Query 017085
Match_columns 377
No_of_seqs 240 out of 2324
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 08:41:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jjm_A Glycosyl transferase, g 100.0 5.6E-45 1.9E-49 333.2 29.2 332 2-373 35-390 (394)
2 3fro_A GLGA glycogen synthase; 100.0 5.3E-44 1.8E-48 331.2 27.7 346 2-374 26-436 (439)
3 2r60_A Glycosyl transferase, g 100.0 3.3E-44 1.1E-48 338.0 25.7 351 2-374 41-465 (499)
4 3c48_A Predicted glycosyltrans 100.0 1.6E-43 5.6E-48 327.9 29.2 341 2-374 50-431 (438)
5 2x6q_A Trehalose-synthase TRET 100.0 2.4E-43 8.1E-48 324.7 24.8 336 2-369 61-415 (416)
6 3okp_A GDP-mannose-dependent a 100.0 5.8E-43 2E-47 319.7 26.6 332 2-373 27-384 (394)
7 1rzu_A Glycogen synthase 1; gl 100.0 1.1E-42 3.8E-47 326.5 25.7 294 55-374 128-481 (485)
8 2qzs_A Glycogen synthase; glyc 100.0 8.2E-42 2.8E-46 320.6 29.0 293 56-375 128-483 (485)
9 3oy2_A Glycosyltransferase B73 100.0 4.8E-42 1.6E-46 315.7 26.0 336 2-373 22-395 (413)
10 2iw1_A Lipopolysaccharide core 100.0 2.1E-42 7.1E-47 313.8 16.4 327 2-369 22-372 (374)
11 3s28_A Sucrose synthase 1; gly 100.0 4.3E-41 1.5E-45 325.5 20.8 298 56-368 406-769 (816)
12 3vue_A GBSS-I, granule-bound s 100.0 3.9E-40 1.3E-44 309.3 21.1 241 108-369 240-512 (536)
13 2gek_A Phosphatidylinositol ma 100.0 6.4E-40 2.2E-44 300.8 21.4 329 2-373 43-388 (406)
14 2iuy_A Avigt4, glycosyltransfe 100.0 2.3E-39 8E-44 290.2 20.0 287 2-372 38-339 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 7.2E-36 2.4E-40 272.6 16.0 318 2-370 70-411 (413)
16 2vsy_A XCC0866; transferase, g 100.0 2.7E-33 9.3E-38 267.7 19.8 311 2-373 226-564 (568)
17 1f0k_A MURG, UDP-N-acetylgluco 100.0 2.9E-32 9.9E-37 246.2 25.4 299 2-368 25-357 (364)
18 1uqt_A Alpha, alpha-trehalose- 100.0 4.6E-31 1.6E-35 243.7 28.2 294 56-368 122-454 (482)
19 1vgv_A UDP-N-acetylglucosamine 100.0 2.6E-32 9E-37 248.3 19.5 290 49-372 78-380 (384)
20 3nb0_A Glycogen [starch] synth 100.0 8.2E-32 2.8E-36 249.6 22.2 306 56-373 180-638 (725)
21 2hy7_A Glucuronosyltransferase 100.0 9.2E-32 3.1E-36 245.6 15.9 238 57-369 124-380 (406)
22 2bfw_A GLGA glycogen synthase; 100.0 3.7E-31 1.3E-35 218.4 17.8 190 142-353 2-200 (200)
23 3beo_A UDP-N-acetylglucosamine 100.0 2.3E-31 7.8E-36 241.3 16.7 277 49-366 87-374 (375)
24 3t5t_A Putative glycosyltransf 100.0 1.8E-28 6.1E-33 223.7 24.0 287 57-370 149-475 (496)
25 3qhp_A Type 1 capsular polysac 100.0 3.7E-29 1.2E-33 200.0 16.5 161 177-360 2-166 (166)
26 2xci_A KDO-transferase, 3-deox 100.0 4.5E-29 1.5E-33 225.1 16.0 293 2-354 58-366 (374)
27 1v4v_A UDP-N-acetylglucosamine 100.0 4.2E-27 1.4E-31 213.3 19.2 272 49-370 83-366 (376)
28 2f9f_A First mannosyl transfer 99.9 1.4E-27 4.9E-32 192.6 10.8 145 171-336 17-165 (177)
29 3dzc_A UDP-N-acetylglucosamine 99.9 1.5E-22 5E-27 183.8 22.0 278 48-365 102-394 (396)
30 3rhz_A GTF3, nucleotide sugar 99.9 1.5E-22 5.1E-27 178.5 12.5 244 55-362 72-330 (339)
31 3otg_A CALG1; calicheamicin, T 99.9 2.4E-21 8.2E-26 177.6 21.0 165 175-367 241-409 (412)
32 3s2u_A UDP-N-acetylglucosamine 99.9 1.6E-20 5.4E-25 168.7 25.8 299 2-364 21-354 (365)
33 3ot5_A UDP-N-acetylglucosamine 99.9 1.9E-21 6.5E-26 176.6 19.1 276 48-371 105-394 (403)
34 4fzr_A SSFS6; structural genom 99.8 1.5E-19 5.2E-24 164.8 15.0 158 175-363 226-397 (398)
35 2iyf_A OLED, oleandomycin glyc 99.8 1.2E-18 4E-23 160.6 19.5 167 175-369 231-402 (430)
36 3tsa_A SPNG, NDP-rhamnosyltran 99.8 8.4E-19 2.9E-23 159.5 14.7 165 175-366 217-388 (391)
37 3ia7_A CALG4; glycosysltransfe 99.8 5.3E-18 1.8E-22 154.7 17.9 164 175-367 230-399 (402)
38 3oti_A CALG3; calicheamicin, T 99.8 1.6E-17 5.6E-22 151.3 17.2 159 175-365 231-396 (398)
39 4hwg_A UDP-N-acetylglucosamine 99.8 9.2E-18 3.1E-22 151.0 14.4 275 48-365 85-374 (385)
40 3rsc_A CALG2; TDP, enediyne, s 99.7 3.7E-17 1.3E-21 149.9 17.4 164 175-367 246-414 (415)
41 2p6p_A Glycosyl transferase; X 99.7 1.6E-15 5.6E-20 137.4 21.9 159 175-365 209-378 (384)
42 1l5w_A Maltodextrin phosphoryl 99.5 2.5E-13 8.6E-18 128.6 19.2 253 109-370 413-732 (796)
43 2c4m_A Glycogen phosphorylase; 99.5 1.4E-13 4.8E-18 130.3 16.8 256 109-370 402-721 (796)
44 3q3e_A HMW1C-like glycosyltran 99.5 2.4E-14 8.2E-19 132.8 10.6 273 48-371 340-626 (631)
45 3h4t_A Glycosyltransferase GTF 99.5 1.8E-12 6.3E-17 118.0 17.0 158 175-370 220-382 (404)
46 2iya_A OLEI, oleandomycin glyc 99.5 5.2E-12 1.8E-16 115.9 19.8 162 175-365 254-420 (424)
47 1iir_A Glycosyltransferase GTF 99.4 1.9E-11 6.5E-16 111.8 20.7 158 176-371 238-401 (415)
48 4amg_A Snogd; transferase, pol 99.4 8E-12 2.7E-16 113.7 16.9 158 175-364 236-398 (400)
49 2o6l_A UDP-glucuronosyltransfe 99.4 3.2E-12 1.1E-16 101.6 11.9 133 175-340 20-161 (170)
50 2gj4_A Glycogen phosphorylase, 99.4 2.3E-11 7.8E-16 115.8 17.1 252 109-370 437-756 (824)
51 2yjn_A ERYCIII, glycosyltransf 99.3 8.2E-12 2.8E-16 115.1 10.8 161 175-366 266-435 (441)
52 4gyw_A UDP-N-acetylglucosamine 99.2 9.2E-10 3.1E-14 106.9 20.8 185 167-371 513-708 (723)
53 1rrv_A Glycosyltransferase GTF 98.8 3.2E-08 1.1E-12 90.3 12.8 156 176-370 237-401 (416)
54 3hbm_A UDP-sugar hydrolase; PS 98.7 2.4E-06 8.1E-11 72.8 18.3 93 178-296 159-251 (282)
55 3l7i_A Teichoic acid biosynthe 98.6 1.2E-05 4.3E-10 78.5 22.7 254 39-335 399-685 (729)
56 1ygp_A Yeast glycogen phosphor 98.2 5.6E-05 1.9E-09 72.2 17.6 140 175-315 598-761 (879)
57 2c1x_A UDP-glucose flavonoid 3 98.0 1.1E-05 3.7E-10 74.2 8.6 95 245-347 324-425 (456)
58 3tov_A Glycosyl transferase fa 98.0 0.0013 4.3E-08 58.2 20.6 109 166-296 174-287 (349)
59 3hbf_A Flavonoid 3-O-glucosylt 98.0 8E-05 2.7E-09 68.1 12.7 149 175-346 272-426 (454)
60 2pq6_A UDP-glucuronosyl/UDP-gl 97.9 0.00032 1.1E-08 64.9 15.3 151 175-347 294-452 (482)
61 1psw_A ADP-heptose LPS heptosy 97.6 0.00027 9.1E-09 62.5 10.4 111 164-295 167-286 (348)
62 2acv_A Triterpene UDP-glucosyl 97.6 0.00088 3E-08 61.6 13.0 137 175-332 275-424 (463)
63 2vch_A Hydroquinone glucosyltr 97.5 0.0023 7.8E-08 59.1 14.7 81 248-333 341-429 (480)
64 2gt1_A Lipopolysaccharide hept 97.5 0.013 4.4E-07 51.0 18.5 101 172-295 174-278 (326)
65 2jzc_A UDP-N-acetylglucosamine 97.4 0.0001 3.6E-09 60.1 3.9 73 247-330 115-196 (224)
66 1k68_A Phytochrome response re 92.5 1.7 5.7E-05 31.5 10.6 110 216-332 3-130 (140)
67 3kht_A Response regulator; PSI 92.4 1.6 5.6E-05 31.9 10.4 112 214-332 4-127 (144)
68 1xv5_A AGT, DNA alpha-glucosyl 91.9 3.8 0.00013 32.2 22.0 311 5-357 26-391 (401)
69 3heb_A Response regulator rece 91.5 1.9 6.5E-05 32.0 10.0 110 215-331 4-133 (152)
70 3jte_A Response regulator rece 90.6 2.5 8.6E-05 30.8 9.8 112 215-335 3-125 (143)
71 3ilh_A Two component response 90.4 3.1 0.0001 30.3 10.2 115 214-335 8-141 (146)
72 2zay_A Response regulator rece 90.3 2.3 7.8E-05 31.2 9.4 110 214-332 7-127 (147)
73 1k66_A Phytochrome response re 90.2 3.1 0.00011 30.4 10.1 112 214-332 5-137 (149)
74 3cg4_A Response regulator rece 90.2 4 0.00014 29.5 10.8 110 214-332 6-126 (142)
75 3h1g_A Chemotaxis protein CHEY 89.6 4 0.00014 29.1 10.0 110 215-332 5-126 (129)
76 3grc_A Sensor protein, kinase; 89.6 4.5 0.00015 29.2 10.6 111 214-333 5-127 (140)
77 2pln_A HP1043, response regula 89.6 3.2 0.00011 30.0 9.5 107 214-333 17-133 (137)
78 3h5i_A Response regulator/sens 89.4 4.7 0.00016 29.2 11.7 109 215-332 5-123 (140)
79 1i3c_A Response regulator RCP1 89.1 4.5 0.00015 29.8 10.2 111 214-331 7-135 (149)
80 1qkk_A DCTD, C4-dicarboxylate 88.3 4.8 0.00016 29.8 9.9 112 215-335 3-123 (155)
81 3hzh_A Chemotaxis response reg 88.2 4.3 0.00015 30.2 9.6 108 216-332 37-156 (157)
82 4e7p_A Response regulator; DNA 88.1 5 0.00017 29.5 9.9 113 214-333 19-140 (150)
83 3eul_A Possible nitrate/nitrit 87.9 5 0.00017 29.5 9.8 114 214-334 14-136 (152)
84 2qvg_A Two component response 87.3 6.1 0.00021 28.6 9.9 110 215-331 7-133 (143)
85 3gt7_A Sensor protein; structu 87.1 6.7 0.00023 29.0 10.1 110 214-332 6-126 (154)
86 3lua_A Response regulator rece 86.7 3.7 0.00013 29.7 8.3 112 215-335 4-129 (140)
87 3n53_A Response regulator rece 86.2 7.6 0.00026 28.0 10.4 109 216-334 4-123 (140)
88 2qzj_A Two-component response 85.5 5.3 0.00018 28.8 8.6 109 215-332 4-120 (136)
89 2qsj_A DNA-binding response re 85.4 5.7 0.0002 29.2 8.9 111 215-333 3-124 (154)
90 2rjn_A Response regulator rece 85.4 8.2 0.00028 28.4 9.8 112 214-334 6-127 (154)
91 3hdg_A Uncharacterized protein 84.5 9.1 0.00031 27.4 9.9 112 214-334 6-126 (137)
92 3hdv_A Response regulator; PSI 84.3 9.2 0.00032 27.3 10.7 113 214-335 6-129 (136)
93 3kcn_A Adenylate cyclase homol 83.7 11 0.00037 27.6 10.5 112 215-336 4-126 (151)
94 1jbe_A Chemotaxis protein CHEY 83.6 9.4 0.00032 26.8 10.3 109 215-331 4-123 (128)
95 3gl9_A Response regulator; bet 83.4 9.5 0.00033 26.7 10.4 107 217-332 4-121 (122)
96 3t6k_A Response regulator rece 83.2 11 0.00036 27.1 10.6 111 215-334 4-125 (136)
97 3m6m_D Sensory/regulatory prot 83.2 11 0.00038 27.3 9.8 111 214-333 13-136 (143)
98 3hv2_A Response regulator/HD d 83.1 12 0.0004 27.5 9.9 111 215-334 14-134 (153)
99 1dbw_A Transcriptional regulat 83.1 9.9 0.00034 26.7 10.0 109 215-332 3-120 (126)
100 3eod_A Protein HNR; response r 83.1 10 0.00035 26.8 9.7 111 214-333 6-126 (130)
101 3cnb_A DNA-binding response re 82.7 11 0.00038 27.0 10.7 112 214-333 7-130 (143)
102 3to5_A CHEY homolog; alpha(5)b 82.5 12 0.00041 27.2 10.5 111 214-332 11-132 (134)
103 2j48_A Two-component sensor ki 82.3 7.2 0.00025 26.7 7.9 107 217-332 3-117 (119)
104 3i42_A Response regulator rece 82.0 11 0.00037 26.5 9.7 110 215-333 3-122 (127)
105 2rdm_A Response regulator rece 82.0 11 0.00038 26.5 10.6 109 214-333 4-123 (132)
106 2gkg_A Response regulator homo 81.8 10 0.00034 26.5 8.6 108 216-333 6-125 (127)
107 2qxy_A Response regulator; reg 81.4 11 0.00038 27.1 9.0 111 215-335 4-123 (142)
108 2r25_B Osmosensing histidine p 80.6 13 0.00045 26.5 10.4 109 216-332 3-126 (133)
109 2l2q_A PTS system, cellobiose- 80.5 11 0.00038 26.2 8.1 76 216-296 5-83 (109)
110 4dad_A Putative pilus assembly 80.3 5.5 0.00019 29.0 6.9 110 214-332 19-140 (146)
111 1mb3_A Cell division response 80.0 13 0.00043 25.9 9.4 107 217-332 3-120 (124)
112 4had_A Probable oxidoreductase 79.8 9.8 0.00034 32.9 9.3 95 175-296 21-117 (350)
113 2qr3_A Two-component system re 79.8 13 0.00044 26.6 8.8 111 215-334 3-127 (140)
114 2b4a_A BH3024; flavodoxin-like 79.6 14 0.00049 26.3 10.3 111 214-334 14-132 (138)
115 2gwr_A DNA-binding response re 79.5 22 0.00076 28.4 11.0 108 216-332 6-121 (238)
116 1p6q_A CHEY2; chemotaxis, sign 79.4 14 0.00047 26.0 9.2 110 215-332 6-126 (129)
117 1dcf_A ETR1 protein; beta-alph 79.3 7.3 0.00025 27.9 7.2 111 214-333 6-129 (136)
118 3f6c_A Positive transcription 78.6 15 0.00051 26.0 10.9 109 216-333 2-120 (134)
119 1ydw_A AX110P-like protein; st 78.3 22 0.00076 30.9 11.2 72 214-296 29-102 (362)
120 1s8n_A Putative antiterminator 78.1 22 0.00076 27.6 10.5 110 216-334 14-132 (205)
121 3mm4_A Histidine kinase homolo 77.0 21 0.00071 28.0 9.8 111 215-335 61-198 (206)
122 1fy2_A Aspartyl dipeptidase; s 76.7 13 0.00044 30.1 8.5 96 192-298 17-122 (229)
123 3e9m_A Oxidoreductase, GFO/IDH 76.1 25 0.00085 30.1 10.7 69 214-296 28-98 (330)
124 3cz5_A Two-component response 75.9 20 0.0007 26.1 9.6 111 214-333 4-125 (153)
125 1e2b_A Enzyme IIB-cellobiose; 75.8 12 0.00042 25.9 7.1 65 218-287 7-71 (106)
126 3cfy_A Putative LUXO repressor 75.7 19 0.00066 25.7 9.9 107 217-332 6-121 (137)
127 3r0j_A Possible two component 75.3 28 0.00097 28.1 10.5 109 215-332 23-140 (250)
128 4f3y_A DHPR, dihydrodipicolina 75.1 7.7 0.00026 32.3 6.8 45 255-301 65-109 (272)
129 1ys7_A Transcriptional regulat 74.8 30 0.001 27.4 11.6 109 215-332 7-124 (233)
130 3uuw_A Putative oxidoreductase 74.8 11 0.00036 32.0 7.9 68 214-296 30-97 (308)
131 3snk_A Response regulator CHEY 74.7 8.5 0.00029 27.5 6.4 110 214-332 13-132 (135)
132 3rqi_A Response regulator prot 74.6 11 0.00037 28.9 7.3 110 215-333 7-125 (184)
133 3b2n_A Uncharacterized protein 74.6 20 0.00068 25.4 9.8 111 216-333 4-123 (133)
134 1zgz_A Torcad operon transcrip 73.8 19 0.00066 24.8 10.2 106 217-331 4-117 (122)
135 1p9l_A Dihydrodipicolinate red 73.2 23 0.00078 28.9 9.1 78 217-302 2-82 (245)
136 3lte_A Response regulator; str 73.2 21 0.00073 25.0 9.9 111 215-334 6-126 (132)
137 3cg0_A Response regulator rece 73.1 22 0.00076 25.2 10.6 110 214-332 8-127 (140)
138 3f6p_A Transcriptional regulat 73.0 20 0.0007 24.8 9.7 107 217-332 4-118 (120)
139 3nhm_A Response regulator; pro 72.8 22 0.00075 25.0 11.1 109 215-333 4-122 (133)
140 2ayx_A Sensor kinase protein R 72.4 38 0.0013 27.5 11.0 110 214-332 128-246 (254)
141 2qv0_A Protein MRKE; structura 72.3 24 0.00082 25.2 10.4 112 214-333 8-127 (143)
142 2hqr_A Putative transcriptiona 72.2 16 0.00056 28.8 8.1 103 218-333 3-115 (223)
143 3cu5_A Two component transcrip 71.9 25 0.00085 25.2 10.2 109 217-332 4-122 (141)
144 1p2f_A Response regulator; DRR 71.9 13 0.00045 29.4 7.4 107 216-332 3-116 (220)
145 1srr_A SPO0F, sporulation resp 71.2 23 0.00078 24.5 9.7 108 216-332 4-120 (124)
146 3c3m_A Response regulator rece 70.7 26 0.00088 24.9 8.7 110 216-334 4-124 (138)
147 3crn_A Response regulator rece 70.6 25 0.00086 24.8 10.9 108 216-332 4-120 (132)
148 3en0_A Cyanophycinase; serine 70.0 29 0.00099 29.2 9.2 84 214-298 55-154 (291)
149 2jba_A Phosphate regulon trans 69.8 21 0.00073 24.8 7.6 107 217-332 4-121 (127)
150 2ixa_A Alpha-N-acetylgalactosa 69.7 38 0.0013 30.4 10.7 78 214-296 43-122 (444)
151 2lpm_A Two-component response 68.6 11 0.00039 26.9 5.6 109 214-331 7-120 (123)
152 3moi_A Probable dehydrogenase; 68.3 32 0.0011 30.2 9.7 68 214-296 26-95 (387)
153 1qo0_D AMIR; binding protein, 68.3 38 0.0013 25.9 12.0 108 214-334 11-126 (196)
154 2prs_A High-affinity zinc upta 67.8 13 0.00045 31.1 6.7 92 256-350 41-157 (284)
155 2pl1_A Transcriptional regulat 67.7 27 0.00091 23.9 10.8 106 217-331 2-116 (121)
156 3rc1_A Sugar 3-ketoreductase; 67.3 24 0.00084 30.5 8.6 93 176-296 26-120 (350)
157 4hkt_A Inositol 2-dehydrogenas 67.3 42 0.0014 28.6 10.1 67 214-296 26-94 (331)
158 3q9s_A DNA-binding response re 67.3 39 0.0013 27.3 9.5 108 216-332 38-153 (249)
159 1zh8_A Oxidoreductase; TM0312, 67.3 44 0.0015 28.7 10.2 95 175-296 16-113 (340)
160 3nbm_A PTS system, lactose-spe 67.1 29 0.00099 24.1 7.4 78 214-296 5-85 (108)
161 2nzw_A Alpha1,3-fucosyltransfe 67.0 14 0.00049 32.2 6.8 82 255-341 223-308 (371)
162 1kgs_A DRRD, DNA binding respo 66.8 44 0.0015 26.2 9.9 108 216-332 3-119 (225)
163 1mvo_A PHOP response regulator 66.3 31 0.0011 24.2 10.8 109 216-333 4-121 (136)
164 3kto_A Response regulator rece 66.0 12 0.0004 26.8 5.5 110 215-333 6-126 (136)
165 1h6d_A Precursor form of gluco 64.7 22 0.00074 31.9 7.9 98 175-296 81-181 (433)
166 1xhf_A DYE resistance, aerobic 64.5 32 0.0011 23.7 10.7 107 216-331 4-118 (123)
167 3cea_A MYO-inositol 2-dehydrog 64.4 49 0.0017 28.3 10.0 69 214-296 32-102 (346)
168 3ehd_A Uncharacterized conserv 63.8 20 0.00069 27.1 6.4 36 259-295 65-103 (162)
169 3mz0_A Inositol 2-dehydrogenas 63.7 66 0.0023 27.5 10.7 70 214-296 26-97 (344)
170 2a9o_A Response regulator; ess 63.7 32 0.0011 23.4 11.0 107 217-332 3-117 (120)
171 3u3x_A Oxidoreductase; structu 63.4 51 0.0017 28.6 10.0 92 177-296 26-119 (361)
172 1yio_A Response regulatory pro 63.0 50 0.0017 25.5 12.8 109 216-333 5-122 (208)
173 3db2_A Putative NADPH-dependen 62.3 51 0.0017 28.4 9.8 68 214-296 28-97 (354)
174 1rcu_A Conserved hypothetical 61.2 7.9 0.00027 30.4 3.8 37 258-298 113-151 (195)
175 1tmy_A CHEY protein, TMY; chem 61.2 36 0.0012 23.2 9.9 107 217-331 4-119 (120)
176 3a10_A Response regulator; pho 61.1 35 0.0012 23.1 10.8 106 217-331 3-115 (116)
177 3m2t_A Probable dehydrogenase; 61.0 20 0.00067 31.2 6.8 69 214-296 29-99 (359)
178 3ijp_A DHPR, dihydrodipicolina 60.5 17 0.00056 30.6 5.9 43 255-299 80-122 (288)
179 3euw_A MYO-inositol dehydrogen 60.1 56 0.0019 28.0 9.6 68 214-296 27-96 (344)
180 3evn_A Oxidoreductase, GFO/IDH 60.1 20 0.00068 30.7 6.6 69 214-296 28-98 (329)
181 3v5n_A Oxidoreductase; structu 59.7 94 0.0032 27.5 11.3 71 214-296 63-141 (417)
182 4fb5_A Probable oxidoreductase 59.5 26 0.0009 30.6 7.5 100 176-296 24-125 (393)
183 2yjn_A ERYCIII, glycosyltransf 59.4 7 0.00024 35.1 3.7 20 2-21 39-58 (441)
184 2oqr_A Sensory transduction pr 58.9 48 0.0016 26.1 8.5 109 216-333 5-121 (230)
185 4gqa_A NAD binding oxidoreduct 58.8 80 0.0027 27.8 10.6 102 175-296 24-127 (412)
186 1a04_A Nitrate/nitrite respons 58.4 62 0.0021 25.1 9.5 111 214-332 4-124 (215)
187 2ho3_A Oxidoreductase, GFO/IDH 58.4 52 0.0018 27.9 9.0 69 214-296 24-93 (325)
188 1xvl_A Mn transporter, MNTC pr 58.2 30 0.001 29.6 7.3 88 258-350 89-185 (321)
189 3c97_A Signal transduction his 57.5 48 0.0016 23.5 11.6 109 216-333 11-130 (140)
190 3ohs_X Trans-1,2-dihydrobenzen 56.8 45 0.0015 28.4 8.4 68 215-296 28-97 (334)
191 3ujp_A Mn transporter subunit; 56.6 29 0.001 29.4 6.9 88 258-350 75-171 (307)
192 1vs1_A 3-deoxy-7-phosphoheptul 56.6 85 0.0029 26.1 9.7 64 230-297 89-153 (276)
193 2o1e_A YCDH; alpha-beta protei 56.4 45 0.0015 28.3 8.1 89 258-350 65-173 (312)
194 1qv9_A F420-dependent methylen 56.4 27 0.00093 28.1 6.0 86 212-317 29-122 (283)
195 3ec7_A Putative dehydrogenase; 56.0 78 0.0027 27.3 9.8 70 214-296 47-118 (357)
196 3ezy_A Dehydrogenase; structur 55.9 61 0.0021 27.8 9.1 69 214-296 25-95 (344)
197 1dz3_A Stage 0 sporulation pro 55.8 48 0.0017 23.0 8.8 108 216-332 3-122 (130)
198 1toa_A Tromp-1, protein (perip 55.7 76 0.0026 26.9 9.4 99 259-365 83-190 (313)
199 1dc7_A NTRC, nitrogen regulati 55.3 17 0.00057 25.1 4.6 106 217-331 5-119 (124)
200 1rrv_A Glycosyltransferase GTF 54.9 7.6 0.00026 34.5 3.2 20 2-21 19-38 (416)
201 1tlt_A Putative oxidoreductase 54.6 64 0.0022 27.2 8.9 68 214-296 29-96 (319)
202 2f62_A Nucleoside 2-deoxyribos 53.9 68 0.0023 24.1 7.8 38 258-296 62-105 (161)
203 3vk5_A MOEO5; TIM barrel, tran 53.6 16 0.00054 30.5 4.5 77 185-272 44-125 (286)
204 3l4e_A Uncharacterized peptida 52.1 18 0.0006 28.7 4.5 78 215-297 27-121 (206)
205 1xea_A Oxidoreductase, GFO/IDH 51.6 50 0.0017 28.0 7.8 69 214-296 26-94 (323)
206 3oqb_A Oxidoreductase; structu 51.0 39 0.0013 29.5 7.1 56 233-296 57-114 (383)
207 2glx_A 1,5-anhydro-D-fructose 50.4 88 0.003 26.5 9.2 69 214-296 23-93 (332)
208 1ny5_A Transcriptional regulat 49.1 1.2E+02 0.0042 26.4 10.1 109 218-335 3-120 (387)
209 1zco_A 2-dehydro-3-deoxyphosph 48.9 1.1E+02 0.0038 25.1 10.8 103 181-297 26-138 (262)
210 3gi1_A LBP, laminin-binding pr 48.1 30 0.001 28.9 5.6 88 258-350 55-162 (286)
211 3luf_A Two-component system re 47.8 1.1E+02 0.0038 24.8 13.1 110 214-332 123-244 (259)
212 3klj_A NAD(FAD)-dependent dehy 47.7 16 0.00056 32.1 4.1 65 2-66 160-228 (385)
213 3dty_A Oxidoreductase, GFO/IDH 47.5 1.2E+02 0.0039 26.7 9.7 71 214-296 38-116 (398)
214 1zq6_A Otcase, ornithine carba 47.2 1.4E+02 0.0048 25.8 9.8 90 165-271 177-273 (359)
215 1w25_A Stalked-cell differenti 46.6 1.6E+02 0.0054 26.2 11.9 109 217-334 3-122 (459)
216 3q2i_A Dehydrogenase; rossmann 46.4 1.1E+02 0.0039 26.1 9.3 68 214-296 37-106 (354)
217 4h3v_A Oxidoreductase domain p 46.2 60 0.002 28.2 7.6 68 215-296 37-106 (390)
218 3mfq_A TROA, high-affinity zin 45.9 81 0.0028 26.2 7.9 86 258-350 50-144 (282)
219 1jzt_A Hypothetical 27.5 kDa p 45.9 23 0.00079 28.9 4.4 18 3-20 77-94 (246)
220 1tvm_A PTS system, galactitol- 45.3 19 0.00064 25.3 3.3 56 216-272 22-78 (113)
221 1vl6_A Malate oxidoreductase; 45.3 1.6E+02 0.0054 25.9 10.8 73 212-293 189-290 (388)
222 4fyk_A Deoxyribonucleoside 5'- 45.0 44 0.0015 24.9 5.4 70 258-332 63-141 (152)
223 3klo_A Transcriptional regulat 44.9 45 0.0015 26.3 6.1 110 214-332 6-128 (225)
224 2a9f_A Putative malic enzyme ( 44.8 1.6E+02 0.0056 25.9 9.9 98 187-295 162-287 (398)
225 2iz6_A Molybdenum cofactor car 44.5 9.3 0.00032 29.5 1.7 67 259-332 103-173 (176)
226 1f06_A MESO-diaminopimelate D- 44.3 48 0.0016 28.2 6.4 42 256-299 51-92 (320)
227 3dfz_A SIRC, precorrin-2 dehyd 44.3 1.2E+02 0.0041 24.2 12.8 125 215-353 54-188 (223)
228 3n0r_A Response regulator; sig 44.2 1.4E+02 0.0046 24.8 13.3 107 214-332 159-276 (286)
229 3eag_A UDP-N-acetylmuramate:L- 43.9 69 0.0024 27.3 7.4 70 3-80 20-91 (326)
