
+...+..++.+ ..++...+++.+.+-++
T Consensus 446 ~~r~~~~~~~v-~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 446 KERHARLREYV-REHDVQWWAESFLRDLK 473 (474)
T ss_dssp HHHHHHHHHHH-HHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-HhCCHHHHHHHHHHHhh
Confidence 77777777766 45899999988876554
No 100
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.66 E-value=2.2e-14 Score=130.47 Aligned_cols=257 Identities=17% Similarity=0.192 Sum_probs=147.8
Q ss_pred cccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhh-hhhhhhhHHH----HHHHh----CCC-CCC
Q 017085 108 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAED-NVAKRVLREH----VRESL----GVR-NED 177 (377)
Q Consensus 108 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~-~~~~~~~~~~----~r~~~----~~~-~~~ 177 (377)
..+|.+.++|+.++.....- ++- ..=.|+|||++.+.+..... .......|+. ++..+ .++ ++.
T Consensus 220 ~~AdvFTTVSeITa~Ea~~L----L~r--~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d~t 293 (633)
T PF05693_consen 220 HYADVFTTVSEITAKEAEHL----LKR--KPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLDKT 293 (633)
T ss_dssp HHSSEEEESSHHHHHHHHHH----HSS----SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GGGE
T ss_pred HhcCeeeehhhhHHHHHHHH----hCC--CCCEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCccce
Confidence 47788999999888766642 222 23478999999887654321 1000111222 23222 233 345
Q ss_pred eEEEEeccc-cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc-----------------------------
Q 017085 178 LLFAIINSV-SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----------------------------- 227 (377)
Q Consensus 178 ~~i~~~G~~-~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~----------------------------- 227 (377)
+.|...||. -..||+|.+|+|+.+|...|+..+.+..=+-|+|+-.....
T Consensus 294 l~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~~ 373 (633)
T PF05693_consen 294 LYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGKR 373 (633)
T ss_dssp EEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777788998 45899999999999998888764311111334444332210
Q ss_pred -----------------ccH----------------------------HHHHHHHHHHhcCCC----C--cEEEecC---
Q 017085 228 -----------------QTK----------------------------FESELRNYVMQKKIQ----D--RVHFVNK--- 253 (377)
Q Consensus 228 -----------------~~~----------------------------~~~~l~~~~~~~~~~----~--~v~~~g~--- 253 (377)
.+. ..+.+...++++++. + +|+|.+.
T Consensus 374 ~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL~ 453 (633)
T PF05693_consen 374 LFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYLS 453 (633)
T ss_dssp HHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S---
T ss_pred HHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeecccc
Confidence 000 002222233333332 1 3566652
Q ss_pred ----c--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec-----Ccceeeec-CCCCCh-
Q 017085 254 ----T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN-----GTTGLLHP-VGKEGI- 320 (377)
Q Consensus 254 ----~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~-----~~~g~~~~-~~~~~~- 320 (377)
. -+..+++..||+.|+||+ +|++|.+.+|+.++|+|.|+|+..|+..++.+ ...|+.+- -.+.+.
T Consensus 454 ~~dgif~l~Y~dfv~GcdLgvFPSY--YEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~ 531 (633)
T PF05693_consen 454 GTDGIFNLDYYDFVRGCDLGVFPSY--YEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYD 531 (633)
T ss_dssp TTSSSS-S-HHHHHHHSSEEEE--S--SBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HH
T ss_pred CCCCCCCCCHHHHhccCceeeeccc--cccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHH
Confidence 1 568899999999999999 99999999999999999999999887766543 23565543 222234
Q ss_pred ---hHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 017085 321 ---TPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 373 (377)
Q Consensus 321 ---~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 373 (377)
+++++.|..... ++..+..++.++.+ +.+.++|+.+...|.+.|..++.+..
T Consensus 532 e~v~~la~~l~~f~~~~~rqri~~Rn~ae~-LS~~~dW~~~~~yY~~Ay~~AL~~a~ 587 (633)
T PF05693_consen 532 ESVNQLADFLYKFCQLSRRQRIIQRNRAER-LSDLADWKNFGKYYEKAYDLALRRAY 587 (633)
T ss_dssp HHHHHHHHHHHHHHT--HHHHHHHHHHHHH-HGGGGBHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 455555555555 56667777777755 56789999999999999998876543
No 101
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.66 E-value=1.1e-13 Score=125.21 Aligned_cols=295 Identities=11% Similarity=0.040 Sum_probs=200.8
Q ss_pred cccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-------cchhhhccccccceeeeeccchhhHhhhhhh
Q 017085 57 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 129 (377)
Q Consensus 57 ~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 129 (377)
.-|+|++|+.-... +...++...+. .++.+.+|-.++.. +.....+-+-.+|.+-..+...+..|.+...
T Consensus 123 ~~D~VWVHDYhL~l-lp~~LR~~~~~--~~IgFFlHiPFPs~eifr~LP~r~eil~glL~aDlIGFqt~~y~rnFl~~~~ 199 (474)
T PRK10117 123 DDDIIWIHDYHLLP-FASELRKRGVN--NRIGFFLHIPFPTPEIFNALPPHDELLEQLCDYDLLGFQTENDRLAFLDCLS 199 (474)
T ss_pred CCCEEEEeccHhhH-HHHHHHHhCCC--CcEEEEEeCCCCChHHHhhCCChHHHHHHHHhCccceeCCHHHHHHHHHHHH
Confidence 34899999864332 22333333333 37888888655422 1122223334666677777766666665544
Q ss_pred hhhhccC------------CCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHH
Q 017085 130 ERLRIKM------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 197 (377)
Q Consensus 130 ~~~~~~~------------~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~ 197 (377)
+.+|+.. -++.+.|.|||++.|....... .......+++.++ +..+|+.+.|++..||+..=+.
T Consensus 200 ~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~-~~~~~~~lr~~~~---~~~lilgVDRLDytKGi~~rl~ 275 (474)
T PRK10117 200 NLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGP-LPPKLAQLKAELK---NVQNIFSVERLDYSKGLPERFL 275 (474)
T ss_pred HHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhch-HHHHHHHHHHHcC---CCeEEEEecccccccCHHHHHH
Confidence 3333211 2478899999999887654322 2223455676664 4667888999999999999999
Q ss_pred HHHHHHHHHhhhcccCCCeEEEEEecCCCcc----cHHHHHHHHHHHhc----CCCC--cEEEecCc---CCHHHHHHhc
Q 017085 198 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQK----KIQD--RVHFVNKT---LTVAPYLAAI 264 (377)
Q Consensus 198 a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~----~~~~~~l~~~~~~~----~~~~--~v~~~g~~---~~~~~~~~~a 264 (377)
|++.+++...+. ..++.|+-+...+-.+ ..+..++.+.+.+. |-.+ -|+++... +++..+|+.|
T Consensus 276 Afe~fL~~~Pe~---~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~A 352 (474)
T PRK10117 276 AYEALLEKYPQH---HGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYS 352 (474)
T ss_pred HHHHHHHhChhh---cCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhc
Confidence 999988755543 2567777665433222 12344455544442 2222 14444432 7889999999
Q ss_pred CEEEecCCCCCCccchHHHHHHHcCC-----cEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-CHHHHH
Q 017085 265 DVLVQNSQAWGECFGRITIEAMAFQL-----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRL 338 (377)
Q Consensus 265 dv~l~ps~~~~e~~~~~~~Ea~a~g~-----PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~~~ 338 (377)
|+++.++. .+|+.++..|+.+|.. ++|.|...|.++.+. ..++++|.| .+++|++|.+.++ .++++.
T Consensus 353 Dv~lVTpl--RDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~---~AllVNP~d--~~~~A~Ai~~AL~Mp~~Er~ 425 (474)
T PRK10117 353 DVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYD--RDEVAAALDRALTMPLAERI 425 (474)
T ss_pred cEEEeccc--ccccccccchheeeecCCCCccEEEecccchHHHhC---CCeEECCCC--HHHHHHHHHHHHcCCHHHHH
Confidence 99999999 9999999999999976 388899888888773 368999998 9999999999999 566676
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017085 339 TMGKRGYERVKEIFQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 339 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 369 (377)
+..+..++.+ ..++...+++.+.+-+..+.
T Consensus 426 ~R~~~l~~~v-~~~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 426 SRHAEMLDVI-VKNDINHWQECFISDLKQIV 455 (474)
T ss_pred HHHHHHHHHh-hhCCHHHHHHHHHHHHHHhh
Confidence 6667777766 45899999999998777654
No 102
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.59 E-value=8.8e-15 Score=104.58 Aligned_cols=92 Identities=27% Similarity=0.263 Sum_probs=85.3
Q ss_pred EEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHH
Q 017085 266 VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 345 (377)
Q Consensus 266 v~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~ 345 (377)
++|.|+. ..+++..++|+||||+|+|+++.+++.+++.++..++.++ + ++++.+++..+++|++.+++++++++
T Consensus 1 i~Ln~~~--~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~--~--~~el~~~i~~ll~~~~~~~~ia~~a~ 74 (92)
T PF13524_consen 1 INLNPSR--SDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYN--D--PEELAEKIEYLLENPEERRRIAKNAR 74 (92)
T ss_pred CEeeCCC--CCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEEC--C--HHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3577888 7899999999999999999999999999999888888887 4 99999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHH
Q 017085 346 ERVKEIFQEHHMAERIAV 363 (377)
Q Consensus 346 ~~~~~~f~~~~~~~~~~~ 363 (377)
+.+.++|+|+..++++.+
T Consensus 75 ~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 75 ERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHhCCHHHHHHHHHC
Confidence 999999999999998863
No 103
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.58 E-value=3.3e-12 Score=125.06 Aligned_cols=296 Identities=10% Similarity=0.059 Sum_probs=201.4
Q ss_pred cEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-------cchhhhccccccceeeeeccchhhHhhhhhhhh
Q 017085 59 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRER 131 (377)
Q Consensus 59 Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 131 (377)
|+|++|+..... +...++...+. .++.+.+|-.++.. +.....+-+-.+|.|-..+...+..|.....+.
T Consensus 203 d~VWVhDYhL~l-lP~~LR~~~~~--~~IgfFlHiPFPs~eifr~LP~r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~ 279 (854)
T PLN02205 203 DFVWIHDYHLMV-LPTFLRKRFNR--VKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRM 279 (854)
T ss_pred CEEEEeCchhhH-HHHHHHhhCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEecCHHHHHHHHHHHHHH
Confidence 899999865433 23333334444 37888888765432 122233334477778888887777777665555
Q ss_pred hhccC---------------CCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHH
Q 017085 132 LRIKM---------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 196 (377)
Q Consensus 132 ~~~~~---------------~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll 196 (377)
+|+.. -++.+.|.|||++.+..............+++++++- +++.+|+.+.|++..||+..=+
T Consensus 280 lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl 358 (854)
T PLN02205 280 LGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD-QDRIMLLGVDDMDIFKGISLKL 358 (854)
T ss_pred hCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CCCEEEEEccCcccccCHHHHH
Confidence 54422 1367899999999886654433333344567777653 3567888999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCeEEEEEecCCCcc----cHHHHHHHHHHHh----cCCCC--cEEEecCc---CCHHHHHHh
Q 017085 197 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQ----KKIQD--RVHFVNKT---LTVAPYLAA 263 (377)
Q Consensus 197 ~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~----~~~~~~l~~~~~~----~~~~~--~v~~~g~~---~~~~~~~~~ 263 (377)
.|++++++..++. ..++.|+-+....... ..+..++.+.+.+ +|-.+ -|+++... +++.++|+.
T Consensus 359 ~A~e~~L~~~P~~---~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ 435 (854)
T PLN02205 359 LAMEQLLMQHPEW---QGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVV 435 (854)
T ss_pred HHHHHHHHhCccc---cCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHh
Confidence 9999987743321 1345676555432211 1233444444443 23211 25555432 789999999
Q ss_pred cCEEEecCCCCCCccchHHHHHHHcCC-------------------cEEEeCCCCcccceecCcceeeecCCCCChhHHH
Q 017085 264 IDVLVQNSQAWGECFGRITIEAMAFQL-------------------PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLA 324 (377)
Q Consensus 264 adv~l~ps~~~~e~~~~~~~Ea~a~g~-------------------PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la 324 (377)
||+++.++. .+|+.++..|+.+|.. .+|.|...|....+. ..++++|.| ++++|
T Consensus 436 ADv~lVT~l--RDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~---~Ai~VNP~d--~~~~a 508 (854)
T PLN02205 436 AECCLVTAV--RDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS---GAIRVNPWN--IDAVA 508 (854)
T ss_pred ccEEEeccc--cccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC---cCeEECCCC--HHHHH
Confidence 999999999 9999999999999864 377888777776662 368999998 99999
Q ss_pred HHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017085 325 KNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 325 ~~i~~l~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 369 (377)
++|.+.++ .+++++...+..++++ ..++...+++.+..-++++.
T Consensus 509 ~ai~~AL~m~~~Er~~R~~~~~~~v-~~~d~~~W~~~fl~~l~~~~ 553 (854)
T PLN02205 509 DAMDSALEMAEPEKQLRHEKHYRYV-STHDVGYWARSFLQDLERTC 553 (854)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHHHH
Confidence 99999999 5555665566667766 55899999999888776653
No 104
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=4.5e-12 Score=114.30 Aligned_cols=296 Identities=15% Similarity=0.122 Sum_probs=202.0
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-------cchhhhccccccceeeeeccchhhHhhhhh
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 128 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 128 (377)
..=|+|++|+.... .+...++..++.. ++.+..|-.++.. +......-+-.+|.+-..+...+..|....
T Consensus 146 ~~gDiIWVhDYhL~-L~P~mlR~~~~~~--~IgfFlHiPfPssEvfr~lP~r~eIl~gll~~dligFqt~~y~~nF~~~~ 222 (486)
T COG0380 146 EPGDIIWVHDYHLL-LVPQMLRERIPDA--KIGFFLHIPFPSSEVFRCLPWREEILEGLLGADLIGFQTESYARNFLDLC 222 (486)
T ss_pred CCCCEEEEEechhh-hhHHHHHHhCCCc--eEEEEEeCCCCCHHHHhhCchHHHHHHHhhcCCeeEecCHHHHHHHHHHH
Confidence 34499999975433 3444555566654 7888888655421 112222333466667777777766665554
Q ss_pred hhhhh-------------ccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHH
Q 017085 129 RERLR-------------IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 195 (377)
Q Consensus 129 ~~~~~-------------~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~l 195 (377)
.+..+ -...++..+|.|+|+..+.........+..-.++++.++- +..+|+.+.|++.-||+..=
T Consensus 223 ~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~--~~kiivgvDRlDy~kGi~~r 300 (486)
T COG0380 223 SRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGR--NKKLIVGVDRLDYSKGIPQR 300 (486)
T ss_pred HHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcC--CceEEEEehhcccccCcHHH
Confidence 44332 1124678899999999887655443332334555555542 36778889999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccH----HHHHHHHHHHh----cCCCC--cEEEecCc---CCHHHHHH
Q 017085 196 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQ----KKIQD--RVHFVNKT---LTVAPYLA 262 (377)
Q Consensus 196 l~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~----~~~~l~~~~~~----~~~~~--~v~~~g~~---~~~~~~~~ 262 (377)
+.|+.++++...+. ..++.++-++..+..+-+ +..+++..+.+ +|-.+ -|+++-.. +++..+|.
T Consensus 301 l~Afe~lL~~~Pe~---~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~ 377 (486)
T COG0380 301 LLAFERLLEEYPEW---RGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYR 377 (486)
T ss_pred HHHHHHHHHhChhh---hCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHh
Confidence 99999988755543 256777767665443323 23333333333 22211 24444432 78999999
Q ss_pred hcCEEEecCCCCCCccchHHHHHHHcC----CcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-CHHHH
Q 017085 263 AIDVLVQNSQAWGECFGRITIEAMAFQ----LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERR 337 (377)
Q Consensus 263 ~adv~l~ps~~~~e~~~~~~~Ea~a~g----~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~~ 337 (377)
.||+++.++. .+|+.++..|+.+|. -|.|-|...|.+..+.+ .++++|.| .++++++|.+.|+ .++++
T Consensus 378 ~aDv~lVtpl--rDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~~---AliVNP~d--~~~va~ai~~AL~m~~eEr 450 (486)
T COG0380 378 AADVMLVTPL--RDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRD---ALIVNPWD--TKEVADAIKRALTMSLEER 450 (486)
T ss_pred hhceeeeccc--cccccHHHHHHHHhhcCCCCcEEEeccccchhhhcc---CEeECCCC--hHHHHHHHHHHhcCCHHHH
Confidence 9999999999 999999999999985 47888988887777743 69999998 9999999999999 66777
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017085 338 LTMGKRGYERVKEIFQEHHMAERIAVVLKE 367 (377)
Q Consensus 338 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 367 (377)
++.-+..++.+. .++...+++.+..-+..
T Consensus 451 ~~r~~~~~~~v~-~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 451 KERHEKLLKQVL-THDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHh
Confidence 777777777664 48999999887776654
No 105
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.57 E-value=6.2e-13 Score=120.95 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=136.7
Q ss_pred cccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecccc
Q 017085 108 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 187 (377)
Q Consensus 108 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~ 187 (377)
.+.+.+++.+....+.+..++. +..++.++|-|+-.. + .... .....+++++.
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~-----~~~~~~~ip~g~i~~-~--~~~~-----------------r~~~~~l~~t~-- 290 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLD-----NEYQEQISQLGYLYP-F--KKDN-----------------KYRKQALILTN-- 290 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhC-----cccCceEEEEEEEEe-e--cccc-----------------CCcccEEEECC--
Confidence 7888999988776666665332 245677888776522 1 1100 12234455561
Q ss_pred ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcC-CHHHHHHhcCE
Q 017085 188 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-TVAPYLAAIDV 266 (377)
Q Consensus 188 ~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~-~~~~~~~~adv 266 (377)
+..|+++..|.+. .|+++|.| |.+.+ ...+|.++ .++ ++.+.+.|... ++.++|..||+
T Consensus 291 -----s~~I~~i~~Lv~~-------lPd~~f~I-ga~te----~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~dl 350 (438)
T TIGR02919 291 -----SDQIEHLEEIVQA-------LPDYHFHI-AALTE----MSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTCDI 350 (438)
T ss_pred -----HHHHHHHHHHHHh-------CCCcEEEE-EecCc----ccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhccE
Confidence 8889999988774 49999999 77642 34677777 665 55666777664 89999999999
Q ss_pred EEecCCCCCCccchHHHHHHHcCCcEEEeCCC-CcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHH
Q 017085 267 LVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 345 (377)
Q Consensus 267 ~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~-~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~ 345 (377)
+|..|. .|++++++.||+..|+|+++.+.. +..+++.+ |.+++.++ +++|+++|.+++++++..++.-..-+
T Consensus 351 yLdin~--~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~--~~~m~~~i~~lL~d~~~~~~~~~~q~ 423 (438)
T TIGR02919 351 YLDINH--GNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNE--VDQLISKLKDLLNDPNQFRELLEQQR 423 (438)
T ss_pred EEEccc--cccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCC--HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999 999999999999999999999854 45566644 78999988 99999999999999976665544444
Q ss_pred H
Q 017085 346 E 346 (377)
Q Consensus 346 ~ 346 (377)
+
T Consensus 424 ~ 424 (438)
T TIGR02919 424 E 424 (438)
T ss_pred H
Confidence 3
No 106
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.46 E-value=3.2e-11 Score=104.48 Aligned_cols=235 Identities=14% Similarity=0.143 Sum_probs=138.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccc----------hhHHHhhhcccEEEEcCch-hhh
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------QETINTALKADLIVLNTAV-AGK 70 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Div~~~~~~-~~~ 70 (377)
.||++|+++|++|++++...+.. +...+...|+.++.... ...+++..+||+|++.+.. ...
T Consensus 22 ~LA~~l~~~g~~v~f~~~~~~~~-------~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~ 94 (279)
T TIGR03590 22 TLARALHAQGAEVAFACKPLPGD-------LIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDAD 94 (279)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHH-------HHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCHH
Confidence 58999999999999999765431 23455667887765432 4456677799999998743 444
Q ss_pred HHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhh-ccCCCeEEEEcCChhh
Q 017085 71 WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR-IKMPDTYVVHLGNSKE 149 (377)
Q Consensus 71 ~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~vi~ngi~~~ 149 (377)
|...+... . +.+..+-++..+.+ .+|.++..+.. .+... ..+ .+.... +..|++.-
T Consensus 95 ~~~~~k~~-~-----~~l~~iDD~~~~~~---------~~D~vin~~~~-~~~~~-----y~~~~~~~~~--~l~G~~Y~ 151 (279)
T TIGR03590 95 WEKLIKEF-G-----RKILVIDDLADRPH---------DCDLLLDQNLG-ADASD-----YQGLVPANCR--LLLGPSYA 151 (279)
T ss_pred HHHHHHHh-C-----CeEEEEecCCCCCc---------CCCEEEeCCCC-cCHhH-----hcccCcCCCe--EEecchHH
Confidence 44433221 1 22233444321111 44655555543 22211 111 233333 33465332
Q ss_pred hHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEE-EEecCCCcc
Q 017085 150 LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQ 228 (377)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~-i~G~~~~~~ 228 (377)
...+...... +....+ ++.+.++++.|..++.+....+++++.++. .++++. ++|.+.+
T Consensus 152 ~lr~eF~~~~----~~~~~~----~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~----------~~~~i~vv~G~~~~-- 211 (279)
T TIGR03590 152 LLREEFYQLA----TANKRR----KPLRRVLVSFGGADPDNLTLKLLSALAESQ----------INISITLVTGSSNP-- 211 (279)
T ss_pred hhhHHHHHhh----Hhhhcc----cccCeEEEEeCCcCCcCHHHHHHHHHhccc----------cCceEEEEECCCCc--
Confidence 2211110000 000111 022456777787777776677777776431 344443 6777642
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC
Q 017085 229 TKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~ 298 (377)
..+++++.++.. .++.+.++++++.++|+.||+++.+ .|.++.|++++|+|+|+....
T Consensus 212 --~~~~l~~~~~~~---~~i~~~~~~~~m~~lm~~aDl~Is~-------~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 212 --NLDELKKFAKEY---PNIILFIDVENMAELMNEADLAIGA-------AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred --CHHHHHHHHHhC---CCEEEEeCHHHHHHHHHHCCEEEEC-------CchHHHHHHHcCCCEEEEEec
Confidence 456677776653 4799999999999999999999963 368999999999999987653
No 107
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=6.7e-11 Score=103.53 Aligned_cols=278 Identities=12% Similarity=0.120 Sum_probs=176.6
Q ss_pred chhHHHhhhcccEEEEcCc--hhhhHHHHHhhcCCCccccceeEEeeeecc------cccchhhhccccccceeeeeccc
Q 017085 48 GQETINTALKADLIVLNTA--VAGKWLDAVLKEDVPRVLPNVLWWIHEMRG------HYFKLDYVKHLPLVAGAMIDSHV 119 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~------~~~~~~~~~~~~~~~~~~~~s~~ 119 (377)
..+.+++..+||++++... ++..+ ..+...++ |.+.----... ...+...+..++.++.+++.|+.
T Consensus 114 ~v~rFl~~~~P~l~Ii~EtElWPnli-~e~~~~~~-----p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~ 187 (419)
T COG1519 114 AVRRFLRKWRPKLLIIMETELWPNLI-NELKRRGI-----PLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEE 187 (419)
T ss_pred HHHHHHHhcCCCEEEEEeccccHHHH-HHHHHcCC-----CEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHH
Confidence 4566777889999887642 33322 22222233 32221111111 12234455667899999999999
Q ss_pred hhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHH
Q 017085 120 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSF 199 (377)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~ 199 (377)
.++.+. .+|..+ +.+..| +-.+.-.+ ..........|.+++.+ +.+++..+. ....-+.+++++
T Consensus 188 D~~Rf~-----~LGa~~--v~v~GN-lKfd~~~~----~~~~~~~~~~r~~l~~~--r~v~iaaST--H~GEeei~l~~~ 251 (419)
T COG1519 188 DAQRFR-----SLGAKP--VVVTGN-LKFDIEPP----PQLAAELAALRRQLGGH--RPVWVAAST--HEGEEEIILDAH 251 (419)
T ss_pred HHHHHH-----hcCCcc--eEEecc-eeecCCCC----hhhHHHHHHHHHhcCCC--CceEEEecC--CCchHHHHHHHH
Confidence 988887 566544 666665 22221111 11122345677777664 556666664 223334588888
Q ss_pred HHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCC------------cEEEecC-cCCHHHHHHhcCE
Q 017085 200 YESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD------------RVHFVNK-TLTVAPYLAAIDV 266 (377)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~------------~v~~~g~-~~~~~~~~~~adv 266 (377)
+.+++ ++++..+++|-..+ +-.+.+.+++++.|+.- .=+++|. ..+|..+|..+|+
T Consensus 252 ~~l~~-------~~~~~llIlVPRHp----ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adi 320 (419)
T COG1519 252 QALKK-------QFPNLLLILVPRHP----ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADI 320 (419)
T ss_pred HHHHh-------hCCCceEEEecCCh----hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccE
Confidence 87766 66899999998875 45678888888887641 1223333 3789999999999
Q ss_pred EEecCCCCCCccchHHHHHHHcCCcEEEeC-CCCccc---ceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHH
Q 017085 267 LVQNSQAWGECFGRITIEAMAFQLPVLGTA-AGGTTE---IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 342 (377)
Q Consensus 267 ~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~-~~~~~e---~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~ 342 (377)
.++.... ..-.|..++|++++|+|||... .-...| -+...+.|+.++. .+.+++++..+++|++.+.++++
T Consensus 321 AFVGGSl-v~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~----~~~l~~~v~~l~~~~~~r~~~~~ 395 (419)
T COG1519 321 AFVGGSL-VPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVED----ADLLAKAVELLLADEDKREAYGR 395 (419)
T ss_pred EEECCcc-cCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECC----HHHHHHHHHHhcCCHHHHHHHHH
Confidence 7765331 4456889999999999999764 233333 3434445666663 78899999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 343 RGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 343 ~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
++.+.+.+ .....+++.+.++
T Consensus 396 ~~~~~v~~---~~gal~r~l~~l~ 416 (419)
T COG1519 396 AGLEFLAQ---NRGALARTLEALK 416 (419)
T ss_pred HHHHHHHH---hhHHHHHHHHHhh
Confidence 99998865 3335555555443
No 108
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.45 E-value=3.1e-11 Score=109.72 Aligned_cols=260 Identities=13% Similarity=0.030 Sum_probs=152.6
Q ss_pred HHhhh--cccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc--------------cchhh------hccc-c
Q 017085 52 INTAL--KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--------------FKLDY------VKHL-P 108 (377)
Q Consensus 52 ~~~~~--~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~--------------~~~~~------~~~~-~ 108 (377)
++++. +||+|++.+........ ...++| .+++..|+....+ +.... .+.. +
T Consensus 86 ~~~~~~~~p~~v~~~Gg~v~~~aA--~~~~~p----~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~ 159 (396)
T TIGR03492 86 ALRKWAKKGDLIVAVGDIVPLLFA--WLSGKP----YAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMRSR 159 (396)
T ss_pred HHHHHhhcCCEEEEECcHHHHHHH--HHcCCC----ceEEEeeccceeecCCCCCccchhhhccCCCccCHHHHHHhhch
Confidence 34556 99999999877632222 223443 3444445432110 01111 2333 6
Q ss_pred ccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCC-eEEEEecccc
Q 017085 109 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSVS 187 (377)
Q Consensus 109 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~i~~~G~~~ 187 (377)
.++.+++......+++.+ .| .++.++.|++-...... . + .+++++. .++++.|+-.
T Consensus 160 ~a~~v~~~~~~t~~~l~~-----~g---~k~~~vGnPv~d~l~~~-~--------~------~~l~~~~~~lllLpGSR~ 216 (396)
T TIGR03492 160 RCLAVFVRDRLTARDLRR-----QG---VRASYLGNPMMDGLEPP-E--------R------KPLLTGRFRIALLPGSRP 216 (396)
T ss_pred hhCEEeCCCHHHHHHHHH-----CC---CeEEEeCcCHHhcCccc-c--------c------cccCCCCCEEEEECCCCH
Confidence 777788888777777763 23 36888888874432210 0 0 0343443 4445555442
Q ss_pred c--cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC--------------CcEEEe
Q 017085 188 R--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ--------------DRVHFV 251 (377)
Q Consensus 188 ~--~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~--------------~~v~~~ 251 (377)
+ .++...+++++..+.+ + +++.+++.-.+. ...+.+++...+.++. +++.+.
T Consensus 217 ae~~~~lp~~l~al~~L~~-------~-~~~~~v~~~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~ 284 (396)
T TIGR03492 217 PEAYRNLKLLLRALEALPD-------S-QPFVFLAAIVPS----LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVL 284 (396)
T ss_pred HHHHccHHHHHHHHHHHhh-------C-CCeEEEEEeCCC----CCHHHHHHHHHhcCceecCCccccchhhccCceEEE
Confidence 2 3456678888876633 2 577777654222 2345566666655543 236666
Q ss_pred cCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCc---ccceecC----cceeeecCCCCChhHHH
Q 017085 252 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT---TEIVVNG----TTGLLHPVGKEGITPLA 324 (377)
Q Consensus 252 g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~---~e~~~~~----~~g~~~~~~~~~~~~la 324 (377)
.+..++.++|+.||+++..| |.+..|++++|+|+|.....+- ..+.+.. +.+..+...+ .+.++
T Consensus 285 ~~~~~~~~~l~~ADlvI~rS-------Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~--~~~l~ 355 (396)
T TIGR03492 285 LGRGAFAEILHWADLGIAMA-------GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKN--PEQAA 355 (396)
T ss_pred echHhHHHHHHhCCEEEECc-------CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCC--HHHHH
Confidence 66678999999999999765 5566999999999999863321 1222220 2334444444 89999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017085 325 KNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 361 (377)
Q Consensus 325 ~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 361 (377)
+++.++++|++.+.+|.+++++...+....+.+++.+
T Consensus 356 ~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 356 QVVRQLLADPELLERCRRNGQERMGPPGASARIAESI 392 (396)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999988888755544333334444444433
No 109
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.39 E-value=4.6e-10 Score=99.69 Aligned_cols=288 Identities=16% Similarity=0.144 Sum_probs=168.6
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEE-----------------------ccchhHHHhhhcc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-----------------------AKGQETINTALKA 58 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 58 (377)
+|+++|++++-++.++..+++. +...|+..+. .......+...+|
T Consensus 16 ~Li~~Lk~~~p~~~~~GvGG~~------------M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~p 83 (373)
T PF02684_consen 16 RLIRALKARDPDIEFYGVGGPR------------MQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKP 83 (373)
T ss_pred HHHHHHHhhCCCcEEEEEechH------------HHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5788999988888888866542 1112332211 1122333457999
Q ss_pred cEEEEcCch--hhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccC
Q 017085 59 DLIVLNTAV--AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM 136 (377)
Q Consensus 59 Div~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 136 (377)
|+|+.-+.. .......+...+.+ .|+++.+--..+.|-..+....-+..|.+++.-.+-.+++.+ .|
T Consensus 84 d~vIlID~pgFNlrlak~lk~~~~~---~~viyYI~PqvWAWr~~R~~~i~~~~D~ll~ifPFE~~~y~~-----~g--- 152 (373)
T PF02684_consen 84 DVVILIDYPGFNLRLAKKLKKRGIP---IKVIYYISPQVWAWRPGRAKKIKKYVDHLLVIFPFEPEFYKK-----HG--- 152 (373)
T ss_pred CEEEEeCCCCccHHHHHHHHHhCCC---ceEEEEECCceeeeCccHHHHHHHHHhheeECCcccHHHHhc-----cC---
Confidence 999988743 22222333333332 135555543323344445555557889999999999998884 34
Q ss_pred CCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCe-EEEEeccc-cc-cchhHHHHHHHHHHHHHHhhhcccC
Q 017085 137 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSV-SR-GKGQDLFLHSFYESLELIKEKKLEV 213 (377)
Q Consensus 137 ~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~~G~~-~~-~Kg~~~ll~a~~~l~~~l~~~~~~~ 213 (377)
-++..+.|+.-... ... ..+...++.+ ++++.+ +.+..|+= .+ .+....++++++.+.+ ++
T Consensus 153 ~~~~~VGHPl~d~~-~~~-------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~-------~~ 216 (373)
T PF02684_consen 153 VPVTYVGHPLLDEV-KPE-------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKK-------QR 216 (373)
T ss_pred CCeEEECCcchhhh-ccC-------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-------hC
Confidence 34677777763322 111 1134556666 666554 45556632 11 2334555666665544 45
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
+++++++..... ...+.+.+.....+....+... ..+-.+.|+.||+.+..| |++.+|++.+|+|.|
T Consensus 217 p~l~fvvp~a~~----~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~m~~ad~al~~S-------GTaTLE~Al~g~P~V 283 (373)
T PF02684_consen 217 PDLQFVVPVAPE----VHEELIEEILAEYPPDVSIVII--EGESYDAMAAADAALAAS-------GTATLEAALLGVPMV 283 (373)
T ss_pred CCeEEEEecCCH----HHHHHHHHHHHhhCCCCeEEEc--CCchHHHHHhCcchhhcC-------CHHHHHHHHhCCCEE
Confidence 899999877642 2333355555555443333332 357889999999998766 899999999999988
Q ss_pred EeC-C----------------CCcccceecCcc--eeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHH
Q 017085 294 GTA-A----------------GGTTEIVVNGTT--GLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 343 (377)
Q Consensus 294 ~s~-~----------------~~~~e~~~~~~~--g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~ 343 (377)
+.- . -+++.++.+... =++-+..+ ++.+++++..+++|++.+......
T Consensus 284 v~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~--~~~i~~~~~~ll~~~~~~~~~~~~ 350 (373)
T PF02684_consen 284 VAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDAT--PENIAAELLELLENPEKRKKQKEL 350 (373)
T ss_pred EEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCC--HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 641 1 233333322110 01222334 899999999999998864444333
No 110
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=99.38 E-value=6.3e-11 Score=107.03 Aligned_cols=182 Identities=18% Similarity=0.225 Sum_probs=123.3
Q ss_pred HHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-
Q 017085 167 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ- 245 (377)
Q Consensus 167 ~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~- 245 (377)
.|+.+|++++.++|+.+.++ .|=-+..+++|.++++. -|+.+|++..... ...+.+++.+.+.|+.
T Consensus 275 ~R~~~gLp~d~vvF~~fn~~--~KI~p~~l~~W~~IL~~-------vP~S~L~L~~~~~----~~~~~l~~~~~~~Gv~~ 341 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFNNL--FKISPETLDLWARILKA-------VPNSRLWLLRFPA----SGEARLRRRFAAHGVDP 341 (468)
T ss_dssp ETGGGT--SSSEEEEE-S-G--GG--HHHHHHHHHHHHH-------STTEEEEEEETST----THHHHHHHHHHHTTS-G
T ss_pred CHHHcCCCCCceEEEecCcc--ccCCHHHHHHHHHHHHh-------CCCcEEEEeeCCH----HHHHHHHHHHHHcCCCh
Confidence 48899999999988887754 57788899999998774 4899998876543 2457888889999985
Q ss_pred CcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccce-----ec-CcceeeecCCC
Q 017085 246 DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIV-----VN-GTTGLLHPVGK 317 (377)
Q Consensus 246 ~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~-----~~-~~~g~~~~~~~ 317 (377)
+++.|.+.. ++....+..+|++|-+. .-+.+++.+||+.+|+|||+-.......-+ .. |-.-+++. +
T Consensus 342 ~Ri~f~~~~~~~ehl~~~~~~DI~LDT~---p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~--s 416 (468)
T PF13844_consen 342 DRIIFSPVAPREEHLRRYQLADICLDTF---PYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD--S 416 (468)
T ss_dssp GGEEEEE---HHHHHHHGGG-SEEE--S---SS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S--S
T ss_pred hhEEEcCCCCHHHHHHHhhhCCEEeeCC---CCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC--C
Confidence 789998864 45556778899999875 456689999999999999986533222211 11 11123333 2
Q ss_pred CChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHH
Q 017085 318 EGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEV 368 (377)
Q Consensus 318 ~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~~~ 368 (377)
.+++.+.-.++.+|++.+.+++..-++...+ -|+...+++++++.|+++
T Consensus 417 --~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 417 --EEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp --HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999999988876644 399999999999999875
No 111
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=5.8e-10 Score=96.69 Aligned_cols=256 Identities=16% Similarity=0.147 Sum_probs=153.5
Q ss_pred HHHhhhcccEEEEcCchh-hhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhh
Q 017085 51 TINTALKADLIVLNTAVA-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 129 (377)
Q Consensus 51 ~~~~~~~~Div~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 129 (377)
+.+..++||++++-+... ..-+...++...|. .|+++.+.-..+.|-..+.....+.+|.+.+.-.+-..++.
T Consensus 79 ~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~--i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLailPFE~~~y~---- 152 (381)
T COG0763 79 RYILANKPDVLILIDSPDFNLRVAKKLRKAGPK--IKIIHYVSPSVWAWRPKRAVKIAKYVDHLLAILPFEPAFYD---- 152 (381)
T ss_pred HHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCC--CCeEEEECcceeeechhhHHHHHHHhhHeeeecCCCHHHHH----
Confidence 334568999999987542 22222222222322 24444444332333344445566889999999999988887
Q ss_pred hhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCe-EEEEeccccccchhHHHHHHHHHHHHHHhh
Q 017085 130 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQDLFLHSFYESLELIKE 208 (377)
Q Consensus 130 ~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~ 208 (377)
++|.+ ++.|.++.-.... . ..+++.+|++++++.+.. +.+..|+ .+--+..++..|.+..+.|++
T Consensus 153 -k~g~~---~~yVGHpl~d~i~-~-------~~~r~~ar~~l~~~~~~~~lalLPGS--R~sEI~rl~~~f~~a~~~l~~ 218 (381)
T COG0763 153 -KFGLP---CTYVGHPLADEIP-L-------LPDREAAREKLGIDADEKTLALLPGS--RRSEIRRLLPPFVQAAQELKA 218 (381)
T ss_pred -hcCCC---eEEeCChhhhhcc-c-------cccHHHHHHHhCCCCCCCeEEEecCC--cHHHHHHHHHHHHHHHHHHHh
Confidence 44543 6667666533221 1 122566999999987664 4455663 334456666666666556665
Q ss_pred hcccCCCeEEEEEecCCCcccHHHHHHHHHH-HhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHH
Q 017085 209 KKLEVPSVHAVIIGSDMNAQTKFESELRNYV-MQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 287 (377)
Q Consensus 209 ~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a 287 (377)
++++.++++--.. +..+.++... +.......+++.+ .+-.+.|.+||+.+..| |++.+|++.
T Consensus 219 ---~~~~~~~vlp~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~aD~al~aS-------GT~tLE~aL 281 (381)
T COG0763 219 ---RYPDLKFVLPLVN-----AKYRRIIEEALKWEVAGLSLILID--GEKRKAFAAADAALAAS-------GTATLEAAL 281 (381)
T ss_pred ---hCCCceEEEecCc-----HHHHHHHHHHhhccccCceEEecC--chHHHHHHHhhHHHHhc-------cHHHHHHHH
Confidence 4589999987775 2334443333 3322212333333 46778999999998766 899999999
Q ss_pred cCCcEEEe-----------------CCCCcccceecCcc--eeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHH
Q 017085 288 FQLPVLGT-----------------AAGGTTEIVVNGTT--GLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGY 345 (377)
Q Consensus 288 ~g~PvI~s-----------------~~~~~~e~~~~~~~--g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~ 345 (377)
+|+|.|++ ..-+++.++.+... -++-+... ++.++.++..+++|...+.++.+...
T Consensus 282 ~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~--pe~la~~l~~ll~~~~~~~~~~~~~~ 356 (381)
T COG0763 282 AGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCT--PENLARALEELLLNGDRREALKEKFR 356 (381)
T ss_pred hCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcC--HHHHHHHHHHHhcChHhHHHHHHHHH
Confidence 99999975 12234444432110 01112233 89999999999999865555555433
No 112
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.35 E-value=4.6e-13 Score=108.32 Aligned_cols=140 Identities=12% Similarity=-0.027 Sum_probs=77.1
Q ss_pred CcHhhHHHhcCceEEEEEecCCCcchhHh-hhhhhh---hcc-cCceEEEccchhHHHhhhcccEEEEcCchhhhHHHHH
Q 017085 1 MELAFLLRGVGTKVNWITIQKPSEEDEVI-YSLEHK---MWD-RGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAV 75 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~~~~~~~~~~-~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~ 75 (377)
++|+++|+++||||++++........... ...... ... .............++++.+||+||+|......+....
T Consensus 19 ~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~ 98 (177)
T PF13439_consen 19 LNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIALLA 98 (177)
T ss_dssp HHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcCCCeEEecccchhHHHHHh
Confidence 37899999999999999976554322110 000000 000 0000011224455667789999999986655444333
Q ss_pred hhcCCCccccceeEEeeeeccc--------c-----cchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEE
Q 017085 76 LKEDVPRVLPNVLWWIHEMRGH--------Y-----FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV 142 (377)
Q Consensus 76 ~~~~~~~~~~~~v~~~h~~~~~--------~-----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi 142 (377)
.. ..|.+++.|+.... . .........+.+|.++++|+.+++.+. ++|+++.++.||
T Consensus 99 ~~------~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~-----~~~~~~~ki~vI 167 (177)
T PF13439_consen 99 CR------KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELI-----KFGIPPEKIHVI 167 (177)
T ss_dssp HH------CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHH-----HHT--SS-EEE-
T ss_pred cc------CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHH-----HhCCcccCCEEE
Confidence 33 25899999987620 0 011122334789999999999988877 467888999999
Q ss_pred EcCChhhhH
Q 017085 143 HLGNSKELM 151 (377)
Q Consensus 143 ~ngi~~~~~ 151 (377)
|||+|.+.|
T Consensus 168 ~ngid~~~F 176 (177)
T PF13439_consen 168 YNGIDTDRF 176 (177)
T ss_dssp ---B-CCCH
T ss_pred ECCccHHHc
Confidence 999999876
No 113
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.30 E-value=1.8e-09 Score=97.29 Aligned_cols=270 Identities=14% Similarity=0.156 Sum_probs=146.5
Q ss_pred chhHHHhhhcccEEEEcCchhhhHHH--HHhhcCCCccccceeEEeeeec-c-cccchhhhcccc-ccceeeeeccchhh
Q 017085 48 GQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMR-G-HYFKLDYVKHLP-LVAGAMIDSHVTAE 122 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~h~~~-~-~~~~~~~~~~~~-~~~~~~~~s~~~~~ 122 (377)
.+..++.+.+||+|++++........ ++....+ |++ ++|+-. + .......+.... .++..+++++...+
T Consensus 84 ~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~I-----Pv~-HveaG~rs~~~~eE~~r~~i~~la~l~f~~t~~~~~ 157 (365)
T TIGR03568 84 GFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNI-----PIA-HIHGGEVTEGAIDESIRHAITKLSHLHFVATEEYRQ 157 (365)
T ss_pred HHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCC-----cEE-EEECCccCCCCchHHHHHHHHHHHhhccCCCHHHHH
Confidence 34556678999999999855222222 2222334 333 344331 1 111111223333 33455566666666
Q ss_pred HhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCC-CeEEEEecccc--ccchhHHHHHHH
Q 017085 123 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAIINSVS--RGKGQDLFLHSF 199 (377)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~i~~~G~~~--~~Kg~~~ll~a~ 199 (377)
.+. +.|.++.++.++.|..-........ ..+..+.++++++.+ +++++..-+-. .....+.+.+.+
T Consensus 158 ~L~-----~eg~~~~~i~~tG~~~iD~l~~~~~------~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li 226 (365)
T TIGR03568 158 RVI-----QMGEDPDRVFNVGSPGLDNILSLDL------LSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELL 226 (365)
T ss_pred HHH-----HcCCCCCcEEEECCcHHHHHHhhhc------cCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHH
Confidence 555 4577778888888755333222111 124677888998643 45434333321 222233333333
Q ss_pred HHHHHHHhhhcccCCCeEEEEEec-CCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCC
Q 017085 200 YESLELIKEKKLEVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 276 (377)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e 276 (377)
+.+.+ .+ .++ +++.. +.+......+.+.+.... .+++.+.++. .++..+++.|++++-.|.
T Consensus 227 ~~L~~----~~---~~~--~vi~P~~~p~~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS---- 290 (365)
T TIGR03568 227 KALDE----LN---KNY--IFTYPNADAGSRIINEAIEEYVNE---HPNFRLFKSLGQERYLSLLKNADAVIGNSS---- 290 (365)
T ss_pred HHHHH----hc---cCC--EEEEeCCCCCchHHHHHHHHHhcC---CCCEEEECCCChHHHHHHHHhCCEEEEcCh----
Confidence 33322 11 234 33322 212221234444444221 3579999975 789999999999996553
Q ss_pred ccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHH
Q 017085 277 CFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 356 (377)
Q Consensus 277 ~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 356 (377)
|. +.||.++|+|||+- +.-+|.+..+.+.+.+. .+ .+++.+++.+++ +++.+..+.. ...-|-...
T Consensus 291 --gg-i~EA~~lg~Pvv~l--~~R~e~~~~g~nvl~vg-~~--~~~I~~a~~~~~-~~~~~~~~~~-----~~~pygdg~ 356 (365)
T TIGR03568 291 --SG-IIEAPSFGVPTINI--GTRQKGRLRADSVIDVD-PD--KEEIVKAIEKLL-DPAFKKSLKN-----VKNPYGDGN 356 (365)
T ss_pred --hH-HHhhhhcCCCEEee--cCCchhhhhcCeEEEeC-CC--HHHHHHHHHHHh-ChHHHHHHhh-----CCCCCCCCh
Confidence 33 38999999999954 45777776677777663 34 899999999854 4443332211 112355555
Q ss_pred HHHHHHHH
Q 017085 357 MAERIAVV 364 (377)
Q Consensus 357 ~~~~~~~~ 364 (377)
.++++.++
T Consensus 357 as~rI~~~ 364 (365)
T TIGR03568 357 SSERIIEI 364 (365)
T ss_pred HHHHHHHh
Confidence 66666553
No 114
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.28 E-value=1.1e-09 Score=95.95 Aligned_cols=264 Identities=16% Similarity=0.125 Sum_probs=152.3
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc------------------chhHHHhhhcccEEEE
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------------GQETINTALKADLIVL 63 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~Div~~ 63 (377)
+++++|.+.||||.|.+.+.+. ....+...|++..... .+..+.++.+||++++
T Consensus 18 ~~I~eL~~~GheV~it~R~~~~--------~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is 89 (335)
T PF04007_consen 18 NIIRELEKRGHEVLITARDKDE--------TEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKPDVAIS 89 (335)
T ss_pred HHHHHHHhCCCEEEEEEeccch--------HHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCEEEe
Confidence 4688999999999999976542 2333444555443211 2234446689999999
Q ss_pred cCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEE-
Q 017085 64 NTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV- 142 (377)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi- 142 (377)
+++..+..+...+ ++ |.+.....-.. ....+..++.++.++++...-...+. .+|.. -.+.
T Consensus 90 ~~s~~a~~va~~l--gi-----P~I~f~D~e~a---~~~~~Lt~Pla~~i~~P~~~~~~~~~-----~~G~~---~~i~~ 151 (335)
T PF04007_consen 90 FGSPEAARVAFGL--GI-----PSIVFNDTEHA---IAQNRLTLPLADVIITPEAIPKEFLK-----RFGAK---NQIRT 151 (335)
T ss_pred cCcHHHHHHHHHh--CC-----CeEEEecCchh---hccceeehhcCCeeECCcccCHHHHH-----hcCCc---CCEEE
Confidence 8766544333322 33 55554442211 11233356788888888876655544 44532 2344
Q ss_pred EcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecccccc-----chhHHHHHHHHHHHHHHhhhcccCCCeE
Q 017085 143 HLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG-----KGQDLFLHSFYESLELIKEKKLEVPSVH 217 (377)
Q Consensus 143 ~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~-----Kg~~~ll~a~~~l~~~l~~~~~~~~~~~ 217 (377)
++|++...+-....+ ..++.+.+|+++++++++ |..+. +|-..++ .++.+.|++. .+.
T Consensus 152 y~G~~E~ayl~~F~P------d~~vl~~lg~~~~~yIvv---R~~~~~A~y~~~~~~i~---~~ii~~L~~~----~~~- 214 (335)
T PF04007_consen 152 YNGYKELAYLHPFKP------DPEVLKELGLDDEPYIVV---RPEAWKASYDNGKKSIL---PEIIEELEKY----GRN- 214 (335)
T ss_pred ECCeeeEEeecCCCC------ChhHHHHcCCCCCCEEEE---EeccccCeeecCccchH---HHHHHHHHhh----Cce-
Confidence 678765432221111 256788999876665543 33332 2222222 2223344432 333
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
++++....+ . . ...+++ ++.+....-+..+++.-||+++- + .|+...||..+|+|.|.+-.
T Consensus 215 vV~ipr~~~----~-~---~~~~~~----~~~i~~~~vd~~~Ll~~a~l~Ig------~-ggTMa~EAA~LGtPaIs~~~ 275 (335)
T PF04007_consen 215 VVIIPRYED----Q-R---ELFEKY----GVIIPPEPVDGLDLLYYADLVIG------G-GGTMAREAALLGTPAISCFP 275 (335)
T ss_pred EEEecCCcc----h-h---hHHhcc----CccccCCCCCHHHHHHhcCEEEe------C-CcHHHHHHHHhCCCEEEecC
Confidence 566655421 1 1 122322 25566555567799999999983 3 37889999999999998754
Q ss_pred C---CcccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 298 G---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 298 ~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
| +..+++. +.|++....| ++++.+.+.+.+
T Consensus 276 g~~~~vd~~L~--~~Gll~~~~~--~~ei~~~v~~~~ 308 (335)
T PF04007_consen 276 GKLLAVDKYLI--EKGLLYHSTD--PDEIVEYVRKNL 308 (335)
T ss_pred CcchhHHHHHH--HCCCeEecCC--HHHHHHHHHHhh
Confidence 3 3344443 3688888877 888888666544
No 115
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1e-09 Score=98.91 Aligned_cols=188 Identities=14% Similarity=0.206 Sum_probs=135.7
Q ss_pred HHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC-CC
Q 017085 168 RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QD 246 (377)
Q Consensus 168 r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~-~~ 246 (377)
|.++|+|++.++++++++ ..|-...+...+.++++ .-|+-.|++.|.|.+ +.....+++.+++.|+ .+
T Consensus 421 R~~lglp~~avVf~c~~n--~~K~~pev~~~wmqIL~-------~vP~Svl~L~~~~~~--~~~~~~l~~la~~~Gv~~e 489 (620)
T COG3914 421 RAQLGLPEDAVVFCCFNN--YFKITPEVFALWMQILS-------AVPNSVLLLKAGGDD--AEINARLRDLAEREGVDSE 489 (620)
T ss_pred hhhcCCCCCeEEEEecCC--cccCCHHHHHHHHHHHH-------hCCCcEEEEecCCCc--HHHHHHHHHHHHHcCCChh
Confidence 778999999998888874 56777888888888766 448999999988733 2578899999999998 47
Q ss_pred cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC-----Ccccceec-CcceeeecCCCC
Q 017085 247 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-----GTTEIVVN-GTTGLLHPVGKE 318 (377)
Q Consensus 247 ~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~-----~~~e~~~~-~~~g~~~~~~~~ 318 (377)
+++|.+.. ++..+.|..||+++-+. ..+.+++.+||+.||+|||+---. ....++.+ |..-+++..
T Consensus 490 RL~f~p~~~~~~h~a~~~iADlvLDTy---PY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s--- 563 (620)
T COG3914 490 RLRFLPPAPNEDHRARYGIADLVLDTY---PYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADS--- 563 (620)
T ss_pred heeecCCCCCHHHHHhhchhheeeecc---cCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCC---
Confidence 89999976 66788999999999765 566789999999999999974211 01112211 111122221
Q ss_pred ChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHhccc
Q 017085 319 GITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVLKKSK 373 (377)
Q Consensus 319 ~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~ 373 (377)
.++..+.-..+-.|...+.+.+..-...... -|+.+..+++++.+|.++.++..
T Consensus 564 -~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 564 -RADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred -HHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHHHhhc
Confidence 5667666667767776665554443332222 48999999999999999987653
No 116
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.20 E-value=3.6e-09 Score=97.05 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=78.4
Q ss_pred CCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC----cccceecCcceeeecCCCCC
Q 017085 244 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEG 319 (377)
Q Consensus 244 ~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~ 319 (377)
+++++.+.++... .++|..||++|..+ ...++.||+++|+|+|+....+ +...+.+.+.|..+...+.+
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hg------G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~ 345 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHG------GMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVT 345 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECC------CchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCC
Confidence 3578999998754 48999999999533 2458999999999999975332 33344455677777654434
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 320 ITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 320 ~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
.++++++|.++++|++.++.+.+- .+.+...-..+..++.+++++
T Consensus 346 ~~~l~~ai~~~l~~~~~~~~~~~l-~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 346 AEKLREAVLAVLSDPRYAERLRKM-RAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHhh
Confidence 789999999999998755555333 333444456666666665543
No 117
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.20 E-value=2.3e-09 Score=98.68 Aligned_cols=92 Identities=17% Similarity=0.065 Sum_probs=67.6
Q ss_pred CCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC----cccceecCcceeeecCCCC
Q 017085 243 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKE 318 (377)
Q Consensus 243 ~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~ 318 (377)
..+++|.+.++. ....+|..||++|. .|...++.||+++|+|+|+....+ ..+.+...+.|......+.
T Consensus 285 ~~~~~v~~~~~~-p~~~ll~~~d~~I~------hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~ 357 (401)
T cd03784 285 DLPDNVRVVDFV-PHDWLLPRCAAVVH------HGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPREL 357 (401)
T ss_pred CCCCceEEeCCC-CHHHHhhhhheeee------cCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccC
Confidence 446799999997 57789999999993 334679999999999999986543 3445555567777765433
Q ss_pred ChhHHHHHHHHHhhCHHHHHHHHH
Q 017085 319 GITPLAKNIVKLATHVERRLTMGK 342 (377)
Q Consensus 319 ~~~~la~~i~~l~~~~~~~~~~~~ 342 (377)
+.+++++++.++++++ .+.+...
T Consensus 358 ~~~~l~~al~~~l~~~-~~~~~~~ 380 (401)
T cd03784 358 TAERLAAALRRLLDPP-SRRRAAA 380 (401)
T ss_pred CHHHHHHHHHHHhCHH-HHHHHHH
Confidence 4899999999999854 3444333
No 118
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.13 E-value=7.5e-08 Score=89.52 Aligned_cols=253 Identities=9% Similarity=0.045 Sum_probs=143.0
Q ss_pred HHHhhhcccEEEEcCch-hhhHHH-HHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhh
Q 017085 51 TINTALKADLIVLNTAV-AGKWLD-AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 128 (377)
Q Consensus 51 ~~~~~~~~Div~~~~~~-~~~~~~-~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 128 (377)
+....++||++++-+.. -...+. .+.+.++ ..|+++.+--....|-..+..+..+..|.+++.-.+-.+++++
T Consensus 304 ~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi---~ipviyYVsPqVWAWR~~Rikki~k~vD~ll~IfPFE~~~y~~-- 378 (608)
T PRK01021 304 KTILKTNPRTVICIDFPDFHFLLIKKLRKRGY---KGKIVHYVCPSIWAWRPKRKTILEKYLDLLLLILPFEQNLFKD-- 378 (608)
T ss_pred HHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCC---CCCEEEEECccceeeCcchHHHHHHHhhhheecCccCHHHHHh--
Confidence 33456899999997643 222222 2222221 1255555543333444455556667889999999999998874
Q ss_pred hhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCC-CeEEEEeccc-cc-cchhHHHHHHHHHHHHH
Q 017085 129 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAIINSV-SR-GKGQDLFLHSFYESLEL 205 (377)
Q Consensus 129 ~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~i~~~G~~-~~-~Kg~~~ll~a~~~l~~~ 205 (377)
.| -+++.+.|+.-.. ... ..++.+.|+++|++++ ..+-+..|+= .+ .+....++++++. +.
T Consensus 379 ---~g---v~v~yVGHPL~d~-i~~-------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~--~~ 442 (608)
T PRK01021 379 ---SP---LRTVYLGHPLVET-ISS-------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLA--SS 442 (608)
T ss_pred ---cC---CCeEEECCcHHhh-ccc-------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH--HH
Confidence 34 3466777765222 111 1124567889999755 4555666742 11 2333444555440 02
Q ss_pred HhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHH
Q 017085 206 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 285 (377)
Q Consensus 206 l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea 285 (377)
++ ++.++++..... ...+.+++..+..++ -.+.+... ++-.++|++||+.+..| |++.+|+
T Consensus 443 l~------~~l~fvvp~a~~----~~~~~i~~~~~~~~~-~~~~ii~~-~~~~~~m~aaD~aLaaS-------GTaTLEa 503 (608)
T PRK01021 443 LA------STHQLLVSSANP----KYDHLILEVLQQEGC-LHSHIVPS-QFRYELMRECDCALAKC-------GTIVLET 503 (608)
T ss_pred hc------cCeEEEEecCch----hhHHHHHHHHhhcCC-CCeEEecC-cchHHHHHhcCeeeecC-------CHHHHHH
Confidence 22 357777654331 234556666554331 02333322 13479999999999776 8999999
Q ss_pred HHcCCcEEEe-CCC------------------CcccceecCc--ceee--ecCCCCChhHHHHHHHHHhhCHHHHHHHHH
Q 017085 286 MAFQLPVLGT-AAG------------------GTTEIVVNGT--TGLL--HPVGKEGITPLAKNIVKLATHVERRLTMGK 342 (377)
Q Consensus 286 ~a~g~PvI~s-~~~------------------~~~e~~~~~~--~g~~--~~~~~~~~~~la~~i~~l~~~~~~~~~~~~ 342 (377)
+.+|+|.|+. ..+ +++.++.+.. -=++ -+..+ ++.+++++ ++++|++.++++.+
T Consensus 504 AL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~t--pe~La~~l-~lL~d~~~r~~~~~ 580 (608)
T PRK01021 504 ALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQ--PEEVAAAL-DILKTSQSKEKQKD 580 (608)
T ss_pred HHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCC--HHHHHHHH-HHhcCHHHHHHHHH
Confidence 9999999874 222 2222222110 0011 02223 89999996 88888887776666
Q ss_pred HHHH
Q 017085 343 RGYE 346 (377)
Q Consensus 343 ~~~~ 346 (377)
...+
T Consensus 581 ~l~~ 584 (608)
T PRK01021 581 ACRD 584 (608)
T ss_pred HHHH
Confidence 5544
No 119
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.12 E-value=4.7e-08 Score=87.24 Aligned_cols=315 Identities=12% Similarity=0.048 Sum_probs=157.9
Q ss_pred hHHHhc-CceEEEEEecCCCcchhHhhhhhhhhcccCceEEE--------------ccchhHHHhhhcccEEEEcCchhh
Q 017085 5 FLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--------------AKGQETINTALKADLIVLNTAVAG 69 (377)
Q Consensus 5 ~~L~~~-G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~Div~~~~~~~~ 69 (377)
++|++. ++++.++..+......... .+...+.-..+.+.. ...+..++...+||+|++++-...
T Consensus 1 ~~l~~~~~~~~~li~tG~H~~~~~g~-~~~~~f~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~ 79 (346)
T PF02350_consen 1 KALQKDPGFELILIVTGQHLDPEMGD-TFFEGFGIPKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDRNE 79 (346)
T ss_dssp -HHHCSTTEEEEEEEECSS--CHHHH-HHHHHTT--SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHH
T ss_pred ChhhhCCCCCEEEEEeCCCCCHHHHH-HHHhhCCCCCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCch
Confidence 467766 8999999877662221111 111111111111111 113455667799999999986644
Q ss_pred hHHHHHhhcCCCccccceeEEeeee-ccc-----ccchhhhccc-cccceeeeeccchhhHhhhhhhhhhhccCCCeEEE
Q 017085 70 KWLDAVLKEDVPRVLPNVLWWIHEM-RGH-----YFKLDYVKHL-PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV 142 (377)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~v~~~h~~-~~~-----~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi 142 (377)
.+..++..... ..| +.++|+- ++. ......+..+ +.++..++.++...+.+. +.|.++.++.++
T Consensus 80 ~la~alaA~~~---~ip-v~HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t~~~~~~L~-----~~G~~~~rI~~v 150 (346)
T PF02350_consen 80 ALAAALAAFYL---NIP-VAHIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPTEEARERLL-----QEGEPPERIFVV 150 (346)
T ss_dssp HHHHHHHHHHT---T-E-EEEES-----S-TTSSTTHHHHHHHHHHH-SEEEESSHHHHHHHH-----HTT--GGGEEE-
T ss_pred HHHHHHHHHHh---CCC-EEEecCCCCccccCCCCchhhhhhhhhhhhhhhccCCHHHHHHHH-----hcCCCCCeEEEE
Confidence 44333332211 124 4444432 111 2222333444 455666777777776666 568888999999
Q ss_pred EcCChhhhHHHhhhhhhhhhhHHHHHHHh-CCCCCCeEEEEecccccc---chhHHHHHHHHHHHHHHhhhcccCCCeEE
Q 017085 143 HLGNSKELMEVAEDNVAKRVLREHVRESL-GVRNEDLLFAIINSVSRG---KGQDLFLHSFYESLELIKEKKLEVPSVHA 218 (377)
Q Consensus 143 ~ngi~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~i~~~G~~~~~---Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l 218 (377)
.|..-........... .......+ ....++++++..=+.... .....+.+++..+.+ . +++.+
T Consensus 151 G~~~~D~l~~~~~~~~-----~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~-------~-~~~~v 217 (346)
T PF02350_consen 151 GNPGIDALLQNKEEIE-----EKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALAE-------R-QNVPV 217 (346)
T ss_dssp --HHHHHHHHHHHTTC-----C-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHH-------H-TTEEE
T ss_pred ChHHHHHHHHhHHHHh-----hhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHh-------c-CCCcE
Confidence 8865333322111110 00001111 113455555544333222 234455555554433 1 57888
Q ss_pred EEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHH-HHHHcCCcEEEe
Q 017085 219 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITI-EAMAFQLPVLGT 295 (377)
Q Consensus 219 ~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~-Ea~a~g~PvI~s 295 (377)
++.....+ ...+.+.+.+.++ +++++..+. .++..+++.|+++|--| | .+. ||..+|+|||.-
T Consensus 218 i~~~hn~p---~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdS-------s-GI~eEa~~lg~P~v~i 283 (346)
T PF02350_consen 218 IFPLHNNP---RGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDS-------S-GIQEEAPSLGKPVVNI 283 (346)
T ss_dssp EEE--S-H---HHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESS-------H-HHHHHGGGGT--EEEC
T ss_pred EEEecCCc---hHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcC-------c-cHHHHHHHhCCeEEEe
Confidence 88877543 3556666666655 289999875 78899999999998544 3 466 999999999998
Q ss_pred C-CCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 296 A-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 296 ~-~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
. .|.-++....+.+ .++. .+ .+++.+++.+++++++.+.++.. ...-|--.+.++++.+++
T Consensus 284 R~~geRqe~r~~~~n-vlv~-~~--~~~I~~ai~~~l~~~~~~~~~~~-----~~npYgdG~as~rI~~~L 345 (346)
T PF02350_consen 284 RDSGERQEGRERGSN-VLVG-TD--PEAIIQAIEKALSDKDFYRKLKN-----RPNPYGDGNASERIVEIL 345 (346)
T ss_dssp SSS-S-HHHHHTTSE-EEET-SS--HHHHHHHHHHHHH-HHHHHHHHC-----S--TT-SS-HHHHHHHHH
T ss_pred cCCCCCHHHHhhcce-EEeC-CC--HHHHHHHHHHHHhChHHHHhhcc-----CCCCCCCCcHHHHHHHhh
Confidence 4 5666666655544 4455 44 99999999999988554444322 112355555666666654
No 120
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=1.4e-07 Score=82.36 Aligned_cols=276 Identities=17% Similarity=0.186 Sum_probs=163.8
Q ss_pred chhHHHhhhcccEEEEcCchhhhHHHHH--hhcCCCccccceeEEeeeecc--cccchhhhc-cc-cccceeeeeccchh
Q 017085 48 GQETINTALKADLIVLNTAVAGKWLDAV--LKEDVPRVLPNVLWWIHEMRG--HYFKLDYVK-HL-PLVAGAMIDSHVTA 121 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~h~~~~--~~~~~~~~~-~~-~~~~~~~~~s~~~~ 121 (377)
.+..++.+.+||+|.+|+-+...+..++ +...+ |+.-.--+.+. .++.....+ .. ..++..++++...+
T Consensus 83 ~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~I-----pV~HvEAGlRt~~~~~PEE~NR~l~~~~S~~hfapte~ar 157 (383)
T COG0381 83 GLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKI-----PVGHVEAGLRTGDLYFPEEINRRLTSHLSDLHFAPTEIAR 157 (383)
T ss_pred HHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCC-----ceEEEecccccCCCCCcHHHHHHHHHHhhhhhcCChHHHH
Confidence 4456677899999999987644443222 22233 22221222211 112222122 22 34566677777777
Q ss_pred hHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHH-hCCCCCCeEEEEeccccc-cchhHHHHHHH
Q 017085 122 EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRES-LGVRNEDLLFAIINSVSR-GKGQDLFLHSF 199 (377)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~i~~~G~~~~-~Kg~~~ll~a~ 199 (377)
+++. +-|.+.+++.|+.|.+-........ ... ........ +....++++++..=|-.. .+++..+++++
T Consensus 158 ~nLl-----~EG~~~~~IfvtGnt~iDal~~~~~-~~~---~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al 228 (383)
T COG0381 158 KNLL-----REGVPEKRIFVTGNTVIDALLNTRD-RVL---EDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEAL 228 (383)
T ss_pred HHHH-----HcCCCccceEEeCChHHHHHHHHHh-hhc---cchhhHHhhhccccCcEEEEEcchhhcccccHHHHHHHH
Confidence 7666 5688888999999976333222111 000 01111222 444444566555544322 37788888888
Q ss_pred HHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHH-HhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCC
Q 017085 200 YESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV-MQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 276 (377)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~-~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e 276 (377)
.++.+ +++++.++.--... ..++... ..++-.++|+++.+. .+...++..|-+++--|
T Consensus 229 ~~i~~-------~~~~~~viyp~H~~-------~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS----- 289 (383)
T COG0381 229 REIAE-------EYPDVIVIYPVHPR-------PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS----- 289 (383)
T ss_pred HHHHH-------hCCCceEEEeCCCC-------hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-----
Confidence 87766 34676665544431 2333333 455656679999886 67788888887666333
Q ss_pred ccchHHHHHHHcCCcEEEeC-CCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHH
Q 017085 277 CFGRITIEAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 355 (377)
Q Consensus 277 ~~~~~~~Ea~a~g~PvI~s~-~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 355 (377)
|...=||-..|+||++-. ...-+|.+..| .-.++.. + .+.+.+++..++++++.+++|+....- |.-.
T Consensus 290 --GgiqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg~-~--~~~i~~~~~~ll~~~~~~~~m~~~~np-----Ygdg 358 (383)
T COG0381 290 --GGIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVGT-D--EENILDAATELLEDEEFYERMSNAKNP-----YGDG 358 (383)
T ss_pred --CchhhhHHhcCCcEEeeccCCCCccceecC-ceEEeCc-c--HHHHHHHHHHHhhChHHHHHHhcccCC-----CcCc
Confidence 556789999999999875 55677776544 3344443 3 799999999999999999888765433 4444
Q ss_pred HHHHHHHHHHHH
Q 017085 356 HMAERIAVVLKE 367 (377)
Q Consensus 356 ~~~~~~~~~~~~ 367 (377)
...+++.+++..