230 1o0s_A NAD-ME, NAD-dependent m 43.5 2.1E+02 0.0071 26.7 11.9 105 187-295 294-431 (605)
231 1zh2_A KDP operon transcriptio 43.1 74 0.0025 21.4 9.1 106 217-331 3-116 (121)
232 1vr6_A Phospho-2-dehydro-3-deo 42.6 1.7E+02 0.0057 25.3 11.0 105 180-298 108-222 (350)
233 3cx3_A Lipoprotein; zinc-bindi 42.2 61 0.0021 27.0 6.6 88 259-350 54-160 (284)
234 3fwz_A Inner membrane protein 42.1 70 0.0024 23.0 6.3 57 2-67 21-81 (140)
235 2p2s_A Putative oxidoreductase 42.0 1.2E+02 0.004 25.8 8.6 69 214-296 27-97 (336)
236 2ixd_A LMBE-related protein; h 41.5 51 0.0017 26.8 5.8 60 6-65 26-105 (242)
237 3nvt_A 3-deoxy-D-arabino-heptu 40.6 1.7E+02 0.0058 25.6 9.3 104 181-298 145-258 (385)
238 1gq2_A Malic enzyme; oxidoredu 40.5 2.2E+02 0.0076 26.2 12.4 105 187-295 256-393 (555)
239 2ki0_A DS119; beta-alpha-beta, 40.4 5.7 0.00019 20.1 -0.1 32 215-252 4-35 (36)
240 3eqz_A Response regulator; str 40.0 68 0.0023 22.2 5.9 111 215-334 3-126 (135)
241 3on1_A BH2414 protein; structu 39.9 41 0.0014 22.9 4.3 77 190-284 21-97 (101)
242 2yv1_A Succinyl-COA ligase [AD 39.6 1E+02 0.0035 25.8 7.6 34 256-291 61-96 (294)
243 2pq6_A UDP-glucuronosyl/UDP-gl 39.4 13 0.00043 34.0 2.1 19 2-20 27-45 (482)
244 3kyj_B CHEY6 protein, putative 39.3 1E+02 0.0034 21.8 7.0 60 264-326 61-128 (145)
245 3kb6_A D-lactate dehydrogenase 39.1 1.7E+02 0.0057 25.1 9.0 76 215-299 141-233 (334)
246 3c3w_A Two component transcrip 38.7 31 0.0011 27.3 4.2 110 216-332 2-120 (225)
247 2jvf_A De novo protein M7; tet 38.2 65 0.0022 20.0 4.4 63 185-252 24-87 (96)
248 1pq4_A Periplasmic binding pro 38.0 1.7E+02 0.0057 24.4 8.7 31 320-350 141-173 (291)
249 2xzm_B RPS0E; ribosome, transl 37.9 1.6E+02 0.0055 23.8 8.2 102 189-304 47-153 (241)
250 2czc_A Glyceraldehyde-3-phosph 37.7 62 0.0021 27.7 6.1 40 255-296 71-110 (334)
251 3e18_A Oxidoreductase; dehydro 37.6 2E+02 0.0067 24.7 9.7 67 214-296 28-96 (359)
252 3btv_A Galactose/lactose metab 37.6 2.1E+02 0.0071 25.5 9.8 71 214-296 48-126 (438)
253 4fe3_A Cytosolic 5'-nucleotida 37.4 1.6E+02 0.0055 24.3 8.7 61 215-285 230-295 (297)
254 2gk4_A Conserved hypothetical 37.3 94 0.0032 25.0 6.6 53 2-64 34-91 (232)
255 2wqk_A 5'-nucleotidase SURE; S 37.2 13 0.00043 30.6 1.5 20 2-22 19-38 (251)
256 2nu8_A Succinyl-COA ligase [AD 37.1 1.7E+02 0.0057 24.4 8.5 35 256-292 55-91 (288)
257 3hh8_A Metal ABC transporter s 37.1 1.3E+02 0.0045 25.1 7.9 87 258-349 61-163 (294)
258 3llv_A Exopolyphosphatase-rela 36.9 91 0.0031 22.2 6.2 57 2-67 20-80 (141)
259 3hly_A Flavodoxin-like domain; 36.1 1.3E+02 0.0045 22.2 7.9 38 261-298 49-91 (161)
260 1vi6_A 30S ribosomal protein S 36.1 1.6E+02 0.0054 23.2 7.6 82 216-304 69-154 (208)
261 3tqq_A Methionyl-tRNA formyltr 35.4 52 0.0018 28.0 5.1 62 4-65 18-88 (314)
262 1uan_A Hypothetical protein TT 34.7 65 0.0022 25.8 5.4 17 49-65 87-103 (227)
263 3i6i_A Putative leucoanthocyan 34.6 78 0.0027 26.9 6.3 64 2-67 25-93 (346)
264 1yco_A Branched-chain phosphot 34.5 2E+02 0.0068 23.9 8.6 124 139-289 114-237 (279)
265 1l5x_A SurviVal protein E; str 34.5 41 0.0014 28.1 4.2 20 2-22 18-37 (280)
266 4ekn_B Aspartate carbamoyltran 34.2 1.7E+02 0.0058 24.7 8.0 87 165-271 140-226 (306)
267 3bch_A 40S ribosomal protein S 33.6 1.9E+02 0.0067 23.5 8.1 104 187-304 83-190 (253)
268 2w37_A Ornithine carbamoyltran 33.5 2.4E+02 0.0081 24.5 10.2 89 164-271 164-253 (359)
269 3egc_A Putative ribose operon 33.5 1.9E+02 0.0066 23.4 14.7 202 11-254 8-222 (291)
270 3qy9_A DHPR, dihydrodipicolina 33.3 44 0.0015 27.2 4.2 40 255-299 47-86 (243)
271 3gd5_A Otcase, ornithine carba 33.1 2.3E+02 0.0078 24.1 11.4 88 164-271 145-233 (323)
272 2nvw_A Galactose/lactose metab 32.8 2.1E+02 0.0072 25.9 9.0 71 214-296 67-145 (479)
273 3dzd_A Transcriptional regulat 32.4 2.2E+02 0.0075 24.6 8.8 97 231-332 12-117 (368)
274 2khz_A C-MYC-responsive protei 32.2 60 0.002 24.5 4.5 34 259-295 73-109 (165)
275 3u7q_A Nitrogenase molybdenum- 32.0 1.4E+02 0.0047 27.2 7.7 101 189-296 192-298 (492)
276 2yv2_A Succinyl-COA synthetase 31.6 2.3E+02 0.0078 23.7 8.9 35 255-291 60-97 (297)
277 1f8y_A Nucleoside 2-deoxyribos 31.4 48 0.0016 24.8 3.8 37 259-296 74-113 (157)
278 1oi7_A Succinyl-COA synthetase 31.2 1.6E+02 0.0055 24.5 7.5 13 322-334 186-198 (288)
279 3v7q_A Probable ribosomal prot 31.1 53 0.0018 22.3 3.7 59 190-264 22-80 (101)
280 3glr_A NAD-dependent deacetyla 31.1 60 0.0021 27.1 4.7 97 246-346 175-278 (285)
281 3rfo_A Methionyl-tRNA formyltr 31.0 75 0.0026 27.0 5.4 62 4-65 20-90 (317)
282 2m1z_A LMO0427 protein; homolo 30.9 1E+02 0.0035 21.3 5.0 60 232-297 22-85 (106)
283 1dxh_A Ornithine carbamoyltran 30.7 2.5E+02 0.0087 24.0 8.9 90 164-271 142-232 (335)
284 3c1a_A Putative oxidoreductase 30.6 73 0.0025 26.8 5.3 40 255-296 59-100 (315)
285 3q0i_A Methionyl-tRNA formyltr 30.6 77 0.0026 27.0 5.4 62 4-65 23-93 (318)
286 3g8r_A Probable spore coat pol 30.5 1.7E+02 0.0059 25.2 7.5 61 231-296 79-142 (350)
287 3t8y_A CHEB, chemotaxis respon 30.1 1.6E+02 0.0055 21.4 10.2 114 214-332 24-154 (164)
288 1i1q_B Anthranilate synthase c 30.0 1.3E+02 0.0046 22.9 6.5 63 231-295 12-82 (192)
289 2vch_A Hydroquinone glucosyltr 29.7 20 0.00068 32.7 1.7 20 2-21 25-45 (480)
290 4ew6_A D-galactose-1-dehydroge 29.7 1.6E+02 0.0055 24.9 7.4 40 255-296 70-112 (330)
291 3c85_A Putative glutathione-re 29.4 1.7E+02 0.006 21.8 7.0 57 2-67 53-115 (183)
292 3csu_A Protein (aspartate carb 29.4 2.4E+02 0.0081 23.8 8.1 87 165-271 143-229 (310)
293 2nx2_A Hypothetical protein YP 29.3 1.9E+02 0.0065 22.1 9.7 109 188-306 51-178 (181)
294 3i23_A Oxidoreductase, GFO/IDH 29.2 90 0.0031 26.7 5.8 69 214-296 26-96 (349)
295 3oao_A Uncharacterized protein 29.1 92 0.0031 23.0 4.9 33 336-368 47-79 (147)
296 2i6u_A Otcase, ornithine carba 28.6 2.6E+02 0.0091 23.5 10.4 89 164-271 136-225 (307)
297 3vzx_A Heptaprenylglyceryl pho 28.6 46 0.0016 26.8 3.4 55 214-272 30-84 (228)
298 1vlv_A Otcase, ornithine carba 28.0 2.8E+02 0.0096 23.6 9.0 89 164-271 155-244 (325)
299 3czc_A RMPB; alpha/beta sandwi 27.9 41 0.0014 23.3 2.7 54 218-272 22-76 (110)
300 4b4t_W RPN10, 26S proteasome r 27.8 2.3E+02 0.0078 23.4 7.6 55 176-242 107-161 (268)
301 1e5d_A Rubredoxin\:oxygen oxid 27.7 3E+02 0.01 23.8 11.2 110 177-295 220-342 (402)
302 1pvv_A Otcase, ornithine carba 27.3 2.8E+02 0.0097 23.4 9.4 88 164-271 143-231 (315)
303 2cok_A Poly [ADP-ribose] polym 27.1 52 0.0018 23.1 3.1 67 214-296 12-78 (113)
304 2dc1_A L-aspartate dehydrogena 27.1 1.6E+02 0.0056 23.3 6.7 41 255-297 41-82 (236)
305 3l9w_A Glutathione-regulated p 27.0 1.4E+02 0.0049 26.4 6.7 57 2-67 18-78 (413)
306 3v7e_A Ribosome-associated pro 27.0 1.3E+02 0.0044 19.4 5.5 56 190-261 14-69 (82)
307 3nv9_A Malic enzyme; rossmann 26.7 3.6E+02 0.012 24.4 10.1 101 187-295 193-325 (487)
308 1r5j_A Putative phosphotransac 25.9 17 0.00058 31.4 0.5 95 165-287 197-293 (337)
309 4hyl_A Stage II sporulation pr 25.9 1.1E+02 0.0038 20.9 4.9 59 178-253 44-104 (117)
310 4ep1_A Otcase, ornithine carba 25.8 3.2E+02 0.011 23.5 11.4 87 164-271 167-255 (340)
311 1fmt_A Methionyl-tRNA FMet for 25.5 99 0.0034 26.2 5.2 62 4-65 19-89 (314)
312 4hcj_A THIJ/PFPI domain protei 25.4 1E+02 0.0034 23.5 4.8 52 4-67 28-79 (177)
313 1ml4_A Aspartate transcarbamoy 25.4 3.1E+02 0.01 23.1 8.2 88 164-272 143-230 (308)
314 1a4i_A Methylenetetrahydrofola 25.3 3E+02 0.01 23.1 8.4 55 212-272 162-217 (301)
315 3w01_A Heptaprenylglyceryl pho 25.1 1.1E+02 0.0037 24.7 5.0 56 214-273 35-90 (235)
316 2z1d_A Hydrogenase expression/ 25.1 83 0.0028 27.2 4.5 83 213-297 137-228 (372)
317 3p2y_A Alanine dehydrogenase/p 25.1 3.5E+02 0.012 23.7 9.2 47 256-302 258-310 (381)
318 1kjn_A MTH0777; hypotethical p 24.9 47 0.0016 24.5 2.6 19 2-20 27-45 (157)
319 3geb_A EYES absent homolog 2; 24.8 1.4E+02 0.0047 24.4 5.4 53 197-265 218-270 (274)
320 3lzd_A DPH2; diphthamide biosy 24.8 89 0.003 27.3 4.7 74 215-295 265-341 (378)
321 3ip3_A Oxidoreductase, putativ 24.7 2.5E+02 0.0084 23.7 7.7 74 214-296 23-98 (337)
322 1duv_G Octase-1, ornithine tra 24.5 3.3E+02 0.011 23.2 10.3 90 164-271 141-232 (333)
323 1vq8_F 50S ribosomal protein L 24.3 1.5E+02 0.0051 20.8 5.2 58 190-263 32-90 (120)
324 1u7z_A Coenzyme A biosynthesis 24.3 2.2E+02 0.0075 22.7 6.7 19 2-20 39-57 (226)
325 2zkq_b 40S ribosomal protein S 24.3 3.1E+02 0.011 22.9 8.4 103 188-304 51-157 (295)
326 3av3_A Phosphoribosylglycinami 24.2 1.7E+02 0.0058 23.0 6.0 57 3-65 20-90 (212)
327 3eq2_A Probable two-component 24.2 3.4E+02 0.012 23.3 13.8 112 215-335 5-126 (394)
328 3hn7_A UDP-N-acetylmuramate-L- 24.2 1.9E+02 0.0067 26.4 7.3 54 3-65 35-88 (524)
329 2ohw_A YUEI protein; structura 24.1 2E+02 0.007 20.7 5.9 67 165-245 24-91 (133)
330 4b4k_A N5-carboxyaminoimidazol 24.1 2.4E+02 0.0083 21.5 6.6 11 214-224 50-60 (181)
331 2bw0_A 10-FTHFDH, 10-formyltet 24.1 1.1E+02 0.0037 26.2 5.2 60 4-65 38-107 (329)
332 1xmp_A PURE, phosphoribosylami 24.0 2.4E+02 0.0081 21.4 10.7 63 230-295 25-95 (170)
333 3iz5_f 60S ribosomal protein L 23.8 1.9E+02 0.0064 20.1 5.9 58 190-263 29-87 (112)
334 3aek_B Light-independent proto 23.8 4E+02 0.014 24.4 9.3 76 215-295 153-234 (525)
335 1cf2_P Protein (glyceraldehyde 23.6 1.3E+02 0.0046 25.7 5.7 40 256-297 71-110 (337)
336 3o74_A Fructose transport syst 23.5 2.8E+02 0.0095 22.0 16.2 35 215-254 180-215 (272)
337 1ydg_A Trp repressor binding p 23.3 1.6E+02 0.0054 22.8 5.8 27 256-282 71-97 (211)
338 1s2d_A Purine trans deoxyribos 23.2 75 0.0026 24.1 3.6 38 259-296 77-116 (167)
339 2bln_A Protein YFBG; transfera 23.1 90 0.0031 26.3 4.4 62 4-65 16-83 (305)
340 4b4o_A Epimerase family protei 22.8 44 0.0015 27.8 2.5 20 2-21 15-34 (298)
341 1t35_A Hypothetical protein YV 22.8 1.1E+02 0.0037 23.7 4.5 41 255-299 89-137 (191)
342 2ale_A SNU13, NHP2/L7AE family 22.7 2E+02 0.0068 20.7 5.6 54 190-258 35-88 (134)
343 1oth_A Protein (ornithine tran 22.6 3.5E+02 0.012 23.0 7.9 84 166-269 145-229 (321)
344 3iz6_A 40S ribosomal protein S 22.3 3.5E+02 0.012 22.7 8.7 103 188-304 55-161 (305)
345 1sbo_A Putative anti-sigma fac 22.3 1.3E+02 0.0043 20.1 4.5 53 178-247 46-100 (110)
346 2yvq_A Carbamoyl-phosphate syn 22.2 1.8E+02 0.006 21.2 5.4 18 48-65 87-104 (143)
347 1weh_A Conserved hypothetical 22.1 62 0.0021 24.6 3.0 41 258-304 92-141 (171)
348 4hv4_A UDP-N-acetylmuramate--L 22.1 1.4E+02 0.0049 27.1 5.9 53 3-66 38-90 (494)
349 4evq_A Putative ABC transporte 22.1 2.8E+02 0.0095 23.4 7.7 62 3-64 142-213 (375)
350 2wqp_A Polysialic acid capsule 22.0 2.1E+02 0.0073 24.6 6.5 62 230-296 91-155 (349)
351 1th8_B Anti-sigma F factor ant 21.9 85 0.0029 21.4 3.5 47 189-252 58-104 (116)
352 3sqd_A PAX-interacting protein 21.7 51 0.0017 26.3 2.5 63 215-296 16-78 (219)
353 2ohh_A Type A flavoprotein FPR 21.6 3.4E+02 0.012 23.4 8.2 77 217-295 259-349 (404)
354 4a8t_A Putrescine carbamoyltra 21.6 1.7E+02 0.0057 25.2 5.8 59 2-63 190-248 (339)
355 2ka5_A Putative anti-sigma fac 21.6 90 0.0031 21.9 3.6 58 178-252 54-113 (125)
356 4a8p_A Putrescine carbamoyltra 21.6 1.6E+02 0.0056 25.4 5.7 59 2-63 168-226 (355)
357 3ors_A N5-carboxyaminoimidazol 21.4 2.6E+02 0.009 21.0 6.7 63 230-295 17-87 (163)
358 3h75_A Periplasmic sugar-bindi 21.3 1.1E+02 0.0038 25.9 4.9 85 212-298 2-95 (350)
359 1b0a_A Protein (fold bifunctio 21.2 3.6E+02 0.012 22.5 8.5 55 212-272 156-211 (288)
360 3qjg_A Epidermin biosynthesis 21.2 53 0.0018 25.1 2.4 21 2-22 23-43 (175)
361 3p2o_A Bifunctional protein fo 21.1 3.6E+02 0.012 22.4 8.1 55 212-272 157-212 (285)
362 2acv_A Triterpene UDP-glucosyl 21.0 41 0.0014 30.4 2.0 21 1-21 27-49 (463)
363 3lk7_A UDP-N-acetylmuramoylala 20.9 1.5E+02 0.005 26.6 5.7 58 2-66 23-81 (451)
364 2fqx_A Membrane lipoprotein TM 20.6 2.2E+02 0.0076 23.8 6.6 66 3-69 119-200 (318)
365 3u5c_A 40S ribosomal protein S 20.3 1.1E+02 0.0037 25.0 4.1 72 217-295 72-146 (252)
366 3nva_A CTP synthase; rossman f 20.3 5.1E+02 0.017 23.8 16.4 218 55-295 133-385 (535)
367 2i6u_A Otcase, ornithine carba 20.2 1.8E+02 0.0061 24.6 5.6 61 2-64 164-224 (307)
368 2g1u_A Hypothetical protein TM 20.2 2.5E+02 0.0086 20.3 7.8 57 2-67 33-94 (155)
369 4a8t_A Putrescine carbamoyltra 20.1 4.1E+02 0.014 22.7 8.3 86 164-269 160-248 (339)
370 1vli_A Spore coat polysacchari 20.1 2E+02 0.0068 25.2 6.0 60 230-296 101-165 (385)
371 4eyg_A Twin-arginine transloca 20.1 3E+02 0.01 23.1 7.5 61 3-64 130-201 (368)
No 1
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=5.6e-45 Score=333.15 Aligned_cols=332 Identities=20% Similarity=0.250 Sum_probs=259.1
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEE------------------ccchhHHHhhhcccEEEE
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS------------------AKGQETINTALKADLIVL 63 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~Div~~ 63 (377)
+|+++|.++||+|++++...+..... ...++.+.. ...+..++++.+||+||+
T Consensus 35 ~la~~L~~~G~~V~v~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dvv~~ 105 (394)
T 2jjm_A 35 ELGKQLAERGHEIHFITSGLPFRLNK---------VYPNIYFHEVTVNQYSVFQYPPYDLALASKMAEVAQRENLDILHV 105 (394)
T ss_dssp HHHHHHHHTTCEEEEECSSCC----C---------CCTTEEEECCCCC----CCSCCHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHhCCCEEEEEeCCCCCcccc---------cCCceEEEecccccccccccccccHHHHHHHHHHHHHcCCCEEEE
Confidence 68999999999999999754321100 011111110 012344556789999999
Q ss_pred cCchhhhHHHHHhhcCCCccccceeEEeeeeccc------ccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCC
Q 017085 64 NTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 137 (377)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 137 (377)
|+..+..+...+...... ...|++++.|+.... .+.......++.+|.+++.|....+.+.+ .++. ..
T Consensus 106 ~~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~----~~~~-~~ 179 (394)
T 2jjm_A 106 HYAIPHAICAYLAKQMIG-ERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLINETHE----LVKP-NK 179 (394)
T ss_dssp CSSTTHHHHHHHHHHHTT-TCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHHHHHHHH----HTCC-SS
T ss_pred cchhHHHHHHHHHHHhhc-CCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHHHHHHHH----hhCC-cc
Confidence 976544333222221111 125899999985321 12223344557899999999999888765 3333 57
Q ss_pred CeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeE
Q 017085 138 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 217 (377)
Q Consensus 138 ~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~ 217 (377)
++.++|||+|.+.+.+.. +..++++++++++.++++++|++.+.||++.+++++..+.+ + ++++
T Consensus 180 ~~~vi~ngv~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~-------~-~~~~ 243 (394)
T 2jjm_A 180 DIQTVYNFIDERVYFKRD--------MTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVT-------E-VDAK 243 (394)
T ss_dssp CEEECCCCCCTTTCCCCC--------CHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHH-------S-SCCE
T ss_pred cEEEecCCccHHhcCCcc--------hHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHh-------h-CCCE
Confidence 899999999988765432 34578889998888999999999999999999999997754 2 5689
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
|+|+|+| +..+++++.++++++.++|.|+|+.+++.++|+.||++++||. .|++|++++|||++|+|||+++.
T Consensus 244 l~i~G~g-----~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~--~e~~~~~~~EAma~G~PvI~~~~ 316 (394)
T 2jjm_A 244 LLLVGDG-----PEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSE--KESFGLVLLEAMACGVPCIGTRV 316 (394)
T ss_dssp EEEECCC-----TTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCS--CCSCCHHHHHHHHTTCCEEEECC
T ss_pred EEEECCc-----hHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccc--cCCCchHHHHHHhcCCCEEEecC
Confidence 9999998 4678899999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 017085 298 GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 373 (377)
Q Consensus 298 ~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 373 (377)
++..|++.++.+|++++++| +++++++|.++++|++.+.++++++++.+.++|+|+.+++++.++|++++++.+
T Consensus 317 ~~~~e~v~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 390 (394)
T 2jjm_A 317 GGIPEVIQHGDTGYLCEVGD--TTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYYDVLRDDK 390 (394)
T ss_dssp TTSTTTCCBTTTEEEECTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC----
T ss_pred CChHHHhhcCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999988 999999999999999999999999999998999999999999999999987654
No 2
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=5.3e-44 Score=331.19 Aligned_cols=346 Identities=16% Similarity=0.093 Sum_probs=266.9
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhh----------hhhhcccCceEEEccc----------------h------
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSL----------EHKMWDRGVQVISAKG----------------Q------ 49 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~----------------~------ 49 (377)
+|+++|+++||+|+|+++..+.........+ .......|++++.... .
T Consensus 26 ~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (439)
T 3fro_A 26 AISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRIGGGLLDSEDVYGPGWDGLIRKAVTF 105 (439)
T ss_dssp HHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEEESGGGGCSSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEecchhccccccccCCcchhhhhhHHH
Confidence 6899999999999999976543221100000 0000234555543321 0
Q ss_pred ----hHHHh-----hhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccc------------------hh
Q 017085 50 ----ETINT-----ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK------------------LD 102 (377)
Q Consensus 50 ----~~~~~-----~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~------------------~~ 102 (377)
..+.+ ..+||+||+|+...+.....+.. ....|++++.|+.....+. ..
T Consensus 106 ~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~----~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (439)
T 3fro_A 106 GRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKK----YFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 181 (439)
T ss_dssp HHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHH----HHCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSSEECH
T ss_pred HHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhh----ccCCCEEEEecccccccCchHHhCccccccccccceeeH
Confidence 11112 34899999998655433332221 1235899999987542111 22
Q ss_pred hhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEE
Q 017085 103 YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 182 (377)
Q Consensus 103 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 182 (377)
....+..+|.++++|....+.... .++.+..++.+||||+|.+.|.+...+......+..++++++++++ ++|++
T Consensus 182 ~~~~~~~ad~ii~~S~~~~~~~~~----~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~ 256 (439)
T 3fro_A 182 EHTGGYIADIVTTVSRGYLIDEWG----FFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMF 256 (439)
T ss_dssp HHHHHHHCSEEEESCHHHHHHTHH----HHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEE
T ss_pred hhhhhhhccEEEecCHHHHHHHhh----hhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEE
Confidence 233446889999999988776333 4556789999999999998886653222233457889999999887 99999
Q ss_pred ecccc-ccchhHHHHHHHHHHHHHHhhhcccC--CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCH
Q 017085 183 INSVS-RGKGQDLFLHSFYESLELIKEKKLEV--PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTV 257 (377)
Q Consensus 183 ~G~~~-~~Kg~~~ll~a~~~l~~~l~~~~~~~--~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~ 257 (377)
+||+. +.||++.++++++.+.+ +. ++++|+|+|+|.. .+.+.+++++++++ +.+.|.|+. +++
T Consensus 257 ~G~~~~~~Kg~~~li~a~~~l~~-------~~~~~~~~l~i~G~g~~---~~~~~l~~~~~~~~--~~~~~~g~~~~~~~ 324 (439)
T 3fro_A 257 IGRFDRGQKGVDVLLKAIEILSS-------KKEFQEMRFIIIGKGDP---ELEGWARSLEEKHG--NVKVITEMLSREFV 324 (439)
T ss_dssp ECCSSCTTBCHHHHHHHHHHHHT-------SGGGGGEEEEEECCCCH---HHHHHHHHHHHHCT--TEEEECSCCCHHHH
T ss_pred EcccccccccHHHHHHHHHHHHh-------cccCCCeEEEEEcCCCh---hHHHHHHHHHhhcC--CEEEEcCCCCHHHH
Confidence 99999 99999999999997754 33 6899999999852 34588999999988 688899954 779
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-CHHH
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVER 336 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~ 336 (377)
.++|+.||++|+||. .|++|++++|||++|+|||+|+.++..|++.++ +|++++++| +++++++|.++++ +++.
T Consensus 325 ~~~~~~adv~v~ps~--~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d--~~~la~~i~~ll~~~~~~ 399 (439)
T 3fro_A 325 RELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGD--PGELANAILKALELSRSD 399 (439)
T ss_dssp HHHHTTCSEEEECBS--CCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTC--HHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHCCEEEeCCC--CCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCC--HHHHHHHHHHHHhcCHHH
Confidence 999999999999999 899999999999999999999999999999877 999999988 9999999999999 9999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Q 017085 337 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 374 (377)
Q Consensus 337 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 374 (377)
+.++++++++.+ ++|+|+.+++++.++|++++++..+
T Consensus 400 ~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~ 436 (439)
T 3fro_A 400 LSKFRENCKKRA-MSFSWEKSAERYVKAYTGSIDRAFD 436 (439)
T ss_dssp THHHHHHHHHHH-HTSCHHHHHHHHHHHHHTCSCCBCS
T ss_pred HHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999 6799999999999999999876544
No 3
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=3.3e-44 Score=337.97 Aligned_cols=351 Identities=15% Similarity=0.148 Sum_probs=264.9
Q ss_pred cHhhHHHhcCceEEEEEecCCCcc-hhHhhhhhhhhcccCceEEEcc---------------------chhHHHhh--hc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEE-DEVIYSLEHKMWDRGVQVISAK---------------------GQETINTA--LK 57 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~--~~ 57 (377)
+|+++|.+.||+|+|++....... ..+...+.......|++++... .+..++++ .+
T Consensus 41 ~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 120 (499)
T 2r60_A 41 EVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKF 120 (499)
T ss_dssp HHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEECCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEecCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 689999999999999997643211 1100000000012455553321 11223344 48
Q ss_pred ccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccc----------------------hhhhccccccceeee
Q 017085 58 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK----------------------LDYVKHLPLVAGAMI 115 (377)
Q Consensus 58 ~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~----------------------~~~~~~~~~~~~~~~ 115 (377)
||+||+|....+.+...+... ...|++++.|+....... ......++.+|.+++
T Consensus 121 ~Divh~~~~~~~~~~~~~~~~----~~~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~ 196 (499)
T 2r60_A 121 PQVVTTHYGDGGLAGVLLKNI----KGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIV 196 (499)
T ss_dssp CSEEEEEHHHHHHHHHHHHHH----HCCCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCEEEEcCCcchHHHHHHHHh----cCCcEEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999976544332222211 124789999986421110 011334578999999
Q ss_pred eccchhhHhhhhhhhh--hh-c----cCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhC-----CCCCCeEEEEe
Q 017085 116 DSHVTAEYWKNRTRER--LR-I----KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-----VRNEDLLFAII 183 (377)
Q Consensus 116 ~s~~~~~~~~~~~~~~--~~-~----~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~i~~~ 183 (377)
+|....+.+.+ . +| + +..++.|||||+|.+.|.+... ...+..+|+++| ++++.++|+++
T Consensus 197 ~S~~~~~~~~~----~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~i~~v 268 (499)
T 2r60_A 197 STSQERFGQYS----HDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYG----DKIKAKITKYLERDLGSERMELPAIIAS 268 (499)
T ss_dssp SSHHHHHHTTT----SGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCC----HHHHHHHHHHHHHHSCGGGTTSCEEEEC
T ss_pred CCHHHHHHHHh----hhcccccccccCCCCeEEECCCcChhhcCccch----hhhHHHHHHHhcccccccCCCCcEEEEe
Confidence 99999887764 4 56 5 6678999999999887754321 122466788888 87888999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc----------ccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 184 NSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----------QTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 184 G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~----------~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
||+.+.||++.+++|+..+.+... ..++++|+|+.... +.++.++++++++++++.++|+|+|+
T Consensus 269 Grl~~~Kg~~~li~a~~~l~~~~~------~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~ 342 (499)
T 2r60_A 269 SRLDQKKNHYGLVEAYVQNKELQD------KANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPL 342 (499)
T ss_dssp SCCCGGGCHHHHHHHHHTCHHHHH------HCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEEC
T ss_pred ecCccccCHHHHHHHHHHHHHhCC------CceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCC
Confidence 999999999999999997754321 24689999983211 11237899999999999999999999
Q ss_pred c--CCHHHHHHhc----CEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHH
Q 017085 254 T--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNI 327 (377)
Q Consensus 254 ~--~~~~~~~~~a----dv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i 327 (377)
+ +++.++|+.| |++|+||. .|+||++++|||++|+|||+|+.++..|++.++.+|++++++| +++|+++|
T Consensus 343 v~~~~~~~~~~~a~~~~dv~v~pS~--~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d--~~~la~~i 418 (499)
T 2r60_A 343 NSQQELAGCYAYLASKGSVFALTSF--YEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPED--PEDIARGL 418 (499)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECCS--CBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTC--HHHHHHHH
T ss_pred CCHHHHHHHHHhcCcCCCEEEECcc--cCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCC--HHHHHHHH
Confidence 7 7899999999 99999999 8999999999999999999999999999999988999999988 99999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Q 017085 328 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 374 (377)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 374 (377)
.++++|++.+.++++++++.+.++|||+.+++++.++|++++.+.+.
T Consensus 419 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~~~~ 465 (499)
T 2r60_A 419 LKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADRKDE 465 (499)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999998999999999999999999876543
No 4
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.6e-43 Score=327.94 Aligned_cols=341 Identities=18% Similarity=0.214 Sum_probs=260.9
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc--------------ch-------hHH-Hhhh-cc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--------------GQ-------ETI-NTAL-KA 58 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-------~~~-~~~~-~~ 58 (377)
+|+++|.+.||+|++++.......... .....+++++... .. ... ++.. +|
T Consensus 50 ~la~~L~~~G~~V~v~~~~~~~~~~~~------~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (438)
T 3c48_A 50 STATELAKQGIEVDIYTRATRPSQGEI------VRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTY 123 (438)
T ss_dssp HHHHHHHHTTCEEEEEEECCCGGGCSE------EEEETTEEEEEECCSCSSSCCGGGGGGGHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcCCEEEEEecCCCCCCccc------ccccCCeEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHhccCCC
Confidence 689999999999999997653211100 0011234332211 00 111 2222 59
Q ss_pred cEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeeccccc--------------chhhhccccccceeeeeccchhhHh
Q 017085 59 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--------------KLDYVKHLPLVAGAMIDSHVTAEYW 124 (377)
Q Consensus 59 Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~--------------~~~~~~~~~~~~~~~~~s~~~~~~~ 124 (377)
|+||+|....+.....+... ...|++++.|+...... .......++.+|.+++.|....+.+
T Consensus 124 Div~~~~~~~~~~~~~~~~~----~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 199 (438)
T 3c48_A 124 DLIHSHYWLSGQVGWLLRDL----WRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVDNADVLAVNTQEEMQDL 199 (438)
T ss_dssp SEEEEEHHHHHHHHHHHHHH----HTCCEEEECSSCHHHHSCC----CCHHHHHHHHHHHHHHHHCSEEEESSHHHHHHH
T ss_pred CEEEeCCccHHHHHHHHHHH----cCCCEEEEecCCcccccccccccCCcchHHHHHHHHHHHhcCCEEEEcCHHHHHHH
Confidence 99999975433322222211 12578999998742110 0011234578999999999998887
Q ss_pred hhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHH
Q 017085 125 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLE 204 (377)
Q Consensus 125 ~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~ 204 (377)
.+ .+|++..++.+||||+|.+.+.+... ..+..+|++++++++.++|+++|++.+.||++.+++++..+.+
T Consensus 200 ~~----~~g~~~~k~~vi~ngvd~~~~~~~~~-----~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~ 270 (438)
T 3c48_A 200 MH----HYDADPDRISVVSPGADVELYSPGND-----RATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFD 270 (438)
T ss_dssp HH----HHCCCGGGEEECCCCCCTTTSCCC---------CHHHHHHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHH
T ss_pred HH----HhCCChhheEEecCCccccccCCccc-----chhhhhHHhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHh
Confidence 65 57778889999999999887654321 1134578899998899999999999999999999999998765
Q ss_pred HHhhhcccCC--CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccch
Q 017085 205 LIKEKKLEVP--SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGR 280 (377)
Q Consensus 205 ~l~~~~~~~~--~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~ 280 (377)
+.| +++|+|+|+.... .++.+.++++++++++.++|+|+|++ +++.++|+.||++|+||. .|++|+
T Consensus 271 -------~~p~~~~~l~i~G~~~~~-g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~ 340 (438)
T 3c48_A 271 -------RDPDRNLRVIICGGPSGP-NATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSF--NESFGL 340 (438)
T ss_dssp -------HCTTCSEEEEEECCBC-------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCS--CCSSCH
T ss_pred -------hCCCcceEEEEEeCCCCC-CcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECcc--ccCCch
Confidence 224 7999999982110 04678899999999999999999998 789999999999999999 899999
Q ss_pred HHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 017085 281 ITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAER 360 (377)
Q Consensus 281 ~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 360 (377)
+++|||++|+|||+++.++..+++.++.+|++++++| +++++++|.++++|++.+.++++++++.+.+ |+|+.++++
T Consensus 341 ~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~ 417 (438)
T 3c48_A 341 VAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHS--PHAWADALATLLDDDETRIRMGEDAVEHART-FSWAATAAQ 417 (438)
T ss_dssp HHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCHHHHHHH
Confidence 9999999999999999999999999999999999888 9999999999999999999999999999988 999999999
Q ss_pred HHHHHHHHHhcccc
Q 017085 361 IAVVLKEVLKKSKS 374 (377)
Q Consensus 361 ~~~~~~~~~~~~~~ 374 (377)
+.++|++++.+.+.
T Consensus 418 ~~~~~~~~~~~~~~ 431 (438)
T 3c48_A 418 LSSLYNDAIANENV 431 (438)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhccc
Confidence 99999999987643
No 5
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=2.4e-43 Score=324.65 Aligned_cols=336 Identities=18% Similarity=0.211 Sum_probs=251.7
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhccc-CceEEE--cc-------chhHHHhhhcccEEEEcCchhhhH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVIS--AK-------GQETINTALKADLIVLNTAVAGKW 71 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~-------~~~~~~~~~~~Div~~~~~~~~~~ 71 (377)
+|+++|.+.||+|++++.............+...+... .+.+.. .. ....+++..+||+||+|+.....+
T Consensus 61 ~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~ 140 (416)
T 2x6q_A 61 SLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLNVNRENSKFIDLSSFDYVLVHDPQPAAL 140 (416)
T ss_dssp HHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHTTCCSCCCCHHHHHHHHHHHHHHHHSSCGGGSSEEEEESSTTGGG
T ss_pred HHHHHHHhCCCeEEEEEccCCcchhhhhcccceeecccccccccHHHHHHHHHHHHHHHHHHhhcCCCEEEEeccchhhH
Confidence 58999999999999998765432211111111111111 111100 00 112223456999999998765433
Q ss_pred HHHHhhcCCCccccceeEEeeeecccccc---hhhhccccccceee-eeccchhhHhhhhhhhhhhccCCCeEEEEcCCh
Q 017085 72 LDAVLKEDVPRVLPNVLWWIHEMRGHYFK---LDYVKHLPLVAGAM-IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 147 (377)
Q Consensus 72 ~~~~~~~~~~~~~~~~v~~~h~~~~~~~~---~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~ 147 (377)
.. +. ... .|++++.|+....... ....+.+..++.++ ++|....+. ++..++.+||||+|
T Consensus 141 ~~-~~----~~~-~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~----------~~~~~~~vi~ngvd 204 (416)
T 2x6q_A 141 IE-FY----EKK-SPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHLPEYVQPE----------LDRNKAVIMPPSID 204 (416)
T ss_dssp GG-GS----CCC-SCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEESSGGGSCTT----------SCTTTEEECCCCBC
T ss_pred HH-HH----Hhc-CCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEechHHHHhh----------CCccceEEeCCCCC
Confidence 22 11 111 6899999976443211 22233455667766 555544332 33468999999999
Q ss_pred hhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc
Q 017085 148 KELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 227 (377)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~ 227 (377)
...+...... ...+..+|++++++++.++++++||+.+.||++.+++++..+.+ +.++++|+|+|+++..
T Consensus 205 ~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~-------~~~~~~l~i~G~g~~~ 274 (416)
T 2x6q_A 205 PLSEKNVELK---QTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKE-------KIPGVQLLLVGVMAHD 274 (416)
T ss_dssp TTSTTTSCCC---HHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHH-------HCTTCEEEEEECCCTT
T ss_pred hhhhcccccC---hhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHH-------hCCCeEEEEEecCccc
Confidence 8655322111 12356788999999899999999999999999999999998765 3478999999998654
Q ss_pred ccHHHHHHHHHHHhcCCCCcEEEecCcC-----CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCccc
Q 017085 228 QTKFESELRNYVMQKKIQDRVHFVNKTL-----TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTE 302 (377)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~v~~~g~~~-----~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e 302 (377)
.+.+.+.++++++++++.++|+|+|+.. ++.++|+.||++++||. .|+||++++|||++|+|||+|+.++..|
T Consensus 275 ~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~--~E~~~~~~lEAma~G~PvI~~~~~g~~e 352 (416)
T 2x6q_A 275 DPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSI--REGFGLTVTEAMWKGKPVIGRAVGGIKF 352 (416)
T ss_dssp CHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCS--SCSSCHHHHHHHHTTCCEEEESCHHHHH
T ss_pred chhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCC--cCCCccHHHHHHHcCCCEEEccCCCChh
Confidence 3345678899999999999999999653 79999999999999999 8999999999999999999999999999
Q ss_pred ceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017085 303 IVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 303 ~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 369 (377)
++.++.+|++++ | +++++++|.++++|++.+.++++++++.+.++|+|+.+++++.++|++++
T Consensus 353 ~i~~~~~g~l~~--d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 353 QIVDGETGFLVR--D--ANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HCCBTTTEEEES--S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHTC-
T ss_pred heecCCCeEEEC--C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhh
Confidence 999999999998 5 99999999999999999999999999999889999999999999998765
No 6
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=5.8e-43 Score=319.69 Aligned_cols=332 Identities=20% Similarity=0.238 Sum_probs=264.2
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc------------chhHHHhhhcccEEEEcCchhh
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------GQETINTALKADLIVLNTAVAG 69 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Div~~~~~~~~ 69 (377)
+|+++| .||+|++++........ .......++.++... .+..++++.+||+||+|+....
T Consensus 27 ~l~~~L--~g~~v~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Dvv~~~~~~~~ 98 (394)
T 3okp_A 27 DFIATQ--DPESIVVFASTQNAEEA------HAYDKTLDYEVIRWPRSVMLPTPTTAHAMAEIIREREIDNVWFGAAAPL 98 (394)
T ss_dssp HHHTTS--CGGGEEEEEECSSHHHH------HHHHTTCSSEEEEESSSSCCSCHHHHHHHHHHHHHTTCSEEEESSCTTG
T ss_pred HHHHHh--cCCeEEEEECCCCccch------hhhccccceEEEEccccccccchhhHHHHHHHHHhcCCCEEEECCcchH
Confidence 567788 59999999987643210 111123456554432 3455667789999999987655
Q ss_pred hHHHHHhhcCCCccccceeEEeeeecccc-----cchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEc
Q 017085 70 KWLDAVLKEDVPRVLPNVLWWIHEMRGHY-----FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHL 144 (377)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~n 144 (377)
.++..+.+.. ..++++++.|+....+ ........++.+|.+++.|....+.+.+ .++ +..++.++||
T Consensus 99 ~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~----~~~-~~~~~~vi~n 170 (394)
T 3okp_A 99 ALMAGTAKQA---GASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKS----AFG-SHPTFEHLPS 170 (394)
T ss_dssp GGGHHHHHHT---TCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHHHH----HHC-SSSEEEECCC
T ss_pred HHHHHHHHhc---CCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHHHH----hcC-CCCCeEEecC
Confidence 4444333221 1246888999754322 1223345568899999999999888875 333 4578999999
Q ss_pred CChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecC
Q 017085 145 GNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD 224 (377)
Q Consensus 145 gi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~ 224 (377)
|+|.+.+.+... ..+..++++++++++.++++++|++.+.||++.+++++..+.+ +.++++|+|+|++
T Consensus 171 gv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~-------~~~~~~l~i~G~g 238 (394)
T 3okp_A 171 GVDVKRFTPATP-----EDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIA-------ARPDAQLLIVGSG 238 (394)
T ss_dssp CBCTTTSCCCCH-----HHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHHH-------HSTTCEEEEECCC
T ss_pred CcCHHHcCCCCc-----hhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHHh-------hCCCeEEEEEcCc
Confidence 999987754221 2257789999999888999999999999999999999997765 3489999999998
Q ss_pred CCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCC-------CccchHHHHHHHcCCcEEEe
Q 017085 225 MNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG-------ECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~-------e~~~~~~~Ea~a~g~PvI~s 295 (377)
++.+.+++++ .++.++|+|+|++ +++.++|+.||++++||. . |++|++++|||++|+|||++
T Consensus 239 -----~~~~~l~~~~--~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~--~~~~~~~~e~~~~~~~Ea~a~G~PvI~~ 309 (394)
T 3okp_A 239 -----RYESTLRRLA--TDVSQNVKFLGRLEYQDMINTLAAADIFAMPAR--TRGGGLDVEGLGIVYLEAQACGVPVIAG 309 (394)
T ss_dssp -----TTHHHHHHHT--GGGGGGEEEEESCCHHHHHHHHHHCSEEEECCC--CBGGGTBCCSSCHHHHHHHHTTCCEEEC
T ss_pred -----hHHHHHHHHH--hcccCeEEEcCCCCHHHHHHHHHhCCEEEecCc--cccccccccccCcHHHHHHHcCCCEEEe
Confidence 4677788777 5667899999998 899999999999999999 7 99999999999999999999
Q ss_pred CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 017085 296 AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 373 (377)
Q Consensus 296 ~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 373 (377)
+.++..|++.++ +|++++++| +++++++|.++++|++.+.++++++++.+.++|+|+.+++++.++|+++..+..
T Consensus 310 ~~~~~~e~i~~~-~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~r~~~ 384 (394)
T 3okp_A 310 TSGGAPETVTPA-TGLVVEGSD--VDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEPRKLA 384 (394)
T ss_dssp SSTTGGGGCCTT-TEEECCTTC--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCCC---
T ss_pred CCCChHHHHhcC-CceEeCCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccCcc
Confidence 999999999998 999999988 999999999999999999999999999999999999999999999998765443
No 7
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1.1e-42 Score=326.47 Aligned_cols=294 Identities=16% Similarity=0.128 Sum_probs=230.8
Q ss_pred hhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-cc-------------------------hhhhcccc
Q 017085 55 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-FK-------------------------LDYVKHLP 108 (377)
Q Consensus 55 ~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-~~-------------------------~~~~~~~~ 108 (377)
..+||+||+|+...+.+...+... .....|++++.|+..... +. ......+.
T Consensus 128 ~~~~DiIh~~~~~~~~~~~~~~~~--~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (485)
T 1rzu_A 128 GWRPDMVHAHDWQAAMTPVYMRYA--ETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQ 205 (485)
T ss_dssp SCCCSEEEEEHHHHTTHHHHHHHS--SSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHH
T ss_pred CCCCCEEEecccchhHHHHHHhhc--ccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHh
Confidence 568999999985544332222221 112358999999864210 00 11122346
Q ss_pred ccceeeeeccchhhHhhhhhhhhhh--------ccCCCeEEEEcCChhhhHHHhhhh-----------hhhhhhHHHHHH
Q 017085 109 LVAGAMIDSHVTAEYWKNRTRERLR--------IKMPDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRE 169 (377)
Q Consensus 109 ~~~~~~~~s~~~~~~~~~~~~~~~~--------~~~~~~~vi~ngi~~~~~~~~~~~-----------~~~~~~~~~~r~ 169 (377)
.+|.++++|....+.+.+. .+| .+..++.+||||+|.+.|.+.... ......+..+|+
T Consensus 206 ~ad~vi~~S~~~~~~~~~~---~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 282 (485)
T 1rzu_A 206 TATALSTVSPSYAEEILTA---EFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAE 282 (485)
T ss_dssp HCSEEEESCHHHHHHTTSH---HHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHH
T ss_pred hcCEEEecCHhHHHHHhcc---ccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHH
Confidence 7899999999998877642 123 456789999999998877543211 011223577899
Q ss_pred HhCCCCC-CeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcE
Q 017085 170 SLGVRNE-DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 248 (377)
Q Consensus 170 ~~~~~~~-~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v 248 (377)
+++++++ .++|+++||+.++||++.+++|+..+.+ ++++|+|+|+|+. ++.+.+++++++++ ++|
T Consensus 283 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~~v 348 (485)
T 1rzu_A 283 HFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS---------LGGRLVVLGAGDV---ALEGALLAAASRHH--GRV 348 (485)
T ss_dssp HHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH---------TTCEEEEEECBCH---HHHHHHHHHHHHTT--TTE
T ss_pred hcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHh---------cCceEEEEeCCch---HHHHHHHHHHHhCC--CcE
Confidence 9999875 6799999999999999999999998755 6899999999842 36788899988885 678
Q ss_pred E-EecCc-CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecC---------cceeeecCCC
Q 017085 249 H-FVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGLLHPVGK 317 (377)
Q Consensus 249 ~-~~g~~-~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~---------~~g~~~~~~~ 317 (377)
+ |.|+. +++.++|+.||++|+||. .|+||++++|||+||+|||+|+.||+.|++.++ .+|++++++|
T Consensus 349 ~~~~g~~~~~~~~~~~~adv~v~pS~--~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d 426 (485)
T 1rzu_A 349 GVAIGYNEPLSHLMQAGCDAIIIPSR--FEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVT 426 (485)
T ss_dssp EEEESCCHHHHHHHHHHCSEEEECCS--CCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCS
T ss_pred EEecCCCHHHHHHHHhcCCEEEECcc--cCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCC
Confidence 7 78887 445899999999999999 999999999999999999999999999999988 8999999988
Q ss_pred CChhHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Q 017085 318 EGITPLAKNIVKLA---THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKS 374 (377)
Q Consensus 318 ~~~~~la~~i~~l~---~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 374 (377)
+++|+++|.+++ +|++.+.++++++++ ++|||+.+++++.++|++++.....
T Consensus 427 --~~~la~~i~~ll~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~y~~~~~~~~~ 481 (485)
T 1rzu_A 427 --LDGLKQAIRRTVRYYHDPKLWTQMQKLGMK---SDVSWEKSAGLYAALYSQLISKGHH 481 (485)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---CCCBHHHHHHHHHHHHHHHTC----
T ss_pred --HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HhCChHHHHHHHHHHHHHhhCCCCC
Confidence 999999999999 799999999999874 7899999999999999999877655
No 8
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=8.2e-42 Score=320.56 Aligned_cols=293 Identities=14% Similarity=0.111 Sum_probs=228.6
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc-cc-------------------------hhhhccccc
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-FK-------------------------LDYVKHLPL 109 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~-~~-------------------------~~~~~~~~~ 109 (377)
.+||+||+|+...+.+...+.. .....|++++.|+..... +. ......+..
T Consensus 128 ~~~Divh~~~~~~~~~~~~~~~---~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (485)
T 2qzs_A 128 WRPDVVHAHDWHAGLAPAYLAA---RGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYY 204 (485)
T ss_dssp CCCSEEEEETGGGTTHHHHHHH---TTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHH
T ss_pred CCCCEEEeeccchhHHHHHHhh---ccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHh
Confidence 6899999998654433222221 112358999999864210 00 111223467
Q ss_pred cceeeeeccchhhHhhhhhhhhhhc--------cC--CCeEEEEcCChhhhHHHhhhh-----------hhhhhhHHHHH
Q 017085 110 VAGAMIDSHVTAEYWKNRTRERLRI--------KM--PDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVR 168 (377)
Q Consensus 110 ~~~~~~~s~~~~~~~~~~~~~~~~~--------~~--~~~~vi~ngi~~~~~~~~~~~-----------~~~~~~~~~~r 168 (377)
+|.++++|....+.+.+. .+|. +. .++.+||||+|.+.|.+.... ......+..+|
T Consensus 205 ad~vi~~S~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 281 (485)
T 2qzs_A 205 ADHITAVSPTYAREITEP---QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQ 281 (485)
T ss_dssp CSEEEESSHHHHHHTTSH---HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHH
T ss_pred cCeEEecCHHHHHHHhcc---ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHH
Confidence 899999999988877642 1343 22 789999999998877543210 01122357789
Q ss_pred HHhCCCC--CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCC
Q 017085 169 ESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD 246 (377)
Q Consensus 169 ~~~~~~~--~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~ 246 (377)
+++++++ +.++|+++||+.+.||++.+++|+..+.+ ++++|+|+|+|++ ++.+.+++++++++ +
T Consensus 282 ~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~---------~~~~l~ivG~g~~---~~~~~l~~~~~~~~--~ 347 (485)
T 2qzs_A 282 IAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE---------QGGQLALLGAGDP---VLQEGFLAAAAEYP--G 347 (485)
T ss_dssp HHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH---------TTCEEEEEEEECH---HHHHHHHHHHHHST--T
T ss_pred HHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh---------CCcEEEEEeCCch---HHHHHHHHHHHhCC--C
Confidence 9999986 77999999999999999999999998755 5899999999742 36788899998886 6
Q ss_pred cEE-EecCc-CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecC---------cceeeecC
Q 017085 247 RVH-FVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG---------TTGLLHPV 315 (377)
Q Consensus 247 ~v~-~~g~~-~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~---------~~g~~~~~ 315 (377)
+|+ |.|+. +++.++|+.||++|+||. .|+||++++|||+||+|||+|+.||+.|++.++ .+|+++++
T Consensus 348 ~v~~~~g~~~~~~~~~~~~adv~v~pS~--~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~ 425 (485)
T 2qzs_A 348 QVGVQIGYHEAFSHRIMGGADVILVPSR--FEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFED 425 (485)
T ss_dssp TEEEEESCCHHHHHHHHHHCSEEEECCS--CCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECS
T ss_pred cEEEeCCCCHHHHHHHHHhCCEEEECCc--cCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECC
Confidence 786 88887 446899999999999999 999999999999999999999999999999988 89999999
Q ss_pred CCCChhHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccc
Q 017085 316 GKEGITPLAKNIVKLA---THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSKSH 375 (377)
Q Consensus 316 ~~~~~~~la~~i~~l~---~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 375 (377)
+| +++|+++|.+++ +|++.+.++++++++ ++|||+.+++++.++|++++.+...+
T Consensus 426 ~d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~ly~~~~~~~~~~ 483 (485)
T 2qzs_A 426 SN--AWSLLRAIRRAFVLWSRPSLWRFVQRQAMA---MDFSWQVAAKSYRELYYRLKLEHHHH 483 (485)
T ss_dssp SS--HHHHHHHHHHHHHHHTSHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHC------
T ss_pred CC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHHhhhhhccc
Confidence 88 999999999999 799999999999874 78999999999999999987765543
No 9
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=4.8e-42 Score=315.69 Aligned_cols=336 Identities=14% Similarity=0.143 Sum_probs=255.5
Q ss_pred cHhhHHHhcCceEEEEEecCCCcch-hHhh----hhhhhhcccCce--EEEccchhHHHhhhcccEEEEcCchhhhHHHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEED-EVIY----SLEHKMWDRGVQ--VISAKGQETINTALKADLIVLNTAVAGKWLDA 74 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~-~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~ 74 (377)
+|+++|++. |+|++++........ .... .....+ ..+. ..........++..+||+||+|..........