T Consensus 359 ~as~rIv~~l~~ 370 (383)
T COG0381 359 NASERIVEILLN 370 (383)
T ss_pred chHHHHHHHHHH
Confidence 455555555443
No 121
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.07 E-value=2.8e-10 Score=90.19 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=66.8
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc---------------cchhHHH--hhhcccEEEEc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA---------------KGQETIN--TALKADLIVLN 64 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~--~~~~~Div~~~ 64 (377)
+|+++|.++||+|++++......... ....++.+... ..+..++ ...+||+||+|
T Consensus 9 ~l~~~L~~~G~~V~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~~ 80 (160)
T PF13579_consen 9 ELARALAARGHEVTVVTPQPDPEDDE--------EEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHAH 80 (160)
T ss_dssp HHHHHHHHTT-EEEEEEE---GGG-S--------EEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEEE
T ss_pred HHHHHHHHCCCEEEEEecCCCCcccc--------cccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEec
Confidence 68999999999999999766543211 22234444221 1223344 66899999999
Q ss_pred CchhhhHHHHHhhcCCCccccceeEEeeeecccc--------cchhhhccccccceeeeeccchhhHhhhhhhhhhhccC
Q 017085 65 TAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM 136 (377)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 136 (377)
++..+. +..++. .....|++.+.|+..... +.......++.+|.++++|+...+.+. .+|+++
T Consensus 81 ~~~~~~-~~~~~~---~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~-----~~g~~~ 151 (160)
T PF13579_consen 81 SPTAGL-VAALAR---RRRGIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLR-----RYGVPP 151 (160)
T ss_dssp HHHHHH-HHHHHH---HHHT--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHH-----HH---G
T ss_pred ccchhH-HHHHHH---HccCCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHH-----HhCCCC
Confidence 855332 222222 112358999999854221 111223556789999999999988877 467888
Q ss_pred CCeEEEEcC
Q 017085 137 PDTYVVHLG 145 (377)
Q Consensus 137 ~~~~vi~ng 145 (377)
+++.|||||
T Consensus 152 ~ri~vipnG 160 (160)
T PF13579_consen 152 DRIHVIPNG 160 (160)
T ss_dssp GGEEE----
T ss_pred CcEEEeCcC
Confidence 999999998
No 122
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.01 E-value=2e-08 Score=89.38 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=83.1
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
+.+.+++++|..... .++++++.+ ++..++++|..... . -.++|++.++.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~-----------~~~~~~v~g~~~~~-----~----------~~~ni~~~~~~ 240 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKAL-----------PDYQFIVFGPNAAD-----P----------RPGNIHVRPFS 240 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhC-----------CCCeEEEEcCCccc-----c----------cCCCEEEeecC
Confidence 456788888876543 556665532 77899988775210 0 04689999987
Q ss_pred -CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCccc------ceecCcceeeecCCCCChhHHHHHH
Q 017085 255 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE------IVVNGTTGLLHPVGKEGITPLAKNI 327 (377)
Q Consensus 255 -~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e------~~~~~~~g~~~~~~~~~~~~la~~i 327 (377)
.++.++|+.||+++..+ .-+++.|++++|+|+|+-...+..| .+++.+.|..++..+-+.+.|+++|
T Consensus 241 ~~~~~~~m~~ad~vIs~~------G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l 314 (318)
T PF13528_consen 241 TPDFAELMAAADLVISKG------GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFL 314 (318)
T ss_pred hHHHHHHHHhCCEEEECC------CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHH
Confidence 89999999999999432 3456999999999999987654333 2333456666655443478888887
Q ss_pred HHH
Q 017085 328 VKL 330 (377)
Q Consensus 328 ~~l 330 (377)
+++
T Consensus 315 ~~~ 317 (318)
T PF13528_consen 315 ERL 317 (318)
T ss_pred hcC
Confidence 653
No 123
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.96 E-value=2.5e-07 Score=78.33 Aligned_cols=270 Identities=10% Similarity=0.065 Sum_probs=158.8
Q ss_pred hhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccc----ccchh-----hhccccccceeeeeccchhhHhh
Q 017085 55 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH----YFKLD-----YVKHLPLVAGAMIDSHVTAEYWK 125 (377)
Q Consensus 55 ~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~----~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~ 125 (377)
..+.+-+++|+.+......+++...++. .++.|++.+..-. .++.+ .+...+++.++++ ......++.
T Consensus 37 ~~r~~rff~HGqFn~~lwlall~g~~~~--~q~yWhiWGaDLYe~~~~lk~rlfy~lRR~aq~rvg~v~a-trGD~~~~a 113 (322)
T PRK02797 37 ANRAQRFFLHGQFNPTLWLALLSGKIKP--KQFYWHIWGADLYEESKGLKFRLFYPLRRLAQKRVGHVFA-TRGDLSYFA 113 (322)
T ss_pred hCccceEEEecCCCHHHHHHHHhCCcCc--cceEEEEEChhhhhcccchhHHHHHHHHHHHHhhcCeEEE-ecchHHHHH
Confidence 4778889999877444333333333332 3677776654211 01111 1223357778888 555555544
Q ss_pred hhhhhhhhccCCCeEEEEcCChhhhH-HHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHH
Q 017085 126 NRTRERLRIKMPDTYVVHLGNSKELM-EVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLE 204 (377)
Q Consensus 126 ~~~~~~~~~~~~~~~vi~ngi~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~ 204 (377)
+. .++++.. . ++.+...+.. .....+ .-+.++++|+...+-++.-++..+++++.+...
T Consensus 114 ~~---~~~v~~~-l--lyfpt~m~~~l~~~~~~--------------~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~ 173 (322)
T PRK02797 114 QR---HPKVPGS-L--LYFPTRMDPSLNTMAND--------------RQRAGKMTILVGNSGDRSNRHIEALRALHQQFG 173 (322)
T ss_pred Hh---cCCCCcc-E--EecCCcchhhhcccccc--------------ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhC
Confidence 32 4555543 3 3333222211 110000 001345566543334667778777777765422
Q ss_pred HHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc---CCHHHHHHhcCEEEecCCCCCCccchH
Q 017085 205 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRI 281 (377)
Q Consensus 205 ~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~---~~~~~~~~~adv~l~ps~~~~e~~~~~ 281 (377)
.++++++.=+=+..+..|.+++++..+++--.+++..+-.. ++..++++.||+.++...- .+|.|+.
T Consensus 174 ---------~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~R-QQgiGnl 243 (322)
T PRK02797 174 ---------DNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFAR-QQGIGTL 243 (322)
T ss_pred ---------CCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeech-hhHHhHH
Confidence 77888876443323347999999999988765788877653 8899999999999887653 7888865
Q ss_pred HHHHHHcCCcEEEeC-CCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 017085 282 TIEAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 360 (377)
Q Consensus 282 ~~Ea~a~g~PvI~s~-~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 360 (377)
++ .+.+|+||+.+. ++-..++.+.+ .-+++...+-|...+.+ ..+++....++.+. |+.++..+.
T Consensus 244 ~l-Li~~G~~v~l~r~n~fwqdl~e~g-v~Vlf~~d~L~~~~v~e----------~~rql~~~dk~~I~--Ff~pn~~~~ 309 (322)
T PRK02797 244 CL-LIQLGKPVVLSRDNPFWQDLTEQG-LPVLFTGDDLDEDIVRE----------AQRQLASVDKNIIA--FFSPNYLQG 309 (322)
T ss_pred HH-HHHCCCcEEEecCCchHHHHHhCC-CeEEecCCcccHHHHHH----------HHHHHHhhCcceee--ecCHhHHHH
Confidence 55 899999999985 66677766444 33434433311222222 12233333344443 999999999
Q ss_pred HHHHHHHHHhc
Q 017085 361 IAVVLKEVLKK 371 (377)
Q Consensus 361 ~~~~~~~~~~~ 371 (377)
|.++++....+
T Consensus 310 W~~~l~~~~g~ 320 (322)
T PRK02797 310 WRNALAIAAGE 320 (322)
T ss_pred HHHHHHHhhCC
Confidence 99999876554
No 124
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.93 E-value=1.5e-07 Score=83.83 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=57.7
Q ss_pred CCcEEEecCc-CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCccc------ceecCcceeeecCCC
Q 017085 245 QDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE------IVVNGTTGLLHPVGK 317 (377)
Q Consensus 245 ~~~v~~~g~~-~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e------~~~~~~~g~~~~~~~ 317 (377)
++++.+.++. +++.++|..||+++.-+ ...++.||+++|+|+|.....+..| .+.+.+.|...+..+
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~vI~~~------G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~ 301 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAELVITHG------GFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKE 301 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCEEEECC------ChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhh
Confidence 4689999987 58999999999999644 2357999999999999988765333 344456777777655
Q ss_pred CChhHHHHHHHHHhhCH
Q 017085 318 EGITPLAKNIVKLATHV 334 (377)
Q Consensus 318 ~~~~~la~~i~~l~~~~ 334 (377)
. ++.+++...++++
T Consensus 302 --~-~~~~~~~~~~~~~ 315 (321)
T TIGR00661 302 --L-RLLEAILDIRNMK 315 (321)
T ss_pred --H-HHHHHHHhccccc
Confidence 4 4444554444443
No 125
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.82 E-value=6.3e-07 Score=81.52 Aligned_cols=282 Identities=12% Similarity=0.157 Sum_probs=137.2
Q ss_pred ccCceEEEccchhHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccch----------hhhccc
Q 017085 38 DRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL----------DYVKHL 107 (377)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~----------~~~~~~ 107 (377)
..+.+++.......+....+.+++++++....... .......+++..-|+..-..+.. ......
T Consensus 59 ~~~~~~v~~~s~~~~~~~~~Ak~~i~~~~~~~~~~------~~~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~~~~~~~ 132 (369)
T PF04464_consen 59 PKGIKVVKFGSLKHIYYLARAKYIISDSYFPDLIY------FKKRKNQKYIQLWHGIPLKKIGYDSPDNKNYRKNYKRNY 132 (369)
T ss_dssp -SS-EEEETTSHHHHHHHHHEEEEEESS---T--T------S---TTSEEEE--SS--SB--GGG-S---TS-HHHHHHH
T ss_pred cCCceEEeecHHHHHHHHHhCcEEEECCCCCcccc------cccCCCcEEEEecCCCcccccchhccccccchhhhhhhc
Confidence 45667777777777776777888888743322110 11122357888888872111111 233445
Q ss_pred cccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecccc
Q 017085 108 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 187 (377)
Q Consensus 108 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~ 187 (377)
...|.+++.|+...+.+.+ .++.+..++ +..|.+....-..... ..++.+++.++++.++.+|+|+-.++
T Consensus 133 ~~~d~~~~~s~~~~~~~~~----~f~~~~~~i--~~~G~PR~D~l~~~~~----~~~~~i~~~~~~~~~~k~ILyaPT~R 202 (369)
T PF04464_consen 133 RNYDYFIVSSEFEKEIFKK----AFGYPEDKI--LVTGYPRNDYLFNKSK----ENRNRIKKKLGIDKDKKVILYAPTWR 202 (369)
T ss_dssp TT-SEEEESSHHHHHHHHH----HTT--GGGE--EES--GGGHHHHHSTT-----HHHHHHHHTT--SS-EEEEEE----
T ss_pred cCCcEEEECCHHHHHHHHH----HhccCcceE--EEeCCCeEhHHhccCH----HHHHHHHHHhccCCCCcEEEEeeccc
Confidence 7889999999988887775 667666544 4456644322211111 11567888999999988999986654
Q ss_pred ccchh------HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHH-HHHHHHHhcCCCCcEEEecCcCCHHHH
Q 017085 188 RGKGQ------DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFES-ELRNYVMQKKIQDRVHFVNKTLTVAPY 260 (377)
Q Consensus 188 ~~Kg~------~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~-~l~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (377)
..... ...++ +..+. .+. ..++.+++-... ... ..... ....+++.+.....++.++
T Consensus 203 ~~~~~~~~~~~~~~~~-~~~l~-~~~-----~~~~~li~k~Hp------~~~~~~~~~---~~~~~~i~~~~~~~~~~~l 266 (369)
T PF04464_consen 203 DNSSNEYFKFFFSDLD-FEKLN-FLL-----KNNYVLIIKPHP------NMKKKFKDF---KEDNSNIIFVSDNEDIYDL 266 (369)
T ss_dssp GGG--GGSS----TT--HHHHH-HHH-----TTTEEEEE--SH------HHHTT-------TT-TTTEEE-TT-S-HHHH
T ss_pred cccccccccccccccC-HHHHH-HHh-----CCCcEEEEEeCc------hhhhchhhh---hccCCcEEECCCCCCHHHH
Confidence 43322 12222 22222 121 278888877663 222 11111 2335688888877789999
Q ss_pred HHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe--CCCC-------cccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 261 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT--AAGG-------TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 261 ~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s--~~~~-------~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
+..||+++.= ++-++.|++.+++|||.. |... ..+ ..+...|-++. + .++|.++|..++
T Consensus 267 l~~aDiLITD-------ySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~~~--~--~~eL~~~i~~~~ 334 (369)
T PF04464_consen 267 LAAADILITD-------YSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPIVY--N--FEELIEAIENII 334 (369)
T ss_dssp HHT-SEEEES-------S-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-EES--S--HHHHHHHHTTHH
T ss_pred HHhcCEEEEe-------chhHHHHHHHhCCCEEEEeccHHHHhhccCCCCc-hHhhCCCceeC--C--HHHHHHHHHhhh
Confidence 9999999832 345899999999999965 3211 111 11122333433 2 899999999988
Q ss_pred hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017085 332 THVERRLTMGKRGYERVKEIFQEHHMAERIAVV 364 (377)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 364 (377)
+++....+..+..++.... |.-.+.++++.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~ 366 (369)
T PF04464_consen 335 ENPDEYKEKREKFRDKFFK-YNDGNSSERIVNY 366 (369)
T ss_dssp HHHHHTHHHHHHHHHHHST-T--S-HHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCC-CCCchHHHHHHHH
Confidence 7665443333333332212 3334555555544
No 126
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.78 E-value=1.1e-06 Score=73.86 Aligned_cols=267 Identities=12% Similarity=0.092 Sum_probs=151.1
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEE-------------------ccchhHHHhhhcccEEE
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-------------------AKGQETINTALKADLIV 62 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~Div~ 62 (377)
++..+|.++||+|.+-|.+.+. ..+.+.-.|+.... ...+.++..+.+||+.+
T Consensus 18 ~lI~elekkG~ev~iT~rd~~~--------v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kpdv~i 89 (346)
T COG1817 18 NLIWELEKKGHEVLITCRDFGV--------VTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKPDVAI 89 (346)
T ss_pred HHHHHHHhCCeEEEEEEeecCc--------HHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCCceEe
Confidence 4678899999999999976543 33334444443322 11345666789999998
Q ss_pred EcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEE
Q 017085 63 LNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV 142 (377)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi 142 (377)
.-++.. .....+..++ |.+.....-. .....+..++.++.++.+...-...+. .+|..+.++ +-
T Consensus 90 ~~~s~~--l~rvafgLg~-----psIi~~D~eh---A~~qnkl~~Pla~~ii~P~~~~~~~~~-----~~G~~p~~i-~~ 153 (346)
T COG1817 90 GKHSPE--LPRVAFGLGI-----PSIIFVDNEH---AEAQNKLTLPLADVIITPEAIDEEELL-----DFGADPNKI-SG 153 (346)
T ss_pred ecCCcc--hhhHHhhcCC-----ceEEecCChh---HHHHhhcchhhhhheecccccchHHHH-----HhCCCccce-ec
Confidence 733221 1111222233 3333222211 112234455778888887776655544 556554433 33
Q ss_pred EcCChhh----hHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEE-ec-----cccccchhHHHHHHHHHHHHHHhhhccc
Q 017085 143 HLGNSKE----LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI-IN-----SVSRGKGQDLFLHSFYESLELIKEKKLE 212 (377)
Q Consensus 143 ~ngi~~~----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~-~G-----~~~~~Kg~~~ll~a~~~l~~~l~~~~~~ 212 (377)
.||+..- .|.+ ..++.+++|+..+...|++ .- -....++++.+.+++..+.
T Consensus 154 ~~giae~~~v~~f~p----------d~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~--------- 214 (346)
T COG1817 154 YNGIAELANVYGFVP----------DPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELK--------- 214 (346)
T ss_pred ccceeEEeecccCCC----------CHHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHH---------
Confidence 4555321 1221 2467888999886444432 11 1233556666666666542
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcE
Q 017085 213 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 292 (377)
Q Consensus 213 ~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~Pv 292 (377)
+.-.+++... +..++..+.+ ++++.....-|-.+++.-|++++ .+.|+..-||+..|+|.
T Consensus 215 --k~giV~ipr~--------~~~~eife~~---~n~i~pk~~vD~l~Llyya~lvi-------g~ggTMarEaAlLGtpa 274 (346)
T COG1817 215 --KYGIVLIPRE--------KEQAEIFEGY---RNIIIPKKAVDTLSLLYYATLVI-------GAGGTMAREAALLGTPA 274 (346)
T ss_pred --hCcEEEecCc--------hhHHHHHhhh---ccccCCcccccHHHHHhhhheee-------cCCchHHHHHHHhCCce
Confidence 2335555553 1122222222 23444444456567888899887 33477889999999999
Q ss_pred EEeCCC---CcccceecCcceeeecCCCCChhHHHHHHHHHhhCHH
Q 017085 293 LGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 335 (377)
Q Consensus 293 I~s~~~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~ 335 (377)
|.+..| +..++.. +.|.++...| +.+..+...+++.++.
T Consensus 275 Is~~pGkll~vdk~li--e~G~~~~s~~--~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 275 ISCYPGKLLAVDKYLI--EKGLLYHSTD--EIAIVEYAVRNLKYRR 316 (346)
T ss_pred EEecCCccccccHHHH--hcCceeecCC--HHHHHHHHHHHhhchh
Confidence 998744 3444442 4788998887 7777777777776664
No 127
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.76 E-value=5.1e-06 Score=71.52 Aligned_cols=268 Identities=10% Similarity=0.023 Sum_probs=148.0
Q ss_pred hhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc----cchhh-----hccccccceeeeeccchhhHh
Q 017085 54 TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----FKLDY-----VKHLPLVAGAMIDSHVTAEYW 124 (377)
Q Consensus 54 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~----~~~~~-----~~~~~~~~~~~~~s~~~~~~~ 124 (377)
+.++.+-+++|+.+......+++...++. .++.|++.+..-.. ++.+. +...+++..+++ ......++
T Consensus 75 ~~~r~~kff~HGqFn~~lwlaLl~g~~~~--~k~~WhIWGaDLYe~~~~~k~rlfy~lRr~aq~rvg~V~a-t~GDl~~~ 151 (360)
T PF07429_consen 75 KADRADKFFLHGQFNPWLWLALLFGKIKL--KKCYWHIWGADLYEDSRSLKFRLFYFLRRLAQKRVGHVFA-TRGDLAYF 151 (360)
T ss_pred hhCccceEEEeccCcHHHHHHHHcCCccc--cceEEEEeCchhhccccccchhHHHHHHHHHHhhcCeEEE-EcchHHHH
Confidence 34788999999877443333333333322 46777776643111 11111 112245666655 44455555
Q ss_pred hhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecc-ccccchhHHHHHHHHHHH
Q 017085 125 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS-VSRGKGQDLFLHSFYESL 203 (377)
Q Consensus 125 ~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~-~~~~Kg~~~ll~a~~~l~ 203 (377)
.+ .++..+..+...|+.++......... .-..++.+|+ +|+ -++.-++-.+++++.+..
T Consensus 152 ~q----~~~~~~~~~lyfPt~m~~~~~~~~~~---------------~~~~~~ltIL-vGNSgd~sNnHieaL~~L~~~~ 211 (360)
T PF07429_consen 152 QQ----RYPRVPASLLYFPTRMDPALTLSEKN---------------KKNKGKLTIL-VGNSGDPSNNHIEALEALKQQF 211 (360)
T ss_pred HH----HcCCCCceEEEcCCCCchhhhccccc---------------cCCCCceEEE-EcCCCCCCccHHHHHHHHHHhc
Confidence 55 44323333444444444432111110 0113455665 455 466677766666655421
Q ss_pred HHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec-Cc--CCHHHHHHhcCEEEecCCCCCCccch
Q 017085 204 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-KT--LTVAPYLAAIDVLVQNSQAWGECFGR 280 (377)
Q Consensus 204 ~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g-~~--~~~~~~~~~adv~l~ps~~~~e~~~~ 280 (377)
..++++++-=+=+.....|.+++.+..+++--.+++..+- +. +|..++++.||+.+++..- ..|+|+
T Consensus 212 ---------~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~R-QQgiGn 281 (360)
T PF07429_consen 212 ---------GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNR-QQGIGN 281 (360)
T ss_pred ---------CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeech-hhhHhH
Confidence 2578877643322222368899999998875556777654 33 8999999999999998773 788885
Q ss_pred HHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 017085 281 ITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEHHMAE 359 (377)
Q Consensus 281 ~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~ 359 (377)
.+ =.+.+|+||+.+.....-..+.+.+.-+++..++-+.+.++++=.++.. |+. .+ .|...+..+
T Consensus 282 I~-lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~~dk~-----------~i--aFf~pny~~ 347 (360)
T PF07429_consen 282 IC-LLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLANVDKQ-----------QI--AFFAPNYLQ 347 (360)
T ss_pred HH-HHHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhhCccc-----------ce--eeeCCchHH
Confidence 54 4899999999997544433343333334444333334555555444433 221 11 166666677
Q ss_pred HHHHHHHHH
Q 017085 360 RIAVVLKEV 368 (377)
Q Consensus 360 ~~~~~~~~~ 368 (377)
.|.+.+.-+
T Consensus 348 ~w~~~l~~~ 356 (360)
T PF07429_consen 348 GWRQALRLA 356 (360)
T ss_pred HHHHHHHHH
Confidence 776666543
No 128
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.69 E-value=7.7e-07 Score=77.12 Aligned_cols=315 Identities=12% Similarity=0.061 Sum_probs=177.9
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceE-EEcc----chhHHHhhhcccEEEEcCch-------hhh
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-ISAK----GQETINTALKADLIVLNTAV-------AGK 70 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~Div~~~~~~-------~~~ 70 (377)
+.++|...||+|+.+-+....... ......+.+... +... .....++..+||+|++-... ...
T Consensus 23 ~~~~l~~~g~kvlflE~~~~~~~k-----~rd~~~~~~~~~~~~~~~~e~~~~~~i~~fk~d~iv~~~~~~~~~~~~~~~ 97 (373)
T COG4641 23 LLRALKMDGMKVLFLESGDFWDYK-----NRDIDAEDGCTEAFYKDQPELESLLYIREFKPDIIVNMSGDDQPDEESTID 97 (373)
T ss_pred HHHHHHhccceEEEEecccHHhhh-----cccccCccchhheeecCcHHHHHHHHHHhcCCcEEEEecccccccceehHH
Confidence 457888899999999755421100 001111122222 1111 22344577899999887633 232
Q ss_pred HHHHHhhcCCCccccceeEEeeeecccc--cc----hhh-hccccccceeeeeccch-hhHhhhhhhhhhhccCCCeEEE
Q 017085 71 WLDAVLKEDVPRVLPNVLWWIHEMRGHY--FK----LDY-VKHLPLVAGAMIDSHVT-AEYWKNRTRERLRIKMPDTYVV 142 (377)
Q Consensus 71 ~~~~~~~~~~~~~~~~~v~~~h~~~~~~--~~----~~~-~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~vi 142 (377)
+..++....+ |+++|.-+..... +. ..+ ++.+...|.++..+... +..+.+ .. ...++.-+
T Consensus 98 ~~a~l~~~~l-----~~~~w~te~p~~~~~~~~~~~~~~~~~~l~~fd~v~~~g~~l~~~~yyq----~~--~~~~~~~~ 166 (373)
T COG4641 98 LWAWLKRKCL-----PVIVWYTEDPYDTDIFSQVAEEQLARRPLFIFDNVLSFGGGLVANKYYQ----EG--GARNCYYL 166 (373)
T ss_pred HHHHhhcCCc-----ceEEEEeccchhhhhhhhhhHHHhhccccchhhhhhhccchHHHHHHHH----hh--cccceecc
Confidence 3333333333 4444444331110 10 111 11222233333333333 222222 21 23568889
Q ss_pred EcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEe
Q 017085 143 HLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG 222 (377)
Q Consensus 143 ~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G 222 (377)
+.++|.+.+.+.+... .-.--+.++|...+. ..+.+-+.+.+=..++. .+-++...|
T Consensus 167 ~~a~d~~~~~~i~~da----------------~~~~dL~~ign~~pD-r~e~~ke~~~~ps~kl~------v~rr~~~~g 223 (373)
T COG4641 167 PWAVDDSLFHPIPPDA----------------SYDVDLNLIGNPYPD-RVEEIKEFFVEPSFKLM------VDRRFYVLG 223 (373)
T ss_pred CccCCchhcccCCccc----------------cceeeeEEecCCCcc-HHHHHHHHhhccchhhh------ccceeeecC
Confidence 9999998887654221 122346778876553 22222222211000110 124555556
Q ss_pred cCCCcccHHHHHHHHHHHhcCCCCcEEEecCc---CCHHHHHHhcCEEEecCCC-CCCc---cchHHHHHHHcCCcEEEe
Q 017085 223 SDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQA-WGEC---FGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~---~~~~~~~~~adv~l~ps~~-~~e~---~~~~~~Ea~a~g~PvI~s 295 (377)
..- ...+... -..+++...|+. +.+...++..|+.+.-++. ..++ +.+-+.|+++||.|.+++
T Consensus 224 ~~y------~~~~~~~----~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~ 293 (373)
T COG4641 224 PRY------PDDIWGR----TWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITD 293 (373)
T ss_pred Ccc------chhhhcc----cccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccc
Confidence 541 1111111 112345555543 6688888888988754332 1122 368899999999999999
Q ss_pred CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 017085 296 AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 370 (377)
Q Consensus 296 ~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 370 (377)
...++..++..|+.-++.. | ..++.+.+..++..++.++++++.+++.+...|+.+.-+..+.+....+..
T Consensus 294 ~~~~~e~~f~pgk~~iv~~--d--~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~sI~~ 364 (373)
T COG4641 294 YWKDLEKFFKPGKDIIVYQ--D--SKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIASINI 364 (373)
T ss_pred cHHHHHHhcCCchheEEec--C--HHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999998876544443 3 899999999999999999999999999999989998888777777766543
No 129
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=1.3e-05 Score=70.51 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=75.8
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcc----cceecC-cceeeec-----CCCCChhHHH
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT----EIVVNG-TTGLLHP-----VGKEGITPLA 324 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~----e~~~~~-~~g~~~~-----~~~~~~~~la 324 (377)
-|..++.+.|.+.|+||+ +|++|.+..|.-.||+|.|+|+..|+. |.+.+. ..|+.+- ..|+++++|+
T Consensus 492 lDYeeFVRGCHLGVFPSY--YEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~ 569 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLA 569 (692)
T ss_pred CCHHHHhccccccccccc--cCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHH
Confidence 577899999999999999 999999999999999999999987754 444332 3465542 2233477777
Q ss_pred HHHHHHhhCHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHH
Q 017085 325 KNIVKLATHVERRLTM-GKRGYERVKEIFQEHHMAERIAVV 364 (377)
Q Consensus 325 ~~i~~l~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~ 364 (377)
+-+........ ++++ ..+--++..+-.+|..+...|.+.
T Consensus 570 ~~m~~F~~qsR-RQRIiqRNrtErLSdLLDWk~lG~~Y~~a 609 (692)
T KOG3742|consen 570 SFMYEFCKQSR-RQRIIQRNRTERLSDLLDWKYLGRYYRKA 609 (692)
T ss_pred HHHHHHHHHHH-HHHHHHhcchhhHHHHHhHHHHhHHHHHH
Confidence 77777665333 3333 334445566678888887766654
No 130
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.47 E-value=1.5e-05 Score=70.83 Aligned_cols=185 Identities=12% Similarity=0.052 Sum_probs=102.8
Q ss_pred hcccEEEEcCch-hhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhc
Q 017085 56 LKADLIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI 134 (377)
Q Consensus 56 ~~~Div~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 134 (377)
++||++++-+.. ....+...++...+ ..|+++.+--..+.|-..+.....+.+|.+.+...+-.+++ |
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~--~i~viyyi~PqvWAWr~~R~~~i~k~~d~vl~ifPFE~~~y--------g- 143 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYP--KKEIIYYILPQVWAWKKGRAKILEKYCDFLASILPFEVQFY--------Q- 143 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCC--CCCEEEEECccceeeCcchHHHHHHHHhhhhccCCCCHHHh--------C-
Confidence 799999987643 22223333332211 13555555543334444555566678888888776555544 2
Q ss_pred cCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCC
Q 017085 135 KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP 214 (377)
Q Consensus 135 ~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~ 214 (377)
.++..+.|++-... ... +.. ++++..+.++.|+-. .-+..++..+.+..+++++ .
T Consensus 144 --~~~~~VGhPl~d~~-~~~-------------~~~--~~~~~~I~llPGSR~--~Ei~~llP~~~~aa~~L~~-----~ 198 (347)
T PRK14089 144 --SKATYVGHPLLDEI-KEF-------------KKD--LDKEGTIAFMPGSRK--SEIKRLMPIFKELAKKLEG-----K 198 (347)
T ss_pred --CCCEEECCcHHHhh-hhh-------------hhh--cCCCCEEEEECCCCH--HHHHHHHHHHHHHHHHHhh-----c
Confidence 34667877763321 110 011 223455666666432 1222333333333334433 2
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEE
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 294 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~ 294 (377)
...+++.|... .+.+++...+. ..+.+.+ +..++|+.||+.+..| |++.+|++.+|+|.|+
T Consensus 199 ~~~~~i~~a~~------~~~i~~~~~~~---~~~~~~~---~~~~~m~~aDlal~~S-------GT~TLE~al~g~P~Vv 259 (347)
T PRK14089 199 EKILVVPSFFK------GKDLKEIYGDI---SEFEISY---DTHKALLEAEFAFICS-------GTATLEAALIGTPFVL 259 (347)
T ss_pred CcEEEEeCCCc------HHHHHHHHhcC---CCcEEec---cHHHHHHhhhHHHhcC-------cHHHHHHHHhCCCEEE
Confidence 26777777642 24555544432 2344553 6678999999998666 7888899999999997
Q ss_pred e
Q 017085 295 T 295 (377)
Q Consensus 295 s 295 (377)
.
T Consensus 260 ~ 260 (347)
T PRK14089 260 A 260 (347)
T ss_pred E
Confidence 5
No 131
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.46 E-value=6.7e-07 Score=69.10 Aligned_cols=83 Identities=24% Similarity=0.233 Sum_probs=51.6
Q ss_pred CcHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEE-------------ccchhHHHhhhcccEEEEcCch
Q 017085 1 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-------------AKGQETINTALKADLIVLNTAV 67 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~Div~~~~~~ 67 (377)
+++++.|.+.||||++++...+...... ..++.+.. .....+++++.+||+||+|...
T Consensus 14 ~~~~~~L~~~g~~V~ii~~~~~~~~~~~---------~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~~~DvIh~h~~~ 84 (139)
T PF13477_consen 14 YNLAKELKKRGYDVHIITPRNDYEKYEI---------IEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKEKPDVIHCHTPS 84 (139)
T ss_pred HHHHHHHHHCCCEEEEEEcCCCchhhhH---------hCCeEEEEecCCCCccHHHHHHHHHHHHhccCCCCEEEEecCC
Confidence 3689999999999999998654322211 12222221 2245566788999999999976
Q ss_pred hhhHHHHHhhcCCCccccceeEEeeee
Q 017085 68 AGKWLDAVLKEDVPRVLPNVLWWIHEM 94 (377)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~v~~~h~~ 94 (377)
+...+..++.. ... .+|++++.|+.
T Consensus 85 ~~~~~~~l~~~-~~~-~~~~i~~~hg~ 109 (139)
T PF13477_consen 85 PYGLFAMLAKK-LLK-NKKVIYTVHGS 109 (139)
T ss_pred hHHHHHHHHHH-HcC-CCCEEEEecCC
Confidence 53333333221 111 14889999975
No 132
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=7.1e-05 Score=62.38 Aligned_cols=135 Identities=17% Similarity=0.198 Sum_probs=81.8
Q ss_pred EEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEE-EecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCH
Q 017085 179 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV 257 (377)
Q Consensus 179 ~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~ 257 (377)
+++..|.-+ .|++ .+++++.+.+ .++.+.| +|.+. +..+.+++.++.. +++.+.-..+++
T Consensus 161 ilI~lGGsD-pk~l--t~kvl~~L~~---------~~~nl~iV~gs~~----p~l~~l~k~~~~~---~~i~~~~~~~dm 221 (318)
T COG3980 161 ILITLGGSD-PKNL--TLKVLAELEQ---------KNVNLHIVVGSSN----PTLKNLRKRAEKY---PNINLYIDTNDM 221 (318)
T ss_pred EEEEccCCC-hhhh--HHHHHHHhhc---------cCeeEEEEecCCC----cchhHHHHHHhhC---CCeeeEecchhH
Confidence 344445433 3543 4555554433 3455654 45443 3456666666665 588888888999
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEE----eCCCCcccceecCcceeeecCC--CCChhHHHHHHHHHh
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG----TAAGGTTEIVVNGTTGLLHPVG--KEGITPLAKNIVKLA 331 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~----s~~~~~~e~~~~~~~g~~~~~~--~~~~~~la~~i~~l~ 331 (377)
+.+|..||+.+.. -|.++.||+..|+|.++ .+....+..+.. .|.....+ . ........+.++.
T Consensus 222 a~LMke~d~aI~A-------aGstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~--lg~~~~l~~~l-~~~~~~~~~~~i~ 291 (318)
T COG3980 222 AELMKEADLAISA-------AGSTLYEALLLGVPSLVLPLAENQIATAKEFEA--LGIIKQLGYHL-KDLAKDYEILQIQ 291 (318)
T ss_pred HHHHHhcchheec-------cchHHHHHHHhcCCceEEeeeccHHHHHHHHHh--cCchhhccCCC-chHHHHHHHHHhh
Confidence 9999999998742 37799999999999433 333333332211 22222221 1 1466777778888
Q ss_pred hCHHHHHHHHH
Q 017085 332 THVERRLTMGK 342 (377)
Q Consensus 332 ~~~~~~~~~~~ 342 (377)
+|+..+..+..
T Consensus 292 ~d~~~rk~l~~ 302 (318)
T COG3980 292 KDYARRKNLSF 302 (318)
T ss_pred hCHHHhhhhhh
Confidence 88876665544
No 133
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.33 E-value=8.4e-05 Score=68.45 Aligned_cols=236 Identities=16% Similarity=0.154 Sum_probs=151.1
Q ss_pred ccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhh--hHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEec
Q 017085 107 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKE--LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN 184 (377)
Q Consensus 107 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G 184 (377)
...+|++++.+...--.+.+...+++-.- +.+..+...-... ...+. ....|.+++++++.+++..+.
T Consensus 697 a~~mDYiITDs~tsPl~~a~~ysEkLv~l-Ph~ffi~d~~qk~~~~~dpn---------~kP~r~~y~Lp~d~vvf~~FN 766 (966)
T KOG4626|consen 697 ATFMDYIITDSVTSPLELAQQYSEKLVYL-PHCFFIGDHKQKNQDVLDPN---------NKPTRSQYGLPEDAVVFCNFN 766 (966)
T ss_pred CceeeEEeecccCChHHHHHHHHHHHhhC-CceEEecCcccccccccCCC---------CCCCCCCCCCCCCeEEEeech
Confidence 45678899888766655555444444322 3355554332211 11110 113688999999988887666
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-CcEEEecCc--CCHHHHH
Q 017085 185 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYL 261 (377)
Q Consensus 185 ~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~g~~--~~~~~~~ 261 (377)
.+ .|=-...++.|.++++ +-|+-.|++.--... -..+++..+.++|++ ++|+|..-. +|-..-.
T Consensus 767 qL--yKidP~~l~~W~~ILk-------~VPnS~LwllrfPa~----ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~ 833 (966)
T KOG4626|consen 767 QL--YKIDPSTLQMWANILK-------RVPNSVLWLLRFPAV----GEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRG 833 (966)
T ss_pred hh--hcCCHHHHHHHHHHHH-------hCCcceeEEEecccc----chHHHHHHHHHhCCCccceeeccccchHHHHHhh
Confidence 54 3545567888888766 347777777654321 237889999999985 567777643 5555667
Q ss_pred HhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccce-----ecCcceeeecCCCCChhHHHHHHHHHhhCHHH
Q 017085 262 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIV-----VNGTTGLLHPVGKEGITPLAKNIVKLATHVER 336 (377)
Q Consensus 262 ~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~-----~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~ 336 (377)
+.+||.+-+-. -..-++-+|.+.+|+|+|+-.....+.-+ ..-+.|-++.. + .++..+.-.++-+|.+.
T Consensus 834 ~LaDv~LDTpl---cnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak-~--~eEY~~iaV~Latd~~~ 907 (966)
T KOG4626|consen 834 QLADVCLDTPL---CNGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK-N--REEYVQIAVRLATDKEY 907 (966)
T ss_pred hhhhhcccCcC---cCCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh-h--HHHHHHHHHHhhcCHHH
Confidence 88999986543 22346778999999999975322111111 11123333322 2 78888888899999998
Q ss_pred HHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHhc
Q 017085 337 RLTMGKRGYERVK--EIFQEHHMAERIAVVLKEVLKK 371 (377)
Q Consensus 337 ~~~~~~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~ 371 (377)
...++..-|+.-. --|+-..++..++.+|.+.-+.
T Consensus 908 L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~ 944 (966)
T KOG4626|consen 908 LKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKK 944 (966)
T ss_pred HHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHH
Confidence 8888877766322 2488999999999999887653
No 134
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=1e-05 Score=77.06 Aligned_cols=142 Identities=23% Similarity=0.181 Sum_probs=109.4
Q ss_pred CCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHH----HHhcCCCCcE
Q 017085 173 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNY----VMQKKIQDRV 248 (377)
Q Consensus 173 ~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~----~~~~~~~~~v 248 (377)
++++.+.++++-|+...|+....+.-+..+...+++. ..|.+.+++.|...|.+. ..+.+.++ ++..+...+|
T Consensus 483 ~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d--~~prv~~iFaGKAhP~y~-~aK~iIk~I~~~a~~in~~lkV 559 (750)
T COG0058 483 VDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKED--WVPRVQIIFAGKAHPADY-AAKEIIKLINDVADVINNKLKV 559 (750)
T ss_pred cCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcC--CCCceEEEEeccCCCcch-HHHHHHHHHHHHHHhhcccceE
Confidence 4567789999999999999999887777777777731 346677788888766542 33444333 3444444578
Q ss_pred EEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCccccee--cCcceeeecCCC
Q 017085 249 HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV--NGTTGLLHPVGK 317 (377)
Q Consensus 249 ~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~--~~~~g~~~~~~~ 317 (377)
.|+..- .-...++.+|||-...|....|.+|++-+-+|.-|.+-|+|--|...|+.+ .+.|||++..+.
T Consensus 560 vFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~ 632 (750)
T COG0058 560 VFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETV 632 (750)
T ss_pred EEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCch
Confidence 888864 334456799999998888779999999999999999999999899999886 788999998754
No 135
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.23 E-value=7.6e-06 Score=65.17 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=77.9
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc------------chhHHH------hh--hcccEE
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------GQETIN------TA--LKADLI 61 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~------~~--~~~Div 61 (377)
+|+..|.++|++|+|+|.....+.. ...-+|++++..+ .+..+. +. .+.|+|
T Consensus 25 ~L~~~l~~~g~~v~Vyc~~~~~~~~--------~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~~al~~~~~~~~~~~ii 96 (185)
T PF09314_consen 25 ELAPRLVSKGIDVTVYCRSDYYPYK--------EFEYNGVRLVYIPAPKNGSAESIIYDFLSLLHALRFIKQDKIKYDII 96 (185)
T ss_pred HHHHHHhcCCceEEEEEccCCCCCC--------CcccCCeEEEEeCCCCCCchHHHHHHHHHHHHHHHHHhhccccCCEE
Confidence 5788899999999999976543211 1112344443211 011111 11 257899
Q ss_pred EEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-----cchhh-----hccccccceeeeeccchhhHhhhhhhhh
Q 017085 62 VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-----FKLDY-----VKHLPLVAGAMIDSHVTAEYWKNRTRER 131 (377)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-----~~~~~-----~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 131 (377)
+++....+.++....+ .++....+++...|+..... +.+.+ +...+.+|.++++|..+.+++.+ +
T Consensus 97 ~ilg~~~g~~~~~~~r-~~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~y~~~----~ 171 (185)
T PF09314_consen 97 LILGYGIGPFFLPFLR-KLRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQDYIKE----R 171 (185)
T ss_pred EEEcCCccHHHHHHHH-hhhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHH----H
Confidence 9988663333333332 12222347888888764321 11112 23346889999999999999988 4
Q ss_pred hhccCCCeEEEEcCCh
Q 017085 132 LRIKMPDTYVVHLGNS 147 (377)
Q Consensus 132 ~~~~~~~~~vi~ngi~ 147 (377)
++ ..+..+|++|.|
T Consensus 172 y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 172 YG--RKKSTFIAYGAD 185 (185)
T ss_pred cC--CCCcEEecCCCC
Confidence 54 467899999975
No 136
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=98.20 E-value=1.2e-06 Score=70.05 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=64.9
Q ss_pred CcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC--------cccceecCcceeeecCCC
Q 017085 246 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG--------TTEIVVNGTTGLLHPVGK 317 (377)
Q Consensus 246 ~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~--------~~e~~~~~~~g~~~~~~~ 317 (377)
.++.+.++.+++.++|+.||+++. -+.+.++.|++++|+|.|.-...+ ....+.+...|..+...+
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvIs------~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVIS------HAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESE 128 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEEE------CS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC
T ss_pred CcEEEEechhhHHHHHHHcCEEEe------CCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCccc
Confidence 589999999999999999999883 334679999999999998776554 222233344566665544
Q ss_pred CChhHHHHHHHHHhhCHHHHHHHHHHH
Q 017085 318 EGITPLAKNIVKLATHVERRLTMGKRG 344 (377)
Q Consensus 318 ~~~~~la~~i~~l~~~~~~~~~~~~~~ 344 (377)
.+.+.|.++|..+++++.....+..++
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAKAA 155 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCCCH
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 347899999999999988766655443
No 137
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.18 E-value=6.5e-05 Score=70.74 Aligned_cols=139 Identities=14% Similarity=0.069 Sum_probs=90.3
Q ss_pred CCCeEEEEecccccc-----chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE
Q 017085 175 NEDLLFAIINSVSRG-----KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 249 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~-----Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~ 249 (377)
++..+++..|..... +-...++++++.+ + .++++..++.. .. .++++||.
T Consensus 295 ~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l-----------~-~~viw~~~~~~-----~~--------~~~p~Nv~ 349 (507)
T PHA03392 295 TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL-----------P-YNVLWKYDGEV-----EA--------INLPANVL 349 (507)
T ss_pred CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC-----------C-CeEEEEECCCc-----Cc--------ccCCCceE
Confidence 334777778886432 2234444444422 4 57777655411 10 23578999
Q ss_pred EecCcCCHHHHH--HhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC----CCcccceecCcceeeecCCCCChhHH
Q 017085 250 FVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVNGTTGLLHPVGKEGITPL 323 (377)
Q Consensus 250 ~~g~~~~~~~~~--~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~----~~~~e~~~~~~~g~~~~~~~~~~~~l 323 (377)
+.++.. -.+++ ..+++++ ..|...++.||+.+|+|+|+-.. ......+...+.|...+..+-+.+++
T Consensus 350 i~~w~P-q~~lL~hp~v~~fI------tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l 422 (507)
T PHA03392 350 TQKWFP-QRAVLKHKNVKAFV------TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQL 422 (507)
T ss_pred EecCCC-HHHHhcCCCCCEEE------ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHH
Confidence 999863 35677 4588888 34456789999999999998753 33445555566888777655458999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHH
Q 017085 324 AKNIVKLATHVERRLTMGKRGY 345 (377)
Q Consensus 324 a~~i~~l~~~~~~~~~~~~~~~ 345 (377)
.++|.++++|+..+++..+-+.
T Consensus 423 ~~ai~~vl~~~~y~~~a~~ls~ 444 (507)
T PHA03392 423 VLAIVDVIENPKYRKNLKELRH 444 (507)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875554444333
No 138
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.15 E-value=0.00011 Score=67.23 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=102.0
Q ss_pred CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcC
Q 017085 176 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 255 (377)
Q Consensus 176 ~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~ 255 (377)
.+++.+..|..... ..+++.+.+ .+.+ -+.++++...+.. . ..-++++|+...++..
T Consensus 237 ~~~vyvslGt~~~~---~~l~~~~~~---a~~~-----l~~~vi~~~~~~~------~------~~~~~p~n~~v~~~~p 293 (406)
T COG1819 237 RPIVYVSLGTVGNA---VELLAIVLE---ALAD-----LDVRVIVSLGGAR------D------TLVNVPDNVIVADYVP 293 (406)
T ss_pred CCeEEEEcCCcccH---HHHHHHHHH---HHhc-----CCcEEEEeccccc------c------ccccCCCceEEecCCC
Confidence 44555566765443 344443333 3322 5677777665411 0 1235678999999873
Q ss_pred CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC----CCcccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 256 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~----~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
...++..||+++.. |...++.||+.+|+|+|+-.. ...++.++.-+.|...+......+.++++|.+++
T Consensus 294 -~~~~l~~ad~vI~h------GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL 366 (406)
T COG1819 294 -QLELLPRADAVIHH------GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVL 366 (406)
T ss_pred -HHHHhhhcCEEEec------CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHh
Confidence 44699999999953 345689999999999998743 3456667677788888753334999999999999
Q ss_pred hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 332 THVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
+|+..++...+... .+.+.-....+++.++++.
T Consensus 367 ~~~~~~~~~~~~~~-~~~~~~g~~~~a~~le~~~ 399 (406)
T COG1819 367 ADDSYRRAAERLAE-EFKEEDGPAKAADLLEEFA 399 (406)
T ss_pred cCHHHHHHHHHHHH-HhhhcccHHHHHHHHHHHH
Confidence 99886555444333 3444444444444444443
No 139
>PRK14986 glycogen phosphorylase; Provisional
Probab=98.03 E-value=4.6e-05 Score=73.68 Aligned_cols=150 Identities=16% Similarity=0.129 Sum_probs=111.1
Q ss_pred CCCCCCeEEEEeccccccchhHH-HHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhc--------
Q 017085 172 GVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-------- 242 (377)
Q Consensus 172 ~~~~~~~~i~~~G~~~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-------- 242 (377)
.++++.+.++++-|+...|+..+ ++..+..+.+.+.+.+....+.++++.|...|.+. ..+.+.+++...
T Consensus 538 ~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIk~I~~va~~in~Dp 616 (815)
T PRK14986 538 VVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYY-MAKHIIHLINDVAKVINNDP 616 (815)
T ss_pred ccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHHHhccCh
Confidence 36677889999999999999999 88887766544433111123588889998777653 444554444332
Q ss_pred CCCC--cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec--CcceeeecCC
Q 017085 243 KIQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGLLHPVG 316 (377)
Q Consensus 243 ~~~~--~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~--~~~g~~~~~~ 316 (377)
.+.+ +|.|+..- +-...++.+|||....|....|.+|++-+-+|.-|.+.+++--|...|+.++ ++|||.+...
T Consensus 617 ~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~ 696 (815)
T PRK14986 617 QIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNT 696 (815)
T ss_pred hhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCC
Confidence 2233 68888853 4455678999999988887789999999999999999999999999999876 7899999764
Q ss_pred CCChhHHHH
Q 017085 317 KEGITPLAK 325 (377)
Q Consensus 317 ~~~~~~la~ 325 (377)
++++.+
T Consensus 697 ---~~ev~~ 702 (815)
T PRK14986 697 ---AEEVEA 702 (815)
T ss_pred ---HHHHHH
Confidence 444444
No 140
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=97.99 E-value=0.00055 Score=65.50 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=93.5
Q ss_pred CCCCCCeEEEEeccccccchhHH-HHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhc--------
Q 017085 172 GVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-------- 242 (377)
Q Consensus 172 ~~~~~~~~i~~~G~~~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-------- 242 (377)
.++++.+..+++-|+...|+..+ ++..+....+.+...+....++++++.|...|.+. ..+++.+++.+.
T Consensus 439 ~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~-~gK~iIk~I~~va~~in~Dp 517 (713)
T PF00343_consen 439 ELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDY-MGKEIIKLINNVAEVINNDP 517 (713)
T ss_dssp ---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-H-HHHHHHHHHHHHHHHHCT-T
T ss_pred CCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHHHHhcCh
Confidence 35778889999999999999888 55555544433332111234688999998776653 445555554332
Q ss_pred CCCC--cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec--CcceeeecCC
Q 017085 243 KIQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGLLHPVG 316 (377)
Q Consensus 243 ~~~~--~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~--~~~g~~~~~~ 316 (377)
.+.+ +|.|+..- .-...++.+|||.+..|+...|++|++-+-+|.-|.+-+++--|...|+.+. .++.+++-..
T Consensus 518 ~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~ 597 (713)
T PF00343_consen 518 EVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLT 597 (713)
T ss_dssp TTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-B
T ss_pred hhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCC
Confidence 2334 68999864 3455678999999988887799999999999999999999988998888754 3577887643
Q ss_pred CCChhHHHH
Q 017085 317 KEGITPLAK 325 (377)
Q Consensus 317 ~~~~~~la~ 325 (377)
.+++.+
T Consensus 598 ---~~ev~~ 603 (713)
T PF00343_consen 598 ---AEEVEE 603 (713)
T ss_dssp ---HHHHHH
T ss_pred ---HHHHHH
Confidence 455433
No 141
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=97.98 E-value=4.2e-05 Score=73.68 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=112.4
Q ss_pred CCCCCCeEEEEeccccccchhHH-HHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcC-------
Q 017085 172 GVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK------- 243 (377)
Q Consensus 172 ~~~~~~~~i~~~G~~~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~------- 243 (377)
.++++.+..+++-|+...|+..+ ++..+..+.+.+.+......+.++++.|...|.. ...+.+.+++....
T Consensus 522 ~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y-~~aK~iIklI~~va~~iN~Dp 600 (794)
T TIGR02093 522 EVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGY-HMAKLIIKLINSVAEVVNNDP 600 (794)
T ss_pred ccCccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCc-HHHHHHHHHHHHHHHHhccCh
Confidence 35677788899999999999999 7887776664443311111357888889877765 35566666655543
Q ss_pred -CCC--cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec--CcceeeecCC
Q 017085 244 -IQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGLLHPVG 316 (377)
Q Consensus 244 -~~~--~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~--~~~g~~~~~~ 316 (377)
+.+ +|.|+..- .-...++.+||+....|....|..|+.-+-+|.-|.+.++|--|...|+.++ ++|+|++...
T Consensus 601 ~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~ 680 (794)
T TIGR02093 601 AVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLT 680 (794)
T ss_pred hhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCC
Confidence 444 68888853 4455778999999988887789999999999999999999988999998876 7899998764
Q ss_pred CCChhHHHH
Q 017085 317 KEGITPLAK 325 (377)
Q Consensus 317 ~~~~~~la~ 325 (377)
++++.+
T Consensus 681 ---~~ev~~ 686 (794)
T TIGR02093 681 ---VEEVEA 686 (794)
T ss_pred ---HHHHHH
Confidence 444443
No 142
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.94 E-value=9.1e-05 Score=71.74 Aligned_cols=144 Identities=17% Similarity=0.135 Sum_probs=108.0
Q ss_pred CCCCCCeEEEEeccccccchhHH-HHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcC-------
Q 017085 172 GVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK------- 243 (377)
Q Consensus 172 ~~~~~~~~i~~~G~~~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~------- 243 (377)
.++++.+..+++-|+...|+..+ ++..+....+...+......+.++++.|...|... ..+.+.+++....
T Consensus 525 ~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~in~Dp 603 (797)
T cd04300 525 EVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYY-MAKLIIKLINAVADVVNNDP 603 (797)
T ss_pred ccCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcH-HHHHHHHHHHHHHHHhccCh
Confidence 35778899999999999999999 77777766544332111113478888888776653 4455555544332
Q ss_pred -CCC--cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec--CcceeeecCC
Q 017085 244 -IQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGLLHPVG 316 (377)
Q Consensus 244 -~~~--~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~--~~~g~~~~~~ 316 (377)
+.+ +|.|+..- .-...++.+||+....|....|..|+.-+-+|.-|.+.++|--|...|+.++ ++|++++...
T Consensus 604 ~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~ 683 (797)
T cd04300 604 DVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLT 683 (797)
T ss_pred hcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCC
Confidence 333 68888853 4455778999999988887789999999999999999999998999998876 7899998764
No 143
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=97.82 E-value=8.6e-05 Score=71.55 Aligned_cols=144 Identities=15% Similarity=0.106 Sum_probs=108.1
Q ss_pred CCCCCCeEEEEeccccccchhHH-HHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcC-------
Q 017085 172 GVRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK------- 243 (377)
Q Consensus 172 ~~~~~~~~i~~~G~~~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~------- 243 (377)
.++++.+..+++-|+...|+..+ ++..+..+.+...+......+.++++.|...|... ..+.+.+++....
T Consensus 524 ~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~va~~in~Dp 602 (798)
T PRK14985 524 EINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYY-LAKNIIFAINKVAEVINNDP 602 (798)
T ss_pred ccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHHHHHhcCCh
Confidence 35677788999999999999999 88887766644332110113488888998777653 4555555554432
Q ss_pred -CCC--cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec--CcceeeecCC
Q 017085 244 -IQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTGLLHPVG 316 (377)
Q Consensus 244 -~~~--~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~--~~~g~~~~~~ 316 (377)
+.+ +|.|+..- .-...++.+||+....|....|.+|++-+-+|.-|.+.++|--|...|+.++ +.|||++...
T Consensus 603 ~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~ 682 (798)
T PRK14985 603 LVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHT 682 (798)
T ss_pred hhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCC
Confidence 223 68888863 4455678999999988887789999999999999999999998998888875 7799999764
No 144
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.80 E-value=0.004 Score=53.99 Aligned_cols=142 Identities=11% Similarity=0.117 Sum_probs=84.6
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
++..+++.+| ...-|-+ |++++......+.+. ...-+++.|...+. ..++.+.+.+.+ .++|.+..+.
T Consensus 218 E~~~Ilvs~G--GG~dG~e-Li~~~l~A~~~l~~l----~~~~~ivtGP~MP~--~~r~~l~~~A~~---~p~i~I~~f~ 285 (400)
T COG4671 218 EGFDILVSVG--GGADGAE-LIETALAAAQLLAGL----NHKWLIVTGPFMPE--AQRQKLLASAPK---RPHISIFEFR 285 (400)
T ss_pred ccceEEEecC--CChhhHH-HHHHHHHHhhhCCCC----CcceEEEeCCCCCH--HHHHHHHHhccc---CCCeEEEEhh
Confidence 4556777777 3445544 344433333233221 12235677876543 234444444433 3689999999
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC--Ccccceec---Cccee--eecCCCCChhHHHHHH
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG--GTTEIVVN---GTTGL--LHPVGKEGITPLAKNI 327 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~--~~~e~~~~---~~~g~--~~~~~~~~~~~la~~i 327 (377)
+++..|+..|+..|.-+ | =+++.|-+++|+|.+.-... +-...+.. .+-|+ +..+.+-.++.|+++|
T Consensus 286 ~~~~~ll~gA~~vVSm~-----G-YNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al 359 (400)
T COG4671 286 NDFESLLAGARLVVSMG-----G-YNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADAL 359 (400)
T ss_pred hhHHHHHHhhheeeecc-----c-chhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHH
Confidence 99999999999998432 2 35789999999998876533 22222221 12232 2223333488999999
Q ss_pred HHHhhCH
Q 017085 328 VKLATHV 334 (377)
Q Consensus 328 ~~l~~~~ 334 (377)
..+++.|
T Consensus 360 ~~~l~~P 366 (400)
T COG4671 360 KAALARP 366 (400)
T ss_pred HhcccCC
Confidence 9888743
No 145
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.0089 Score=58.18 Aligned_cols=193 Identities=16% Similarity=0.072 Sum_probs=130.8
Q ss_pred CeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeE
Q 017085 138 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 217 (377)
Q Consensus 138 ~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~ 217 (377)
.+..+|.|++...+..............+++..+ .+..+++-+-++...||...=+.++.+++....+. .+.+.
T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~---~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~---~~kVv 313 (732)
T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPF---KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEW---IDKVV 313 (732)
T ss_pred eeeecccccchHHhhccccchhHHHHHHHHhhhc---cCCceEecccccccccCchHHHHHHHHHHHhChhh---hceEE
Confidence 4667888999888766544444344455555554 46677878889999999999899998877644332 24566
Q ss_pred EEEEecCCCcccHHHHHHHHHHHh--------cCCC--CcEEEecC-c--CCHHHHHHhcCEEEecCCCCCCccchHHHH
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQ--------KKIQ--DRVHFVNK-T--LTVAPYLAAIDVLVQNSQAWGECFGRITIE 284 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~--------~~~~--~~v~~~g~-~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~E 284 (377)
++.+..+...+.+..++++..+.. .+-. ..|+++-. . .++.+++..+|+.+..+. .+|..++.+|
T Consensus 314 liqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~--rdGmnl~~~e 391 (732)
T KOG1050|consen 314 LIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSW--RDGMNLVFLE 391 (732)
T ss_pred EEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccc--ccccchhhhH
Confidence 666655444333333333333221 1111 22333332 2 778999999999999998 9999999999
Q ss_pred HHHcC----CcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHH
Q 017085 285 AMAFQ----LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 342 (377)
Q Consensus 285 a~a~g----~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~ 342 (377)
+.+|. .+.|.+...|..+...+ ...++.+.+ .++++.+|..+++.++.-.+++.
T Consensus 392 ~i~~~~~~~~~lVlsef~G~~~tl~d--~aivvnpw~--~~~~~~~i~~al~~s~~e~~~r~ 449 (732)
T KOG1050|consen 392 YILCQENKKSVLVLSEFIGDDTTLED--AAIVVNPWD--GDEFAILISKALTMSDEERELRE 449 (732)
T ss_pred HHHhhcccCCceEEeeeccccccccc--cCEEECCcc--hHHHHHHHHHHhhcCHHHHhhcc
Confidence 99885 67888887777777643 446778887 99999999999996655444444
No 146
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.65 E-value=0.035 Score=51.14 Aligned_cols=237 Identities=13% Similarity=0.056 Sum_probs=119.2
Q ss_pred ccceeEEeeeecccc---cchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhh
Q 017085 84 LPNVLWWIHEMRGHY---FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAK 160 (377)
Q Consensus 84 ~~~~v~~~h~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~ 160 (377)
++|++.+.++..+.. ........+++++.+.+--....++++ .+|++.+++.+.+.++ +.-+.....
T Consensus 148 gkpv~l~gqsiGPf~~~~~r~l~r~vl~~~~~ItvRD~~S~~~Lk-----~lGv~~~~v~~~aDpA---F~L~~~~~~-- 217 (426)
T PRK10017 148 KKPLYMIGHSVGPFQDEQFNQLANYVFGHCDALILRESVSLDLMK-----RSNITTAKVEHGVDTA---WLVDHHTED-- 217 (426)
T ss_pred CCCEEEECCcCCCcCCHHHHHHHHHHHhcCCEEEEccHHHHHHHH-----HhCCCccceEEecChh---hhCCccccc--
Confidence 357777777663321 122333445677777666665555554 7788777777765433 221111000
Q ss_pred hhhHHHHHHHhCCCCCCeEEEE-ecccccc-c----hhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCC--Cc-ccHH
Q 017085 161 RVLREHVRESLGVRNEDLLFAI-INSVSRG-K----GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM--NA-QTKF 231 (377)
Q Consensus 161 ~~~~~~~r~~~~~~~~~~~i~~-~G~~~~~-K----g~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~--~~-~~~~ 231 (377)
......+...++...+..+|++ +..+.+. + ..+...+.++++.+.+.+ .+++++++.... +. ....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~-----~g~~Vv~lp~~~~~~~~~~dD 292 (426)
T PRK10017 218 FTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIID-----EGYQVIALSTCTGIDSYNKDD 292 (426)
T ss_pred cccchhhhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHH-----CCCeEEEEecccCccCCCCch
Confidence 0000011111222222334433 3333221 1 123344555555555544 245555554321 00 0112
Q ss_pred HHHHHHHHHhcCCCCcEEEec-C--cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC-Ccccceec-
Q 017085 232 ESELRNYVMQKKIQDRVHFVN-K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVN- 306 (377)
Q Consensus 232 ~~~l~~~~~~~~~~~~v~~~g-~--~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~-~~~e~~~~- 306 (377)
..-..+..+.+.-+.+++++. . ..++..+++.||+++..=. ..++=|+++|+|+|+-... -...++.+
T Consensus 293 ~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl-------Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~l 365 (426)
T PRK10017 293 RMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRL-------HSAIISMNFGTPAIAINYEHKSAGIMQQL 365 (426)
T ss_pred HHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecc-------hHHHHHHHcCCCEEEeeehHHHHHHHHHc
Confidence 232344444444344444432 1 2567799999999875332 2567799999999987532 23333322
Q ss_pred CcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHH
Q 017085 307 GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 342 (377)
Q Consensus 307 ~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~ 342 (377)
+...++++..+.+.+++.+.+.+++++.+..++.-.
T Consensus 366 g~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~l~ 401 (426)
T PRK10017 366 GLPEMAIDIRHLLDGSLQAMVADTLGQLPALNARLA 401 (426)
T ss_pred CCccEEechhhCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 222344544443478899999999998876554433
No 147
>PLN02670 transferase, transferring glycosyl groups
Probab=97.56 E-value=0.0039 Score=58.08 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=73.3
Q ss_pred EEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccceecCcceeeecCCC----CC
Q 017085 248 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVNGTTGLLHPVGK----EG 319 (377)
Q Consensus 248 v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~~~~~~g~~~~~~~----~~ 319 (377)
+++.++..+. ++++...+..+-|. +.-++++||+++|+|+|+-. .......+...+.|..+...+ -+
T Consensus 341 ~vv~~W~PQ~-~IL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQV-KILSHESVGGFLTH----CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCHH-HHhcCcccceeeec----CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 6667876443 67877777444443 34578999999999999864 444444555556777664311 23
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHHHH---HHHHHhcCHHHHHHHHHHHHHHHH
Q 017085 320 ITPLAKNIVKLATHVERRLTMGKRGY---ERVKEIFQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 320 ~~~la~~i~~l~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~ 369 (377)
.+++++++.+++.+++ -.+++++++ +.+.++=..+.+++.+++.+.+..
T Consensus 416 ~e~i~~av~~vm~~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 416 SDSVAESVRLAMVDDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 7999999999997652 123334443 334444556666666666655543
No 148
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.53 E-value=0.00085 Score=63.79 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=86.0
Q ss_pred HHHHHHhCC-CCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcC
Q 017085 165 EHVRESLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 243 (377)
Q Consensus 165 ~~~r~~~~~-~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 243 (377)
+++.+.+.- ..+..+++..|+... ...+..++++.+..+ +.+. ++++.-++.. .. .
T Consensus 264 ~~~~~~~~~~~~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~-------~~~~-~~iW~~~~~~-----~~---------~ 320 (500)
T PF00201_consen 264 EELWNFLDSSGKKGVVYVSFGSIVS-SMPEEKLKEIAEAFE-------NLPQ-RFIWKYEGEP-----PE---------N 320 (500)
T ss_dssp HHHHHHTSTTTTTEEEEEE-TSSST-T-HHHHHHHHHHHHH-------CSTT-EEEEEETCSH-----GC---------H
T ss_pred cccchhhhccCCCCEEEEecCcccc-hhHHHHHHHHHHHHh-------hCCC-cccccccccc-----cc---------c
Confidence 334444433 245567777888753 234444444444333 2255 7777665521 11 1
Q ss_pred CCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC----CCcccceecCcceeeecCCCCC
Q 017085 244 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVNGTTGLLHPVGKEG 319 (377)
Q Consensus 244 ~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~----~~~~e~~~~~~~g~~~~~~~~~ 319 (377)
+++|+.+..+..+ .++|+...+-++-+. |.-+++.||+.+|+|+|+-.. ......+++.+.|...+..+-+
T Consensus 321 l~~n~~~~~W~PQ-~~lL~hp~v~~fitH----gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~ 395 (500)
T PF00201_consen 321 LPKNVLIVKWLPQ-NDLLAHPRVKLFITH----GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLT 395 (500)
T ss_dssp HHTTEEEESS--H-HHHHTSTTEEEEEES------HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-S
T ss_pred ccceEEEeccccc-hhhhhcccceeeeec----cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCc
Confidence 2357888888754 377876665444343 446789999999999999753 3345555566678888766555
Q ss_pred hhHHHHHHHHHhhCHHHHHH
Q 017085 320 ITPLAKNIVKLATHVERRLT 339 (377)
Q Consensus 320 ~~~la~~i~~l~~~~~~~~~ 339 (377)
.+++.++|.++++|+...+.
T Consensus 396 ~~~l~~ai~~vl~~~~y~~~ 415 (500)
T PF00201_consen 396 EEELRAAIREVLENPSYKEN 415 (500)
T ss_dssp HHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHH
Confidence 89999999999999864433
No 149
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=97.33 E-value=0.031 Score=46.90 Aligned_cols=299 Identities=10% Similarity=0.041 Sum_probs=131.0
Q ss_pred hHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHH-hhhcccEEEEcCchhhhHHHHH------hh
Q 017085 5 FLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-TALKADLIVLNTAVAGKWLDAV------LK 77 (377)
Q Consensus 5 ~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Div~~~~~~~~~~~~~~------~~ 77 (377)
....+.||+++++......-.. .-.+......++.+......... +.+++||+.+++..+...-.+. +.
T Consensus 12 ~wf~KNg~~~~i~~a~e~sftR----~dsH~~~~~si~k~~~~e~de~v~~vN~yDI~m~nSvPa~~vqE~~iNnY~kii 87 (355)
T PF11440_consen 12 DWFDKNGVEFTIVSADEKSFTR----PDSHDSKSFSIPKYLAKEYDETVKKVNDYDIVMFNSVPATKVQEAIINNYEKII 87 (355)
T ss_dssp HHHHHTT-EEEEEEETSS--TT----TTSSS-TTTEEEE-TTTHHHHHHHHHTSSSEEEEEE--BTTS-HHHHHHHHHHH
T ss_pred HHHHhcCCeeEEEEecccccCC----ccccccceeeeehhhHHHHHHHHHHhhccCEEEEecccCchHHHHHHHHHHHHH
Confidence 4456899999999866543111 11112222344445444554444 4478999999984422111111 11
Q ss_pred cCCCccccceeEEeeeecccccc--hhhhccccccceeeeeccchhhHhhhhhhh-hhhc---cCCCeEEEEcCChhhhH
Q 017085 78 EDVPRVLPNVLWWIHEMRGHYFK--LDYVKHLPLVAGAMIDSHVTAEYWKNRTRE-RLRI---KMPDTYVVHLGNSKELM 151 (377)
Q Consensus 78 ~~~~~~~~~~v~~~h~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~---~~~~~~vi~ngi~~~~~ 151 (377)
..+..- .++|...|+....... ..+...++.+|.|.+.+... ++.+.+++ .+.- ..+++..+|.....+..