T Consensus 22 ~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~Div~~~~~~~~~~~~~ 98 (413)
T 3oy2_A 22 AIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHV--RGLNEQGFYYSGLSEFIDVHKPDIVMIYNDPIVIGNYL 98 (413)
T ss_dssp HHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHH--TTCCSTTCCHHHHHHHHHHHCCSEEEEEECHHHHHHHH
T ss_pred HHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccc--cccccccchHHHHHHHHHhcCCCEEEEcchHHHHHHHH
Confidence 589999999 999999965432110 0000 000000 1111 01111234556778999999995443322222
Q ss_pred HhhcCCCccccceeEEeeeecccccchhhhccccccc--eeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHH
Q 017085 75 VLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVA--GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELME 152 (377)
Q Consensus 75 ~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~ 152 (377)
.....++.. .+.+...|....... ......+..++ .+++.|....+.+.+ +|. ..++.+||||+|.+.+
T Consensus 99 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ii~~S~~~~~~~~~-----~~~-~~~~~vi~ngvd~~~~- 169 (413)
T 3oy2_A 99 LAMGKCSHR-TKIVLYVDLVSKNIR-ENLWWIFSHPKVVGVMAMSKCWISDICN-----YGC-KVPINIVSHFVDTKTI- 169 (413)
T ss_dssp HHGGGCCSC-CEEEEEECCCSBSCC-GGGGGGGGCTTEEEEEESSTHHHHHHHH-----TTC-CSCEEECCCCCCCCCC-
T ss_pred HHhccCCCC-CceeeeccccchhhH-HHHHHHHhccCCceEEEcCHHHHHHHHH-----cCC-CCceEEeCCCCCHHHH-
Confidence 222233322 355566665533332 33466678867 999999999888774 455 5789999999999876
Q ss_pred HhhhhhhhhhhHHHHHHHhCCCC--CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcc-c
Q 017085 153 VAEDNVAKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ-T 229 (377)
Q Consensus 153 ~~~~~~~~~~~~~~~r~~~~~~~--~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~-~ 229 (377)
...++.+++++ +.++|+++||+.+.||++.+++|+..+.+ +.++++|+|+|++.... .
T Consensus 170 ------------~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~-------~~~~~~l~ivG~g~~~~~~ 230 (413)
T 3oy2_A 170 ------------YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFIS-------KYPDAKVRFLCNSHHESKF 230 (413)
T ss_dssp ------------TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHH-------HCTTCCEEEEEECCTTCSC
T ss_pred ------------HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHH-------hCCCcEEEEEeCCcccchh
Confidence 12466778877 88999999999999999999999998765 44889999999986422 1
Q ss_pred HHHHHHHHHHHhcCCCCc-------EEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCc
Q 017085 230 KFESELRNYVMQKKIQDR-------VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT 300 (377)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~-------v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~ 300 (377)
...+.++++++++++.++ +.+.|++ +++.++|+.||++++||. .|+||++++|||++|+|||+|+.+|.
T Consensus 231 ~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~--~E~~~~~~lEAma~G~PvI~s~~~g~ 308 (413)
T 3oy2_A 231 DLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSS--GEGFGLCSAEGAVLGKPLIISAVGGA 308 (413)
T ss_dssp CHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCS--CCSSCHHHHHHHTTTCCEEEECCHHH
T ss_pred hHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCC--cCCCCcHHHHHHHcCCCEEEcCCCCh
Confidence 245889999999999987 8888986 589999999999999999 99999999999999999999999999
Q ss_pred ccceecCcc---------------ee--eecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017085 301 TEIVVNGTT---------------GL--LHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 363 (377)
Q Consensus 301 ~e~~~~~~~---------------g~--~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 363 (377)
.|++.++.+ |+ +++++| +++|+++| ++++|++.+.++++++++.+.++|||+.+++++.+
T Consensus 309 ~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d--~~~la~~i-~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 385 (413)
T 3oy2_A 309 DDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIID--VDDLVEAF-TFFKDEKNRKEYGKRVQDFVKTKPTWDDISSDIID 385 (413)
T ss_dssp HHHSCTTTSEEECCCEEEECTTTCSSCCEEEECC--HHHHHHHH-HHTTSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHccCcccccccccccccccccCcceeeCCCC--HHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999998877 99 999888 99999999 99999999999999999999889999999999999
Q ss_pred HHHHHHhccc
Q 017085 364 VLKEVLKKSK 373 (377)
Q Consensus 364 ~~~~~~~~~~ 373 (377)
+|++++++..
T Consensus 386 ~~~~~~~~~~ 395 (413)
T 3oy2_A 386 FFNSLLRVES 395 (413)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHhhcC
Confidence 9999986543
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=2.1e-42 Score=313.85 Aligned_cols=327 Identities=15% Similarity=0.116 Sum_probs=251.8
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc---------------chhHHHhhhcccEEEEcCc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---------------GQETINTALKADLIVLNTA 66 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~Div~~~~~ 66 (377)
+|+++|+++||+|++++........ .++++.... .+..+++..+||+||+|..
T Consensus 22 ~l~~~L~~~G~~V~v~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~Dvv~~~~~ 89 (374)
T 2iw1_A 22 RIASTVAARGHHVRVYTQSWEGDCP------------KAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNK 89 (374)
T ss_dssp HHHHHHHHTTCCEEEEESEECSCCC------------TTCEEEECCCCCSSHHHHHHHHHHHHHHHHHHSCCSEEEESSC
T ss_pred HHHHHHHhCCCeEEEEecCCCCCCC------------CCcEEEEEccCcccchhhHHHHHHHHHHHHhccCCCEEEEecC
Confidence 6899999999999999965322111 133332211 2334556789999999975
Q ss_pred hhhhHHHHHhhcCCCccccceeEEeeeecccccch------hhhccc--cccceeeeeccchhhHhhhhhhhhhhccCCC
Q 017085 67 VAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHL--PLVAGAMIDSHVTAEYWKNRTRERLRIKMPD 138 (377)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~------~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 138 (377)
.++..+.. .......+.+.+.|......... .....+ ..+|.++++|....+.+.+ .+|++..+
T Consensus 90 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~----~~~~~~~~ 161 (374)
T 2iw1_A 90 MPGLDVYF----AADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQK----HYQTEPER 161 (374)
T ss_dssp CTTCSEEE----CCSCCHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHH----HHCCCGGG
T ss_pred CCCceeee----ccccccceeeeecccchhhhcHHHHHHHHHHHHHhhccCCcEEEEcCHHHHHHHHH----HhCCChhh
Confidence 43321110 00111123333444432211110 011112 2689999999999888765 56777889
Q ss_pred eEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEE
Q 017085 139 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 218 (377)
Q Consensus 139 ~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l 218 (377)
+.++|||+|.+.+.+... ...+..+|++++++++.++++++|++.+.||++.+++++..+.+.. .++++|
T Consensus 162 ~~vi~ngv~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~------~~~~~l 231 (374)
T 2iw1_A 162 FQILPPGIYPDRKYSEQI----PNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESL------RHNTLL 231 (374)
T ss_dssp EEECCCCCCGGGSGGGSC----TTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHH------HHTEEE
T ss_pred eEEecCCcCHHhcCcccc----hhHHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHHHHHHHhHhcc------CCceEE
Confidence 999999999987765432 1225678999999999999999999999999999999998764421 158999
Q ss_pred EEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC
Q 017085 219 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 219 ~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~ 298 (377)
+++|++. .+.++++++++++.++|+|+|+.+++.++|+.||++++||. .|++|++++|||++|+|||+++.+
T Consensus 232 ~i~G~g~------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~--~e~~~~~~~Ea~a~G~Pvi~~~~~ 303 (374)
T 2iw1_A 232 FVVGQDK------PRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAY--QEAAGIVLLEAITAGLPVLTTAVC 303 (374)
T ss_dssp EEESSSC------CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCS--CCSSCHHHHHHHHHTCCEEEETTS
T ss_pred EEEcCCC------HHHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEeccc--cCCcccHHHHHHHCCCCEEEecCC
Confidence 9999973 26788888999998999999999999999999999999999 899999999999999999999999
Q ss_pred CcccceecCcceeeec-CCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017085 299 GTTEIVVNGTTGLLHP-VGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 299 ~~~e~~~~~~~g~~~~-~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 369 (377)
+..+++.++.+|++++ ++| +++++++|.++++|++.+.++++++++.+. +|+|+.+++++.++++..+
T Consensus 304 ~~~e~i~~~~~g~~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l 372 (374)
T 2iw1_A 304 GYAHYIADANCGTVIAEPFS--QEQLNEVLRKALTQSPLRMAWAENARHYAD-TQDLYSLPEKAADIITGGL 372 (374)
T ss_dssp TTTHHHHHHTCEEEECSSCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-HSCCSCHHHHHHHHHHCC-
T ss_pred CchhhhccCCceEEeCCCCC--HHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhh
Confidence 9999999999999998 777 999999999999999999999999999886 4799999999999988654
No 11
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=4.3e-41 Score=325.47 Aligned_cols=298 Identities=15% Similarity=0.180 Sum_probs=227.5
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccc----------hh---------hhccccccceeeee
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK----------LD---------YVKHLPLVAGAMID 116 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~----------~~---------~~~~~~~~~~~~~~ 116 (377)
.+||+||+|...++.....+... ...|++++.|........ .. ....+..+|.++++
T Consensus 406 ~~PDVIHsH~~~sglva~llar~----~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~ 481 (816)
T 3s28_A 406 GKPDLIIGNYSDGNLVASLLAHK----LGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITS 481 (816)
T ss_dssp SCCSEEEEEHHHHHHHHHHHHHH----HTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEES
T ss_pred CCCeEEEeCCchHHHHHHHHHHH----cCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEEC
Confidence 37999999976544333322221 135889999976421110 00 01245789999999
Q ss_pred ccchhhHhhhhh---hhh--------------hhccCCCeEEEEcCChhhhHHHhhhhhhh-----------hhhHHHHH
Q 017085 117 SHVTAEYWKNRT---RER--------------LRIKMPDTYVVHLGNSKELMEVAEDNVAK-----------RVLREHVR 168 (377)
Q Consensus 117 s~~~~~~~~~~~---~~~--------------~~~~~~~~~vi~ngi~~~~~~~~~~~~~~-----------~~~~~~~r 168 (377)
|....+.+.+.. ... .+...+++.|||||+|.+.|.+....... .......+
T Consensus 482 S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r 561 (816)
T 3s28_A 482 TFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENK 561 (816)
T ss_dssp CHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBT
T ss_pred CHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHH
Confidence 988776422110 000 11223489999999999887654321100 00011234
Q ss_pred HHhCC--CCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc------ccHHHHHHHHHHH
Q 017085 169 ESLGV--RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA------QTKFESELRNYVM 240 (377)
Q Consensus 169 ~~~~~--~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~------~~~~~~~l~~~~~ 240 (377)
+.+|+ +++.++|+++||+.+.||++.+++|+..+.+. .++++|+|+|++.+. ...+.+.++++++
T Consensus 562 ~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~-------~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~ 634 (816)
T 3s28_A 562 EHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRL-------RELANLVVVGGDRRKESKDNEEKAEMKKMYDLIE 634 (816)
T ss_dssp TEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHH-------HHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhh-------CCCeEEEEEeCCCcccccchhhHHHHHHHHHHHH
Confidence 55666 67889999999999999999999999987542 268999999998620 1126788999999
Q ss_pred hcCCCCcEEEecCc------CCHHHHHH-hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeee
Q 017085 241 QKKIQDRVHFVNKT------LTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLH 313 (377)
Q Consensus 241 ~~~~~~~v~~~g~~------~~~~~~~~-~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~ 313 (377)
++++.++|.|+|++ +++..+|+ ++|++++||. .|+||++++|||+||+|||+|+.||..|++.++.+|+++
T Consensus 635 ~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~--~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv 712 (816)
T 3s28_A 635 EYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHI 712 (816)
T ss_dssp HTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCS--CBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEE
T ss_pred HcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCC--ccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEe
Confidence 99999999999964 45888888 6899999999 999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHh----hCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017085 314 PVGKEGITPLAKNIVKLA----THVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 368 (377)
Q Consensus 314 ~~~~~~~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 368 (377)
+++| +++++++|.+++ +|++.+.++++++++.+.++|||+.+++++.++|+..
T Consensus 713 ~p~D--~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 713 DPYH--GDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp CTTS--HHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred CCCC--HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9988 999999997766 8999999999999999999999999999999999865
No 12
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=3.9e-40 Score=309.31 Aligned_cols=241 Identities=20% Similarity=0.207 Sum_probs=191.8
Q ss_pred cccceeeeeccchhhHhhhhhhhh----hhccCCCeEEEEcCChhhhHHHhhh------------hhhhhhhHHHHHHHh
Q 017085 108 PLVAGAMIDSHVTAEYWKNRTRER----LRIKMPDTYVVHLGNSKELMEVAED------------NVAKRVLREHVRESL 171 (377)
Q Consensus 108 ~~~~~~~~~s~~~~~~~~~~~~~~----~~~~~~~~~vi~ngi~~~~~~~~~~------------~~~~~~~~~~~r~~~ 171 (377)
..+|.++++|...++.+.+..... ......++.+|+||+|.+.|.+..+ ...+...+..+++.+
T Consensus 240 ~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~ 319 (536)
T 3vue_A 240 LEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEA 319 (536)
T ss_dssp HHCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHT
T ss_pred HhccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhc
Confidence 468999999999887765432100 0123568999999999998866421 122344567788888
Q ss_pred CCC--CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE
Q 017085 172 GVR--NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 249 (377)
Q Consensus 172 ~~~--~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~ 249 (377)
|++ ++.++|+++||+.++||++.+++|+.++.+ .+.+++|+|.|.. .....++.....+ ++++.
T Consensus 320 gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~---------~~~~l~l~G~G~~---~~~~~~~~~~~~~--~~~v~ 385 (536)
T 3vue_A 320 GLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ---------EDVQIVLLGTGKK---KFEKLLKSMEEKY--PGKVR 385 (536)
T ss_dssp TSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT---------SSCEEEEECCBCH---HHHHHHHHHHHHS--TTTEE
T ss_pred CCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHh---------hCCeEEEEeccCc---hHHHHHHHHHhhc--CCceE
Confidence 886 456899999999999999999999997744 6789999998753 3455566665555 46788
Q ss_pred EecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCccee----------eecCCC
Q 017085 250 FVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGL----------LHPVGK 317 (377)
Q Consensus 250 ~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~----------~~~~~~ 317 (377)
+.+.. +++..+|+.||++|+||. .|+||++++|||+||+|||+|++||++|++.++.+|+ ++++.|
T Consensus 386 ~~~~~~~~~~~~~~~~aD~~v~PS~--~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d 463 (536)
T 3vue_A 386 AVVKFNAPLAHLIMAGADVLAVPSR--FEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSD 463 (536)
T ss_dssp EECSCCHHHHHHHHHHCSEEEECCS--CCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHH
T ss_pred EEEeccHHHHHHHHHhhheeecccc--cCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCC
Confidence 88865 568889999999999999 9999999999999999999999999999999999998 556666
Q ss_pred CChhHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017085 318 EGITPLAKNIVKLAT--HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 318 ~~~~~la~~i~~l~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 369 (377)
+++|+++|.++++ +.+.++++.+++ +.++|||++++++|+++|+++.
T Consensus 464 --~~~la~ai~ral~~~~~~~~~~~~~~a---m~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 464 --VKKVAATLKRAIKVVGTPAYEEMVRNC---MNQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp --HHHHHHHHHHHHHHTTSHHHHHHHHHH---HHSCCSSHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHhcCcHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHhh
Confidence 8999999998876 444567776665 4478999999999999999864
No 13
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=6.4e-40 Score=300.76 Aligned_cols=329 Identities=18% Similarity=0.165 Sum_probs=248.1
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhccc----CceEEEc-----cchhHHHhhhcccEEEEcCchhhhHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR----GVQVISA-----KGQETINTALKADLIVLNTAVAGKWL 72 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~Div~~~~~~~~~~~ 72 (377)
+++++|.+.||+|++++..................... ....... ..+..+++..+||+||+|......+.
T Consensus 43 ~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~ 122 (406)
T 2gek_A 43 QLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPYNGSVARLRFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLS 122 (406)
T ss_dssp HHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------CCHHHHHHHHHHHHHHCCSEEEEECCCSSSHH
T ss_pred HHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccccCCcccccccHHHHHHHHHHHHhcCCCEEEECCccchHHH
Confidence 58999999999999999765432100000000000000 0000011 23445567789999999987654432
Q ss_pred HHHhhcCCCccccceeEEeeeeccccc-----chhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCCh
Q 017085 73 DAVLKEDVPRVLPNVLWWIHEMRGHYF-----KLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 147 (377)
Q Consensus 73 ~~~~~~~~~~~~~~~v~~~h~~~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~ 147 (377)
..+... ...|++++.|+...... .......++.+|.+++.|....+.+.+ .+ +..++ ++|||+|
T Consensus 123 ~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~----~~--~~~~~-vi~~~v~ 191 (406)
T 2gek_A 123 MLALQA----AEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLARRWQME----AL--GSDAV-EIPNGVD 191 (406)
T ss_dssp HHHHHH----EESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEESSHHHHHHHHH----HH--SSCEE-ECCCCBC
T ss_pred HHHHHh----cCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEECCHHHHHHHHH----hc--CCCcE-EecCCCC
Confidence 222221 13588999998643221 111224557899999999998888765 23 44678 9999999
Q ss_pred hhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccc-cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCC
Q 017085 148 KELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN 226 (377)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~-~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~ 226 (377)
.+.+.+.... .+++.+.++++++|++ .+.||++.+++++..+.+ +.++++|+|+|++.
T Consensus 192 ~~~~~~~~~~-------------~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~-------~~~~~~l~i~G~~~- 250 (406)
T 2gek_A 192 VASFADAPLL-------------DGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVA-------RFPDVEILIVGRGD- 250 (406)
T ss_dssp HHHHHTCCCC-------------TTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHT-------TSTTCEEEEESCSC-
T ss_pred hhhcCCCchh-------------hhccCCCeEEEEEeeeCccccCHHHHHHHHHHHHH-------HCCCeEEEEEcCCc-
Confidence 8876543211 1233456899999999 999999999999997654 44799999999983
Q ss_pred cccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccce
Q 017085 227 AQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIV 304 (377)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~ 304 (377)
. +.+++.++++ .++|.|+|++ +++.++|+.||++|+||. +.|++|++++|||++|+|||+++.++..|++
T Consensus 251 ----~-~~l~~~~~~~--~~~v~~~g~~~~~~~~~~~~~adv~v~ps~-~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i 322 (406)
T 2gek_A 251 ----E-DELREQAGDL--AGHLRFLGQVDDATKASAMRSADVYCAPHL-GGESFGIVLVEAMAAGTAVVASDLDAFRRVL 322 (406)
T ss_dssp ----H-HHHHHHTGGG--GGGEEECCSCCHHHHHHHHHHSSEEEECCC-SCCSSCHHHHHHHHHTCEEEECCCHHHHHHH
T ss_pred ----H-HHHHHHHHhc--cCcEEEEecCCHHHHHHHHHHCCEEEecCC-CCCCCchHHHHHHHcCCCEEEecCCcHHHHh
Confidence 4 7788887776 6799999998 567999999999999984 2899999999999999999999999999999
Q ss_pred ecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 017085 305 VNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 373 (377)
Q Consensus 305 ~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 373 (377)
.++.+|+++++.| +++++++|.++++|++.+.++++++++.+. +|+|+.+++++.++|++++.+..
T Consensus 323 ~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~ 388 (406)
T 2gek_A 323 ADGDAGRLVPVDD--ADGMAAALIGILEDDQLRAGYVARASERVH-RYDWSVVSAQIMRVYETVSGAGI 388 (406)
T ss_dssp TTTTSSEECCTTC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GGBHHHHHHHHHHHHHHHCCTTC
T ss_pred cCCCceEEeCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhhcc
Confidence 9989999999888 999999999999999999999999999987 89999999999999999987554
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2.3e-39 Score=290.24 Aligned_cols=287 Identities=16% Similarity=0.098 Sum_probs=230.6
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc---chhHHHhhhcccEEEEcCchhhhHHHHHhhc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---GQETINTALKADLIVLNTAVAGKWLDAVLKE 78 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~ 78 (377)
+|+++|.++||+|++++........ .++.+++.. .+..++++.+||+||+|+.....+.
T Consensus 38 ~l~~~L~~~G~~v~v~~~~~~~~~~------------~~~~~~~~~~~~~l~~~l~~~~~Dvi~~~~~~~~~~~------ 99 (342)
T 2iuy_A 38 NLMDGLLELGHEVFLLGAPGSPAGR------------PGLTVVPAGEPEEIERWLRTADVDVVHDHSGGVIGPA------ 99 (342)
T ss_dssp HHHHHHHHTTCEEEEESCTTSCCCS------------TTEEECSCCSHHHHHHHHHHCCCSEEEECSSSSSCST------
T ss_pred HHHHHHHHcCCeEEEEecCCCCCCC------------CcceeccCCcHHHHHHHHHhcCCCEEEECCchhhHHH------
Confidence 5899999999999999976543221 233333322 3455667789999999987644332
Q ss_pred CCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhh
Q 017085 79 DVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNV 158 (377)
Q Consensus 79 ~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~ 158 (377)
......| +++.|+...... .+|.+++.|....+.+.+ ..++.+||||+|.+.+.+...
T Consensus 100 -~~~~~~p-v~~~h~~~~~~~---------~~d~ii~~S~~~~~~~~~---------~~~~~vi~ngvd~~~~~~~~~-- 157 (342)
T 2iuy_A 100 -GLPPGTA-FISSHHFTTRPV---------NPVGCTYSSRAQRAHCGG---------GDDAPVIPIPVDPARYRSAAD-- 157 (342)
T ss_dssp -TCCTTCE-EEEEECSSSBCS---------CCTTEEESCHHHHHHTTC---------CTTSCBCCCCBCGGGSCCSTT--
T ss_pred -HhhcCCC-EEEecCCCCCcc---------cceEEEEcCHHHHHHHhc---------CCceEEEcCCCChhhcCcccc--
Confidence 1122357 999998754321 289999999998887653 468999999999887654321
Q ss_pred hhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHH
Q 017085 159 AKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNY 238 (377)
Q Consensus 159 ~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~ 238 (377)
.. ++..+++++||+.+.||++.++++++.+ +++|+|+|+| +..+.++++
T Consensus 158 -------------~~-~~~~~i~~vG~~~~~Kg~~~li~a~~~~------------~~~l~i~G~g-----~~~~~l~~~ 206 (342)
T 2iuy_A 158 -------------QV-AKEDFLLFMGRVSPHKGALEAAAFAHAC------------GRRLVLAGPA-----WEPEYFDEI 206 (342)
T ss_dssp -------------CC-CCCSCEEEESCCCGGGTHHHHHHHHHHH------------TCCEEEESCC-----CCHHHHHHH
T ss_pred -------------cC-CCCCEEEEEeccccccCHHHHHHHHHhc------------CcEEEEEeCc-----ccHHHHHHH
Confidence 11 3456789999999999999999999854 5899999998 356778888
Q ss_pred HHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCC--------CCCccchHHHHHHHcCCcEEEeCCCCcccceec--
Q 017085 239 VMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA--------WGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN-- 306 (377)
Q Consensus 239 ~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~--------~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~-- 306 (377)
+++++ ++|+|+|++ +++.++|+.||++++||.. |.|++|++++|||++|+|||+|+.++..|++.+
T Consensus 207 ~~~~~--~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~ 284 (342)
T 2iuy_A 207 TRRYG--STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVG 284 (342)
T ss_dssp HHHHT--TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGE
T ss_pred HHHhC--CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccC
Confidence 88877 799999998 4679999999999999971 269999999999999999999999999999999
Q ss_pred CcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Q 017085 307 GTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKS 372 (377)
Q Consensus 307 ~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 372 (377)
+.+|+++++ | +++++++|.++++ ++++++.+.++|+|+.+++++.++|++++++.
T Consensus 285 ~~~g~~~~~-d--~~~l~~~i~~l~~--------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 339 (342)
T 2iuy_A 285 EVVGYGTDF-A--PDEARRTLAGLPA--------SDEVRRAAVRLWGHVTIAERYVEQYRRLLAGA 339 (342)
T ss_dssp EECCSSSCC-C--HHHHHHHHHTSCC--------HHHHHHHHHHHHBHHHHHHHHHHHHHHHHTTC
T ss_pred CCceEEcCC-C--HHHHHHHHHHHHH--------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHccC
Confidence 889999998 8 9999999999987 67788888889999999999999999998764
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=7.2e-36 Score=272.59 Aligned_cols=318 Identities=11% Similarity=0.084 Sum_probs=210.5
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhh----hc-ccC--ceEEEcc-chhHHHhhhcccEEEEcCchhhhHHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK----MW-DRG--VQVISAK-GQETINTALKADLIVLNTAVAGKWLD 73 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~----~~-~~~--~~~~~~~-~~~~~~~~~~~Div~~~~~~~~~~~~ 73 (377)
+|+++|.++||+|+|++......... ...+... +. ... ..+.... .........++|+||++....+....
T Consensus 70 ~la~~L~~~GheV~Vvt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~Dvv~a~~~~~~~~~~ 148 (413)
T 2x0d_A 70 KLFEQFDNKKFKKRIILTDATPNPKD-LQSFKSFKYVMPEEDKDFALQIVPFNDRYNRTIPVAKHDIFIATAWWTAYAAQ 148 (413)
T ss_dssp HHHTTSCTTTCEEEEEESSCCCCHHH-HGGGTTSEECCTTCCCCCSEEEEECSCCTTCCEEECTTEEEEECSHHHHHHHH
T ss_pred HHHHHHHHcCCceEEEEecCCCChHH-HHhhhccceeeccCCccccceeeeccccccccccCCCCCEEEEehHHHHHHHH
Confidence 68999999999999999764332111 1111100 00 000 1111111 11111223579999998754443333
Q ss_pred HHhhc---CCCccccceeEEeeeecccccchh-----hhccccccc--eeeeeccchhhHhhhhhhhhhhccCCCeEEEE
Q 017085 74 AVLKE---DVPRVLPNVLWWIHEMRGHYFKLD-----YVKHLPLVA--GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVH 143 (377)
Q Consensus 74 ~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~-----~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ 143 (377)
.+... .......+.++..|+..+.++... ....+...+ .++++|....+.+.+ .|++..++.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S~~~~~~l~~-----~g~~~~~~~~i~ 223 (413)
T 2x0d_A 149 RIVSWQSDTYGIPPNKILYIIQDFEPGFYQWSSQYVLAESTYKYRGPQIAVFNSELLKQYFNN-----KGYNFTDEYFFQ 223 (413)
T ss_dssp HHHHHHHHHHTCCCCCEEEEECSCGGGGSCSSHHHHHHHHTTSCCSCEEEEEESHHHHHHHHH-----HTCCCSEEEEEC
T ss_pred HhhhhhhhhcccccCcEEEEEeechhhcCccChHHHHHHHHhccCCceEEEEcCHHHHHHHHH-----cCCCCCceEEeC
Confidence 22100 000011356666776654332211 112333343 478899999888764 355556799999
Q ss_pred cCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccc-cccchhHHHHHHHHHHHHHHhhhcccCC---CeEEE
Q 017085 144 LGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQDLFLHSFYESLELIKEKKLEVP---SVHAV 219 (377)
Q Consensus 144 ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~-~~~Kg~~~ll~a~~~l~~~l~~~~~~~~---~~~l~ 219 (377)
||+|.+.+.+.. .+ .++...++++||+ .+.||++.+++|++.+.+ +.+ +++|+
T Consensus 224 ~g~d~~~~~~~~---------------~~-~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~-------~~~~~~~~~l~ 280 (413)
T 2x0d_A 224 PKINTTLKNYIN---------------DK-RQKEKIILVYGRPSVKRNAFTLIVEALKIFVQ-------KYDRSNEWKII 280 (413)
T ss_dssp CCCCHHHHTTTT---------------SC-CCCCSEEEEEECTTCGGGCHHHHHHHHHHHHH-------HCTTGGGCEEE
T ss_pred CCcCchhhcccc---------------cc-cCCCCEEEEEecCchhccCHHHHHHHHHHHHH-------hCCCCCceEEE
Confidence 999887553210 11 1345667788996 689999999999998755 224 48999
Q ss_pred EEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC
Q 017085 220 IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 220 i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
++|++... .++++.++|+|+|++ +++.++|+.||++++||. .|+||++++||||||+|||+++
T Consensus 281 ivG~~~~~------------~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~--~E~~g~~~lEAmA~G~PVV~~~- 345 (413)
T 2x0d_A 281 SVGEKHKD------------IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMI--SPHPSYPPLEMAHFGLRVITNK- 345 (413)
T ss_dssp EEESCCCC------------EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCS--SSSCCSHHHHHHHTTCEEEEEC-
T ss_pred EEcCCchh------------hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecC--CCCCCcHHHHHHhCCCcEEEeC-
Confidence 99997431 245677899999986 789999999999999999 8999999999999999999965
Q ss_pred CCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 017085 298 GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 370 (377)
Q Consensus 298 ~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 370 (377)
+|..|++.++.+|++++++| +++|+++|.++++|++++.+ ++++.+ ++|+|+.+.++ .++|+++.+
T Consensus 346 ~g~~e~v~~~~~G~lv~~~d--~~~la~ai~~ll~~~~~~~~---~~~~~~-~~~~W~~~~~~-~~~~~~l~~ 411 (413)
T 2x0d_A 346 YENKDLSNWHSNIVSLEQLN--PENIAETLVELCMSFNNRDV---DKKESS-NMMFYINEFNE-FSFIKEIEE 411 (413)
T ss_dssp BTTBCGGGTBTTEEEESSCS--HHHHHHHHHHHHHHTC----------CCB-SCGGGCCCC----TTHHHHHT
T ss_pred CCcchhhhcCCCEEEeCCCC--HHHHHHHHHHHHcCHHHHHH---hHHHHH-HhCCHHHHHHH-HHHHHHHHh
Confidence 56789999999999999988 99999999999998887766 555544 57999999888 777777654
No 16
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=2.7e-33 Score=267.71 Aligned_cols=311 Identities=12% Similarity=0.067 Sum_probs=222.2
Q ss_pred cHhhH--HHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEE-----ccchhHHHhhhcccEEEEcCchhh-hHHH
Q 017085 2 ELAFL--LRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-----AKGQETINTALKADLIVLNTAVAG-KWLD 73 (377)
Q Consensus 2 ~la~~--L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Div~~~~~~~~-~~~~ 73 (377)
+|++. |.+.||+|++++....... .... .+...+ .+.. ...+..++++.+||+||.++.... ..+.
T Consensus 226 ~l~~~L~~~~~~~~v~~~~~~~~~~~-~~~~----~~~~~~-~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~ 299 (568)
T 2vsy_A 226 ALFEALQRRQPDLQMHLFATSGDDGS-TLRT----RLAQAS-TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPE 299 (568)
T ss_dssp HHHHHHHHHCTTEEEEEEESSCCCSC-HHHH----HHHHTS-EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCH
T ss_pred HHHhhccCCcccEEEEEEECCCCCcc-HHHH----HHHhcC-eEEECCCCCHHHHHHHHHhCCCCEEEECCCCCCcchHH
Confidence 46777 7788999999996532111 1111 111122 2222 223456677889999998654321 1111
Q ss_pred HHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHH
Q 017085 74 AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEV 153 (377)
Q Consensus 74 ~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~ 153 (377)
.... . ..|++.+.|+.... .... ...+..+|.++++|..... ++ +++.+|||...+....+
T Consensus 300 ~~~~-~----~~~~~~~~~~~~~~-~~~~-~~~~~~~d~~i~~s~~~~~---------~~---~~i~~ipn~~~~~~~~~ 360 (568)
T 2vsy_A 300 VFAL-R----PAPVQVNWLAYPGT-SGAP-WMDYVLGDAFALPPALEPF---------YS---EHVLRLQGAFQPSDTSR 360 (568)
T ss_dssp HHHT-C----CSSEEEEESSSSSC-CCCT-TCCEEEECTTTSCTTTGGG---------CS---SEEEECSSCSCCCCTTC
T ss_pred HHhc-C----CCceeEeeecCCcc-cCCC-CceEEEECCCcCCcccccC---------Cc---ceeEcCCCcCCCCCCCC
Confidence 1111 1 12455555543211 1110 0111245666666664432 22 67999999544321100
Q ss_pred hhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEe-cCCCcccHHH
Q 017085 154 AEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG-SDMNAQTKFE 232 (377)
Q Consensus 154 ~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G-~~~~~~~~~~ 232 (377)
.. .+...|+++|++++.+++ ++|++.+ ||++.+++++..+.+ +.|+++|+|+| +| +..
T Consensus 361 ~~-------~~~~~r~~~~~~~~~~v~-~~g~~~~-K~~~~li~a~~~l~~-------~~~~~~l~i~G~~g-----~~~ 419 (568)
T 2vsy_A 361 VV-------AEPPSRTQCGLPEQGVVL-CCFNNSY-KLNPQSMARMLAVLR-------EVPDSVLWLLSGPG-----EAD 419 (568)
T ss_dssp CC-------CCCCCTGGGTCCTTSCEE-EECCCGG-GCCHHHHHHHHHHHH-------HCTTCEEEEECCST-----THH
T ss_pred CC-------CCCCCccccCCCCCCEEE-EeCCccc-cCCHHHHHHHHHHHH-------hCCCcEEEEecCCH-----HHH
Confidence 00 012357788997776555 8999999 999999999998765 34899999999 66 578
Q ss_pred HHHHHHHHhcCCC-CcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEE-------eCCC----
Q 017085 233 SELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG-------TAAG---- 298 (377)
Q Consensus 233 ~~l~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~-------s~~~---- 298 (377)
+.+++.++++|+. ++|+|+|++ +++..+|+.||++|+||. + |+|++++|||+||+|||+ |+.+
T Consensus 420 ~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~--~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l 496 (568)
T 2vsy_A 420 ARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHP--Y-NAHTTASDALWTGCPVLTTPGETFAARVAGSLN 496 (568)
T ss_dssp HHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSS--S-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHH
T ss_pred HHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCC--C-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHH
Confidence 8999999999998 999999998 489999999999999999 7 999999999999999999 9999
Q ss_pred ---CcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHhccc
Q 017085 299 ---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERV--KEIFQEHHMAERIAVVLKEVLKKSK 373 (377)
Q Consensus 299 ---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~~~~~~~~~~~ 373 (377)
|++|++.+ | +++++++|.++++|++.+.++++++++.+ .++|+|+.+++++.++|++++++..
T Consensus 497 ~~~g~~e~v~~----------~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~ 564 (568)
T 2vsy_A 497 HHLGLDEMNVA----------D--DAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALARRHG 564 (568)
T ss_dssp HHHTCGGGBCS----------S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHCCChhhhcC----------C--HHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99988854 4 99999999999999999999999999988 6789999999999999999987654
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=100.00 E-value=2.9e-32 Score=246.22 Aligned_cols=299 Identities=14% Similarity=0.052 Sum_probs=216.2
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc------------------------cchhHHHhhhc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------------------------KGQETINTALK 57 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 57 (377)
+|+++|+++||+|++++....... ..+...|+++... .....++++.+
T Consensus 25 ~la~~L~~~G~~V~v~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 96 (364)
T 1f0k_A 25 AVAHHLMAQGWQVRWLGTADRMEA--------DLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYK 96 (364)
T ss_dssp HHHHHHHTTTCEEEEEECTTSTHH--------HHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEEEecCCcchh--------hhccccCCceEEecCCccCcCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999997653211 1111224333221 11234456679
Q ss_pred ccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCC
Q 017085 58 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 137 (377)
Q Consensus 58 ~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 137 (377)
||+||+++.........+... ...|++.+.|+..... ......+.+|.+++.+... ++
T Consensus 97 pDvv~~~~~~~~~~~~~~~~~----~~~p~v~~~~~~~~~~---~~~~~~~~~d~v~~~~~~~-------------~~-- 154 (364)
T 1f0k_A 97 PDVVLGMGGYVSGPGGLAAWS----LGIPVVLHEQNGIAGL---TNKWLAKIATKVMQAFPGA-------------FP-- 154 (364)
T ss_dssp CSEEEECSSTTHHHHHHHHHH----TTCCEEEEECSSSCCH---HHHHHTTTCSEEEESSTTS-------------SS--
T ss_pred CCEEEEeCCcCchHHHHHHHH----cCCCEEEEecCCCCcH---HHHHHHHhCCEEEecChhh-------------cC--
Confidence 999999986533322222211 1247778888653221 2223346778888766532 12
Q ss_pred CeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCe-EEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCe
Q 017085 138 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV 216 (377)
Q Consensus 138 ~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~ 216 (377)
++.+++||++...+.... .++.++++++.+ ++++.|++.+.||.+.+++++..+. .++
T Consensus 155 ~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~----------~~~ 213 (364)
T 1f0k_A 155 NAEVVGNPVRTDVLALPL-----------PQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLG----------DSV 213 (364)
T ss_dssp SCEECCCCCCHHHHTSCC-----------HHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHG----------GGE
T ss_pred CceEeCCccchhhcccch-----------hhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhc----------CCc
Confidence 578999999987653211 135567766665 5556679999999999999998662 157
Q ss_pred E-EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 217 H-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 217 ~-l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
+ ++++|++. .+++++.+++++++ +|+|+|+++++.++|+.||++++||. |++++|||++|+|||++
T Consensus 214 ~~l~i~G~~~------~~~l~~~~~~~~~~-~v~~~g~~~~~~~~~~~ad~~v~~sg------~~~~~EAma~G~Pvi~~ 280 (364)
T 1f0k_A 214 TIWHQSGKGS------QQSVEQAYAEAGQP-QHKVTEFIDDMAAAYAWADVVVCRSG------ALTVSEIAAAGLPALFV 280 (364)
T ss_dssp EEEEECCTTC------HHHHHHHHHHTTCT-TSEEESCCSCHHHHHHHCSEEEECCC------HHHHHHHHHHTCCEEEC
T ss_pred EEEEEcCCch------HHHHHHHHhhcCCC-ceEEecchhhHHHHHHhCCEEEECCc------hHHHHHHHHhCCCEEEe
Confidence 8 56678873 36788888888874 79999999999999999999999982 99999999999999999
Q ss_pred CCCCcc--------cceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017085 296 AAGGTT--------EIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 367 (377)
Q Consensus 296 ~~~~~~--------e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 367 (377)
+.+|.+ +++.++ .|++++++|.++++++++|.++ |++.+.++++++++.+ ++|+|+.++++++++|++
T Consensus 281 ~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~ 356 (364)
T 1f0k_A 281 PFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS-IPDATERVANEVSRVARA 356 (364)
T ss_dssp CCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHTT
T ss_pred eCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhh-ccCHHHHHHHHHHHHHHH
Confidence 998764 455444 6999987654489999999998 9999999999999876 579999999999999986
Q ss_pred H
Q 017085 368 V 368 (377)
Q Consensus 368 ~ 368 (377)
.
T Consensus 357 ~ 357 (364)
T 1f0k_A 357 L 357 (364)
T ss_dssp C
T ss_pred H
Confidence 4
No 18
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=100.00 E-value=4.6e-31 Score=243.73 Aligned_cols=294 Identities=11% Similarity=0.053 Sum_probs=202.6
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc--cc-h----hhhccccccceeeeeccchhhHhhhhh
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--FK-L----DYVKHLPLVAGAMIDSHVTAEYWKNRT 128 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~--~~-~----~~~~~~~~~~~~~~~s~~~~~~~~~~~ 128 (377)
..+|+||+|+........ .++...+. .|++++.|..++.. +. . .....+-.+|.+...+......+....
T Consensus 122 ~~~DiV~vHdyhl~~l~~-~lr~~~~~--~~i~~~~H~pfp~~~~~~~lp~~~~il~~ll~~d~i~f~~~~~~~~f~~~~ 198 (482)
T 1uqt_A 122 QDDDIIWIHDYHLLPFAH-ELRKRGVN--NRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCL 198 (482)
T ss_dssp CTTCEEEEESGGGTTHHH-HHHHTTCC--SCEEEECCSCCCCHHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEECchHHHHHH-HHHHhCCC--CcEEEEEcCCCCCHHHHhhCccHHHHHHhhhccCeEEEECHHHHHHHHHHH
Confidence 357999999865433333 33322222 47899999754321 10 0 001111233444444333333222111
Q ss_pred -------------hhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHH
Q 017085 129 -------------RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 195 (377)
Q Consensus 129 -------------~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~l 195 (377)
.+.+| ...++.++|||||.+.|.+......... ...+|++++ ++++|+++||+++.||++.+
T Consensus 199 ~~~l~~~~~~~~~~~~~g-~~~~v~vip~GID~~~f~~~~~~~~~~~-~~~lr~~~~---~~~vil~VgRl~~~Kgi~~l 273 (482)
T 1uqt_A 199 SNLTRVTTRSAKSHTAWG-KAFRTEVYPIGIEPKEIAKQAAGPLPPK-LAQLKAELK---NVQNIFSVERLDYSKGLPER 273 (482)
T ss_dssp HHHSCEEEETTTEEEETT-EEEEEEECCCCCCHHHHHHHHHSCCCHH-HHHHHHHTT---TCEEEEEECCBCGGGCHHHH
T ss_pred HHHhCCccccCCeEEECC-eEEEEEEEeccCCHHHHHHHhcCcchHH-HHHHHHHhC---CCEEEEEEeCCcccCCHHHH
Confidence 11122 2357899999999998865432111111 456788886 56899999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccH----HHHHHHHHHHhcC----CC--CcEEE-ecCc--CCHHHHHH
Q 017085 196 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQKK----IQ--DRVHF-VNKT--LTVAPYLA 262 (377)
Q Consensus 196 l~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~----~~~~l~~~~~~~~----~~--~~v~~-~g~~--~~~~~~~~ 262 (377)
++|++.+.+...+. ..+++|+++|.+...+.+ +.+++++++.+++ .. ..|++ .|.. +++..+|+
T Consensus 274 l~A~~~ll~~~p~~---~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~ 350 (482)
T 1uqt_A 274 FLAYEALLEKYPQH---HGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFR 350 (482)
T ss_dssp HHHHHHHHHHCGGG---TTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCccc---cCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHH
Confidence 99999886633221 135889999974322222 3455555555432 21 13665 4554 78999999
Q ss_pred hcCEEEecCCCCCCccchHHHHHHHcCC-----cEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-CHHH
Q 017085 263 AIDVLVQNSQAWGECFGRITIEAMAFQL-----PVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVER 336 (377)
Q Consensus 263 ~adv~l~ps~~~~e~~~~~~~Ea~a~g~-----PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~ 336 (377)
.||++|+||. .||||++++||||||+ |+|+|+.+|..+.+. +|+++++.| ++++|++|.++++ ++++
T Consensus 351 ~ADv~v~pS~--~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l~---~g~lv~p~d--~~~lA~ai~~lL~~~~~~ 423 (482)
T 1uqt_A 351 YSDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYD--RDEVAAALDRALTMSLAE 423 (482)
T ss_dssp HCSEEEECCS--SBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---TSEEECTTC--HHHHHHHHHHHHTCCHHH
T ss_pred HccEEEECCC--cccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHhC---CeEEECCCC--HHHHHHHHHHHHcCCHHH
Confidence 9999999999 9999999999999997 999999888777772 789999998 9999999999998 5778
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017085 337 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 368 (377)
Q Consensus 337 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 368 (377)
+.++++++++.+.+ |||+.+++++.+.|+++
T Consensus 424 r~~~~~~~~~~v~~-~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 424 RISRHAEMLDVIVK-NDINHWQECFISDLKQI 454 (482)
T ss_dssp HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhc
Confidence 89999999998855 99999999999999876
No 19
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=100.00 E-value=2.6e-32 Score=248.30 Aligned_cols=290 Identities=11% Similarity=0.064 Sum_probs=204.2
Q ss_pred hhHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc----cch-hhhcc-ccccceeeeeccchhh
Q 017085 49 QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----FKL-DYVKH-LPLVAGAMIDSHVTAE 122 (377)
Q Consensus 49 ~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~----~~~-~~~~~-~~~~~~~~~~s~~~~~ 122 (377)
+..++++.+||+||+|+.....+...+.... ...|++.+.|+..... +.. ..... .+.+|.+++.|....+
T Consensus 78 l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~---~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 154 (384)
T 1vgv_A 78 LKPILAEFKPDVVLVHGDTTTTLATSLAAFY---QRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQ 154 (384)
T ss_dssp HHHHHHHHCCSEEEEETTCHHHHHHHHHHHT---TTCCEEEESCCCCCSCTTSSTTHHHHHHHHHTTCSEEEESSHHHHH
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHHHH---HCCCEEEEecccccccccCCCchHhhHHHHHhhccEEEcCcHHHHH
Confidence 3455677899999999752222222222111 1247788888753211 111 11222 3558999999998887
Q ss_pred HhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhC-CCC-CCeEEEEecccccc-chhHHHHHHH
Q 017085 123 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRN-EDLLFAIINSVSRG-KGQDLFLHSF 199 (377)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~-~~~~i~~~G~~~~~-Kg~~~ll~a~ 199 (377)
.+. .+|++.+++.+++||+.................+..+++.+| +++ ++++++++||+.+. ||++.+++|+
T Consensus 155 ~l~-----~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a~ 229 (384)
T 1vgv_A 155 NLL-----RENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHAL 229 (384)
T ss_dssp HHH-----HTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHH
T ss_pred HHH-----HcCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHHHHHH
Confidence 765 457777889999999533222211100000001235678888 754 45678899999876 9999999999
Q ss_pred HHHHHHHhhhcccCCCeEEEEE-ecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCC
Q 017085 200 YESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 276 (377)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~l~i~-G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e 276 (377)
..+.+ +.++++++++ |.+. ...+.+++.+.. .++|+|+|+. +++.++|+.||++|+||
T Consensus 230 ~~l~~-------~~~~~~l~i~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~~~~~~~~~~~~ad~~v~~S----- 290 (384)
T 1vgv_A 230 ADIAT-------THQDIQIVYPVHLNP----NVREPVNRILGH---VKNVILIDPQEYLPFVWLMNHAWLILTDS----- 290 (384)
T ss_dssp HHHHH-------HCTTEEEEEECCBCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHHCSEEEESS-----
T ss_pred HHHHh-------hCCCeEEEEEcCCCH----HHHHHHHHHhhc---CCCEEEeCCCCHHHHHHHHHhCcEEEECC-----
Confidence 97755 3478999886 4331 245566655432 3589997654 78999999999999998
Q ss_pred ccchHHHHHHHcCCcEEEeCC-CCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHH
Q 017085 277 CFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEH 355 (377)
Q Consensus 277 ~~~~~~~Ea~a~g~PvI~s~~-~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 355 (377)
|.+++|||++|+|||+++. ++..+++.++ +|+++++ | +++++++|.++++|++.+.+|+++++++. +.|+|+
T Consensus 291 --g~~~lEA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d--~~~la~~i~~ll~d~~~~~~~~~~~~~~~-~~~~~~ 363 (384)
T 1vgv_A 291 --GGIQEEAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGT-D--KQRIVEEVTRLLKDENEYQAMSRAHNPYG-DGQACS 363 (384)
T ss_dssp --STGGGTGGGGTCCEEEESSCCSCHHHHHHT-SEEEECS-S--HHHHHHHHHHHHHCHHHHHHHHSSCCTTC-CSCHHH
T ss_pred --cchHHHHHHcCCCEEEccCCCCcchhhhCC-ceEEeCC-C--HHHHHHHHHHHHhChHHHhhhhhccCCCc-CCCHHH
Confidence 3348999999999999986 8999999877 9999977 6 99999999999999999999999888764 679999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 017085 356 HMAERIAVVLKEVLKKS 372 (377)
Q Consensus 356 ~~~~~~~~~~~~~~~~~ 372 (377)
++++.+.++|+++.+..
T Consensus 364 ~i~~~~~~~~~~~~~~~ 380 (384)
T 1vgv_A 364 RILEALKNNRISLGSHH 380 (384)
T ss_dssp HHHHHHHHTCCCC----
T ss_pred HHHHHHHHHHHhhcccc
Confidence 99999999988876544
No 20
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=100.00 E-value=8.2e-32 Score=249.61 Aligned_cols=306 Identities=14% Similarity=0.111 Sum_probs=209.8
Q ss_pred hcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeec--------ccc--cc------h--------------hhhc
Q 017085 56 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR--------GHY--FK------L--------------DYVK 105 (377)
Q Consensus 56 ~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~--------~~~--~~------~--------------~~~~ 105 (377)
.+|||+|+|.-.++..+..+... .+ ..+.|+|+|... +.. +. . ..+.
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~-~~--~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKa 256 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKR-RI--DVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERA 256 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHT-TC--SCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHh-CC--CCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHH
Confidence 56999999987666544443322 22 358999999873 211 00 0 0112
Q ss_pred cccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhh-hhhhhhhHHHHHHH--------hCCC-C
Q 017085 106 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAED-NVAKRVLREHVRES--------LGVR-N 175 (377)
Q Consensus 106 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~-~~~~~~~~~~~r~~--------~~~~-~ 175 (377)
.+..+|.++++|..+++.... -++.+.+.+ ||||+|.+.|.+... .......|..+.+. ++++ +
T Consensus 257 ga~~AD~ITTVS~~yA~Ei~~----Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~d 330 (725)
T 3nb0_A 257 AAHSADVFTTVSQITAFEAEH----LLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLD 330 (725)
T ss_dssp HHHHSSEEEESSHHHHHHHHH----HTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGG
T ss_pred HHHhCCEEEECCHHHHHHHHH----HhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCC
Confidence 234889999999999987775 334454433 999999988765311 11111223333222 2555 3
Q ss_pred CCeEEEEecccc-ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCccc-------------------------
Q 017085 176 EDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT------------------------- 229 (377)
Q Consensus 176 ~~~~i~~~G~~~-~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~------------------------- 229 (377)
+.++++.+||+. .+||+|.+++|+.+|...|+..+.+..-+.|+|+..+...-.
T Consensus 331 k~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 410 (725)
T 3nb0_A 331 NTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIG 410 (725)
T ss_dssp GEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHh
Confidence 446666689998 789999999999999888876543334577777766422100
Q ss_pred -----------------------------------------------------------HHHHHHHHHHHhcCCCCc---
Q 017085 230 -----------------------------------------------------------KFESELRNYVMQKKIQDR--- 247 (377)
Q Consensus 230 -----------------------------------------------------------~~~~~l~~~~~~~~~~~~--- 247 (377)
...+.+...++++++.++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~d 490 (725)
T 3nb0_A 411 KRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSD 490 (725)
T ss_dssp HHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCC
Confidence 011223334455665544
Q ss_pred ---EEEecC-c--------CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecC-------c
Q 017085 248 ---VHFVNK-T--------LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNG-------T 308 (377)
Q Consensus 248 ---v~~~g~-~--------~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~-------~ 308 (377)
|+|++. . .++.++|+.||++|+||. .|+||++++||||||+|||+|+.+|+.+.+.++ .
T Consensus 491 rVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~--~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~ 568 (725)
T 3nb0_A 491 RVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSY--YEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKD 568 (725)
T ss_dssp SEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCS--SBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHH
T ss_pred ceeEEEeccccCCCCccchhHHHHHHhhceEEEeccc--cCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCC
Confidence 666652 2 368999999999999999 999999999999999999999999999998775 3
Q ss_pred ceeeecCC-CCChhHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Q 017085 309 TGLLHPVG-KEGITPLAKNIVKLAT-----HVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKKSK 373 (377)
Q Consensus 309 ~g~~~~~~-~~~~~~la~~i~~l~~-----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 373 (377)
+|+++.+. +.++++++++|.+++. ++..+..++.++++.+ ++|+|++++++|+++|++++.+..
T Consensus 569 tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A-~~FSWe~iA~~Yl~~Ye~aL~~~~ 638 (725)
T 3nb0_A 569 YGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALS-DLLDWKRMGLEYVKARQLALRRGY 638 (725)
T ss_dssp TTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGG-GGGBHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhhcc
Confidence 79888532 1126666666655553 7888889999888755 679999999999999999986543
No 21
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.97 E-value=9.2e-32 Score=245.65 Aligned_cols=238 Identities=15% Similarity=0.161 Sum_probs=182.4
Q ss_pred cccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecc-c------ccchhhhccccccceeeeeccchhhHhhhhhh
Q 017085 57 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-H------YFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 129 (377)
Q Consensus 57 ~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~-~------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 129 (377)
++|+||.+....+.+...+... ..|++.+.|+... . .........++.+|.++++|....+.+.+
T Consensus 124 ~~DvIh~~~~~~~~~~~~~~~~-----~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~--- 195 (406)
T 2hy7_A 124 ESDVIVFESGIAVAFIELAKRV-----NPAAKLVYRASDGLSTINVASYIEREFDRVAPTLDVIALVSPAMAAEVVS--- 195 (406)
T ss_dssp HCSEEEEESSGGGGGHHHHHHH-----CTTSEEEEEESSCHHHHTCCHHHHHHHHHHGGGCSEEEESCGGGGGGCSC---
T ss_pred CCCEEEECCchHHHHHHHHHHh-----CCCEEEEEeccchhhcccccHHHHHHHHHHHHhCCEEEEcCHHHHHHHHh---
Confidence 7999996655444322222222 2477888886532 1 11223345568899999999998887653
Q ss_pred hhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhh
Q 017085 130 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 209 (377)
Q Consensus 130 ~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~ 209 (377)
.+ ++.+||||+|.+.|.+.... . .++.++++|+||+.+.||+ +.++ .+
T Consensus 196 --~~----~i~vipngvd~~~f~~~~~~--------------~-~~~~~~i~~vGrl~~~Kg~---~~~l---~~----- 243 (406)
T 2hy7_A 196 --RD----NVFHVGHGVDHNLDQLGDPS--------------P-YAEGIHAVAVGSMLFDPEF---FVVA---SK----- 243 (406)
T ss_dssp --ST----TEEECCCCBCTTHHHHHCSC--------------S-CCSSEEEEEECCTTBCHHH---HHHH---HH-----
T ss_pred --cC----CEEEEcCCcChHhcCccccc--------------c-cCCCcEEEEEeccccccCH---HHHH---HH-----
Confidence 22 79999999999887643211 0 1233889999999999998 3332 22
Q ss_pred cccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHH-
Q 017085 210 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM- 286 (377)
Q Consensus 210 ~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~- 286 (377)
..++++|+|+|+|+ ++++++.++|+|+|++ +++.++|+.||++++||. .|++|++++|||
T Consensus 244 --~~~~~~l~ivG~g~-------------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~--~E~~~~~~lEAm~ 306 (406)
T 2hy7_A 244 --AFPQVTFHVIGSGM-------------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYA--SEQVPVYLADSSM 306 (406)
T ss_dssp --HCTTEEEEEESCSS-------------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBS--CSCCCTTHHHHCH
T ss_pred --hCCCeEEEEEeCch-------------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCC--cccCchHHHHHHH
Confidence 23899999999872 4567888999999997 689999999999999999 999999999999
Q ss_pred ------HcCCcEEEeCCCCcccceecCcceee-ecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 017085 287 ------AFQLPVLGTAAGGTTEIVVNGTTGLL-HPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 359 (377)
Q Consensus 287 ------a~g~PvI~s~~~~~~e~~~~~~~g~~-~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 359 (377)
|||+|||+|+. +.++.+|++ ++++| +++|+++|.++++|++ + ...++|+|+.+++
T Consensus 307 Kl~eYla~G~PVIas~~------v~~~~~G~l~v~~~d--~~~la~ai~~ll~~~~---------~-~~~~~~sw~~~a~ 368 (406)
T 2hy7_A 307 KLLQYDFFGLPAVCPNA------VVGPYKSRFGYTPGN--ADSVIAAITQALEAPR---------V-RYRQCLNWSDTTD 368 (406)
T ss_dssp HHHHHHHHTCCEEEEGG------GTCSCSSEEEECTTC--HHHHHHHHHHHHHCCC---------C-CCSCCCBHHHHHH
T ss_pred HHHHHhhCCCcEEEehh------cccCcceEEEeCCCC--HHHHHHHHHHHHhCcc---------h-hhhhcCCHHHHHH
Confidence 99999999987 556789999 99988 9999999999999876 1 2346799999999
Q ss_pred HHHHH--HHHHH
Q 017085 360 RIAVV--LKEVL 369 (377)
Q Consensus 360 ~~~~~--~~~~~ 369 (377)
++.++ |+++.