T Consensus 88 ~~Ik~~-ik~V~~~Hdh~~lsI~rn~~le~~m~~~DvIfshs~~g--~f~kv~m~~l~Ps~~~l~~~i~~~p~v~nfqpp 164 (355)
T PF11440_consen 88 KKIKPS-IKVVGFMHDHNKLSIDRNPYLEGTMNEMDVIFSHSDNG--WFSKVLMKELLPSKVSLFDRIKKFPMVFNFQPP 164 (355)
T ss_dssp HCS-TT-SEEEEEE---SHHHHTTBSSHHHHHHH-SEEEES-TTS--HHHHTHHHHHS-SS--SSS-------EEE----
T ss_pred Hhcccc-ceeEEEeeccceeeccccccHHHHHHhhcEEEeccccc--hHHHHHHHhhccccCchhhhhhhcceeeecCCc
Confidence 122111 2456778876322221 22344567888888877633 22222221 1111 12344444433322211
Q ss_pred HHhhhhhhhhhhHHHHHHHhCCCCCCeEE---EEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcc
Q 017085 152 EVAEDNVAKRVLREHVRESLGVRNEDLLF---AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ 228 (377)
Q Consensus 152 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~i---~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~ 228 (377)
.+ -...|+.+-.+...+.. .|+||....||+..+++..++. |+. ++..-++-|-....
T Consensus 165 ~~----------i~~~Rstywkd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~---lK~-----~~~~t~~~GierS~- 225 (355)
T PF11440_consen 165 MD----------INKYRSTYWKDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKI---LKP-----AGFKTIMEGIERSP- 225 (355)
T ss_dssp B-----------HHHHHHHH---GGGSEEEEEEEE--SSGGG-HHHHHHHHHHT---TTT-----TT-EEEEE---SST-
T ss_pred cc----------HHHHHHHHhhhhHhhhcccceeeeeeeeecCcHHHhhhHHHh---cCC-----cchhHHhhhhhcCC-
Confidence 00 12345555444455555 7999999999999999988764 332 67787787754321
Q ss_pred cHHHHHHHHH-----------HHhcCC--CCcEEEecCc--CCHHHHHHhcCEEEecCCC----CCCccchHHHHHHHcC
Q 017085 229 TKFESELRNY-----------VMQKKI--QDRVHFVNKT--LTVAPYLAAIDVLVQNSQA----WGECFGRITIEAMAFQ 289 (377)
Q Consensus 229 ~~~~~~l~~~-----------~~~~~~--~~~v~~~g~~--~~~~~~~~~adv~l~ps~~----~~e~~~~~~~Ea~a~g 289 (377)
+... +.+. +.+..+ ...+.++|.- ++..+.|+.+-+...-+.. ..+.+-.+-+|..|||
T Consensus 226 -A~~~-i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~G 303 (355)
T PF11440_consen 226 -AKIS-IKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVG 303 (355)
T ss_dssp -HHHH-HHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCT
T ss_pred -ceee-eecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeec
Confidence 1211 1111 001111 1236777753 7888999998887654332 1334678899999999
Q ss_pred CcEE-EeCCCCcc-------cceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 290 LPVL-GTAAGGTT-------EIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 290 ~PvI-~s~~~~~~-------e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
+-.| -..+|... -++.+.-..+.++..| .++-.+.|.++.++
T Consensus 304 tIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~d--le~T~ekl~E~a~~ 353 (355)
T PF11440_consen 304 TIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDEND--LESTVEKLIEVANN 353 (355)
T ss_dssp SEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTS--HHHHHHHHHHHHT-
T ss_pred eeeeeeccccccceeeecCceeeccCcceeEeccch--HHHHHHHHHHHhcc
Confidence 7555 33333222 2232333345555544 56656666555443
No 150
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.33 E-value=0.01 Score=55.61 Aligned_cols=146 Identities=16% Similarity=0.096 Sum_probs=83.3
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
+...+++..|..... ..+.+-+.+. .|.+ .+..++++..+. ...+.+.. .+++.+.++.
T Consensus 273 ~~~vvyvsfGs~~~~-~~~~~~~~~~----~l~~-----~~~~~lw~~~~~------~~~~~~~~-----~~~~~v~~w~ 331 (459)
T PLN02448 273 EGSVLYVSLGSFLSV-SSAQMDEIAA----GLRD-----SGVRFLWVARGE------ASRLKEIC-----GDMGLVVPWC 331 (459)
T ss_pred CCceEEEeecccccC-CHHHHHHHHH----HHHh-----CCCCEEEEEcCc------hhhHhHhc-----cCCEEEeccC
Confidence 345677777876431 2222222222 2222 567888776542 11122221 2467777876
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccceecC-cceeeecC-----CCCChhHHH
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVNG-TTGLLHPV-----GKEGITPLA 324 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~~~~-~~g~~~~~-----~~~~~~~la 324 (377)
. -.++++..++..+-+ .+..++++||+++|+|+|+-. .......+.+. +.|+-+.. +..+.++++
T Consensus 332 p-Q~~iL~h~~v~~fvt----HgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~ 406 (459)
T PLN02448 332 D-QLKVLCHSSVGGFWT----HCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIA 406 (459)
T ss_pred C-HHHHhccCccceEEe----cCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHH
Confidence 3 346788888744333 334568999999999999864 44444555442 45665531 111379999
Q ss_pred HHHHHHhhCH-HHHHHHHHHHHH
Q 017085 325 KNIVKLATHV-ERRLTMGKRGYE 346 (377)
Q Consensus 325 ~~i~~l~~~~-~~~~~~~~~~~~ 346 (377)
+++.+++.++ +.-+++++++.+
T Consensus 407 ~av~~vl~~~~~~~~~~r~~a~~ 429 (459)
T PLN02448 407 ELVKRFMDLESEEGKEMRRRAKE 429 (459)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999864 334455555443
No 151
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.27 E-value=0.098 Score=46.07 Aligned_cols=198 Identities=15% Similarity=0.035 Sum_probs=105.3
Q ss_pred hhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhc
Q 017085 55 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI 134 (377)
Q Consensus 55 ~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 134 (377)
...||+|+..+..+......+.+..- . .++.|...+ +... ...+|.++++.+.-..
T Consensus 55 ~~~pdLiIsaGr~t~~~~~~l~r~~g-g-~~~~V~i~~---P~~~-------~~~FDlvi~p~HD~~~------------ 110 (311)
T PF06258_consen 55 PPWPDLIISAGRRTAPAALALRRASG-G-RTKTVQIMD---PRLP-------PRPFDLVIVPEHDRLP------------ 110 (311)
T ss_pred CCCCcEEEECCCchHHHHHHHHHHcC-C-CceEEEEcC---CCCC-------ccccCEEEECcccCcC------------
Confidence 36799999998766554444333111 0 012333222 2111 3566888887765211
Q ss_pred cCCCeEE---EEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccc--hhHHHHHHHHHHHHHHhhh
Q 017085 135 KMPDTYV---VHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK--GQDLFLHSFYESLELIKEK 209 (377)
Q Consensus 135 ~~~~~~v---i~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~K--g~~~ll~a~~~l~~~l~~~ 209 (377)
..+++.. .+|.++....... +..+...++-.+.+.+.+.+|.-+..- +.+..-+.+..+.+..++
T Consensus 111 ~~~Nvl~t~ga~~~i~~~~l~~a---------~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~- 180 (311)
T PF06258_consen 111 RGPNVLPTLGAPNRITPERLAEA---------AAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAA- 180 (311)
T ss_pred CCCceEecccCCCcCCHHHHHHH---------HHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHh-
Confidence 1233333 3355555443322 334445555445556666667533222 333223333333333332
Q ss_pred cccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHH
Q 017085 210 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 287 (377)
Q Consensus 210 ~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a 287 (377)
.+..+.|..+..-.. +..+.|.+..+ -...+.+.... +-+..+|+.||.++.+.. .-..+.||++
T Consensus 181 ----~~~~~~vttSRRTp~-~~~~~L~~~~~---~~~~~~~~~~~~~nPy~~~La~ad~i~VT~D-----SvSMvsEA~~ 247 (311)
T PF06258_consen 181 ----YGGSLLVTTSRRTPP-EAEAALRELLK---DNPGVYIWDGTGENPYLGFLAAADAIVVTED-----SVSMVSEAAA 247 (311)
T ss_pred ----CCCeEEEEcCCCCcH-HHHHHHHHhhc---CCCceEEecCCCCCcHHHHHHhCCEEEEcCc-----cHHHHHHHHH
Confidence 347788877742111 23444444443 23456344432 458899999999998765 3446789999
Q ss_pred cCCcEEEeCCCC
Q 017085 288 FQLPVLGTAAGG 299 (377)
Q Consensus 288 ~g~PvI~s~~~~ 299 (377)
.|+||.+...++
T Consensus 248 tG~pV~v~~l~~ 259 (311)
T PF06258_consen 248 TGKPVYVLPLPG 259 (311)
T ss_pred cCCCEEEecCCC
Confidence 999999987665
No 152
>PLN00414 glycosyltransferase family protein
Probab=97.19 E-value=0.018 Score=53.49 Aligned_cols=154 Identities=8% Similarity=-0.048 Sum_probs=87.3
Q ss_pred CCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCC----CcccHHHHHHHHHHHhcCCCCcEE
Q 017085 174 RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM----NAQTKFESELRNYVMQKKIQDRVH 249 (377)
Q Consensus 174 ~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~----~~~~~~~~~l~~~~~~~~~~~~v~ 249 (377)
+++..+++.+|++.... .+.+.+.+.-|.. .+..|+++=... +......+.+.+.++.. .++
T Consensus 250 ~~~sVvyvsfGS~~~~~-~~q~~e~a~gL~~---------s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~----g~v 315 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFE-KDQFQEFCLGMEL---------TGLPFLIAVMPPKGSSTVQEALPEGFEERVKGR----GIV 315 (446)
T ss_pred CCCceEEEeecccccCC-HHHHHHHHHHHHH---------cCCCeEEEEecCCCcccchhhCChhHHHHhcCC----CeE
Confidence 35567777788875332 2445555443322 455654332211 00111233444444432 355
Q ss_pred EecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCccccee-cCcceeeecCC---CCChh
Q 017085 250 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVV-NGTTGLLHPVG---KEGIT 321 (377)
Q Consensus 250 ~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~~-~~~~g~~~~~~---~~~~~ 321 (377)
+.++..+. ++++.+.+..+-+ .+.-++++||+.+|+|+|+-. .......+. .-+.|..+... ..+.+
T Consensus 316 v~~w~PQ~-~vL~h~~v~~fvt----H~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~ 390 (446)
T PLN00414 316 WEGWVEQP-LILSHPSVGCFVN----HCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKE 390 (446)
T ss_pred EeccCCHH-HHhcCCccceEEe----cCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHH
Confidence 66776443 6777775533333 334578999999999999864 334444553 34567666421 12389
Q ss_pred HHHHHHHHHhhCH-HHHHHHHHHHHH
Q 017085 322 PLAKNIVKLATHV-ERRLTMGKRGYE 346 (377)
Q Consensus 322 ~la~~i~~l~~~~-~~~~~~~~~~~~ 346 (377)
++++++.+++.++ +..+++++++.+
T Consensus 391 ~i~~~v~~~m~~~~e~g~~~r~~a~~ 416 (446)
T PLN00414 391 SLRDTVKSVMDKDSEIGNLVKRNHKK 416 (446)
T ss_pred HHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 9999999999764 445566666654
No 153
>PLN03004 UDP-glycosyltransferase
Probab=97.19 E-value=0.01 Score=55.05 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=59.9
Q ss_pred CcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe----CCCCcccceec-CcceeeecCC---C
Q 017085 246 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT----AAGGTTEIVVN-GTTGLLHPVG---K 317 (377)
Q Consensus 246 ~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s----~~~~~~e~~~~-~~~g~~~~~~---~ 317 (377)
.++.+.++..+. ++++.+++..+-+. +.-++++||+++|+|+|+- |.......+.+ -+.|+.++.. .
T Consensus 334 ~g~~v~~W~PQ~-~iL~H~~v~~FvTH----~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 408 (451)
T PLN03004 334 KGMVVKSWAPQV-PVLNHKAVGGFVTH----CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGF 408 (451)
T ss_pred CcEEEEeeCCHH-HHhCCCccceEecc----CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCc
Confidence 468888886444 68899998554443 3456899999999999986 44455555543 3577776532 1
Q ss_pred CChhHHHHHHHHHhhCHH
Q 017085 318 EGITPLAKNIVKLATHVE 335 (377)
Q Consensus 318 ~~~~~la~~i~~l~~~~~ 335 (377)
.+.+++++++.+++++++
T Consensus 409 ~~~e~l~~av~~vm~~~~ 426 (451)
T PLN03004 409 VSSTEVEKRVQEIIGECP 426 (451)
T ss_pred cCHHHHHHHHHHHhcCHH
Confidence 238999999999998754
No 154
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.14 E-value=0.021 Score=49.77 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=57.7
Q ss_pred EEEEeccccccc--hhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--
Q 017085 179 LFAIINSVSRGK--GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 254 (377)
Q Consensus 179 ~i~~~G~~~~~K--g~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-- 254 (377)
+++..|.-.+.| ..+.+.+.+..+.+ .+++++++|+. +..+..++..+..+-...+.+.|..
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~---------~~~~ivl~g~~-----~e~~~~~~i~~~~~~~~~~~~~~~~~l 189 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLA---------RGARVVLTGGP-----AERELAEEIAAALGGPRVVNLAGKTSL 189 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHH---------CCCEEEEEech-----hhHHHHHHHHHhcCCCccccCcCCCCH
Confidence 333444333333 33455555554433 36888998875 2334444444443222334556653
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++..+++.||+++.+.. | .+-=|.++|+|+|+--
T Consensus 190 ~e~~~li~~~~l~I~~Ds------g-~~HlA~a~~~p~i~l~ 224 (279)
T cd03789 190 RELAALLARADLVVTNDS------G-PMHLAAALGTPTVALF 224 (279)
T ss_pred HHHHHHHHhCCEEEeeCC------H-HHHHHHHcCCCEEEEE
Confidence 789999999999997643 3 3344579999999753
No 155
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.14 E-value=0.026 Score=53.25 Aligned_cols=85 Identities=12% Similarity=-0.029 Sum_probs=55.1
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC----CCcccceec-Ccceeee------
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVN-GTTGLLH------ 313 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~----~~~~e~~~~-~~~g~~~------ 313 (377)
+.++++.++..+ .++|+.+++.++-+. +.-++++||+.+|+|+|+-.. ......+.+ -+.|+-+
T Consensus 344 ~~g~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 418 (482)
T PLN03007 344 GKGLIIRGWAPQ-VLILDHQATGGFVTH----CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLV 418 (482)
T ss_pred cCCEEEecCCCH-HHHhccCccceeeec----CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccc
Confidence 357888888744 478888887444443 335689999999999998643 333332221 1233332
Q ss_pred --cCCCCChhHHHHHHHHHhhCH
Q 017085 314 --PVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 314 --~~~~~~~~~la~~i~~l~~~~ 334 (377)
+....+.+++++++++++.++
T Consensus 419 ~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 419 KVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred ccccCcccHHHHHHHHHHHhcCc
Confidence 111123889999999999875
No 156
>PLN02764 glycosyltransferase family protein
Probab=97.10 E-value=0.018 Score=53.34 Aligned_cols=94 Identities=12% Similarity=-0.075 Sum_probs=58.4
Q ss_pred EEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC----CCcccceec-CcceeeecCC---CCC
Q 017085 248 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIVVN-GTTGLLHPVG---KEG 319 (377)
Q Consensus 248 v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~----~~~~e~~~~-~~~g~~~~~~---~~~ 319 (377)
+++.++..+ .++++...+..+-+ .+..++++||+.+|+|+|+-.. ......+.+ -+.|+.+... +.+
T Consensus 319 ~v~~~W~PQ-~~vL~h~~v~~Fvt----H~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~ 393 (453)
T PLN02764 319 VVWGGWVQQ-PLILSHPSVGCFVS----HCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFS 393 (453)
T ss_pred cEEeCCCCH-HHHhcCcccCeEEe----cCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccC
Confidence 566677633 36777765533333 3345799999999999998643 334445532 3456554221 223
Q ss_pred hhHHHHHHHHHhhCH-HHHHHHHHHHHH
Q 017085 320 ITPLAKNIVKLATHV-ERRLTMGKRGYE 346 (377)
Q Consensus 320 ~~~la~~i~~l~~~~-~~~~~~~~~~~~ 346 (377)
.+++.+++.+++.++ +..+++++++.+
T Consensus 394 ~e~i~~av~~vm~~~~~~g~~~r~~a~~ 421 (453)
T PLN02764 394 KESLRDAINSVMKRDSEIGNLVKKNHTK 421 (453)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 899999999999764 444555555443
No 157
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.01 E-value=0.019 Score=53.49 Aligned_cols=93 Identities=17% Similarity=0.107 Sum_probs=59.5
Q ss_pred CcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccceecC-cceeeecCCCCCh
Q 017085 246 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVNG-TTGLLHPVGKEGI 320 (377)
Q Consensus 246 ~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~~~~-~~g~~~~~~~~~~ 320 (377)
++..+.++..+. ++++..++..+-+. +.-++++||+++|+|+|+-. .......+.+. +.|+.+. ++.+.
T Consensus 324 ~~g~v~~w~PQ~-~iL~h~~v~~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~ 397 (451)
T PLN02410 324 GRGYIVKWAPQK-EVLSHPAVGGFWSH----CGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDR 397 (451)
T ss_pred CCeEEEccCCHH-HHhCCCccCeeeec----CchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccH
Confidence 566777876433 57777666333332 33468999999999999864 33444444333 5676664 22238
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHHHH
Q 017085 321 TPLAKNIVKLATHVERRLTMGKRGY 345 (377)
Q Consensus 321 ~~la~~i~~l~~~~~~~~~~~~~~~ 345 (377)
+++++++.+++.+++ -++++++++
T Consensus 398 ~~v~~av~~lm~~~~-~~~~r~~a~ 421 (451)
T PLN02410 398 GAVERAVKRLMVEEE-GEEMRKRAI 421 (451)
T ss_pred HHHHHHHHHHHcCCc-HHHHHHHHH
Confidence 999999999998754 334444443
No 158
>PLN02208 glycosyltransferase family protein
Probab=97.00 E-value=0.026 Score=52.36 Aligned_cols=96 Identities=8% Similarity=-0.071 Sum_probs=62.9
Q ss_pred CcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccceec-CcceeeecCCC---
Q 017085 246 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVN-GTTGLLHPVGK--- 317 (377)
Q Consensus 246 ~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~~~-~~~g~~~~~~~--- 317 (377)
.++++.++..+. ++++...+.++-|. +.-++++||+++|+|+|+-. ......++.+ -+.|..+...+
T Consensus 311 ~g~~v~~W~PQ~-~iL~H~~v~~FvtH----cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~ 385 (442)
T PLN02208 311 RGVVWGGWVQQP-LILDHPSIGCFVNH----CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGW 385 (442)
T ss_pred CCcEeeccCCHH-HHhcCCccCeEEcc----CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCc
Confidence 467777876444 67888877555454 33578999999999999864 3334444333 35676664321
Q ss_pred CChhHHHHHHHHHhhCH-HHHHHHHHHHHH
Q 017085 318 EGITPLAKNIVKLATHV-ERRLTMGKRGYE 346 (377)
Q Consensus 318 ~~~~~la~~i~~l~~~~-~~~~~~~~~~~~ 346 (377)
-+.++++++|.++++++ +..+++++++.+
T Consensus 386 ~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~ 415 (442)
T PLN02208 386 FSKESLSNAIKSVMDKDSDLGKLVRSNHTK 415 (442)
T ss_pred CcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 23799999999999765 344555555544
No 159
>PLN02562 UDP-glycosyltransferase
Probab=96.94 E-value=0.039 Score=51.41 Aligned_cols=88 Identities=14% Similarity=-0.007 Sum_probs=59.9
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe----CCCCcccceec-CcceeeecCCCCC
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT----AAGGTTEIVVN-GTTGLLHPVGKEG 319 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s----~~~~~~e~~~~-~~~g~~~~~~~~~ 319 (377)
++++.+.++. .-.++++..++.++-+. +.-++++||+.+|+|+|+- |.......+.+ -+.|+-+...+
T Consensus 327 ~~~~~v~~w~-PQ~~iL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~-- 399 (448)
T PLN02562 327 SKQGKVVSWA-PQLEVLKHQAVGCYLTH----CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFG-- 399 (448)
T ss_pred ccCEEEEecC-CHHHHhCCCccceEEec----CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCC--
Confidence 3577778876 33467888776444443 3356899999999999976 44445555543 24566554334
Q ss_pred hhHHHHHHHHHhhCHHHHHH
Q 017085 320 ITPLAKNIVKLATHVERRLT 339 (377)
Q Consensus 320 ~~~la~~i~~l~~~~~~~~~ 339 (377)
.+++++++++++.+++.+++
T Consensus 400 ~~~l~~~v~~~l~~~~~r~~ 419 (448)
T PLN02562 400 QKEVEEGLRKVMEDSGMGER 419 (448)
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 89999999999988654433
No 160
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=96.92 E-value=0.12 Score=45.46 Aligned_cols=72 Identities=11% Similarity=-0.036 Sum_probs=41.9
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEE
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 294 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~ 294 (377)
+.+++++....+. ..+..++....+.-+..+......+++..+++.||+++.... ..++=|+.+|+|+|+
T Consensus 205 g~~v~~i~~~~~~---D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~Rl-------H~~I~A~~~gvP~i~ 274 (298)
T TIGR03609 205 GAFVLFLPFQQPQ---DLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRL-------HALILAAAAGVPFVA 274 (298)
T ss_pred CCeEEEEeCCcch---hHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEech-------HHHHHHHHcCCCEEE
Confidence 5666665543222 223333333433323344322223688899999998875543 246779999999997
Q ss_pred eC
Q 017085 295 TA 296 (377)
Q Consensus 295 s~ 296 (377)
-.
T Consensus 275 i~ 276 (298)
T TIGR03609 275 LS 276 (298)
T ss_pred ee
Confidence 64
No 161
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.89 E-value=0.0045 Score=48.83 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=30.7
Q ss_pred ccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhH
Q 017085 107 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELM 151 (377)
Q Consensus 107 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~ 151 (377)
+..+|..++++.+.++.+-..+ . +|+.||+-|||++.+
T Consensus 133 l~~~D~~isPT~wQ~~~fP~~~----r---~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 133 LEQADAGISPTRWQRSQFPAEF----R---SKISVIHDGIDTDRF 170 (171)
T ss_pred HHhCCcCcCCCHHHHHhCCHHH----H---cCcEEeecccchhhc
Confidence 3578899999999988777633 2 689999999998754
No 162
>PLN02210 UDP-glucosyl transferase
Probab=96.85 E-value=0.034 Score=51.89 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=55.5
Q ss_pred cEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccceec-CcceeeecCC----C
Q 017085 247 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVN-GTTGLLHPVG----K 317 (377)
Q Consensus 247 ~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~~~-~~~g~~~~~~----~ 317 (377)
+..+.++..+. ++++.+++..+-+. +.-++++||+.+|+|+|+-. .......+.+ -+.|..+... .
T Consensus 325 ~g~v~~w~PQ~-~iL~h~~vg~FitH----~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~ 399 (456)
T PLN02210 325 QGVVLEWSPQE-KILSHMAISCFVTH----CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGE 399 (456)
T ss_pred CeEEEecCCHH-HHhcCcCcCeEEee----CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCc
Confidence 44566776443 68888885444343 23458999999999999864 3444445544 4577666421 1
Q ss_pred CChhHHHHHHHHHhhCHH
Q 017085 318 EGITPLAKNIVKLATHVE 335 (377)
Q Consensus 318 ~~~~~la~~i~~l~~~~~ 335 (377)
-+.+++++++.+++.+++
T Consensus 400 ~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 400 LKVEEVERCIEAVTEGPA 417 (456)
T ss_pred CCHHHHHHHHHHHhcCch
Confidence 237899999999997643
No 163
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=96.85 E-value=0.1 Score=49.10 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=51.9
Q ss_pred CcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCcEEEe----CCCCcccceec-CcceeeecCC--
Q 017085 246 DRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT----AAGGTTEIVVN-GTTGLLHPVG-- 316 (377)
Q Consensus 246 ~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s----~~~~~~e~~~~-~~~g~~~~~~-- 316 (377)
.++.+.++..+ .+++.. +++|+ + .+..++++||+++|+|+|+- |.......+.+ -+.|.....+
T Consensus 343 ~g~~v~~w~PQ-~~vL~h~~v~~fv--t----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~ 415 (477)
T PLN02863 343 RGLVIRGWAPQ-VAILSHRAVGAFL--T----HCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGAD 415 (477)
T ss_pred CCEEecCCCCH-HHHhcCCCcCeEE--e----cCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCC
Confidence 46778888744 467776 44555 3 33456899999999999986 44444444332 3567655221
Q ss_pred -CCChhHHHHHHHHHhh
Q 017085 317 -KEGITPLAKNIVKLAT 332 (377)
Q Consensus 317 -~~~~~~la~~i~~l~~ 332 (377)
..+.+++++++.+++.
T Consensus 416 ~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 416 TVPDSDELARVFMESVS 432 (477)
T ss_pred CCcCHHHHHHHHHHHhh
Confidence 1127899999998884
No 164
>PLN02167 UDP-glycosyltransferase family protein
Probab=96.80 E-value=0.072 Score=50.15 Aligned_cols=83 Identities=13% Similarity=-0.025 Sum_probs=51.5
Q ss_pred cEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccc-eecCcceeeecCC-----
Q 017085 247 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEI-VVNGTTGLLHPVG----- 316 (377)
Q Consensus 247 ~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~-~~~~~~g~~~~~~----- 316 (377)
+..+.++.. -.++++...+..+-+ -+.-++++||+++|+|+|+-. ....... +..-+.|..+...
T Consensus 341 rg~v~~w~P-Q~~iL~h~~vg~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~ 415 (475)
T PLN02167 341 RGLVCGWAP-QVEILAHKAIGGFVS----HCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAY 415 (475)
T ss_pred CeeeeccCC-HHHHhcCcccCeEEe----eCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccccc
Confidence 445667763 346777755433223 233458999999999999864 3334332 3344567665321
Q ss_pred --CCChhHHHHHHHHHhhCH
Q 017085 317 --KEGITPLAKNIVKLATHV 334 (377)
Q Consensus 317 --~~~~~~la~~i~~l~~~~ 334 (377)
..+.+++++++.+++.+.
T Consensus 416 ~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 416 GEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred CCcccHHHHHHHHHHHhcCC
Confidence 113789999999999754
No 165
>PLN02173 UDP-glucosyl transferase family protein
Probab=96.72 E-value=0.05 Score=50.54 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=62.2
Q ss_pred CcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccceecC-cceeeecCCC---
Q 017085 246 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVNG-TTGLLHPVGK--- 317 (377)
Q Consensus 246 ~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~~~~-~~g~~~~~~~--- 317 (377)
+++.+.++..+. ++++...+..+-+. +..++++||+++|+|+|+-. .......+.+. +.|+-+...+
T Consensus 317 ~~~~i~~W~PQ~-~iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 317 DKSLVLKWSPQL-QVLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred CceEEeCCCCHH-HHhCCCccceEEec----CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCC
Confidence 568888887544 68888886555453 34579999999999999864 33444455442 4666553211
Q ss_pred -CChhHHHHHHHHHhhCHHHHHHHHHHHHH
Q 017085 318 -EGITPLAKNIVKLATHVERRLTMGKRGYE 346 (377)
Q Consensus 318 -~~~~~la~~i~~l~~~~~~~~~~~~~~~~ 346 (377)
-+.+++++++.+++.+++ .+++++++.+
T Consensus 392 ~~~~e~v~~av~~vm~~~~-~~~~r~~a~~ 420 (449)
T PLN02173 392 IAKREEIEFSIKEVMEGEK-SKEMKENAGK 420 (449)
T ss_pred cccHHHHHHHHHHHhcCCh-HHHHHHHHHH
Confidence 127999999999997643 2444444443
No 166
>PLN02555 limonoid glucosyltransferase
Probab=96.71 E-value=0.091 Score=49.32 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=59.2
Q ss_pred CCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccceecC-cceeeec---
Q 017085 245 QDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVNG-TTGLLHP--- 314 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~~~~-~~g~~~~--- 314 (377)
.+++.+.++..+ .++++. +.+|+ + .+.-++++||+.+|+|+|+-. .......+.+. +.|+.+.
T Consensus 336 ~~~g~v~~W~PQ-~~iL~H~~v~~Fv--t----H~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~ 408 (480)
T PLN02555 336 GDKGKIVQWCPQ-EKVLAHPSVACFV--T----HCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGE 408 (480)
T ss_pred CCceEEEecCCH-HHHhCCCccCeEE--e----cCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCc
Confidence 457777787644 356744 44555 3 334568999999999999864 33344444443 5666652
Q ss_pred --CCCCChhHHHHHHHHHhhCHHHHHHHHHHHHH
Q 017085 315 --VGKEGITPLAKNIVKLATHVERRLTMGKRGYE 346 (377)
Q Consensus 315 --~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~ 346 (377)
.+..+.+++++++.+++.+++ -++++++|++
T Consensus 409 ~~~~~v~~~~v~~~v~~vm~~~~-g~~~r~ra~~ 441 (480)
T PLN02555 409 AENKLITREEVAECLLEATVGEK-AAELKQNALK 441 (480)
T ss_pred cccCcCcHHHHHHHHHHHhcCch-HHHHHHHHHH
Confidence 112237899999999997643 3455555544
No 167
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.68 E-value=0.14 Score=45.96 Aligned_cols=100 Identities=20% Similarity=0.195 Sum_probs=64.9
Q ss_pred CCeEEEEec-cccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 176 EDLLFAIIN-SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 176 ~~~~i~~~G-~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
.+.+++..| +....|+.. .+-++++.+.|.+ ..++++++|+. ...+..++.....+- .+.+.|..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp--~e~~~~l~~~l~~-----~~~~Vvl~g~~-----~e~e~~~~i~~~~~~--~~~l~~k~ 240 (334)
T COG0859 175 RPYIVINPGASRGSAKRWP--LEHYAELAELLIA-----KGYQVVLFGGP-----DEEERAEEIAKGLPN--AVILAGKT 240 (334)
T ss_pred CCeEEEeccccccccCCCC--HHHHHHHHHHHHH-----CCCEEEEecCh-----HHHHHHHHHHHhcCC--ccccCCCC
Confidence 456777777 555666654 3344444445544 34889999987 345555555555432 23366654
Q ss_pred --CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 255 --LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 255 --~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++..+++.||+++.+.. | .+-=|.|.|+|+|+--
T Consensus 241 sL~e~~~li~~a~l~I~~DS------g-~~HlAaA~~~P~I~iy 277 (334)
T COG0859 241 SLEELAALIAGADLVIGNDS------G-PMHLAAALGTPTIALY 277 (334)
T ss_pred CHHHHHHHHhcCCEEEccCC------h-HHHHHHHcCCCEEEEE
Confidence 889999999999997654 2 2345889999999863
No 168
>PLN02554 UDP-glycosyltransferase family protein
Probab=96.66 E-value=0.077 Score=50.04 Aligned_cols=85 Identities=13% Similarity=0.039 Sum_probs=52.9
Q ss_pred CcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcc-cceecCcceeeecC-----
Q 017085 246 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTT-EIVVNGTTGLLHPV----- 315 (377)
Q Consensus 246 ~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~-e~~~~~~~g~~~~~----- 315 (377)
+++.+.++..+ .++++...+..+-+ .+.-++++||+.+|+|+|+-. ..... ..++.-+.|..+..
T Consensus 342 ~~g~v~~W~PQ-~~iL~H~~v~~Fvt----H~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~ 416 (481)
T PLN02554 342 DIGKVIGWAPQ-VAVLAKPAIGGFVT----HCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGD 416 (481)
T ss_pred cCceEEeeCCH-HHHhCCcccCcccc----cCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecccccc
Confidence 46666777643 36774444433323 333568999999999999864 33344 23444456666531
Q ss_pred ------CCCChhHHHHHHHHHhh-CHH
Q 017085 316 ------GKEGITPLAKNIVKLAT-HVE 335 (377)
Q Consensus 316 ------~~~~~~~la~~i~~l~~-~~~ 335 (377)
...+.++++++|.+++. +++
T Consensus 417 ~~~~~~~~~~~e~l~~av~~vm~~~~~ 443 (481)
T PLN02554 417 LLAGEMETVTAEEIERGIRCLMEQDSD 443 (481)
T ss_pred ccccccCeEcHHHHHHHHHHHhcCCHH
Confidence 11237899999999996 543
No 169
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=96.59 E-value=0.13 Score=48.23 Aligned_cols=83 Identities=10% Similarity=-0.038 Sum_probs=56.3
Q ss_pred cEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccce-ecCcceeeecCC--CCC
Q 017085 247 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIV-VNGTTGLLHPVG--KEG 319 (377)
Q Consensus 247 ~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~-~~~~~g~~~~~~--~~~ 319 (377)
.+++.++..+. ++++...+..+-+. +.-++++||+.+|+|+|+-. .......+ ..-+.|...+.. ..+
T Consensus 339 g~vv~~W~PQ~-~iL~h~~vg~FitH----~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 339 GFVVPSWAPQA-EILAHQAVGGFLTH----CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVIS 413 (481)
T ss_pred CEEEeecCCHH-HHhCCcccCeeEec----CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCccc
Confidence 57888886443 67788777443343 34568999999999999864 34444454 244567666431 124
Q ss_pred hhHHHHHHHHHhhCH
Q 017085 320 ITPLAKNIVKLATHV 334 (377)
Q Consensus 320 ~~~la~~i~~l~~~~ 334 (377)
.++++++|.+++.++
T Consensus 414 ~~~l~~av~~vm~~~ 428 (481)
T PLN02992 414 RSKIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHHHHhcCC
Confidence 899999999999763
No 170
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=96.41 E-value=0.011 Score=47.13 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=58.2
Q ss_pred chhHHHhhhcccEEEEcCchhhhH-HHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhh
Q 017085 48 GQETINTALKADLIVLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKN 126 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 126 (377)
.+..++++.+||+|++.++.+... +..+...+... .+|++..+-++.. -.-.+.-+.+|..++.|+.+++.+.
T Consensus 80 ~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~-~~p~~tvvTD~~~----~H~~W~~~~~D~y~Vase~~~~~l~- 153 (169)
T PF06925_consen 80 RLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLP-NIPVVTVVTDFDT----VHPFWIHPGVDRYFVASEEVKEELI- 153 (169)
T ss_pred HHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhccc-CCcEEEEEcCCCC----CCcCeecCCCCEEEECCHHHHHHHH-
Confidence 455666789999999999986666 55444332211 2355555555421 0112234788999999999988777
Q ss_pred hhhhhhhccCCCeEEEEcC
Q 017085 127 RTRERLRIKMPDTYVVHLG 145 (377)
Q Consensus 127 ~~~~~~~~~~~~~~vi~ng 145 (377)
+.|++++++.+...+
T Consensus 154 ----~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 154 ----ERGIPPERIHVTGIP 168 (169)
T ss_pred ----HcCCChhHEEEeCcc
Confidence 578999988887544
No 171
>PLN00164 glucosyltransferase; Provisional
Probab=96.32 E-value=0.2 Score=47.27 Aligned_cols=95 Identities=12% Similarity=-0.006 Sum_probs=59.5
Q ss_pred cEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe----CCCCcccce-ecCcceeeecCC-----
Q 017085 247 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT----AAGGTTEIV-VNGTTGLLHPVG----- 316 (377)
Q Consensus 247 ~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s----~~~~~~e~~-~~~~~g~~~~~~----- 316 (377)
.+.+.++..+ .++++.+++..+-+. +.-++++||+.+|+|+|+- |.......+ +.-+.|+.+...
T Consensus 340 g~~v~~w~PQ-~~iL~h~~vg~fvtH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~ 414 (480)
T PLN00164 340 GLVWPTWAPQ-KEILAHAAVGGFVTH----CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDN 414 (480)
T ss_pred CeEEeecCCH-HHHhcCcccCeEEee----cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCC
Confidence 3566677533 468888886444443 2346899999999999986 444444443 333567665321
Q ss_pred CCChhHHHHHHHHHhhCHH-HHHHHHHHHHH
Q 017085 317 KEGITPLAKNIVKLATHVE-RRLTMGKRGYE 346 (377)
Q Consensus 317 ~~~~~~la~~i~~l~~~~~-~~~~~~~~~~~ 346 (377)
..+.++++++|.+++.+++ ..+++++++.+
T Consensus 415 ~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~ 445 (480)
T PLN00164 415 FVEAAELERAVRSLMGGGEEEGRKAREKAAE 445 (480)
T ss_pred cCcHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 0137899999999997643 24445444443
No 172
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=96.26 E-value=0.065 Score=46.39 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=62.3
Q ss_pred CCCeEEEEecccccc-------chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCc
Q 017085 175 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 247 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~-------Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (377)
.++..|+++...... .....+++.+..+.+ +.|++++++--.......... ....+..-..+
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~-------~~p~~~lvvK~HP~~~~~~~~----~~~~~~~~~~~ 183 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAK-------ENPDAKLVVKPHPDERGGNKY----SYLEELPNLPN 183 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHH-------HCCCCEEEEEECchhhCCCCh----hHhhhhhcCCC
Confidence 444555666665443 234455566555443 337888776544211000011 22222211245
Q ss_pred EEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC
Q 017085 248 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 248 v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~ 298 (377)
+.+......+.+++..||.++.-+ +.+.+||+.+|+||++...+
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~Vvtin-------StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDAVVTIN-------STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred eEEECCCCCHHHHHHhCCEEEEEC-------CHHHHHHHHcCCceEEecCc
Confidence 666665568999999999887433 45899999999999997644
No 173
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=96.15 E-value=0.19 Score=46.93 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=55.6
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccceecC-cceeeecC--CC
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVNG-TTGLLHPV--GK 317 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~~~~-~~g~~~~~--~~ 317 (377)
.++..+.++..+. ++++..++.++-+. +..++++||+.+|+|+|+-. .......+.+. +.|+-+.. .+
T Consensus 326 ~~~g~v~~W~PQ~-~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 326 EEVGMIVSWCSQI-EVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred cCCeEEEeeCCHH-HHhCCcccceEEee----CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCC
Confidence 3566777876443 68888887555453 34568999999999999864 33344444331 24444421 11
Q ss_pred -CChhHHHHHHHHHhhCHH
Q 017085 318 -EGITPLAKNIVKLATHVE 335 (377)
Q Consensus 318 -~~~~~la~~i~~l~~~~~ 335 (377)
.+.+++++++.++++++.
T Consensus 401 ~~~~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 401 LVERGEIRRCLEAVMEEKS 419 (455)
T ss_pred cCcHHHHHHHHHHHHhhhH
Confidence 137899999999997543
No 174
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.12 E-value=0.69 Score=38.86 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=67.8
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccchh--HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHh-
Q 017085 165 EHVRESLGVRNEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ- 241 (377)
Q Consensus 165 ~~~r~~~~~~~~~~~i~~~G~~~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~- 241 (377)
+..+..+.+ +..++-+++|.-++.=.. |........+.+.|.+ ..+.|++.-+.. -.+.++..++.
T Consensus 151 e~~~~~~p~-~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-----~g~~~lisfSRR-----Tp~~~~s~l~~~ 219 (329)
T COG3660 151 EAFKHLLPL-PRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-----QGGSFLISFSRR-----TPDTVKSILKNN 219 (329)
T ss_pred HHHHhhCCC-CCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-----CCceEEEEeecC-----CcHHHHHHHHhc
Confidence 334444433 456777788865443332 3344444434444433 557777765532 23445555554
Q ss_pred cCCCCcEEEecCc---CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC
Q 017085 242 KKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 242 ~~~~~~v~~~g~~---~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~ 299 (377)
+.-..-+.+-+.- +-..++|++||.++.+-. .=+.+.||.+.|+||.+...++
T Consensus 220 l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaD-----SinM~sEAasTgkPv~~~~~~~ 275 (329)
T COG3660 220 LNSSPGIVWNNEDTGYNPYIDMLAAADYIISTAD-----SINMCSEAASTGKPVFILEPPN 275 (329)
T ss_pred cccCceeEeCCCCCCCCchHHHHhhcceEEEecc-----hhhhhHHHhccCCCeEEEecCC
Confidence 3322233443331 457899999999997654 2345679999999999875444
No 175
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.09 E-value=0.11 Score=46.54 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=65.6
Q ss_pred HHHHHHhCCCC-CCeEEEEecc-ccccchh--HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHH
Q 017085 165 EHVRESLGVRN-EDLLFAIINS-VSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM 240 (377)
Q Consensus 165 ~~~r~~~~~~~-~~~~i~~~G~-~~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~ 240 (377)
......++++. +.++++..|. ..+.|.. +...+.+..+.+ .+.++++.|+.. ..+..++...
T Consensus 162 ~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~---------~~~~ivl~G~~~-----e~~~~~~i~~ 227 (334)
T TIGR02195 162 AAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID---------QGYQVVLFGSAK-----DHPAGNEIEA 227 (334)
T ss_pred HHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH---------CCCEEEEEEChh-----hHHHHHHHHH
Confidence 34556667654 4566666665 3355544 456666554432 457888888752 2333333333
Q ss_pred hcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 241 QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 241 ~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
..+ ...+.+.|.. .++..+++.||++|.+-. . .+-=|.|+|+|+|+-
T Consensus 228 ~~~-~~~~~l~g~~sL~el~ali~~a~l~I~~DS-----G--p~HlAaA~~~P~i~l 276 (334)
T TIGR02195 228 LLP-GELRNLAGETSLDEAVDLIALAKAVVTNDS-----G--LMHVAAALNRPLVAL 276 (334)
T ss_pred hCC-cccccCCCCCCHHHHHHHHHhCCEEEeeCC-----H--HHHHHHHcCCCEEEE
Confidence 322 1223466753 789999999999996543 2 344578999999975
No 176
>PLN02207 UDP-glycosyltransferase
Probab=95.69 E-value=0.52 Score=44.15 Aligned_cols=82 Identities=15% Similarity=0.056 Sum_probs=51.3
Q ss_pred CcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccceec-Ccceeeec------
Q 017085 246 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVN-GTTGLLHP------ 314 (377)
Q Consensus 246 ~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~~~-~~~g~~~~------ 314 (377)
++..+.++..+. ++++...+..+-+. +.-++++||+.+|+|+|+-. ......++.+ -+.|.-+.
T Consensus 332 ~~g~i~~W~PQ~-~IL~H~~vg~FvTH----~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~ 406 (468)
T PLN02207 332 GRGMICGWSPQV-EILAHKAVGGFVSH----CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVH 406 (468)
T ss_pred CCeEEEEeCCHH-HHhcccccceeeec----CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccc
Confidence 566667776443 56777666444343 33468999999999999864 3344443333 34555331
Q ss_pred CCC-CChhHHHHHHHHHhh
Q 017085 315 VGK-EGITPLAKNIVKLAT 332 (377)
Q Consensus 315 ~~~-~~~~~la~~i~~l~~ 332 (377)
..+ .+.++++++|.+++.
T Consensus 407 ~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 407 SDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cCCcccHHHHHHHHHHHHh
Confidence 001 127899999999996
No 177
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=95.64 E-value=0.37 Score=45.22 Aligned_cols=145 Identities=13% Similarity=0.088 Sum_probs=89.2
Q ss_pred ccc-cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHH
Q 017085 184 NSV-SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPY 260 (377)
Q Consensus 184 G~~-~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~ 260 (377)
|.- .-++|-+..++++.+. -+++-.+.+... ....++.-|+=+|.. +++.++
T Consensus 284 GK~~~~w~~k~~~l~~l~~~-----------~eih~tV~~~~~--------------~~~~~P~~V~NHG~l~~~ef~~l 338 (559)
T PF15024_consen 284 GKERYMWKGKEKYLDVLHKY-----------MEIHGTVYDEPQ--------------RPPNVPSFVKNHGILSGDEFQQL 338 (559)
T ss_pred ccchhhhcCcHHHHHHHHhh-----------cEEEEEeccCCC--------------CCcccchhhhhcCcCCHHHHHHH
Confidence 443 3367777777777532 456666654431 011223334445543 789999
Q ss_pred HHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC---------------cccceec---------CcceeeecCC
Q 017085 261 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG---------------TTEIVVN---------GTTGLLHPVG 316 (377)
Q Consensus 261 ~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~---------------~~e~~~~---------~~~g~~~~~~ 316 (377)
++.+.++|--... .| |-+.+||+|+|+|.|-..... ..++-.. .-.=+.++..
T Consensus 339 L~~akvfiGlGfP-~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~ 415 (559)
T PF15024_consen 339 LRKAKVFIGLGFP-YE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDIN 415 (559)
T ss_pred HHhhhEeeecCCC-CC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCC
Confidence 9999999954432 33 346899999999999654221 1111110 1122455666
Q ss_pred CCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017085 317 KEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 367 (377)
Q Consensus 317 ~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 367 (377)
| .+++.+||.++++++- + -++--.|+-+.+.+|+..+++.
T Consensus 416 n--~~~v~~Avk~il~~~v--~-------Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 416 N--STEVEAAVKAILATPV--E-------PYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred C--HHHHHHHHHHHHhcCC--C-------CcCCcccCHHHHHHHHHHHHHh
Confidence 6 9999999999988652 1 2333569999999999887764
No 178
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.57 E-value=0.16 Score=45.84 Aligned_cols=101 Identities=9% Similarity=0.006 Sum_probs=61.5
Q ss_pred CCeEEEEeccccccchhH--HHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 176 EDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 176 ~~~~i~~~G~~~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
+.++++..|.-.+.|... ...+.++.+ .+ .+++++++|+..+. ..+..++..+...-...+.+.|.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L----~~-----~~~~vvl~ggp~e~---e~~~~~~i~~~~~~~~~~~l~g~ 250 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDAL----QA-----RGYEVVLTSGPDKD---DLACVNEIAQGCQTPPVTALAGK 250 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHH----HH-----CCCeEEEEcCCChH---HHHHHHHHHHhcCCCccccccCC
Confidence 467777777755666543 455555544 32 46788888764221 12222333332222234556775
Q ss_pred c--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 254 T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 254 ~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
. .++..+++.||++|.+-. .+ +-=|.|+|+|+|+-
T Consensus 251 ~sL~el~ali~~a~l~v~nDS-----Gp--~HlAaA~g~P~v~l 287 (352)
T PRK10422 251 TTFPELGALIDHAQLFIGVDS-----AP--AHIAAAVNTPLICL 287 (352)
T ss_pred CCHHHHHHHHHhCCEEEecCC-----HH--HHHHHHcCCCEEEE
Confidence 4 889999999999996543 23 44477999999975
No 179
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=95.56 E-value=0.025 Score=48.14 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=16.8
Q ss_pred cHhhHHHhcCceEEEEEecCC
Q 017085 2 ELAFLLRGVGTKVNWITIQKP 22 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~ 22 (377)
.|+++|+++||+|.|+++..+
T Consensus 24 ~L~kaL~~~G~~V~Vi~P~y~ 44 (245)
T PF08323_consen 24 SLPKALAKQGHDVRVIMPKYG 44 (245)
T ss_dssp HHHHHHHHTT-EEEEEEE-TH
T ss_pred HHHHHHHhcCCeEEEEEccch
Confidence 589999999999999998753
No 180
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=95.51 E-value=0.21 Score=42.50 Aligned_cols=103 Identities=15% Similarity=0.127 Sum_probs=57.2
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
++..+++..|.-.+.|.... +-+.+|.+.|.+ ..+.++++|+..+. ..+......+... ...+.+.|..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~--e~~~~l~~~l~~-----~~~~vvl~g~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~ 172 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPA--EKWAELIERLKE-----RGYRVVLLGGPEEQ---EKEIADQIAAGLQ-NPVINLAGKT 172 (247)
T ss_dssp TSSEEEEE---SSGGGS--H--HHHHHHHHHHCC-----CT-EEEE--SSHHH---HHHHHHHHHTTHT-TTTEEETTTS
T ss_pred cCCeEEEeecCCCccccCCH--HHHHHHHHHHHh-----hCceEEEEccchHH---HHHHHHHHHHhcc-cceEeecCCC
Confidence 55677777777667776543 444455555544 33788888887310 1222233333222 1257777764
Q ss_pred --CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 255 --LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 255 --~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
.++..+++.||++|.+-. . .+-=|.|+|+|+|+-
T Consensus 173 ~l~e~~ali~~a~~~I~~Dt-----g--~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 173 SLRELAALISRADLVIGNDT-----G--PMHLAAALGTPTVAL 208 (247)
T ss_dssp -HHHHHHHHHTSSEEEEESS-----H--HHHHHHHTT--EEEE
T ss_pred CHHHHHHHHhcCCEEEecCC-----h--HHHHHHHHhCCEEEE
Confidence 788999999999997653 2 344589999999986
No 181
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=95.42 E-value=0.8 Score=39.39 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=29.3
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
.++..+++.||+++.... . ..+=|+++|+|+|+-+.
T Consensus 249 ~~~~~~~~~~~~~Is~Rl------H-~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 249 DELLELISQADLVISMRL------H-GAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHhcCCEEEecCC------H-HHHHHHHcCCCEEEEec
Confidence 789999999999997654 2 46669999999998653
No 182
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.36 E-value=0.4 Score=43.23 Aligned_cols=108 Identities=11% Similarity=0.046 Sum_probs=63.6
Q ss_pred HHHHhCCC-CCCeEEEEeccc-cccchh--HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhc
Q 017085 167 VRESLGVR-NEDLLFAIINSV-SRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 242 (377)
Q Consensus 167 ~r~~~~~~-~~~~~i~~~G~~-~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~ 242 (377)
..+.+++. ++.++++..|.- .+.|.. +.+.+.++.+.+ .++++++.|+.. ..+..++.....
T Consensus 170 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~---------~~~~vvl~Gg~~-----e~~~~~~i~~~~ 235 (348)
T PRK10916 170 TCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID---------EGYQVVLFGSAK-----DHEAGNEILAAL 235 (348)
T ss_pred HHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEeCHH-----hHHHHHHHHHhc
Confidence 44455554 345666666653 344543 445555554422 467888888752 333334433333
Q ss_pred CCC---CcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 243 KIQ---DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 243 ~~~---~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
+-+ ..+.+.|.. .++..+++.||++|.+-. .+ +-=|.|.|+|+|+-
T Consensus 236 ~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDT-----Gp--~HlAaA~g~P~val 286 (348)
T PRK10916 236 NTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDS-----GL--MHVAAALNRPLVAL 286 (348)
T ss_pred ccccccceeeccCCCCHHHHHHHHHhCCEEEecCC-----hH--HHHHHHhCCCEEEE
Confidence 211 124556653 789999999999996543 23 44588999999974
No 183
>PLN02534 UDP-glycosyltransferase
Probab=95.33 E-value=1.6 Score=41.26 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=56.1
Q ss_pred CcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC----Cccccee-cCcceeeec------
Q 017085 246 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVV-NGTTGLLHP------ 314 (377)
Q Consensus 246 ~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~----~~~e~~~-~~~~g~~~~------ 314 (377)
.++++.++..+ .+++...++..+-+ .+..++++||+++|+|+|+-... .....+. .-+.|+-+.
T Consensus 344 ~g~~v~~w~pq-~~iL~h~~v~~fvt----H~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~ 418 (491)
T PLN02534 344 RGLLIKGWAPQ-VLILSHPAIGGFLT----HCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVR 418 (491)
T ss_pred CCeeccCCCCH-HHHhcCCccceEEe----cCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccc
Confidence 46777788754 46888888844434 34467999999999999987532 1212221 112333221
Q ss_pred CC-------CCChhHHHHHHHHHhhC-HHHHHHHHHHHH
Q 017085 315 VG-------KEGITPLAKNIVKLATH-VERRLTMGKRGY 345 (377)
Q Consensus 315 ~~-------~~~~~~la~~i~~l~~~-~~~~~~~~~~~~ 345 (377)
.+ ..+.+++++++.+++.+ .+.-+++++++.
T Consensus 419 ~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~ 457 (491)
T PLN02534 419 WGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQ 457 (491)
T ss_pred ccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 00 01378999999999962 222334444443
No 184
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.24 E-value=1.2 Score=39.70 Aligned_cols=98 Identities=12% Similarity=-0.000 Sum_probs=56.9
Q ss_pred CCCeEEEEeccccccchh--HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 175 NEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
.++++++..|.-.+.|.. +...+.+..+ .+ .++++++.|+++ .+.+...+..+.. .++.+.|
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l----~~-----~~~~ivl~~G~~----~e~~~~~~i~~~~---~~~~l~g 240 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLL----AP-----SGLRIKLPWGAE----HEEQRAKRLAEGF---PYVEVLP 240 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHH----HH-----CCCeEEEeCCCH----HHHHHHHHHHccC---CcceecC
Confidence 345554445543344443 3455555544 22 356777763332 2233333333321 2466777
Q ss_pred Cc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 253 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 253 ~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
.. .++..+++.||++|.+.. . .+-=|.|+|+|+|+-
T Consensus 241 ~~sL~elaali~~a~l~I~nDS-----G--p~HlA~A~g~p~val 278 (322)
T PRK10964 241 KLSLEQVARVLAGAKAVVSVDT-----G--LSHLTAALDRPNITL 278 (322)
T ss_pred CCCHHHHHHHHHhCCEEEecCC-----c--HHHHHHHhCCCEEEE
Confidence 54 789999999999997553 2 344588999999975
No 185
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.24 E-value=0.88 Score=40.44 Aligned_cols=98 Identities=14% Similarity=0.010 Sum_probs=59.8
Q ss_pred CCCeEEEEeccccccchh--HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 175 NEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
+++.+++..|.-.+.|.. +...+.+..+.+ .+++++++|+++ ...+..++..+..+ +..+.|
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~---------~~~~~vl~~g~~----~e~~~~~~i~~~~~---~~~l~g 241 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLA---------RGLQIVLPWGND----AEKQRAERIAEALP---GAVVLP 241 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHhhCC---CCeecC
Confidence 355666777754556655 355555554432 367888875442 23333444444332 235567
Q ss_pred Cc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 253 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 253 ~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
.. .++.++++.||++|.+-. .+ +-=|.|+|+|+|+-
T Consensus 242 ~~sL~el~ali~~a~l~I~~DS-----gp--~HlAaa~g~P~i~l 279 (319)
T TIGR02193 242 KMSLAEVAALLAGADAVVGVDT-----GL--THLAAALDKPTVTL 279 (319)
T ss_pred CCCHHHHHHHHHcCCEEEeCCC-----hH--HHHHHHcCCCEEEE
Confidence 53 789999999999997543 33 34467899999975
No 186
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.95 E-value=0.56 Score=42.22 Aligned_cols=102 Identities=10% Similarity=-0.008 Sum_probs=60.5
Q ss_pred CCCeEEEEeccccccchh--HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 175 NEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
.+.++++..|.-.+.|.. +...+.++.+. + .+++++++|+..+. ..+..++.....+-+..+.+.|
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~----~-----~~~~ivl~g~p~~~---e~~~~~~i~~~~~~~~~~~l~g 247 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALH----A-----RGYEVVLTSGPDKD---ELAMVNEIAQGCQTPRVTSLAG 247 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHH----h-----CCCeEEEecCCCHH---HHHHHHHHHhhCCCCcccccCC
Confidence 345666666664455544 44555554442 2 46788888864211 1222333333333222355677
Q ss_pred Cc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 253 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 253 ~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
.. .++..+++.||++|.+-. . .+-=|.|+|+|+|+-
T Consensus 248 ~~sL~el~ali~~a~l~Vs~DS-----G--p~HlAaA~g~p~v~L 285 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGVDS-----V--PMHMAAALGTPLVAL 285 (344)
T ss_pred CCCHHHHHHHHHhCCEEEecCC-----H--HHHHHHHcCCCEEEE
Confidence 54 789999999999996543 2 344588999999975
No 187
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=94.86 E-value=3.1 Score=38.07 Aligned_cols=194 Identities=10% Similarity=0.086 Sum_probs=102.9
Q ss_pred cccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecccc
Q 017085 108 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 187 (377)
Q Consensus 108 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~ 187 (377)
...+...+.+......+.+ .+++...++.....|-....+...... .........++++.+..+|+|.-.++
T Consensus 147 ~~~dy~~~~~~~~~~if~~----~f~~~~~~i~~~G~Pr~D~~~~~~~~~----~~~~~~~~~~~~~~~k~vIlyaPTfr 218 (388)
T COG1887 147 NHWDYLISPNPESTAIFAE----AFNIDKENILETGYPRNDKLFDEAGKT----EDILLIQLALPLPQDKKVILYAPTFR 218 (388)
T ss_pred eeeeeeeeCChhhHHHHHH----HhcccccceeecCcccchhhhhhccch----hhhHHHhhhcCCcccCceEEecCCcc
Confidence 3445555555544444333 667766655555444433333222111 11122445677788889999988887
Q ss_pred ccc---h---hHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHH
Q 017085 188 RGK---G---QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL 261 (377)
Q Consensus 188 ~~K---g---~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~ 261 (377)
+.. | ....++. .++.+.+.+ .++.+++--... ....+...- ...+-+.....-.++.++|
T Consensus 219 ~~~~~~~~~~~~~~~~~-~~~~~~l~~-----~~~~ii~k~Hp~-----is~~~~~~~---~~~~~~~~vs~~~di~dll 284 (388)
T COG1887 219 DNDVLIGTQFFNLDIDI-EKLKEKLGE-----NEYVIIVKPHPL-----ISDKIDKRY---ALDDFVLDVSDNADINDLL 284 (388)
T ss_pred CCccccchhhhhhhhhH-HHHHHhhcc-----CCeEEEEecChh-----hhhhhhhhh---hccceeEecccchhHHHHH
Confidence 765 2 2222222 222333321 456655544421 111111111 1122233444356899999
Q ss_pred HhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC---------CcccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 262 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG---------GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 262 ~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~---------~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
..+|+++-= ++.+..|+|...+|||..-.- -..+ .....-|-++.. .+++.++|.....
T Consensus 285 ~~sDiLITD-------ySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d-~~~~~Pg~~~~~----~~~li~ai~~~~~ 352 (388)
T COG1887 285 LVSDILITD-------YSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLD-YKFEAPGEVVET----QEELIDAIKPYDE 352 (388)
T ss_pred hhhCEEEee-------chHHHHHHHHhcCcEEEEecChHHHHhhhhhhhh-HHhcCCcccccc----HHHHHHHHHhhhc
Confidence 999999832 456899999999999976211 1111 111223444443 6788888888877
Q ss_pred CHH
Q 017085 333 HVE 335 (377)
Q Consensus 333 ~~~ 335 (377)
+.+
T Consensus 353 ~~~ 355 (388)
T COG1887 353 DGN 355 (388)
T ss_pred ccc
Confidence 544
No 188
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=94.79 E-value=0.83 Score=43.43 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=53.8
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe----CCCCcccceec-CcceeeecCCCCC
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT----AAGGTTEIVVN-GTTGLLHPVGKEG 319 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s----~~~~~~e~~~~-~~~g~~~~~~~~~ 319 (377)
+.+|.+.++..+..-++....+.++-+. .|++ +++|++.+|+|+|+. |..-....+.+ +..+.+...+- .
T Consensus 334 ~~nV~~~~W~PQ~~lll~H~~v~~FvTH---gG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~-~ 408 (496)
T KOG1192|consen 334 RGNVVLSKWAPQNDLLLDHPAVGGFVTH---GGWN-STLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDL-V 408 (496)
T ss_pred cCceEEecCCCcHHHhcCCCcCcEEEEC---Cccc-HHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhc-C
Confidence 3478888887555433333333333342 3444 569999999999954 33344444444 33444433322 2
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHH
Q 017085 320 ITPLAKNIVKLATHVERRLTMGK 342 (377)
Q Consensus 320 ~~~la~~i~~l~~~~~~~~~~~~ 342 (377)
..++.+++..++++++..+...+
T Consensus 409 ~~~~~~~~~~il~~~~y~~~~~~ 431 (496)
T KOG1192|consen 409 SEELLEAIKEILENEEYKEAAKR 431 (496)
T ss_pred cHHHHHHHHHHHcChHHHHHHHH
Confidence 34488899999888775444433
No 189
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.66 E-value=0.14 Score=36.40 Aligned_cols=80 Identities=9% Similarity=0.197 Sum_probs=53.0
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC----c-C--CHHHHHHhcCEEEecCCCC-CCccchHHHHHHHcC
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK----T-L--TVAPYLAAIDVLVQNSQAW-GECFGRITIEAMAFQ 289 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~----~-~--~~~~~~~~adv~l~ps~~~-~e~~~~~~~Ea~a~g 289 (377)
++|+|+.. .....+++.++++|.. ..++|. . . .+...+..+|++++++..- ...+-.+--+|-..|
T Consensus 2 vliVGG~~----~~~~~~~~~~~~~G~~--~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ 75 (97)
T PF10087_consen 2 VLIVGGRE----DRERRYKRILEKYGGK--LIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYG 75 (97)
T ss_pred EEEEcCCc----ccHHHHHHHHHHcCCE--EEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcC
Confidence 57788832 3678888899999875 333332 2 3 3788899999999876520 112223333777889
Q ss_pred CcEEEeCCCCcccc
Q 017085 290 LPVLGTAAGGTTEI 303 (377)
Q Consensus 290 ~PvI~s~~~~~~e~ 303 (377)
+|++.++..+...+
T Consensus 76 ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 76 IPIIYSRSRGVSSL 89 (97)
T ss_pred CcEEEECCCCHHHH
Confidence 99999987665544
No 190
>PLN03015 UDP-glucosyl transferase
Probab=94.49 E-value=1.6 Score=40.86 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=49.4
Q ss_pred EEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC----CCcccce-ecCcceeeec----CCCC
Q 017085 248 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA----GGTTEIV-VNGTTGLLHP----VGKE 318 (377)
Q Consensus 248 v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~----~~~~e~~-~~~~~g~~~~----~~~~ 318 (377)
+++.++..+. ++++...+..+-+. +.-++++||+.+|+|+|+-.. ......+ ..-+.|.-+. .+..
T Consensus 337 l~v~~W~PQ~-~vL~h~~vg~fvtH----~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQV-EILSHRSIGGFLSH----CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCHH-HHhccCccCeEEec----CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 5566776443 56667666444443 234689999999999998643 2233333 2234555542 1112
Q ss_pred ChhHHHHHHHHHhh
Q 017085 319 GITPLAKNIVKLAT 332 (377)
Q Consensus 319 ~~~~la~~i~~l~~ 332 (377)
..+++++++++++.
T Consensus 412 ~~e~i~~~v~~lm~ 425 (470)
T PLN03015 412 GREEVASLVRKIVA 425 (470)
T ss_pred CHHHHHHHHHHHHc
Confidence 37899999999995
No 191
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=93.89 E-value=1.6 Score=33.32 Aligned_cols=99 Identities=11% Similarity=0.145 Sum_probs=59.8
Q ss_pred eEEEEeccccccchhHHHHHHHH--HHHHHHhhhcccCCCeEEEE-EecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 178 LLFAIINSVSRGKGQDLFLHSFY--ESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 178 ~~i~~~G~~~~~Kg~~~ll~a~~--~l~~~l~~~~~~~~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
-+|+.+|.-. .|.|+.+.. ..++.|.+.| =.+++| .|.|...-++..+ ...+..|+ .|....+.
T Consensus 5 ~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G----~~kLiiQ~Grg~~~~~d~~~---~~~k~~gl--~id~y~f~ 71 (170)
T KOG3349|consen 5 TVFVTVGTTS----FDDLISCVLSEEFLQELQKRG----FTKLIIQIGRGQPFFGDPID---LIRKNGGL--TIDGYDFS 71 (170)
T ss_pred EEEEEecccc----HHHHHHHHcCHHHHHHHHHcC----ccEEEEEecCCccCCCCHHH---hhcccCCe--EEEEEecC
Confidence 4677788543 788887653 4445566542 235554 5776322111112 11122222 24444455
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
..+.++++.||+++. .+...+++|.+..|+|.|+-
T Consensus 72 psl~e~I~~AdlVIs------HAGaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 72 PSLTEDIRSADLVIS------HAGAGSCLETLRLGKPLIVV 106 (170)
T ss_pred ccHHHHHhhccEEEe------cCCcchHHHHHHcCCCEEEE
Confidence 889999999999983 33455899999999998865
No 192
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=91.42 E-value=0.2 Score=44.08 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=46.2
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCC-cEEEeC--CCCcccceecCcceeeecCCCCChhHHHHHH
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLGTA--AGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 327 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~-PvI~s~--~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i 327 (377)
.+..+.|+.|..++.|.- ...+..-++|||++|+ |||.++ .-...+++.-....+.++..+ ..++-+.|
T Consensus 228 ~~~~~~l~~S~FCL~p~G--~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~--~~~l~~iL 299 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRG--DGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEAD--LPELPEIL 299 (302)
T ss_pred hHHHHhcccCeEEEECCC--CCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHH--HHHHHHHH
Confidence 357788999999999875 4457889999999995 677665 234566664444555565433 44443333
No 193
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=90.49 E-value=2.4 Score=34.32 Aligned_cols=127 Identities=14% Similarity=0.115 Sum_probs=56.7
Q ss_pred cHhhHHHhc--CceEEEEEecCCCcchhHhhhhhhhhc-ccCceEEEcc---chhHHHhhhcccEEEEcCch--hhhHHH
Q 017085 2 ELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMW-DRGVQVISAK---GQETINTALKADLIVLNTAV--AGKWLD 73 (377)
Q Consensus 2 ~la~~L~~~--G~eV~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~Div~~~~~~--~~~~~~ 73 (377)
.|+++|+++ |+.|.+-+....+ .... ...+. .....+.+.. ....+++.-+||++++.... +. ++.
T Consensus 39 ~Li~~l~~~~p~~~illT~~T~tg--~~~~---~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPn-ll~ 112 (186)
T PF04413_consen 39 PLIKRLRKQRPDLRILLTTTTPTG--REMA---RKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPN-LLR 112 (186)
T ss_dssp HHHHHHTT---TS-EEEEES-CCH--HHHH---HGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEEES----HH-HHH
T ss_pred HHHHHHHHhCCCCeEEEEecCCch--HHHH---HHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEEEccccCHH-HHH
Confidence 467888876 6666555543321 1111 11111 1223334433 34667778899999887532 32 222
Q ss_pred HHhhcCCCccccceeEEeeeec------ccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEc
Q 017085 74 AVLKEDVPRVLPNVLWWIHEMR------GHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHL 144 (377)
Q Consensus 74 ~~~~~~~~~~~~~~v~~~h~~~------~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~n 144 (377)
.+...++ |++..---+. ..++.......+..+|.+.+.++..++.+. .+|.+++++.+..|
T Consensus 113 ~a~~~~i-----p~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~-----~lG~~~~~v~v~Gn 179 (186)
T PF04413_consen 113 EAKRRGI-----PVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFR-----KLGAPPERVHVTGN 179 (186)
T ss_dssp H-----S------EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHHHH-----TTT-S--SEEE---
T ss_pred HHhhcCC-----CEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCcceEEEeCc
Confidence 2222233 3333211111 122334556667899999999999998887 78999899999887
No 194
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=90.16 E-value=4.3 Score=38.16 Aligned_cols=95 Identities=13% Similarity=0.068 Sum_probs=62.6
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcC-CcEEEeCC--CCcccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ-LPVLGTAA--GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g-~PvI~s~~--~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
....+.|+.|..++.|.- .+...-.++||+..| +|||.++. ..+.+.+.-..-++.++..+ ...+ |.+.|
T Consensus 335 ~~y~~~m~~S~FCL~p~G--d~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~--v~~~---~~~iL 407 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPG--DTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKD--VPEL---IKNIL 407 (464)
T ss_pred chHHHHhhcCeEEECCCC--CCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHH--hhhH---HHHHH
Confidence 567899999999999987 677777999999999 58888874 44555554445566666333 4444 33333
Q ss_pred h--CHHHHHHHHHHHHHHHHHhcCHHH
Q 017085 332 T--HVERRLTMGKRGYERVKEIFQEHH 356 (377)
Q Consensus 332 ~--~~~~~~~~~~~~~~~~~~~f~~~~ 356 (377)
. ..+....|+++....+.++|-+..