T Consensus 369 ~~~~~~~y~~~~ 380 (406)
T 2hy7_A 369 RVLDPRAYPETR 380 (406)
T ss_dssp HHHCGGGSGGGB
T ss_pred HHHHhhcccccC
Confidence 99999 87654
No 22
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.97 E-value=3.7e-31 Score=218.37 Aligned_cols=190 Identities=21% Similarity=0.280 Sum_probs=162.4
Q ss_pred EEcCChhhhHH--HhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecccc-ccchhHHHHHHHHHHH--HHHhhhcccCCCe
Q 017085 142 VHLGNSKELME--VAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS-RGKGQDLFLHSFYESL--ELIKEKKLEVPSV 216 (377)
Q Consensus 142 i~ngi~~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~-~~Kg~~~ll~a~~~l~--~~l~~~~~~~~~~ 216 (377)
||||+|.+.|. +... .....+..+|++++++++ ++|+++|++. +.||++.+++++..+. + +.+++
T Consensus 2 ipngvd~~~f~~~~~~~--~~~~~~~~~r~~~~~~~~-~~i~~~G~~~~~~K~~~~li~a~~~l~~~~-------~~~~~ 71 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTG--SRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKK-------EFQEM 71 (200)
T ss_dssp ---CCCTTTSSGGGSCS--CHHHHHHHHHHHTTCCSC-EEEEEESCBCSSSSCHHHHHHHHHHHTTSG-------GGGGE
T ss_pred CCCccChhhcccccccc--chhhHHHHHHHHcCCCCC-CEEEEeeccccccCCHHHHHHHHHHHHhhc-------cCCCe
Confidence 78999999886 4321 011225678999999754 5899999999 9999999999999764 3 33789
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEE-ecCcC--CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~-~g~~~--~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
+|+|+|.+.+ .+.+.+++.+++++ +|+| +|+++ ++.++|+.||++++||. .|++|++++|||++|+|||
T Consensus 72 ~l~i~G~~~~---~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~--~e~~~~~~~Ea~a~G~PvI 143 (200)
T 2bfw_A 72 RFIIIGKGDP---ELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSY--FEPFGLVALEAMCLGAIPI 143 (200)
T ss_dssp EEEEECCBCH---HHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCS--CCSSCHHHHHHHHTTCEEE
T ss_pred EEEEECCCCh---HHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCC--CCCccHHHHHHHHCCCCEE
Confidence 9999999731 26788899998886 8999 99984 89999999999999999 8999999999999999999
Q ss_pred EeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhcC
Q 017085 294 GTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT-HVERRLTMGKRGYERVKEIFQ 353 (377)
Q Consensus 294 ~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~f~ 353 (377)
+++.++..+++ ++.+|++++++| +++++++|.++++ |++.+.++++++++.+.+ ||
T Consensus 144 ~~~~~~~~e~~-~~~~g~~~~~~~--~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~-fs 200 (200)
T 2bfw_A 144 ASAVGGLRDII-TNETGILVKAGD--PGELANAILKALELSRSDLSKFRENCKKRAMS-FS 200 (200)
T ss_dssp EESCHHHHHHC-CTTTCEEECTTC--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred EeCCCChHHHc-CCCceEEecCCC--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999 889999999888 9999999999999 999999999999999877 75
No 23
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.97 E-value=2.3e-31 Score=241.33 Aligned_cols=277 Identities=13% Similarity=0.081 Sum_probs=195.2
Q ss_pred hhHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc----cc-hhhhccc-cccceeeeeccchhh
Q 017085 49 QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----FK-LDYVKHL-PLVAGAMIDSHVTAE 122 (377)
Q Consensus 49 ~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~----~~-~~~~~~~-~~~~~~~~~s~~~~~ 122 (377)
+..++++.+||+||+|+.....+........ ...|++.+.|+..... +. ......+ +.+|.+++.|....+
T Consensus 87 l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~---~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 163 (375)
T 3beo_A 87 LDKVMKEAKPDIVLVHGDTTTTFIASLAAFY---NQIPVGHVEAGLRTWDKYSPYPEEMNRQLTGVMADLHFSPTAKSAT 163 (375)
T ss_dssp HHHHHHHHCCSEEEEETTSHHHHHHHHHHHH---TTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHHH
T ss_pred HHHHHHHhCCCEEEEeCCchHHHHHHHHHHH---HCCCEEEEecccccccccCCChhHhhhhHHhhhhheeeCCCHHHHH
Confidence 3455677899999998763222221111111 1246666666542111 11 1112222 348999999998888
Q ss_pred HhhhhhhhhhhccCCCeEEEEcC-ChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecccccc-chhHHHHHHHH
Q 017085 123 YWKNRTRERLRIKMPDTYVVHLG-NSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG-KGQDLFLHSFY 200 (377)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~vi~ng-i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~-Kg~~~ll~a~~ 200 (377)
.+. .+|++.+++.+++|| +|...+..... .+..+++++ ++++++++++||+.+. ||++.+++|+.
T Consensus 164 ~~~-----~~g~~~~~i~vi~n~~~d~~~~~~~~~------~~~~~~~~~--~~~~~vl~~~gr~~~~~K~~~~li~a~~ 230 (375)
T 3beo_A 164 NLQ-----KENKDESRIFITGNTAIDALKTTVKET------YSHPVLEKL--GNNRLVLMTAHRRENLGEPMRNMFRAIK 230 (375)
T ss_dssp HHH-----HTTCCGGGEEECCCHHHHHHHHHCCSS------CCCHHHHTT--TTSEEEEEECCCGGGTTHHHHHHHHHHH
T ss_pred HHH-----HcCCCcccEEEECChhHhhhhhhhhhh------hhHHHHHhc--cCCCeEEEEecccccchhHHHHHHHHHH
Confidence 775 457777889999999 77665432210 012344444 3556778899999875 99999999999
Q ss_pred HHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCcc
Q 017085 201 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 278 (377)
Q Consensus 201 ~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~ 278 (377)
.+.+ +.+++++++ |.++. ..+.+.+++++ +..++|+|+|+. .++..+|+.||++++||
T Consensus 231 ~l~~-------~~~~~~~i~-~~g~~--~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s------- 290 (375)
T 3beo_A 231 RLVD-------KHEDVQVVY-PVHMN--PVVRETANDIL---GDYGRIHLIEPLDVIDFHNVAARSYLMLTDS------- 290 (375)
T ss_dssp HHHH-------HCTTEEEEE-ECCSC--HHHHHHHHHHH---TTCTTEEEECCCCHHHHHHHHHTCSEEEECC-------
T ss_pred HHHh-------hCCCeEEEE-eCCCC--HHHHHHHHHHh---hccCCEEEeCCCCHHHHHHHHHhCcEEEECC-------
Confidence 7754 347888654 55531 12334444432 333689998765 58999999999999987
Q ss_pred chHHHHHHHcCCcEEEeC-CCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHH
Q 017085 279 GRITIEAMAFQLPVLGTA-AGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHM 357 (377)
Q Consensus 279 ~~~~~Ea~a~g~PvI~s~-~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~ 357 (377)
|.+++|||++|+|||+++ .++.++++.++ +|+++++ | +++++++|.++++|++.+.+|+++++++. +.|+|+++
T Consensus 291 g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d--~~~la~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~i 365 (375)
T 3beo_A 291 GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TLKLAGT-D--EETIFSLADELLSDKEAHDKMSKASNPYG-DGRASERI 365 (375)
T ss_dssp HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SEEECCS-C--HHHHHHHHHHHHHCHHHHHHHCCCCCTTC-CSCHHHHH
T ss_pred CChHHHHHhcCCCEEEecCCCCCceeecCC-ceEEcCC-C--HHHHHHHHHHHHhChHhHhhhhhcCCCCC-CCcHHHHH
Confidence 566999999999999996 48999999877 9999975 6 99999999999999999999999888765 67999999
Q ss_pred HHHHHHHHH
Q 017085 358 AERIAVVLK 366 (377)
Q Consensus 358 ~~~~~~~~~ 366 (377)
++++.++++
T Consensus 366 ~~~~~~~~~ 374 (375)
T 3beo_A 366 VEAILKHFN 374 (375)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999988764
No 24
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.96 E-value=1.8e-28 Score=223.68 Aligned_cols=287 Identities=12% Similarity=0.052 Sum_probs=212.1
Q ss_pred cccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccc--c-------chhhhccccccceeeeeccchhhHhhhh
Q 017085 57 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--F-------KLDYVKHLPLVAGAMIDSHVTAEYWKNR 127 (377)
Q Consensus 57 ~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~--~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 127 (377)
.-|+|++|+........ .++...+. .++.+..|-.++.. | .......+-.+|.+...+...+..|.+.
T Consensus 149 ~~D~VwVhDYhL~llp~-~lR~~~~~--~~igfFlHiPfPs~e~f~~Lp~~~r~ell~gll~~DligF~t~~y~~~Fl~~ 225 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVPA-LLREQRPD--APILLFVHIPWPSADYWRILPKEIRTGILHGMLPATTIGFFADRWCRNFLES 225 (496)
T ss_dssp SSCEEEEESGGGTTHHH-HHHHHCTT--SCEEEECCSCCCCHHHHTTSCHHHHHHHHHHHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCccHhHHHH-HHHhhCCC--CeEEEEEcCCCCCHHHHhhCcHhHHHHHHHHHHhCCEEEEecHHHHHHHHHH
Confidence 46899999876554333 33333343 37888888654422 1 1222344568899999998888777665
Q ss_pred hhhhh-hccC-------------CCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhH
Q 017085 128 TRERL-RIKM-------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 193 (377)
Q Consensus 128 ~~~~~-~~~~-------------~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~ 193 (377)
..+.+ |.+. .++.++|+|||.+.|.+... ..+..+|++++ ++.+|+++||+++.||++
T Consensus 226 ~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~-----~~~~~lr~~~~---~~~lIl~VgRLd~~KGi~ 297 (496)
T 3t5t_A 226 VADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNP-----QLPEGIEEWAD---GHRLVVHSGRTDPIKNAE 297 (496)
T ss_dssp HHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----C-----CCCTTHHHHHT---TSEEEEEEEESSGGGCHH
T ss_pred HHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhH-----HHHHHHHHHhC---CceEEEEcccCccccCHH
Confidence 55444 4221 26789999999998875432 11256777776 578999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCC---CeEEEEEecCCCcccH----HHHHHHHHHHhc----CCCCcEEEecCc--CCHHHH
Q 017085 194 LFLHSFYESLELIKEKKLEVP---SVHAVIIGSDMNAQTK----FESELRNYVMQK----KIQDRVHFVNKT--LTVAPY 260 (377)
Q Consensus 194 ~ll~a~~~l~~~l~~~~~~~~---~~~l~i~G~~~~~~~~----~~~~l~~~~~~~----~~~~~v~~~g~~--~~~~~~ 260 (377)
.+++|+ ++++. +| ++.|+++|....++.+ +.+++++++.++ +.. .|+|+|.. +++..+
T Consensus 298 ~lL~Af-~ll~~-------~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~-~V~f~g~v~~~el~al 368 (496)
T 3t5t_A 298 RAVRAF-VLAAR-------GGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD-TVRIDNDNDVNHTIAC 368 (496)
T ss_dssp HHHHHH-HHHHH-------TSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT-SEEEEECCCHHHHHHH
T ss_pred HHHHHH-HHHHh-------CcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc-CEEEeCCCCHHHHHHH
Confidence 999999 87663 34 4678888754322222 344555555544 322 69999975 789999
Q ss_pred HHhcCEEEecCCCCCCccchHHHHHHHcC---CcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhC-HHH
Q 017085 261 LAAIDVLVQNSQAWGECFGRITIEAMAFQ---LPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH-VER 336 (377)
Q Consensus 261 ~~~adv~l~ps~~~~e~~~~~~~Ea~a~g---~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~-~~~ 336 (377)
|+.||++++||. .||||++.+|||||| .|+|+|..+|..+.+ +.+|+++++.| ++++|++|.+++++ +++
T Consensus 369 y~~ADv~vv~Sl--rEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l--~~~allVnP~D--~~~lA~AI~~aL~m~~~e 442 (496)
T 3t5t_A 369 FRRADLLIFNST--VDGQNLSTFEAPLVNERDADVILSETCGAAEVL--GEYCRSVNPFD--LVEQAEAISAALAAGPRQ 442 (496)
T ss_dssp HHHCSEEEECCS--SBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH--GGGSEEECTTB--HHHHHHHHHHHHHCCHHH
T ss_pred HHhccEEEECcc--cccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh--CCCEEEECCCC--HHHHHHHHHHHHcCCHHH
Confidence 999999999999 999999999999997 899999998888887 34799999998 99999999999995 577
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 017085 337 RLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 370 (377)
Q Consensus 337 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 370 (377)
++++.++.++.+ ..+++..+++.+++-+...-.
T Consensus 443 r~~r~~~~~~~V-~~~d~~~W~~~fl~~L~~~~~ 475 (496)
T 3t5t_A 443 RAEAAARRRDAA-RPWTLEAWVQAQLDGLAADHA 475 (496)
T ss_dssp HHHHHHHHHHHH-TTCBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHCCHHHHHHHHHHHHhhccc
Confidence 888888999887 559999999999988877643
No 25
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.96 E-value=3.7e-29 Score=200.01 Aligned_cols=161 Identities=13% Similarity=0.142 Sum_probs=138.0
Q ss_pred CeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--
Q 017085 177 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-- 254 (377)
Q Consensus 177 ~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-- 254 (377)
+++|+|+||+.+.||++.+++++..+. +.++++|+|+|++ +..+.++++++++++ ++.| |+.
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~--------~~~~~~l~i~G~g-----~~~~~~~~~~~~~~~--~v~~-g~~~~ 65 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK--------YKQDIVLLLKGKG-----PDEKKIKLLAQKLGV--KAEF-GFVNS 65 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT--------TGGGEEEEEECCS-----TTHHHHHHHHHHHTC--EEEC-CCCCH
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc--------cCCCeEEEEEeCC-----ccHHHHHHHHHHcCC--eEEE-eecCH
Confidence 478999999999999999999998652 2278999999998 467889999999987 7899 986
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCC-cEEE-eCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL-PVLG-TAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~-PvI~-s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+++.++|+.||++++||. .|++|++++|||++|+ |||+ ++.++..+++.++. .+++++| +++++++|.++++
T Consensus 66 ~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~--~~~~~~~--~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 66 NELLEILKTCTLYVHAAN--VESEAIACLEAISVGIVPVIANSPLSATRQFALDER--SLFEPNN--AKDLSAKIDWWLE 139 (166)
T ss_dssp HHHHHHHTTCSEEEECCC--SCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGG--GEECTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEECCc--ccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCc--eEEcCCC--HHHHHHHHHHHHh
Confidence 789999999999999999 9999999999999998 9999 56888999997654 4777777 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 017085 333 HVERRLTMGKRGYERVKEIFQEHHMAER 360 (377)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 360 (377)
|++.+.++++++++.+ ++|+|+.++++
T Consensus 140 ~~~~~~~~~~~~~~~~-~~~s~~~~~~~ 166 (166)
T 3qhp_A 140 NKLERERMQNEYAKSA-LNYTLENSVIQ 166 (166)
T ss_dssp CHHHHHHHHHHHHHHH-HHHC-------
T ss_pred CHHHHHHHHHHHHHHH-HHCChhhhhcC
Confidence 9999999999999988 78999998864
No 26
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.96 E-value=4.5e-29 Score=225.15 Aligned_cols=293 Identities=9% Similarity=0.061 Sum_probs=201.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCce--E-EEc---cchhHHHhhhcccEEEEcCchhhhHHHHH
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--V-ISA---KGQETINTALKADLIVLNTAVAGKWLDAV 75 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~---~~~~~~~~~~~~Div~~~~~~~~~~~~~~ 75 (377)
.|+++|.+.| +|.+.+..... ........ .++. . ++. ..+..+++..+||+||++.... |...+
T Consensus 58 ~L~~~L~~~~-~v~v~~~~~~~--~~~~~~~~-----~~v~~~~~~p~~~~~~l~~~l~~~~pDiv~~~~~~~--~~~~~ 127 (374)
T 2xci_A 58 PILKELKREH-RILLTYFSPRA--REYLKTKS-----DFYDCLHPLPLDNPFSVKRFEELSKPKALIVVEREF--WPSLI 127 (374)
T ss_dssp HHHHHHHHHS-CEEEEESCGGG--HHHHHTTG-----GGCSEEEECCCSSHHHHHHHHHHHCCSEEEEESCCC--CHHHH
T ss_pred HHHHHHHhcC-CEEEEEcCCcH--HHHHHHhc-----ccccceeECCCCCHHHHHHHHHHhCCCEEEEECccC--cHHHH
Confidence 5789999989 88766543211 11111111 1222 1 122 2355667788999999864221 11111
Q ss_pred hhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhh
Q 017085 76 LKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAE 155 (377)
Q Consensus 76 ~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~ 155 (377)
..... |++...+..... ..+...++.+|.+++.|+..++.+. .+|++ ++.+++|+. |....
T Consensus 128 ~~~~~-----p~~~~~~~~~~~---~~~~~~~~~~d~ii~~S~~~~~~l~-----~~g~~--ki~vi~n~~----f~~~~ 188 (374)
T 2xci_A 128 IFTKV-----PKILVNAYAKGS---LIEKILSKKFDLIIMRTQEDVEKFK-----TFGAK--RVFSCGNLK----FICQK 188 (374)
T ss_dssp HHCCS-----CEEEEEECCCCC---HHHHHHHTTCSEEEESCHHHHHHHH-----TTTCC--SEEECCCGG----GCCCC
T ss_pred HHHhC-----CEEEEEeecCch---HHHHHHHHhCCEEEECCHHHHHHHH-----HcCCC--eEEEcCCCc----cCCCc
Confidence 11111 343333322111 1344556889999999999988776 44665 899999973 11100
Q ss_pred hhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHH
Q 017085 156 DNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESEL 235 (377)
Q Consensus 156 ~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l 235 (377)
.. ++ .+ ..+++++.|+ ..||++.+++|++.+.+ +.++++|+|+|+++ ...+++
T Consensus 189 ~~----------~~--~l--~~~vi~~~~~--~~k~~~~ll~A~~~l~~-------~~p~~~lvivG~g~----~~~~~l 241 (374)
T 2xci_A 189 GK----------GI--KL--KGEFIVAGSI--HTGEVEIILKAFKEIKK-------TYSSLKLILVPRHI----ENAKIF 241 (374)
T ss_dssp CS----------CC--CC--SSCEEEEEEE--CGGGHHHHHHHHHHHHT-------TCTTCEEEEEESSG----GGHHHH
T ss_pred Ch----------hh--hh--cCCEEEEEeC--CCchHHHHHHHHHHHHh-------hCCCcEEEEECCCH----HHHHHH
Confidence 00 00 01 1245666664 46899999999997754 45899999999873 123678
Q ss_pred HHHHHhcCCC--------CcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe-CCCCcccceec
Q 017085 236 RNYVMQKKIQ--------DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVN 306 (377)
Q Consensus 236 ~~~~~~~~~~--------~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s-~~~~~~e~~~~ 306 (377)
+++++++++. ++|.+.|..+++..+|+.||++++||.. .|++|++++||||||+|||++ +.++++|++.+
T Consensus 242 ~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~-~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~ 320 (374)
T 2xci_A 242 EKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTF-VNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEF 320 (374)
T ss_dssp HHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSS-SSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHH
T ss_pred HHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcc-cCCCCcCHHHHHHhCCCEEECCCccChHHHHHH
Confidence 8999999886 4688888889999999999998887651 577899999999999999975 68899998865
Q ss_pred C-cceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCH
Q 017085 307 G-TTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQE 354 (377)
Q Consensus 307 ~-~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~ 354 (377)
. .+|++++++| +++|+++|.++++| +.+.+|++++++.+.+++..
T Consensus 321 ~~~~G~l~~~~d--~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~~~ga 366 (374)
T 2xci_A 321 LEKEGAGFEVKN--ETELVTKLTELLSV-KKEIKVEEKSREIKGCYLEK 366 (374)
T ss_dssp HHHTTCEEECCS--HHHHHHHHHHHHHS-CCCCCHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEeCC--HHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcccH
Confidence 3 5788888887 99999999999999 99999999999988775543
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.95 E-value=4.2e-27 Score=213.32 Aligned_cols=272 Identities=12% Similarity=0.027 Sum_probs=185.1
Q ss_pred hhHHHhhhcccEEEEcCchhhhHHHHH--hhcCCCccccceeEEeeeeccccc-----chhhhcc-ccccceeeeeccch
Q 017085 49 QETINTALKADLIVLNTAVAGKWLDAV--LKEDVPRVLPNVLWWIHEMRGHYF-----KLDYVKH-LPLVAGAMIDSHVT 120 (377)
Q Consensus 49 ~~~~~~~~~~Div~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~h~~~~~~~-----~~~~~~~-~~~~~~~~~~s~~~ 120 (377)
+..++++.+||+||+|+.....+.... ...+ .|++.+.++...... ....... ...++.+++.|...
T Consensus 83 l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~-----ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 157 (376)
T 1v4v_A 83 AARALKEMGADYVLVHGDTLTTFAVAWAAFLEG-----IPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLA 157 (376)
T ss_dssp HHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTT-----CCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHH
T ss_pred HHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhC-----CCEEEEeCCCccccccCCCchHHHHHHHHHHhceeeCCCHHH
Confidence 344556789999999875433232111 2222 355543333321100 0111222 24578899999888
Q ss_pred hhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHH
Q 017085 121 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 200 (377)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~ 200 (377)
.+++. ..|++.+++.+++|++......... +..+++.+ ++++++++++||+...||++.+++|++
T Consensus 158 ~~~l~-----~~g~~~~ki~vi~n~~~d~~~~~~~--------~~~~~~~~--~~~~~vl~~~gr~~~~k~~~~ll~a~~ 222 (376)
T 1v4v_A 158 KANLL-----KEGKREEGILVTGQTGVDAVLLAAK--------LGRLPEGL--PEGPYVTVTMHRRENWPLLSDLAQALK 222 (376)
T ss_dssp HHHHH-----TTTCCGGGEEECCCHHHHHHHHHHH--------HCCCCTTC--CSSCEEEECCCCGGGGGGHHHHHHHHH
T ss_pred HHHHH-----HcCCCcceEEEECCchHHHHhhhhh--------hhHHHHhc--CCCCEEEEEeCcccchHHHHHHHHHHH
Confidence 87776 4477778899999975322211111 01122233 245677788999988889999999999
Q ss_pred HHHHHHhhhcccCCCeEEEEE-ecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCc
Q 017085 201 ESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGEC 277 (377)
Q Consensus 201 ~l~~~l~~~~~~~~~~~l~i~-G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~ 277 (377)
.+.+ +.++++++++ |++. ...+.+++++.. .++|+|+|+. .++.++|+.||++|.|| +
T Consensus 223 ~l~~-------~~~~~~lv~~~g~~~----~~~~~l~~~~~~---~~~v~~~g~~g~~~~~~~~~~ad~~v~~S----~- 283 (376)
T 1v4v_A 223 RVAE-------AFPHLTFVYPVHLNP----VVREAVFPVLKG---VRNFVLLDPLEYGSMAALMRASLLLVTDS----G- 283 (376)
T ss_dssp HHHH-------HCTTSEEEEECCSCH----HHHHHHHHHHTT---CTTEEEECCCCHHHHHHHHHTEEEEEESC----H-
T ss_pred HHHh-------hCCCeEEEEECCCCH----HHHHHHHHHhcc---CCCEEEECCCCHHHHHHHHHhCcEEEECC----c-
Confidence 7754 3478888886 6551 245666666532 3589999543 38999999999999987 2
Q ss_pred cchHHHHHHHcCCcEEEe-CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHH
Q 017085 278 FGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHH 356 (377)
Q Consensus 278 ~~~~~~Ea~a~g~PvI~s-~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 356 (377)
|+ ++|||++|+|||++ +.++..+++.++ +|++++ .| +++|+++|.++++|++.+++|++++ +.|.+..
T Consensus 284 -g~-~lEA~a~G~PvI~~~~~~~~~~~~~~g-~g~lv~-~d--~~~la~~i~~ll~d~~~~~~~~~~~-----~~~~~~~ 352 (376)
T 1v4v_A 284 -GL-QEEGAALGVPVVVLRNVTERPEGLKAG-ILKLAG-TD--PEGVYRVVKGLLENPEELSRMRKAK-----NPYGDGK 352 (376)
T ss_dssp -HH-HHHHHHTTCCEEECSSSCSCHHHHHHT-SEEECC-SC--HHHHHHHHHHHHTCHHHHHHHHHSC-----CSSCCSC
T ss_pred -CH-HHHHHHcCCCEEeccCCCcchhhhcCC-ceEECC-CC--HHHHHHHHHHHHhChHhhhhhcccC-----CCCCCCh
Confidence 33 78999999999987 578888887654 899886 35 9999999999999999999888643 4577777
Q ss_pred HHHHHHHHHHHHHh
Q 017085 357 MAERIAVVLKEVLK 370 (377)
Q Consensus 357 ~~~~~~~~~~~~~~ 370 (377)
.++++.+.+.+++.
T Consensus 353 ~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 353 AGLMVARGVAWRLG 366 (376)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888888765
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.95 E-value=1.4e-27 Score=192.61 Aligned_cols=145 Identities=22% Similarity=0.297 Sum_probs=130.3
Q ss_pred hCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHH--hcCCCCcE
Q 017085 171 LGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM--QKKIQDRV 248 (377)
Q Consensus 171 ~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~--~~~~~~~v 248 (377)
+.++.++++|+|+|++.+.||++.+++++..+ ++++|+|+|.+.. .+.+++.++ +++++++|
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l-----------~~~~l~i~G~~~~-----~~~l~~~~~~~~~~l~~~v 80 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL-----------QDEKLYIVGWFSK-----GDHAERYARKIMKIAPDNV 80 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC-----------TTSCEEEEBCCCT-----TSTHHHHHHHHHHHSCTTE
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC-----------CCcEEEEEecCcc-----HHHHHHHHHhhhcccCCcE
Confidence 45667888999999999999999999999865 6799999999853 356777777 77888999
Q ss_pred EEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHH
Q 017085 249 HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKN 326 (377)
Q Consensus 249 ~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~ 326 (377)
+|+|++ +++.++|+.||++++||. .|++|++++|||++|+|||+++.++..+++.++.+|+++ +.| +++++++
T Consensus 81 ~~~g~~~~~e~~~~~~~adi~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d--~~~l~~~ 155 (177)
T 2f9f_A 81 KFLGSVSEEELIDLYSRCKGLLCTAK--DEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLV-NAD--VNEIIDA 155 (177)
T ss_dssp EEEESCCHHHHHHHHHHCSEEEECCS--SCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEE-CSC--HHHHHHH
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCC--cCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEe-CCC--HHHHHHH
Confidence 999998 459999999999999999 999999999999999999999999999999999999999 777 9999999
Q ss_pred HHHHhhCHHH
Q 017085 327 IVKLATHVER 336 (377)
Q Consensus 327 i~~l~~~~~~ 336 (377)
|.++++|++.
T Consensus 156 i~~l~~~~~~ 165 (177)
T 2f9f_A 156 MKKVSKNPDK 165 (177)
T ss_dssp HHHHHHCTTT
T ss_pred HHHHHhCHHH
Confidence 9999998875
No 29
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.90 E-value=1.5e-22 Score=183.75 Aligned_cols=278 Identities=14% Similarity=0.160 Sum_probs=181.7
Q ss_pred chhHHHhhhcccEEEEcCchhhhHHH--HHhhcCCCccccceeEEeeeecc-cc---cch-hhhcc-ccccceeeeeccc
Q 017085 48 GQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRG-HY---FKL-DYVKH-LPLVAGAMIDSHV 119 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~h~~~~-~~---~~~-~~~~~-~~~~~~~~~~s~~ 119 (377)
.+..++++.+||+|++++.....+.. ++...+ .|++...++... .+ +.. ..+.. ...++.+++.++.