T Consensus 408 ~~i~~~~~~~m~~~v~~~v~r~~~~~~ 434 (464)
T KOG1021|consen 408 LSIPEEEVLRMRENVIRLVPRHFLKKP 434 (464)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhEEeCC
Confidence 2 344456666666555556555543
No 195
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=89.92 E-value=0.39 Score=36.62 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=25.7
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK 47 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (377)
-|+++|+++||||++.+... +.......|+.+.+..
T Consensus 17 ala~~L~~rGh~V~~~~~~~----------~~~~v~~~Gl~~~~~~ 52 (139)
T PF03033_consen 17 ALARALRRRGHEVRLATPPD----------FRERVEAAGLEFVPIP 52 (139)
T ss_dssp HHHHHHHHTT-EEEEEETGG----------GHHHHHHTT-EEEESS
T ss_pred HHHHHHhccCCeEEEeeccc----------ceecccccCceEEEec
Confidence 47899999999999888664 4555566788776644
No 196
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=88.42 E-value=6.2 Score=32.68 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=53.9
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhc-CCCCcEEEecCcCCHHHHHHhcCEEEecCCC-------CCC-ccchHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA-------WGE-CFGRITIE 284 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~-------~~e-~~~~~~~E 284 (377)
.+.++.++........++...+.+...++ |....+...-..++..+.+..||++++|.-+ +.+ ++--.+-+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHH
Confidence 46788888876655445677778888888 7642222221225667899999999988521 011 22233445
Q ss_pred HHHcCCcEEEeCCC
Q 017085 285 AMAFQLPVLGTAAG 298 (377)
Q Consensus 285 a~a~g~PvI~s~~~ 298 (377)
+...|+|++.+..|
T Consensus 110 ~~~~g~~i~G~SAG 123 (212)
T cd03146 110 ALERGVVYIGWSAG 123 (212)
T ss_pred HHHCCCEEEEECHh
Confidence 66789999987654
No 197
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=87.26 E-value=5.3 Score=29.68 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=24.2
Q ss_pred HHHHHhcCEEEecCCCCCCcc--chHHH---HHHHcCCcEEEeCCCC
Q 017085 258 APYLAAIDVLVQNSQAWGECF--GRITI---EAMAFQLPVLGTAAGG 299 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~--~~~~~---Ea~a~g~PvI~s~~~~ 299 (377)
..++..||+++.-. .|-+ -+..+ =|.|+|+|.|+-....
T Consensus 70 ~~li~~aDvvVvrF---GekYKQWNaAfDAg~aaAlgKplI~lh~~~ 113 (144)
T TIGR03646 70 RKLIEKADVVIALF---GEKYKQWNAAFDAGYAAALGKPLIILRPEE 113 (144)
T ss_pred HHHHhhCCEEEEEe---chHHHHHHHHhhHHHHHHcCCCeEEecchh
Confidence 45788999988532 1211 12333 4678999999876443
No 198
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=86.50 E-value=25 Score=31.93 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=55.8
Q ss_pred HHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC-cccceec-Ccceee
Q 017085 237 NYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG-TTEIVVN-GTTGLL 312 (377)
Q Consensus 237 ~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~-~~e~~~~-~~~g~~ 312 (377)
.......-..++.+.... +++...++.||++|-.=. . +++=||++|+|+|+-.... ...+.++ +-.++.
T Consensus 257 ~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~------H-saI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~ 329 (385)
T COG2327 257 AIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRL------H-SAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFA 329 (385)
T ss_pred HHHhhcCCccceEeecchHHHHHHHHhccCceEEeehh------H-HHHHHHhcCCCeEEEeecHHHHHHHHHcCCCccc
Confidence 333333323567666643 456778999999874322 2 5677999999999875332 2222222 334455
Q ss_pred ecCCCCChhHHHHHHHHHhh-CHHHH
Q 017085 313 HPVGKEGITPLAKNIVKLAT-HVERR 337 (377)
Q Consensus 313 ~~~~~~~~~~la~~i~~l~~-~~~~~ 337 (377)
.+..+.+.+.+..+..+.+. .++.+
T Consensus 330 ~~i~~~~~~~l~~~~~e~~~~~~~~~ 355 (385)
T COG2327 330 IDIDPLDAEILSAVVLERLTKLDELR 355 (385)
T ss_pred ccCCCCchHHHHHHHHHHHhccHHHH
Confidence 55544447788877776665 44433
No 199
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=86.26 E-value=2.3 Score=31.76 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=31.5
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcc
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 301 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~ 301 (377)
+++.+++..+|+++--|. .+..--.+-.++..|+|+|+..+|...
T Consensus 59 ~~l~~~~~~~DVvIDfT~--p~~~~~~~~~~~~~g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN--PDAVYDNLEYALKHGVPLVIGTTGFSD 103 (124)
T ss_dssp S-HHHHTTH-SEEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHH
T ss_pred hhHHHhcccCCEEEEcCC--hHHhHHHHHHHHhCCCCEEEECCCCCH
Confidence 678999999999998776 566556666888999999987766543
No 200
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=86.06 E-value=14 Score=30.45 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=65.2
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCC---ccchHHHHHHH--
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGE---CFGRITIEAMA-- 287 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e---~~~~~~~Ea~a-- 287 (377)
+++++++.+.. .....+....+..+.-..+......++....+. ..|++++-..- .+ ..|..+++.+.
T Consensus 3 ~~~Ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l-~~~~~~~g~~~~~~l~~~ 77 (216)
T PRK10840 3 NMNVIIADDHP----IVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSM-PGDKYGDGITLIKYIKRH 77 (216)
T ss_pred ceEEEEECCcH----HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcC-CCCCCCCHHHHHHHHHHH
Confidence 36777777753 345566666655432111222222234444443 36888875431 22 25667776664
Q ss_pred -cCCcEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 288 -FQLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 288 -~g~PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
-++|+|+- .... ....+..|..|++..+.+ .+++.++|..++..
T Consensus 78 ~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~--~~~l~~ai~~v~~g 126 (216)
T PRK10840 78 FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGA--PTDLPKALAALQKG 126 (216)
T ss_pred CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCC--HHHHHHHHHHHHCC
Confidence 34566654 3322 223456688899999887 99999999988763
No 201
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=85.99 E-value=15 Score=31.00 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=51.7
Q ss_pred EEEEEecCC--CcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCC--------CCCccchHHHHHH
Q 017085 217 HAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA--------WGECFGRITIEAM 286 (377)
Q Consensus 217 ~l~i~G~~~--~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~--------~~e~~~~~~~Ea~ 286 (377)
++.++.... .+...+.+..++..+++|.. +..+-..++..+.+..||++.++.-. ...++--.+-|+.
T Consensus 33 ~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~--v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~ 110 (233)
T PRK05282 33 KAVFIPYAGVTQSWDDYTAKVAEALAPLGIE--VTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAV 110 (233)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHHHCCCE--EEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHH
Confidence 455554432 22335677788888888875 55554446677889999988776421 0112223355888
Q ss_pred HcCCcEEEeCCCC
Q 017085 287 AFQLPVLGTAAGG 299 (377)
Q Consensus 287 a~g~PvI~s~~~~ 299 (377)
..|+|++.+..|.
T Consensus 111 ~~G~~~~G~SAGA 123 (233)
T PRK05282 111 KNGTPYIGWSAGA 123 (233)
T ss_pred HCCCEEEEECHHH
Confidence 9999999887664
No 202
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=85.97 E-value=28 Score=32.02 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=53.7
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHH-HHHHcCCcEEE
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI-EAMAFQLPVLG 294 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~-Ea~a~g~PvI~ 294 (377)
-+++|+... .++-++++++++. ... ..+++..++..+|+++..+.+...-.+...+ +++.-....+.
T Consensus 203 ~~i~IaNRT-------~erA~~La~~~~~----~~~-~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~li 270 (414)
T COG0373 203 KKITIANRT-------LERAEELAKKLGA----EAV-ALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLI 270 (414)
T ss_pred CEEEEEcCC-------HHHHHHHHHHhCC----eee-cHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEE
Confidence 455555554 4556666666651 111 1278999999999999776422233344444 34444444677
Q ss_pred eCCCCcccceec---CcceeeecCCCCChhHHHHHHHH
Q 017085 295 TAAGGTTEIVVN---GTTGLLHPVGKEGITPLAKNIVK 329 (377)
Q Consensus 295 s~~~~~~e~~~~---~~~g~~~~~~~~~~~~la~~i~~ 329 (377)
.|.+-.+++-.+ -.+-++++ .++|.....+
T Consensus 271 vDiavPRdie~~v~~l~~v~l~~-----iDDL~~iv~~ 303 (414)
T COG0373 271 VDIAVPRDVEPEVGELPNVFLYT-----IDDLEEIVEE 303 (414)
T ss_pred EEecCCCCCCccccCcCCeEEEe-----hhhHHHHHHH
Confidence 787666655432 11235555 5555555544
No 203
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=85.14 E-value=8.3 Score=30.66 Aligned_cols=72 Identities=13% Similarity=-0.013 Sum_probs=39.9
Q ss_pred HhhhcccEEEEcCchhhhHHHHHhhcC--CCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHh
Q 017085 53 NTALKADLIVLNTAVAGKWLDAVLKED--VPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYW 124 (377)
Q Consensus 53 ~~~~~~Div~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 124 (377)
+.+.+||+|+++++..+..+..+.+.. +-....+++|----.+.......-+..++.+|.+++..+..++.+
T Consensus 88 l~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~aRv~~lSlTGklly~~aD~f~VQW~~l~~~y 161 (170)
T PF08660_consen 88 LRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFARVKTLSLTGKLLYPFADRFIVQWEELAEKY 161 (170)
T ss_pred HHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeeeecCCCchHHHHHHHhCCEEEEcCHHHHhHC
Confidence 356889999999977554443332211 111134666543332222222223334457899999998887754
No 204
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=83.74 E-value=8.5 Score=28.57 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=26.0
Q ss_pred HHHHHHhcCEEEecCCCCCCcc--chHHH---HHHHcCCcEEEeCCCCcc
Q 017085 257 VAPYLAAIDVLVQNSQAWGECF--GRITI---EAMAFQLPVLGTAAGGTT 301 (377)
Q Consensus 257 ~~~~~~~adv~l~ps~~~~e~~--~~~~~---Ea~a~g~PvI~s~~~~~~ 301 (377)
...++..||++|.-. .|-+ -+..+ =|.|+|+|.|+-......
T Consensus 66 T~~li~~aDvVVvrF---GekYKQWNaAfDAg~a~AlgKplI~lh~~~~~ 112 (141)
T PF11071_consen 66 TRTLIEKADVVVVRF---GEKYKQWNAAFDAGYAAALGKPLITLHPEELH 112 (141)
T ss_pred HHHHHhhCCEEEEEe---chHHHHHHHHhhHHHHHHcCCCeEEecchhcc
Confidence 346789999988532 1211 12333 467999999987654433
No 205
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=82.79 E-value=28 Score=32.22 Aligned_cols=45 Identities=7% Similarity=-0.034 Sum_probs=29.8
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccc
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 303 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~ 303 (377)
+++.+.+..+|+++..+. .+-++.- ..+.-+.|.+.-|.+-..++
T Consensus 234 ~~l~~~l~~aDiVI~aT~---a~~~vi~-~~~~~~~~~~~iDLavPRdi 278 (414)
T PRK13940 234 SELPQLIKKADIIIAAVN---VLEYIVT-CKYVGDKPRVFIDISIPQAL 278 (414)
T ss_pred HHHHHHhccCCEEEECcC---CCCeeEC-HHHhCCCCeEEEEeCCCCCC
Confidence 567888999999998775 2222222 33446789998887655554
No 206
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=82.28 E-value=18 Score=31.04 Aligned_cols=90 Identities=13% Similarity=0.026 Sum_probs=58.2
Q ss_pred cchHHHHHHHcCCcEEEeCCC---CcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCH
Q 017085 278 FGRITIEAMAFQLPVLGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 354 (377)
Q Consensus 278 ~~~~~~Ea~a~g~PvI~s~~~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~ 354 (377)
++..+-=-|+|+-.|+..... -..+.+.....=+-+..+. +-++|.++|..+.++++..+++++++++++.+..+.
T Consensus 157 ~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~-sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~~L~~ 235 (256)
T smart00672 157 WSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDL-SCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQNLSM 235 (256)
T ss_pred chhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCC-chhhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCH
Confidence 444444556777666665421 1112222222222222221 123499999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 017085 355 HHMAERIAVVLKEV 368 (377)
Q Consensus 355 ~~~~~~~~~~~~~~ 368 (377)
+.+..-+..++.+.
T Consensus 236 ~~~~~Y~~~ll~ey 249 (256)
T smart00672 236 EDVYDYMFHLLQEY 249 (256)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988777776553
No 207
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=82.17 E-value=15 Score=30.40 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=54.4
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec---CcCCHHHHHHhcCEEEecCCC-------CCCc-cchHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN---KTLTVAPYLAAIDVLVQNSQA-------WGEC-FGRIT 282 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g---~~~~~~~~~~~adv~l~ps~~-------~~e~-~~~~~ 282 (377)
.+.++.++.........+.+.+.+..+++|........- ..+++.+.+..||+++++.-+ +.+. .--.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 356777776654333346677888888888764333322 226788899999998876432 1222 22346
Q ss_pred HHHHHcCCcEEEeCCC
Q 017085 283 IEAMAFQLPVLGTAAG 298 (377)
Q Consensus 283 ~Ea~a~g~PvI~s~~~ 298 (377)
.+....|+|++.+..|
T Consensus 108 ~~~~~~G~v~~G~SAG 123 (210)
T cd03129 108 LKRVARGVVIGGTSAG 123 (210)
T ss_pred HHHHHcCCeEEEcCHH
Confidence 7888889999987655
No 208
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=80.74 E-value=2.4 Score=29.11 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=30.9
Q ss_pred chhHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeec
Q 017085 48 GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR 95 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~ 95 (377)
.++.+.-.++.||||.|+..+.....+.+.... .+.+.|++-|...
T Consensus 41 l~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~--mGlktVfTDHSLf 86 (90)
T PF08288_consen 41 LLRNILIRERIDIVHGHQAFSTLCHEAILHART--MGLKTVFTDHSLF 86 (90)
T ss_pred HHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHh--CCCcEEeeccccc
Confidence 456677789999999998776554444443222 2348899988653
No 209
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=80.05 E-value=25 Score=28.07 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=44.8
Q ss_pred cCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCc----ccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 264 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 264 adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~----~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.|++++-... .+.-|..+++.+....|+|+...... ...+..|..|++..+.+ .+++.++|..++.
T Consensus 48 ~dlvi~d~~~-~~~~g~~~~~~l~~~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~--~~~l~~~i~~~~~ 117 (196)
T PRK10360 48 VQVCICDISM-PDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCS--PDELIAAVHTVAT 117 (196)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHccCCCEEEEECCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHc
Confidence 5777765431 34456677777777788876532222 23344577889999887 9999999998775
No 210
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=79.60 E-value=46 Score=29.84 Aligned_cols=303 Identities=14% Similarity=0.113 Sum_probs=161.7
Q ss_pred HhhHHHhcC--ceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCch-hhhHHHHHhhcC
Q 017085 3 LAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAV-AGKWLDAVLKED 79 (377)
Q Consensus 3 la~~L~~~G--~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~-~~~~~~~~~~~~ 79 (377)
|++.|++.. ++|+++..+...... ....+...++++...... ..+.||++=-+.. ..-|+..+...
T Consensus 27 L~~lL~qs~~v~~V~Lvn~g~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~lDVlIEmg~ql~~~~~~~~~~~- 95 (364)
T PF10933_consen 27 LAMLLQQSPRVESVVLVNGGDGNPIP-----AALMLDLLDVPLVDFDDA-----IDELDVLIEMGAQLDPEWLDYMRAR- 95 (364)
T ss_pred HHHHHhhCCCcceEEEEECCCCCcCC-----cccccccCCCceecHHHh-----cccCCEEEEccCccCHHHHHHHHHc-
Confidence 677777755 788888854331110 112222344544443222 2478999876643 44455544433
Q ss_pred CCccccceeEEeeeec------ccccchhhhccc--cccceeeeeccch---hhHhhhhhhhhhhccCCCeEEEEcCChh
Q 017085 80 VPRVLPNVLWWIHEMR------GHYFKLDYVKHL--PLVAGAMIDSHVT---AEYWKNRTRERLRIKMPDTYVVHLGNSK 148 (377)
Q Consensus 80 ~~~~~~~~v~~~h~~~------~~~~~~~~~~~~--~~~~~~~~~s~~~---~~~~~~~~~~~~~~~~~~~~vi~ngi~~ 148 (377)
+.+++....+.. ...|.+.....+ ...|.+++.-+.. ..++.. +...++.++|.-=++
T Consensus 96 ----G~KvV~y~~GndYv~~~E~~lF~k~~~~~f~~~~yD~VW~lPq~~~~~~~yl~~-------l~r~Pv~~vP~iWsP 164 (364)
T PF10933_consen 96 ----GGKVVSYRCGNDYVMDIESMLFNKPSGHLFNGAPYDEVWTLPQFENTCAPYLET-------LHRCPVRVVPHIWSP 164 (364)
T ss_pred ----CCeEEEEeCCchHHHHhhHHhcCCCCCccCCCCCCceeEeccchhhhchHHHHH-------HhcCCceeeCccCCc
Confidence 346777666542 122333323333 4667777654422 344443 122557888876666
Q ss_pred hhHHHhhhhhhhhhhHHHHHHHhCCCC---CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCC-CeEEEEEecC
Q 017085 149 ELMEVAEDNVAKRVLREHVRESLGVRN---EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP-SVHAVIIGSD 224 (377)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~-~~~l~i~G~~ 224 (377)
.++.......+ +-..+||-.+ ...+-+|=-+++--|..-.=+=+..++.+ +.| -+..+.+-+.
T Consensus 165 ~F~~~~~~~l~------~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~~PmLi~E~aYR-------~~P~~v~~~~V~Nt 231 (364)
T PF10933_consen 165 RFLDQRIAQLP------EHGLRFGYQPGRPGKRVAVFEPNISVVKTCFIPMLICEEAYR-------ADPDAVEHVYVTNT 231 (364)
T ss_pred hhHHHHHHhhh------hcCCccccccCCCCceEEEecCCceEEeecCccHHHHHHHHH-------hChhhcceEEEecc
Confidence 65543321100 0011233322 22222233333334543322222222221 123 3555555553
Q ss_pred CCcccHHHHHHHHHHHhcCC--CCcEEEecCcCCHHHHHH-hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcc
Q 017085 225 MNAQTKFESELRNYVMQKKI--QDRVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 301 (377)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~--~~~v~~~g~~~~~~~~~~-~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~ 301 (377)
... .....+..++..+.+ .....|.|.. ++..+|+ ..|++| |..|.-+....-.|++.-|=|.|-..
T Consensus 232 ~~~--ke~~~F~~f~~~ldlvr~gkasfegR~-~~p~fla~~tD~Vv--SHqWeN~lNYlY~daLyggYPLVHNS----- 301 (364)
T PF10933_consen 232 YHL--KEHPTFVNFANSLDLVRDGKASFEGRF-DFPDFLAQHTDAVV--SHQWENPLNYLYYDALYGGYPLVHNS----- 301 (364)
T ss_pred hhh--hcCHHHHHHHHhhHHhhcCeeEEeeec-ChHHHHHhCCCEEE--eccccchhhHHHHHHHhcCCCcccCc-----
Confidence 221 123455566666554 3567788865 6666664 478887 55556667777889999999998753
Q ss_pred cceecCcceeeecCCCCChhHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcCHH
Q 017085 302 EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQEH 355 (377)
Q Consensus 302 e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~f~~~ 355 (377)
.++. +.|+..+..| ..+=+++|.+++. .....+...+++++.+ ..++..
T Consensus 302 ~~l~--d~GYYY~~fD--~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l-~~~~p~ 351 (364)
T PF10933_consen 302 PLLK--DVGYYYPDFD--AFEGARQLLRAIREHDADLDAYRARARRLL-DRLSPE 351 (364)
T ss_pred chhc--ccCcCCCCcc--HHHHHHHHHHHHHHccccHHHHHHHHHHHH-HhhCCC
Confidence 2442 3899998877 8888888888876 3344667777777755 335543
No 211
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=79.59 E-value=5 Score=33.36 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=36.4
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
.....+++|+...-..+...++.+.+++..+| .+.|.|..+ .+-..+|.+++||.
T Consensus 26 ~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lP-vilfp~~~~---~i~~~aDa~l~~sv 80 (223)
T TIGR01768 26 SGTDAILIGGSQGVTYEKTDTLIEALRRYGLP-IILFPSNPT---NVSRDADALFFPSV 80 (223)
T ss_pred cCCCEEEEcCCCcccHHHHHHHHHHHhccCCC-EEEeCCCcc---ccCcCCCEEEEEEe
Confidence 55677888886533333455666777777765 566776543 34466999999885
No 212
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=79.47 E-value=5.3 Score=31.71 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=35.7
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHH-hhhcccEEE
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-TALKADLIV 62 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Div~ 62 (377)
+|+.|.+.|++|+++..................++..|+.++......... ....+|+|+
T Consensus 44 ~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dlII 104 (169)
T PF03853_consen 44 AARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADLII 104 (169)
T ss_dssp HHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESEEE
T ss_pred HHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccEEE
Confidence 689999999999997755443333333334455566777776644333222 223677776
No 213
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.01 E-value=51 Score=30.00 Aligned_cols=167 Identities=11% Similarity=0.159 Sum_probs=97.8
Q ss_pred EEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCC--CcccHHHHHHHHHHHhcCCCCcEEEecCc---
Q 017085 180 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKT--- 254 (377)
Q Consensus 180 i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~--~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--- 254 (377)
+-|.|+....+=.....+.+.+.++ .++.++|+-... ..+....+++.+..+..+ |++|+|.=..
T Consensus 157 iP~ygsyte~dpv~ia~egv~~fKk---------e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~-Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 157 VPFYGSYTEADPVKIASEGVDRFKK---------ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK-PDEIIFVMDASIG 226 (483)
T ss_pred CeeEecccccchHHHHHHHHHHHHh---------cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcC-CCeEEEEEecccc
Confidence 3455777777777778888776654 678888885422 223346677777766666 6677776431
Q ss_pred ----CCHHHHHHhcCE--EEecCCC--CCCccchHHHHHHHcCCcEEEeCCCC-cccceecCc---ceeeecCCCCChhH
Q 017085 255 ----LTVAPYLAAIDV--LVQNSQA--WGECFGRITIEAMAFQLPVLGTAAGG-TTEIVVNGT---TGLLHPVGKEGITP 322 (377)
Q Consensus 255 ----~~~~~~~~~adv--~l~ps~~--~~e~~~~~~~Ea~a~g~PvI~s~~~~-~~e~~~~~~---~g~~~~~~~~~~~~ 322 (377)
++...+=...|+ ++++-.+ ...|..++.. .+.++||+--..|. +.++-.-.. .+-+.-.+| .+.
T Consensus 227 Qaae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaV--aaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGD--i~g 302 (483)
T KOG0780|consen 227 QAAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAV--AATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGD--IEG 302 (483)
T ss_pred HhHHHHHHHHHHhhccceEEEEecccCCCCCceeeeh--hhhCCCEEEEecCccccccCCCChHHHHHHHhcccc--HHH
Confidence 233444455665 3333221 0334445555 46788998776553 222211111 122445567 999
Q ss_pred HHHHHHHHh-hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 323 LAKNIVKLA-THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 323 la~~i~~l~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
|.+.+.++. +|.+ ++.++- -+-+|+...+.+++..+..
T Consensus 303 lvek~~ev~~~d~~---el~~kl---~~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 303 LVEKVQEVGKDDAK---ELVEKL---KQGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred HHHHHHHHhhhhHH---HHHHHH---HhCCccHHHHHHHHHHHHh
Confidence 999998887 2332 232222 2357999999999888754
No 214
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=78.99 E-value=37 Score=28.37 Aligned_cols=125 Identities=5% Similarity=0.032 Sum_probs=64.7
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
.+.++.++... ..+++..++.. .++.+....-+ ...+..+++++..+.. .+--....-+|-+.|.+|.
T Consensus 47 ~gA~VtVVap~------i~~el~~l~~~----~~i~~~~r~~~-~~dl~g~~LViaATdD-~~vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 47 KGCYVYILSKK------FSKEFLDLKKY----GNLKLIKGNYD-KEFIKDKHLIVIATDD-EKLNNKIRKHCDRLYKLYI 114 (223)
T ss_pred CCCEEEEEcCC------CCHHHHHHHhC----CCEEEEeCCCC-hHHhCCCcEEEECCCC-HHHHHHHHHHHHHcCCeEE
Confidence 45777777764 23445554432 34666643211 2345678877766651 2333334446667799999
Q ss_pred EeCCCCcccc-----eecCcceeeecCCCCC---hhHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 017085 294 GTAAGGTTEI-----VVNGTTGLLHPVGKEG---ITPLAKNIVKLATHVERRLTMGKRGYERVKE 350 (377)
Q Consensus 294 ~s~~~~~~e~-----~~~~~~g~~~~~~~~~---~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 350 (377)
+.+.+...++ +..+.--+-+..+-.+ ...+.+.|+.++.+-+.+.+.....|+.+.+
T Consensus 115 ~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 115 DCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKKYDDFIEYVTKIRNKAKK 179 (223)
T ss_pred EcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8876544444 4333322223221111 2455566666665444445555555665544
No 215
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=78.64 E-value=37 Score=30.80 Aligned_cols=107 Identities=15% Similarity=0.081 Sum_probs=67.9
Q ss_pred HHHHHHHhCCC---CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHH
Q 017085 164 REHVRESLGVR---NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM 240 (377)
Q Consensus 164 ~~~~r~~~~~~---~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~ 240 (377)
+..+.+.+|++ ++.+++..++- +.--+..++++++.. ...+.+++.++. ....+.....
T Consensus 168 ~~~~~~~lg~~~~~~~~~~vslF~Y--e~~~l~~ll~~~~~~----------~~pv~llvp~g~------~~~~~~~~~~ 229 (374)
T PF10093_consen 168 RAAFLRRLGLPEPEPGALRVSLFCY--ENAALASLLDAWAAS----------PKPVHLLVPEGR------ALNSLAAWLG 229 (374)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEEeC--CchHHHHHHHHHhcC----------CCCeEEEecCCc------cHHHHHHHhc
Confidence 67788889985 45565555552 223377777777632 245676666653 2344433332
Q ss_pred ----hcC---C--CCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 241 ----QKK---I--QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 241 ----~~~---~--~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
..| - .-.+++++++ ++.-.++..||+-++-.. - +.+-|.-+|+|.|=-
T Consensus 230 ~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVRGE----D---SfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 230 DALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVRGE----D---SFVRAQWAGKPFVWH 288 (374)
T ss_pred cccccCccccccCCeEEEECCCCCHHHHHHHHHhCccceEecc----h---HHHHHHHhCCCceEe
Confidence 001 0 1246777775 789999999999876543 2 688999999999954
No 216
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=78.58 E-value=43 Score=28.90 Aligned_cols=105 Identities=12% Similarity=0.010 Sum_probs=65.2
Q ss_pred EEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCC-------c--ccHHHHHHHHHHHhcCCCCcEE
Q 017085 179 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN-------A--QTKFESELRNYVMQKKIQDRVH 249 (377)
Q Consensus 179 ~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~-------~--~~~~~~~l~~~~~~~~~~~~v~ 249 (377)
.++.+|- +.-...+.+++.++.|++ -..+++..|.-.+ . .....+.+++.++++|++--..
T Consensus 28 ~~~iaGP-Csie~~~~~~~~A~~lk~---------~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te 97 (266)
T PRK13398 28 KIIIAGP-CAVESEEQMVKVAEKLKE---------LGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTE 97 (266)
T ss_pred EEEEEeC-CcCCCHHHHHHHHHHHHH---------cCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEe
Confidence 3445564 445677888888887655 3456666662111 0 1134567888888999874334
Q ss_pred EecCcCCHHHHHHhcCEEEecCCCCCCccchHHH-HHHHcCCcEEEeCC
Q 017085 250 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI-EAMAFQLPVLGTAA 297 (377)
Q Consensus 250 ~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~-Ea~a~g~PvI~s~~ 297 (377)
+... ..+..+...+|++-.+|. +.....++ ++...|+||+.++-
T Consensus 98 ~~d~-~~~~~l~~~vd~~kIga~---~~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 98 VMDT-RDVEEVADYADMLQIGSR---NMQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred eCCh-hhHHHHHHhCCEEEECcc---cccCHHHHHHHhcCCCcEEEeCC
Confidence 4443 344444455899999996 44444445 55668999999863
No 217
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=76.15 E-value=7.2 Score=28.71 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=25.8
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcC
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNT 65 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~ 65 (377)
++..|++.||+|.++-...+. ..+.....+.+||+|-+..
T Consensus 20 la~~l~~~G~~v~~~d~~~~~-----------------------~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 20 LAAYLRKAGHEVDILDANVPP-----------------------EELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHTTBEEEEEESSB-H-----------------------HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHCCCeEEEECCCCCH-----------------------HHHHHHHhcCCCcEEEEEc
Confidence 567788888888877433211 2334455667899988765
No 218
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=75.34 E-value=22 Score=25.58 Aligned_cols=67 Identities=10% Similarity=0.160 Sum_probs=46.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 286 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~ 286 (377)
..+.++|+....+. ...+.+...++.++++ +...+..+++...+....+.++.-. .+++.-.+++.+
T Consensus 32 gk~~lVI~A~D~s~--~~kkki~~~~~~~~vp--~~~~~t~~eLg~a~Gk~~~~~iai~--d~g~a~~l~~~~ 98 (104)
T PRK05583 32 KKVYLIIISNDISE--NSKNKFKNYCNKYNIP--YIEGYSKEELGNAIGRDEIKILGVK--DKNMAKKLLKLW 98 (104)
T ss_pred CCceEEEEeCCCCH--hHHHHHHHHHHHcCCC--EEEecCHHHHHHHhCCCCeEEEEEe--ChHHHHHHHHHH
Confidence 56888887764332 4678888888888776 3333666888888887666665555 677777777654
No 219
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=74.77 E-value=27 Score=32.11 Aligned_cols=88 Identities=11% Similarity=-0.007 Sum_probs=58.6
Q ss_pred hHHHHHHHcCCcEEEeCCC---CcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHH
Q 017085 280 RITIEAMAFQLPVLGTAAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 356 (377)
Q Consensus 280 ~~~~Ea~a~g~PvI~s~~~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 356 (377)
..+-=-|+||-.|+..... -..+.+....+-+-+...+ +.++|.++|..+.++++..++++++|++++.+..+.+.
T Consensus 228 ~RlkylL~c~SvVl~~~~~~~e~f~~~L~P~vHYVPV~~~~-d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~L~~~~ 306 (395)
T PF05686_consen 228 GRLKYLLACNSVVLKVKSPYYEFFYRALKPWVHYVPVKRDD-DLSDLEEKVEWLNAHDDEAQRIAENGQRFAREYLTMED 306 (395)
T ss_pred hhHHHHHcCCceEEEeCCcHHHHHHhhhcccccEEEecccc-chhhHHHHhhhcccChHHHHHHHHHHHHHHHHHhhhhH
Confidence 3344446666666654321 1112222333434444421 38999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 017085 357 MAERIAVVLKEV 368 (377)
Q Consensus 357 ~~~~~~~~~~~~ 368 (377)
+..-+..++.+.
T Consensus 307 ~~~Y~~~LL~eY 318 (395)
T PF05686_consen 307 VYCYWRRLLLEY 318 (395)
T ss_pred HHHHHHHHHHHH
Confidence 887666665543
No 220
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=72.98 E-value=9.1 Score=27.25 Aligned_cols=74 Identities=7% Similarity=0.015 Sum_probs=45.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHH--HHHcCCcEEEe
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE--AMAFQLPVLGT 295 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~E--a~a~g~PvI~s 295 (377)
++++|.|.... -..+.+++.+++.|++-.+.- ....++...+..+|+++.... -.+-..-++ +-..|+||...
T Consensus 4 ll~C~~GaSSs-~la~km~~~a~~~gi~~~i~a-~~~~e~~~~~~~~Dvill~PQ---v~~~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 4 LVLCAGGGTSG-LLANALNKGAKERGVPLEAAA-GAYGSHYDMIPDYDLVILAPQ---MASYYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred EEECCCCCCHH-HHHHHHHHHHHHCCCcEEEEE-eeHHHHHHhccCCCEEEEcCh---HHHHHHHHHHHhhhcCCCEEEe
Confidence 45566664332 467889999999998633332 223678888899998886543 222222233 33457899877
Q ss_pred C
Q 017085 296 A 296 (377)
Q Consensus 296 ~ 296 (377)
+
T Consensus 79 ~ 79 (99)
T cd05565 79 T 79 (99)
T ss_pred C
Confidence 6
No 221
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=72.84 E-value=25 Score=26.12 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=51.0
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhc-CEEE
Q 017085 190 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI-DVLV 268 (377)
Q Consensus 190 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~a-dv~l 268 (377)
.|....++++++ ...+++|+....+.. ...+.+..++++.+++ +.+.+..+++....... .+.+
T Consensus 33 ~G~~~v~kaikk------------gkakLVilA~D~s~~-~i~~~~~~lc~~~~Vp--~~~~~tk~eLG~a~Gk~~~~sv 97 (122)
T PRK04175 33 KGTNETTKAVER------------GIAKLVVIAEDVDPE-EIVAHLPLLCEEKKIP--YVYVPSKKDLGKAAGLEVGAAA 97 (122)
T ss_pred EcHHHHHHHHHc------------CCccEEEEeCCCChH-HHHHHHHHHHHHcCCC--EEEECCHHHHHHHhCCCCCeEE
Confidence 356777777652 568888877653211 2357899999999987 78888778888888765 3444
Q ss_pred ecCCCCCCccchHHHH
Q 017085 269 QNSQAWGECFGRITIE 284 (377)
Q Consensus 269 ~ps~~~~e~~~~~~~E 284 (377)
+.-. ..|+.-.+++
T Consensus 98 vaI~--d~g~a~~~~~ 111 (122)
T PRK04175 98 AAIV--DAGKAKELVE 111 (122)
T ss_pred EEEe--chhhhHHHHH
Confidence 3333 4555555443
No 222
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=72.63 E-value=9.1 Score=25.75 Aligned_cols=47 Identities=28% Similarity=0.302 Sum_probs=31.8
Q ss_pred cHhhHHHhcCceEEEEEecCCCc---chhHhhhhhhhhcccCceEEEccc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSE---EDEVIYSLEHKMWDRGVQVISAKG 48 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 48 (377)
++|..|.+.|.+|+++...+... .......+...+...|+++.....
T Consensus 13 E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~ 62 (80)
T PF00070_consen 13 ELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTK 62 (80)
T ss_dssp HHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEE
T ss_pred HHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCE
Confidence 78999999999999998654422 222333455666677887765443
No 223
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=72.36 E-value=30 Score=24.70 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=18.6
Q ss_pred cCCCeEEEEEecCCCcccHHHHHHHHHHHhc
Q 017085 212 EVPSVHAVIIGSDMNAQTKFESELRNYVMQK 242 (377)
Q Consensus 212 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~ 242 (377)
.+|+.+++++|+....+++. ..+.++++
T Consensus 61 ~fP~~kfiLIGDsgq~Dpei---Y~~ia~~~ 88 (100)
T PF09949_consen 61 DFPERKFILIGDSGQHDPEI---YAEIARRF 88 (100)
T ss_pred HCCCCcEEEEeeCCCcCHHH---HHHHHHHC
Confidence 45999999999976655433 34445544
No 224
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=71.55 E-value=25 Score=27.88 Aligned_cols=53 Identities=9% Similarity=0.237 Sum_probs=39.1
Q ss_pred CCCeEEEEEecCCCcccHH-HHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEEEecCC
Q 017085 213 VPSVHAVIIGSDMNAQTKF-ESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 213 ~~~~~l~i~G~~~~~~~~~-~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~l~ps~ 272 (377)
..+-+++|+|.| .. ...+.+...+.|. +|.+.... +++.+.+..||+++..+.
T Consensus 42 l~gk~vlViG~G-----~~~G~~~a~~L~~~g~--~V~v~~r~~~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 42 LAGKKVVVVGRS-----NIVGKPLAALLLNRNA--TVTVCHSKTKNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCCEEEEECCc-----HHHHHHHHHHHhhCCC--EEEEEECCchhHHHHHhhCCEEEEcCC
Confidence 367899999998 33 3335555555554 47777766 789999999999998765
No 225
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=71.47 E-value=19 Score=29.57 Aligned_cols=73 Identities=10% Similarity=0.091 Sum_probs=41.7
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHh-cCCCCcEEEecCcCCHHHHHHhc
Q 017085 186 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAAI 264 (377)
Q Consensus 186 ~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~g~~~~~~~~~~~a 264 (377)
++|.|- +.+.+.+.++.+ .....+++|+...-......++.+.+++ .++| .+.|.|..+ .+-..+
T Consensus 5 iDP~k~-e~~~~ia~~v~~---------~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lP-vilfp~~~~---~i~~~a 70 (205)
T TIGR01769 5 IDPEKS-DEIEKIAKNAKD---------AGTDAIMVGGSLGIVESNLDQTVKKIKKITNLP-VILFPGNVN---GLSRYA 70 (205)
T ss_pred cCCCcH-HHHHHHHHHHHh---------cCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCC-EEEECCCcc---ccCcCC
Confidence 455565 444444444433 4567788886532222334445555665 4565 566766543 344679
Q ss_pred CEEEecCC
Q 017085 265 DVLVQNSQ 272 (377)
Q Consensus 265 dv~l~ps~ 272 (377)
|.+++||.
T Consensus 71 D~~~~~sl 78 (205)
T TIGR01769 71 DAVFFMSL 78 (205)
T ss_pred CEEEEEEe
Confidence 99999885
No 226
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=70.73 E-value=21 Score=31.29 Aligned_cols=83 Identities=12% Similarity=0.209 Sum_probs=53.1
Q ss_pred CCeEE--EEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec--CcCCHH----HHHHhcCEEEecCCCC-CCccchHHHH
Q 017085 214 PSVHA--VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN--KTLTVA----PYLAAIDVLVQNSQAW-GECFGRITIE 284 (377)
Q Consensus 214 ~~~~l--~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g--~~~~~~----~~~~~adv~l~ps~~~-~e~~~~~~~E 284 (377)
|+++= +++..+.+......+++++.++..|+. |+-.+ ...|+. .+....|++..|.... .-++...+.+
T Consensus 157 Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~--vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~~ 234 (322)
T COG2984 157 PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLE--VVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQV 234 (322)
T ss_pred CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCE--EEEEecCcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHHHH
Confidence 55443 356666544445778888888888875 33222 234433 3446779998886531 1234455669
Q ss_pred HHHcCCcEEEeCCC
Q 017085 285 AMAFQLPVLGTAAG 298 (377)
Q Consensus 285 a~a~g~PvI~s~~~ 298 (377)
|...++|+++++.+
T Consensus 235 a~~~kiPli~sd~~ 248 (322)
T COG2984 235 ANKAKIPLIASDTS 248 (322)
T ss_pred HHHhCCCeecCCHH
Confidence 99999999999854
No 227
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=70.50 E-value=28 Score=27.43 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=44.4
Q ss_pred HHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccc---------hhhhccc--cccceeeeeccc
Q 017085 51 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK---------LDYVKHL--PLVAGAMIDSHV 119 (377)
Q Consensus 51 ~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~---------~~~~~~~--~~~~~~~~~s~~ 119 (377)
.+.....+|+|++.+-..-.-+..+.. ....+|.+..+|+-.-.|-. ..+...+ -.+|.++.+|..
T Consensus 53 ~~~~~~~~dll~aTsmldLa~l~gL~p---~l~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~ 129 (168)
T PF12038_consen 53 QIPLSHSYDLLFATSMLDLATLRGLRP---DLANVPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAF 129 (168)
T ss_pred ccccccCCCEEEeeccccHHHHHhhcc---CCCCCCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchh
Confidence 344556789999987442222222221 22346788889986432211 1111122 377999999998
Q ss_pred hhhHhhhhhhhh
Q 017085 120 TAEYWKNRTRER 131 (377)
Q Consensus 120 ~~~~~~~~~~~~ 131 (377)
-.+.+.+.....
T Consensus 130 nr~sFL~~~~~f 141 (168)
T PF12038_consen 130 NRDSFLDGIPSF 141 (168)
T ss_pred hHHHHHHHHHHH
Confidence 887776654433
No 228
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=70.29 E-value=4.8 Score=32.82 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=17.7
Q ss_pred cHhhHHHhcCceEEEEEecCC
Q 017085 2 ELAFLLRGVGTKVNWITIQKP 22 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~ 22 (377)
.|+++|++.||+|+|+++...
T Consensus 18 aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 18 ALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp HHHHHHTTTSSEEEEEEESSS
T ss_pred HHHHHHHhcCCeEEEEeCCCC
Confidence 478899888899999997755
No 229
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=69.99 E-value=42 Score=25.97 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=70.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhc---CEEEecCCCCCCccchHHHHHHHcCC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI---DVLVQNSQAWGECFGRITIEAMAFQL 290 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~a---dv~l~ps~~~~e~~~~~~~Ea~a~g~ 290 (377)
|+-.++|+-+.. ++...+....+..|+. |......++.....+.. -.+|---. ..|.|+.++|++....
T Consensus 8 pd~~lllvdDD~----~f~~~LaRa~e~RGf~--v~~a~~~~eal~~art~~PayAvvDlkL--~~gsGL~~i~~lr~~~ 79 (182)
T COG4567 8 PDKSLLLVDDDT----PFLRTLARAMERRGFA--VVTAESVEEALAAARTAPPAYAVVDLKL--GDGSGLAVIEALRERR 79 (182)
T ss_pred CCceeEEecCCh----HHHHHHHHHHhccCce--eEeeccHHHHHHHHhcCCCceEEEEeee--cCCCchHHHHHHHhcC
Confidence 555788887754 5778888888877764 55555444433333221 12222233 6789999999998876
Q ss_pred c----EEEeCCCCcccce---ecCcceeeecCCCCChhHHHHHHHHH
Q 017085 291 P----VLGTAAGGTTEIV---VNGTTGLLHPVGKEGITPLAKNIVKL 330 (377)
Q Consensus 291 P----vI~s~~~~~~e~~---~~~~~g~~~~~~~~~~~~la~~i~~l 330 (377)
| ||.|..+.++.-+ +-|.+-++..|.| .+++..++.+-
T Consensus 80 ~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAd--aDdi~aAl~~~ 124 (182)
T COG4567 80 ADMRIVVLTGYASIATAVEAVKLGACDYLAKPAD--ADDILAALLRR 124 (182)
T ss_pred CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCC--hHHHHHHHhhc
Confidence 5 6677766655443 4466678899988 99998888765
No 230
>PRK07714 hypothetical protein; Provisional
Probab=69.49 E-value=35 Score=24.28 Aligned_cols=76 Identities=12% Similarity=0.181 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEec
Q 017085 191 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQN 270 (377)
Q Consensus 191 g~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~p 270 (377)
|.+..++++++ ...+++|+....+. ...+.+...+...+++ +...+..+++...+......+..
T Consensus 22 G~~~v~~al~~------------g~~~lViiA~D~s~--~~~~ki~~~~~~~~vp--~~~~~sk~eLG~a~Gk~~~~~va 85 (100)
T PRK07714 22 GEELVLKEVRS------------GKAKLVLLSEDASV--NTTKKITDKCTYYNVP--MRKVENRQQLGHAIGKDERVVVA 85 (100)
T ss_pred cHHHHHHHHHh------------CCceEEEEeCCCCH--HHHHHHHHHHHhcCCC--EEEeCCHHHHHHHhCCCcceEEE
Confidence 46667776652 46788877664332 4677888888887776 44556557787777655333332
Q ss_pred CCCCCCccchHHHH
Q 017085 271 SQAWGECFGRITIE 284 (377)
Q Consensus 271 s~~~~e~~~~~~~E 284 (377)
-. .+++.-.+++
T Consensus 86 i~--d~g~a~~l~~ 97 (100)
T PRK07714 86 VL--DEGFAKKLRS 97 (100)
T ss_pred Ee--CchhHHHHHH
Confidence 23 4555555544
No 231
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=69.03 E-value=50 Score=31.00 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=71.0
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhc--CEEEecCCCCCCccchHHHHHHHc---CCc
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAF---QLP 291 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~a--dv~l~ps~~~~e~~~~~~~Ea~a~---g~P 291 (377)
+++++-+.. ..+..+....+..|. .|.......+....+... |++++=.. -.+.-|+.+++.+.. ++|
T Consensus 6 ~iLvVDDd~----~ir~~l~~~L~~~G~--~v~~a~~~~~al~~i~~~~~~lvl~Di~-mp~~~Gl~ll~~i~~~~~~~p 78 (464)
T COG2204 6 RILVVDDDP----DIRELLEQALELAGY--EVVTAESAEEALEALSESPFDLVLLDIR-MPGMDGLELLKEIKSRDPDLP 78 (464)
T ss_pred CEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEecC-CCCCchHHHHHHHHhhCCCCC
Confidence 456666542 355666666666664 355555545555555443 55554333 134557777776655 688
Q ss_pred EEE-eCCCCcccc---eecCcceeeecCCCCChhHHHHHHHHHhhCHHHHH
Q 017085 292 VLG-TAAGGTTEI---VVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRL 338 (377)
Q Consensus 292 vI~-s~~~~~~e~---~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~ 338 (377)
||. |..|.+... ++.|..-|+..|-+ .+.+...+.+.++......
T Consensus 79 VI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~--~~~L~~~v~ral~~~~~~~ 127 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRLGAFDFLEKPFD--LDRLLAIVERALELRELQR 127 (464)
T ss_pred EEEEeCCCCHHHHHHHHhcCcceeeeCCCC--HHHHHHHHHHHHHHhhhhh
Confidence 885 455654443 44566678889988 9999999999988655433
No 232
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=68.82 E-value=14 Score=26.17 Aligned_cols=75 Identities=13% Similarity=0.250 Sum_probs=48.5
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHH--HHHcCCcEEEe
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE--AMAFQLPVLGT 295 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~E--a~a~g~PvI~s 295 (377)
++++|.|.... -..+.+++.+++.|++-.|...+. .++......+|+++.... -.+-..-++ +.-.++||..-
T Consensus 3 l~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~~-~~~~~~~~~~Diil~~Pq---v~~~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 3 LLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVPE-SELEEYIDDADVVLLGPQ---VRYMLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred EEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEecH-HHHHHhcCCCCEEEEChh---HHHHHHHHHHHhccCCCcEEEc
Confidence 56777775544 356788999999998755555543 456667788998886543 222333344 34578898887
Q ss_pred CC
Q 017085 296 AA 297 (377)
Q Consensus 296 ~~ 297 (377)
+.
T Consensus 78 ~~ 79 (96)
T cd05564 78 DM 79 (96)
T ss_pred Ch
Confidence 63
No 233
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=68.54 E-value=89 Score=28.04 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=76.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc------CCHH----HHHHhcCEEEecCCCCCCccchHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT------LTVA----PYLAAIDVLVQNSQAWGECFGRITI 283 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~------~~~~----~~~~~adv~l~ps~~~~e~~~~~~~ 283 (377)
.+-+++++|.| +.....-+...+.|. .++.+.... +++. .+...+|+++..|....-+.|....
T Consensus 173 ~~k~vLvIGaG-----em~~l~a~~L~~~g~-~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 173 KKASLLFIGYS-----EINRKVAYYLQRQGY-SRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred cCCEEEEEccc-----HHHHHHHHHHHHcCC-CEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 56799999999 566666666677776 367777653 2332 5677999999853211344565566
Q ss_pred HHHHcCCcEEEeCCCCcccce--ecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017085 284 EAMAFQLPVLGTAAGGTTEIV--VNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 361 (377)
Q Consensus 284 Ea~a~g~PvI~s~~~~~~e~~--~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 361 (377)
|.+..-.+-+.-|..-..++- ....+-.+++ .++|.+.+.+-+ ..+.+....+.. -.+..+.++
T Consensus 247 ~~~~~~~~r~~iDLAvPRdId~v~~~~~v~Ly~-----iDdL~~i~~~n~---~~R~~~~~~ae~------iI~~~~~~~ 312 (338)
T PRK00676 247 ESLADIPDRIVFDFNVPRTFPWSETPFPHRYLD-----MDFISEWVQKHL---QCRKEVNNKHKL------SLREAAYKQ 312 (338)
T ss_pred HHHhhccCcEEEEecCCCCCccccccCCcEEEE-----hHHHHHHHHHHH---HHHHHHHHHHHH------HHHHHHHHH
Confidence 655432223555544333331 1222233444 667776665532 233333333333 345566677
Q ss_pred HHHHHHHHh
Q 017085 362 AVVLKEVLK 370 (377)
Q Consensus 362 ~~~~~~~~~ 370 (377)
.+.|++=.+
T Consensus 313 ~~~~~~~~~ 321 (338)
T PRK00676 313 WESYEKKLS 321 (338)
T ss_pred HHHHHHHHh
Confidence 777765443
No 234
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=67.93 E-value=53 Score=28.25 Aligned_cols=102 Identities=12% Similarity=0.103 Sum_probs=57.2
Q ss_pred HHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh--CH
Q 017085 257 VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT--HV 334 (377)
Q Consensus 257 ~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~--~~ 334 (377)
-..-++.||+++..... .|++=-.+++.+ .+.+++....++..+-- ..+--+..++.+ ...++++|...|. ||
T Consensus 46 d~~~l~~ADliv~~G~~-lE~~~~k~~~~~-~~~~v~~~~~~~~~~~~-~~dPH~Wldp~n--~~~~a~~I~~~L~~~dP 120 (264)
T cd01020 46 DAAKVSTADIVVYNGGG-YDPWMTKLLADT-KDVIVIAADLDGHDDKE-GDNPHLWYDPET--MSKVANALADALVKADP 120 (264)
T ss_pred HHHHHhhCCEEEEeCCC-chHHHHHHHHhc-CCceEEeeecccccCCC-CCCCceecCHhH--HHHHHHHHHHHHHHhCc
Confidence 34567888888876542 465555555554 34555554433211100 012224555555 7888888888776 78
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 335 ERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 335 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
+......+|+.++..+ .+...+++.+.+.
T Consensus 121 ~~~~~y~~N~~~~~~~---l~~l~~~~~~~~~ 149 (264)
T cd01020 121 DNKKYYQANAKKFVAS---LKPLAAKIAELSA 149 (264)
T ss_pred ccHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 7777777777665543 3444444444433
No 235
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=67.60 E-value=13 Score=26.21 Aligned_cols=76 Identities=9% Similarity=0.079 Sum_probs=48.0
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHH--cCCcEEEe
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--FQLPVLGT 295 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a--~g~PvI~s 295 (377)
++++|.|.... -..+.+++.+++.|++-.+.-.+. .++.+....+|++++... -.+-..-++..+ .|+||..-
T Consensus 7 Ll~C~~G~sSS-~l~~k~~~~~~~~gi~~~v~a~~~-~~~~~~~~~~Dvill~pq---i~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 7 LLLCAAGMSTS-LLVNKMNKAAEEYGVPVKIAAGSY-GAAGEKLDDADVVLLAPQ---VAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred EEECCCchhHH-HHHHHHHHHHHHCCCcEEEEEecH-HHHHhhcCCCCEEEECch---HHHHHHHHHHHhhhcCCCEEEe
Confidence 45667775433 366788888999988754544443 456667778898887553 222333444444 46799987
Q ss_pred CCC
Q 017085 296 AAG 298 (377)
Q Consensus 296 ~~~ 298 (377)
+..
T Consensus 82 ~~~ 84 (95)
T TIGR00853 82 NGA 84 (95)
T ss_pred Chh
Confidence 643
No 236
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=66.82 E-value=22 Score=28.74 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=29.3
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhh-----hcccEEEEc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTA-----LKADLIVLN 64 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Div~~~ 64 (377)
.||+++..+|++|++++.....+. ..++.++.......+... .+.|++++.
T Consensus 34 ~lA~~~~~~Ga~V~li~g~~~~~~------------p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~a 89 (185)
T PF04127_consen 34 ALAEEAARRGAEVTLIHGPSSLPP------------PPGVKVIRVESAEEMLEAVKELLPSADIIIMA 89 (185)
T ss_dssp HHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-
T ss_pred HHHHHHHHCCCEEEEEecCccccc------------cccceEEEecchhhhhhhhccccCcceeEEEe
Confidence 589999999999999997642110 246666665554433321 345777765
No 237
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=66.55 E-value=36 Score=29.18 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=32.3
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~ 298 (377)
+++.+++..+|+++.-|. .+...-.+..|+..|+|+|+...|
T Consensus 52 ~dl~~ll~~~DvVid~t~--p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 52 DDLEAVLADADVLIDFTT--PEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred CCHHHhccCCCEEEECCC--HHHHHHHHHHHHHcCCCEEEECCC
Confidence 567777778999996665 555566677899999999987544
No 238
>PRK10494 hypothetical protein; Provisional
Probab=66.40 E-value=67 Score=27.61 Aligned_cols=83 Identities=12% Similarity=0.022 Sum_probs=54.6
Q ss_pred CCCeEEEEEecCCC-cccHHHHHHHHHHHhcCCCCcEEEec-Cc----C---CHHHHHHhcCEEEecCCCCCCccchHHH
Q 017085 213 VPSVHAVIIGSDMN-AQTKFESELRNYVMQKKIQDRVHFVN-KT----L---TVAPYLAAIDVLVQNSQAWGECFGRITI 283 (377)
Q Consensus 213 ~~~~~l~i~G~~~~-~~~~~~~~l~~~~~~~~~~~~v~~~g-~~----~---~~~~~~~~adv~l~ps~~~~e~~~~~~~ 283 (377)
++..++++.|+... ....+.+-.++.+.++|++..-++.. .. + ...+++....+++.+| .-.++....
T Consensus 119 ~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLVTs---a~Hm~RA~~ 195 (259)
T PRK10494 119 NPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLVTS---ASHLPRAMI 195 (259)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEECC---HHHHHHHHH
Confidence 36788888886432 22234556677788899987544443 22 2 2445555556888877 467788888
Q ss_pred HHHHcCCcEEEeCCC
Q 017085 284 EAMAFQLPVLGTAAG 298 (377)
Q Consensus 284 Ea~a~g~PvI~s~~~ 298 (377)
.+-..|..|+...++
T Consensus 196 ~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 196 FFQQEGLNPLPAPAN 210 (259)
T ss_pred HHHHcCCceeecCCc
Confidence 888899988876543
No 239
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=65.73 E-value=22 Score=33.92 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=26.8
Q ss_pred HhhHHHhcC-ceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCc
Q 017085 3 LAFLLRGVG-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTA 66 (377)
Q Consensus 3 la~~L~~~G-~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~ 66 (377)
||-.|++.| |+|.++-....+. ....+...+.+.+||+|-+...
T Consensus 28 lAa~L~~~G~~~V~iiD~~~~~~--------------------~~~~~~~~l~~~~pdvVgis~~ 72 (497)
T TIGR02026 28 IGGALLDAGYHDVTFLDAMTGPL--------------------TDEKLVERLRAHCPDLVLITAI 72 (497)
T ss_pred HHHHHHhcCCcceEEecccccCC--------------------CHHHHHHHHHhcCcCEEEEecC
Confidence 566788889 7998885332210 1122334456678999887653
No 240
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=65.33 E-value=42 Score=28.36 Aligned_cols=81 Identities=7% Similarity=0.023 Sum_probs=55.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-----CC---HHHHHHhcCEEEecCCCCCCccchHHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-----LT---VAPYLAAIDVLVQNSQAWGECFGRITIEA 285 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-----~~---~~~~~~~adv~l~ps~~~~e~~~~~~~Ea 285 (377)
+.-++++.|+......++.+.+++.+-+.|++..-++..+. +. ..+++..-++.+.++ .-.++..+.-+
T Consensus 81 k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq---~fHm~RA~~ia 157 (239)
T PRK10834 81 KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQ---RFHCERALFIA 157 (239)
T ss_pred CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECC---HHHHHHHHHHH
Confidence 45577788875433334566788888899999887777653 22 234454445667766 46678888888
Q ss_pred HHcCCcEEEeCC
Q 017085 286 MAFQLPVLGTAA 297 (377)
Q Consensus 286 ~a~g~PvI~s~~ 297 (377)
-..|..+++...
T Consensus 158 ~~~Gi~~~~~~a 169 (239)
T PRK10834 158 LHMGIQAQCYAV 169 (239)
T ss_pred HHcCCceEEEeC
Confidence 899998877643
No 241
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=64.96 E-value=14 Score=33.31 Aligned_cols=82 Identities=9% Similarity=-0.089 Sum_probs=47.6
Q ss_pred CHHHHHHhcCEEEecCCCCCCcc-chHHHHHHHcCCcEEEeC--CCCcccceecCcceee-ecCCCCChhHHHHHHHHHh
Q 017085 256 TVAPYLAAIDVLVQNSQAWGECF-GRITIEAMAFQLPVLGTA--AGGTTEIVVNGTTGLL-HPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~e~~-~~~~~Ea~a~g~PvI~s~--~~~~~e~~~~~~~g~~-~~~~~~~~~~la~~i~~l~ 331 (377)
+...+++....++..-.+..+++ -=++.+|+..|+-.|.-. .+...+++.. +.++ ++.- .++++||+.|..+.
T Consensus 220 ~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~--~SfI~~~df-~s~~~La~yl~~l~ 296 (349)
T PF00852_consen 220 CKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPP--NSFIHVDDF-KSPKELADYLKYLD 296 (349)
T ss_dssp -HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-G--GGSEEGGGS-SSHHHHHHHHHHHH
T ss_pred cccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCC--CCccchhcC-CCHHHHHHHHHHHh
Confidence 35566666666664211002222 236789999998777666 5667777644 3333 2222 23999999999999
Q ss_pred hCHHHHHHH
Q 017085 332 THVERRLTM 340 (377)
Q Consensus 332 ~~~~~~~~~ 340 (377)
+|++++.+.
T Consensus 297 ~n~~~Y~~y 305 (349)
T PF00852_consen 297 KNDELYNKY 305 (349)
T ss_dssp T-HHHHH--
T ss_pred cCHHHHhhh
Confidence 999877654
No 242
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=64.39 E-value=67 Score=25.11 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=44.1
Q ss_pred CeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc---ccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 177 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---QTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 177 ~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
...++++|- ... ....++..+..+ -+..+.+++...-. .++..+..++.+.+.| ..+.+.
T Consensus 2 gl~i~~vGD-~~~----rv~~Sl~~~~~~--------~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~-- 64 (158)
T PF00185_consen 2 GLKIAYVGD-GHN----RVAHSLIELLAK--------FGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG--GKITIT-- 64 (158)
T ss_dssp TEEEEEESS-TTS----HHHHHHHHHHHH--------TTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT--TEEEEE--
T ss_pred CCEEEEECC-CCC----hHHHHHHHHHHH--------cCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC--CCeEEE--
Confidence 467889994 222 233333333332 24668888875311 1123444455555554 356666
Q ss_pred cCCHHHHHHhcCEEEecCC
Q 017085 254 TLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~ 272 (377)
+++.+.+..+|++....-
T Consensus 65 -~~~~e~l~~aDvvy~~~~ 82 (158)
T PF00185_consen 65 -DDIEEALKGADVVYTDRW 82 (158)
T ss_dssp -SSHHHHHTT-SEEEEESS
T ss_pred -eCHHHhcCCCCEEEEcCc
Confidence 688899999999776653
No 243
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=64.03 E-value=1.1e+02 Score=28.48 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=27.7
Q ss_pred CCHHHHHHhcCEEEecCCC-CCCccchH----HHHHHHcCCcEEEeCC
Q 017085 255 LTVAPYLAAIDVLVQNSQA-WGECFGRI----TIEAMAFQLPVLGTAA 297 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~-~~e~~~~~----~~Ea~a~g~PvI~s~~ 297 (377)
.++...++.||+++...-+ +.+.+|.. ++-|..+|+|++....
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 3556779999999975422 12323321 3467889999998753
No 244
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=63.72 E-value=1.1e+02 Score=27.54 Aligned_cols=107 Identities=7% Similarity=-0.003 Sum_probs=64.4
Q ss_pred CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc---------ccHHHHHHHHHHHhcCCCC
Q 017085 176 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQD 246 (377)
Q Consensus 176 ~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~---------~~~~~~~l~~~~~~~~~~~ 246 (377)
+.+.++.+|. +.-.+.+.+++.++.+++ ...+++--|.-.+. ..+-.+.+.+..++.|++-
T Consensus 99 ~~~l~vIAGP-CsIEs~eq~l~~A~~lk~---------~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~ 168 (352)
T PRK13396 99 NHPVVVVAGP-CSVENEEMIVETAKRVKA---------AGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGI 168 (352)
T ss_pred CCeEEEEEeC-CcccCHHHHHHHHHHHHH---------cCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcE
Confidence 4444555663 445677888998887655 35566554443221 1123566677777888862
Q ss_pred cEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHH-HHcCCcEEEeC
Q 017085 247 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA-MAFQLPVLGTA 296 (377)
Q Consensus 247 ~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea-~a~g~PvI~s~ 296 (377)
-...... +++..+...+|++-.+|. +.....++++ ...|+||+.+.
T Consensus 169 ~tev~d~-~~v~~~~~~~d~lqIga~---~~~n~~LL~~va~t~kPVllk~ 215 (352)
T PRK13396 169 ITEVMDA-ADLEKIAEVADVIQVGAR---NMQNFSLLKKVGAQDKPVLLKR 215 (352)
T ss_pred EEeeCCH-HHHHHHHhhCCeEEECcc---cccCHHHHHHHHccCCeEEEeC
Confidence 2222222 444444455899999997 3333445654 47899999886
No 245
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=63.53 E-value=1.2e+02 Score=27.55 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=65.9
Q ss_pred HHHHHHHhCCC--CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHH-
Q 017085 164 REHVRESLGVR--NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM- 240 (377)
Q Consensus 164 ~~~~r~~~~~~--~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~- 240 (377)
+..+.+++|++ ++..++..++ -+.-.+..++++++.. ...+++++-.+. ....+.....
T Consensus 167 ~~~~~~~lg~~~~~~~~~vSLF~--Ye~~al~~ll~~~~~~----------~~pv~lLvp~Gr------~~~~v~~~l~~ 228 (371)
T TIGR03837 167 QRALLRRLGVGPEPDALLVSLFC--YENAALPALLDALAQS----------GSPVHLLVPEGR------ALAAVAAWLGD 228 (371)
T ss_pred HHHHHHHcCCCCCCCCeEEEEEe--cCChhHHHHHHHHHhC----------CCCeEEEecCCc------cHHHHHHHhCc
Confidence 45577788885 4555554444 2345578888887642 145665554442 2333433331
Q ss_pred ---------hcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 241 ---------QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 241 ---------~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
..| .-.+++++++ ++.-.++-.||+-+.-.. - +.+-|.-+|+|.|=-
T Consensus 229 ~~~~~g~~~~~g-~L~~~~LPf~~Q~~yD~LLW~cD~NfVRGE----D---SFVRAqWAgkPfvWh 286 (371)
T TIGR03837 229 ALLAAGDVHRRG-ALTVAVLPFVPQDDYDRLLWACDLNFVRGE----D---SFVRAQWAGKPFVWH 286 (371)
T ss_pred cccCCccccccC-ceEEEEcCCCChhhHHHHHHhChhcEeech----h---HHHHHHHcCCCceee
Confidence 111 0146777775 789999999999776543 2 689999999999844
No 246
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=63.45 E-value=50 Score=23.52 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=28.6
Q ss_pred CHHHHHHhcCEEEecCCCCCCccchH-HHHHHHcCCcEEEeCCCCcccce
Q 017085 256 TVAPYLAAIDVLVQNSQAWGECFGRI-TIEAMAFQLPVLGTAAGGTTEIV 304 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~e~~~~~-~~Ea~a~g~PvI~s~~~~~~e~~ 304 (377)
++...+..+++++..+. .+...-. .-+|-+.|+||-+.|.+...+++
T Consensus 53 ~~~~~l~~~~lV~~at~--d~~~n~~i~~~a~~~~i~vn~~D~p~~~dF~ 100 (103)
T PF13241_consen 53 EFEEDLDGADLVFAATD--DPELNEAIYADARARGILVNVVDDPELCDFI 100 (103)
T ss_dssp S-GGGCTTESEEEE-SS---HHHHHHHHHHHHHTTSEEEETT-CCCCSEE
T ss_pred hHHHHHhhheEEEecCC--CHHHHHHHHHHHhhCCEEEEECCCcCCCeEE
Confidence 34456788888887664 3333333 33566699999999987766554
No 247
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=63.04 E-value=84 Score=25.77 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=44.2
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
.+.+++++... ..+++.+++.. ..+.+.... -....+..+|+++..+. .+.....+.+....+.+|-
T Consensus 32 ~ga~V~VIs~~------~~~~l~~l~~~----~~i~~~~~~-~~~~~l~~adlViaaT~--d~elN~~i~~~a~~~~lvn 98 (202)
T PRK06718 32 YGAHIVVISPE------LTENLVKLVEE----GKIRWKQKE-FEPSDIVDAFLVIAATN--DPRVNEQVKEDLPENALFN 98 (202)
T ss_pred CCCeEEEEcCC------CCHHHHHHHhC----CCEEEEecC-CChhhcCCceEEEEcCC--CHHHHHHHHHHHHhCCcEE
Confidence 34566677543 23445555443 235554432 12345678998887765 4444555666657788888
Q ss_pred EeCCCCcccc
Q 017085 294 GTAAGGTTEI 303 (377)
Q Consensus 294 ~s~~~~~~e~ 303 (377)
+.|.+...++
T Consensus 99 ~~d~~~~~~f 108 (202)
T PRK06718 99 VITDAESGNV 108 (202)
T ss_pred ECCCCccCeE
Confidence 8776554444
No 248
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=62.05 E-value=61 Score=23.90 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhc-CEEE
Q 017085 190 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI-DVLV 268 (377)
Q Consensus 190 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~a-dv~l 268 (377)
.|....++++.+ ....++|+....+.. ...+.+..+++..+++ +.+.+..+++....... .+.+
T Consensus 29 ~G~~~v~kaikk------------gka~LVilA~D~s~~-~~~~~i~~lc~~~~Ip--~~~~~sk~eLG~a~Gk~~~~sv 93 (117)
T TIGR03677 29 KGTNEVTKAVER------------GIAKLVVIAEDVEPP-EIVAHLPALCEEKGIP--YVYVKKKEDLGAAAGLEVGAAS 93 (117)
T ss_pred EcHHHHHHHHHc------------CCccEEEEeCCCCcH-HHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCCCCCeEE
Confidence 456777776642 568888776643211 2468899999999987 77777778888887763 3444
Q ss_pred ecCCCCCCccchHHHH
Q 017085 269 QNSQAWGECFGRITIE 284 (377)
Q Consensus 269 ~ps~~~~e~~~~~~~E 284 (377)
+.-. .+|+.-.++.
T Consensus 94 vaI~--d~g~a~~~~~ 107 (117)
T TIGR03677 94 AAIV--DEGKAEELLK 107 (117)
T ss_pred EEEE--chhhhHHHHH
Confidence 3333 4555555443
No 249
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=61.86 E-value=18 Score=24.85 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=34.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
++++|.|....--....+++.+++.|++-.+.... ..+...+...+|+++....
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~-~~~~~~~~~~~D~il~~~~ 56 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS-ILEVEEIADDADLILLTPQ 56 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE-TTTHHHHHTT-SEEEEEES
T ss_pred EEECCChHHHHHHHHHHHHHHHHhccCceEEEEec-ccccccccCCCcEEEEcCc
Confidence 45677775433223488899999999764444444 4567777788999987654
No 250
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=61.65 E-value=59 Score=23.57 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=45.7
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+. ..+..++..++++.+ .. .++.+++. ..|+++..+. ...-.-.+.+++..|++
T Consensus 24 ~~~~v~~v~d~------~~~~~~~~~~~~~~~----~~---~~~~~ll~~~~~D~V~I~tp--~~~h~~~~~~~l~~g~~ 88 (120)
T PF01408_consen 24 PDFEVVAVCDP------DPERAEAFAEKYGIP----VY---TDLEELLADEDVDAVIIATP--PSSHAEIAKKALEAGKH 88 (120)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTSE----EE---SSHHHHHHHTTESEEEEESS--GGGHHHHHHHHHHTTSE
T ss_pred CCcEEEEEEeC------CHHHHHHHHHHhccc----ch---hHHHHHHHhhcCCEEEEecC--CcchHHHHHHHHHcCCE
Confidence 66776633332 235556667777654 22 45778887 6888887776 45555677899999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 89 v~~EK 93 (120)
T PF01408_consen 89 VLVEK 93 (120)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 98875
No 251
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=61.52 E-value=1.4e+02 Score=27.66 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=65.6
Q ss_pred HHHHHHHhC-C-----CCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHH
Q 017085 164 REHVRESLG-V-----RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 237 (377)
Q Consensus 164 ~~~~r~~~~-~-----~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~ 237 (377)
+..+.++|| . +++..+.+...+..+-.-..-+++.+.+ .+|++.+++.-..+- -.+..++
T Consensus 31 ~~r~~eRfg~~~~~~~~~~p~vWiHaaSVGEv~a~~pLv~~l~~----------~~P~~~ilvTt~T~T----g~e~a~~ 96 (419)
T COG1519 31 RKRLGERFGFYKPPVKPEGPLVWIHAASVGEVLAALPLVRALRE----------RFPDLRILVTTMTPT----GAERAAA 96 (419)
T ss_pred HHHHHHHhcccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHHH----------hCCCCCEEEEecCcc----HHHHHHH
Confidence 455566666 2 1234556666666665555555554432 568999888764321 1233322
Q ss_pred HHHhcCCCCcEEEecCc--CCHHHHH--HhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 238 YVMQKKIQDRVHFVNKT--LTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 238 ~~~~~~~~~~v~~~g~~--~~~~~~~--~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++-...+.+++.- .-+..++ -.-|++++-- .|-+|+.+.|+-..|+|.+.-+
T Consensus 97 ---~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~E---tElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 97 ---LFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIME---TELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred ---HcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEEe---ccccHHHHHHHHHcCCCEEEEe
Confidence 33322344555542 2244444 3466766644 6899999999999999999654
No 252
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=61.43 E-value=29 Score=29.60 Aligned_cols=99 Identities=13% Similarity=0.017 Sum_probs=54.2
Q ss_pred HHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccc-eecCcceeeecCCCCChhHHHHHHHHHhh--CHH
Q 017085 259 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI-VVNGTTGLLHPVGKEGITPLAKNIVKLAT--HVE 335 (377)
Q Consensus 259 ~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~-~~~~~~g~~~~~~~~~~~~la~~i~~l~~--~~~ 335 (377)
.-++.||+++..... .|++--.+.++.......+..-..++... -.++-. +..++.+ ...++++|...+. +|+
T Consensus 43 ~~l~~Adlvv~~G~~-~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~npH-~Wldp~~--~~~~~~~Ia~~L~~~~P~ 118 (256)
T PF01297_consen 43 KKLQKADLVVYNGLG-LEPWLEKLLESSQNPKVKVIDLSEGIDLDHHGHNPH-VWLDPEN--AKKMAEAIADALSELDPA 118 (256)
T ss_dssp HHHHHSSEEEES-TT-TSCCHHHHHHTTTTTTTEEEETTTTS-GSTTCBEST-GGGSHHH--HHHHHHHHHHHHHHHTGG
T ss_pred HHHHhCCEEEEeCCc-cchhhhhhhhcccccccceEEeecccccccCCCCCc-hHHHHHH--HHHHHHHHHHHHHHhCcc
Confidence 556889999987653 67776666655555555555444444221 111222 3334444 6777777776655 777
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017085 336 RRLTMGKRGYERVKEIFQEHHMAERIAVV 364 (377)
Q Consensus 336 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 364 (377)
......+|+.++..+ ++...+++.+.
T Consensus 119 ~~~~y~~N~~~~~~~---L~~l~~~~~~~ 144 (256)
T PF01297_consen 119 NKDYYEKNAEKYLKE---LDELDAEIKEK 144 (256)
T ss_dssp GHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 666666666665433 44444444333
No 253
>PRK12862 malic enzyme; Reviewed
Probab=60.76 E-value=1.3e+02 Score=30.43 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=64.4
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-CcEEEecC------------
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK------------ 253 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~g~------------ 253 (377)
+.+.|.-.+. ++-+...++-.|.+..+.++++.|.| ..---+-+++...|+. .++.+...
T Consensus 167 DD~~GTa~v~--la~l~~a~~~~~~~~~~~~iv~~GaG-----aag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l 239 (763)
T PRK12862 167 DDQHGTAIIV--AAALLNGLKLVGKDIEDVKLVASGAG-----AAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELM 239 (763)
T ss_pred cCcccHHHHH--HHHHHHHHHHhCCChhhcEEEEEChh-----HHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccc
Confidence 3456654332 22223333333334578999999998 3444555566667875 36655530
Q ss_pred ------------cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 254 ------------TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 254 ------------~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
...+.+.+..+|+++-.|. ...|.--+++.|+ ..|+|-.
T Consensus 240 ~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~--~g~~~~~~v~~M~-~~piifa 290 (763)
T PRK12862 240 DPWKARYAQKTDARTLAEVIEGADVFLGLSA--AGVLKPEMVKKMA-PRPLIFA 290 (763)
T ss_pred cHHHHHHhhhcccCCHHHHHcCCCEEEEcCC--CCCCCHHHHHHhc-cCCEEEe
Confidence 0357788888999998887 6778888999998 7898865
No 254
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=60.51 E-value=99 Score=25.77 Aligned_cols=72 Identities=18% Similarity=0.295 Sum_probs=43.2
Q ss_pred cCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe-CCCCcccceecCcceeeecCCCCCh
Q 017085 242 KKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGI 320 (377)
Q Consensus 242 ~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s-~~~~~~e~~~~~~~g~~~~~~~~~~ 320 (377)
+..++...|...... |++|.-.. .|. ..+++||.-+++|+|+- |....++++. +.++..| |.
T Consensus 160 ~~~pd~~~f~~t~~~--------D~vvvln~--~e~-~sAilEA~K~~IPTIgIVDtN~~P~liT-----YpVPaND-Ds 222 (251)
T KOG0832|consen 160 LSLPDALCFLPTLTP--------DLVVVLNP--EEN-HSAILEAAKMAIPTIGIVDTNCNPELIT-----YPVPAND-DS 222 (251)
T ss_pred cCCCcceeecccCCc--------ceeEecCc--ccc-cHHHHHHHHhCCCeEEEecCCCCcccee-----eccCCCC-Cc
Confidence 445666676664321 87776554 444 55899999999999976 4545566552 3444443 34
Q ss_pred hHHHHHHHHH
Q 017085 321 TPLAKNIVKL 330 (377)
Q Consensus 321 ~~la~~i~~l 330 (377)
-.-.+-+..+
T Consensus 223 ~~sv~f~~~l 232 (251)
T KOG0832|consen 223 PASVEFILNL 232 (251)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 255
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=60.11 E-value=58 Score=22.97 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---cCCcEEE-eCCCC---cc
Q 017085 231 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQLPVLG-TAAGG---TT 301 (377)
Q Consensus 231 ~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~g~PvI~-s~~~~---~~ 301 (377)
..+.++..++..|+. .+......++..+.+.. .|++++-... ...-|..+++.+. .++|+|+ |+... ..
T Consensus 10 ~~~~l~~~l~~~~~~-~v~~~~~~~~~~~~~~~~~~d~iiid~~~-~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~ 87 (112)
T PF00072_consen 10 IRELLEKLLERAGYE-EVTTASSGEEALELLKKHPPDLIIIDLEL-PDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQ 87 (112)
T ss_dssp HHHHHHHHHHHTTEE-EEEEESSHHHHHHHHHHSTESEEEEESSS-SSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHH
T ss_pred HHHHHHHHHHhCCCC-EEEEECCHHHHHHHhcccCceEEEEEeee-ccccccccccccccccccccEEEecCCCCHHHHH
Confidence 344444444444331 23333333333333322 4566655431 3344555555443 3567664 33322 34
Q ss_pred cceecCcceeeecCCCCChhHHHHHHH
Q 017085 302 EIVVNGTTGLLHPVGKEGITPLAKNIV 328 (377)
Q Consensus 302 e~~~~~~~g~~~~~~~~~~~~la~~i~ 328 (377)
+.++.|..|++..|-+ .+++.++|+
T Consensus 88 ~~~~~g~~~~l~kp~~--~~~l~~~i~ 112 (112)
T PF00072_consen 88 EALRAGADDYLSKPFS--PEELRAAIN 112 (112)
T ss_dssp HHHHTTESEEEESSSS--HHHHHHHHH
T ss_pred HHHHCCCCEEEECCCC--HHHHHHhhC
Confidence 4455678899999987 899888774
No 256
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.10 E-value=12 Score=32.47 Aligned_cols=85 Identities=24% Similarity=0.255 Sum_probs=54.3
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC------cccceec--CcceeeecCCCCChhHHHHH
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG------TTEIVVN--GTTGLLHPVGKEGITPLAKN 326 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~------~~e~~~~--~~~g~~~~~~~~~~~~la~~ 326 (377)
+...+.+..+|+.+ ..-|+..-.+...|+|||....-| +++--.. |..=.++.+ ..+-+..
T Consensus 303 qsfadiLH~adaal-------gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~----~aq~a~~ 371 (412)
T COG4370 303 QSFADILHAADAAL-------GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP----EAQAAAQ 371 (412)
T ss_pred HHHHHHHHHHHHHH-------HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC----chhhHHH
Confidence 56888888888854 223566678899999999986332 2221111 222233333 3455555
Q ss_pred HHH-HhhCHHHHHHHHHHHHHHHHH
Q 017085 327 IVK-LATHVERRLTMGKRGYERVKE 350 (377)
Q Consensus 327 i~~-l~~~~~~~~~~~~~~~~~~~~ 350 (377)
+.+ ++.|++....++.++.+++-+
T Consensus 372 ~~q~ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 372 AVQELLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred HHHHHhcChHHHHHHHhcchhhccC
Confidence 555 899999888888888877654
No 257
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=60.02 E-value=50 Score=30.82 Aligned_cols=52 Identities=25% Similarity=0.281 Sum_probs=37.1
Q ss_pred HhcCCCCcEEEecCcCCHHHHHHhcC-EEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC
Q 017085 240 MQKKIQDRVHFVNKTLTVAPYLAAID-VLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 240 ~~~~~~~~v~~~g~~~~~~~~~~~ad-v~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~ 299 (377)
.++..+.+|+++..-=+-..++...| |+..+|. .-+||+.||+|+++...+-
T Consensus 202 t~~~~~~r~~ll~edfnpisll~~~dkvy~~ts~--------mgfeall~~~~~~~fg~p~ 254 (671)
T COG3563 202 TQLSQQHRVHLLAEDFNPISLLQNVDKVYCVTSQ--------MGFEALLCGKPLTTFGLPW 254 (671)
T ss_pred hhhccCceEEEecccCChHHHHHhcceeEEeecc--------ccHHHHhcCCceeeecchh
Confidence 34445678888876545568888888 4555554 3489999999999987553
No 258
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=59.03 E-value=1e+02 Score=25.54 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=48.8
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC-------cCCHHHHHHhcCEEEecCCC-------CCC-ccc
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-------TLTVAPYLAAIDVLVQNSQA-------WGE-CFG 279 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~-------~~~~~~~~~~adv~l~ps~~-------~~e-~~~ 279 (377)
+.++.++.........+.+++.+..+++|... +.++-. .+++.+.+..||++++..-+ |.+ +.-
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~-v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~ 107 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGARE-VEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLL 107 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCce-eEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHH
Confidence 44555655433222245667777778888752 333321 24567889999988865421 111 122
Q ss_pred hHHHHHHHcCCcEEEeCCCC
Q 017085 280 RITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 280 ~~~~Ea~a~g~PvI~s~~~~ 299 (377)
-.+.++...|+|++.+..|.
T Consensus 108 ~~l~~~~~~G~v~~G~SAGA 127 (217)
T cd03145 108 DALRKVYRGGVVIGGTSAGA 127 (217)
T ss_pred HHHHHHHHcCCEEEEccHHH
Confidence 34557788899999876553
No 259
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=58.92 E-value=1e+02 Score=25.36 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=63.9
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC
Q 017085 165 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 244 (377)
Q Consensus 165 ~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 244 (377)
..+++++.......+++++|. ...|=|-++-| +.| +. ..-++.++..|+.... ..+......+.++.
T Consensus 38 ~~i~~~~~~~~~~~v~vlcG~--GnNGGDG~VaA-R~L----~~---~G~~V~v~~~~~~~~~---~~~~a~~~~~~l~~ 104 (203)
T COG0062 38 RAILREYPLGRARRVLVLCGP--GNNGGDGLVAA-RHL----KA---AGYAVTVLLLGDPKKL---KTEAARANLKSLGI 104 (203)
T ss_pred HHHHHHcCcccCCEEEEEECC--CCccHHHHHHH-HHH----Hh---CCCceEEEEeCCCCCc---cHHHHHHHHHhhcC
Confidence 445566654334567777783 45677776643 433 22 2257888888875321 23333444444554
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEecCCC------CCCccchHHHHHH-HcCCcEEEeCCC
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQNSQA------WGECFGRITIEAM-AFQLPVLGTAAG 298 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ps~~------~~e~~~~~~~Ea~-a~g~PvI~s~~~ 298 (377)
+..+......+ ....+|++|-.-.. ..|.+. .++|.+ ..|+|+|+-|.+
T Consensus 105 ~~~v~~~~~~~----~~~~~dvIVDalfG~G~~g~lrep~a-~~Ie~iN~~~~pivAVDiP 160 (203)
T COG0062 105 GGVVKIKELED----EPESADVIVDALFGTGLSGPLREPFA-SLIEAINASGKPIVAVDIP 160 (203)
T ss_pred Ccceeeccccc----ccccCCEEEEeceecCCCCCCccHHH-HHHHHHHhcCCceEEEeCC
Confidence 43343333322 66788988843220 122223 455555 499999999865
No 260
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=58.68 E-value=80 Score=24.14 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=48.9
Q ss_pred cccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHc
Q 017085 210 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 288 (377)
Q Consensus 210 ~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~ 288 (377)
|.+..+-+++++|.+. ...+.+..++.+.|. .|...... .++.+..+.||+++...- .. ++.--|-+.-
T Consensus 23 ~~~~~gk~v~VvGrs~----~vG~pla~lL~~~ga--tV~~~~~~t~~l~~~v~~ADIVvsAtg--~~--~~i~~~~ikp 92 (140)
T cd05212 23 GVRLDGKKVLVVGRSG----IVGAPLQCLLQRDGA--TVYSCDWKTIQLQSKVHDADVVVVGSP--KP--EKVPTEWIKP 92 (140)
T ss_pred CCCCCCCEEEEECCCc----hHHHHHHHHHHHCCC--EEEEeCCCCcCHHHHHhhCCEEEEecC--CC--CccCHHHcCC
Confidence 3345678899999975 345556666655543 46666543 579999999999997654 22 4344566667
Q ss_pred CCcEE
Q 017085 289 QLPVL 293 (377)
Q Consensus 289 g~PvI 293 (377)
|.-|+
T Consensus 93 Ga~Vi 97 (140)
T cd05212 93 GATVI 97 (140)
T ss_pred CCEEE
Confidence 76666
No 261
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=58.68 E-value=1.8e+02 Score=28.06 Aligned_cols=79 Identities=10% Similarity=-0.037 Sum_probs=42.7
Q ss_pred HHHHhCCCCCCeEEEE-----eccccccchhHHHHHHHHHHHHHHhhh-cccCCCeEEEEEecCCCcccHHHHHHHHHHH
Q 017085 167 VRESLGVRNEDLLFAI-----INSVSRGKGQDLFLHSFYESLELIKEK-KLEVPSVHAVIIGSDMNAQTKFESELRNYVM 240 (377)
Q Consensus 167 ~r~~~~~~~~~~~i~~-----~G~~~~~Kg~~~ll~a~~~l~~~l~~~-~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~ 240 (377)
.+++.+++.+.+++.. .| +...|.+..++++-+....-++. ....++-++.|+|+-... +....+++++++
T Consensus 168 ~~~~~~~p~~~pVi~v~TpgF~G--s~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~ 244 (515)
T TIGR01286 168 AKKEGFIPDDFPVPFAHTPSFVG--SHITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILS 244 (515)
T ss_pred HHHhcCCCCCCceEEeeCCCCcc--cHHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHH
Confidence 4455555444333322 34 34578888888776532211100 001134567788643211 135688999999
Q ss_pred hcCCCCcE
Q 017085 241 QKKIQDRV 248 (377)
Q Consensus 241 ~~~~~~~v 248 (377)
.+|++.++
T Consensus 245 ~~Gi~~~~ 252 (515)
T TIGR01286 245 LMGVGYTL 252 (515)
T ss_pred HcCCCeEE
Confidence 99997544
No 262
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=58.54 E-value=42 Score=28.02 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=34.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHH-hcCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~-~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
.....+++|+...-......++.+.++ ..+++ .+.|.|..+.+ ...+|.+++||.
T Consensus 40 ~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lP-vilfP~~~~~i---s~~aDavff~sv 95 (240)
T COG1646 40 AGTDAIMIGGSDGVTEENVDNVVEAIKERTDLP-VILFPGSPSGI---SPYADAVFFPSV 95 (240)
T ss_pred cCCCEEEECCcccccHHHHHHHHHHHHhhcCCC-EEEecCChhcc---CccCCeEEEEEE
Confidence 456778898865433334455555555 66675 57777765443 348898888765
No 263
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=58.23 E-value=34 Score=25.46 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=11.7
Q ss_pred hHHHhcCceEEEEEecCC
Q 017085 5 FLLRGVGTKVNWITIQKP 22 (377)
Q Consensus 5 ~~L~~~G~eV~v~~~~~~ 22 (377)
..+.+.|++|++++...+
T Consensus 19 ~~~~~~g~~v~vv~~t~G 36 (128)
T PF02585_consen 19 AKLAEAGHRVVVVTLTDG 36 (128)
T ss_dssp HHHHHTT-EEEEEECE--
T ss_pred HHHHhcCCeEEEEEeccc
Confidence 456678999999995543
No 264
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=57.63 E-value=1.1e+02 Score=25.16 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=58.5
Q ss_pred EEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHH-HHHHHHhcCCCCcEEEecCcCCHH
Q 017085 180 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE-LRNYVMQKKIQDRVHFVNKTLTVA 258 (377)
Q Consensus 180 i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~-l~~~~~~~~~~~~v~~~g~~~~~~ 258 (377)
|+-.|++....=++.+++--+ .++++.+-++|.|...+++..+. ..+..++.
T Consensus 7 ~ik~GniGts~v~dlllDErA-----------dRedi~vrVvgsgaKM~Pe~veaav~~~~e~~---------------- 59 (277)
T COG1927 7 FIKCGNIGTSPVVDLLLDERA-----------DREDIEVRVVGSGAKMDPECVEAAVTEMLEEF---------------- 59 (277)
T ss_pred EEEecccchHHHHHHHHHhhc-----------ccCCceEEEeccccccChHHHHHHHHHHHHhc----------------
Confidence 444676665555555554322 34899999999986554432222 22222222
Q ss_pred HHHHhcCEEEecCCCCCCccchHHHHHHH-cCCcEEE-eCCCC--cccceecCcceeeecCC
Q 017085 259 PYLAAIDVLVQNSQAWGECFGRITIEAMA-FQLPVLG-TAAGG--TTEIVVNGTTGLLHPVG 316 (377)
Q Consensus 259 ~~~~~adv~l~ps~~~~e~~~~~~~Ea~a-~g~PvI~-s~~~~--~~e~~~~~~~g~~~~~~ 316 (377)
..|++++-|-+..-+.|.+.-|.++ +++|+|. +|.+| ..+-+++.+-|+++-..
T Consensus 60 ----~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYIivk~ 117 (277)
T COG1927 60 ----NPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYIIVKA 117 (277)
T ss_pred ----CCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEEEecC
Confidence 2344444333224556677778776 6888664 56665 33445555677776543
No 265
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=57.61 E-value=20 Score=28.12 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=26.9
Q ss_pred HHHHHH-hcCEEEecCCC--C--CCccchHHHHHHHcCCcEEEeC
Q 017085 257 VAPYLA-AIDVLVQNSQA--W--GECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 257 ~~~~~~-~adv~l~ps~~--~--~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
+..-+. .+|++++.-.. + ..|+--.+.+|++.|+||++.-
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V 130 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAV 130 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEE
Confidence 333443 38998876332 1 3345566789999999999874
No 266
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=57.40 E-value=1.8e+02 Score=29.40 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=63.8
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-CcEEEecC------------
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK------------ 253 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~g~------------ 253 (377)
+.+.|.-.+. ++-+...++-.|.+..+.++++.|.| ..---+-+++...|+. .++.+...
T Consensus 159 DD~~GTa~v~--lA~l~na~~~~~~~~~~~~iv~~GaG-----aag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~ 231 (752)
T PRK07232 159 DDQHGTAIIS--AAALLNALELVGKKIEDVKIVVSGAG-----AAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGM 231 (752)
T ss_pred cccchHHHHH--HHHHHHHHHHhCCChhhcEEEEECcc-----HHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccc
Confidence 3455654332 22233333333335578999999998 3444555566667774 45554430
Q ss_pred ------------cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 254 ------------TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 254 ------------~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
...+.+.+..+|+++-.|. ...|.--+++.|+ ..|+|-.
T Consensus 232 ~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~--~g~~~~~~v~~M~-~~piifa 282 (752)
T PRK07232 232 DEWKAAYAVDTDARTLAEAIEGADVFLGLSA--AGVLTPEMVKSMA-DNPIIFA 282 (752)
T ss_pred cHHHHHHhccCCCCCHHHHHcCCCEEEEcCC--CCCCCHHHHHHhc-cCCEEEe
Confidence 1358888999999998887 6678888999998 4888854
No 267
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=57.30 E-value=1.2e+02 Score=25.83 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=52.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC--c-----CCHHHHHHhcCEEEecCCC------CCCccc-
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--T-----LTVAPYLAAIDVLVQNSQA------WGECFG- 279 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~--~-----~~~~~~~~~adv~l~ps~~------~~e~~~- 279 (377)
++-++.++...+.....+.+...+..+++|.. .+..+.- + ++..+.+..||++++..-+ .+...+
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l 105 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVK-EVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPL 105 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCc-eeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcH
Confidence 45577777654333224566777777888874 3333332 1 3467889999988865421 112223
Q ss_pred -hHHHHHHHcCCcEEEeCCCC
Q 017085 280 -RITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 280 -~~~~Ea~a~g~PvI~s~~~~ 299 (377)
-.+-++...|+|++.+..|.
T Consensus 106 ~~~l~~~~~~G~vi~G~SAGA 126 (250)
T TIGR02069 106 LDRLRKRVHEGIILGGTSAGA 126 (250)
T ss_pred HHHHHHHHHcCCeEEEccHHH
Confidence 34558888999999887664
No 268
>PRK07283 hypothetical protein; Provisional
Probab=57.25 E-value=47 Score=23.53 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=39.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE 284 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~E 284 (377)
....++|+....+. ...+.+.+.++.++++ +......+++...+..-. .++.-. .+||.-.+++
T Consensus 33 gk~~lVi~A~Das~--~~~kk~~~~~~~~~Vp--~~~~~t~~eLG~a~Gk~~-~vvai~--d~g~a~~l~~ 96 (98)
T PRK07283 33 GQAKLVFLANDAGP--NLTKKVTDKSNYYQVE--VSTVFSTLELSAAVGKPR-KVLAVT--DAGFSKKMRS 96 (98)
T ss_pred CCccEEEEeCCCCH--HHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCCCc-eEEEEe--ChhHHHHHHH
Confidence 56788877664332 4577888888888776 333344477877777633 333333 5777766654
No 269
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=57.09 E-value=76 Score=28.01 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=52.9
Q ss_pred HHHHhcCEEEecCCCCCCccchHHHHHHHcCC-cEEE-eCCCCcccce---ecC--cceeeecCCCCChhHHHHHHHHHh
Q 017085 259 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLG-TAAGGTTEIV---VNG--TTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 259 ~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~-PvI~-s~~~~~~e~~---~~~--~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
.-++.||+++..... .|+|-..+++.+.... ++|. ++.-..-..- .+| +-....++.+ ...+++.|...+
T Consensus 77 ~~i~~ADliv~nG~~-le~w~~k~~~~~~~~~~~~i~~s~~i~~~~~~~~~~~g~~dpH~Wldp~n--a~~~v~~I~~~L 153 (303)
T COG0803 77 AKLRKADLIVYNGLG-LEPWLEKLLESADKKKVLVIEVSDGIELLPLPGEEEEGVNDPHVWLDPKN--AKIYAENIADAL 153 (303)
T ss_pred HHHHhCCEEEEcCCC-hHHHHHHHHHhcccCCceEEEccCCccccCCCCccccCCCCCCeecCHHH--HHHHHHHHHHHH
Confidence 567889999987774 6776667776665543 2332 2211111111 111 2234445555 677777777666
Q ss_pred h--CHHHHHHHHHHHHHHHHH
Q 017085 332 T--HVERRLTMGKRGYERVKE 350 (377)
Q Consensus 332 ~--~~~~~~~~~~~~~~~~~~ 350 (377)
. ||+......+|+.++..+
T Consensus 154 ~~~dP~~~~~y~~N~~~y~~k 174 (303)
T COG0803 154 VELDPENKETYEKNAEAYLKK 174 (303)
T ss_pred HHhCcccHHHHHHHHHHHHHH
Confidence 5 888888888888876654
No 270
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=56.71 E-value=1.1e+02 Score=26.28 Aligned_cols=87 Identities=22% Similarity=0.270 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-CcEEEecCcCCHHHHHHhcCEEEecCCC
Q 017085 195 FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKTLTVAPYLAAIDVLVQNSQA 273 (377)
Q Consensus 195 ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~g~~~~~~~~~~~adv~l~ps~~ 273 (377)
+++++..+.+.+.+ +.+-+.+++...+.+ +..-++.+.++.+||+ .+..|.+. +....|+.+-++-|+-|.
T Consensus 19 ~vk~Ll~lN~~~~~---e~~~VEVVllSRNsp---dTGlRv~nSI~hygL~ItR~~ft~G-~~~~~Yl~af~v~LFLSa- 90 (264)
T PF06189_consen 19 FVKALLALNDLLPE---EDPLVEVVLLSRNSP---DTGLRVFNSIRHYGLDITRAAFTGG-ESPYPYLKAFNVDLFLSA- 90 (264)
T ss_pred HHHHHHHhhccccc---cCCceEEEEEecCCH---HHHHHHHHhHHHhCCcceeeeecCC-CCHHHHHHHhCCceEeeC-
Confidence 66666655544432 126788888888754 3456788888888875 34566665 577889988766555555
Q ss_pred CCCccchHHHHHHHcCCcEE
Q 017085 274 WGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 274 ~~e~~~~~~~Ea~a~g~PvI 293 (377)
-.--+-+|+.+|.|--
T Consensus 91 ----n~~DV~~Ai~~G~~Aa 106 (264)
T PF06189_consen 91 ----NEDDVQEAIDAGIPAA 106 (264)
T ss_pred ----CHHHHHHHHHcCCCcE
Confidence 2456889999998854
No 271
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=56.51 E-value=1.3e+02 Score=26.87 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 232 ESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 232 ~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++.+..+++++.+ -...++.++++. .|+++..+. ...-.-.+..|+..|++|++-.
T Consensus 40 ~~~a~~~a~~~~~~------~~~~~~~~ll~~~~iD~V~Iatp--~~~H~e~~~~AL~aGkhVl~EK 98 (342)
T COG0673 40 PERAEAFAEEFGIA------KAYTDLEELLADPDIDAVYIATP--NALHAELALAALEAGKHVLCEK 98 (342)
T ss_pred HHHHHHHHHHcCCC------cccCCHHHHhcCCCCCEEEEcCC--ChhhHHHHHHHHhcCCEEEEcC
Confidence 46678888888765 112577788876 478887765 3333345589999999999864
No 272
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=55.90 E-value=12 Score=31.71 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=16.7
Q ss_pred HhhHHHhcCceEEEEEecCCC
Q 017085 3 LAFLLRGVGTKVNWITIQKPS 23 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~ 23 (377)
|+++|+ .++||+|+++..+.
T Consensus 19 L~~al~-~~~dV~VVAP~~~q 38 (252)
T COG0496 19 LARALR-EGADVTVVAPDREQ 38 (252)
T ss_pred HHHHHh-hCCCEEEEccCCCC
Confidence 678888 89999999987653
No 273
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=55.66 E-value=98 Score=24.18 Aligned_cols=90 Identities=16% Similarity=0.109 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec-Cc----------CCHHHHH
Q 017085 193 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-KT----------LTVAPYL 261 (377)
Q Consensus 193 ~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g-~~----------~~~~~~~ 261 (377)
..++.+..++.+.. ...+..+++|+.. ...+.+++.+..+|.. +|.... .. .-+.+++
T Consensus 18 ~e~l~~A~~La~~~------g~~v~av~~G~~~----~~~~~l~~~l~~~G~d-~v~~~~~~~~~~~~~~~~a~~l~~~~ 86 (164)
T PF01012_consen 18 LEALEAARRLAEAL------GGEVTAVVLGPAE----EAAEALRKALAKYGAD-KVYHIDDPALAEYDPEAYADALAELI 86 (164)
T ss_dssp HHHHHHHHHHHHCT------TSEEEEEEEETCC----CHHHHHHHHHHSTTES-EEEEEE-GGGTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc------CCeEEEEEEecch----hhHHHHhhhhhhcCCc-EEEEecCccccccCHHHHHHHHHHHH
Confidence 34555555544311 1468888899532 3567777777778875 555553 21 2355566
Q ss_pred Hh--cCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 262 AA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 262 ~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
+. .|++++|+. ..+-.+...=|..+|.|+++-
T Consensus 87 ~~~~~~lVl~~~t--~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 87 KEEGPDLVLFGST--SFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp HHHT-SEEEEESS--HHHHHHHHHHHHHHT-EEEEE
T ss_pred HhcCCCEEEEcCc--CCCCcHHHHHHHHhCCCccce
Confidence 66 899999987 566556666788888888864
No 274
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=55.29 E-value=9 Score=36.59 Aligned_cols=19 Identities=21% Similarity=0.065 Sum_probs=16.7
Q ss_pred cHhhHHHhcCceEEEEEec
Q 017085 2 ELAFLLRGVGTKVNWITIQ 20 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~ 20 (377)
.++++|.++||+||++++.
T Consensus 40 ~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 40 VYVEALAERGHNVTVIKPT 58 (507)
T ss_pred HHHHHHHHcCCeEEEEecc
Confidence 3789999999999999864
No 275
>PRK12861 malic enzyme; Reviewed
Probab=55.17 E-value=1.8e+02 Score=29.53 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=63.9
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-CcEEEec--------C----
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVN--------K---- 253 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~g--------~---- 253 (377)
+.+.|.-.+. ++-+...++-.|.+..+.++++.|.|. .---+-+++...|+. +++.+.. .
T Consensus 163 DD~qGTa~v~--lA~llnal~~~gk~l~d~~iv~~GAGa-----Ag~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l 235 (764)
T PRK12861 163 DDQHGTAITV--SAAFINGLKVVGKSIKEVKVVTSGAGA-----AALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLM 235 (764)
T ss_pred cccchHHHHH--HHHHHHHHHHhCCChhHcEEEEECHhH-----HHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccC
Confidence 4556654432 222233333333345689999999983 444455666667875 3665543 0
Q ss_pred ------------cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 254 ------------TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 254 ------------~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
...+.+.+..+|+++-.|. ...|.--++++|+- .|+|-.
T Consensus 236 ~~~k~~~a~~~~~~~L~eai~~advliG~S~--~g~ft~e~v~~Ma~-~PIIFa 286 (764)
T PRK12861 236 DPDKERFAQETDARTLAEVIGGADVFLGLSA--GGVLKAEMLKAMAA-RPLILA 286 (764)
T ss_pred CHHHHHHHhhcCCCCHHHHHhcCCEEEEcCC--CCCCCHHHHHHhcc-CCEEEE
Confidence 0357888899999998886 67788888999987 788854
No 276
>PRK10481 hypothetical protein; Provisional
Probab=54.64 E-value=94 Score=26.02 Aligned_cols=91 Identities=10% Similarity=-0.015 Sum_probs=45.5
Q ss_pred ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC-c---CCHHHHH--
Q 017085 188 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T---LTVAPYL-- 261 (377)
Q Consensus 188 ~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~-~---~~~~~~~-- 261 (377)
|.+++..++.++. ..-++-++.... +..++..+...+.|.+..+....+ . +.+.+.-
T Consensus 115 P~~~i~~lv~Al~-------------~g~riGVitP~~----~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~ 177 (224)
T PRK10481 115 PSRILPPLVAAIV-------------GGHQVGVIVPVE----EQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKE 177 (224)
T ss_pred chhhHHHHHHHhc-------------CCCeEEEEEeCH----HHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHH
Confidence 5556655555543 344666666643 223333344445566544333211 1 1232222
Q ss_pred ---HhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC
Q 017085 262 ---AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 262 ---~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
..+|++++-+. .-+..+.-.=.-..|+|||.++.
T Consensus 178 L~~~gaD~Ivl~C~--G~~~~~~~~le~~lg~PVI~~n~ 214 (224)
T PRK10481 178 LLDQGADVIVLDCL--GYHQRHRDLLQKALDVPVLLSNV 214 (224)
T ss_pred hhcCCCCEEEEeCC--CcCHHHHHHHHHHHCcCEEcHHH
Confidence 36888887665 22222222223468999998874
No 277
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=53.64 E-value=36 Score=28.62 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=35.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
.....+++|+...-..+...++.+.+++..+| .+.|.|..+.+ -..+|.+++||.
T Consensus 31 ~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lP-vilfp~~~~~i---~~~aDa~l~~sv 85 (232)
T PRK04169 31 SGTDAIIVGGSDGVTEENVDELVKAIKEYDLP-VILFPGNIEGI---SPGADAYLFPSV 85 (232)
T ss_pred cCCCEEEEcCCCccchHHHHHHHHHHhcCCCC-EEEeCCCcccc---CcCCCEEEEEEE
Confidence 45677888886533333455666667776665 56676654333 345999998875
No 278
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=53.52 E-value=1.1e+02 Score=24.07 Aligned_cols=66 Identities=5% Similarity=-0.079 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEE
Q 017085 189 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVL 267 (377)
Q Consensus 189 ~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~ 267 (377)
.-.+...++++..+.+ ..-+.-+++.|++ ....+...+++.|. .|...|.. .--.++.++||-|
T Consensus 88 ~~Dv~laIDame~~~~-------~~iD~~vLvSgD~------DF~~Lv~~lre~G~--~V~v~g~~~~ts~~L~~acd~F 152 (160)
T TIGR00288 88 DVDVRMAVEAMELIYN-------PNIDAVALVTRDA------DFLPVINKAKENGK--ETIVIGAEPGFSTALQNSADIA 152 (160)
T ss_pred cccHHHHHHHHHHhcc-------CCCCEEEEEeccH------hHHHHHHHHHHCCC--EEEEEeCCCCChHHHHHhcCeE
Confidence 4568889999875533 2246555566766 45667777777775 58888853 3445788999988
Q ss_pred Ee
Q 017085 268 VQ 269 (377)
Q Consensus 268 l~ 269 (377)
+.
T Consensus 153 I~ 154 (160)
T TIGR00288 153 II 154 (160)
T ss_pred Ee
Confidence 74
No 279
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=52.47 E-value=12 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=14.1
Q ss_pred hHHHHHHHcCCcEEEe
Q 017085 280 RITIEAMAFQLPVLGT 295 (377)
Q Consensus 280 ~~~~Ea~a~g~PvI~s 295 (377)
-.+.|++.+|.||++-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4689999999999975
No 280
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=51.86 E-value=75 Score=21.71 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=31.2
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL 261 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~ 261 (377)
...+++|+....+. ...+.+..+++..+++ +.+.+...+|....
T Consensus 23 gkakLViiA~Da~~--~~~k~i~~~c~~~~Vp--v~~~~t~~eLG~A~ 66 (82)
T PRK13601 23 CNVLQVYIAKDAEE--HVTKKIKELCEEKSIK--IVYIDTMKELGVMC 66 (82)
T ss_pred CCeeEEEEeCCCCH--HHHHHHHHHHHhCCCC--EEEeCCHHHHHHHH
Confidence 57889888775432 5788899999999887 56666555665443
No 281
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=51.39 E-value=76 Score=21.63 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHH
Q 017085 191 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY 260 (377)
Q Consensus 191 g~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (377)
|.+..++++++ ...+++|+....+. ...+.+..+++..+++ +.+.+...++...
T Consensus 15 G~~~v~kai~~------------gkaklViiA~D~~~--~~~~~i~~~c~~~~Vp--~~~~~s~~eLG~a 68 (82)
T PRK13602 15 GTKQTVKALKR------------GSVKEVVVAEDADP--RLTEKVEALANEKGVP--VSKVDSMKKLGKA 68 (82)
T ss_pred cHHHHHHHHHc------------CCeeEEEEECCCCH--HHHHHHHHHHHHcCCC--EEEECCHHHHHHH
Confidence 46666666542 57888887765433 4788889999998876 5666644555544
No 282
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.79 E-value=46 Score=30.25 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=38.3
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccc----------hhHHHhhhcccEEEEcCc
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------QETINTALKADLIVLNTA 66 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Div~~~~~ 66 (377)
||..++++|+.+-++|.+.-.... +. -+.......+++++.... -..-.+++++|+|++.+.
T Consensus 121 lA~y~kkkG~K~~LvcaDTFRagA-fD-QLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 121 LAYYYKKKGYKVALVCADTFRAGA-FD-QLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTS 192 (483)
T ss_pred HHHHHHhcCCceeEEeecccccch-HH-HHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 788999999999999966432111 00 123333445777755321 112236789999999873
No 283
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=50.77 E-value=1.4e+02 Score=25.59 Aligned_cols=63 Identities=13% Similarity=-0.018 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHH-HHcCCcEEEeCC
Q 017085 231 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA-MAFQLPVLGTAA 297 (377)
Q Consensus 231 ~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea-~a~g~PvI~s~~ 297 (377)
-.+.+++.++++|++--...... .++..+...+|++-.||. +.....++++ ...|+||+.+.-
T Consensus 77 gl~~l~~~~~~~Gl~~~t~~~d~-~~~~~l~~~~d~lkI~s~---~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 77 GLKLLRRAADEHGLPVVTEVMDP-RDVEIVAEYADILQIGAR---NMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred HHHHHHHHHHHhCCCEEEeeCCh-hhHHHHHhhCCEEEECcc---cccCHHHHHHHhcCCCcEEEeCC
Confidence 45678888999988632222222 445555566899999996 5555556655 457999999863
No 284
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.18 E-value=71 Score=24.61 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec
Q 017085 230 KFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN 306 (377)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~ 306 (377)
|..+.+.+.+.++|++ |+|.....-....-..+...+.-+- .+.--.-++|-.--|=-||+.|.|=...++..
T Consensus 12 PVk~~i~r~A~r~~~~--v~~Van~~~~~~~~~~i~~v~V~~g--~DaaD~~Iv~~a~~gDlVVT~Di~LA~~ll~k 84 (150)
T COG1671 12 PVKDEIYRVAERMGLK--VTFVANFPHRVPPSPEIRTVVVDAG--FDAADDWIVNLAEKGDLVVTADIPLASLLLDK 84 (150)
T ss_pred chHHHHHHHHHHhCCe--EEEEeCCCccCCCCCceeEEEecCC--cchHHHHHHHhCCCCCEEEECchHHHHHHHhc
Confidence 4677778888888775 6666543111011122333333232 45555667777777777888887766666643
No 285
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=50.01 E-value=47 Score=23.89 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=45.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHH--HcCCcEE
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM--AFQLPVL 293 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~--a~g~PvI 293 (377)
++++|.|.... -..+.+++.+++.|++-.+...+. .++..... .+|++++... -.|-..-++.. ..|+||.
T Consensus 5 LlvCg~G~STS-lla~k~k~~~~e~gi~~~i~a~~~-~e~~~~~~~~~~DvIll~PQ---i~~~~~~i~~~~~~~~ipv~ 79 (104)
T PRK09590 5 LIICAAGMSSS-MMAKKTTEYLKEQGKDIEVDAITA-TEGEKAIAAAEYDLYLVSPQ---TKMYFKQFEEAGAKVGKPVV 79 (104)
T ss_pred EEECCCchHHH-HHHHHHHHHHHHCCCceEEEEecH-HHHHHhhccCCCCEEEEChH---HHHHHHHHHHHhhhcCCCEE
Confidence 56777776433 467788888999988744444443 35555543 5898887643 12223334443 4789998
Q ss_pred EeC
Q 017085 294 GTA 296 (377)
Q Consensus 294 ~s~ 296 (377)
+-+
T Consensus 80 ~I~ 82 (104)
T PRK09590 80 QIP 82 (104)
T ss_pred EeC
Confidence 875
No 286
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.67 E-value=1e+02 Score=26.73 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=49.5
Q ss_pred HHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC-Ccccceec---C--cceeeecCCCCChhHHHHHHHHH
Q 017085 257 VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIVVN---G--TTGLLHPVGKEGITPLAKNIVKL 330 (377)
Q Consensus 257 ~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~-~~~e~~~~---~--~~g~~~~~~~~~~~~la~~i~~l 330 (377)
-..-++.||+++..... .|++--.++++...+.++|....+ .......+ + +--+..++.+ ...+++.|...
T Consensus 44 d~~~l~~Adliv~~G~~-~E~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~--~~~~a~~I~~~ 120 (276)
T cd01016 44 DVEKLQNADVVFYNGLH-LEGKMSDVLSKLGSSKSVIALEDTLDRSQLILDEEEGTYDPHIWFDVKL--WKYAVKAVAEV 120 (276)
T ss_pred HHHHHHhCCEEEEcCcC-hHHHHHHHHHHhccCCceEEeccCcCcccccccccCCCCCCCcccCHHH--HHHHHHHHHHH
Confidence 33567888988877653 566666777765434455543221 11111111 0 1113334444 67788888777
Q ss_pred hh--CHHHHHHHHHHHHHHHH
Q 017085 331 AT--HVERRLTMGKRGYERVK 349 (377)
Q Consensus 331 ~~--~~~~~~~~~~~~~~~~~ 349 (377)
+. ||+......+|+.++..
T Consensus 121 L~~~dP~~~~~y~~N~~~~~~ 141 (276)
T cd01016 121 LSEKLPEHKDEFQANSEAYVE 141 (276)
T ss_pred HHHHCcccHHHHHHHHHHHHH
Confidence 65 77766666666665443
No 287
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=49.20 E-value=23 Score=30.97 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHH----HhcCEEEecCCC-CCCccchHHHHHHHcCCcEEEeC
Q 017085 231 FESELRNYVMQKKIQDRVHFVNKTLTVAPYL----AAIDVLVQNSQA-WGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 231 ~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~----~~adv~l~ps~~-~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
..+.+++.++++|+.-........+++...+ ...|+++++... ....+...+..+...++|++++.
T Consensus 148 ~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 148 QIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp HHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESS
T ss_pred HHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECC
Confidence 3445555556665532222222233333333 356766665431 01122233446677899999875
No 288
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.03 E-value=1.8e+02 Score=25.34 Aligned_cols=172 Identities=12% Similarity=0.110 Sum_probs=89.5
Q ss_pred HHHHHHHhCCCCCC-eEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhc
Q 017085 164 REHVRESLGVRNED-LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 242 (377)
Q Consensus 164 ~~~~r~~~~~~~~~-~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~ 242 (377)
...+++++|+++.- ..+..+| -+.-.....|+.+++. ...+.+++.++- ..+.+.+.....
T Consensus 164 ~~~l~~rlgv~ek~~~~~slFa--Y~npa~~s~ieq~r~a----------~~p~llL~~e~~------~~~~~~~~~~~~ 225 (370)
T COG4394 164 AEYLLERLGVNEKYDLIASLFA--YENPALPSWIEQLRKA----------DKPILLLIPEGK------TQANFAKYFDNN 225 (370)
T ss_pred HHHHHHHcCCchhhchhhhhhc--cCCcchHHHHHHHHhc----------CCCEEEEcccch------HHHHHHHHcCCC
Confidence 35788899987532 2222222 1223667777766543 134555555542 233333322111
Q ss_pred CC---------CCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC--cc------cc
Q 017085 243 KI---------QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG--TT------EI 303 (377)
Q Consensus 243 ~~---------~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~--~~------e~ 303 (377)
.. +-+|..++++ ++..+++..||+-+.-.. . +.+-|..+|+|.+=--.+- .. .+
T Consensus 226 ~~a~Gdv~~~~~lrvvklPFvpqddyd~LL~lcD~n~VRGE----D---SFVRAq~agkPflWHIYpQdentHl~KLeaF 298 (370)
T COG4394 226 NNADGDVFQTAKLRVVKLPFVPQDDYDELLWLCDFNLVRGE----D---SFVRAQLAGKPFLWHIYPQDENTHLAKLEAF 298 (370)
T ss_pred cccccchhcccceEEEEecCCcHhHHHHHHHhcccceeecc----h---HHHHHHHcCCCcEEEecCCccccHHHHHHHH
Confidence 11 1135555654 889999999999886543 2 6789999999998542221 11 11
Q ss_pred eecCcceeeecCCCCChhHHHHHHHHHhhCH-------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017085 304 VVNGTTGLLHPVGKEGITPLAKNIVKLATHV-------------ERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 368 (377)
Q Consensus 304 ~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~-------------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 368 (377)
+ +.-++++ +.+.++++.....+- ....+..+.+.+.....+-.-..++++.++++..
T Consensus 299 l-dky~~~l-------p~~~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek~ 368 (370)
T COG4394 299 L-DKYCPFL-------PPNTAKALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEKI 368 (370)
T ss_pred H-HHhCCCC-------CHHHHHHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHHh
Confidence 1 1112222 345566665554321 1123344445455545555556666777766653
No 289
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=48.74 E-value=89 Score=27.15 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=52.2
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHHHHHc-CCcEEEeCCCCcccce------------e--cC--cceeeecCCCCCh
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEIV------------V--NG--TTGLLHPVGKEGI 320 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~-g~PvI~s~~~~~~e~~------------~--~~--~~g~~~~~~~~~~ 320 (377)
..-++.||+++..... .|++-..++++... +.++|.. ..++.-+- . ++ +--+..++.+ .
T Consensus 47 ~~~l~~Adliv~~G~~-~e~w~~k~~~~~~~~~~~~v~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~--~ 122 (282)
T cd01017 47 IARIADADVFVYNGLG-METWAEKVLKSLQNKKLKVVEA-SKGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVL--A 122 (282)
T ss_pred HHHHHhCCEEEEcCcc-hHHHHHHHHHhcccCCceEEEC-CCCccccccccccccccccccccCCCCCCccccCHHH--H
Confidence 3567888888876543 56666667766532 2344432 11211110 0 00 1113344444 6
Q ss_pred hHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 321 TPLAKNIVKLAT--HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 321 ~~la~~i~~l~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
..++++|...+. +|+......+|+.++..+ ++..-+++.+.+.
T Consensus 123 ~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~~~ 167 (282)
T cd01017 123 IQQVENIKDALIKLDPDNKEYYEKNAAAYAKK---LEALDQEYRAKLA 167 (282)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 777777777665 777666666666665433 4444444444333
No 290
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=48.44 E-value=1.9e+02 Score=25.79 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=44.2
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC--------------cCCHHHHHHhcCEEE--ecCCCCCCcc
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--------------TLTVAPYLAAIDVLV--QNSQAWGECF 278 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~--------------~~~~~~~~~~adv~l--~ps~~~~e~~ 278 (377)
+-++-|+|-| ..-..+.+.++.+|+. |....+ .+++.++++.||+++ .|.. .|+-
T Consensus 142 gkTvGIiG~G-----~IG~~va~~l~afgm~--v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT--~eT~ 212 (324)
T COG0111 142 GKTVGIIGLG-----RIGRAVAKRLKAFGMK--VIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLT--PETR 212 (324)
T ss_pred CCEEEEECCC-----HHHHHHHHHHHhCCCe--EEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCC--cchh
Confidence 4577788877 5667777777777763 554443 145999999999977 4666 6766
Q ss_pred chH---HHHHHHcCC
Q 017085 279 GRI---TIEAMAFQL 290 (377)
Q Consensus 279 ~~~---~~Ea~a~g~ 290 (377)
++. .+..|--|.
T Consensus 213 g~i~~~~~a~MK~ga 227 (324)
T COG0111 213 GLINAEELAKMKPGA 227 (324)
T ss_pred cccCHHHHhhCCCCe
Confidence 654 344444444
No 291
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=48.40 E-value=2.1e+02 Score=26.19 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=65.6
Q ss_pred eEEEEecccc--ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-
Q 017085 178 LLFAIINSVS--RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 254 (377)
Q Consensus 178 ~~i~~~G~~~--~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~- 254 (377)
++.+....+. ...|.+..++++.+....-.+.. ....-.+.|+|...... ....+++++.+.+|+..+..+.+..
T Consensus 114 vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~~~~~-~~~~~~vNlig~~~~~~-~d~~el~~ll~~~G~~v~~~~~~~~s 191 (399)
T cd00316 114 VVPASTPGFRGSQSAGYDAAVKAIIDHLVGTAEPE-ETEPGSVNLIGGYNLGG-GDLRELKRLLEEMGIRVNALFDGGTT 191 (399)
T ss_pred eEEeeCCCCcccHHHHHHHHHHHHHHHHhcccCcC-CCCCCcEEEECCCCCch-hhHHHHHHHHHHcCCcEEEEcCCCCC
Confidence 3333344443 34688888887775432100000 11345688899865432 2568899999999998666665522
Q ss_pred -CCHHHHHHhcCEEEecCCCCCCccchHHHHHHH--cCCcEEEeC
Q 017085 255 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--FQLPVLGTA 296 (377)
Q Consensus 255 -~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a--~g~PvI~s~ 296 (377)
+++.. +..|.+.+..+. . ++..+.|.|. +|+|.+...
T Consensus 192 ~~~i~~-~~~A~~nlv~~~--~--~g~~~a~~l~~~~g~p~~~~~ 231 (399)
T cd00316 192 VEELRE-LGNAKLNLVLCR--E--SGLYLARYLEEKYGIPYILIN 231 (399)
T ss_pred HHHHHh-hccCcEEEEecH--h--HHHHHHHHHHHHhCCCeEEeC
Confidence 55544 345555554432 1 3566677774 899988875
No 292
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=47.41 E-value=57 Score=26.35 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=42.6
Q ss_pred CeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--
Q 017085 177 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 254 (377)
Q Consensus 177 ~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-- 254 (377)
..+.+...+..+-.-...+++ .|++ ++|+.++++...... -.+...+.... ...+.+++.-
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~-------~l~~---~~p~~~illT~~T~t----g~~~~~~~~~~---~v~~~~~P~D~~ 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIK-------RLRK---QRPDLRILLTTTTPT----GREMARKLLPD---RVDVQYLPLDFP 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHH-------HHTT------TS-EEEEES-CC----HHHHHHGG-GG---G-SEEE---SSH
T ss_pred CcEEEEECCHHHHHHHHHHHH-------HHHH---hCCCCeEEEEecCCc----hHHHHHHhCCC---CeEEEEeCccCH
Confidence 455556555554333333333 3333 458999998877532 22333333221 1234554431
Q ss_pred CCHHHHHHhc--CEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 255 LTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 255 ~~~~~~~~~a--dv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
..+..+++.- |++++-- .|-+|+-+.++-..|+|++.-+
T Consensus 85 ~~~~rfl~~~~P~~~i~~E---tElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 85 WAVRRFLDHWRPDLLIWVE---TELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp HHHHHHHHHH--SEEEEES-------HHHHHH-----S-EEEEE
T ss_pred HHHHHHHHHhCCCEEEEEc---cccCHHHHHHHhhcCCCEEEEe
Confidence 2345556554 7777654 6889999999999999999765
No 293
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=47.28 E-value=52 Score=28.18 Aligned_cols=62 Identities=26% Similarity=0.388 Sum_probs=39.2
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccch------hHHHh------hhcccEEEEcCch
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------ETINT------ALKADLIVLNTAV 67 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~------~~~~Div~~~~~~ 67 (377)
.|++.|+..|.+|.+.+++..+..+... ..+...|+.++..+.. +.+.+ ..+||+|+=.+..
T Consensus 58 ~L~~tL~a~GAeV~~~~sNplSTQDdva----AAL~~~Gi~V~A~~get~eey~~~i~~~L~~~~~~~P~~iiDDG~D 131 (268)
T PF05221_consen 58 VLAETLKALGAEVRWTGSNPLSTQDDVA----AALAEEGIPVFAWKGETDEEYWWCIEKALSWEDDHGPNLIIDDGGD 131 (268)
T ss_dssp HHHHHHHHTTEEEEEEESSTTT--HHHH----HHHHHTTEEEEE-TT--HHHHHHHHHHCHSESTTCE-SEEEESSSH
T ss_pred HHHHHHHHcCCeEEEecCCCcccchHHH----HHhccCCceEEEeCCCCHHHHHHHHHHHhcCCCCCCcceeecchHH
Confidence 3789999999999999988766655444 3344679999875522 11111 2468888876544
No 294
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.75 E-value=1.4e+02 Score=25.76 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=28.9
Q ss_pred ecCCCCChhHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 313 HPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 313 ~~~~~~~~~~la~~i~~l~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
.++.+ ...++++|...|. +|+......+|+.++..+ .+...+++.+.+.
T Consensus 116 ldp~~--~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~~~ 166 (266)
T cd01018 116 LSPAN--AKIMAENIYEALAELDPQNATYYQANLDALLAE---LDALDSEIRTILS 166 (266)
T ss_pred cCHHH--HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 34444 6777888877665 777766777777665543 3444444444333
No 295
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=46.21 E-value=46 Score=31.39 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=31.9
Q ss_pred CcHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHH----hhhcccEEEEc
Q 017085 1 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN----TALKADLIVLN 64 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Div~~~ 64 (377)
+.||+++..+|++|++++..... . ...+++++......... ...+.|++++.
T Consensus 286 ~alA~aa~~~GA~VtlI~Gp~~~---------~---~p~~v~~i~V~ta~eM~~av~~~~~~Di~I~a 341 (475)
T PRK13982 286 FAIAAAAAAAGAEVTLISGPVDL---------A---DPQGVKVIHVESARQMLAAVEAALPADIAIFA 341 (475)
T ss_pred HHHHHHHHHCCCcEEEEeCCcCC---------C---CCCCceEEEecCHHHHHHHHHhhCCCCEEEEe
Confidence 35899999999999999854321 0 12456666655443332 33346777654
No 296
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=46.17 E-value=1.8e+02 Score=25.82 Aligned_cols=77 Identities=10% Similarity=0.144 Sum_probs=50.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC----------cCCHHHHHHhcCEEEe--cCCCCCCc---c
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK----------TLTVAPYLAAIDVLVQ--NSQAWGEC---F 278 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~----------~~~~~~~~~~adv~l~--ps~~~~e~---~ 278 (377)
.+-++-|+|-| .--..+.+.++.+|. +|..... ..++.++++.||++++ |.. .++ +
T Consensus 144 ~gktvGIiG~G-----~IG~~vA~~~~~fgm--~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt--~~T~~li 214 (311)
T PRK08410 144 KGKKWGIIGLG-----TIGKRVAKIAQAFGA--KVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLN--EKTKNLI 214 (311)
T ss_pred CCCEEEEECCC-----HHHHHHHHHHhhcCC--EEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCC--chhhccc
Confidence 45677788887 456677777777765 4554432 1368899999998774 544 444 5
Q ss_pred chHHHHHHHcCCcEEEeCCCC
Q 017085 279 GRITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 279 ~~~~~Ea~a~g~PvI~s~~~~ 299 (377)
+-..++.|--|.-+|-+.-|+
T Consensus 215 ~~~~~~~Mk~~a~lIN~aRG~ 235 (311)
T PRK08410 215 AYKELKLLKDGAILINVGRGG 235 (311)
T ss_pred CHHHHHhCCCCeEEEECCCcc
Confidence 566777777776666554443
No 297
>PLN02928 oxidoreductase family protein
Probab=46.16 E-value=1.6e+02 Score=26.59 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=26.9
Q ss_pred CCHHHHHHhcCEEEe--cCCCCCCc---cchHHHHHHHcCCcEEEeCCC
Q 017085 255 LTVAPYLAAIDVLVQ--NSQAWGEC---FGRITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 255 ~~~~~~~~~adv~l~--ps~~~~e~---~~~~~~Ea~a~g~PvI~s~~~ 298 (377)
.++.++++.||++++ |.. .++ ++-..+..|--|.-+|-+.-|
T Consensus 218 ~~L~ell~~aDiVvl~lPlt--~~T~~li~~~~l~~Mk~ga~lINvaRG 264 (347)
T PLN02928 218 EDIYEFAGEADIVVLCCTLT--KETAGIVNDEFLSSMKKGALLVNIARG 264 (347)
T ss_pred cCHHHHHhhCCEEEECCCCC--hHhhcccCHHHHhcCCCCeEEEECCCc
Confidence 578899999999875 443 343 344566666666655554434
No 298
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=45.95 E-value=32 Score=23.73 Aligned_cols=52 Identities=19% Similarity=0.119 Sum_probs=32.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEE-Ec-------cchhHHHhhhcccEEEEcC
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI-SA-------KGQETINTALKADLIVLNT 65 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~Div~~~~ 65 (377)
++++.|.+.||++. .|... ...++..|+.+- .. ......++..++|+|+...
T Consensus 4 ~~~~~l~~lG~~i~-AT~gT-----------a~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 4 ELAKRLAELGFELV-ATGGT-----------AKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHHHHCCCEEE-EccHH-----------HHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECC
Confidence 57899999999984 33222 123344566541 11 1245666778999998864
No 299
>PLN02929 NADH kinase
Probab=45.43 E-value=1.2e+02 Score=26.77 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=42.1
Q ss_pred HHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCc---------ccceecCcceeeecCCCCChhHHHHHHHH
Q 017085 259 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT---------TEIVVNGTTGLLHPVGKEGITPLAKNIVK 329 (377)
Q Consensus 259 ~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~---------~e~~~~~~~g~~~~~~~~~~~~la~~i~~ 329 (377)
.....+|+++.-. .+|.=+...-.+-.++||++-+.|.. .++-..+..|+++... ++++.++|.+
T Consensus 60 ~~~~~~Dlvi~lG---GDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~---~~~~~~~L~~ 133 (301)
T PLN02929 60 QPIRDVDLVVAVG---GDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT---AEDFEQVLDD 133 (301)
T ss_pred cccCCCCEEEEEC---CcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccccCccccccCC---HHHHHHHHHH
Confidence 3445678877533 33322222233445789999887631 1211223579998865 7889999999
Q ss_pred HhhC
Q 017085 330 LATH 333 (377)
Q Consensus 330 l~~~ 333 (377)
+++.
T Consensus 134 il~g 137 (301)
T PLN02929 134 VLFG 137 (301)
T ss_pred HHcC
Confidence 8864
No 300
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=45.35 E-value=1.5e+02 Score=23.48 Aligned_cols=88 Identities=11% Similarity=0.079 Sum_probs=55.0
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
.++..++++|-..=.-=....+.-+.++.+.|.+. ..+++++.+.-.+..+ -.+.+++.++.++. +..-+.|..
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~---~~~v~~v~ISvDP~~D--Tp~~L~~Y~~~~~~-~~~~ltg~~ 124 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE---GKDVQFVFISVDPERD--TPEVLKKYAKKFGP-DFIGLTGSR 124 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT---TTTEEEEEEESSTTTC---HHHHHHHHHCHTT-TCEEEEEEH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc---cCceEEEEEEeCCCCC--CHHHHHHHHHhcCC-CcceeEeCH
Confidence 56777777775422222344556667777777764 2679999888765432 35778888888774 345666666
Q ss_pred CCHHHHHHhcCEEE
Q 017085 255 LTVAPYLAAIDVLV 268 (377)
Q Consensus 255 ~~~~~~~~~adv~l 268 (377)
+++.++.+...+..
T Consensus 125 ~~i~~l~~~~~v~~ 138 (174)
T PF02630_consen 125 EEIEELAKQFGVYY 138 (174)
T ss_dssp HHHHHHHHHCTHCE
T ss_pred HHHHHHHHHHHhhh
Confidence 66777766655543
No 301
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=45.20 E-value=1.6e+02 Score=25.68 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.9
Q ss_pred cHhhHHHhcCceEEEEEec
Q 017085 2 ELAFLLRGVGTKVNWITIQ 20 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~ 20 (377)
++++.|.++|++|.++...
T Consensus 15 ~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 15 ELIRKLEELDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHCCCEEEEEecc
Confidence 5899999999999999865
No 302
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=44.58 E-value=1.2e+02 Score=22.12 Aligned_cols=64 Identities=11% Similarity=-0.042 Sum_probs=31.0
Q ss_pred hhHHHhcCceEEEEEecC-CCcchhHhhhhhhhhcccCceEEEcc------------chh-HHHhhhcccEEEEcCch
Q 017085 4 AFLLRGVGTKVNWITIQK-PSEEDEVIYSLEHKMWDRGVQVISAK------------GQE-TINTALKADLIVLNTAV 67 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~Div~~~~~~ 67 (377)
...|++.|++..|--... +.+...............|+.++..+ .+. .+....+|=++||.++.
T Consensus 20 ~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~ 97 (110)
T PF04273_consen 20 LAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGT 97 (110)
T ss_dssp HHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSH
T ss_pred HHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCCh
Confidence 357888999977665322 22222222234556667788775533 112 22234678888888866
No 303
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=44.45 E-value=1.4e+02 Score=22.75 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=42.5
Q ss_pred CCeEEEEEecCCCc-ccHHHHHHHHHHHhcCCCCcEEEecC-c----C---CHHHHHHhc---CEEEecCCCCCCccchH
Q 017085 214 PSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDRVHFVNK-T----L---TVAPYLAAI---DVLVQNSQAWGECFGRI 281 (377)
Q Consensus 214 ~~~~l~i~G~~~~~-~~~~~~~l~~~~~~~~~~~~v~~~g~-~----~---~~~~~~~~a---dv~l~ps~~~~e~~~~~ 281 (377)
+.-.+++.|+.... ...+.+.+++.+.+.|++..-++... . + ....++... +++|.+|. -..+..
T Consensus 34 ~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~i~lVTs~---~H~~Ra 110 (150)
T cd06259 34 PAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYENARFSAELLRERGIRSVLLVTSA---YHMPRA 110 (150)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHHHhcCCCeEEEECCH---HHHHHH
Confidence 55566666664332 22356677777888887654444443 2 2 244556555 57777663 455666
Q ss_pred HHHHHHcCC
Q 017085 282 TIEAMAFQL 290 (377)
Q Consensus 282 ~~Ea~a~g~ 290 (377)
...+-.++.
T Consensus 111 ~~~~~~~~~ 119 (150)
T cd06259 111 LLIFRKAGL 119 (150)
T ss_pred HHHHHHcCC
Confidence 666666665
No 304
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=44.15 E-value=33 Score=24.06 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=34.1
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
++++|.|....--....+++.+++.|++-.|.-. ...++..+...+|+++.+..
T Consensus 6 LvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~-~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 6 IVACGGAVATSTMAAEEIKELCQSHNIPVELIQC-RVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred EEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEe-cHHHHhhhcCCCCEEEECCc
Confidence 5677877533322357788888888886444432 22456666678898876654
No 305
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=44.03 E-value=71 Score=26.99 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=13.6
Q ss_pred hHHHhcCceEEEEEecCC
Q 017085 5 FLLRGVGTKVNWITIQKP 22 (377)
Q Consensus 5 ~~L~~~G~eV~v~~~~~~ 22 (377)
..+.++|++|+++|...+
T Consensus 32 a~~~~~G~~V~v~~lT~G 49 (237)
T COG2120 32 AKLAARGVEVTVVCLTLG 49 (237)
T ss_pred HHHHHCCCeEEEEEccCC
Confidence 345678999999995544
No 306
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=43.78 E-value=89 Score=26.47 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhc
Q 017085 196 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 264 (377)
Q Consensus 196 l~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 264 (377)
...|+.+.++.. .|+++++.+|+|.+ . ++.++.+++| +.-++...++..++.+-
T Consensus 216 ~~cFe~I~~Rfg-----~p~~~f~~IGDG~e-----E---e~aAk~l~wP--Fw~I~~h~Dl~~l~~aL 269 (274)
T TIGR01658 216 LQCFKWIKERFG-----HPKVRFCAIGDGWE-----E---CTAAQAMNWP--FVKIDLHPDSSHRFPGL 269 (274)
T ss_pred HHHHHHHHHHhC-----CCCceEEEeCCChh-----H---HHHHHhcCCC--eEEeecCCCHHHhCccC
Confidence 345666655553 37899999999942 2 2445666665 33334445665555443
No 307
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.71 E-value=2.1e+02 Score=24.48 Aligned_cols=101 Identities=7% Similarity=-0.022 Sum_probs=63.8
Q ss_pred eccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc---------ccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 183 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 183 ~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~---------~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
.|- +.-..-+.+++.++.+.+ -++.++.-|.-.+. ..+-.+.+.+..+++|++--.....
T Consensus 20 aGP-C~vEs~e~~~~~a~~~~~---------~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d- 88 (250)
T PRK13397 20 VGP-CSIESYDHIRLAASSAKK---------LGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMS- 88 (250)
T ss_pred ecc-CccCCHHHHHHHHHHHHH---------cCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCC-
Confidence 354 334556778888776543 45676666653321 1124577888888998862222222
Q ss_pred cCCHHHHHHhcCEEEecCCCCCCccchHHHHHH-HcCCcEEEeCC
Q 017085 254 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 297 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~-a~g~PvI~s~~ 297 (377)
..++..+...+|++-.||. +.....+++++ ..|+||+.+.-
T Consensus 89 ~~~v~~~~e~vdilqIgs~---~~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 89 ERQLEEAYDYLDVIQVGAR---NMQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHhcCCEEEECcc---cccCHHHHHHHHccCCeEEEeCC
Confidence 2455555567999999996 55556677666 67999998864
No 308
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=42.99 E-value=1.5e+02 Score=26.65 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=26.7
Q ss_pred CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 256 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
+..+++..+|+++..+- .+..--..-.+..+|++||.+.
T Consensus 71 ~~~el~~~vDVVIdaT~--~~~~~e~a~~~~~aGk~VI~~~ 109 (341)
T PRK04207 71 TIEDLLEKADIVVDATP--GGVGAKNKELYEKAGVKAIFQG 109 (341)
T ss_pred ChhHhhccCCEEEECCC--chhhHHHHHHHHHCCCEEEEcC
Confidence 45566678999998765 3433334446778899988775
No 309
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=42.92 E-value=1.7e+02 Score=23.27 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=25.5
Q ss_pred CCHHHHHHhcCEEEe--cCCCCCCc---cchHHHHHHHcCCcEEEeC
Q 017085 255 LTVAPYLAAIDVLVQ--NSQAWGEC---FGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 255 ~~~~~~~~~adv~l~--ps~~~~e~---~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++.++++.||++++ |.. .++ ++-..++.|--|.-+|-+.