T Consensus 102 ~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~-----IPv~h~~ag~rs~~~~~~~~~~~~r~~~~~~a~~~~~~se~ 176 (396)
T 3dzc_A 102 GMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQ-----IPVGHVEAGLRTGNIYSPWPEEGNRKLTAALTQYHFAPTDT 176 (396)
T ss_dssp HHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTT-----CCEEEETCCCCCSCTTSSTTHHHHHHHHHHTCSEEEESSHH
T ss_pred HHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhC-----CCEEEEECCccccccccCCcHHHHHHHHHHhcCEEECCCHH
Confidence 34556678999999999866543332 222223 355433332211 11 111 12222 2566888999998
Q ss_pred hhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhC-CCCC-CeEEEEecccc-ccchhHHHH
Q 017085 120 TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNE-DLLFAIINSVS-RGKGQDLFL 196 (377)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~-~~~i~~~G~~~-~~Kg~~~ll 196 (377)
..+++. ..|++++++.+++|++.................+..+++++| ++++ ++++++.+|.. ..|+++.++
T Consensus 177 ~~~~l~-----~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ll 251 (396)
T 3dzc_A 177 SRANLL-----QENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFERIC 251 (396)
T ss_dssp HHHHHH-----HTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHH
T ss_pred HHHHHH-----HcCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHHHHH
Confidence 888776 568888899999986533222111110000111367888999 4544 44555555543 357899999
Q ss_pred HHHHHHHHHHhhhcccCCCeEEEEE-ecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCC
Q 017085 197 HSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 273 (377)
Q Consensus 197 ~a~~~l~~~l~~~~~~~~~~~l~i~-G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~ 273 (377)
+|+..+.+ +++++++++. |.++ ...+.+++. ++..++|++.++. .++..+|+.||+++.+|
T Consensus 252 ~A~~~l~~-------~~~~~~~v~~~g~~~----~~~~~l~~~---~~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S-- 315 (396)
T 3dzc_A 252 QALITTAE-------QHPECQILYPVHLNP----NVREPVNKL---LKGVSNIVLIEPQQYLPFVYLMDRAHIILTDS-- 315 (396)
T ss_dssp HHHHHHHH-------HCTTEEEEEECCBCH----HHHHHHHHH---TTTCTTEEEECCCCHHHHHHHHHHCSEEEESC--
T ss_pred HHHHHHHH-------hCCCceEEEEeCCCh----HHHHHHHHH---HcCCCCEEEeCCCCHHHHHHHHHhcCEEEECC--
Confidence 99997755 3478998886 5441 234444443 2445689998876 57889999999999877
Q ss_pred CCCccchHHHHHHHcCCcEEEe-CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhc
Q 017085 274 WGECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 352 (377)
Q Consensus 274 ~~e~~~~~~~Ea~a~g~PvI~s-~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f 352 (377)
| | ...|||++|+|||++ +.++.++.+.+| .+++++. | .+++++++.++++|++.+.+|++++.. |
T Consensus 316 ---G-g-~~~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~-d--~~~l~~ai~~ll~d~~~~~~m~~~~~~-----~ 381 (396)
T 3dzc_A 316 ---G-G-IQEEAPSLGKPVLVMRETTERPEAVAAG-TVKLVGT-N--QQQICDALSLLLTDPQAYQAMSQAHNP-----Y 381 (396)
T ss_dssp ---S-G-GGTTGGGGTCCEEECCSSCSCHHHHHHT-SEEECTT-C--HHHHHHHHHHHHHCHHHHHHHHTSCCT-----T
T ss_pred ---c-c-HHHHHHHcCCCEEEccCCCcchHHHHcC-ceEEcCC-C--HHHHHHHHHHHHcCHHHHHHHhhccCC-----C
Confidence 1 3 338999999999999 688888888776 5677764 5 999999999999999999998876543 4
Q ss_pred CHHHHHHHHHHHH
Q 017085 353 QEHHMAERIAVVL 365 (377)
Q Consensus 353 ~~~~~~~~~~~~~ 365 (377)
.....++++.+++
T Consensus 382 ~~~~aa~ri~~~l 394 (396)
T 3dzc_A 382 GDGKACQRIADIL 394 (396)
T ss_dssp CCSCHHHHHHHHH
T ss_pred cCChHHHHHHHHH
Confidence 5555555555544
No 30
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.88 E-value=1.5e-22 Score=178.48 Aligned_cols=244 Identities=10% Similarity=0.038 Sum_probs=170.6
Q ss_pred hhcccEEEEcCchh-h-hHHHHHhhcCCCccccceeEEeeeecccccch------hhhccccccceeeeeccchhhHhhh
Q 017085 55 ALKADLIVLNTAVA-G-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSHVTAEYWKN 126 (377)
Q Consensus 55 ~~~~Div~~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~ 126 (377)
..++|+|++++|.. + .+...++.. ++....|+++.+|++++..+.. .....++.+|.+++.|+.+.+++.
T Consensus 72 ~~~~DvIi~q~P~~~~~~~~~~~~~~-lk~~~~k~i~~ihDl~pl~~~~~~~~~~~E~~~y~~aD~Ii~~S~~~~~~l~- 149 (339)
T 3rhz_A 72 LRHGDVVIFQTPTWNTTEFDEKLMNK-LKLYDIKIVLFIHDVVPLMFSGNFYLMDRTIAYYNKADVVVAPSQKMIDKLR- 149 (339)
T ss_dssp CCTTCEEEEEECCSSCHHHHHHHHHH-HTTSSCEEEEEESCCHHHHCGGGGGGHHHHHHHHTTCSEEEESCHHHHHHHH-
T ss_pred CCCCCEEEEeCCCcchhhHHHHHHHH-HHhcCCEEEEEecccHHhhCccchhhHHHHHHHHHHCCEEEECCHHHHHHHH-
Confidence 47799999998763 1 121222221 1122468999999997643321 224456899999999999998887
Q ss_pred hhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHH
Q 017085 127 RTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELI 206 (377)
Q Consensus 127 ~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l 206 (377)
..|++..++.++++. +... ..+ ...+.++++++|+|++.....++.+
T Consensus 150 ----~~G~~~~ki~~~~~~-~~~~--~~~---------------~~~~~~~~~i~yaG~l~k~~~L~~l----------- 196 (339)
T 3rhz_A 150 ----DFGMNVSKTVVQGMW-DHPT--QAP---------------MFPAGLKREIHFPGNPERFSFVKEW----------- 196 (339)
T ss_dssp ----HTTCCCSEEEECCSC-CCCC--CCC---------------CCCCEEEEEEEECSCTTTCGGGGGC-----------
T ss_pred ----HcCCCcCceeecCCC-CccC--ccc---------------ccccCCCcEEEEeCCcchhhHHHhC-----------
Confidence 457765666444332 2110 000 0112455889999999853322211
Q ss_pred hhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCC-----CCCccc
Q 017085 207 KEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA-----WGECFG 279 (377)
Q Consensus 207 ~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~-----~~e~~~ 279 (377)
.++++|+|+|+|+. . .++ +|+|+|++ +++..+++.+|+.++.... ...++|
T Consensus 197 ------~~~~~f~ivG~G~~-----~----------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P 254 (339)
T 3rhz_A 197 ------KYDIPLKVYTWQNV-----E----------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCS 254 (339)
T ss_dssp ------CCSSCEEEEESCCC-----C----------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCC
T ss_pred ------CCCCeEEEEeCCcc-----c----------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcCh
Confidence 17899999999953 1 244 89999987 8899999999988876220 013579
Q ss_pred hHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 017085 280 RITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAE 359 (377)
Q Consensus 280 ~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 359 (377)
.+++||||+|+|||+++.++.++++.++++|++++ + .++++++|..+ +++.+.+|++++++.. ++++++.+.+
T Consensus 255 ~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G~~~~--~--~~e~~~~i~~l--~~~~~~~m~~na~~~a-~~~~~~~f~k 327 (339)
T 3rhz_A 255 YKLGSFLAAGIPVIVQEGIANQELIENNGLGWIVK--D--VEEAIMKVKNV--NEDEYIELVKNVRSFN-PILRKGFFTR 327 (339)
T ss_dssp HHHHHHHHHTCCEEEETTCTTTHHHHHHTCEEEES--S--HHHHHHHHHHC--CHHHHHHHHHHHHHHT-HHHHTTHHHH
T ss_pred HHHHHHHHcCCCEEEccChhHHHHHHhCCeEEEeC--C--HHHHHHHHHHh--CHHHHHHHHHHHHHHH-HHhhccHHHH
Confidence 99999999999999999999999999999999987 3 88999999886 4677899999999865 4466666655
Q ss_pred HHH
Q 017085 360 RIA 362 (377)
Q Consensus 360 ~~~ 362 (377)
+.+
T Consensus 328 ~~l 330 (339)
T 3rhz_A 328 RLL 330 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 31
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.88 E-value=2.4e-21 Score=177.62 Aligned_cols=165 Identities=12% Similarity=0.117 Sum_probs=127.6
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
++.++++++|++. .++.+.+.+++..+.+ .++++++++++... .+.++ .++++|.+.|+.
T Consensus 241 ~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~---------~~~~~~~~~g~~~~----~~~l~------~~~~~v~~~~~~ 300 (412)
T 3otg_A 241 ARPLVYLTLGTSS-GGTVEVLRAAIDGLAG---------LDADVLVASGPSLD----VSGLG------EVPANVRLESWV 300 (412)
T ss_dssp TSCEEEEECTTTT-CSCHHHHHHHHHHHHT---------SSSEEEEECCSSCC----CTTCC------CCCTTEEEESCC
T ss_pred CCCEEEEEcCCCC-cCcHHHHHHHHHHHHc---------CCCEEEEEECCCCC----hhhhc------cCCCcEEEeCCC
Confidence 4557788889886 6777777766664432 46777777665321 11111 246799999998
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHHH
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKL 330 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l 330 (377)
++.++|+.||++|.++- +++++|||++|+|+|+...++ ..+.+.+.+.|+++++++.++++|+++|.++
T Consensus 301 -~~~~~l~~ad~~v~~~g------~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~l 373 (412)
T 3otg_A 301 -PQAALLPHVDLVVHHGG------SGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRL 373 (412)
T ss_dssp -CHHHHGGGCSEEEESCC------HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHH
T ss_pred -CHHHHHhcCcEEEECCc------hHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHH
Confidence 89999999999996653 579999999999999976543 6777777889999987632399999999999
Q ss_pred hhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017085 331 ATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 367 (377)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 367 (377)
++|++.+.++++.+++.. +.++++.+++.+++++.+
T Consensus 374 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 374 LAEESYRAGARAVAAEIA-AMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHCHHHHHHHHHHHHHHH-HSCCHHHHHTTHHHHHC-
T ss_pred HhCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhcc
Confidence 999999999999988865 558999999999988754
No 32
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.88 E-value=1.6e-20 Score=168.69 Aligned_cols=299 Identities=14% Similarity=0.042 Sum_probs=181.8
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc------------------------cchhHHHhhhc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------------------------KGQETINTALK 57 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 57 (377)
.||++|+++||+|++++...+.+.. .+...|+++... .....++++.+
T Consensus 21 ala~~L~~~g~~V~~vg~~~g~e~~--------~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (365)
T 3s2u_A 21 ACAREFQARGYAVHWLGTPRGIEND--------LVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKSLFQALRVIRQLR 92 (365)
T ss_dssp HHHHHHHHTTCEEEEEECSSSTHHH--------HTGGGTCCEEECC--------------CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCEEEEEECCchHhhc--------hhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999865432111 111223322110 01234567899
Q ss_pred ccEEEEcCchhhhHH-HHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccC
Q 017085 58 ADLIVLNTAVAGKWL-DAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKM 136 (377)
Q Consensus 58 ~Div~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 136 (377)
||+|+++....+... .++...++ |++. |+... ......+...+.++.++....... ...
T Consensus 93 PDvVi~~g~~~s~p~~laA~~~~i-----P~vi--he~n~-~~G~~nr~l~~~a~~v~~~~~~~~------------~~~ 152 (365)
T 3s2u_A 93 PVCVLGLGGYVTGPGGLAARLNGV-----PLVI--HEQNA-VAGTANRSLAPIARRVCEAFPDTF------------PAS 152 (365)
T ss_dssp CSEEEECSSSTHHHHHHHHHHTTC-----CEEE--EECSS-SCCHHHHHHGGGCSEEEESSTTSS------------CC-
T ss_pred CCEEEEcCCcchHHHHHHHHHcCC-----CEEE--Eecch-hhhhHHHhhccccceeeecccccc------------cCc
Confidence 999999986644332 22233333 5553 44311 112222223355566655443221 123
Q ss_pred CCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCe-EEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCC
Q 017085 137 PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 215 (377)
Q Consensus 137 ~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~ 215 (377)
.++.++.|++....+... +...+++++++ ++++.|++...+.-+.+.+++..+. . ..+
T Consensus 153 ~k~~~~g~pvr~~~~~~~-------------~~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~----~----~~~ 211 (365)
T 3s2u_A 153 DKRLTTGNPVRGELFLDA-------------HARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVP----L----EIR 211 (365)
T ss_dssp --CEECCCCCCGGGCCCT-------------TSSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSC----T----TTC
T ss_pred CcEEEECCCCchhhccch-------------hhhcccCCCCcEEEEECCcCCccccchhhHHHHHhcc----c----ccc
Confidence 567778888876654321 22344555554 4445577776666677777766442 1 134
Q ss_pred eEEEE-EecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEE
Q 017085 216 VHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 294 (377)
Q Consensus 216 ~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~ 294 (377)
+.+++ +|.+ ..+.+.+..++.+. ++.+.++.+++.++|+.||++|..+ .++++.|+|++|+|+|.
T Consensus 212 ~~vi~~~G~~------~~~~~~~~~~~~~~--~~~v~~f~~dm~~~l~~aDlvI~ra------G~~Tv~E~~a~G~P~Il 277 (365)
T 3s2u_A 212 PAIRHQAGRQ------HAEITAERYRTVAV--EADVAPFISDMAAAYAWADLVICRA------GALTVSELTAAGLPAFL 277 (365)
T ss_dssp CEEEEECCTT------THHHHHHHHHHTTC--CCEEESCCSCHHHHHHHCSEEEECC------CHHHHHHHHHHTCCEEE
T ss_pred eEEEEecCcc------ccccccceeccccc--ccccccchhhhhhhhccceEEEecC------CcchHHHHHHhCCCeEE
Confidence 55544 4443 34556666666654 5788899999999999999999433 37899999999999998
Q ss_pred eCCCCc--------ccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017085 295 TAAGGT--------TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 364 (377)
Q Consensus 295 s~~~~~--------~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 364 (377)
.+.+.. ++.+.+.+.|++++..+.+++.|+++|.++++|++.+++|++++++... ....+++++.++++
T Consensus 278 ip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~-~~aa~~ia~~i~~l 354 (365)
T 3s2u_A 278 VPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAK-PEATRTVVDACLEV 354 (365)
T ss_dssp CC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCC-TTHHHHHHHHHHHH
T ss_pred eccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHH
Confidence 765432 2345566688998876656899999999999999999999999987432 23444444444444
No 33
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.88 E-value=1.9e-21 Score=176.62 Aligned_cols=276 Identities=14% Similarity=0.133 Sum_probs=180.4
Q ss_pred chhHHHhhhcccEEEEcCchhhhHHH--HHhhcCCCccccceeEEeeeecc-cc---c-chhhhccc-cccceeeeeccc
Q 017085 48 GQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRG-HY---F-KLDYVKHL-PLVAGAMIDSHV 119 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~h~~~~-~~---~-~~~~~~~~-~~~~~~~~~s~~ 119 (377)
.+..++++.+||+|++++.....+.. ++...++ |++....+... .. + ....+..+ ..++.+++.++.
T Consensus 105 ~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~I-----Pv~h~~aglrs~~~~~~~p~~~~r~~~~~~a~~~~~~se~ 179 (403)
T 3ot5_A 105 GINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQK-----MLGHVEAGLRTWNKYSPFPEEMNRQLTGVMADIHFSPTKQ 179 (403)
T ss_dssp HHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTC-----EEEEESCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHH
T ss_pred HHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCC-----CEEEEECCccccccccCCcHHHHHHHHHHhcCEEECCCHH
Confidence 34556678999999999865433322 2222233 54432222211 11 1 11122223 346778888888
Q ss_pred hhhHhhhhhhhhhhccCCCeEEEEcCC-hhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccc-cchhHHHHH
Q 017085 120 TAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR-GKGQDLFLH 197 (377)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~vi~ngi-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~-~Kg~~~ll~ 197 (377)
..+++. ..|++++++.+++|+. |...+.... ..+...++++ ++++++++++||... .|+++.+++
T Consensus 180 ~~~~l~-----~~Gi~~~~i~vvGn~~~D~~~~~~~~------~~~~~~~~~l--~~~~~vlv~~~r~~~~~~~l~~ll~ 246 (403)
T 3ot5_A 180 AKENLL-----AEGKDPATIFVTGNTAIDALKTTVQK------DYHHPILENL--GDNRLILMTAHRRENLGEPMQGMFE 246 (403)
T ss_dssp HHHHHH-----HTTCCGGGEEECCCHHHHHHHHHSCT------TCCCHHHHSC--TTCEEEEECCCCHHHHTTHHHHHHH
T ss_pred HHHHHH-----HcCCCcccEEEeCCchHHHHHhhhhh------hcchHHHHhc--cCCCEEEEEeCcccccCcHHHHHHH
Confidence 888776 5688888999999864 433221110 0012345555 445566666777533 478899999
Q ss_pred HHHHHHHHHhhhcccCCCeEEEEEe-cCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCC
Q 017085 198 SFYESLELIKEKKLEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAW 274 (377)
Q Consensus 198 a~~~l~~~l~~~~~~~~~~~l~i~G-~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~ 274 (377)
++..+.+ +++++++++.+ .++ ...+.+++. ++..++|+++++. .++..+|+.||+++.+|
T Consensus 247 a~~~l~~-------~~~~~~~v~~~~~~~----~~~~~l~~~---~~~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S--- 309 (403)
T 3ot5_A 247 AVREIVE-------SREDTELVYPMHLNP----AVREKAMAI---LGGHERIHLIEPLDAIDFHNFLRKSYLVFTDS--- 309 (403)
T ss_dssp HHHHHHH-------HCTTEEEEEECCSCH----HHHHHHHHH---HTTCTTEEEECCCCHHHHHHHHHHEEEEEECC---
T ss_pred HHHHHHH-------hCCCceEEEecCCCH----HHHHHHHHH---hCCCCCEEEeCCCCHHHHHHHHHhcCEEEECC---
Confidence 9987765 34789998874 331 133444433 3344689999987 48999999999998766
Q ss_pred CCccchHHHHHHHcCCcEEEe-CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcC
Q 017085 275 GECFGRITIEAMAFQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIFQ 353 (377)
Q Consensus 275 ~e~~~~~~~Ea~a~g~PvI~s-~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~ 353 (377)
|...+||+++|+|+|++ +.++.++.+..| +|++++. | .+++++++.++++|++.+++|+.++.. |.
T Consensus 310 ----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d--~~~l~~ai~~ll~~~~~~~~m~~~~~~-----~g 376 (403)
T 3ot5_A 310 ----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGT-N--KENLIKEALDLLDNKESHDKMAQAANP-----YG 376 (403)
T ss_dssp ----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCS-C--HHHHHHHHHHHHHCHHHHHHHHHSCCT-----TC
T ss_pred ----ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCC-C--HHHHHHHHHHHHcCHHHHHHHHhhcCc-----cc
Confidence 33448999999999999 678888888655 8888875 5 999999999999999999888765543 45
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 017085 354 EHHMAERIAVVLKEVLKK 371 (377)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~ 371 (377)
....++++.+++.+.+..
T Consensus 377 ~~~aa~rI~~~l~~~l~~ 394 (403)
T 3ot5_A 377 DGFAANRILAAIKSHFEE 394 (403)
T ss_dssp CSCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHhCC
Confidence 555566666666665543
No 34
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.82 E-value=1.5e-19 Score=164.83 Aligned_cols=158 Identities=11% Similarity=0.109 Sum_probs=107.4
Q ss_pred CCCeEEEEeccccccc----------hhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC
Q 017085 175 NEDLLFAIINSVSRGK----------GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 244 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~K----------g~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 244 (377)
+..++++++|++...+ .++.+++++.. .++++++++++. ..+.+. .+
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~~~~-----~~~~l~------~~ 282 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK------------LGFEVVVAVSDK-----LAQTLQ------PL 282 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGG------------GTCEEEECCCC-------------------C
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHh------------CCCEEEEEeCCc-----chhhhc------cC
Confidence 4567788889996555 34444444432 368888888763 222222 24
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe----CCCCcccceecCcceeeecCCCCCh
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT----AAGGTTEIVVNGTTGLLHPVGKEGI 320 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s----~~~~~~e~~~~~~~g~~~~~~~~~~ 320 (377)
+++|.+.|+. ++.++|..||++|.. +.+++++|||++|+|+|+. +..+..+.+.+.+.|++++..+.+.
T Consensus 283 ~~~v~~~~~~-~~~~ll~~ad~~v~~------gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~ 355 (398)
T 4fzr_A 283 PEGVLAAGQF-PLSAIMPACDVVVHH------GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGV 355 (398)
T ss_dssp CTTEEEESCC-CHHHHGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC------
T ss_pred CCcEEEeCcC-CHHHHHhhCCEEEec------CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCH
Confidence 6799999997 689999999999943 3478999999999999995 4456777788888999998763338
Q ss_pred hHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017085 321 TPLAKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAV 363 (377)
Q Consensus 321 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 363 (377)
++++++|.++++|++.++++++.+++.. +..+++.+++.+++
T Consensus 356 ~~l~~ai~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 356 ESVLAACARIRDDSSYVGNARRLAAEMA-TLPTPADIVRLIEQ 397 (398)
T ss_dssp -CHHHHHHHHHHCTHHHHHHHHHHHHHT-TSCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHH-cCCCHHHHHHHHhc
Confidence 9999999999999999999988888754 56899888877653
No 35
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.81 E-value=1.2e-18 Score=160.63 Aligned_cols=167 Identities=15% Similarity=0.164 Sum_probs=119.4
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEE-EEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~-i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
++.++++++|++. .++.+.+..++.. +++ .++++++ ++|.+.. .+.+. .++++|.+.|+
T Consensus 231 ~~~~v~v~~Gs~~-~~~~~~~~~~~~~----l~~----~~~~~~~~~~G~~~~-----~~~l~------~~~~~v~~~~~ 290 (430)
T 2iyf_A 231 AEKVVLVSLGSAF-TKQPAFYRECVRA----FGN----LPGWHLVLQIGRKVT-----PAELG------ELPDNVEVHDW 290 (430)
T ss_dssp CSEEEEEECTTTC-C-CHHHHHHHHHH----HTT----CTTEEEEEECC---C-----GGGGC------SCCTTEEEESS
T ss_pred CCCeEEEEcCCCC-CCcHHHHHHHHHH----Hhc----CCCeEEEEEeCCCCC-----hHHhc------cCCCCeEEEec
Confidence 3457888899987 4444444443332 221 1468884 6787632 12221 24678999999
Q ss_pred cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHH
Q 017085 254 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVK 329 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~ 329 (377)
.++. ++|+.||+++..+- +++++|||++|+|+|++..++ ..+.+.+.+.|+.++.++.+.++++++|.+
T Consensus 291 ~~~~-~~l~~ad~~v~~~G------~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ 363 (430)
T 2iyf_A 291 VPQL-AILRQADLFVTHAG------AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALA 363 (430)
T ss_dssp CCHH-HHHTTCSEEEECCC------HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHH
T ss_pred CCHH-HHhhccCEEEECCC------ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHH
Confidence 8777 89999999987542 479999999999999997654 455666777899988763338999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017085 330 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVL 369 (377)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 369 (377)
+++|++.++++++.+++.. +.++++.+++.+++++.+..
T Consensus 364 ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 364 LVDDPEVARRLRRIQAEMA-QEGGTRRAADLIEAELPARH 402 (430)
T ss_dssp HHHCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHTTSCC--
T ss_pred HHcCHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHhhccc
Confidence 9999999999999888755 45899999999988876544
No 36
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.79 E-value=8.4e-19 Score=159.52 Aligned_cols=165 Identities=11% Similarity=0.109 Sum_probs=122.8
Q ss_pred CCCeEEEEeccccccchh-HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 175 NEDLLFAIINSVSRGKGQ-DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~-~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
++..++++.|+....++. ..+++++.+. + +.+++++++++++. ..+.+. ++++++++.|+
T Consensus 217 ~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~-------~~p~~~~v~~~~~~-----~~~~l~------~~~~~v~~~~~ 277 (391)
T 3tsa_A 217 SARRVCICMGRMVLNATGPAPLLRAVAAA-T-------ELPGVEAVIAVPPE-----HRALLT------DLPDNARIAES 277 (391)
T ss_dssp SSEEEEEECCHHHHHHHCSHHHHHHHHHH-H-------TSTTEEEEEECCGG-----GGGGCT------TCCTTEEECCS
T ss_pred CCCEEEEEcCCCCCcccchHHHHHHHHHh-c-------cCCCeEEEEEECCc-----chhhcc------cCCCCEEEecc
Confidence 345677778988765555 7777776654 4 44689999998863 222221 34679999999
Q ss_pred cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC----CCCcccceecCcceeeecC--CCCChhHHHHHH
Q 017085 254 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA----AGGTTEIVVNGTTGLLHPV--GKEGITPLAKNI 327 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~----~~~~~e~~~~~~~g~~~~~--~~~~~~~la~~i 327 (377)
. +..+++..||++|.. +.+++++|||++|+|+|+.. ..+..+.+.+.+.|.++++ .+.+.+++++++
T Consensus 278 ~-~~~~ll~~ad~~v~~------~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai 350 (391)
T 3tsa_A 278 V-PLNLFLRTCELVICA------GGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSI 350 (391)
T ss_dssp C-CGGGTGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHH
T ss_pred C-CHHHHHhhCCEEEeC------CCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHH
Confidence 7 456788999999943 34578999999999999954 3456667777889999987 222399999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 328 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
.++++|++.++++++.+++. .+..+++.+++.++++..
T Consensus 351 ~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 351 ATVLGDTGFAAAAIKLSDEI-TAMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHTCTHHHHHHHHHHHHH-HTSCCHHHHHHHHHHC--
T ss_pred HHHHcCHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHh
Confidence 99999999999998888775 466899888888776654
No 37
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.78 E-value=5.3e-18 Score=154.74 Aligned_cols=164 Identities=13% Similarity=0.125 Sum_probs=116.1
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEE-EecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
+...++++.|+....+. +.+..++. .+.+ .++++++ +|++.. .+.+. .+++++.+.|+
T Consensus 230 ~~~~v~v~~G~~~~~~~-~~~~~~~~----~~~~-----~~~~~~~~~g~~~~-----~~~~~------~~~~~v~~~~~ 288 (402)
T 3ia7_A 230 DAPVLLVSLGNQFNEHP-EFFRACAQ----AFAD-----TPWHVVMAIGGFLD-----PAVLG------PLPPNVEAHQW 288 (402)
T ss_dssp TCCEEEEECCSCSSCCH-HHHHHHHH----HHTT-----SSCEEEEECCTTSC-----GGGGC------SCCTTEEEESC
T ss_pred CCCEEEEECCCCCcchH-HHHHHHHH----HHhc-----CCcEEEEEeCCcCC-----hhhhC------CCCCcEEEecC
Confidence 45677888898865542 22222222 2222 3466665 454421 11111 24679999999
Q ss_pred cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC-----CCcccceecCcceeeecCCCCChhHHHHHHH
Q 017085 254 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA-----GGTTEIVVNGTTGLLHPVGKEGITPLAKNIV 328 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~-----~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~ 328 (377)
.++. ++|+.||+++..+- ..+++|||++|+|+|+... .+..+.+.+.+.|..++.++.+.+++++++.
T Consensus 289 ~~~~-~ll~~ad~~v~~~G------~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~ 361 (402)
T 3ia7_A 289 IPFH-SVLAHARACLTHGT------TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVE 361 (402)
T ss_dssp CCHH-HHHTTEEEEEECCC------HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECCC------HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHH
Confidence 8777 99999999996542 4788999999999995543 4566777778899988876334899999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017085 329 KLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 367 (377)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 367 (377)
++++|++.++++++.+.+. .+..+++.+++.+++++.+
T Consensus 362 ~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 362 RLAADSAVRERVRRMQRDI-LSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHCHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHH-hhCChHHHHHHHHHHHHhh
Confidence 9999999988888877764 4568888888888887754
No 38
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.76 E-value=1.6e-17 Score=151.34 Aligned_cols=159 Identities=17% Similarity=0.107 Sum_probs=118.0
Q ss_pred CCCeEEEEecccccc-chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 175 NEDLLFAIINSVSRG-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~-Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
+.+++++++|++... ++.+.+.+++..+.+ .++++++++++... +.+ ..++++|.+.|+
T Consensus 231 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~---------~~~~~v~~~g~~~~-----~~l------~~~~~~v~~~~~ 290 (398)
T 3oti_A 231 ARPEVAITMGTIELQAFGIGAVEPIIAAAGE---------VDADFVLALGDLDI-----SPL------GTLPRNVRAVGW 290 (398)
T ss_dssp SSCEEEECCTTTHHHHHCGGGHHHHHHHHHT---------SSSEEEEECTTSCC-----GGG------CSCCTTEEEESS
T ss_pred CCCEEEEEcCCCccccCcHHHHHHHHHHHHc---------CCCEEEEEECCcCh-----hhh------ccCCCcEEEEcc
Confidence 455778888998654 355555555443322 46899998886421 111 134679999999
Q ss_pred cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEE----eCCCCcc--cceecCcceeeecCCCCChhHHHHHH
Q 017085 254 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG----TAAGGTT--EIVVNGTTGLLHPVGKEGITPLAKNI 327 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~----s~~~~~~--e~~~~~~~g~~~~~~~~~~~~la~~i 327 (377)
. ++.++|..||++|.. +.+.++.|||++|+|+|+ .+..+.. +.+.+.+.|+.++..+.+.+.++
T Consensus 291 ~-~~~~ll~~ad~~v~~------~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~--- 360 (398)
T 3oti_A 291 T-PLHTLLRTCTAVVHH------GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR--- 360 (398)
T ss_dssp C-CHHHHHTTCSEEEEC------CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH---
T ss_pred C-CHHHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH---
Confidence 8 899999999999953 346789999999999999 5667788 88888889999876532355554
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 328 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
++++|++.++++++.+++. .+..+++.+++.++++.