T Consensus 83 ~~l~ell~~aDiv~~~~plt--~~T~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLT--PETRGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSS--TTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred eehhhhcchhhhhhhhhccc--cccceeeeeeeeeccccceEEEecc
Confidence 578899999999774 544 333 4555666666666555443
No 310
>PRK04531 acetylglutamate kinase; Provisional
Probab=42.89 E-value=1.9e+02 Score=26.81 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=30.6
Q ss_pred CCCeEEEEe-ccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEE-ecCCCcccHHHHHHHHHHHhcCCCCc
Q 017085 175 NEDLLFAII-NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDR 247 (377)
Q Consensus 175 ~~~~~i~~~-G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~-G~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (377)
+.++.++-+ |..-. ...+.+++.++.+.+ -+.++++| |+| .++.+..++.|++..
T Consensus 35 ~~~~~VIKiGG~~l~-~~~~~l~~dla~L~~---------~G~~~VlVHGgg--------pqI~~~l~~~gie~~ 91 (398)
T PRK04531 35 AERFAVIKVGGAVLR-DDLEALASSLSFLQE---------VGLTPIVVHGAG--------PQLDAELDAAGIEKE 91 (398)
T ss_pred CCcEEEEEEChHHhh-cCHHHHHHHHHHHHH---------CCCcEEEEECCC--------HHHHHHHHHcCCCcE
Confidence 345444444 44432 345666666665433 45666655 555 456677778888643
No 311
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=42.86 E-value=2e+02 Score=26.03 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=58.1
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc----CCHHHHHHh----cCEEEecCCCCCCccchHHHH
Q 017085 213 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAA----IDVLVQNSQAWGECFGRITIE 284 (377)
Q Consensus 213 ~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~----~~~~~~~~~----adv~l~ps~~~~e~~~~~~~E 284 (377)
.|+-++++.|-|.+...+........+.+.++. |+.++... .-+..++.. -|-|+.|.+- .--.|....+
T Consensus 134 nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~-Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHV-s~I~G~~~y~ 211 (369)
T TIGR00075 134 NPDRKVVFFAIGFETTAPTTASTLLSAKAEDIN-NFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHV-STIIGAKPYA 211 (369)
T ss_pred CCCCeEEEEecCchhccHHHHHHHHHHHHcCCC-cEEEEEeccccHHHHHHHHcCCCCCccEEEecCEE-EEEeccchhH
Confidence 388888999888776656666666667777774 67766643 345555544 4789999873 4456667777
Q ss_pred HHH--cCCcEEEeCCC
Q 017085 285 AMA--FQLPVLGTAAG 298 (377)
Q Consensus 285 a~a--~g~PvI~s~~~ 298 (377)
.++ +++|+|++...
T Consensus 212 ~l~~~y~~P~VVaGFE 227 (369)
T TIGR00075 212 PIAEKYKIPIVIAGFE 227 (369)
T ss_pred HHHHHcCCCeEEeccC
Confidence 665 68999998543
No 312
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=42.40 E-value=2.4e+02 Score=25.42 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=53.2
Q ss_pred CeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCC-CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcC
Q 017085 177 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP-SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 255 (377)
Q Consensus 177 ~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~-~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~ 255 (377)
++.++.+|. . . | ...++++..+ + +++++-+-+. ..++.++.++++|++ . ..
T Consensus 3 ~~rVgViG~-~-~-G-~~h~~al~~~-----------~~~~eLvaV~d~------~~erA~~~A~~~gi~----~---y~ 54 (343)
T TIGR01761 3 VQSVVVCGT-R-F-G-QFYLAAFAAA-----------PERFELAGILAQ------GSERSRALAHRLGVP----L---YC 54 (343)
T ss_pred CcEEEEEeH-H-H-H-HHHHHHHHhC-----------CCCcEEEEEEcC------CHHHHHHHHHHhCCC----c---cC
Confidence 356777775 2 1 3 2355555432 4 6777655553 246667788888753 1 14
Q ss_pred CHHHHHHhcCEE--EecCCCCCCcc-chHHHHHHHcCCcEEEeC
Q 017085 256 TVAPYLAAIDVL--VQNSQAWGECF-GRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 256 ~~~~~~~~adv~--l~ps~~~~e~~-~~~~~Ea~a~g~PvI~s~ 296 (377)
++.+++...|+. ..|+.. ..+. .-...+|+..|+.|++-.
T Consensus 55 ~~eell~d~Di~~V~ipt~~-P~~~H~e~a~~aL~aGkHVL~EK 97 (343)
T TIGR01761 55 EVEELPDDIDIACVVVRSAI-VGGQGSALARALLARGIHVLQEH 97 (343)
T ss_pred CHHHHhcCCCEEEEEeCCCC-CCccHHHHHHHHHhCCCeEEEcC
Confidence 666777665654 444320 1122 345668999999999875
No 313
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.31 E-value=3.2e+02 Score=26.28 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=51.1
Q ss_pred CeEEEEEecCCCc--ccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHH--Hc
Q 017085 215 SVHAVIIGSDMNA--QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM--AF 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~--~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~--a~ 288 (377)
.-.+.|+|....+ .+....+++++++.+|++.++.|.+.. +++.. +..|++-+.++. . .|..+.+.| -+
T Consensus 158 ~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~-l~~A~~NIv~~~--~--~g~~~A~~Le~~f 232 (511)
T TIGR01278 158 KPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLAR-LPAAWLNICPYR--E--IGLMAAEYLKEKF 232 (511)
T ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-cccCcEEEEech--H--HHHHHHHHHHHHh
Confidence 3457788874311 223567899999999998887877642 55544 467777777664 2 456667777 67
Q ss_pred CCcEEEe
Q 017085 289 QLPVLGT 295 (377)
Q Consensus 289 g~PvI~s 295 (377)
|+|.+..
T Consensus 233 GiP~i~~ 239 (511)
T TIGR01278 233 GQPYITT 239 (511)
T ss_pred CCCcccc
Confidence 9998753
No 314
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=42.28 E-value=2.7e+02 Score=25.53 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=55.3
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcE-EEecC
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV-HFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v-~~~g~ 253 (377)
++.+.+..+. -.++.+.+.+..++. +.+.+.+++. .....++...... .+ .+.|.
T Consensus 25 p~~f~VvaLa---a~~n~~~l~~q~~~f------------~p~~v~i~~~-----~~~~~l~~~l~~~----~~~v~~G~ 80 (385)
T PRK05447 25 PDRFRVVALS---AGKNVELLAEQAREF------------RPKYVVVADE-----EAAKELKEALAAA----GIEVLAGE 80 (385)
T ss_pred ccccEEEEEE---cCCCHHHHHHHHHHh------------CCCEEEEcCH-----HHHHHHHHhhccC----CceEEECh
Confidence 3445444332 357778777766543 2355566664 3445555543211 23 44453
Q ss_pred cCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 254 TLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 254 ~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
+.+.++.+. +|+++.... ....--..++|+..|++|...+
T Consensus 81 -~~~~~l~~~~~vD~Vv~Ai~--G~aGl~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 81 -EGLCELAALPEADVVVAAIV--GAAGLLPTLAAIRAGKRIALAN 122 (385)
T ss_pred -hHHHHHhcCCCCCEEEEeCc--CcccHHHHHHHHHCCCcEEEeC
Confidence 567777764 588887665 3222256889999999999865
No 315
>PRK06487 glycerate dehydrogenase; Provisional
Probab=42.24 E-value=1.9e+02 Score=25.65 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC--------cCCHHHHHHhcCEEEe--cCCCCCCc---cch
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--------TLTVAPYLAAIDVLVQ--NSQAWGEC---FGR 280 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~--------~~~~~~~~~~adv~l~--ps~~~~e~---~~~ 280 (377)
.+-++-|+|-| .--..+.+.++.+|. +|..... ..++.++++.||++++ |.. .++ ++-
T Consensus 147 ~gktvgIiG~G-----~IG~~vA~~l~~fgm--~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt--~~T~~li~~ 217 (317)
T PRK06487 147 EGKTLGLLGHG-----ELGGAVARLAEAFGM--RVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLT--EHTRHLIGA 217 (317)
T ss_pred CCCEEEEECCC-----HHHHHHHHHHhhCCC--EEEEECCCCCcccccccCHHHHHHhCCEEEECCCCC--hHHhcCcCH
Confidence 35577888887 456677777777765 3544432 1358899999999874 544 444 556
Q ss_pred HHHHHHHcCCcEEEeCCCC
Q 017085 281 ITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 281 ~~~Ea~a~g~PvI~s~~~~ 299 (377)
..+..|--|.-+|-+.-|+
T Consensus 218 ~~~~~mk~ga~lIN~aRG~ 236 (317)
T PRK06487 218 RELALMKPGALLINTARGG 236 (317)
T ss_pred HHHhcCCCCeEEEECCCcc
Confidence 6777777776666555443
No 316
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=41.89 E-value=2.1e+02 Score=24.09 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=58.6
Q ss_pred EEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHH-HHHhcCCCCcEEEecCcCCHHH
Q 017085 181 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN-YVMQKKIQDRVHFVNKTLTVAP 259 (377)
Q Consensus 181 ~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~-~~~~~~~~~~v~~~g~~~~~~~ 259 (377)
+=.|++....=+|.+++--+ .+.++...++|.|....++..++... .+++.+
T Consensus 8 iKlGNig~s~~idl~lDErA-----------dRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~---------------- 60 (277)
T PRK00994 8 IKLGNIGMSPVIDLLLDERA-----------DREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWK---------------- 60 (277)
T ss_pred EEecccchHHHHHHHHHhhh-----------cccCceEEEeccCCCCCHHHHHHHHHHHHHhhC----------------
Confidence 34576665555566655432 33789999999987554433332222 222222
Q ss_pred HHHhcCEEEecCCCCCCccchHHHHHHH-cCCcEEE-eCCCCcc--cceecCcceeeecCCC
Q 017085 260 YLAAIDVLVQNSQAWGECFGRITIEAMA-FQLPVLG-TAAGGTT--EIVVNGTTGLLHPVGK 317 (377)
Q Consensus 260 ~~~~adv~l~ps~~~~e~~~~~~~Ea~a-~g~PvI~-s~~~~~~--e~~~~~~~g~~~~~~~ 317 (377)
-|++++-|-+..-+.|...-|.+. .|+|+|+ ||.++.. +-+++.+-|+++-..|
T Consensus 61 ----pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~D 118 (277)
T PRK00994 61 ----PDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVKAD 118 (277)
T ss_pred ----CCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEecC
Confidence 244444443224455666777765 5788775 5555542 4455556787776544
No 317
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=41.77 E-value=1.9e+02 Score=25.58 Aligned_cols=44 Identities=9% Similarity=-0.023 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 320 ITPLAKNIVKLAT--HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 320 ~~~la~~i~~l~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
...++++|.+.+. +|+......+|+.++..+ .+..-+++.+.+.
T Consensus 154 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~---L~~l~~~~~~~l~ 199 (311)
T PRK09545 154 ARATAVAIHDKLVELMPQSKAKLDANLKDFEAQ---LAQTDKQIGNQLA 199 (311)
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 5666777766655 888777777777665443 3444444444333
No 318
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=41.19 E-value=2e+02 Score=25.65 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=58.0
Q ss_pred CeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEE-EecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcC
Q 017085 177 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 255 (377)
Q Consensus 177 ~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~ 255 (377)
.+.+.=+|.+.|.-....+.+++.-.++ .++.|++ ||+|+.-+ ..........+.- |.-.++....
T Consensus 56 g~~~~E~~GVEPNP~~~Tv~kaV~i~ke---------e~idflLAVGGGSViD---~tK~IAa~a~y~G-D~Wdi~~~~~ 122 (384)
T COG1979 56 GIEVIEFGGVEPNPRLETLMKAVEICKE---------ENIDFLLAVGGGSVID---GTKFIAAAAKYDG-DPWDILTKKH 122 (384)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHH---------cCceEEEEecCcchhh---hHHHHHhhcccCC-ChHHHHhcCC
Confidence 4556677889999999999999986655 6788876 56664321 1222222222211 1111111112
Q ss_pred CHHHHHHhcCEEEecCCCCCCccchHHH------HHHHcCCcEEEe
Q 017085 256 TVAPYLAAIDVLVQNSQAWGECFGRITI------EAMAFQLPVLGT 295 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~e~~~~~~~------Ea~a~g~PvI~s 295 (377)
.+.+.+--..|+-+|... +|.-+..++ |=+.++-|.+-.
T Consensus 123 ~i~~alP~g~VLTLpATG-SEmn~~aVIt~~~t~eK~~~~S~~v~P 167 (384)
T COG1979 123 KIKDALPIGTVLTLPATG-SEMNAGAVITNEETKEKLGFGSPLVFP 167 (384)
T ss_pred ccccccccceEEEccccc-cccCCCceecccccccceeccCccccc
Confidence 355556666777777653 555444444 344555555443
No 319
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.16 E-value=2.6e+02 Score=24.90 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=78.8
Q ss_pred eccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc---CCHHH
Q 017085 183 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAP 259 (377)
Q Consensus 183 ~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~---~~~~~ 259 (377)
+-.-.+.|.++.+++.++ .+|+ .+.+.|.+.... ..-....+.+..|++ +.+..+- +-+.+
T Consensus 128 v~~~s~~~t~~dlv~~~k-----------~~p~-~v~~~~~g~Gs~--dhl~~~~~~k~~Gi~--~~~Vpy~g~gea~ta 191 (319)
T COG3181 128 VRADSPYKTLKDLVAYAK-----------ADPG-SVIGGGSGLGSA--DHLAGALFAKAAGIK--ITYVPYKGGGEALTA 191 (319)
T ss_pred EeCCCCcccHHHHHHHHH-----------hCCC-eEEecCCCCCcH--HHHHHHHHHHHhCCc--eeEEeecCccHHHHH
Confidence 344467899999888765 2366 444444443221 222334555666763 5555443 44566
Q ss_pred HH-HhcCEEEecCCCCCCccchHHHHHHHcCCcEEE--------eCCCCcccc----eecCcceeeecCCCC--ChhHHH
Q 017085 260 YL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG--------TAAGGTTEI----VVNGTTGLLHPVGKE--GITPLA 324 (377)
Q Consensus 260 ~~-~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~--------s~~~~~~e~----~~~~~~g~~~~~~~~--~~~~la 324 (377)
++ ...|+..... .|..+ .+++-...+-.|. .|.+.+.|. +-..-+|+..+.+-. ..+.+.
T Consensus 192 Llgg~v~a~~~~~---se~~~--~vksG~lr~Lav~s~eRl~~~pdvPT~~E~G~~~~~~~wrgvfap~g~~~e~~~~~~ 266 (319)
T COG3181 192 LLGGHVDAGSTNL---SELLS--QVKSGTLRLLAVFSEERLPGLPDVPTLKEQGYDVVMSIWRGVFAPAGTPDEIIAKLS 266 (319)
T ss_pred HhcCceeeeecCh---hhhhh--hhccCceEEEEeechhhcCCCCCCCChHhcCCceeeeeeeEEEeCCCCCHHHHHHHH
Confidence 66 4566554321 12111 2222222222222 233322222 011235666665531 245677
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017085 325 KNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 363 (377)
Q Consensus 325 ~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 363 (377)
+++++++++++..+.+.+....- ..-+-+.....+++
T Consensus 267 ~a~kk~l~s~e~~~~~~~~~~~~--~~~~~eel~a~i~~ 303 (319)
T COG3181 267 AALKKALASPEWQKRLKELGLVP--SYLTGEELKAYIEK 303 (319)
T ss_pred HHHHHHhcCHHHHHHHHhcCCCC--ccCCHHHHHHHHHH
Confidence 88999999999887776665432 22344444444444
No 320
>PRK06932 glycerate dehydrogenase; Provisional
Probab=41.11 E-value=2e+02 Score=25.54 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=50.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC---------cCCHHHHHHhcCEEEe--cCCCCCCc---cc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---------TLTVAPYLAAIDVLVQ--NSQAWGEC---FG 279 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~---------~~~~~~~~~~adv~l~--ps~~~~e~---~~ 279 (377)
.+-++-|+|-| .--..+.+.++.+|. +|..... ..++.++++.||++++ |.. .++ ++
T Consensus 146 ~gktvgIiG~G-----~IG~~va~~l~~fg~--~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt--~~T~~li~ 216 (314)
T PRK06932 146 RGSTLGVFGKG-----CLGTEVGRLAQALGM--KVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLT--ETTQNLIN 216 (314)
T ss_pred CCCEEEEECCC-----HHHHHHHHHHhcCCC--EEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCC--hHHhcccC
Confidence 35677788887 456667777777765 3544432 1357899999999874 544 444 45
Q ss_pred hHHHHHHHcCCcEEEeCCCC
Q 017085 280 RITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 280 ~~~~Ea~a~g~PvI~s~~~~ 299 (377)
-..++.|--|.-+|-+.-|+
T Consensus 217 ~~~l~~mk~ga~lIN~aRG~ 236 (314)
T PRK06932 217 AETLALMKPTAFLINTGRGP 236 (314)
T ss_pred HHHHHhCCCCeEEEECCCcc
Confidence 66777777777666655443
No 321
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=40.85 E-value=3e+02 Score=25.53 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=61.5
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-CcEEEecCc-------CC--
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT-------LT-- 256 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~g~~-------~~-- 256 (377)
+.+.|.-.+. ++-+...|+-.|.+..+.++++.|.| ..--.+.+++...|.. .+|...... ++
T Consensus 173 DDqqGTaiv~--lA~llnalk~~gk~l~d~kiv~~GAG-----AAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~ 245 (432)
T COG0281 173 DDQQGTAIVT--LAALLNALKLTGKKLKDQKIVINGAG-----AAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLT 245 (432)
T ss_pred ccccHHHHHH--HHHHHHHHHHhCCCccceEEEEeCCc-----HHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccc
Confidence 4556654432 22233344443435678999999998 4555666777777764 455555421 12
Q ss_pred ---HH--------------HHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 257 ---VA--------------PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 257 ---~~--------------~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
.. ..+..+|+++-.|. ...|---+++.|+.. |+|-.
T Consensus 246 ~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~--~G~~t~e~V~~Ma~~-PiIfa 298 (432)
T COG0281 246 MNQKKYAKAIEDTGERTLDLALAGADVLIGVSG--VGAFTEEMVKEMAKH-PIIFA 298 (432)
T ss_pred cchHHHHHHHhhhccccccccccCCCEEEEcCC--CCCcCHHHHHHhccC-CEEee
Confidence 11 12345899998887 666777888999888 77754
No 322
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=40.81 E-value=40 Score=23.69 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=36.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
+..+|.|-...--....+++.++++|++..+... ..+++..+...+|+++....
T Consensus 5 L~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~-~v~~~~~~~~~aDiiv~s~~ 58 (93)
T COG3414 5 LAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQC-AVDEIKALTDGADIIVTSTK 58 (93)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHcCCCceeeeE-EecccccCCCcccEEEEehH
Confidence 4567777544334577889999999986333222 23678888899999986544
No 323
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=40.69 E-value=2e+02 Score=23.49 Aligned_cols=105 Identities=11% Similarity=0.093 Sum_probs=56.2
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCC-cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
.-+++++|... ....-+++.++..|-.. +-.|+|.. +-...-+..=|++++.. ...-...+.||..+|+|
T Consensus 61 ~~~ILfVgtk~----~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~d---p~~~~~Av~EA~~l~IP 133 (196)
T TIGR01012 61 PEDILVVSARI----YGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTD---PRADHQALKEASEVGIP 133 (196)
T ss_pred CCeEEEEecCH----HHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEEC---CccccHHHHHHHHcCCC
Confidence 34778888863 23444556665554321 12466643 11112244556655533 23346789999999999
Q ss_pred EEEe-CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 292 VLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 292 vI~s-~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+- |.-.-++.+ -+.++-+| |.-.-..-+..++.
T Consensus 134 ~Iai~DTn~dp~~v-----dypIP~Nd-ds~~Si~li~~lla 169 (196)
T TIGR01012 134 IVALCDTDNPLRYV-----DLVIPTNN-KGRHSLALIYWLLA 169 (196)
T ss_pred EEEEeeCCCCCccC-----CEEECCCC-chHHHHHHHHHHHH
Confidence 9986 444444444 14555444 33344444444443
No 324
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.39 E-value=2e+02 Score=25.17 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=45.2
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccc-ee----c---CcceeeecCCCCChhHHHHHHHH
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI-VV----N---GTTGLLHPVGKEGITPLAKNIVK 329 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~-~~----~---~~~g~~~~~~~~~~~~la~~i~~ 329 (377)
..-++.||+++..... .|++--.++....-+.++|... .++..+ +. + +-.-| .++.+ ...++++|.+
T Consensus 61 ~~~l~~Adlvv~~G~~-~E~wl~~~~~~~~~~~~~v~~~-~~i~~~~~~~~~~~~~~dPH~W-ldp~~--~~~~a~~Ia~ 135 (287)
T cd01137 61 IKKLSKADLILYNGLN-LEPWLERLVKNAGKDVPVVAVS-EGIDPIPLEEGHYKGKPDPHAW-MSPKN--AIIYVKNIAK 135 (287)
T ss_pred HHHHHhCCEEEEcCCC-cHHHHHHHHHhcCCCCcEEEec-CCccccccCccccCCCCCCCcC-cCHHH--HHHHHHHHHH
Confidence 3556788888866542 4554444444433234444332 111110 00 0 11223 44545 7778888877
Q ss_pred Hhh--CHHHHHHHHHHHHHHHH
Q 017085 330 LAT--HVERRLTMGKRGYERVK 349 (377)
Q Consensus 330 l~~--~~~~~~~~~~~~~~~~~ 349 (377)
.+. ||+......+|+.++..
T Consensus 136 ~L~~~dP~~~~~y~~N~~~~~~ 157 (287)
T cd01137 136 ALSEADPANAETYQKNAAAYKA 157 (287)
T ss_pred HHHHHCcccHHHHHHHHHHHHH
Confidence 665 77766666666666543
No 325
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=40.28 E-value=2.2e+02 Score=23.77 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=38.7
Q ss_pred cCEEEecCCCCCCccchHHHHHHHc---CCcEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHH
Q 017085 264 IDVLVQNSQAWGECFGRITIEAMAF---QLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 330 (377)
Q Consensus 264 adv~l~ps~~~~e~~~~~~~Ea~a~---g~PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l 330 (377)
.|++++-..- .+.-|..+++.+.. +.|+|.. .... ..+.+..|..|++..+.+ .+++.++|.++
T Consensus 50 ~DlvilD~~~-p~~~G~eli~~l~~~~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~--~~~l~~~i~~~ 120 (239)
T PRK10430 50 IDLILLDIYM-QQENGLDLLPVLHEAGCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQ--ASRFEEALTGW 120 (239)
T ss_pred CCEEEEecCC-CCCCcHHHHHHHHhhCCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Confidence 5777654331 33345566665542 5666644 2222 223345577889998887 89999999764
No 326
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=40.18 E-value=2e+02 Score=23.24 Aligned_cols=107 Identities=7% Similarity=0.042 Sum_probs=59.0
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc-----C
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF-----Q 289 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~-----g 289 (377)
+++++.+.. .....+....+..+. .+.......+....+. ..|++++-..- ....|..+++.+.. .
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~~~~d~vi~d~~~-~~~~g~~~~~~l~~~~~~~~ 76 (226)
T TIGR02154 4 RILVVEDEP----AIRELIAYNLEKAGY--DVVEAGDGDEALTLINERGPDLILLDWML-PGTSGIELCRRLRRRPETRA 76 (226)
T ss_pred eEEEEeCCH----HHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHhcCCCEEEEECCC-CCCcHHHHHHHHHccccCCC
Confidence 455665542 344555555555443 2333322233333332 36777765431 33445666766642 4
Q ss_pred CcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|+-. ... ..+.+..|..+++..+.+ .+++.+++..++.
T Consensus 77 ~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~--~~~l~~~i~~~~~ 121 (226)
T TIGR02154 77 IPIIMLTARGEEEDRVRGLETGADDYITKPFS--PRELLARIKAVLR 121 (226)
T ss_pred CCEEEEecCCCHHHHHHHHhcCcceEEeCCCC--HHHHHHHHHHHhc
Confidence 6776542 222 222344567788888877 8999998887765
No 327
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=40.16 E-value=1.1e+02 Score=28.30 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=47.5
Q ss_pred CeEEEEEec-CCCcccHHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcE
Q 017085 215 SVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 292 (377)
Q Consensus 215 ~~~l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~Pv 292 (377)
+.-=+|+|. |..+.....++++++++..|...-+..+|.. ..-.+.+...|++|+-+. .. +++..+-++-+|+
T Consensus 267 ~~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKLAnF~eIDvfV~iaC--p~---lsid~s~~F~kPi 341 (453)
T KOG2648|consen 267 RTIGLIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGEINPAKLANFPEIDVFVQIAC--PR---LSIDWSKEFYKPL 341 (453)
T ss_pred CeEEEEEecccccCCHHHHHHHHHHHHHcCCceEEEEecCCCHHHhcCCccccEEEEEeC--cc---cchhhhhhhcccc
Confidence 333356666 4344445678899999999988888888876 223355666999997665 22 4444444455555
Q ss_pred EE
Q 017085 293 LG 294 (377)
Q Consensus 293 I~ 294 (377)
|+
T Consensus 342 lt 343 (453)
T KOG2648|consen 342 LT 343 (453)
T ss_pred cc
Confidence 54
No 328
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=39.91 E-value=2.5e+02 Score=24.42 Aligned_cols=89 Identities=15% Similarity=0.044 Sum_probs=47.0
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC-Ccccce----e---------------c---C--cceee
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG-GTTEIV----V---------------N---G--TTGLL 312 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~-~~~e~~----~---------------~---~--~~g~~ 312 (377)
..-++.||++|..... .|++--.+++... +.++|....+ +..... . + + +-=+.
T Consensus 47 ~~~l~~Adliv~~G~~-le~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~dPHiW 124 (286)
T cd01019 47 ARKLQEADLVVWIGPD-LEAFLDKVLQGRK-KGKVLTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGGLDPHLW 124 (286)
T ss_pred HHHHHhCCEEEEeCCC-chHHHHHHHHhcC-cCceEecccCCcccccccccccccccccccccccccCCCCCCCCCCccC
Confidence 3566788988877653 5666666666542 3445433211 110000 0 0 0 01123
Q ss_pred ecCCCCChhHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 017085 313 HPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 350 (377)
Q Consensus 313 ~~~~~~~~~~la~~i~~l~~--~~~~~~~~~~~~~~~~~~ 350 (377)
.++.+ ...++++|.+.+. +|+......+|+.++..+
T Consensus 125 ldp~n--~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 162 (286)
T cd01019 125 LSPEN--AAEVAQAVAEKLSALDPDNAATYAANLEAFNAR 162 (286)
T ss_pred CCHHH--HHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHH
Confidence 34444 6677777776665 787776777776665543
No 329
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=39.74 E-value=1.9e+02 Score=24.89 Aligned_cols=43 Identities=14% Similarity=0.000 Sum_probs=31.6
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~ 299 (377)
+++.++...+|+++..|. .+...-.+..|+..|+|+|+...|-
T Consensus 60 ~d~~~l~~~~DvVIdfT~--p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 60 DDLEAVETDPDVLIDFTT--PEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred CCHHHhcCCCCEEEECCC--hHHHHHHHHHHHHCCCCEEEECCCC
Confidence 344444356899998776 6666677889999999999865543
No 330
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=39.68 E-value=2.2e+02 Score=23.53 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=54.2
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CC------HHHHHHhcCEEEecCCCCCCccchHHHHHHHc
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LT------VAPYLAAIDVLVQNSQAWGECFGRITIEAMAF 288 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~------~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~ 288 (377)
.|++.|++....-++...+++...+.|++...+++.+. .. ..+.+...++.+.+- .-.+...+.-|..+
T Consensus 96 ~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftIItQ---~FHceRAlfiA~~~ 172 (235)
T COG2949 96 YLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTIITQ---RFHCERALFIARQM 172 (235)
T ss_pred EEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEEec---ccccHHHHHHHHHh
Confidence 45567776543323445566666778988777766542 22 334555566666544 45678899999999
Q ss_pred CCcEEEeCCCCcc
Q 017085 289 QLPVLGTAAGGTT 301 (377)
Q Consensus 289 g~PvI~s~~~~~~ 301 (377)
|+--++...+...
T Consensus 173 gIdAic~~ap~p~ 185 (235)
T COG2949 173 GIDAICFAAPDPE 185 (235)
T ss_pred CCceEEecCCCcc
Confidence 9999998877643
No 331
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=39.56 E-value=22 Score=24.07 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=14.7
Q ss_pred cHhhHHHhcCceEEEEEec
Q 017085 2 ELAFLLRGVGTKVNWITIQ 20 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~ 20 (377)
++.++|+++||+|.-+...
T Consensus 12 ~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENE 30 (80)
T ss_pred HHHHHHHHCCCEEEecCCc
Confidence 4678899999998877643
No 332
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=39.42 E-value=2.4e+02 Score=29.01 Aligned_cols=104 Identities=9% Similarity=0.063 Sum_probs=62.6
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh----cCEEEecCCCCCCccchHHHHHH---HcC
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA----IDVLVQNSQAWGECFGRITIEAM---AFQ 289 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adv~l~ps~~~~e~~~~~~~Ea~---a~g 289 (377)
+++++.+.. .....+.......|. .+......++....+.. .|++++ .. ....|..+++.+ ...
T Consensus 699 ~ILvVddd~----~~~~~l~~~L~~~G~--~v~~~~s~~~al~~l~~~~~~~DlVll-~~--~~~~g~~l~~~l~~~~~~ 769 (828)
T PRK13837 699 TVLLVEPDD----ATLERYEEKLAALGY--EPVGFSTLAAAIAWISKGPERFDLVLV-DD--RLLDEEQAAAALHAAAPT 769 (828)
T ss_pred EEEEEcCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCceEEEE-CC--CCCCHHHHHHHHHhhCCC
Confidence 456666542 345666667777664 35555444444454432 588888 33 444455555444 345
Q ss_pred CcEEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|...... ..+....| .+++..|-+ .++|...|..++.
T Consensus 770 ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~--~~~L~~~l~~~l~ 813 (828)
T PRK13837 770 LPIILGGNSKTMALSPDLLASV-AEILAKPIS--SRTLAYALRTALA 813 (828)
T ss_pred CCEEEEeCCCchhhhhhHhhcc-CcEEeCCCC--HHHHHHHHHHHHc
Confidence 7877653222 23334445 889999988 9999999988764
No 333
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=38.96 E-value=54 Score=24.72 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=32.1
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE-------------E---ecC--cCCHHHHHHhcCEEEecC
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-------------F---VNK--TLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~-------------~---~g~--~~~~~~~~~~adv~l~ps 271 (377)
.-.++++|.+.... ...+++.+++++++.+--.. + .|. .....+++..||+++.-.
T Consensus 12 ~rP~il~G~g~~~~-~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG 85 (137)
T PF00205_consen 12 KRPVILAGRGARRS-GAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIG 85 (137)
T ss_dssp SSEEEEE-HHHHHT-TCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEES
T ss_pred CCEEEEEcCCcChh-hHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEEC
Confidence 34567777753211 24567777777777652111 2 222 145678899999988543
No 334
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=38.95 E-value=2e+02 Score=25.47 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=46.9
Q ss_pred EEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCe-EEEEEecCCCc----ccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 179 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV-HAVIIGSDMNA----QTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 179 ~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~-~l~i~G~~~~~----~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
-++++| ....--++++++++...+..... .+|+. +|+|..++... ......+|++++.+.|+.-+|.+.++
T Consensus 149 g~v~vg--~s~dTa~Fav~~i~~WW~~~g~~--~yp~a~~lli~~D~GgsN~~r~r~wk~~L~~la~~~gl~I~v~hyPP 224 (311)
T PF07592_consen 149 GWVSVG--TSHDTADFAVDSIRRWWEEMGKA--RYPHAKRLLITADNGGSNGSRRRLWKKRLQELADETGLSIRVCHYPP 224 (311)
T ss_pred EEEEEe--cCcccHHHHHHHHHHHHHHhChh--hcCchheEEEeccCCCCccchhHHHHHHHHHHHHHhCCEEEEEEcCC
Confidence 345666 34566788999999888766332 55654 45555443222 12357789999999999877777664
No 335
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=38.92 E-value=3.8e+02 Score=26.17 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=51.3
Q ss_pred cCCCeEEEEEecCCCcccHHHHHHHHHHHh-cCCC-----CcEEEecC-------c------------------CCHHHH
Q 017085 212 EVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQ-----DRVHFVNK-------T------------------LTVAPY 260 (377)
Q Consensus 212 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~-----~~v~~~g~-------~------------------~~~~~~ 260 (377)
...+.+++++|.|.-.-. ..+.+...... .|++ .++.+... + .++.+.
T Consensus 318 ~l~d~riv~~GAGsAgig-ia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 396 (581)
T PLN03129 318 DLADQRILFAGAGEAGTG-IAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEA 396 (581)
T ss_pred chhhceEEEECCCHHHHH-HHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHH
Confidence 456899999999842211 22333333332 4663 35555431 1 246666
Q ss_pred HHh--cCEEEecCCCCCCccchHHHHHHH--cCCcEEEe
Q 017085 261 LAA--IDVLVQNSQAWGECFGRITIEAMA--FQLPVLGT 295 (377)
Q Consensus 261 ~~~--adv~l~ps~~~~e~~~~~~~Ea~a--~g~PvI~s 295 (377)
+.. .|+++-.|.. ...|.--++++|+ +..|+|-.
T Consensus 397 v~~vkptvLIG~S~~-~g~Ft~evi~~Ma~~~~rPIIFa 434 (581)
T PLN03129 397 VKAIKPTVLIGLSGV-GGTFTKEVLEAMASLNERPIIFA 434 (581)
T ss_pred HhccCCCEEEEecCC-CCCCCHHHHHHHHhcCCCCEEEE
Confidence 777 8999977752 4568888999998 78888854
No 336
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=38.65 E-value=53 Score=22.12 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=34.0
Q ss_pred ccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhh
Q 017085 105 KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAE 155 (377)
Q Consensus 105 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~ 155 (377)
......+.+++......+.+++ .| ..++.-+|-++++..+.+..
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~-----~G--~~~V~yLPLAa~~~~~~p~~ 57 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRN-----LG--AENVFYLPLAANPERFRPIP 57 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHH-----cC--CCCEEEccccCCHHHhCccc
Confidence 4456778888888888887774 33 46799999999999987654
No 337
>PRK09483 response regulator; Provisional
Probab=38.63 E-value=2.1e+02 Score=23.05 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=41.2
Q ss_pred cCEEEecCCCCCCccchHHHHHHH---cCCcEEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 264 IDVLVQNSQAWGECFGRITIEAMA---FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 264 adv~l~ps~~~~e~~~~~~~Ea~a---~g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
.|++++-... .+..|..+++.+. ..+|+|+..... ....+..|..|++..+.+ .+++..++..++..
T Consensus 48 ~dlvi~d~~~-~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~--~~~l~~~i~~~~~g 121 (217)
T PRK09483 48 VDVVLMDMNM-PGIGGLEATRKILRYTPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAA--PQEVVSAIRSVHSG 121 (217)
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHHHCCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHCC
Confidence 5777764331 3445566665553 346766543222 223344577888888877 89999999887763
No 338
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=38.46 E-value=2.3e+02 Score=23.52 Aligned_cols=59 Identities=10% Similarity=0.083 Sum_probs=34.3
Q ss_pred CCccchHHHHHHH-----cCCcEEEe--CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHH
Q 017085 275 GECFGRITIEAMA-----FQLPVLGT--AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 335 (377)
Q Consensus 275 ~e~~~~~~~Ea~a-----~g~PvI~s--~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~ 335 (377)
.++-|+.++..+- +.+-+|+. +.-.+.+-+..|.-.+++.|-. .+-|-++|.+......
T Consensus 57 Pd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~--~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 57 PDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFT--FERLQQALTRYRQKRH 122 (224)
T ss_pred CCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheeccee--HHHHHHHHHHHHHHHH
Confidence 5556666665554 22223322 2233455555566677888876 8888888877655433
No 339
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=38.37 E-value=1.2e+02 Score=25.61 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=30.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHh-cCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
.....+++|+.. .. ...+...+.+++ .++| .+.|.|..+.+ -..+|.+++||.
T Consensus 31 ~gtDai~VGGS~-~~-~~~d~vv~~ik~~~~lP-vilfPg~~~~v---s~~aDail~~sv 84 (230)
T PF01884_consen 31 SGTDAIIVGGSD-TG-VTLDNVVALIKRVTDLP-VILFPGSPSQV---SPGADAILFPSV 84 (230)
T ss_dssp TT-SEEEEE-ST-HC-HHHHHHHHHHHHHSSS--EEEETSTCCG-----TTSSEEEEEEE
T ss_pred cCCCEEEECCCC-Cc-cchHHHHHHHHhcCCCC-EEEeCCChhhc---CcCCCEEEEEEE
Confidence 567778888865 11 234445555554 5555 67777765554 367999998876
No 340
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=38.34 E-value=3.2e+02 Score=25.16 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=68.4
Q ss_pred cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCE
Q 017085 189 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDV 266 (377)
Q Consensus 189 ~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv 266 (377)
..|.+..++++.+....-.+. ....+-.+.|+|..... ....+++++++++|+..+..+.+.. +++.. +..|.+
T Consensus 135 ~~G~~~a~~al~~~l~~~~~~-~~~~~~~VNiig~~~~~--~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~~ 210 (406)
T cd01967 135 SLGHHIANDAILDHLVGTKEP-EEKTPYDVNIIGEYNIG--GDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAKL 210 (406)
T ss_pred cHHHHHHHHHHHHHhcCCCCc-CCCCCCeEEEEeccccc--hhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCCE
Confidence 467888887776543210000 01134567888874221 2568899999999998777777543 55544 555665
Q ss_pred EEecCCCCCCccchHHHHHHH--cCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 267 LVQNSQAWGECFGRITIEAMA--FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 267 ~l~ps~~~~e~~~~~~~Ea~a--~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
-+..+. . ++..+.+.|. +|+|.+....-| ..+ .+++.+.|.+++..
T Consensus 211 niv~~~--~--~~~~~a~~L~~r~GiP~~~~~p~G---------------~~~--t~~~l~~l~~~lg~ 258 (406)
T cd01967 211 NLVHCS--R--SMNYLAREMEERYGIPYMEVNFYG---------------FED--TSESLRKIAKFFGD 258 (406)
T ss_pred EEEECh--H--HHHHHHHHHHHhhCCCEEEecCCc---------------HHH--HHHHHHHHHHHhCC
Confidence 554332 1 2444555553 789987532111 112 56677777666654
No 341
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=38.32 E-value=1.1e+02 Score=24.15 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=42.6
Q ss_pred HHHHHHhcCEEEecCCCCCC----ccchHHHHHHHcCCcEEEeC-----CCCcccceecCcceeeecCCCCChhHHHHHH
Q 017085 257 VAPYLAAIDVLVQNSQAWGE----CFGRITIEAMAFQLPVLGTA-----AGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 327 (377)
Q Consensus 257 ~~~~~~~adv~l~ps~~~~e----~~~~~~~Ea~a~g~PvI~s~-----~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i 327 (377)
+...+..||+.+.--....| .|.-.+-|.|-+++|+|++- .+...++-.-+..-+...+.| -+.+...|
T Consensus 94 l~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~N--R~~i~~~I 171 (179)
T COG1618 94 LRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPEN--RNRILNEI 171 (179)
T ss_pred HHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccch--hhHHHHHH
Confidence 55566778998863221122 34445568889999999873 233444332232223256666 56676666
Q ss_pred HHHhh
Q 017085 328 VKLAT 332 (377)
Q Consensus 328 ~~l~~ 332 (377)
..+|.
T Consensus 172 l~~L~ 176 (179)
T COG1618 172 LSVLK 176 (179)
T ss_pred HHHhc
Confidence 66654
No 342
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=38.00 E-value=1.6e+02 Score=25.53 Aligned_cols=71 Identities=8% Similarity=0.152 Sum_probs=45.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
+++++..+-+.. .++.++.+.+++.. ....++.+++..+|+++..+. .....-...+++..|++|+
T Consensus 30 ~~~el~aV~dr~------~~~a~~~a~~~g~~------~~~~~~eell~~~D~Vvi~tp--~~~h~e~~~~aL~aGk~Vi 95 (271)
T PRK13302 30 PGLTLSAVAVRD------PQRHADFIWGLRRP------PPVVPLDQLATHADIVVEAAP--ASVLRAIVEPVLAAGKKAI 95 (271)
T ss_pred CCeEEEEEECCC------HHHHHHHHHhcCCC------cccCCHHHHhcCCCEEEECCC--cHHHHHHHHHHHHcCCcEE
Confidence 577877555532 23445555555421 112467777888999988765 4555555678899999999
Q ss_pred EeCCC
Q 017085 294 GTAAG 298 (377)
Q Consensus 294 ~s~~~ 298 (377)
+...+
T Consensus 96 ~~s~g 100 (271)
T PRK13302 96 VLSVG 100 (271)
T ss_pred Eecch
Confidence 86544
No 343
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=37.79 E-value=2.7e+02 Score=24.07 Aligned_cols=156 Identities=12% Similarity=0.069 Sum_probs=73.7
Q ss_pred HHhhhcccEEEEcCchhh-hHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhh
Q 017085 52 INTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRE 130 (377)
Q Consensus 52 ~~~~~~~Div~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 130 (377)
.+...++|-+++.+.... ..+..+....+ |+|..-...... ...+.+.+..........+.+.
T Consensus 51 ~l~~~~vDGiI~~s~~~~~~~l~~~~~~~i-----PvV~~~~~~~~~----------~~~~~V~~D~~~a~~~a~~~Li- 114 (279)
T PF00532_consen 51 LLLQRRVDGIILASSENDDEELRRLIKSGI-----PVVLIDRYIDNP----------EGVPSVYIDNYEAGYEATEYLI- 114 (279)
T ss_dssp HHHHTTSSEEEEESSSCTCHHHHHHHHTTS-----EEEEESS-SCTT----------CTSCEEEEEHHHHHHHHHHHHH-
T ss_pred HHHhcCCCEEEEecccCChHHHHHHHHcCC-----CEEEEEeccCCc----------ccCCEEEEcchHHHHHHHHHHH-
Confidence 345678898888865433 23333333333 555433321111 2335555554444433333333
Q ss_pred hhhccCCC-eEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhh
Q 017085 131 RLRIKMPD-TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 209 (377)
Q Consensus 131 ~~~~~~~~-~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~ 209 (377)
..| ..+ +.++...-+... ..... ... .+..++.|++.+...+ ..|..+. +.-.+++.++++
T Consensus 115 ~~G--h~~~I~~i~~~~~~~~--~~~R~---~Gy-~~Al~~~Gl~~~~~~i-~~~~~~~----~~g~~~~~~ll~----- 176 (279)
T PF00532_consen 115 KKG--HRRPIAFIGGPEDSST--SRERL---QGY-RDALKEAGLPIDEEWI-FEGDFDY----ESGYEAARELLE----- 176 (279)
T ss_dssp HTT--CCSTEEEEEESTTTHH--HHHHH---HHH-HHHHHHTTSCEEEEEE-EESSSSH----HHHHHHHHHHHH-----
T ss_pred hcc--cCCeEEEEecCcchHH--HHHHH---HHH-HHHHHHcCCCCCcccc-cccCCCH----HHHHHHHHHHHh-----
Confidence 333 356 666664333221 11100 011 2344567885444444 3454443 333455555444
Q ss_pred cccCCCeEEEEEecCCCcccHHHHHHHHHHHhcC---CCCcE
Q 017085 210 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK---IQDRV 248 (377)
Q Consensus 210 ~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~---~~~~v 248 (377)
+.|++..+++++. ....-..+.+++.| .++.|
T Consensus 177 --~~p~idai~~~nd-----~~A~ga~~~l~~~gr~~ip~di 211 (279)
T PF00532_consen 177 --SHPDIDAIFCAND-----MMAIGAIRALRERGRLKIPEDI 211 (279)
T ss_dssp --TSTT-SEEEESSH-----HHHHHHHHHHHHTT-TCTTTEE
T ss_pred --hCCCCEEEEEeCH-----HHHHHHHHHHHHcCCcccChhh
Confidence 4478888888775 34445556666666 45555
No 344
>PRK03094 hypothetical protein; Provisional
Probab=37.78 E-value=25 Score=23.78 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=13.7
Q ss_pred cHhhHHHhcCceEEEEEe
Q 017085 2 ELAFLLRGVGTKVNWITI 19 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~ 19 (377)
++.++|+++||+|.=+..
T Consensus 12 ~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRS 29 (80)
T ss_pred HHHHHHHHCCCEEEecCc
Confidence 467888999999876643
No 345
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=37.63 E-value=16 Score=22.68 Aligned_cols=44 Identities=18% Similarity=0.055 Sum_probs=14.2
Q ss_pred HHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHH
Q 017085 283 IEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 328 (377)
Q Consensus 283 ~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~ 328 (377)
-=|...|+|+++..-.-..+-+ |.....++....++++|.++|.
T Consensus 9 ~~A~~~~lp~~~gSDAH~~~~v--G~~~t~~~~~~~s~~~l~~alr 52 (56)
T PF13263_consen 9 ELAEKYGLPFTGGSDAHFLEEV--GRGYTEFEGPIRSPEELLEALR 52 (56)
T ss_dssp HHHHHTT--EEEE--BSSGGGT--TTTHHHH---------------
T ss_pred HHHHHcCCCeEeEEcccChhhc--CCEeeecccccccccccccccc
Confidence 3466789999987544445445 3333344332222566766664
No 346
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=37.27 E-value=37 Score=21.84 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=37.2
Q ss_pred eeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEE
Q 017085 113 AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA 181 (377)
Q Consensus 113 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~ 181 (377)
+-+........+++.+....+++++...++++|--++.- .....+|+.++..+.+
T Consensus 10 ~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~--------------~tL~~~~i~~~~~I~l 64 (69)
T PF00240_consen 10 LEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDD--------------KTLSDYGIKDGSTIHL 64 (69)
T ss_dssp EEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTT--------------SBTGGGTTSTTEEEEE
T ss_pred EEECCCCCHHHhhhhcccccccccccceeeeeeecccCc--------------CcHHHcCCCCCCEEEE
Confidence 334455566777888888889999999999999765321 1234577777765444
No 347
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=37.23 E-value=28 Score=32.19 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=17.3
Q ss_pred cHhhHHHhcCceEEEEEecC
Q 017085 2 ELAFLLRGVGTKVNWITIQK 21 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~ 21 (377)
-|+++|+++||||+++|...
T Consensus 20 aL~~eL~~~gheV~~~~~~~ 39 (406)
T COG1819 20 ALGKELRRRGHEVVFASTGK 39 (406)
T ss_pred HHHHHHHhcCCeEEEEeCHH
Confidence 37899999999999999654
No 348
>PRK14982 acyl-ACP reductase; Provisional
Probab=37.13 E-value=3.2e+02 Score=24.69 Aligned_cols=108 Identities=12% Similarity=0.154 Sum_probs=54.3
Q ss_pred CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec--C------cceeeecCCCCChh-HHHHH
Q 017085 256 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--G------TTGLLHPVGKEGIT-PLAKN 326 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~--~------~~g~~~~~~~~~~~-~la~~ 326 (377)
++.+.+..+|+++..+.. .++ .++.+.....|.+..|.+-.+++-.. . +-|++--+.+ ++ ++.+.
T Consensus 208 ~l~~~l~~aDiVv~~ts~-~~~---~~I~~~~l~~~~~viDiAvPRDVd~~v~~~~V~v~~gG~V~~p~~--vd~~l~~~ 281 (340)
T PRK14982 208 SLEEALPEADIVVWVASM-PKG---VEIDPETLKKPCLMIDGGYPKNLDTKVQGPGIHVLKGGIVEHSLD--IDWKIMEI 281 (340)
T ss_pred hHHHHHccCCEEEECCcC-CcC---CcCCHHHhCCCeEEEEecCCCCCCcccCCCCEEEEeCCccccCCC--cCccHHHH
Confidence 355788899988865431 121 22434444788998876644444211 1 1233444555 55 55443
Q ss_pred HHHHhhCHHHHHHHHHH---HHHHHHHhcCHHHH---HHHHHHHHHHHH
Q 017085 327 IVKLATHVERRLTMGKR---GYERVKEIFQEHHM---AERIAVVLKEVL 369 (377)
Q Consensus 327 i~~l~~~~~~~~~~~~~---~~~~~~~~f~~~~~---~~~~~~~~~~~~ 369 (377)
+..-+........+.+. +.+-..++|||-+- .++..++++-..
T Consensus 282 v~~~~~~r~~~Ac~AEtiiL~leg~~~~fS~Gr~~i~~~~v~~i~~~a~ 330 (340)
T PRK14982 282 AEMDNPQRQMFACFAEAMLLEFEGCHTNFSWGRNQITLEKMEFIGEASV 330 (340)
T ss_pred HhccchhhHHHHHHHHHHHHHhcCCccCCCcCccccCHHHHHHHHHHHH
Confidence 33212122222222221 12222357999843 777777776543
No 349
>PRK13761 hypothetical protein; Provisional
Probab=37.13 E-value=2.5e+02 Score=23.50 Aligned_cols=95 Identities=9% Similarity=0.140 Sum_probs=57.1
Q ss_pred HHhcCEEEecCCCCCCccchHHHHHH-HcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHH
Q 017085 261 LAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLT 339 (377)
Q Consensus 261 ~~~adv~l~ps~~~~e~~~~~~~Ea~-a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~ 339 (377)
+..||+++.|-. +|= =.||+ .+|+-||+-|...+.-.-+-. -+.- ++.+..++-.+..-...++.
T Consensus 148 Iy~ADVVLVPLE---DGD---R~EaL~~mGK~VI~IDLNPLSRTar~A---~itI-----VDni~RA~p~m~~~~~elk~ 213 (248)
T PRK13761 148 IYSADVVLVPLE---DGD---RTEALVKMGKTVIAIDLNPLSRTARTA---TITI-----VDNITRAVPNMTEYARELKK 213 (248)
T ss_pred ceeccEEEecCC---CCc---HHHHHHHcCCeEEEEeCCCcccccccC---ceee-----ehhHHHHHHHHHHHHHHHhc
Confidence 457899999985 332 24554 689999999865554333211 1111 45666666666554444444
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017085 340 MGKRGYERVKEIFQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 340 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 369 (377)
......+.+.+.|+.+.....-.+.+.+-+
T Consensus 214 ~~~~el~~iv~~~dN~~~L~~al~~I~~rl 243 (248)
T PRK13761 214 KDREELEEIVENYDNKKNLSEALKEIRERL 243 (248)
T ss_pred CCHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 444444556677998888777666655433
No 350
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=36.98 E-value=3.4e+02 Score=24.95 Aligned_cols=77 Identities=10% Similarity=0.124 Sum_probs=50.5
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC----------cCCHHHHHHhcCEEE--ecCCCCCC----
Q 017085 213 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK----------TLTVAPYLAAIDVLV--QNSQAWGE---- 276 (377)
Q Consensus 213 ~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~----------~~~~~~~~~~adv~l--~ps~~~~e---- 276 (377)
-.+-++-|+|-| ..-..+.+.++.+|.. |....+ ..++.++++.||+++ +|.. .+
T Consensus 114 L~gktvGIIG~G-----~IG~~vA~~l~a~G~~--V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt--~~g~~~ 184 (378)
T PRK15438 114 LHDRTVGIVGVG-----NVGRRLQARLEALGIK--TLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLF--KDGPYK 184 (378)
T ss_pred cCCCEEEEECcC-----HHHHHHHHHHHHCCCE--EEEECCcccccccccccCCHHHHHhhCCEEEEeCCCC--CCcccc
Confidence 356788899998 5677888888888763 544431 145889999999988 5654 32
Q ss_pred c---cchHHHHHHHcCCcEEEeCCC
Q 017085 277 C---FGRITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 277 ~---~~~~~~Ea~a~g~PvI~s~~~ 298 (377)
+ ++-..++.|--|.-+|-+.-|
T Consensus 185 T~~li~~~~l~~mk~gailIN~aRG 209 (378)
T PRK15438 185 TLHLADEKLIRSLKPGAILINACRG 209 (378)
T ss_pred cccccCHHHHhcCCCCcEEEECCCc
Confidence 3 344566666666656554333
No 351
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=36.91 E-value=46 Score=24.32 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=28.2
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc-----------cchhHHHhhhcccEEEEc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----------KGQETINTALKADLIVLN 64 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~Div~~~ 64 (377)
++++.|.+.|+++. +..+. ...+...|+.+... ..+...++..++|+|+..
T Consensus 17 ~~a~~l~~~G~~i~--aT~gT----------a~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~ 78 (116)
T cd01423 17 PTAQKLSKLGYKLY--ATEGT----------ADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINL 78 (116)
T ss_pred HHHHHHHHCCCEEE--EccHH----------HHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEEC
Confidence 46778888888774 22221 22233344433211 335556667888888875
No 352
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=36.66 E-value=2.1e+02 Score=26.45 Aligned_cols=102 Identities=9% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
.++.+.+..++..+..-...+++.+ ++ +++++++++.-.... -.+...+ ..+-...+.+.+..
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l-------~~---~~~~~~i~~t~~t~~----~~~~~~~---~~~~~~~~~~~P~d 111 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRAL-------RK---RYPDLPILVTTMTPT----GSERAQA---LFGDDVEHRYLPYD 111 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHH-------HH---hCCCCcEEEeCCCcc----HHHHHHH---hcCCCceEEEecCC
Confidence 3455666666666433333333332 22 347777766543321 1121211 11111224444432
Q ss_pred --CCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 255 --LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 255 --~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
..+..+++. -|+++.-. .+.++..+..+-..|+|++..+
T Consensus 112 ~~~~~~~~l~~~~Pd~v~~~~---~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 112 LPGAVRRFLRFWRPKLVIIME---TELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred cHHHHHHHHHhhCCCEEEEEe---cchhHHHHHHHHHCCCCEEEEe
Confidence 234455543 47776543 4567777778888999998864
No 353
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=36.63 E-value=2.8e+02 Score=23.97 Aligned_cols=145 Identities=15% Similarity=0.064 Sum_probs=67.6
Q ss_pred eEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCC-eEEEEEecCCCcccHHHHHHHHHHHhcCCCCc-EEEecCcC
Q 017085 178 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNAQTKFESELRNYVMQKKIQDR-VHFVNKTL 255 (377)
Q Consensus 178 ~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~-~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~-v~~~g~~~ 255 (377)
..++.++.-.+.|.++.+++.++ +.|+ +.+-..|.|. ...-....+.+..|++-+ |.+-|..+
T Consensus 79 ~~vl~v~~dsp~~t~~eli~~ak-----------~~p~~~~~g~~g~g~----~~hl~~~~l~~~~G~~~~~Vpy~G~~~ 143 (274)
T PF03401_consen 79 PNVLVVRADSPYKTLEELIEYAK-----------ANPGKLTFGSSGPGS----SDHLAAALLAKAAGIKFTHVPYDGGAE 143 (274)
T ss_dssp EEEEEEETTSS-SSHHHHHHHHH-----------CSCCC-EEEESSTTS----HHHHHHHHHHHHHT---EEEE-SSHHH
T ss_pred ceEEEEeCCCccccHHHHHHHHH-----------hCCCCeEEEecCCCc----hHHHHHHHHHHHhCCceEEEEeCCccH
Confidence 34556777788899999988775 2233 4433333332 112222344556676422 22323224
Q ss_pred CHHHHHH-hcCEEEecCCCCCCccchHHHHHHHcCCc-EE-Ee---------CCCC-----cccceecCcceeeecCCCC
Q 017085 256 TVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLP-VL-GT---------AAGG-----TTEIVVNGTTGLLHPVGKE 318 (377)
Q Consensus 256 ~~~~~~~-~adv~l~ps~~~~e~~~~~~~Ea~a~g~P-vI-~s---------~~~~-----~~e~~~~~~~g~~~~~~~~ 318 (377)
-+.+++. ..|+.+... .........|.- ++ ++ +++. .+++....-.|++.+.+-+
T Consensus 144 ~~~allgG~vd~~~~~~--------~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gtp 215 (274)
T PF03401_consen 144 ALTALLGGHVDAAFGSP--------GEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGTP 215 (274)
T ss_dssp HHHHHHTTSSSEEEEEH--------HHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS-
T ss_pred HHHHHhCCeeeEEeecH--------HHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCCC
Confidence 4555553 356654321 123444445532 12 11 2222 2222223345777776651
Q ss_pred --ChhHHHHHHHHHhhCHHHHHHHHHHHH
Q 017085 319 --GITPLAKNIVKLATHVERRLTMGKRGY 345 (377)
Q Consensus 319 --~~~~la~~i~~l~~~~~~~~~~~~~~~ 345 (377)
-.+.|.+++.+.++|++..+.+.+.+.
T Consensus 216 ~~~~~~l~~a~~~~~~~pe~~~~~~~~g~ 244 (274)
T PF03401_consen 216 DEIVDKLADAIKKALEDPEFQEFLEKMGL 244 (274)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHTE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 134566777777788987776666543
No 354
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=36.57 E-value=12 Score=35.74 Aligned_cols=19 Identities=32% Similarity=0.197 Sum_probs=15.6
Q ss_pred cHhhHHHhcCceEEEEEec
Q 017085 2 ELAFLLRGVGTKVNWITIQ 20 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~ 20 (377)
.++++|.++||+||++++.
T Consensus 18 ~l~~~L~~rGH~VTvl~~~ 36 (500)
T PF00201_consen 18 PLAEELAERGHNVTVLTPS 36 (500)
T ss_dssp HHHHHHHHH-TTSEEEHHH
T ss_pred HHHHHHHhcCCceEEEEee
Confidence 4789999999999999853
No 355
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=36.54 E-value=3e+02 Score=24.29 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=51.9
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC
Q 017085 165 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 244 (377)
Q Consensus 165 ~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 244 (377)
-.+++.+|- -+...|.++|-..+..=...++.+++. -++.+.++++..-. ..+++.+.+++.|.
T Consensus 139 ~Ti~e~~g~-l~g~~va~vGD~~~~~v~~Sl~~~~a~------------~g~~v~~~~P~~~~---~~~~~~~~~~~~G~ 202 (301)
T TIGR00670 139 YTIYEEFGR-LDGLKIALVGDLKYGRTVHSLAEALTR------------FGVEVYLISPEELR---MPKEILEELKAKGI 202 (301)
T ss_pred HHHHHHhCC-CCCCEEEEEccCCCCcHHHHHHHHHHH------------cCCEEEEECCcccc---CCHHHHHHHHHcCC
Confidence 445666763 355788999954333334445555443 35889999874321 12344455555442
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
.+.+. +++.+.++.||++...+.
T Consensus 203 --~v~~~---~d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 203 --KVRET---ESLEEVIDEADVLYVTRI 225 (301)
T ss_pred --EEEEE---CCHHHHhCCCCEEEECCc
Confidence 34332 678899999998877553
No 356
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=36.50 E-value=62 Score=32.22 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=36.7
Q ss_pred hhHHHhcCceEE-EEEecCCCcchhHhhhhhhhhcccCceEEEccch-----hHHHhhhcccEEEEcC
Q 017085 4 AFLLRGVGTKVN-WITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-----ETINTALKADLIVLNT 65 (377)
Q Consensus 4 a~~L~~~G~eV~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Div~~~~ 65 (377)
.+.|.+.||+|. |+|....+........+.....+.|++++..... ...++..+||++++..
T Consensus 16 l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~~~~D~iv~~~ 83 (660)
T PRK08125 16 IEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRELAPDVIFSFY 83 (660)
T ss_pred HHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhcCCCEEEEcc
Confidence 356777899999 5553322211111113445566678888764432 3446678999998754
No 357
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=36.41 E-value=1.3e+02 Score=24.97 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=50.5
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCCC-eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCE
Q 017085 190 KGQDLFLHSFYESLELIKEKKLEVPS-VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDV 266 (377)
Q Consensus 190 Kg~~~ll~a~~~l~~~l~~~~~~~~~-~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv 266 (377)
.+++..++.+.+.. .+ +.+..= .. +...++.+++++.|..--+.+-+.. +.+..++...|+
T Consensus 71 ~~p~~~i~~fa~ag----------ad~It~H~E-~~-----~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~ 134 (220)
T COG0036 71 ENPDRYIEAFAKAG----------ADIITFHAE-AT-----EHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDL 134 (220)
T ss_pred CCHHHHHHHHHHhC----------CCEEEEEec-cC-----cCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCE
Confidence 45688888887531 23 333322 22 3568888999999988778887764 778899999999
Q ss_pred EEecCCCCCCccc
Q 017085 267 LVQNSQAWGECFG 279 (377)
Q Consensus 267 ~l~ps~~~~e~~~ 279 (377)
+++-|. .-|||
T Consensus 135 VllMsV--nPGfg 145 (220)
T COG0036 135 VLLMSV--NPGFG 145 (220)
T ss_pred EEEEeE--CCCCc
Confidence 887776 45554
No 358
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.00 E-value=2.4e+02 Score=24.73 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=35.4
Q ss_pred HhcCEEEecCCCCCCccchHHH-HHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 262 AAIDVLVQNSQAWGECFGRITI-EAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 262 ~~adv~l~ps~~~~e~~~~~~~-Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
..+|+++.-. .+|.=+... .+.-.++|++.-+.| ..||+.+.. ++++.+++.+++++
T Consensus 63 ~~~Dlvi~iG---GDGT~L~aa~~~~~~~~PilGIN~G---------~lGFLt~~~---~~~~~~~l~~i~~g 120 (287)
T PRK14077 63 KISDFLISLG---GDGTLISLCRKAAEYDKFVLGIHAG---------HLGFLTDIT---VDEAEKFFQAFFQG 120 (287)
T ss_pred cCCCEEEEEC---CCHHHHHHHHHhcCCCCcEEEEeCC---------CcccCCcCC---HHHHHHHHHHHHcC
Confidence 4678877433 233212222 223357899988754 467887653 78888999888764
No 359
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=35.96 E-value=3e+02 Score=24.03 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=30.0
Q ss_pred CCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH--cCCcEEEe
Q 017085 255 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPVLGT 295 (377)
Q Consensus 255 ~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a--~g~PvI~s 295 (377)
.++.+.+. .+|+++-.|.. ...|.--+++.|+ +..|+|-.
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~-~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGV-GGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCC-CCCCCHHHHHHHHhcCCCCEEEE
Confidence 35777777 78999987752 4568888999998 57888854
No 360
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=35.93 E-value=53 Score=28.38 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=17.4
Q ss_pred cHhhHHHhcCceEEEEEecCC
Q 017085 2 ELAFLLRGVGTKVNWITIQKP 22 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~ 22 (377)
.|...|.+.||+|++++....
T Consensus 13 ~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 13 ALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred HHHHHHHhCCCeEEEEEcCCc
Confidence 467889999999999996654
No 361
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=35.89 E-value=1.2e+02 Score=22.14 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV 257 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~ 257 (377)
-.+++.|+|+-+.. ...+.+++++.+.+-...+.|....++.
T Consensus 68 Y~iklAivGD~s~~--~~S~~l~dfi~EsN~G~~~~F~~~~~eA 109 (113)
T PF13788_consen 68 YRIKLAIVGDFSAY--ATSKSLRDFIYESNRGNHFFFVPDEEEA 109 (113)
T ss_pred hceeEEEEEccccc--ccchhHHHHHHHhcCCCeEEEECCHHHH
Confidence 57999999996532 1367888998888777788888765443
No 362
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=35.40 E-value=1.4e+02 Score=23.67 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=7.9
Q ss_pred ccEEEEcCchh
Q 017085 58 ADLIVLNTAVA 68 (377)
Q Consensus 58 ~Div~~~~~~~ 68 (377)
.|++|+....+
T Consensus 58 ~~~v~i~~~~~ 68 (196)
T cd00287 58 ADAVVISGLSP 68 (196)
T ss_pred ccEEEEecccC
Confidence 78888877543
No 363
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.27 E-value=2.2e+02 Score=22.43 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=61.4
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC
Q 017085 165 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 244 (377)
Q Consensus 165 ~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 244 (377)
+.+++.++.+....+++++|. ...|-|-+. +++.| .+ ...++.+++++...... +....-.+.+++.+.
T Consensus 14 ~~i~~~~~~~~~~~v~il~G~--GnNGgDgl~-~AR~L----~~---~G~~V~v~~~~~~~~~~-~~~~~~~~~~~~~g~ 82 (169)
T PF03853_consen 14 ELIRKLFGSPKGPRVLILCGP--GNNGGDGLV-AARHL----AN---RGYNVTVYLVGPPEKLS-EDAKQQLEILKKMGI 82 (169)
T ss_dssp HHHHHHSTCCTT-EEEEEE-S--SHHHHHHHH-HHHHH----HH---TTCEEEEEEEESSSSTS-HHHHHHHHHHHHTT-
T ss_pred HHHHHHhcccCCCeEEEEECC--CCChHHHHH-HHHHH----HH---CCCeEEEEEEeccccCC-HHHHHHHHHHHhcCC
Confidence 345566644566677778884 456666554 44433 33 22556666677754433 344444555666653
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEecCCCCCCcc-------chHHH-HHHHcCCcEEEeCCC
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECF-------GRITI-EAMAFQLPVLGTAAG 298 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~-------~~~~~-Ea~a~g~PvI~s~~~ 298 (377)
.+.......+....+..+|++|-.-. .-|+ -..++ ..=..+.|||+-|.+
T Consensus 83 --~~~~~~~~~~~~~~~~~~dlIIDal~--G~G~~~~l~~~~~~~i~~iN~~~~~viAiDiP 140 (169)
T PF03853_consen 83 --KIIELDSDEDLSEALEPADLIIDALF--GTGFSGPLRGPIAELIDWINASRAPVIAIDIP 140 (169)
T ss_dssp --EEESSCCGSGGGHHGSCESEEEEES---STTGGSCGSTCHHHHHHHHHHHCSEEEEESS-
T ss_pred --cEeeccccchhhcccccccEEEEecc--cCCCCCCcCHHHHHHHHHHhccCCcEEEecCC
Confidence 22222223445555668999884332 1111 12222 334568999999865
No 364
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=35.22 E-value=1.5e+02 Score=21.16 Aligned_cols=74 Identities=11% Similarity=0.156 Sum_probs=42.3
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHH--HcCCcEEEe
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM--AFQLPVLGT 295 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~--a~g~PvI~s 295 (377)
+++++.|.+.. =.....++.+++.|.+-.|.-. ...++.+++..+|++++.-. -.|-..-+|-. -.|+||-+-
T Consensus 5 lLvC~aGmSTS-lLV~Km~~aA~~kg~~~~I~A~-s~~e~~~~~~~~DvvLlGPQ---v~y~~~~~~~~~~~~giPV~vI 79 (102)
T COG1440 5 LLVCAAGMSTS-LLVTKMKKAAESKGKDVTIEAY-SETELSEYIDNADVVLLGPQ---VRYMLKQLKEAAEEKGIPVEVI 79 (102)
T ss_pred EEEecCCCcHH-HHHHHHHHHHHhCCCceEEEEe-chhHHHHhhhcCCEEEEChH---HHHHHHHHHHHhcccCCCeEEe
Confidence 34455554332 3567777888877765322222 23788999999999886432 12223333333 345688776
Q ss_pred C
Q 017085 296 A 296 (377)
Q Consensus 296 ~ 296 (377)
+
T Consensus 80 ~ 80 (102)
T COG1440 80 D 80 (102)
T ss_pred C
Confidence 5
No 365
>PRK06683 hypothetical protein; Provisional
Probab=35.06 E-value=1.5e+02 Score=20.24 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=26.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV 257 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~ 257 (377)
...+++|+....+. ...+.+..+++..+++ +...+...+|
T Consensus 26 gkaklViiA~Da~~--~~~~~i~~~~~~~~Vp--v~~~~t~~eL 65 (82)
T PRK06683 26 GIVKEVVIAEDADM--RLTHVIIRTALQHNIP--ITKVESVRKL 65 (82)
T ss_pred CCeeEEEEECCCCH--HHHHHHHHHHHhcCCC--EEEECCHHHH
Confidence 57888888765432 4678888888988876 4444433444
No 366
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=34.81 E-value=1.9e+02 Score=21.51 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=40.1
Q ss_pred cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccc
Q 017085 247 RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI 303 (377)
Q Consensus 247 ~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~ 303 (377)
.|.+.... +++.+.+..+|+++..+. ..+.-.+++++ -++-.|++...|...+
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~---~~~~~~~l~~~-~~Lk~I~~~~~G~d~i 74 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSG---TPLTAEVLEAA-PNLKLISTAGAGVDNI 74 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTT---STBSHHHHHHH-TT-SEEEESSSSCTTB
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCC---CCcCHHHHhcc-ceeEEEEEcccccCcc
Confidence 57777754 678899999999997653 24777888888 8999999988777654
No 367
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=34.77 E-value=2.9e+02 Score=23.58 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=56.9
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCC-cEEEecCc--CCHHHHHHh
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT--LTVAPYLAA 263 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~g~~--~~~~~~~~~ 263 (377)
+-.|-.+.|..|+.-+.. +.+ .-.++++|... ....-+++.+...|-.. +=.|+|.. +.....+..
T Consensus 50 dL~kT~~~L~~Aa~~i~~-i~~------~~~Il~Vstr~----~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~ 118 (249)
T PTZ00254 50 NLAKTWEKLKLAARVIAA-IEN------PADVVVVSSRP----YGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFME 118 (249)
T ss_pred cHHHHHHHHHHHHHHHHH-HhC------CCcEEEEEcCH----HHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCC
Confidence 344656666666655433 322 23466777763 23445566666554321 11355532 333344455
Q ss_pred cCEEEecCCCCCCccchHHHHHHHcCCcEEEe-CCCCcccce
Q 017085 264 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIV 304 (377)
Q Consensus 264 adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s-~~~~~~e~~ 304 (377)
=|++++.. ...-...+.||...|+|||+- |+-...+.+
T Consensus 119 P~llIV~D---p~~d~qAI~EA~~lnIPvIal~DTds~p~~V 157 (249)
T PTZ00254 119 PRLLIVTD---PRTDHQAIREASYVNIPVIALCDTDSPLEYV 157 (249)
T ss_pred CCEEEEeC---CCcchHHHHHHHHhCCCEEEEecCCCCcccC
Confidence 56666543 233467899999999999986 444444444
No 368
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=34.69 E-value=2e+02 Score=22.87 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=44.3
Q ss_pred CeEEEEEecCC-CcccHHHHHHHHHHHhcCCCCcEEEe--------cCc-------CCHHHHHHhcCEEEecCCCC-CCc
Q 017085 215 SVHAVIIGSDM-NAQTKFESELRNYVMQKKIQDRVHFV--------NKT-------LTVAPYLAAIDVLVQNSQAW-GEC 277 (377)
Q Consensus 215 ~~~l~i~G~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~--------g~~-------~~~~~~~~~adv~l~ps~~~-~e~ 277 (377)
..++.+.|+-. ++.-...+++++++.+.|.....-+. +.. +.=...+..||++|..-... .+.
T Consensus 4 ~~~IYLAGP~F~~~~i~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr~~~ 83 (172)
T COG3613 4 KKKIYLAGPVFRPDEIELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFRPDP 83 (172)
T ss_pred cceEEEecCcCCHHHHHHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCCCCC
Confidence 35667777732 12223456667777776653211100 110 01125678899887532210 334
Q ss_pred cchHHHH---HHHcCCcEEEeC
Q 017085 278 FGRITIE---AMAFQLPVLGTA 296 (377)
Q Consensus 278 ~~~~~~E---a~a~g~PvI~s~ 296 (377)
=+.+..| |.|.|+||++..
T Consensus 84 DsGTa~E~GYa~AlgKPv~~~~ 105 (172)
T COG3613 84 DSGTAFELGYAIALGKPVYAYR 105 (172)
T ss_pred CCcchHHHHHHHHcCCceEEEe
Confidence 3456666 679999999875
No 369
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=34.63 E-value=57 Score=23.70 Aligned_cols=51 Identities=20% Similarity=0.118 Sum_probs=29.5
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc--------cchhHHHhh-hcccEEEEc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--------KGQETINTA-LKADLIVLN 64 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~Div~~~ 64 (377)
++++.|.+.||++. .|... ...+...|+++... +.....++. .++|+|+..
T Consensus 16 ~~a~~l~~~G~~i~-AT~gT-----------a~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~ 75 (112)
T cd00532 16 DLAPKLSSDGFPLF-ATGGT-----------SRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINL 75 (112)
T ss_pred HHHHHHHHCCCEEE-ECcHH-----------HHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEc
Confidence 46778888888773 22221 22334456654321 235566677 788888775
No 370
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=34.63 E-value=4.3e+02 Score=25.50 Aligned_cols=165 Identities=12% Similarity=0.055 Sum_probs=86.7
Q ss_pred ccceeeeeccc-hhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecccc
Q 017085 109 LVAGAMIDSHV-TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 187 (377)
Q Consensus 109 ~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~ 187 (377)
.-|-++|-|+. ..+..+++.....+++.+.+.-.++ .+.....+.....+.-.+.+.++++++..
T Consensus 204 ~pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~vi~~~d---~~~iY~vPl~l~~q~~~~~i~~~l~l~~~----------- 269 (525)
T TIGR00337 204 QPDIIICRSSEPLDPSTKDKIALFCDVEEEAVINAHD---VSSIYEVPLLLLKQGLDDYLCRRLNLNCD----------- 269 (525)
T ss_pred CCCEEEEecCCCCCHHHHHHHHhccCCCHHHEEEcCC---CccHhhhhHHHHHCChHHHHHHHhCCCCC-----------
Confidence 45777777754 3455555555555666665555544 33222222222333445667788887531
Q ss_pred ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCc----EEEecCcCCH----HH
Q 017085 188 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR----VHFVNKTLTV----AP 259 (377)
Q Consensus 188 ~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~----v~~~g~~~~~----~~ 259 (377)
..+ +..|..+.+++++. ...+++-++|.-.+....| ..+.+.+...+...+ +.++.. +++ .+
T Consensus 270 -~~~----~~~W~~~~~~~~~~---~~~v~IalVGKY~~~~daY-~SI~eAL~~ag~~~~~~V~~~~i~s-e~i~~~~~~ 339 (525)
T TIGR00337 270 -EAD----LSEWEELVEKFINP---KHEVTIGIVGKYVELKDSY-LSVIEALKHAGAKLDTKVNIKWIDS-EDLEEEGAE 339 (525)
T ss_pred -CCc----HHHHHHHHHHhhCC---CCCcEEEEEeCCcCCHHHH-HHHHHHHHhCccccCCEEEEEEecH-HHhhhhhhh
Confidence 111 24444444444431 1358888999954433334 555555555554322 223332 222 24
Q ss_pred HHHhcCEEEecCCCCC---CccchHHHHHHHcCCcEEEeCC
Q 017085 260 YLAAIDVLVQNSQAWG---ECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 260 ~~~~adv~l~ps~~~~---e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
.+..+|.+++|.-+.. ++.-..+-.+...++|+++.-.
T Consensus 340 ~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGICl 380 (525)
T TIGR00337 340 FLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICL 380 (525)
T ss_pred hhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcH
Confidence 5778999888764201 2222234456678999997643
No 371
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=34.61 E-value=1.3e+02 Score=26.38 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=23.7
Q ss_pred CeEEEEeccccccchhHHHHHHHHHHHHHHhhhc
Q 017085 177 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 210 (377)
Q Consensus 177 ~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~ 210 (377)
++++..++ ...+|++.|.+++....+.+.+.|
T Consensus 229 ppv~~t~A--~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 229 PPVVTTSA--LEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred CceeEeee--ccCCCHHHHHHHHHHHHHHHHhcc
Confidence 35666655 345699999999999888776643
No 372
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=34.48 E-value=3e+02 Score=23.62 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=29.1
Q ss_pred CCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH--cCCcEEEe
Q 017085 255 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPVLGT 295 (377)
Q Consensus 255 ~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a--~g~PvI~s 295 (377)
.++.+.+. ..|+++-.|.. ...|.--++++|+ +..|+|-.
T Consensus 96 ~~L~eav~~~kptvlIG~S~~-~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRV-GGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCC-CCCCCHHHHHHHhhcCCCCEEEE
Confidence 35777777 88999876652 4557778888988 56788854
No 373
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=34.33 E-value=2.6e+02 Score=22.89 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=46.0
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
.+.|--+..-+|+..+.+.+++.+ |.....+.+...+..+.....+++.+++.+++.++......
T Consensus 104 gkyk~~E~t~~Al~lil~~lk~~~---~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~lvk~~ 168 (211)
T COG2454 104 GKYKINEKTDKALDLLLEFLKDVE---PKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASLVKNA 168 (211)
T ss_pred cchhhhhHHHHHHHHHHHHHHHcC---CceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEeccCc
Confidence 455666666677776666777643 66566666766555667888999999999998888777654
No 374
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=33.88 E-value=1e+02 Score=28.57 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=39.4
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccch------hHHH--hhhcccEEEEcCc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------ETIN--TALKADLIVLNTA 66 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~Div~~~~~ 66 (377)
.|++.|...|-+|.|.+.+..+..+... ..+...|++++..+.. ..+. ...+||+|+=...
T Consensus 47 ~l~~~L~~~GA~v~~~~~np~stqd~va----aaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~p~~iiDdGg 115 (406)
T TIGR00936 47 VLIETLVAGGAEVAWTSCNPLSTQDDVA----AALAKAGIPVFAWRGETNEEYYWAIEQVLDHEPNIIIDDGA 115 (406)
T ss_pred HHHHHHHHcCCEEEEEccCCccccHHHH----HHHHhCCceEEEecCCCHHHHHHHHHHHhcCCCCEEEeccc
Confidence 3788999999999999877655444433 4455679999864411 1111 1357888876544
No 375
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=33.23 E-value=3.1e+02 Score=23.50 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=51.1
Q ss_pred cCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-----CcEEEecC---------------------c------CCHHH
Q 017085 212 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-----DRVHFVNK---------------------T------LTVAP 259 (377)
Q Consensus 212 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-----~~v~~~g~---------------------~------~~~~~ 259 (377)
...+.+++++|.|.-.- ...+.+...+.+.|++ .++.+... . .++.+
T Consensus 22 ~l~d~riv~~GAGsAg~-gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~e 100 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGI-GIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLE 100 (255)
T ss_dssp -GGG-EEEEEB-SHHHH-HHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHH
T ss_pred CHHHcEEEEeCCChhHH-HHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHH
Confidence 34688999999983211 1233444444444885 67766641 0 26788
Q ss_pred HHHhc--CEEEecCCCCCCccchHHHHHHHc--CCcEEEe
Q 017085 260 YLAAI--DVLVQNSQAWGECFGRITIEAMAF--QLPVLGT 295 (377)
Q Consensus 260 ~~~~a--dv~l~ps~~~~e~~~~~~~Ea~a~--g~PvI~s 295 (377)
.++.+ |+++-.|.. ...|.--++++|+. ..|+|-.
T Consensus 101 av~~~kPtvLIG~S~~-~g~ft~evv~~Ma~~~erPIIF~ 139 (255)
T PF03949_consen 101 AVKGAKPTVLIGLSGQ-GGAFTEEVVRAMAKHNERPIIFP 139 (255)
T ss_dssp HHHCH--SEEEECSSS-TTSS-HHHHHHCHHHSSSEEEEE
T ss_pred HHHhcCCCEEEEecCC-CCcCCHHHHHHHhccCCCCEEEE
Confidence 88888 999988842 67788889999975 5788854
No 376
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=33.20 E-value=1.6e+02 Score=23.93 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCC---------CccchHHHHHHHcCCcEEEeCC
Q 017085 231 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG---------ECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 231 ~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~---------e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
....+...++.+|.+ +.+....++ +..+|.+++|.-... .+....+.++...|+|+++.-.
T Consensus 11 n~~~~~~~l~~~g~~--v~~~~~~~~----l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~ 80 (199)
T PRK13181 11 NLRSVANALKRLGVE--AVVSSDPEE----IAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICL 80 (199)
T ss_pred hHHHHHHHHHHCCCc--EEEEcChHH----hccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECH
Confidence 345666677777754 555543222 356888888874100 1233446677789999998743
No 377
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=33.15 E-value=3.6e+02 Score=24.22 Aligned_cols=52 Identities=15% Similarity=0.436 Sum_probs=35.9
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-CcEEEec
Q 017085 186 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVN 252 (377)
Q Consensus 186 ~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~g 252 (377)
+....+++.+++++....+ +.+.++++++|+. +.+++.+.+.++. +++.+..
T Consensus 9 mGgD~~p~~vl~aa~~a~~-------~~~~~~~iLvG~~--------~~I~~~l~~~~~~~~~~~Iv~ 61 (334)
T PRK05331 9 MGGDFGPEVVVPGALQALK-------EHPDLEIILVGDE--------EKIKPLLAKKPDLKERIEIVH 61 (334)
T ss_pred CCCccCHHHHHHHHHHHHh-------cCCCeEEEEEeCH--------HHHHHHHHhcCCCcCCcEEEe
Confidence 4467889999999887654 3357999999984 5666776666542 3455554
No 378
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=32.97 E-value=38 Score=14.32 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=7.3
Q ss_pred HHHHHHHcCC
Q 017085 281 ITIEAMAFQL 290 (377)
Q Consensus 281 ~~~Ea~a~g~ 290 (377)
+++||+..|.
T Consensus 5 sllealqtg~ 14 (15)
T PF06345_consen 5 SLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHccC
Confidence 5788887774
No 379
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=32.95 E-value=3.7e+02 Score=24.21 Aligned_cols=102 Identities=12% Similarity=-0.016 Sum_probs=58.6
Q ss_pred EeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc---------ccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 182 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 182 ~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~---------~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
.+| -+.-...+.+++.+..+++. ..++...|.-.+. ..+-.+.+.+.+++.|++--..+..
T Consensus 97 IAG-PCsiEs~e~~~~~A~~lk~~---------ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~d 166 (335)
T PRK08673 97 IAG-PCSVESEEQILEIARAVKEA---------GAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEVMD 166 (335)
T ss_pred EEe-cCccCCHHHHHHHHHHHHHh---------chhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 455 34455677888888876541 2222221110000 0123566778888999873333333
Q ss_pred CcCCHHHHHHhcCEEEecCCCCCCccchHHH-HHHHcCCcEEEeCC
Q 017085 253 KTLTVAPYLAAIDVLVQNSQAWGECFGRITI-EAMAFQLPVLGTAA 297 (377)
Q Consensus 253 ~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~-Ea~a~g~PvI~s~~ 297 (377)
. .++..+...+|++-.+|. +.....++ ++...|+||+.+.-
T Consensus 167 ~-~~~~~l~~~vd~lqIgAr---~~~N~~LL~~va~~~kPViLk~G 208 (335)
T PRK08673 167 P-RDVELVAEYVDILQIGAR---NMQNFDLLKEVGKTNKPVLLKRG 208 (335)
T ss_pred H-HHHHHHHHhCCeEEECcc---cccCHHHHHHHHcCCCcEEEeCC
Confidence 2 445445556899999997 33334444 66678999998863
No 380
>PRK09581 pleD response regulator PleD; Reviewed
Probab=32.91 E-value=4e+02 Score=24.60 Aligned_cols=107 Identities=10% Similarity=0.051 Sum_probs=59.4
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc-----C
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF-----Q 289 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~-----g 289 (377)
+++++.+.. .....+.......+. .+.......+....+. ..|++++...- ...-|..+++.+.. .
T Consensus 4 ~ilii~~~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~d~~~-~~~~g~~l~~~i~~~~~~~~ 76 (457)
T PRK09581 4 RILVVDDIP----ANVKLLEAKLLAEYY--TVLTASSGAEAIAICEREQPDIILLDVMM-PGMDGFEVCRRLKSDPATTH 76 (457)
T ss_pred eEEEEeCCH----HHHHHHHHHHHhCCC--EEEEeCCHHHHHHHHhhcCCCEEEEeCCC-CCCCHHHHHHHHHcCcccCC
Confidence 455555542 234445455444332 2333222233334443 25777765441 34456777777753 5
Q ss_pred CcEEEeCC-CC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGTAA-GG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s~~-~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|+... +. ..+.+..|..+++..+.+ .+++...+..++.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~--~~~l~~~i~~~~~ 121 (457)
T PRK09581 77 IPVVMVTALDDPEDRVRGLEAGADDFLTKPIN--DVALFARVKSLTR 121 (457)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Confidence 77776532 22 223344577889998887 8999998887764
No 381
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=32.89 E-value=2.4e+02 Score=24.79 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=25.5
Q ss_pred HHHHHHhcCEEEecCCCCC-----------Ccc--chHHHHHHHcCCcEEEeC
Q 017085 257 VAPYLAAIDVLVQNSQAWG-----------ECF--GRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 257 ~~~~~~~adv~l~ps~~~~-----------e~~--~~~~~Ea~a~g~PvI~s~ 296 (377)
..+.+..||++++|..... +.. ....++.|--|..+++..
T Consensus 49 ~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~~G~ 101 (296)
T PRK08306 49 LEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIFSGI 101 (296)
T ss_pred HHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEEEec
Confidence 4567899999998832100 111 235788888897677543
No 382
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=32.54 E-value=2.6e+02 Score=23.02 Aligned_cols=100 Identities=13% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEEEecCCC--------CCCccchHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQA--------WGECFGRITIE 284 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~l~ps~~--------~~e~~~~~~~E 284 (377)
-+..+.+.|.|.|.. ...+--..+.++-|..-+|++ |++ .=....=..||++.-.|.+ ..+.|+..-++
T Consensus 19 ~~adinlYGpGGPht-aL~~vA~~~~ektg~kVnvt~-GPq~tW~~kAkknADilfgaseqsalaia~~~~~~fs~~~i~ 96 (252)
T COG4588 19 ANADINLYGPGGPHT-ALKDVAKKYEEKTGIKVNVTA-GPQATWNEKAKKNADILFGASEQSALAIAEDHKDSFSEKNIQ 96 (252)
T ss_pred hcceEEEecCCCCcH-HHHHHHHHHHHHhCeEEEEec-CCcchhhhhhhccCceeecccHHHHHHHHHhccccccccccc
Confidence 356777888877653 244444444455555433433 333 1122344577877755432 12334445555
Q ss_pred HHHcCCcEEEeCC------CCcccceecCcceeeecCC
Q 017085 285 AMAFQLPVLGTAA------GGTTEIVVNGTTGLLHPVG 316 (377)
Q Consensus 285 a~a~g~PvI~s~~------~~~~e~~~~~~~g~~~~~~ 316 (377)
-+.+.-.+|...- -++.+++.+| .|+++..+
T Consensus 97 ply~R~aiIlvkkgNPknIk~~eDll~~g-i~ivV~dG 133 (252)
T COG4588 97 PLYLRPAIILVKKGNPKNIKGFEDLLKPG-IGIVVNDG 133 (252)
T ss_pred eeeeeceEEEecCCCccccccHHHHhcCC-ceEEEeCC
Confidence 5555555665532 3556666544 56666543
No 383
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=32.47 E-value=2.7e+02 Score=23.57 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=44.0
Q ss_pred CCCeEEEEEecCCCcccHHHHHHH-HHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHH-HcCC
Q 017085 213 VPSVHAVIIGSDMNAQTKFESELR-NYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQL 290 (377)
Q Consensus 213 ~~~~~l~i~G~~~~~~~~~~~~l~-~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~-a~g~ 290 (377)
++++...++|.|....++..++.. +..++. .-|++++-|-+..-+.|...-|.+ +.|+
T Consensus 28 RedI~vrv~gsGaKm~pe~~e~~~~~~~~~~--------------------~pdf~I~isPN~~~PGP~~ARE~l~~~~i 87 (276)
T PF01993_consen 28 REDIDVRVVGSGAKMGPEDVEEVVTKMLKEW--------------------DPDFVIVISPNAAAPGPTKAREMLSAKGI 87 (276)
T ss_dssp -SSEEEEEEEEET--SHHHHHHHHHHHHHHH----------------------SEEEEE-S-TTSHHHHHHHHHHHHSSS
T ss_pred cCCceEEEeccCCCCCHHHHHHHHHHHHHhh--------------------CCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 378999999998654432222211 111222 335555444321444566677877 5899
Q ss_pred cEEE-eCCCCc--ccceecCcceeeecCCC
Q 017085 291 PVLG-TAAGGT--TEIVVNGTTGLLHPVGK 317 (377)
Q Consensus 291 PvI~-s~~~~~--~e~~~~~~~g~~~~~~~ 317 (377)
|+|+ ||.++. .+-+++.+-|+++-..|
T Consensus 88 P~IvI~D~p~~k~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 88 PCIVISDAPTKKAKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp -EEEEEEGGGGGGHHHHHHTT-EEEEETTS
T ss_pred CEEEEcCCCchhhHHHHHhcCCcEEEEecC
Confidence 9775 565543 34455667888877654
No 384
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=32.38 E-value=2e+02 Score=24.75 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~ 299 (377)
+++.+++..+|+++..+. .+...-...+++..|+.+++...+.
T Consensus 53 ~~~~ell~~~DvVvi~a~--~~~~~~~~~~al~~Gk~Vvv~s~gA 95 (265)
T PRK13304 53 LSIDELVEDVDLVVECAS--VNAVEEVVPKSLENGKDVIIMSVGA 95 (265)
T ss_pred CCHHHHhcCCCEEEEcCC--hHHHHHHHHHHHHcCCCEEEEchHH
Confidence 456666788999987765 4555555667889999999876543
No 385
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.33 E-value=2.2e+02 Score=21.46 Aligned_cols=14 Identities=7% Similarity=-0.505 Sum_probs=10.5
Q ss_pred CCeEEEEcCChhhh
Q 017085 137 PDTYVVHLGNSKEL 150 (377)
Q Consensus 137 ~~~~vi~ngi~~~~ 150 (377)
.-..|+.+|.+...
T Consensus 29 ~GfeVi~lg~~~s~ 42 (132)
T TIGR00640 29 LGFDVDVGPLFQTP 42 (132)
T ss_pred CCcEEEECCCCCCH
Confidence 34789999997653
No 386
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=32.25 E-value=2.1e+02 Score=22.70 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCCcEEEecCc---C---CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCccccee
Q 017085 232 ESELRNYVMQKKIQDRVHFVNKT---L---TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV 305 (377)
Q Consensus 232 ~~~l~~~~~~~~~~~~v~~~g~~---~---~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~ 305 (377)
.+-++.+.+-.....++-+.|+. . .+.+++ ..++...+..+ .+.....+.++...|+-+|+.+.... ++..
T Consensus 64 ~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll-~~~i~~~~~~~-~~e~~~~i~~~~~~G~~viVGg~~~~-~~A~ 140 (176)
T PF06506_consen 64 FDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL-GVDIKIYPYDS-EEEIEAAIKQAKAEGVDVIVGGGVVC-RLAR 140 (176)
T ss_dssp HHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH-T-EEEEEEESS-HHHHHHHHHHHHHTT--EEEESHHHH-HHHH
T ss_pred hHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh-CCceEEEEECC-HHHHHHHHHHHHHcCCcEEECCHHHH-HHHH
Confidence 34455554444556788888864 2 234444 45676666553 55677788899999999998875432 3332
Q ss_pred -cCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 306 -NGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 306 -~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.|-.+.++.++ .+.+..+|.+++.
T Consensus 141 ~~gl~~v~i~sg---~esi~~Al~eA~~ 165 (176)
T PF06506_consen 141 KLGLPGVLIESG---EESIRRALEEALR 165 (176)
T ss_dssp HTTSEEEESS-----HHHHHHHHHHHHH
T ss_pred HcCCcEEEEEec---HHHHHHHHHHHHH
Confidence 35566666654 6888888877653
No 387
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=32.17 E-value=87 Score=19.47 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=40.0
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
..+.+.|.... .....+.+++..+|- .+. .... ..++.++.+.. +. ......|...|+|+|..
T Consensus 2 ~~~~i~g~~~~---~~~~~l~~~i~~~Gg--~v~--~~~~------~~~thvI~~~~---~~-~~~~~~~~~~~~~iV~~ 64 (72)
T cd00027 2 LTFVITGDLPS---EERDELKELIEKLGG--KVT--SSVS------KKTTHVIVGSD---AG-PKKLLKAIKLGIPIVTP 64 (72)
T ss_pred CEEEEEecCCC---cCHHHHHHHHHHcCC--EEe--cccc------CCceEEEECCC---CC-chHHHHHHHcCCeEecH
Confidence 46777776421 357888999988874 222 1111 35677777654 21 22277888999999876
Q ss_pred C
Q 017085 296 A 296 (377)
Q Consensus 296 ~ 296 (377)
+
T Consensus 65 ~ 65 (72)
T cd00027 65 E 65 (72)
T ss_pred H
Confidence 4
No 388
>PRK13529 malate dehydrogenase; Provisional
Probab=32.16 E-value=4.9e+02 Score=25.37 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=28.3
Q ss_pred CHHHHHHhc--CEEEecCCCCCCccchHHHHHHHc--CCcEEEe
Q 017085 256 TVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAF--QLPVLGT 295 (377)
Q Consensus 256 ~~~~~~~~a--dv~l~ps~~~~e~~~~~~~Ea~a~--g~PvI~s 295 (377)
++.+.+..+ |+++-.|.. ...|.--++++|+. ..|+|-.
T Consensus 373 ~L~e~v~~~kPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFa 415 (563)
T PRK13529 373 SLLEVVRNVKPTVLIGVSGQ-PGAFTEEIVKEMAAHCERPIIFP 415 (563)
T ss_pred CHHHHHhccCCCEEEEecCC-CCCCCHHHHHHHHhcCCCCEEEE
Confidence 466777777 888877752 45677788899986 5777753
No 389
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=31.90 E-value=1.2e+02 Score=28.22 Aligned_cols=61 Identities=25% Similarity=0.413 Sum_probs=39.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccch------hHHH---hhhcccEEEEcCc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------ETIN---TALKADLIVLNTA 66 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~Div~~~~~ 66 (377)
.|++.|.+.|.+|.+.+++..+..+... ..+...|++++..+.. ..+. ...+||+|+=...
T Consensus 63 ~l~~~L~~~GA~v~~~~~np~Stqd~va----aaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~~p~iiiDdGg 132 (425)
T PRK05476 63 VLIETLKALGAEVRWASCNPFSTQDDVA----AALAAAGIPVFAWKGETLEEYWECIERALDGHGPNMILDDGG 132 (425)
T ss_pred HHHHHHHHcCCEEEEEeCCCcccCHHHH----HHHHHCCceEEecCCCCHHHHHHHHHHHhcCCCCCEEEeccc
Confidence 4788999999999999877655555444 3444569988775421 1111 1356777765543
No 390
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.84 E-value=2.6e+02 Score=22.16 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=29.6
Q ss_pred CeEEEEecccc--ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEec
Q 017085 177 DLLFAIINSVS--RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 223 (377)
Q Consensus 177 ~~~i~~~G~~~--~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~ 223 (377)
+.+++.+|.-+ .....+.+.+.+..+.+.+++. .++.++++++.
T Consensus 69 d~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~---~~~~~iiv~~~ 114 (191)
T cd01836 69 DVAVISIGVNDVTHLTSIARWRKQLAELVDALRAK---FPGARVVVTAV 114 (191)
T ss_pred CEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhh---CCCCEEEEECC
Confidence 45666666532 3345777888888888777763 37888888774
No 391
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=31.83 E-value=85 Score=21.90 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=31.8
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEE------cc---c----hhHHHhhhcccEEEEcC
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS------AK---G----QETINTALKADLIVLNT 65 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~----~~~~~~~~~~Div~~~~ 65 (377)
++|+.|.+.||++ +++.+ =...+.+.|+++.. .. . ....++..++|+|+...
T Consensus 4 ~~a~~l~~lG~~i--~AT~g----------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 4 PLAKRLAELGFEI--YATEG----------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp HHHHHHHHTTSEE--EEEHH----------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE-
T ss_pred HHHHHHHHCCCEE--EEChH----------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC
Confidence 5789999999654 44443 12444566776321 11 2 56777889999998875
No 392
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=31.79 E-value=65 Score=23.46 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=31.2
Q ss_pred CCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcc
Q 017085 255 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 301 (377)
Q Consensus 255 ~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~ 301 (377)
.++.+++. ..|++|=.+. .+...--+.+++..|+.||+.+.+.+.
T Consensus 49 ~~~~~~~~~~~~dvvVE~t~--~~~~~~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 49 TDLEELIDDPDIDVVVECTS--SEAVAEYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp SSHHHHHTHTT-SEEEE-SS--CHHHHHHHHHHHHTTCEEEES-HHHHH
T ss_pred CCHHHHhcCcCCCEEEECCC--chHHHHHHHHHHHCCCeEEEECHHHhh
Confidence 45666666 7999996655 566666677999999999998765433
No 393
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=31.57 E-value=1.2e+02 Score=24.91 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=13.5
Q ss_pred HhhHHHhcCceEEEEEecCC
Q 017085 3 LAFLLRGVGTKVNWITIQKP 22 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~ 22 (377)
.|++|...|++|+++...++
T Consensus 68 aAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 68 AARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred HHHHHHhCCCceEEEEeCCC
Confidence 46777777777777775543
No 394
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=31.24 E-value=4.1e+02 Score=24.21 Aligned_cols=95 Identities=13% Similarity=-0.014 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc---------ccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHH
Q 017085 190 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY 260 (377)
Q Consensus 190 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~---------~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (377)
..-+.+++.+..+.+ ..++++.-|.-.+. ..+....+.+.+++.|++--...... .++..+
T Consensus 129 E~~~~~~~~A~~lk~---------~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~-~~~~~l 198 (360)
T PRK12595 129 ESYEQVEAVAKALKA---------KGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISEIVNP-ADVEVA 198 (360)
T ss_pred cCHHHHHHHHHHHHH---------cCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCCH-HHHHHH
Confidence 345667777776543 34555555432211 11345678888899988622222222 455555
Q ss_pred HHhcCEEEecCCCCCCccchHHHHH-HHcCCcEEEeCC
Q 017085 261 LAAIDVLVQNSQAWGECFGRITIEA-MAFQLPVLGTAA 297 (377)
Q Consensus 261 ~~~adv~l~ps~~~~e~~~~~~~Ea-~a~g~PvI~s~~ 297 (377)
...+|++-.||. +..-..++++ ...|+||+.+.-
T Consensus 199 ~~~vd~lkI~s~---~~~n~~LL~~~a~~gkPVilk~G 233 (360)
T PRK12595 199 LDYVDVIQIGAR---NMQNFELLKAAGRVNKPVLLKRG 233 (360)
T ss_pred HHhCCeEEECcc---cccCHHHHHHHHccCCcEEEeCC
Confidence 556999999996 4444566655 457999998864
No 395
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=31.13 E-value=3.6e+02 Score=23.51 Aligned_cols=61 Identities=7% Similarity=0.142 Sum_probs=36.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-----CCHHHHHHhcCEEEecCCCCCCccchHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-----LTVAPYLAAIDVLVQNSQAWGECFGRITIE 284 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-----~~~~~~~~~adv~l~ps~~~~e~~~~~~~E 284 (377)
+.-.++++|++..+ + .++....-..++.=+|+. +.+..|+...|+++.--. .-..++.+++
T Consensus 210 ~~~~vI~vGDs~~D-------l-~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~--t~~v~~~il~ 275 (277)
T TIGR01544 210 DRSNIILLGDSQGD-------L-RMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDE--TLEVANSILQ 275 (277)
T ss_pred CcceEEEECcChhh-------h-hHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCC--CchHHHHHHh
Confidence 34578899998421 1 112222113477777875 347789999999997543 3334555543
No 396
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=31.08 E-value=71 Score=21.85 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=33.1
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
++++|.|.....-...++++...+.++...+..... .++...+..+|+++.+..
T Consensus 4 livC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~-~~~~~~~~~~Dliist~~ 57 (89)
T cd05566 4 LVACGTGVATSTVVASKVKELLKENGIDVKVEQCKI-AEVPSLLDDADLIVSTTK 57 (89)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecH-HHhhcccCCCcEEEEcCC
Confidence 456677654433356778888888877644544343 344445678998876554
No 397
>PRK06988 putative formyltransferase; Provisional
Probab=31.07 E-value=94 Score=27.56 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=38.1
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhH-hhhhhhhhcccCceEEEcc-----chhHHHhhhcccEEEEcC
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEV-IYSLEHKMWDRGVQVISAK-----GQETINTALKADLIVLNT 65 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Div~~~~ 65 (377)
..+.|.+.|++|..+.+..+.+.... .........+.|++++... .....++..+||++++..
T Consensus 17 ~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~~~~~Dliv~~~ 85 (312)
T PRK06988 17 CLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAAAAPDFIFSFY 85 (312)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHHhcCCCEEEEeh
Confidence 34677778999887765543322111 1123455556788886532 234456778999998764
No 398
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=30.94 E-value=56 Score=24.65 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=9.4
Q ss_pred HHHHHhhCHHHHHHHHHHH
Q 017085 326 NIVKLATHVERRLTMGKRG 344 (377)
Q Consensus 326 ~i~~l~~~~~~~~~~~~~~ 344 (377)
.|..+|..+....++++.+
T Consensus 85 nI~~~L~~R~~~~~lR~~G 103 (130)
T PF02639_consen 85 NIDELLAMRHLMAKLRRAG 103 (130)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4455555555555554443
No 399
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.80 E-value=3.5e+02 Score=23.34 Aligned_cols=53 Identities=17% Similarity=0.284 Sum_probs=35.3
Q ss_pred hcCEEEecCCCCCCccchHHHHHH---H---cCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 263 AIDVLVQNSQAWGECFGRITIEAM---A---FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 263 ~adv~l~ps~~~~e~~~~~~~Ea~---a---~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
.+|+++.-. .+| +++.|+ . .++|+++-+. |..||+.+.. ++++.+.+.++++.
T Consensus 35 ~~Dlvi~iG---GDG---T~L~a~~~~~~~~~~iPilGIN~---------G~lGFL~~~~---~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDIVISVG---GDG---TLLSAFHRYENQLDKVRFVGVHT---------GHLGFYTDWR---PFEVDKLVIALAKD 93 (265)
T ss_pred CCCEEEEEC---CcH---HHHHHHHHhcccCCCCeEEEEeC---------CCceecccCC---HHHHHHHHHHHHcC
Confidence 568777433 333 444443 2 4889998775 4477887653 78888888888764
No 400
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=30.74 E-value=2e+02 Score=20.42 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=32.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 263 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (377)
...+++|+....+. ...+.+..+++..++| -+.+.+..+++......
T Consensus 31 gkaklViiA~D~~~--~~~~~i~~~c~~~~Ip-~~~~~~tk~eLG~a~Gk 77 (99)
T PRK01018 31 GKAKLVIVASNCPK--DIKEDIEYYAKLSGIP-VYEYEGSSVELGTLCGK 77 (99)
T ss_pred CCceEEEEeCCCCH--HHHHHHHHHHHHcCCC-EEEECCCHHHHHHHhCC
Confidence 56888887765432 5788899999998876 23444555677666654
No 401
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=30.67 E-value=1.2e+02 Score=26.05 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCcEEEecCc------CCHHHHHHhcCEEEecCCCCCCccc--hHHHHHHHcCCcEEEeCCCC
Q 017085 245 QDRVHFVNKT------LTVAPYLAAIDVLVQNSQAWGECFG--RITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 245 ~~~v~~~g~~------~~~~~~~~~adv~l~ps~~~~e~~~--~~~~Ea~a~g~PvI~s~~~~ 299 (377)
.+.|.+.|.. +...+.+..||++|.-..+ ....| .-+-+|...|.|+|.-+...
T Consensus 180 rP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTS-l~V~pa~~l~~~a~~~g~~viiIN~~~ 241 (260)
T cd01409 180 KPDVVFFGENVPRDRVVTAAARLAEADALLVLGSS-LMVYSGYRFVLAAAEAGLPIAIVNIGP 241 (260)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcC-ceecchhhHHHHHHHCCCcEEEEcCCC
Confidence 3568888753 3355667889987753221 23333 33446888999999887543
No 402
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=30.67 E-value=2.4e+02 Score=21.40 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLA 262 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~ 262 (377)
+++.+ ++|+..........+..+.++++|+. ..|.+.. +++..++.
T Consensus 84 ~~~~i-~vGG~~~~~~~~~~~~~~~l~~~G~~--~vf~~~~~~~~i~~~l~ 131 (137)
T PRK02261 84 GDILL-YVGGNLVVGKHDFEEVEKKFKEMGFD--RVFPPGTDPEEAIDDLK 131 (137)
T ss_pred CCCeE-EEECCCCCCccChHHHHHHHHHcCCC--EEECcCCCHHHHHHHHH
Confidence 46654 44443221112345566677778863 5565443 55555543
No 403
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=30.50 E-value=77 Score=26.48 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=32.7
Q ss_pred hhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCch
Q 017085 4 AFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAV 67 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~ 67 (377)
..-|++-|.+|++++.+...... -..++.+.+......... .+||+|++....
T Consensus 25 ~dVLrr~Gi~Vt~ag~~~~~~vk----------cs~~v~~~~d~~l~D~~~-~~yDviilPGG~ 77 (247)
T KOG2764|consen 25 IDVLRRGGIDVTVAGPNKKEGVK----------CSRGVHILPDNALFDVVD-SKYDVIILPGGL 77 (247)
T ss_pred HHHHHhcCceEEEecCCCCcccc----------cccceEecccccchhhcc-ccccEEEecCCc
Confidence 35688999999999966532111 013444444333333333 889999998763
No 404
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=30.49 E-value=2.5e+02 Score=24.91 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=45.8
Q ss_pred EEEec-CCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 219 VIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 219 ~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
+|+|. +.-......+++++++++.|....+...|.. +.+..+ ..|++|+.+. .+ +++..+-.+-+|||++
T Consensus 217 IlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf--~iD~fV~~aC--Pr---~sidd~~~f~kPvlTP 289 (308)
T TIGR03682 217 ILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNL--DFDAYVNTAC--PR---IAIDDYARFKKPVLTP 289 (308)
T ss_pred EEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcC--CcCEEEEccC--CC---cccccHhhCCCcccCH
Confidence 45554 3333335677888888888887667777765 445444 4999998776 22 3456666777777765
No 405
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins.; PDB: 2OHW_A.
Probab=30.33 E-value=2.1e+02 Score=21.27 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=37.0
Q ss_pred HHHHHHhCCCCCCe-EEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcC
Q 017085 165 EHVRESLGVRNEDL-LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 243 (377)
Q Consensus 165 ~~~r~~~~~~~~~~-~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 243 (377)
++-|..+|-=.++. +-+..+.+....-...+.+++. ++++.++.|-|.-+. .......+++++.+
T Consensus 23 DEqr~yLGtfrERV~lalt~~q~~~~~~~~~~~~~l~-----------~~~~~~l~ing~l~~---~~~~~YiklA~~~~ 88 (120)
T PF07997_consen 23 DEQRRYLGTFRERVILALTKEQVEEPDIYPEFEQALK-----------DYPNYKLKINGNLDY---SFQSKYIKLANKHG 88 (120)
T ss_dssp HHHHHTTT--GGGEEEEEEHHHHTSSS--HHHHHHHH-----------C-SSEEEEEETTS-H---HHHHHHHHHHHHTT
T ss_pred HHHHHhcchHHhHhhheecHHHHhChhHHHHHHHHHh-----------hCCCeEEEEcCCCCH---HHHHHHHHHHHHcC
Confidence 44466666433433 3333454555555555555544 448999999999643 35677788888888
Q ss_pred CC
Q 017085 244 IQ 245 (377)
Q Consensus 244 ~~ 245 (377)
++
T Consensus 89 ~~ 90 (120)
T PF07997_consen 89 IP 90 (120)
T ss_dssp --
T ss_pred CC
Confidence 75
No 406
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=30.25 E-value=62 Score=23.63 Aligned_cols=17 Identities=24% Similarity=0.065 Sum_probs=11.8
Q ss_pred hhHHHhhhcccEEEEcC
Q 017085 49 QETINTALKADLIVLNT 65 (377)
Q Consensus 49 ~~~~~~~~~~Div~~~~ 65 (377)
+.....+.+||+|.+..
T Consensus 42 l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 42 IVEAAKEEDADAIGLSG 58 (119)
T ss_pred HHHHHHHcCCCEEEEec
Confidence 34455678899988765
No 407
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=30.18 E-value=1.2e+02 Score=23.10 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=39.1
Q ss_pred hhHHHhcCceEEEEEecCCC--cchhHhhhhhhhhcccCceEEE-----ccc-------hhHHHhhhcccEEEEcCchhh
Q 017085 4 AFLLRGVGTKVNWITIQKPS--EEDEVIYSLEHKMWDRGVQVIS-----AKG-------QETINTALKADLIVLNTAVAG 69 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~Div~~~~~~~~ 69 (377)
+++|.++||+=..+...... ........+...+...|+.... ... ...+++..+||.|++.+...+
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~~~~~~a 80 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIICSNDRLA 80 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEESSHHHH
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEEcCHHHH
Confidence 57899999876666653222 2233334556666677776521 111 111222238899999876644
Q ss_pred hHHHHHh
Q 017085 70 KWLDAVL 76 (377)
Q Consensus 70 ~~~~~~~ 76 (377)
..+...+
T Consensus 81 ~~~~~~l 87 (160)
T PF13377_consen 81 LGVLRAL 87 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 408
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.12 E-value=3.4e+02 Score=22.96 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=42.8
Q ss_pred cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC-c--CCHHHHHHhcC
Q 017085 189 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T--LTVAPYLAAID 265 (377)
Q Consensus 189 ~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~-~--~~~~~~~~~ad 265 (377)
..|++.+++.+.. .++.-+++-+-+.+..+...++.+.++++|+.. +..+.+ . +.+..+...+|
T Consensus 87 ~~~~~~~i~~~~~------------~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~-~~~v~p~T~~e~l~~~~~~~~ 153 (244)
T PRK13125 87 VDSLDNFLNMARD------------VGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKP-VFFTSPKFPDLLIHRLSKLSP 153 (244)
T ss_pred hhCHHHHHHHHHH------------cCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCE-EEEECCCCCHHHHHHHHHhCC
Confidence 4577777776653 244444443321111134567888899999964 444444 2 56788888888
Q ss_pred EEEecCC
Q 017085 266 VLVQNSQ 272 (377)
Q Consensus 266 v~l~ps~ 272 (377)
-+++-|.
T Consensus 154 ~~l~msv 160 (244)
T PRK13125 154 LFIYYGL 160 (244)
T ss_pred CEEEEEe
Confidence 6654354
No 409
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=29.99 E-value=1.3e+02 Score=19.58 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 017085 320 ITPLAKNIVKLATHVERRLTMGKRGYERVKE 350 (377)
Q Consensus 320 ~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 350 (377)
.++++..+.++ |.+....|.+...+++.+
T Consensus 5 yeefaakldrl--d~ef~kkm~eqn~kffad 33 (90)
T PF03037_consen 5 YEEFAAKLDRL--DAEFNKKMQEQNKKFFAD 33 (90)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhhhcC
Confidence 46667666665 555555665555444444
No 410
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=29.96 E-value=1.2e+02 Score=22.46 Aligned_cols=16 Identities=31% Similarity=0.198 Sum_probs=11.0
Q ss_pred HhhHHHhcCceEEEEE
Q 017085 3 LAFLLRGVGTKVNWIT 18 (377)
Q Consensus 3 la~~L~~~G~eV~v~~ 18 (377)
++..|++.|++|...-
T Consensus 8 ~aa~l~~~g~~v~~~~ 23 (127)
T cd02068 8 LAAVLEDAGFIVAEHD 23 (127)
T ss_pred HHHHHHHCCCeeeecC
Confidence 5667778887766643
No 411
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=29.93 E-value=1.1e+02 Score=23.59 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCCCcEEEecCc----CCHHHHHHhcCEEEecCCC------CCC--ccchHHHHHHHcCCcEEEeCCC
Q 017085 232 ESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAAIDVLVQNSQA------WGE--CFGRITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 232 ~~~l~~~~~~~~~~~~v~~~g~~----~~~~~~~~~adv~l~ps~~------~~e--~~~~~~~Ea~a~g~PvI~s~~~ 298 (377)
.+++++...++|+. +..+... +++.+.+..||++.+..-+ .+. +.-..+-|+...|.|++.+..|
T Consensus 2 ~~~~~~~f~~~g~~--v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAG 78 (154)
T PF03575_consen 2 VEKFRKAFRKLGFE--VDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAG 78 (154)
T ss_dssp HHHHHHHHHHCT-E--EEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHH
T ss_pred HHHHHHHHHHCCCE--EEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChH
Confidence 34556666667754 5555543 3677777888877653211 001 1223456788899999987544
No 412
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=29.86 E-value=57 Score=23.65 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=25.2
Q ss_pred HHHHhcCEEEecCCCCCCccchHHHH---HHHcCCcEEEeCC
Q 017085 259 PYLAAIDVLVQNSQAWGECFGRITIE---AMAFQLPVLGTAA 297 (377)
Q Consensus 259 ~~~~~adv~l~ps~~~~e~~~~~~~E---a~a~g~PvI~s~~ 297 (377)
+.+..||++|..... ...-+.+.+| |.+.|+||++-..
T Consensus 57 ~~i~~~D~via~l~~-~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 57 EGIRECDIVIANLDG-FRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHSSEEEEEECS-SS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHCCEEEEECCC-CCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 778999998865431 1223445665 6789999998643
No 413
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=29.86 E-value=2.9e+02 Score=26.41 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=47.5
Q ss_pred CeEEEEEec-CCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 215 SVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 215 ~~~l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
+.-=+|+|. +........+.+++++++.|....+...|.. +.+. -+...|++|+.+. ++ +++.++-.+-+|
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKLa-NF~eID~fV~vaC--Pr---~sidd~~~F~KP 355 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKPNPAKLA-NFEDIDIFVLLGC--SQ---SGIIDSNEFYRP 355 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh-CCCCCCEEEEccC--CC---cccccHhhCCCc
Confidence 333455665 2223335677888888988887777777865 3343 3346899998776 33 244566666777
Q ss_pred EEEe
Q 017085 292 VLGT 295 (377)
Q Consensus 292 vI~s 295 (377)
||++
T Consensus 356 VlTP 359 (496)
T TIGR00272 356 IVTP 359 (496)
T ss_pred eecH
Confidence 7764
No 414
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=29.81 E-value=1.9e+02 Score=22.43 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=5.4
Q ss_pred hCHHHHHHHHH
Q 017085 332 THVERRLTMGK 342 (377)
Q Consensus 332 ~~~~~~~~~~~ 342 (377)
.|++.++++..
T Consensus 131 ~d~~l~~kl~~ 141 (150)
T PF00731_consen 131 KDPELREKLRA 141 (150)
T ss_dssp T-HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 36666655544
No 415
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=29.70 E-value=2.2e+02 Score=20.63 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 263 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (377)
...+++|+....+. ...+.++..++..++| -+.+.|..+++......
T Consensus 40 gkaklViiA~D~~~--~~kkki~~~~~~~~Vp-v~~~~~t~~eLG~A~Gk 86 (108)
T PTZ00106 40 GKAKLVIISNNCPP--IRRSEIEYYAMLSKTG-VHHYAGNNNDLGTACGR 86 (108)
T ss_pred CCeeEEEEeCCCCH--HHHHHHHHHHhhcCCC-EEEeCCCHHHHHHHhCC
Confidence 57888888765432 4678888888888876 23345655777666654
No 416
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=29.61 E-value=1e+02 Score=25.44 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=32.6
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCchhh
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAG 69 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~ 69 (377)
|++.|.+.||||++.....+.... ......+..+..... ......-|+|+.--|+..
T Consensus 16 lA~~~a~ag~eV~igs~r~~~~~~-------a~a~~l~~~i~~~~~---~dA~~~aDVVvLAVP~~a 72 (211)
T COG2085 16 LALRLAKAGHEVIIGSSRGPKALA-------AAAAALGPLITGGSN---EDAAALADVVVLAVPFEA 72 (211)
T ss_pred HHHHHHhCCCeEEEecCCChhHHH-------HHHHhhccccccCCh---HHHHhcCCEEEEeccHHH
Confidence 788999999999999766543111 111112222222111 122345899999877644
No 417
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=29.53 E-value=2.8e+02 Score=25.02 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=48.6
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
.+-+++--.+.-......+.+.+.+.+.|.+......+.. .+-..-+...|+++..+. .. +++=+.-..++|++
T Consensus 239 ~~giiv~tk~gQ~r~~~~~~l~k~~~~~g~~~~li~~~~i~p~~L~~f~~iD~~v~taC--PR---i~iDd~~~f~kPlL 313 (347)
T COG1736 239 SFGIIVSTKGGQRRLEVARELVKLLKEAGKEVYLIVVDEISPDKLANFDDIDAFVNTAC--PR---IPIDDGDRFKKPLL 313 (347)
T ss_pred eEEEEEecccccCcHHHHHHHHHHHHHcCCceEEEEecCCCHHHHhcccceeEEEEecC--CC---cccchHhhhCCccc
Confidence 3444443333333335677888888888877666666654 333344456899998776 22 45668888999998
Q ss_pred EeC
Q 017085 294 GTA 296 (377)
Q Consensus 294 ~s~ 296 (377)
++.
T Consensus 314 TP~ 316 (347)
T COG1736 314 TPY 316 (347)
T ss_pred ChH
Confidence 763
No 418
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=29.42 E-value=4.7e+02 Score=24.40 Aligned_cols=133 Identities=10% Similarity=0.057 Sum_probs=70.4
Q ss_pred CeEEEEeccc---cccchhHHHHHHHHHHHHH-Hh-----hhcc-cCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCC
Q 017085 177 DLLFAIINSV---SRGKGQDLFLHSFYESLEL-IK-----EKKL-EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD 246 (377)
Q Consensus 177 ~~~i~~~G~~---~~~Kg~~~ll~a~~~l~~~-l~-----~~~~-~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~ 246 (377)
+.+.+....+ +...|.+..++++-+...+ +. +... +...-.+.+.|.-.+ ....+++.+.+++|++.
T Consensus 117 pVi~v~tpgF~~~s~~~G~d~a~~ai~~~l~~~~~~g~~~~~~~~~~~~~~vnl~G~~~~---gd~~eik~lL~~~Gi~~ 193 (422)
T TIGR02015 117 RVLGIDVPGFGVPTHAEAKDVLVSAMLKYARREVSAGPVGEPKSGRDSKPTLVLLGEIFP---VDAMVIGGVLQPIGVES 193 (422)
T ss_pred CeEEEeCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCceeeecCCCc---ccHHHHHHHHHHcCCCe
Confidence 4444444444 3367999888887764321 00 0000 001235567775432 24578999999999998
Q ss_pred cEEEecCcCCHHHHHHhc----CEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhH
Q 017085 247 RVHFVNKTLTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITP 322 (377)
Q Consensus 247 ~v~~~g~~~~~~~~~~~a----dv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~ 322 (377)
++.+.|. .+.++-++. .+.+.|. .+ .......-+|+|.+...-- | ..+ .++
T Consensus 194 ~~~~~G~--~~~ei~~a~~A~~~i~l~~~----~~--~a~~l~~~~GvP~~~~~Pi--------G-------~~~--Td~ 248 (422)
T TIGR02015 194 GPTVPGR--DWRELYAALDSSAVAVLHPF----YE--ATARLFEAAGVKIVGSAPV--------G-------ANG--TGE 248 (422)
T ss_pred EEecCCC--CHHHHHhhhcCeEEEEeCcc----ch--HHHHHHHHcCCceeccCCC--------C-------hHH--HHH
Confidence 8877664 344443332 2333322 22 2222223789996532111 1 112 677
Q ss_pred HHHHHHHHhh-CHHHH
Q 017085 323 LAKNIVKLAT-HVERR 337 (377)
Q Consensus 323 la~~i~~l~~-~~~~~ 337 (377)
|..+|.++.. +++..
T Consensus 249 fL~~la~~~G~~~~~~ 264 (422)
T TIGR02015 249 WLERIGEALDLDPDTV 264 (422)
T ss_pred HHHHHHHHhCcCHHHH
Confidence 7777777766 44433
No 419
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=29.40 E-value=3.4e+02 Score=24.14 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc------CCHHHHHH-----hc---CEEEecCCCCCCccc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT------LTVAPYLA-----AI---DVLVQNSQAWGECFG 279 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~------~~~~~~~~-----~a---dv~l~ps~~~~e~~~ 279 (377)
|+ .++|+|+... .....+...+++|+. |.-.|.. +.+...++ +. .++|+-. |+--+
T Consensus 76 pd-~VLIIGGp~A----Vs~~yE~~Lks~Git--V~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~G---wDy~~ 145 (337)
T COG2247 76 PD-LVLIIGGPIA----VSPNYENALKSLGIT--VKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYG---WDYAD 145 (337)
T ss_pred Cc-eEEEECCCCc----CChhHHHHHHhCCcE--EEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEec---cccHH
Confidence 55 4455555432 233444455567764 4444421 23444443 33 3444433 22222
Q ss_pred hHHHHHHHcC-CcEEEeCC
Q 017085 280 RITIEAMAFQ-LPVLGTAA 297 (377)
Q Consensus 280 ~~~~Ea~a~g-~PvI~s~~ 297 (377)
.++|+|--| +|++.++.
T Consensus 146 -~~~e~~k~~~~p~~~~n~ 163 (337)
T COG2247 146 -ALMELMKEGIVPVILKNT 163 (337)
T ss_pred -HHHHHHhcCcceeEeccc
Confidence 889999888 56666653
No 420
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=29.40 E-value=1.7e+02 Score=21.27 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=10.4
Q ss_pred HhhhcccEEEEcCch
Q 017085 53 NTALKADLIVLNTAV 67 (377)
Q Consensus 53 ~~~~~~Div~~~~~~ 67 (377)
....+||+|-+....
T Consensus 46 i~~~~pdiV~iS~~~ 60 (125)
T cd02065 46 AKEEDADVVGLSALS 60 (125)
T ss_pred HHHcCCCEEEEecch
Confidence 345789999877544
No 421
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=29.23 E-value=45 Score=24.70 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=14.1
Q ss_pred HhhHHHhcCceEEEEEecC
Q 017085 3 LAFLLRGVGTKVNWITIQK 21 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~ 21 (377)
|+.+.+++||+|.++....
T Consensus 23 lm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 23 LMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp HHHHHHHTT-EEEEE-GGG
T ss_pred HHHHHHHCCCEEEEEEcCc
Confidence 6788889999999998654
No 422
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.10 E-value=4e+02 Score=24.04 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 231 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 231 ~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
..++-++.+++.+++ +....|.-+ ++.+. +|++.+++. .-----.++-++..|++|++-.
T Consensus 42 s~~~A~~fAq~~~~~-~~k~y~syE---eLakd~~vDvVyi~~~--~~qH~evv~l~l~~~K~VL~EK 103 (351)
T KOG2741|consen 42 SLERAKEFAQRHNIP-NPKAYGSYE---ELAKDPEVDVVYISTP--NPQHYEVVMLALNKGKHVLCEK 103 (351)
T ss_pred cHHHHHHHHHhcCCC-CCccccCHH---HHhcCCCcCEEEeCCC--CccHHHHHHHHHHcCCcEEecc
Confidence 567788899999997 777777543 34444 488877775 2222345677899999988753
No 423
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=29.07 E-value=1.9e+02 Score=20.40 Aligned_cols=46 Identities=7% Similarity=0.124 Sum_probs=29.4
Q ss_pred cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEe
Q 017085 189 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV 251 (377)
Q Consensus 189 ~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~ 251 (377)
.-|+..|++....+.+ .+.++.++|-. ..+.+..+..|+.+-+.+.
T Consensus 58 ssgl~~L~~~~~~~~~---------~~~~~~l~~~~--------~~~~~~l~~~~l~~~~~i~ 103 (108)
T TIGR00377 58 SSGLGVLLGRYKQVRR---------VGGQLVLVSVS--------PRVARLLDITGLLRIIPIY 103 (108)
T ss_pred cccHHHHHHHHHHHHh---------cCCEEEEEeCC--------HHHHHHHHHhChhheeccC
Confidence 4677777777665533 57888999975 4455666666665544443
No 424
>PRK06988 putative formyltransferase; Provisional
Probab=29.07 E-value=3.6e+02 Score=23.95 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=7.4
Q ss_pred HHHHHHHhcCCC
Q 017085 234 ELRNYVMQKKIQ 245 (377)
Q Consensus 234 ~l~~~~~~~~~~ 245 (377)
.+++.+.++|++
T Consensus 46 ~v~~~A~~~gip 57 (312)
T PRK06988 46 SVAAVAAEHGIP 57 (312)
T ss_pred HHHHHHHHcCCc
Confidence 456666666664
No 425
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=29.04 E-value=3e+02 Score=22.05 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cCCcEEEeC-CCCc---c
Q 017085 231 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLPVLGTA-AGGT---T 301 (377)
Q Consensus 231 ~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g~PvI~s~-~~~~---~ 301 (377)
....+.......+. .+.......+....+. ..|++++-..- .+.-|..+++.+. ...|+|... .... .
T Consensus 12 ~~~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~~~~d~illd~~~-~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~ 88 (222)
T PRK10643 12 LLQGLILALQTEGY--ACDCASTAREAEALLESGHYSLVVLDLGL-PDEDGLHLLRRWRQKKYTLPVLILTARDTLEDRV 88 (222)
T ss_pred HHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCEEEEECCC-CCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHH
Confidence 44555555555443 2333333233333332 35776654331 2334555555544 346777543 2221 2
Q ss_pred cceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 302 EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 302 e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+.+..|..+++..+.+ .+++.+.+..++.
T Consensus 89 ~~~~~ga~~~l~kp~~--~~~l~~~i~~~~~ 117 (222)
T PRK10643 89 AGLDVGADDYLVKPFA--LEELHARIRALIR 117 (222)
T ss_pred HHHhcCCCeEEeCCCC--HHHHHHHHHHHHh
Confidence 2244567789988887 8899888887664
No 426
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=29.03 E-value=47 Score=27.49 Aligned_cols=56 Identities=18% Similarity=0.120 Sum_probs=32.5
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEE-----ccchhHHHhhhcccEEEEcC
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-----AKGQETINTALKADLIVLNT 65 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Div~~~~ 65 (377)
.+++.|.++|++|+.++........... ..++.+.. ...+..+....++|.|+...
T Consensus 13 ~l~~~l~~~g~~v~~~~~~~~~~~~~~~--------~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a 73 (236)
T PF01370_consen 13 ALVRQLLKKGHEVIVLSRSSNSESFEEK--------KLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLA 73 (236)
T ss_dssp HHHHHHHHTTTEEEEEESCSTGGHHHHH--------HTTEEEEESETTSHHHHHHHHHHHTESEEEEEB
T ss_pred HHHHHHHHcCCccccccccccccccccc--------cceEEEEEeeccccccccccccccCceEEEEee
Confidence 5789999999999977755543221111 01333322 22445556666788877554
No 427
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=28.77 E-value=94 Score=25.18 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=15.3
Q ss_pred CcHhhHHHhcCceEEEEEec
Q 017085 1 MELAFLLRGVGTKVNWITIQ 20 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~ 20 (377)
|+|++.|...|++|+|+-.+
T Consensus 15 yNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 15 YNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred HHHHHHHHHcCCceEEEECC
Confidence 47788888888888887655
No 428
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=28.75 E-value=4.5e+02 Score=23.89 Aligned_cols=84 Identities=11% Similarity=0.178 Sum_probs=56.6
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc----CCHHHHHHh----cCEEEecCCCCCCccchHHHH
Q 017085 213 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAA----IDVLVQNSQAWGECFGRITIE 284 (377)
Q Consensus 213 ~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~----~~~~~~~~~----adv~l~ps~~~~e~~~~~~~E 284 (377)
+|+-++++.|-|.+...+........+++.++. |+.++... .-+..++.. -|-|+.|.+- .--.|....|
T Consensus 128 nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~~-Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHV-stI~G~~~y~ 205 (364)
T PRK15062 128 NPDKEVVFFAIGFETTAPATAATLLQAKAEGLK-NFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHV-STIIGTEPYE 205 (364)
T ss_pred CCCCeEEEEecCchhccHHHHHHHHHHHHcCCC-CEEEEEeccccHHHHHHHHcCCCCCccEEEecCEe-EEEeccchhH
Confidence 378888888888776555666666666667764 77777643 334555543 6789999873 4445666676
Q ss_pred HH--HcCCcEEEeCCC
Q 017085 285 AM--AFQLPVLGTAAG 298 (377)
Q Consensus 285 a~--a~g~PvI~s~~~ 298 (377)
.+ -+|+|+|++...
T Consensus 206 ~l~~~y~~P~VVaGFE 221 (364)
T PRK15062 206 FLAEEYGIPVVVAGFE 221 (364)
T ss_pred HHHHHcCCCeEEeccC
Confidence 65 568999998643
No 429
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=28.69 E-value=2.9e+02 Score=25.24 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=42.5
Q ss_pred CCe-EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC-c---CCHHHHHHhcCEEEecCCCCCCccchHHH-HHHH
Q 017085 214 PSV-HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T---LTVAPYLAAIDVLVQNSQAWGECFGRITI-EAMA 287 (377)
Q Consensus 214 ~~~-~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~-~---~~~~~~~~~adv~l~ps~~~~e~~~~~~~-Ea~a 287 (377)
.+. +++++|.. .+.+++.+.++. ..++.+..- . +++.++++.+|+++..+- .. ++..++ -|+.
T Consensus 21 ~~~~~v~va~r~-------~~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~g--p~-~~~~v~~~~i~ 89 (386)
T PF03435_consen 21 GPFEEVTVADRN-------PEKAERLAEKLL-GDRVEAVQVDVNDPESLAELLRGCDVVINCAG--PF-FGEPVARACIE 89 (386)
T ss_dssp TCE-EEEEEESS-------HHHHHHHHT--T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SS--GG-GHHHHHHHHHH
T ss_pred CCCCcEEEEECC-------HHHHHHHHhhcc-ccceeEEEEecCCHHHHHHHHhcCCEEEECCc--cc-hhHHHHHHHHH
Confidence 555 78888875 355555554422 234544442 1 458899999999997664 22 444444 5678
Q ss_pred cCCcEEEe
Q 017085 288 FQLPVLGT 295 (377)
Q Consensus 288 ~g~PvI~s 295 (377)
.|++.|-+
T Consensus 90 ~g~~yvD~ 97 (386)
T PF03435_consen 90 AGVHYVDT 97 (386)
T ss_dssp HT-EEEES
T ss_pred hCCCeecc
Confidence 89998884
No 430
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=28.63 E-value=1.8e+02 Score=24.33 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=33.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcC--CCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKK--IQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~--~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
.....+++|+...-. ...+...+.+++.. ++ .+.|.|..+.+ -..+|.+++||.
T Consensus 24 ~gtdai~vGGS~~v~-~~~~~~~~~ik~~~~~~P-vilfp~~~~~i---~~~aDa~l~~sv 79 (219)
T cd02812 24 SGTDAIMVGGSDGVS-STLDNVVRLIKRIRRPVP-VILFPSNPEAV---SPGADAYLFPSV 79 (219)
T ss_pred cCCCEEEECCccchh-hhHHHHHHHHHHhcCCCC-EEEeCCCcccc---CcCCCEEEEEee
Confidence 456778888864221 23444555555543 33 56677765444 467999999986
No 431
>PRK05380 pyrG CTP synthetase; Validated
Probab=28.42 E-value=5.5e+02 Score=24.84 Aligned_cols=219 Identities=15% Similarity=0.106 Sum_probs=112.6
Q ss_pred hcccEEEEcCch------hhhHHHHHhhcCCCccccceeEEeeeecccccc--------------hhhhccccccceeee
Q 017085 56 LKADLIVLNTAV------AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK--------------LDYVKHLPLVAGAMI 115 (377)
Q Consensus 56 ~~~Div~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~--------------~~~~~~~~~~~~~~~ 115 (377)
.++|++++.-.. ...++.++...... .....+..+|-..-.+.. +..+..--.-|-++|
T Consensus 131 ~~~dv~i~EiGGTvGDiEs~pf~ea~rq~~~~-~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd~i~~ 209 (533)
T PRK05380 131 TDADVVIVEIGGTVGDIESLPFLEAIRQLRLE-LGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVC 209 (533)
T ss_pred CCCCEEEEEeCCccccccccHHHHHHHHHHHh-hCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEE
Confidence 689999987522 34444444432222 123344556643322211 111112225577888
Q ss_pred eccc-hhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHH
Q 017085 116 DSHV-TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL 194 (377)
Q Consensus 116 ~s~~-~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ 194 (377)
-|+. ..+..+++......++.+.+.-.++ .+.....+.....+...+.+.+.++++.. ..+
T Consensus 210 R~~~~l~~~~~~Kia~fc~v~~~~vi~~~d---~~~iy~vPl~l~~q~~~~~i~~~l~l~~~------------~~~--- 271 (533)
T PRK05380 210 RSERPLPEEEKRKIALFCNVPEEAVISAPD---VDSIYEVPLLLHEQGLDDIVLERLGLEAP------------EPD--- 271 (533)
T ss_pred ecCCCCCHHHHHHHHhccCCCHHHEEEcCC---CccHHhhhHHHHHCCCHHHHHHHcCCCCC------------CCC---
Confidence 7754 3455566555555666665555554 33222222222333445667778887621 112
Q ss_pred HHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHH---HHHHHHHhcCCCCcEEEecCc--C--CHHHHHHhcCEE
Q 017085 195 FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFES---ELRNYVMQKKIQDRVHFVNKT--L--TVAPYLAAIDVL 267 (377)
Q Consensus 195 ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~---~l~~~~~~~~~~~~v~~~g~~--~--~~~~~~~~adv~ 267 (377)
++.|..+.+++.+. ...+++-+||.-.+....|.. .|+......+..-.+.+.... + ...+.+..+|-+
T Consensus 272 -~~~w~~~~~~~~~~---~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGI 347 (533)
T PRK05380 272 -LSEWEELVERLKNP---KGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGI 347 (533)
T ss_pred -HHHHHHHHHHHhCC---CCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEE
Confidence 23444444444431 246899999995433323332 222223334444456677653 2 256889999999
Q ss_pred EecCCCC---CCccchHHHHHHHcCCcEEEeCC
Q 017085 268 VQNSQAW---GECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 268 l~ps~~~---~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
++|.-.. .++.-..+-+|...|+|+++.-.
T Consensus 348 IlpGGfG~~~~~g~i~~i~~a~e~~iPiLGICl 380 (533)
T PRK05380 348 LVPGGFGERGIEGKILAIRYARENNIPFLGICL 380 (533)
T ss_pred EecCCCCccccccHHHHHHHHHHCCCcEEEEch
Confidence 9876421 11212234466778999997643
No 432
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=28.23 E-value=3.6e+02 Score=23.10 Aligned_cols=82 Identities=9% Similarity=0.123 Sum_probs=44.8
Q ss_pred EEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEec-CCCcccHHHHHHHHHHHhcCCCCcEEEecCc----C
Q 017085 181 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT----L 255 (377)
Q Consensus 181 ~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~----~ 255 (377)
+|+|-+..+-|...+.+.+.+|++. -++.|+|+-. +.....-......+...++|++ ++=.|.. .
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~--------~~~DfVIaNgENaa~G~Git~~~~~~L~~~GvD--viT~GNH~wdkk 70 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEE--------YGIDFVIANGENAAGGFGITPKIAEELFKAGVD--VITMGNHIWDKK 70 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG----------G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-S--EEE--TTTTSST
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhh--------cCCCEEEECCcccCCCCCCCHHHHHHHHhcCCC--EEecCcccccCc
Confidence 4677777778888787777765442 4577787743 2111111344444555667764 6666642 7
Q ss_pred CHHHHHHhcCEEEecCC
Q 017085 256 TVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~ 272 (377)
|+.+++...+-+|=|..
T Consensus 71 ei~~~i~~~~~ilRPaN 87 (253)
T PF13277_consen 71 EIFDFIDKEPRILRPAN 87 (253)
T ss_dssp THHHHHHH-SSEE--TT
T ss_pred HHHHHHhcCCCcEECCC
Confidence 89999999888887765
No 433
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=27.85 E-value=2.2e+02 Score=25.00 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC--c-CCHHHHHHhcCEEE
Q 017085 192 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--T-LTVAPYLAAIDVLV 268 (377)
Q Consensus 192 ~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~--~-~~~~~~~~~adv~l 268 (377)
.+...+|+..+.+ +.++..++|+++.. +.+++.+... .+.+.+.+. . +|+. +|+.||..+
T Consensus 190 ~~Yy~~Ai~~i~~-------~~~~~~f~ifSDD~-------~w~k~~l~~~--~~~~~~~~~~~~~~Dl~-lms~C~~~I 252 (298)
T PF01531_consen 190 KDYYKKAIEYIRE-------KVKNPKFFIFSDDI-------EWCKENLKFS--NGDVYFSGNNSPYEDLY-LMSQCKHFI 252 (298)
T ss_pred HHHHHHHHHHHHH-------hCCCCEEEEEcCCH-------HHHHHHHhhc--CCcEEEECCCCHHHHHH-HHHhCCcEE
Confidence 4667788877655 34678999999863 3344433332 234566654 2 6665 689999888
Q ss_pred ecC
Q 017085 269 QNS 271 (377)
Q Consensus 269 ~ps 271 (377)
.+-
T Consensus 253 isn 255 (298)
T PF01531_consen 253 ISN 255 (298)
T ss_pred ECC
Confidence 763
No 434
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=27.75 E-value=6.2e+02 Score=26.35 Aligned_cols=110 Identities=10% Similarity=0.034 Sum_probs=66.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH---hcCEEEecCCCCCCccchHHHHHHH---
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGECFGRITIEAMA--- 287 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~---~adv~l~ps~~~~e~~~~~~~Ea~a--- 287 (377)
++.+++++.+.+ .....+....+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+.
T Consensus 680 ~~~~vLivdD~~----~~~~~l~~~L~~~g~--~v~~a~~~~~al~~~~~~~~~Dlvl~D~~m-p~~~G~~~~~~lr~~~ 752 (914)
T PRK11466 680 DGLRLLLIEDNP----LTQRITAEMLNTSGA--QVVAVGNAAQALETLQNSEPFAAALVDFDL-PDYDGITLARQLAQQY 752 (914)
T ss_pred CCcceEEEeCCH----HHHHHHHHHHHhcCC--ceEEeCCHHHHHHHHHcCCCCCEEEEeCCC-CCCCHHHHHHHHHhhC
Confidence 346777887763 345556677776665 3444443344444443 25888865431 3334556665553
Q ss_pred cCCcEEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 288 FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 288 ~g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
..+|+|+..... ..+.+..|..|++..|-+ .+++...|.+++.
T Consensus 753 ~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~ 799 (914)
T PRK11466 753 PSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVP--REVLGQLLAHYLQ 799 (914)
T ss_pred CCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCC--HHHHHHHHHHHhh
Confidence 357777653322 223444567889999988 9999999988764
No 435
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=27.67 E-value=3.5e+02 Score=22.24 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=63.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---c
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---F 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~ 288 (377)
+..+++++.+.. .....+....+..|. .+.......+....+. ..|++++-..- ....|..+++.+. .
T Consensus 4 ~~~~iLiv~d~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~~~~~~~~~~dlvild~~l-~~~~g~~~~~~lr~~~~ 76 (239)
T PRK09468 4 ENYKILVVDDDM----RLRALLERYLTEQGF--QVRSAANAEQMDRLLTRESFHLMVLDLML-PGEDGLSICRRLRSQNN 76 (239)
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 345677777653 345566666666554 3444433334444443 36777764331 3345566666654 3
Q ss_pred CCcEEEeCCCCcc----cceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 QLPVLGTAAGGTT----EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 g~PvI~s~~~~~~----e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
..|+|........ ..+..|..+++..+.+ .+++...+..++.
T Consensus 77 ~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~--~~~L~~~i~~~~~ 122 (239)
T PRK09468 77 PTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFN--PRELLARIRAVLR 122 (239)
T ss_pred CCCEEEEECCCcHHHHHHHHhcCCCeEEECCCC--HHHHHHHHHHHhc
Confidence 5787765332222 2234466778888877 8999999887765
No 436
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=27.64 E-value=70 Score=27.65 Aligned_cols=36 Identities=25% Similarity=0.076 Sum_probs=24.2
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeee
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEM 94 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~ 94 (377)
.+.|++|+.+...+.++..+.+. ..+.|.+.|-|+.
T Consensus 171 P~advyHsvstGyAgl~g~~~k~---~~g~P~lLTEHGI 206 (268)
T PF11997_consen 171 PKADVYHSVSTGYAGLLGALAKY---RYGRPFLLTEHGI 206 (268)
T ss_pred CCCCEEecCCccHHHHHHHHHHH---HhCCCEEEecCCc
Confidence 56799999886544444444432 2246899999986
No 437
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=27.63 E-value=3.2e+02 Score=28.98 Aligned_cols=70 Identities=14% Similarity=0.317 Sum_probs=41.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhc-CCCCcEEE-ecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHF-VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~-~~~~~v~~-~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
++.+.+. ..+..++.++.+ +.. -+.+ ....+++.++++.+|+++...- ..--..++..|+.+|+++++.
T Consensus 608 lV~VaD~------~~~~a~~la~~~~~~~-~v~lDv~D~e~L~~~v~~~DaVIsalP--~~~H~~VAkaAieaGkHvv~e 678 (1042)
T PLN02819 608 HVIVASL------YLKDAKETVEGIENAE-AVQLDVSDSESLLKYVSQVDVVISLLP--ASCHAVVAKACIELKKHLVTA 678 (1042)
T ss_pred EEEEECC------CHHHHHHHHHhcCCCc-eEEeecCCHHHHHHhhcCCCEEEECCC--chhhHHHHHHHHHcCCCEEEC
Confidence 4555654 234555565554 221 1333 2333567777788999887554 222345666888999999977
Q ss_pred C
Q 017085 296 A 296 (377)
Q Consensus 296 ~ 296 (377)
.
T Consensus 679 k 679 (1042)
T PLN02819 679 S 679 (1042)
T ss_pred c
Confidence 4
No 438
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.61 E-value=2.3e+02 Score=26.68 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=33.7
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcC
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNT 65 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~ 65 (377)
-+|+.|.++|++|++.-......... ....+...|+.+.........+ .++|+|+...
T Consensus 28 a~a~~L~~~G~~V~~~D~~~~~~~~~----~~~~l~~~gi~~~~~~~~~~~~--~~~dlVV~Sp 85 (458)
T PRK01710 28 PLIKFLVKLGAKVTAFDKKSEEELGE----VSNELKELGVKLVLGENYLDKL--DGFDVIFKTP 85 (458)
T ss_pred HHHHHHHHCCCEEEEECCCCCccchH----HHHHHHhCCCEEEeCCCChHHh--ccCCEEEECC
Confidence 36889999999998865332211111 1122455687776543322212 5689998875
No 439
>PLN00203 glutamyl-tRNA reductase
Probab=27.57 E-value=5.7e+02 Score=24.72 Aligned_cols=78 Identities=12% Similarity=0.058 Sum_probs=40.7
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHc-----CCc
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF-----QLP 291 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~-----g~P 291 (377)
+++++... .+....++.+++ ...+.+... +++.+.+..+|+++..+....--+.-..++.+.. |.|
T Consensus 292 ~V~V~nRs-------~era~~La~~~~-g~~i~~~~~-~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~ 362 (519)
T PLN00203 292 KMVVVNRS-------EERVAALREEFP-DVEIIYKPL-DEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGK 362 (519)
T ss_pred eEEEEeCC-------HHHHHHHHHHhC-CCceEeecH-hhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCC
Confidence 45666554 244455555543 112222222 5677888999998875531011122334444422 578
Q ss_pred EEEeCCCCcccc
Q 017085 292 VLGTAAGGTTEI 303 (377)
Q Consensus 292 vI~s~~~~~~e~ 303 (377)
.+.-|.+-..++
T Consensus 363 ~~~IDLAvPRdI 374 (519)
T PLN00203 363 RLFVDISVPRNV 374 (519)
T ss_pred eEEEEeCCCCCC
Confidence 888886654443
No 440
>PRK12342 hypothetical protein; Provisional
Probab=27.52 E-value=1.4e+02 Score=25.57 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=17.0
Q ss_pred cHhhHHHhcCceEEEEEecCCC
Q 017085 2 ELAFLLRGVGTKVNWITIQKPS 23 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~ 23 (377)
+.|-.|++.|-+|++++.++..
T Consensus 42 E~AlrLk~~g~~Vtvls~Gp~~ 63 (254)
T PRK12342 42 EAASQLATDGDEIAALTVGGSL 63 (254)
T ss_pred HHHHHHhhcCCEEEEEEeCCCh
Confidence 4567777779999999977654
No 441
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=27.25 E-value=66 Score=28.15 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=19.0
Q ss_pred cceeeecCCCCChhHHHH------HHHHHhhCHHHHHHHHHH
Q 017085 308 TTGLLHPVGKEGITPLAK------NIVKLATHVERRLTMGKR 343 (377)
Q Consensus 308 ~~g~~~~~~~~~~~~la~------~i~~l~~~~~~~~~~~~~ 343 (377)
-+||+++..| ..+... ...-++++++...++.+.
T Consensus 255 ~d~~vid~~D--~~~~~~~g~~v~~~~t~m~~~~~~~~la~~ 294 (297)
T TIGR01819 255 LDVFVVDEVD--KADEDRFGCHVRRTDTLMTTLEDTARLARA 294 (297)
T ss_pred ccEEEEecCc--hhhhccCCceeEecCcccCCHHHHHHHHHH
Confidence 4678888776 444422 133456666655555443
No 442
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=27.18 E-value=3.2e+02 Score=23.17 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=38.5
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec----------Cc--CCHHHHHH-----hcCEEEecCCCCCCccc
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN----------KT--LTVAPYLA-----AIDVLVQNSQAWGECFG 279 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g----------~~--~~~~~~~~-----~adv~l~ps~~~~e~~~ 279 (377)
++-++..-.+ +..+.+.+..++.|++ -+.+.+ .+ +.+.+... .+|.++++..+ .-++.
T Consensus 122 RIalvTPY~~---~v~~~~~~~l~~~G~e-V~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTn-Lrt~~ 196 (239)
T TIGR02990 122 RISLLTPYTP---ETSRPMAQYFAVRGFE-IVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTA-LRAAT 196 (239)
T ss_pred EEEEECCCcH---HHHHHHHHHHHhCCcE-EeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCC-chhHH
Confidence 4555555221 3456667777777764 222222 11 33444443 36766665441 22222
Q ss_pred -hHHHHHHHcCCcEEEeCCC
Q 017085 280 -RITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 280 -~~~~Ea~a~g~PvI~s~~~ 298 (377)
+.-+|.. .|+|||+|+..
T Consensus 197 vi~~lE~~-lGkPVlsSNqa 215 (239)
T TIGR02990 197 CAQRIEQA-IGKPVVTSNQA 215 (239)
T ss_pred HHHHHHHH-HCCCEEEHHHH
Confidence 1123443 79999999754
No 443
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.06 E-value=2.9e+02 Score=24.13 Aligned_cols=38 Identities=8% Similarity=0.218 Sum_probs=20.4
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
|...++.+|+.+... .|.+...+.++++|+.-...-+.
T Consensus 34 P~Laii~vg~d~as~-~Yv~~k~k~~~~~Gi~~~~~~l~ 71 (284)
T PRK14177 34 PKLATILVGNNPASE-TYVSMKVKACHKVGMGSEMIRLK 71 (284)
T ss_pred CeEEEEEeCCChhHH-HHHHHHHHHHHHcCCEEEEEECC
Confidence 555556666653322 35555566667777654443333
No 444
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.94 E-value=1.4e+02 Score=28.24 Aligned_cols=58 Identities=19% Similarity=0.143 Sum_probs=35.3
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTA 66 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~ 66 (377)
++|+.|.++|++|+++-..... ........+...|+.+....... ....+|+|+....
T Consensus 30 ~~A~~L~~~G~~V~~~d~~~~~----~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s~G 87 (480)
T PRK01438 30 AAADALLELGARVTVVDDGDDE----RHRALAAILEALGATVRLGPGPT---LPEDTDLVVTSPG 87 (480)
T ss_pred HHHHHHHHCCCEEEEEeCCchh----hhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEECCC
Confidence 5689999999999987533211 11122344556788776533222 2356899988763
No 445
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.92 E-value=4.1e+02 Score=22.89 Aligned_cols=116 Identities=13% Similarity=0.072 Sum_probs=69.3
Q ss_pred Eeccccc--cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc---CC
Q 017085 182 IINSVSR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LT 256 (377)
Q Consensus 182 ~~G~~~~--~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~---~~ 256 (377)
..+-.++ +.|++.+++.+++ .++.=+++-+-+. +..+++.+.+++.|+. .|.+..+. +.
T Consensus 96 lm~Y~N~i~~~G~e~F~~~~~~------------aGvdgviipDLP~---ee~~~~~~~~~~~gi~-~I~lv~PtT~~er 159 (263)
T CHL00200 96 IFTYYNPVLHYGINKFIKKISQ------------AGVKGLIIPDLPY---EESDYLISVCNLYNIE-LILLIAPTSSKSR 159 (263)
T ss_pred EEecccHHHHhCHHHHHHHHHH------------cCCeEEEecCCCH---HHHHHHHHHHHHcCCC-EEEEECCCCCHHH
Confidence 3455444 5699998887764 4577777777544 3567888889999986 56666654 56
Q ss_pred HHHHHHhcCEEEe-cCCCCCC----ccchHHHHHH-----HcCCcEEEeCCC-----CcccceecCcceeeec
Q 017085 257 VAPYLAAIDVLVQ-NSQAWGE----CFGRITIEAM-----AFQLPVLGTAAG-----GTTEIVVNGTTGLLHP 314 (377)
Q Consensus 257 ~~~~~~~adv~l~-ps~~~~e----~~~~~~~Ea~-----a~g~PvI~s~~~-----~~~e~~~~~~~g~~~~ 314 (377)
+..+.+.++-|++ -|..... ..+..+-|.+ ..++|+++ +.| ...++...|..|.++-
T Consensus 160 i~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v-GFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 160 IQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL-GFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred HHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE-ECCcCCHHHHHHHHhcCCCEEEEC
Confidence 8888899994332 2331011 1223334444 56888876 222 1223333346777765
No 446
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=26.91 E-value=3.1e+02 Score=24.66 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=46.9
Q ss_pred EEEec-CCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 219 VIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 219 ~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
+|+|. +.-......+.+++++++.|....+...|.. +.+ ..+...|++|+.+. . -+++-.+-.+-+|||++
T Consensus 237 IlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL-~nf~eiD~fV~~aC--P---r~sidd~~~f~kPvlTP 310 (332)
T TIGR00322 237 VVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKL-LMFDQIDVFVQVAC--P---RIAIDDGYLFNKPLLTP 310 (332)
T ss_pred EEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH-hCCCCcCEEEEecC--C---CceecchhhcCCccccH
Confidence 45554 3333345678888888988887777777765 334 33456899998776 2 24566677777787765
No 447
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=26.79 E-value=1.6e+02 Score=24.14 Aligned_cols=22 Identities=5% Similarity=-0.040 Sum_probs=15.9
Q ss_pred EEEEeccccc-cchhHHHHHHHH
Q 017085 179 LFAIINSVSR-GKGQDLFLHSFY 200 (377)
Q Consensus 179 ~i~~~G~~~~-~Kg~~~ll~a~~ 200 (377)
+.+|+||+.| ..|+..+|..+.
T Consensus 6 ~~v~iGRFQPfH~GHl~~I~~al 28 (196)
T PRK13793 6 YLVFIGRFQPFHLAHMQTIEIAL 28 (196)
T ss_pred EEEEEecCCCCcHHHHHHHHHHH
Confidence 4578999988 568777666544
No 448
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=26.76 E-value=1.6e+02 Score=27.37 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=39.4
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccch---------hHHHhh--hcccEEEEcCc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------ETINTA--LKADLIVLNTA 66 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~Div~~~~~ 66 (377)
.|++.|+..|-+|.+.+.+..+..+... ..+...|++++..+.. ...+.. .+||+|+=...
T Consensus 51 ~l~~~L~~~GA~v~~~~~np~stqd~va----a~l~~~gi~v~a~~~~~~~~y~~~~~~~l~~~~~~p~~i~DdGg 122 (413)
T cd00401 51 VLIETLVALGAEVRWSSCNIFSTQDHAA----AAIAAAGIPVFAWKGETLEEYWWCIEQALKFPDGEPNMILDDGG 122 (413)
T ss_pred HHHHHHHHcCCEEEEEcCCCccchHHHH----HHHHhcCceEEEEcCCCHHHHHHHHHHHHhccCCCCcEEEecch
Confidence 3788999999999999877655444443 4455679999875422 111111 27888885543
No 449
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=26.69 E-value=1.9e+02 Score=21.99 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=20.5
Q ss_pred cchHHHHHHHcCCcEE-EeCCCCcccceec
Q 017085 278 FGRITIEAMAFQLPVL-GTAAGGTTEIVVN 306 (377)
Q Consensus 278 ~~~~~~Ea~a~g~PvI-~s~~~~~~e~~~~ 306 (377)
.+-++-+-...|+||| +||+...++.++.
T Consensus 65 ~~evi~~I~~~G~PviVAtDV~p~P~~V~K 94 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATDVSPPPETVKK 94 (138)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCcHHHHH
Confidence 3444556678999977 6788888887754
No 450
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=26.63 E-value=3.1e+02 Score=21.35 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=33.4
Q ss_pred HHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC-----cccceecCcceeeecC-CCCChhHHHHHHHHHhh
Q 017085 261 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG-----TTEIVVNGTTGLLHPV-GKEGITPLAKNIVKLAT 332 (377)
Q Consensus 261 ~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~-----~~e~~~~~~~g~~~~~-~~~~~~~la~~i~~l~~ 332 (377)
+..+|+++..+. .+.....+.+....+.||-..+.+. ++..+..+..-+-+.. +. .-.++..|.+-++
T Consensus 68 l~~a~lViaaT~--d~e~N~~i~~~a~~~~~vn~~d~~~~~~f~~pa~v~~~~l~iaisT~G~--sP~la~~lr~~ie 141 (157)
T PRK06719 68 IKDAHLIYAATN--QHAVNMMVKQAAHDFQWVNVVSDGTESSFHTPGVIRNDEYVVTISTSGK--DPSFTKRLKQELT 141 (157)
T ss_pred CCCceEEEECCC--CHHHHHHHHHHHHHCCcEEECCCCCcCcEEeeeEEEECCeEEEEECCCc--ChHHHHHHHHHHH
Confidence 567888887765 3334444444444455666555443 3333444433233322 22 3455555554443
No 451
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=26.61 E-value=96 Score=24.07 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=34.0
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCC-----cEEEecCcCCHHHHH
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-----RVHFVNKTLTVAPYL 261 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-----~v~~~g~~~~~~~~~ 261 (377)
..........+.+.++..+.+ |+ ++.+|+.........+.+++.+++....+ .|.+.. ++++.+|
T Consensus 43 ~~~~~~~~~~~~l~~~i~~~k------P~--vI~v~g~~~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v~--~~~A~lY 112 (150)
T PF14639_consen 43 RDRERKEEDMERLKKFIEKHK------PD--VIAVGGNSRESRKLYDDVRDIVEELDEDEQMPPIPVVIVD--DEVARLY 112 (150)
T ss_dssp T-SS-SHHHHHHHHHHHHHH--------S--EEEE--SSTHHHHHHHHHHHHHHHTTB-TTS-B--EEE-----TTHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcC------Ce--EEEEcCCChhHHHHHHHHHHHHHHhhhcccCCCceEEEEC--cHHHHHH
Confidence 344444555555555544211 44 44454433333345667777777764221 122222 7888999
Q ss_pred HhcCEEE
Q 017085 262 AAIDVLV 268 (377)
Q Consensus 262 ~~adv~l 268 (377)
++|...-
T Consensus 113 ~~S~rA~ 119 (150)
T PF14639_consen 113 SNSKRAA 119 (150)
T ss_dssp HTSHHHH
T ss_pred hcCHHHH
Confidence 8887654
No 452
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=26.58 E-value=5.1e+02 Score=25.29 Aligned_cols=74 Identities=23% Similarity=0.366 Sum_probs=43.0
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc---CCHHHHHHh------------------cCEEEecCCCCC
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAA------------------IDVLVQNSQAWG 275 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~---~~~~~~~~~------------------adv~l~ps~~~~ 275 (377)
.++++|... ..-..+.+++.+.++.+.|.+.|-. -|+..+..+ +|+.|.--.
T Consensus 238 ~il~iGHnv----~~~~~i~dyleE~~l~d~vE~~GlccTA~D~tRy~~~aKvvGpls~ql~~IrsG~aDViVvDEq--- 310 (772)
T COG1152 238 TILVIGHNV----APGTYIMDYLEENGLEDEVELAGLCCTAIDMTRYDEAAKVVGPLSKQLKVIRSGKADVIVVDEQ--- 310 (772)
T ss_pred eEEEecccc----ccchHHHHHHHhccchhhhheeeeeeeccccchhhhhhhhhchhhhhhhhhhcCCceEEEeccc---
Confidence 344555532 2346677788888888888888731 223333333 455553111
Q ss_pred CccchHHHHHHHcCCcEEEeCC
Q 017085 276 ECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 276 e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
--=.=.+.|++-.|.|+|+|+.
T Consensus 311 Cir~Dileea~k~g~~vIat~~ 332 (772)
T COG1152 311 CIREDILEEASKLGIPVIATNE 332 (772)
T ss_pred ccchhHHHHHhccCCceEechh
Confidence 0112356789999999999863
No 453
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=26.55 E-value=1.5e+02 Score=26.25 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=36.7
Q ss_pred hhHHHhcCceEEEEEecCCCcch----hHhhhhhhhhcccCceEEEccch-----hHHHhhhcccEEEEcC
Q 017085 4 AFLLRGVGTKVNWITIQKPSEED----EVIYSLEHKMWDRGVQVISAKGQ-----ETINTALKADLIVLNT 65 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Div~~~~ 65 (377)
.++|.+.||+|..+.+..+.... .....+.......|++++..... ...++..+||++++..
T Consensus 16 L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~~~Dliv~~~ 86 (313)
T TIGR00460 16 LEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVRELKPDVIVVVS 86 (313)
T ss_pred HHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHHhhCCCEEEEcc
Confidence 46777889998766543322111 11112445555678888664433 3456678999999864
No 454
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=26.44 E-value=1.1e+02 Score=21.89 Aligned_cols=51 Identities=18% Similarity=0.155 Sum_probs=28.4
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc-------cchhHHHhhhcccEEEEc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-------KGQETINTALKADLIVLN 64 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~Div~~~ 64 (377)
++++.|.+.|+++. .+... ...+...|+.+... ..+...++..++|+|+..
T Consensus 17 ~~~~~l~~~G~~l~-aT~gT-----------~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~ 74 (110)
T cd01424 17 EIAKRLAELGFKLV-ATEGT-----------AKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINT 74 (110)
T ss_pred HHHHHHHHCCCEEE-EchHH-----------HHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEEC
Confidence 35677778888774 22221 22333456554221 234555667788888875
No 455
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=26.37 E-value=1.5e+02 Score=25.55 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=16.5
Q ss_pred chhHHHhhhcccEEEEcCchhhh
Q 017085 48 GQETINTALKADLIVLNTAVAGK 70 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~ 70 (377)
....+++...||+|..+...+..
T Consensus 121 Av~H~i~l~sPdiiflQEV~p~~ 143 (349)
T KOG2756|consen 121 AVCHYLALYSPDVIFLQEVIPPY 143 (349)
T ss_pred HHHHHHHhcCCCEEEEeecCchh
Confidence 34566778899999998765443
No 456
>PRK09190 hypothetical protein; Provisional
Probab=26.26 E-value=3.1e+02 Score=22.90 Aligned_cols=68 Identities=13% Similarity=0.019 Sum_probs=44.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHh------cCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQ------KKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 287 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~------~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a 287 (377)
..+.|+|+...... ...+.+.+.++. ++++ +...+..+++...+....+.+..-. ..+|.-.+++.+.
T Consensus 126 gk~~Lvi~A~DaS~--~t~kKl~~~~~~~~~~~~~~Vp--~v~~~tk~eLg~AlGr~~~~~vav~--d~gfA~~l~~~~~ 199 (220)
T PRK09190 126 GEAAALIHASDGAA--DGKRKLDQARRALVHETGREIP--VIGLFTAAELGLAFGRENVIHAALL--AGGAAERVVKRAQ 199 (220)
T ss_pred CCceEEEEeccCCh--hHHHHHHHHHHhhcccccCCcc--EEEecCHHHHHHHhCCCceeEEEEc--ChHHHHHHHHHHH
Confidence 55788877653222 357778887776 5544 5555555889888887766655554 5677777765553
No 457
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=26.20 E-value=3.9e+02 Score=22.36 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=26.5
Q ss_pred HHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 257 VAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 257 ~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
...-++ .||++++=+. ..+.-+.-.=+-+.|+|||.++
T Consensus 170 Aa~~L~~~gadlIvLDCm--GYt~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 170 AARELAEQGADLIVLDCM--GYTQEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHHHHHhcCCCEEEEECC--CCCHHHHHHHHHHhCCCEEeHH
Confidence 344566 7899997766 4444455555667899999886
No 458
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=26.04 E-value=63 Score=24.47 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.6
Q ss_pred cHhhHHHhcCceEEEEEec
Q 017085 2 ELAFLLRGVGTKVNWITIQ 20 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~ 20 (377)
.|+..|+++||+|+|..+.
T Consensus 18 Yl~~~Lk~~G~~v~Va~np 36 (139)
T PF09001_consen 18 YLSYKLKKKGFEVVVAGNP 36 (139)
T ss_dssp HHHHHHHCTTEEEEEEE-H
T ss_pred HHHHHHHhcCCeEEEecCH
Confidence 4678899999999999854
No 459
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=25.94 E-value=5.2e+02 Score=23.69 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=68.0
Q ss_pred HHHHHhCCCCCCeEEEEeccc--cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcC
Q 017085 166 HVRESLGVRNEDLLFAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 243 (377)
Q Consensus 166 ~~r~~~~~~~~~~~i~~~G~~--~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 243 (377)
+++++.+. +++.+....+ +...|.+..++++.+.. +++.. +..+-.+.|+|...... ....+++++.+.+|
T Consensus 99 ~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~~~~--~~~~~-~~~~~~VNiiG~~~~~~-~d~~el~~lL~~~G 171 (398)
T PF00148_consen 99 ELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALAEQL--VKPPE-EKKPRSVNIIGGSPLGP-GDLEELKRLLEELG 171 (398)
T ss_dssp HHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHHHHH--TTGTT-TTSSSEEEEEEESTBTH-HHHHHHHHHHHHTT
T ss_pred HhhcccCC---cEEEEECCCccCCccchHHHHHHHHHhhc--ccccc-cCCCCceEEecCcCCCc-ccHHHHHHHHHHCC
Confidence 34455544 4555555556 33457777666665432 12111 12334778888764431 35788999999999
Q ss_pred CCCcEEEecCcCCHHH--HHHhcCEEEecCCCCCCccchH-HHHHHHc--CCcEEEeC
Q 017085 244 IQDRVHFVNKTLTVAP--YLAAIDVLVQNSQAWGECFGRI-TIEAMAF--QLPVLGTA 296 (377)
Q Consensus 244 ~~~~v~~~g~~~~~~~--~~~~adv~l~ps~~~~e~~~~~-~~Ea~a~--g~PvI~s~ 296 (377)
++-+..+.+.. .+.+ -+..|++.+..+. .+.. +.|.|.- |+|.+...
T Consensus 172 i~v~~~~~~~~-t~~e~~~~~~A~lniv~~~-----~~~~~~a~~L~e~~giP~~~~~ 223 (398)
T PF00148_consen 172 IEVNAVFPGGT-TLEEIRKAPEAALNIVLCP-----EGGPYAAEWLEERFGIPYLYFP 223 (398)
T ss_dssp EEEEEEEETTB-CHHHHHHGGGSSEEEESSC-----CHHHHHHHHHHHHHT-EEEEEC
T ss_pred CceEEEeCCCC-CHHHHHhCCcCcEEEEecc-----chhhHHHHHHHHHhCCCeeecc
Confidence 97677775653 3444 3456677666554 2333 7777764 99999843
No 460
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=25.93 E-value=2e+02 Score=25.10 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=12.7
Q ss_pred HHHhcCceEEEEEecCC
Q 017085 6 LLRGVGTKVNWITIQKP 22 (377)
Q Consensus 6 ~L~~~G~eV~v~~~~~~ 22 (377)
.+.++|++|++++...+
T Consensus 20 ~~a~~G~~V~vv~lT~G 36 (284)
T TIGR03445 20 RYAARGADVTVVTCTLG 36 (284)
T ss_pred HHHHCCCeEEEEEecCC
Confidence 35568999999995543
No 461
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=25.75 E-value=3.7e+02 Score=21.94 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=39.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEEE-ecCC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLV-QNSQ 272 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~l-~ps~ 272 (377)
.|+-+.|.++|.. +...+..+.+++.|.+ -|.++|.. ..+.++...+|+.+ +|+.
T Consensus 110 gDvli~iS~SG~s---~~v~~a~~~Ak~~G~~-vI~IT~~~~s~l~~l~~~~D~~i~ip~~ 166 (196)
T PRK10886 110 GDVLLAISTRGNS---RDIVKAVEAAVTRDMT-IVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_pred CCEEEEEeCCCCC---HHHHHHHHHHHHCCCE-EEEEeCCCCChhhhccccCCEEEEcCCC
Confidence 6787777777643 3456667778888875 57777765 66777777899866 5654
No 462
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=25.67 E-value=76 Score=26.60 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=16.9
Q ss_pred cHhhHHHhcCceEEEEEecCC
Q 017085 2 ELAFLLRGVGTKVNWITIQKP 22 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~ 22 (377)
.+++.|++.|.+|+++-..+.
T Consensus 61 amve~L~~~GvdV~ifddtg~ 81 (318)
T COG4874 61 AMVEGLRQAGVDVVIFDDTGQ 81 (318)
T ss_pred HHHHHHHhcCceEEEeecCCC
Confidence 367899999999999975443
No 463
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=25.65 E-value=5.1e+02 Score=23.56 Aligned_cols=53 Identities=6% Similarity=0.044 Sum_probs=32.1
Q ss_pred CCeEEEEEecCCCc-ccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 214 PSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 214 ~~~~l~i~G~~~~~-~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
-++.+.++++..-. .++..+..++.+++.|. .+.+. +++.+.+..+|++...+
T Consensus 200 ~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~--~~~~~---~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 200 FGMDVTLAHPEGYHLLPEVIEVAKKNAAENGG--KFNIV---NSMDEAFKDADIVYPKS 253 (357)
T ss_pred cCCEEEEECCCcccCCHHHHHHHHHHHHHcCC--eEEEE---cCHHHHhCCCCEEEECC
Confidence 36889999874211 11223334445555553 24332 67889999999988664
No 464
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=25.61 E-value=3.1e+02 Score=22.15 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=42.7
Q ss_pred CEEEecCCCCCCccchHHHHHHH--cCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHH
Q 017085 265 DVLVQNSQAWGECFGRITIEAMA--FQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGK 342 (377)
Q Consensus 265 dv~l~ps~~~~e~~~~~~~Ea~a--~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~ 342 (377)
+++++.... ..||..+-+|++. .|+|||+-- ....+ .+.+..++.+.++|.+.+.+.-+
T Consensus 71 rvVlLdGIt-~aGFNivDi~~l~~~tg~PVi~V~----------------~k~P~--~e~i~~Al~k~f~d~e~R~rii~ 131 (185)
T COG1628 71 RVVLLDGIT-FAGFNIVDIEALYKETGLPVIVVY----------------RKKPD--IERIESALRKHFDDAEERIRIIE 131 (185)
T ss_pred cEEEECCee-eccceEecHHHHHHhhCCcEEEEE----------------ecCCC--HHHHHHHHHHhCCCHHHHHHHHH
Confidence 556666553 7788888888886 889998741 12223 78888889888888887765544
Q ss_pred HH
Q 017085 343 RG 344 (377)
Q Consensus 343 ~~ 344 (377)
.+
T Consensus 132 ~~ 133 (185)
T COG1628 132 SA 133 (185)
T ss_pred hC
Confidence 43
No 465
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.57 E-value=1.8e+02 Score=27.28 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=34.3
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTA 66 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~ 66 (377)
.+|+.|.+.|++|+++....... .. .....+...|+.++....... ...++|+|+....
T Consensus 19 ~~A~~l~~~G~~V~~~d~~~~~~---~~-~~~~~l~~~~~~~~~~~~~~~--~~~~~d~vv~~~g 77 (450)
T PRK14106 19 ALAKFLKKLGAKVILTDEKEEDQ---LK-EALEELGELGIELVLGEYPEE--FLEGVDLVVVSPG 77 (450)
T ss_pred HHHHHHHHCCCEEEEEeCCchHH---HH-HHHHHHHhcCCEEEeCCcchh--HhhcCCEEEECCC
Confidence 47899999999999986543111 11 111223445666654333322 2356998888653
No 466
>PF13169 Poxvirus_B22R_N: Poxvirus B22R protein N-terminal
Probab=25.53 E-value=2.4e+02 Score=19.81 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=22.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcc
Q 017085 345 YERVKEIFQEHHMAERIAVVLKEVLKKS 372 (377)
Q Consensus 345 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 372 (377)
+..+...|+|..+.+.+.+.|.......
T Consensus 43 ~~~l~~~fnWt~I~~~V~~~F~~~C~~~ 70 (92)
T PF13169_consen 43 KERLESKFNWTSIRESVKDEFIKKCNNN 70 (92)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhcCC
Confidence 3456788999999999999988765543
No 467
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=25.52 E-value=1.6e+02 Score=23.71 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHh
Q 017085 191 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 241 (377)
Q Consensus 191 g~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~ 241 (377)
+...+.+++.+|. +++++..+++|+|.+--...++++.+++..
T Consensus 156 d~~~a~~sl~RLa--------~~~~fe~lLvGdGwpi~~~~r~rl~~L~~~ 198 (199)
T PF14597_consen 156 DPTEARASLRRLA--------AYPDFEWLLVGDGWPIFRDARQRLRELVAT 198 (199)
T ss_dssp -HHHHHHHHHHHH--------T-TT--EEEESBB--B-S-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh--------ccccccEEeecCCchhhhhHHHHHHHHHhc
Confidence 5666677776654 348999999999976443456677766553
No 468
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=25.46 E-value=3.2e+02 Score=22.79 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=38.1
Q ss_pred CCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC
Q 017085 173 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 244 (377)
Q Consensus 173 ~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 244 (377)
+++.+++|.+ + -..|.+++....+.+ .+++.+|++...+. ...+.++++.++++|+
T Consensus 49 i~~~Dl~I~y-~-----lHPDl~~~l~~~~~e---------~g~kavIvp~~~~~-~g~~~~lk~~~e~~gi 104 (217)
T PF02593_consen 49 IPEADLLIAY-G-----LHPDLTYELPEIAKE---------AGVKAVIVPSESPK-PGLRRQLKKQLEEFGI 104 (217)
T ss_pred CCCCCEEEEe-c-----cCchhHHHHHHHHHH---------cCCCEEEEecCCCc-cchHHHHHHHHHhcCc
Confidence 5566776654 2 235777777765543 57888999886554 3467788888888775
No 469
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=25.45 E-value=3.5e+02 Score=21.51 Aligned_cols=88 Identities=8% Similarity=0.119 Sum_probs=51.8
Q ss_pred HHhcCEEEecCCCCCCccchHHHHHH-HcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHH
Q 017085 261 LAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLT 339 (377)
Q Consensus 261 ~~~adv~l~ps~~~~e~~~~~~~Ea~-a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~ 339 (377)
+..||+++.|-. +|= =.||+ .+|+-||+-|...+.-.-+. .-+.- ++.+..++-.+...-..++.
T Consensus 87 Iy~ADVVLVPLE---DGD---R~EAL~~mGK~VIaIDLNPLSRTar~---AtitI-----VDni~RA~p~~~~~~~~lk~ 152 (178)
T PF02006_consen 87 IYSADVVLVPLE---DGD---RTEALVKMGKTVIAIDLNPLSRTART---ATITI-----VDNITRAIPNMIEFARELKK 152 (178)
T ss_pred ceeccEEEeccC---CCc---HHHHHHHcCCeEEEEeCCCccccccc---Cceee-----ehhHHHHHHHHHHHHHHHhc
Confidence 457899999985 332 24554 68999999986655443321 11111 45667776666554444444
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 017085 340 MGKRGYERVKEIFQEHHMAERIA 362 (377)
Q Consensus 340 ~~~~~~~~~~~~f~~~~~~~~~~ 362 (377)
+.....+.+.+.|+-+.......
T Consensus 153 ~~~~el~~iv~~~dN~~~L~~al 175 (178)
T PF02006_consen 153 KDREELEEIVKNYDNKKNLSEAL 175 (178)
T ss_pred CCHHHHHHHHHhcCcHHHHHHHH
Confidence 44444455556788777665443
No 470
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=25.35 E-value=1.7e+02 Score=26.98 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=50.1
Q ss_pred cCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHH
Q 017085 264 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKR 343 (377)
Q Consensus 264 adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~ 343 (377)
++..+-|+....-.|....-|+|- -++.+++.|++.. ...+++.++.+-........-..+
T Consensus 294 ~~~~l~p~e~NPLrf~p~~~e~l~--------------~l~~~~k~~~LSa-----~aAvads~~dL~~H~~a~~~a~~a 354 (430)
T COG3456 294 LQTMLRPSEDNPLRFAPDYDEALE--------------TLFAEGKSGHLSA-----EAAVADSFRDLRAHELAAQAAVQA 354 (430)
T ss_pred HHhhccccccCCcccCCCHHHHHH--------------HHHhcCCccccCh-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665323334444445542 2444555666654 678888888887655544444556
Q ss_pred HHHHHHHhcCHHHHHHHHHH
Q 017085 344 GYERVKEIFQEHHMAERIAV 363 (377)
Q Consensus 344 ~~~~~~~~f~~~~~~~~~~~ 363 (377)
+.....++|||+.+..++..
T Consensus 355 Alr~lL~~FsPq~L~~Rf~~ 374 (430)
T COG3456 355 ALRALLDRFSPQALLRRFDH 374 (430)
T ss_pred HHHHHHHccCHHHHHHhccc
Confidence 66667788999999887753
No 471
>PRK06849 hypothetical protein; Provisional
Probab=25.29 E-value=43 Score=30.71 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=34.8
Q ss_pred CcHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEE---------ccchhHHHhhhcccEEEEcCch
Q 017085 1 MELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS---------AKGQETINTALKADLIVLNTAV 67 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~Div~~~~~~ 67 (377)
+++++.|.+.||+|+++........ ...... ...-.++ ...+..+.+++++|+|+.....
T Consensus 18 l~iar~l~~~G~~Vi~~d~~~~~~~-~~s~~~------d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP~~e~ 86 (389)
T PRK06849 18 LELARLFHNAGHTVILADSLKYPLS-RFSRAV------DGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIPTCEE 86 (389)
T ss_pred HHHHHHHHHCCCEEEEEeCCchHHH-HHHHhh------hheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEECChH
Confidence 3689999999999999976542211 110000 1111121 1234456677889999987654
No 472
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=25.23 E-value=78 Score=22.47 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=23.8
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceE
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV 43 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (377)
+..+.|+++|..+.++|.+....... +...+...|+.+
T Consensus 21 e~l~~L~~~g~~~~~lTNns~~s~~~----~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 21 EALDALRERGKPVVFLTNNSSRSREE----YAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHHTTSEEEEEES-SSS-HHH----HHHHHHHTTTT-
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCHHH----HHHHHHhcCcCC
Confidence 45688999999999999776544332 334445566653
No 473
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.22 E-value=4e+02 Score=23.01 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=35.1
Q ss_pred HhcCEEEecCCCCCCccchHHHHHHHc-----CCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 262 AAIDVLVQNSQAWGECFGRITIEAMAF-----QLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 262 ~~adv~l~ps~~~~e~~~~~~~Ea~a~-----g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
..+|+++.-. .+| +++.|+.. .+|++.-+.+ |..|++.+.. .+++.+++.+++++
T Consensus 38 ~~~D~vi~lG---GDG---T~L~a~~~~~~~~~~pilgIn~~--------G~lGFL~~~~---~~~~~~~l~~i~~g 97 (264)
T PRK03501 38 KNANIIVSIG---GDG---TFLQAVRKTGFREDCLYAGISTK--------DQLGFYCDFH---IDDLDKMIQAITKE 97 (264)
T ss_pred CCccEEEEEC---CcH---HHHHHHHHhcccCCCeEEeEecC--------CCCeEcccCC---HHHHHHHHHHHHcC
Confidence 3468777433 233 45555432 5787777763 3578887653 78899999888764
No 474
>PRK08374 homoserine dehydrogenase; Provisional
Probab=25.17 E-value=3.8e+02 Score=24.12 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=31.3
Q ss_pred CHHHHH--HhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC
Q 017085 256 TVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 256 ~~~~~~--~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~ 298 (377)
+..+++ ..+|+++-.+. .+...-....++..|++||+.+.+
T Consensus 82 ~~~ell~~~~~DVvVd~t~--~~~a~~~~~~al~~G~~VVtanK~ 124 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTN--DKNAHEWHLEALKEGKSVVTSNKP 124 (336)
T ss_pred CHHHHHhcCCCCEEEECCC--cHHHHHHHHHHHhhCCcEEECCHH
Confidence 455666 36899987765 666667777999999999988765
No 475
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=25.09 E-value=2.5e+02 Score=23.13 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=34.8
Q ss_pred CccchHHHHHHHc---CCcEEEe-CCCCcc----cceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 276 ECFGRITIEAMAF---QLPVLGT-AAGGTT----EIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 276 e~~~~~~~Ea~a~---g~PvI~s-~~~~~~----e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
+.-|+.+++.+.. ++|||+- ...... .+...|..|++..+.+ .+++.++|...+..
T Consensus 52 ~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~--~~eL~~aI~~v~~G 115 (207)
T PRK11475 52 RREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKAST--LEILQQELFLSLNG 115 (207)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCC--HHHHHHHHHHHHCC
Confidence 3346667766643 4565543 222111 1123577899988877 99999999988763
No 476
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=25.02 E-value=1.5e+02 Score=23.22 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=33.0
Q ss_pred cHhhHHHhcCceEEEEEecCC--CcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcC
Q 017085 2 ELAFLLRGVGTKVNWITIQKP--SEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNT 65 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~ 65 (377)
.++..|.+.|.+++++++.+- +................|..+.-........ .+.|+|+...
T Consensus 18 Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l--~~aDvvy~~~ 81 (158)
T PF00185_consen 18 SLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEAL--KGADVVYTDR 81 (158)
T ss_dssp HHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHH--TT-SEEEEES
T ss_pred HHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhc--CCCCEEEEcC
Confidence 467788899999999987762 2222233222333333454443334443332 3477777753
No 477
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.92 E-value=3.1e+02 Score=23.91 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=19.4
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
|....+++|+.+... .|.+...+.++++|+.-..+-++
T Consensus 33 P~Laii~vg~d~as~-~Yv~~k~k~a~~~Gi~~~~~~l~ 70 (278)
T PRK14172 33 PKIASILVGNDGGSI-YYMNNQEKVANSLGIDFKKIKLD 70 (278)
T ss_pred ceEEEEEeCCCHHHH-HHHHHHHHHHHHcCCEEEEEECC
Confidence 445555666543222 24555566666666654443333
No 478
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=24.90 E-value=2.1e+02 Score=26.04 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=36.7
Q ss_pred HHHHHHHcC-CcEEEeCCCCcccceecCcceeeec-CCCCChhHHHHHHHHHhhCHHHHHHH
Q 017085 281 ITIEAMAFQ-LPVLGTAAGGTTEIVVNGTTGLLHP-VGKEGITPLAKNIVKLATHVERRLTM 340 (377)
Q Consensus 281 ~~~Ea~a~g-~PvI~s~~~~~~e~~~~~~~g~~~~-~~~~~~~~la~~i~~l~~~~~~~~~~ 340 (377)
++.-|+-+| +|||... +...+++-+ ..-+.++ ..+ +++||+-|+++-+|+..+.+.
T Consensus 269 Kfw~al~~gsVPVvlg~-~n~e~fvP~-~SfI~vdDF~s--~~ela~ylk~L~~n~~~Y~~Y 326 (372)
T KOG2619|consen 269 KFWNALDAGSVPVVLGP-PNYENFVPP-DSFIHVDDFQS--PQELAAYLKKLDKNPAAYLSY 326 (372)
T ss_pred HHHhhhhcCcccEEECC-ccccccCCC-cceEehhhcCC--HHHHHHHHHHhhcCHHHHHHH
Confidence 344566666 4566555 666776653 2333333 344 999999999999999877654
No 479
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=24.82 E-value=3.8e+02 Score=21.76 Aligned_cols=107 Identities=10% Similarity=0.051 Sum_probs=55.7
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH-----cC
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 289 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a-----~g 289 (377)
+++++.+.. .....+....+..|. .+.......+....+. ..|++++-..- ...-|..+++.+. ..
T Consensus 4 ~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~~~~~~~~~~dlvild~~l-~~~~g~~~~~~l~~~~~~~~ 76 (229)
T PRK10161 4 RILVVEDEA----PIREMVCFVLEQNGF--QPVEAEDYDSAVNQLNEPWPDLILLDWML-PGGSGIQFIKHLKRESMTRD 76 (229)
T ss_pred eEEEEcCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHHHHHhccccCC
Confidence 455565542 234455555554443 2332222223333332 25777654331 2334555565554 34
Q ss_pred CcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|.-. ... ..+.+..|..+++..+.+ .+++.+.|..++.
T Consensus 77 ~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~--~~~L~~~i~~~~~ 121 (229)
T PRK10161 77 IPVVMLTARGEEEDRVRGLETGADDYITKPFS--PKELVARIKAVMR 121 (229)
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHh
Confidence 6766542 222 223344567788988877 8899988887654
No 480
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=24.80 E-value=67 Score=25.83 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.6
Q ss_pred cHhhHHHhcCceEEEEEecC
Q 017085 2 ELAFLLRGVGTKVNWITIQK 21 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~ 21 (377)
++++.|++.|++|.++.+..
T Consensus 17 ~lir~L~~~g~~V~vv~T~~ 36 (181)
T TIGR00421 17 RLLEVLKEAGVEVHLVISDW 36 (181)
T ss_pred HHHHHHHHCCCEEEEEECcc
Confidence 57899999999999998775
No 481
>PLN02527 aspartate carbamoyltransferase
Probab=24.64 E-value=5e+02 Score=23.02 Aligned_cols=88 Identities=11% Similarity=0.232 Sum_probs=50.9
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC
Q 017085 165 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 244 (377)
Q Consensus 165 ~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 244 (377)
-.+++.+|- -+...|.++|-....+=...++.++..+ .++.+.++++..-. ..+.+.+.+++.|.
T Consensus 140 ~Ti~e~~g~-l~g~kva~vGD~~~~rv~~Sl~~~~~~~-----------~g~~v~~~~P~~~~---~~~~~~~~~~~~g~ 204 (306)
T PLN02527 140 YTIQREIGR-LDGIKVGLVGDLANGRTVRSLAYLLAKY-----------EDVKIYFVAPDVVK---MKDDIKDYLTSKGV 204 (306)
T ss_pred HHHHHHhCC-cCCCEEEEECCCCCChhHHHHHHHHHhc-----------CCCEEEEECCCccC---CCHHHHHHHHHcCC
Confidence 445666663 3457888999553223344455544421 47899999874211 12344445554332
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
++.+. +++.+.++.||++.....
T Consensus 205 --~~~~~---~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 205 --EWEES---SDLMEVASKCDVLYQTRI 227 (306)
T ss_pred --EEEEE---cCHHHHhCCCCEEEECCc
Confidence 33332 578899999999887543
No 482
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=24.62 E-value=3.7e+02 Score=21.52 Aligned_cols=66 Identities=17% Similarity=0.091 Sum_probs=39.5
Q ss_pred cCEEEecCCCCCCccchHHHHHHHc---CCcEEEeC-CCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 264 IDVLVQNSQAWGECFGRITIEAMAF---QLPVLGTA-AGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 264 adv~l~ps~~~~e~~~~~~~Ea~a~---g~PvI~s~-~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.|++++.... ...-|..+++.+.. ..|+|.-. .... ...+..|..+++..+.+ .+++...+..++.
T Consensus 45 ~dlvild~~l-~~~~g~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~--~~~l~~~i~~~~~ 117 (219)
T PRK10336 45 YDAVILDLTL-PGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFA--LIEVAARLEALMR 117 (219)
T ss_pred CCEEEEECCC-CCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCC--HHHHHHHHHHHHh
Confidence 5777764331 23345566665543 45666543 2221 23344567788888877 8999988887654
No 483
>PLN03007 UDP-glucosyltransferase family protein
Probab=24.62 E-value=50 Score=31.42 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.4
Q ss_pred CcHhhHHHhcCceEEEEEecC
Q 017085 1 MELAFLLRGVGTKVNWITIQK 21 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~~ 21 (377)
++||+.|..+|++||++++..
T Consensus 23 L~LAk~L~~rG~~VT~vtt~~ 43 (482)
T PLN03007 23 LDMAKLFSSRGAKSTILTTPL 43 (482)
T ss_pred HHHHHHHHhCCCEEEEEECCC
Confidence 479999999999999999654
No 484
>TIGR03795 chp_BMA0021 conserved hypothetical protein, BMA_0021 family. Members of this protein family are found sparsely, mostly in members of the genus Burkholderia. Members often occur as tandem homologous genes, such as BMA_0021 and BMA_0022 in Burkholderia mallei ATCC 23344. The genes regularly are encoded near the so-called docking protein of TOMM (thiazole/oxazole-modified microcins) biosynthetic clusters, suggesting a role in bacteriocin biosynthesis. The function is unknown.
Probab=24.57 E-value=1.2e+02 Score=22.25 Aligned_cols=34 Identities=9% Similarity=-0.000 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCH
Q 017085 321 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 354 (377)
Q Consensus 321 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~ 354 (377)
..+..+|.+.++|++.++++-......+.+.|.+
T Consensus 15 ~v~lraIA~AW~DpaFr~eLl~DPk~~L~e~Fgy 48 (114)
T TIGR03795 15 AVYLRAIALAWHSPEFKDELLADPVDALEKYFDY 48 (114)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCHHHHHHHHhCC
Confidence 3456788888999999999988877777777765
No 485
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=24.55 E-value=3.1e+02 Score=24.38 Aligned_cols=52 Identities=6% Similarity=0.074 Sum_probs=32.7
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhcccC---CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 186 VSRGKGQDLFLHSFYESLELIKEKKLEV---PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 186 ~~~~Kg~~~ll~a~~~l~~~l~~~~~~~---~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
+....+++.+++......+ ++ ++++++++|+. +.+++.+.+.+...++.+..
T Consensus 10 MGGD~~P~~~v~ga~~al~-------~~~~~~~~~i~LvG~~--------~~i~~~l~~~~~~~ri~iv~ 64 (316)
T PRK13846 10 MGGDHSPLVVWEVLGDVLL-------SSSSEQPVEFTVFASS--------EVHHQILSNSPLSRSPRIIT 64 (316)
T ss_pred cCCCcChHHHHHHHHHHHH-------hcCCCCCeEEEEEeCH--------HHHHHHHHhCCCcCceEEEe
Confidence 4456778888887766544 33 66999999985 44555555443333555554
No 486
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.48 E-value=4.2e+02 Score=23.16 Aligned_cols=53 Identities=13% Similarity=0.286 Sum_probs=36.0
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEEEecC
Q 017085 213 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 213 ~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~l~ps 271 (377)
..+-+.+++|.+.- .-.-+..++.+.|- .|++.... .++.+.++.||+++..+
T Consensus 157 l~Gk~vvViG~gg~----vGkpia~~L~~~ga--tVtv~~~~t~~L~~~~~~aDIvI~At 210 (283)
T PRK14192 157 LAGKHAVVVGRSAI----LGKPMAMMLLNANA--TVTICHSRTQNLPELVKQADIIVGAV 210 (283)
T ss_pred CCCCEEEEECCcHH----HHHHHHHHHHhCCC--EEEEEeCCchhHHHHhccCCEEEEcc
Confidence 35668999999831 33444444455553 56665554 77889999999999876
No 487
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=24.46 E-value=3.8e+02 Score=21.67 Aligned_cols=96 Identities=11% Similarity=0.055 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCc---cchHHHHHHH---cCCcEEEeC-CCC--
Q 017085 231 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGEC---FGRITIEAMA---FQLPVLGTA-AGG-- 299 (377)
Q Consensus 231 ~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~---~~~~~~Ea~a---~g~PvI~s~-~~~-- 299 (377)
....+....+..+. .+.......+....+. ..|++++-.. ..+ .|..+++.+. ...|+|.-. ...
T Consensus 12 ~~~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~~~~dlvild~~--l~~~~~~g~~~~~~i~~~~~~~pii~ls~~~~~~ 87 (227)
T TIGR03787 12 IRENYADALKRQGY--QVTTYADRPSAMQAFRQRLPDLAIIDIG--LGEEIDGGFMLCQDLRSLSATLPIIFLTARDSDF 87 (227)
T ss_pred HHHHHHHHHHHCCc--EEEEecCHHHHHHHHHhCCCCEEEEECC--CCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHH
Confidence 34445555554443 2333222223333332 3577766443 221 3555665554 357777543 222
Q ss_pred -cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 300 -TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 300 -~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
....+..|..+++..+.+ .+++.+.+..++.
T Consensus 88 ~~~~~~~~Ga~~~l~kp~~--~~~l~~~i~~~~~ 119 (227)
T TIGR03787 88 DTVSGLRLGADDYLTKDIS--LPHLLARITALFR 119 (227)
T ss_pred HHHHHHhcCCCEEEECCCC--HHHHHHHHHHHHH
Confidence 223344567789988887 8999988887764
No 488
>PLN02208 glycosyltransferase family protein
Probab=24.42 E-value=50 Score=31.00 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=17.6
Q ss_pred CcHhhHHHhcCceEEEEEec
Q 017085 1 MELAFLLRGVGTKVNWITIQ 20 (377)
Q Consensus 1 ~~la~~L~~~G~eV~v~~~~ 20 (377)
++||+.|..+|++||++++.
T Consensus 22 l~LAk~La~~G~~VT~vtt~ 41 (442)
T PLN02208 22 LHLANKLAEKGHRVTFLLPK 41 (442)
T ss_pred HHHHHHHHhCCCEEEEEecc
Confidence 37899999999999999944
No 489
>CHL00148 orf27 Ycf27; Reviewed
Probab=24.40 E-value=3.9e+02 Score=21.78 Aligned_cols=110 Identities=8% Similarity=0.040 Sum_probs=61.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH--cC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQ 289 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a--~g 289 (377)
+..+++++.+.. .....+.......+. .+.......+....+. ..|++++-... ....|..+++.+. ..
T Consensus 5 ~~~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~l~~~~~~~~d~illd~~~-~~~~g~~~~~~l~~~~~ 77 (240)
T CHL00148 5 SKEKILVVDDEA----YIRKILETRLSIIGY--EVITASDGEEALKLFRKEQPDLVILDVMM-PKLDGYGVCQEIRKESD 77 (240)
T ss_pred CCceEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 456777777753 345556666665543 3433333233333332 35777764331 3334555555553 35
Q ss_pred CcEEEeC-CCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGTA-AGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s~-~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|.-. .... .+.+..|..+++..+.+ .+++.+.+..++.
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~--~~~L~~~i~~~~~ 122 (240)
T CHL00148 78 VPIIMLTALGDVSDRITGLELGADDYVVKPFS--PKELEARIRSVLR 122 (240)
T ss_pred CcEEEEECCCCHHhHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 7776543 2222 23344567789998887 8999998887764
No 490
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=24.27 E-value=2.9e+02 Score=20.23 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=22.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
|...++.+|+.+.. ..|.+...+.++++|+.-.+..++
T Consensus 30 P~Laii~vg~d~~S-~~Y~~~k~k~~~~~Gi~~~~~~l~ 67 (117)
T PF00763_consen 30 PKLAIILVGDDPAS-ISYVRSKQKAAEKLGIEFELIELP 67 (117)
T ss_dssp -EEEEEEES--HHH-HHHHHHHHHHHHHHT-EEEEEEE-
T ss_pred cEEEEEecCCChhH-HHHHHHHHHHHHHcCCceEEEECC
Confidence 66666677775322 247777788888999875555554
No 491
>PRK08818 prephenate dehydrogenase; Provisional
Probab=24.22 E-value=4.9e+02 Score=23.81 Aligned_cols=15 Identities=40% Similarity=0.450 Sum_probs=7.3
Q ss_pred HHHHH-HcCCcEEEeC
Q 017085 282 TIEAM-AFQLPVLGTA 296 (377)
Q Consensus 282 ~~Ea~-a~g~PvI~s~ 296 (377)
++++| ..+.++|++.
T Consensus 94 i~~~~~~~~~~fVG~H 109 (370)
T PRK08818 94 PVAAMLASQAEVVGLH 109 (370)
T ss_pred HHHHHHhcCCCEEeeC
Confidence 44444 3345566653
No 492
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=24.10 E-value=5.7e+02 Score=23.54 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=52.6
Q ss_pred cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCE
Q 017085 189 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDV 266 (377)
Q Consensus 189 ~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv 266 (377)
.+|.+.+++++..... +. ..++-.+.++|.-.+. ...+++.+.+++|+..+..+ .. .++.++-+. +.+
T Consensus 134 ~~G~~~~~~alv~~~~---~~--~~~~~~VnliG~~~~~---d~~el~~lL~~~Gi~v~~~~-~d-~~~~~~~~~~~a~~ 203 (396)
T cd01979 134 TQGEDTVLAALVPRCP---EK--PSPERSLVLVGSLPDI---VEDQLRRELEQLGIPVVGFL-PP-RRYTDLPVIGPGTY 203 (396)
T ss_pred HHHHHHHHHHHhhhcc---cc--cCCCCceEEEEeCCcc---hHHHHHHHHHHcCCeEEEEe-CC-CChHHhhccCcceE
Confidence 4677877777764321 11 1133566899985432 36789999999999754344 32 234444432 222
Q ss_pred EEecCCCCCCccchHHHHHH--HcCCcEEEeCC
Q 017085 267 LVQNSQAWGECFGRITIEAM--AFQLPVLGTAA 297 (377)
Q Consensus 267 ~l~ps~~~~e~~~~~~~Ea~--a~g~PvI~s~~ 297 (377)
.+.-+. +.....+.| -+|+|.+....
T Consensus 204 ~~~~~~-----~~~~~A~~Le~r~giP~~~~~~ 231 (396)
T cd01979 204 VLGIQP-----FLSRTATTLMRRRKCKLLSAPF 231 (396)
T ss_pred EEEeCh-----hHHHHHHHHHHhcCCCcccCCc
Confidence 221111 233566666 47888876543
No 493
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.07 E-value=4.7e+02 Score=22.91 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=36.6
Q ss_pred cCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEEEecCC
Q 017085 212 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 212 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~l~ps~ 272 (377)
...+-+.+++|.+.- .-.-+..+....+- .|+..... .++.++.+.||+++...-
T Consensus 155 ~l~Gk~vvVIGrs~~----VG~pla~lL~~~ga--tVtv~~s~t~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 155 DLEGKNAVVIGRSHI----VGQPVSKLLLQKNA--SVTILHSRSKDMASYLKDADVIVSAVG 210 (286)
T ss_pred CCCCCEEEEECCCch----hHHHHHHHHHHCCC--eEEEEeCCchhHHHHHhhCCEEEECCC
Confidence 345778999999741 33444555554443 45555543 789999999999997653
No 494
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=23.74 E-value=80 Score=20.42 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.3
Q ss_pred HhhHHHhcCceEEEEEecC
Q 017085 3 LAFLLRGVGTKVNWITIQK 21 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~ 21 (377)
.|..|++.|++|+|+=...
T Consensus 11 aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 11 AAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHCCCcEEEEecCc
Confidence 5778999999999996443
No 495
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=23.69 E-value=6.7e+02 Score=24.19 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=50.4
Q ss_pred CeEEEEEecCCC--cccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHH--c
Q 017085 215 SVHAVIIGSDMN--AQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--F 288 (377)
Q Consensus 215 ~~~l~i~G~~~~--~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a--~ 288 (377)
.-.+.|+|.-.. ..+....+++++++.+|+.-|..|.+.. +++.. +..|++-+..+. . +|..+.|+|. +
T Consensus 163 ~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~-~~~A~~NIvl~~--~--~g~~~A~~Le~~f 237 (513)
T CHL00076 163 KPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKN-LPKAWFNIVPYR--E--VGLMTAKYLEKEF 237 (513)
T ss_pred CCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHh-cccCcEEEEech--h--hhHHHHHHHHHHh
Confidence 346788875421 1123568899999999999887887653 44433 556666665543 2 5677888885 5
Q ss_pred CCcEEEe
Q 017085 289 QLPVLGT 295 (377)
Q Consensus 289 g~PvI~s 295 (377)
|+|.+..
T Consensus 238 giP~i~~ 244 (513)
T CHL00076 238 GMPYIST 244 (513)
T ss_pred CCCeEee
Confidence 9998764
No 496
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=23.69 E-value=2e+02 Score=23.68 Aligned_cols=53 Identities=8% Similarity=0.006 Sum_probs=32.8
Q ss_pred CCcEEEecCc------CCHHHHHHhcCEEEecCCCCCCccc--hHHHHHHHcCCcEEEeCCC
Q 017085 245 QDRVHFVNKT------LTVAPYLAAIDVLVQNSQAWGECFG--RITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 245 ~~~v~~~g~~------~~~~~~~~~adv~l~ps~~~~e~~~--~~~~Ea~a~g~PvI~s~~~ 298 (377)
.++|.|.|.. ++..+.+..||++|.-..+ ....| .-+-++...|.|+|.-+..
T Consensus 131 rP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTS-l~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 131 KDTIVDFGERLPPENWMGAAAAACRADLFLCLGTS-LQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred CCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcC-ceehhHHHHHHHHHhcCCeEEEECCC
Confidence 4578888863 3455667789987753321 23333 2234677889999987643
No 497
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=23.50 E-value=2.2e+02 Score=23.41 Aligned_cols=45 Identities=20% Similarity=0.044 Sum_probs=28.7
Q ss_pred HhhHHHhcCceEEEEEecCCCcchh---------H----hhhhhhhhcccCceEEEcc
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDE---------V----IYSLEHKMWDRGVQVISAK 47 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~ 47 (377)
||.+..++|++|.+++...++.... . ...+.......|+++....
T Consensus 59 LAlAA~rrG~~vev~~~~~~plfld~vr~~~kk~v~~~v~~~f~~~a~~~gv~~~~~~ 116 (207)
T PF11814_consen 59 LALAAARRGFKVEVWVSTDGPLFLDSVRSEEKKEVMELVHEDFREEAEQAGVPVHYRP 116 (207)
T ss_pred HHHHHHHcCCceEEEECCCCCceeccCCCHHHHHHHHHHHHHHHHHHHHCCCceecCC
Confidence 7888899999999999765532111 1 1134455566788775543
No 498
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=23.44 E-value=6.2e+02 Score=23.74 Aligned_cols=89 Identities=7% Similarity=0.080 Sum_probs=50.8
Q ss_pred HHHHHHhCC---CCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHh
Q 017085 165 EHVRESLGV---RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 241 (377)
Q Consensus 165 ~~~r~~~~~---~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~ 241 (377)
-.+++.+|- .-+...|+++|-+...+=...++.+++.+ .++.+.+++...-. ..+++.+.+++
T Consensus 226 ~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~-----------~G~~v~l~~P~~~~---~~~~~~~~~~~ 291 (429)
T PRK11891 226 YTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALY-----------RGLKFTLVSPPTLE---MPAYIVEQISR 291 (429)
T ss_pred HHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHh-----------cCCEEEEECCCccc---cCHHHHHHHHh
Confidence 445666652 12457888999653233344444443321 46889999874321 12344444554
Q ss_pred cCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 242 KKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 242 ~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
.| ..+.+. +++.+.+..||++...+.
T Consensus 292 ~G--~~v~~~---~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 292 NG--HVIEQT---DDLAAGLRGADVVYATRI 317 (429)
T ss_pred cC--CeEEEE---cCHHHHhCCCCEEEEcCc
Confidence 43 234432 678899999999887553
No 499
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=23.38 E-value=70 Score=26.78 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=24.2
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCchhhh
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGK 70 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~ 70 (377)
.|.+|+++|++|+.+..+.......+. ..+...++..+++-|++..+..-.
T Consensus 54 fa~~L~~~G~~V~Y~~~~~~~~~~s~~-----------------~~L~~~~~~~~~~~~~~~~P~d~~ 104 (224)
T PF04244_consen 54 FADELRAKGFRVHYIELDDPENTQSFE-----------------DALARALKQHGIDRLHVMEPGDYR 104 (224)
T ss_dssp HHHHHHHTT--EEEE-TT-TT--SSHH-----------------HHHHHHHHHH----EEEE--S-HH
T ss_pred HHHHHHhCCCEEEEEeCCCccccccHH-----------------HHHHHHHHHcCCCEEEEECCCCHH
Confidence 478899999999999877543222222 123455566777778777665443
No 500
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=23.33 E-value=3.7e+02 Score=24.70 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=48.5
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--------CCHH
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--------LTVA 258 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--------~~~~ 258 (377)
+|..+....=+.|..+.+.. ..|+ -++|.. |..+++.+.+.+. +-+.+.|+- ..+.
T Consensus 267 NP~gDL~~T~~~~~~~~~~~-------~~w~-g~~g~~-----P~~~e~~~~l~~~---dlf~Y~GHG~G~qy~~~~~i~ 330 (383)
T PF03568_consen 267 NPSGDLKRTEKRFEPFFKSW-------KGWK-GIIGRA-----PTEEEFLQALTSS---DLFLYCGHGSGEQYISGSTIQ 330 (383)
T ss_pred CCCCCHHHHHHHHHHHHhcc-------cCCC-ceECCC-----CCHHHHHHHHHhC---CeEEEecCCcHHHhCCHhhhc
Confidence 56666666666666554421 2343 356665 2345555555443 456777742 2233
Q ss_pred HHHHhcCEEEecCCC-------CCCccchHHHHHHHcCCcEEEeC
Q 017085 259 PYLAAIDVLVQNSQA-------WGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 259 ~~~~~adv~l~ps~~-------~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.+-..+-.+++...+ ..|+.| +++-+|.+|+|.|+.+
T Consensus 331 ~~~~~~~~lL~GCsS~~l~~~g~~~~~g-~~~~yl~ag~p~vvg~ 374 (383)
T PF03568_consen 331 RLDCCAVSLLMGCSSGRLKEQGEFEPYG-TPLSYLLAGCPLVVGN 374 (383)
T ss_pred cccccCceEEecCCcccccccCCCCCCC-cHHHHHhcCChheEee
Confidence 322233334432211 234444 5678999999988764
Done!