T Consensus 361 -~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 361 -RLIGDESLRTAAREVREEM-VALPTPAETVRRIVERI 396 (398)
T ss_dssp -HHHHCHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHH
T ss_pred -HHHcCHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHh
Confidence 8889999999998888774 46689999998887764
No 39
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.75 E-value=9.2e-18 Score=151.04 Aligned_cols=275 Identities=10% Similarity=0.070 Sum_probs=172.7
Q ss_pred chhHHHhhhcccEEEEcCchhhhHH-HHHhhcCCCccccceeEEeeeeccc--ccch-hhhccc-cccceeeeeccchhh
Q 017085 48 GQETINTALKADLIVLNTAVAGKWL-DAVLKEDVPRVLPNVLWWIHEMRGH--YFKL-DYVKHL-PLVAGAMIDSHVTAE 122 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~h~~~~~--~~~~-~~~~~~-~~~~~~~~~s~~~~~ 122 (377)
.+..++++.+||+|++++.....+. .++...++ |++....+..+. .+.. ..+..+ ..++.+++.++...+
T Consensus 85 ~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~I-----Pv~h~eaglrs~~~~~pee~nR~~~~~~a~~~~~~te~~~~ 159 (385)
T 4hwg_A 85 KVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKI-----PIFHMEAGNRCFDQRVPEEINRKIIDHISDVNITLTEHARR 159 (385)
T ss_dssp HHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTC-----CEEEESCCCCCSCTTSTHHHHHHHHHHHCSEEEESSHHHHH
T ss_pred HHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCC-----CEEEEeCCCccccccCcHHHHHHHHHhhhceeecCCHHHHH
Confidence 3456667899999999986544343 22223333 544333333221 1111 122233 355678888888877
Q ss_pred HhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEecccc---ccchhHHHHHHH
Q 017085 123 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS---RGKGQDLFLHSF 199 (377)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~---~~Kg~~~ll~a~ 199 (377)
++. ..|++++++.++.|+.-........ ...+..+++++|+++++++++..||.. ..|+++.+++++
T Consensus 160 ~l~-----~~G~~~~~I~vtGnp~~D~~~~~~~-----~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al 229 (385)
T 4hwg_A 160 YLI-----AEGLPAELTFKSGSHMPEVLDRFMP-----KILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLNSL 229 (385)
T ss_dssp HHH-----HTTCCGGGEEECCCSHHHHHHHHHH-----HHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHHH
T ss_pred HHH-----HcCCCcCcEEEECCchHHHHHHhhh-----hcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHHH
Confidence 776 5688888999999865322211111 112456788999987777777777643 347889999999
Q ss_pred HHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhc-C-C--CCcEEEecCc--CCHHHHHHhcCEEEecCCC
Q 017085 200 YESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-K-I--QDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 273 (377)
Q Consensus 200 ~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-~-~--~~~v~~~g~~--~~~~~~~~~adv~l~ps~~ 273 (377)
..+.+ ++ ++.+++.... . +++.++++ + + .++|.+.++. .++..+|+.||+++.+|
T Consensus 230 ~~l~~-------~~-~~~vv~p~~p-----~----~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S-- 290 (385)
T 4hwg_A 230 QMLIK-------EY-NFLIIFSTHP-----R----TKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS-- 290 (385)
T ss_dssp HHHHH-------HH-CCEEEEEECH-----H----HHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC--
T ss_pred HHHHh-------cC-CeEEEEECCh-----H----HHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC--
Confidence 87754 22 5676665431 2 33444444 3 2 3589998765 46889999999999655
Q ss_pred CCCccchHHHHHHHcCCcEEEeCC-CCcccceecCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhc
Q 017085 274 WGECFGRITIEAMAFQLPVLGTAA-GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKEIF 352 (377)
Q Consensus 274 ~~e~~~~~~~Ea~a~g~PvI~s~~-~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~f 352 (377)
|....||+++|+|+|+.+. ++.+|.+..| ++.++.. | .+++++++.++++|++.+..|+.++..++.+..
T Consensus 291 -----Ggv~~EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~-d--~~~i~~ai~~ll~d~~~~~~m~~~~~~~~g~g~ 361 (385)
T 4hwg_A 291 -----GTITEEASILNLPALNIREAHERPEGMDAG-TLIMSGF-K--AERVLQAVKTITEEHDNNKRTQGLVPDYNEAGL 361 (385)
T ss_dssp -----TTHHHHHHHTTCCEEECSSSCSCTHHHHHT-CCEECCS-S--HHHHHHHHHHHHTTCBTTBCCSCCCHHHHTCCC
T ss_pred -----ccHHHHHHHcCCCEEEcCCCccchhhhhcC-ceEEcCC-C--HHHHHHHHHHHHhChHHHHHhhccCCCCCCCCh
Confidence 3457999999999999864 3466777655 6676653 4 899999999999998776666554443201223
Q ss_pred CHHHHHHHHHHHH
Q 017085 353 QEHHMAERIAVVL 365 (377)
Q Consensus 353 ~~~~~~~~~~~~~ 365 (377)
+.+++++.+.+.+
T Consensus 362 aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 362 VSKKILRIVLSYV 374 (385)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4455555444443
No 40
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.75 E-value=3.7e-17 Score=149.86 Aligned_cols=164 Identities=13% Similarity=0.102 Sum_probs=114.0
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEE-EecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
+...++++.|+.....+ + +++.+. +.+.+ .++++++ +|.+.. .+.+. .+++++.+.++
T Consensus 246 ~~~~v~v~~Gs~~~~~~-~-~~~~~~---~al~~-----~~~~~v~~~g~~~~-----~~~l~------~~~~~v~~~~~ 304 (415)
T 3rsc_A 246 DLPVVLVSLGTTFNDRP-G-FFRDCA---RAFDG-----QPWHVVMTLGGQVD-----PAALG------DLPPNVEAHRW 304 (415)
T ss_dssp CCCEEEEECTTTSCCCH-H-HHHHHH---HHHTT-----SSCEEEEECTTTSC-----GGGGC------CCCTTEEEESC
T ss_pred CCCEEEEECCCCCCChH-H-HHHHHH---HHHhc-----CCcEEEEEeCCCCC-----hHHhc------CCCCcEEEEec
Confidence 45677888898754432 2 222222 12222 2377777 454421 11111 34679999999
Q ss_pred cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe----CCCCcccceecCcceeeecCCCCChhHHHHHHHH
Q 017085 254 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT----AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 329 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s----~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~ 329 (377)
.++. ++|..||++|..+ ...+++|||++|+|+|+. +.....+.+.+.+.|..+...+.+.++++++|.+
T Consensus 305 ~~~~-~ll~~ad~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 377 (415)
T 3rsc_A 305 VPHV-KVLEQATVCVTHG------GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGA 377 (415)
T ss_dssp CCHH-HHHHHEEEEEESC------CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECC------cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHH
Confidence 8666 9999999999644 246889999999999995 4444666677777888887653348999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017085 330 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKE 367 (377)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 367 (377)
+++|++.++++++.+.+. .+...++.+++.+++++.+
T Consensus 378 ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 378 VAADPALLARVEAMRGHV-RRAGGAARAADAVEAYLAR 414 (415)
T ss_dssp HHTCHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhhc
Confidence 999999888888877764 4557888888888777653
No 41
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.71 E-value=1.6e-15 Score=137.42 Aligned_cols=159 Identities=12% Similarity=0.087 Sum_probs=115.6
Q ss_pred CCCeEEEEecccccc-------chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCc
Q 017085 175 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 247 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~-------Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (377)
+...+++++|++... +.++.+++++.. .++++++++++ ...+.+.. ++++
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~------------~~~~~~~~~g~-----~~~~~l~~------~~~~ 265 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR------------WDVELIVAAPD-----TVAEALRA------EVPQ 265 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHT------------TTCEEEEECCH-----HHHHHHHH------HCTT
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhc------------CCcEEEEEeCC-----CCHHhhCC------CCCc
Confidence 345788889998765 456666666542 36788887654 22333322 2568
Q ss_pred EEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC----cccceecCcceeeecCCCCChhHH
Q 017085 248 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPL 323 (377)
Q Consensus 248 v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~l 323 (377)
|.+ |+. +..++|..||++|..+ .+++++|||++|+|+|+....+ ..+.+.+.+.|+.++..+.+.+++
T Consensus 266 v~~-~~~-~~~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l 337 (384)
T 2p6p_A 266 ARV-GWT-PLDVVAPTCDLLVHHA------GGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAI 337 (384)
T ss_dssp SEE-ECC-CHHHHGGGCSEEEECS------CTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHH
T ss_pred eEE-cCC-CHHHHHhhCCEEEeCC------cHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHH
Confidence 999 987 5688999999999654 3568999999999999997643 566666667899887653348999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 324 AKNIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 324 a~~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
+++|.++++|++.++++++.+.+.. +.-..+.+++.++++.
T Consensus 338 ~~~i~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 338 ADSCQELQAKDTYARRAQDLSREIS-GMPLPATVVTALEQLA 378 (384)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH-TSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 9999999999998888888776643 4456666666655554
No 42
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.55 E-value=2.5e-13 Score=128.62 Aligned_cols=253 Identities=13% Similarity=0.032 Sum_probs=170.0
Q ss_pred ccceeeeeccchhhHhhhhhhh-hhhccCCCeEEEEcCChhhhH----HHhh--------------------------hh
Q 017085 109 LVAGAMIDSHVTAEYWKNRTRE-RLRIKMPDTYVVHLGNSKELM----EVAE--------------------------DN 157 (377)
Q Consensus 109 ~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~vi~ngi~~~~~----~~~~--------------------------~~ 157 (377)
.++.+-++|....+.+++.... .+..-+.++.-|-|||++..+ .|.. ..
T Consensus 413 ~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d 492 (796)
T 1l5w_A 413 GGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADD 492 (796)
T ss_dssp HSSEEEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGC
T ss_pred hcCccccccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCC
Confidence 4466777777777666542211 233345689999999988777 2211 00
Q ss_pred --------hhhhhhHHH----HHHHhCCC--CCCeEEEEeccccccchhHH-HHHHHHHHHHHHhhhcccCCCeEEEEEe
Q 017085 158 --------VAKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVIIG 222 (377)
Q Consensus 158 --------~~~~~~~~~----~r~~~~~~--~~~~~i~~~G~~~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~i~G 222 (377)
..+...|.. +++.+|++ ++.+.++++.|+..+||+++ ++..+..+.+.+.+......++++++.|
T Consensus 493 ~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~G 572 (796)
T 1l5w_A 493 AKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGA 572 (796)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEe
Confidence 112223344 46777764 56799999999999999999 8998887764433321112469999999
Q ss_pred cCCCcccHHHHHHHHHHHhc--------CCCC--cEEEecC-c-CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCC
Q 017085 223 SDMNAQTKFESELRNYVMQK--------KIQD--RVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 290 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~--------~~~~--~v~~~g~-~-~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~ 290 (377)
.+.+... ..+.+.+++... .+++ +|.|+.. . .-...++.+||++++||....|++|++-+=+|..|+
T Consensus 573 KA~P~y~-~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGa 651 (796)
T 1l5w_A 573 KAAPGYY-LAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGA 651 (796)
T ss_dssp CCCTTCH-HHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTC
T ss_pred cCChhHH-HHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCC
Confidence 9887653 344444444333 3566 7888864 3 334577899999999999889999999999999999
Q ss_pred cEEEeCCCCcccceec--CcceeeecCCCCChhHHHHHH-------HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017085 291 PVLGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKNI-------VKLATHVERRLTMGKRGYERVKEIFQEHHMAERI 361 (377)
Q Consensus 291 PvI~s~~~~~~e~~~~--~~~g~~~~~~~~~~~~la~~i-------~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 361 (377)
+.|++--|...|+.+. .+|||++.. + ++++.+.- .-.-.+++ .+++-.++ ....|||+.- .++
T Consensus 652 L~iGtLDGanvEi~e~vG~~NgF~FG~-~--~~ev~~l~~~~y~a~~~y~~~~~-~~~vvd~~---~~g~fs~~~~-~~y 723 (796)
T 1l5w_A 652 LTVGTLDGANVEIAEKVGEENIFIFGH-T--VEQVKAILAKGYDPVKWRKKDKV-LDAVLKEL---ESGKYSDGDK-HAF 723 (796)
T ss_dssp EEEECSCTTHHHHHHHHCGGGSEECSC-C--HHHHHHHHHHCCCHHHHHHHCHH-HHHHHHHH---HHTTTTTTCT-TTT
T ss_pred eeecCcCCeeeehhhccCCCcEEEecC-C--HHHHHHHHHcccCHHHHhhcCHH-HHHHHHHH---HcCCCCCCcH-HHH
Confidence 9999988888887654 469999987 3 66665322 22223553 33443333 3467999875 779
Q ss_pred HHHHHHHHh
Q 017085 362 AVVLKEVLK 370 (377)
Q Consensus 362 ~~~~~~~~~ 370 (377)
..+|..++.
T Consensus 724 ~~Ly~~L~~ 732 (796)
T 1l5w_A 724 DQMLHSIGK 732 (796)
T ss_dssp HHHHHHTST
T ss_pred HHHHHHHhc
Confidence 999988764
No 43
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.54 E-value=1.4e-13 Score=130.33 Aligned_cols=256 Identities=14% Similarity=0.078 Sum_probs=168.8
Q ss_pred ccceeeeeccchhhHhhhhhhh-hhhccCCCeEEEEcCChhhhH----HHhh---------------------------h
Q 017085 109 LVAGAMIDSHVTAEYWKNRTRE-RLRIKMPDTYVVHLGNSKELM----EVAE---------------------------D 156 (377)
Q Consensus 109 ~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~vi~ngi~~~~~----~~~~---------------------------~ 156 (377)
.++.+-++|....+.+++.... .+..-+.++.-|-|||++..+ .|.. .
T Consensus 402 ~S~~VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~ 481 (796)
T 2c4m_A 402 AAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYAD 481 (796)
T ss_dssp HCSEEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGG
T ss_pred hcCceeeccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCC
Confidence 4566777777777766643211 223345689999999987665 1210 0
Q ss_pred h--------hhhhhhHHH----HHHHhCC--CCCCeEEEEeccccccchhHH-HHHHHHHHHHHHhhhcccCCCeEEEEE
Q 017085 157 N--------VAKRVLREH----VRESLGV--RNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEKKLEVPSVHAVII 221 (377)
Q Consensus 157 ~--------~~~~~~~~~----~r~~~~~--~~~~~~i~~~G~~~~~Kg~~~-ll~a~~~l~~~l~~~~~~~~~~~l~i~ 221 (377)
. ..+...|.. +++.+|+ +++.+.++++.|+..+||+++ ++..+..+.+.+.+......++++++.
T Consensus 482 d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~ 561 (796)
T 2c4m_A 482 DKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFG 561 (796)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEE
Confidence 0 112222334 4667776 456799999999999999999 899888776433321111136999999
Q ss_pred ecCCCcccHHHHHHHHHHHhc--------CCCC--cEEEecC-c-CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcC
Q 017085 222 GSDMNAQTKFESELRNYVMQK--------KIQD--RVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ 289 (377)
Q Consensus 222 G~~~~~~~~~~~~l~~~~~~~--------~~~~--~v~~~g~-~-~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g 289 (377)
|.+.+... ..+.+.+++... .+++ +|.|+.. . +-...++.+||++++||....|++|++-+=+|..|
T Consensus 562 GKA~P~y~-~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NG 640 (796)
T 2c4m_A 562 AKAAPGYV-RAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNG 640 (796)
T ss_dssp CCCCTTCH-HHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTT
T ss_pred ecCCHhHH-HHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcC
Confidence 99887653 344444444333 4567 7888864 3 33457789999999999988999999999999999
Q ss_pred CcEEEeCCCCcccceec--CcceeeecCCCCChhHHHHH---HHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017085 290 LPVLGTAAGGTTEIVVN--GTTGLLHPVGKEGITPLAKN---IVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 364 (377)
Q Consensus 290 ~PvI~s~~~~~~e~~~~--~~~g~~~~~~~~~~~~la~~---i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 364 (377)
++.|++--|...|+.+. .+|||++.....++.++... ..-.-.+++ .+++-.++ ....|||+.- .++..+
T Consensus 641 aL~iGtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~~-~~~vvd~~---~~g~fs~~~~-~~y~~L 715 (796)
T 2c4m_A 641 ALTLGTMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYETVPG-LKRALDAL---DNGTLNDNNS-GLFYDL 715 (796)
T ss_dssp CEEEEESSTHHHHHHHHHCGGGSEEESCCTTTHHHHHHTCCHHHHHHHSTT-HHHHHHTT---TSSSSCCTTC-CHHHHH
T ss_pred CeEEeccCCeEeehhhhcCCCcEEEecCchhhHHHHHHhhChHHHhhcCHH-HHHHHHHH---HcCCCCCCCH-HHHHHH
Confidence 99999987887777654 46999998743225555543 111122332 22222222 2356898776 779999
Q ss_pred HHHHHh
Q 017085 365 LKEVLK 370 (377)
Q Consensus 365 ~~~~~~ 370 (377)
|..++.
T Consensus 716 y~~L~~ 721 (796)
T 2c4m_A 716 KHSLIH 721 (796)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 999874
No 44
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.53 E-value=2.4e-14 Score=132.84 Aligned_cols=273 Identities=10% Similarity=0.017 Sum_probs=168.1
Q ss_pred chhHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhh
Q 017085 48 GQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNR 127 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 127 (377)
.....++..++||++--+..+......+.. ..| .|+-.+.-+.. . -.-++.+|++++.....-. .
T Consensus 340 ~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa-~Rp---APVQvs~lGyp-~------TTGl~~iDY~i~D~~~~~~--~-- 404 (631)
T 3q3e_A 340 FIRSVCESNGAAIFYMPSIGMDMTTIFASN-TRL---APIQAIALGHP-A------TTHSDFIEYVIVEDDYVGS--E-- 404 (631)
T ss_dssp HHHHHHHHHTCSEEEESCCSSSHHHHHHTT-SCC---SSEEEEECSSC-S------CCCCTTCCEEEEEGGGCCC--G--
T ss_pred HHHHHHHhcCCCEEEECCCCCCchhHHHHh-CCC---chheEeccCCC-c------ccCcccCCEEEeCCCCCCc--c--
Confidence 445777889999998854432222111111 111 23322222211 1 1123567777776643211 1
Q ss_pred hhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCC--CeEEEEeccccccchhHHHHHHHHHHHHH
Q 017085 128 TRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLEL 205 (377)
Q Consensus 128 ~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~ 205 (377)
. .-.+++..+|+..-. +.+.... ..|..++++.+ .++|+.+++ ..|..+.++++|.+++++
T Consensus 405 ---~--~ysEklirLP~~~~~--~~p~~~~--------p~r~~~~lp~~~G~v~Fg~fn~--~~Ki~p~~l~~WarIL~~ 467 (631)
T 3q3e_A 405 ---E--CFSETLLRLPKDALP--YVPSALA--------PEKVDYLLRENPEVVNIGIAST--TMKLNPYFLEALKAIRDR 467 (631)
T ss_dssp ---G--GCSSEEEEECTTSSC--CCCCTTC--------CSSCCCCCCSCCSEEEEEEEEC--STTCCHHHHHHHHHHHHH
T ss_pred ---c--CceeeEEECCCCccc--cCCcccC--------CccccccCCcCCCeEEEEECCc--cccCCHHHHHHHHHHHHh
Confidence 1 123677888863211 1111100 01345677664 677877776 469999999999998773
Q ss_pred HhhhcccCCCeEEE--EEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchH
Q 017085 206 IKEKKLEVPSVHAV--IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRI 281 (377)
Q Consensus 206 l~~~~~~~~~~~l~--i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~ 281 (377)
.|+..++ ++|.+.. ....+.+.+.+.|+.+++.|.|.. .+..+.|+.+|++|.|+. + +.|++
T Consensus 468 -------vP~s~L~l~~~g~~~g----~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfp--y-~GgtT 533 (631)
T 3q3e_A 468 -------AKVKVHFHFALGQSNG----ITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFP--F-GNTNG 533 (631)
T ss_dssp -------CSSEEEEEEEESSCCG----GGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCSEEECCSS--S-CCSHH
T ss_pred -------CCCcEEEEEecCCCch----hhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCcEEEeCCc--c-cCChH
Confidence 3666654 3564321 223333445667888899999986 567788999999999985 4 55999
Q ss_pred HHHHHHcCCcEEEeCCCCccccee------cCcceeeecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--hcC
Q 017085 282 TIEAMAFQLPVLGTAAGGTTEIVV------NGTTGLLHPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQ 353 (377)
Q Consensus 282 ~~Ea~a~g~PvI~s~~~~~~e~~~------~~~~g~~~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~--~f~ 353 (377)
.+|||+||+|||+.......+.+. -|-.++++.. + .+++++...++.+|++.+.+++++.++.... -|+
T Consensus 534 tlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~-d--~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd 610 (631)
T 3q3e_A 534 IIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIAN-T--VDEYVERAVRLAENHQERLELRRYIIENNGLNTLFT 610 (631)
T ss_dssp HHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEES-S--HHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC
T ss_pred HHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecC-C--HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc
Confidence 999999999999976555544432 1223332222 2 8999999999999999999999998876433 344
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 017085 354 EHHMAERIAVVLKEVLKK 371 (377)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~ 371 (377)
...+++++.|++++.+
T Consensus 611 --~~~~~~e~~ye~~~~~ 626 (631)
T 3q3e_A 611 --GDPRPMGQVFLEKLNA 626 (631)
T ss_dssp --SCCTHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHH
Confidence 4556666666665543
No 45
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.46 E-value=1.8e-12 Score=117.99 Aligned_cols=158 Identities=10% Similarity=0.037 Sum_probs=104.7
Q ss_pred CCCeEEEEecccc-ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 175 NEDLLFAIINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~-~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
..++++++.|++. +.+....+++++.. .++++++.++..... ..+.++++.+.++
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~------------~~~~vv~~~g~~~~~------------~~~~~~~v~~~~~ 275 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRA------------QGRRVVLSSGWAGLG------------RIDEGDDCLVVGE 275 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHH------------TTCCEEEECTTTTCC------------CSSCCTTEEEESS
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHh------------CCCEEEEEeCCcccc------------cccCCCCEEEecC
Confidence 4456777889887 56666666666653 356777765532111 1234679999999
Q ss_pred cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHH
Q 017085 254 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVK 329 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~ 329 (377)
.+ ..++|..||++|..+ ...++.||+++|+|+|+....+ ..+.+.+.+.|..+...+.+.+++++++.+
T Consensus 276 ~~-~~~ll~~~d~~v~~g------G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ 348 (404)
T 3h4t_A 276 VN-HQVLFGRVAAVVHHG------GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALAT 348 (404)
T ss_dssp CC-HHHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHH
T ss_pred CC-HHHHHhhCcEEEECC------cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHH
Confidence 74 488999999999533 3478999999999999986543 233455556888877654458999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Q 017085 330 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLK 370 (377)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 370 (377)
+++ ++.++++.+.+.. +.- .-+++..+.+++++.
T Consensus 349 ll~-~~~~~~~~~~~~~-----~~~-~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 349 ALT-PGIRARAAAVAGT-----IRT-DGTTVAAKLLLEAIS 382 (404)
T ss_dssp HTS-HHHHHHHHHHHTT-----CCC-CHHHHHHHHHHHHHH
T ss_pred HhC-HHHHHHHHHHHHH-----Hhh-hHHHHHHHHHHHHHh
Confidence 998 7766655554433 322 334444444444443
No 46
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.45 E-value=5.2e-12 Score=115.86 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=108.3
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEE-EEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~-i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
+...++++.|+.. ....+.+.+++. .+.+ .+++++ ++|.+... +.+ . .+++++.+.++
T Consensus 254 ~~~~v~v~~Gs~~-~~~~~~~~~~~~----al~~-----~~~~~~~~~g~~~~~-----~~~----~--~~~~~v~~~~~ 312 (424)
T 2iya_A 254 GRPVLLIALGSAF-TDHLDFYRTCLS----AVDG-----LDWHVVLSVGRFVDP-----ADL----G--EVPPNVEVHQW 312 (424)
T ss_dssp SCCEEEEECCSSS-CCCHHHHHHHHH----HHTT-----CSSEEEEECCTTSCG-----GGG----C--SCCTTEEEESS
T ss_pred CCCEEEEEcCCCC-cchHHHHHHHHH----HHhc-----CCcEEEEEECCcCCh-----HHh----c--cCCCCeEEecC
Confidence 3457777889876 333333333333 2221 567775 46765321 111 1 24678999999
Q ss_pred cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC----CcccceecCcceeeecCCCCChhHHHHHHHH
Q 017085 254 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 329 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~----~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~ 329 (377)
..+. ++|..||++|..+ ..++++||+++|+|+|+.... ...+.+.+.+.|+.++..+.+.++++++|.+
T Consensus 313 ~~~~-~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 385 (424)
T 2iya_A 313 VPQL-DILTKASAFITHA------GMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLA 385 (424)
T ss_dssp CCHH-HHHTTCSEEEECC------CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHH
T ss_pred CCHH-HHHhhCCEEEECC------chhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHH
Confidence 8766 8999999988532 357999999999999999754 2445565667888887553338999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 330 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
+++|++.++++++.+.+. .+....+..++.+++++
T Consensus 386 ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 386 VASDPGVAERLAAVRQEI-REAGGARAAADILEGIL 420 (424)
T ss_dssp HHHCHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 999998877777766553 34455666666665554
No 47
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.42 E-value=1.9e-11 Score=111.75 Aligned_cols=158 Identities=8% Similarity=0.018 Sum_probs=109.1
Q ss_pred CCeEEEEeccc-cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEE-ecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 176 EDLLFAIINSV-SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 176 ~~~~i~~~G~~-~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~-G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
...++++.|++ .+.+..+.++++++.+ +.+++++ |.+... ...+++++.+.++
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~------------~~~~v~~~g~~~~~-------------~~~~~~~v~~~~~ 292 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAH------------GRRVILSRGWADLV-------------LPDDGADCFAIGE 292 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHT------------TCCEEECTTCTTCC-------------CSSCGGGEEECSS
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHC------------CCeEEEEeCCCccc-------------ccCCCCCEEEeCc
Confidence 35678888998 4777777787777642 3566655 654210 0234568999999
Q ss_pred cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHH
Q 017085 254 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVK 329 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~ 329 (377)
.++ .++|..||++|..+ ..++++|||++|+|+|+....+ ..+.+.+.+.|+.++..+.+.++++++|.+
T Consensus 293 ~~~-~~~l~~~d~~v~~~------G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ 365 (415)
T 1iir_A 293 VNH-QVLFGRVAAVIHHG------GAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALAT 365 (415)
T ss_dssp CCH-HHHGGGSSEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHH
T ss_pred CCh-HHHHhhCCEEEeCC------ChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHH
Confidence 865 57889999999533 3479999999999999986543 455566667888887654348999999999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Q 017085 330 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLKEVLKK 371 (377)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 371 (377)
+ +|++.++++.+.+.+ +....-++++.+.+++++..
T Consensus 366 l-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~ 401 (415)
T 1iir_A 366 A-LTPETHARATAVAGT-----IRTDGAAVAARLLLDAVSRE 401 (415)
T ss_dssp H-TSHHHHHHHHHHHHH-----SCSCHHHHHHHHHHHHHHTC
T ss_pred H-cCHHHHHHHHHHHHH-----HhhcChHHHHHHHHHHHHhc
Confidence 9 998766665554433 44455666666666666543
No 48
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.40 E-value=8e-12 Score=113.66 Aligned_cols=158 Identities=13% Similarity=0.122 Sum_probs=101.2
Q ss_pred CCCeEEEEeccccccch-hHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 175 NEDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg-~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
+...+++..|++...++ .+.+.+++. .+.+ .+..+++.+.+.+.. ....+++++.+.++
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~----~l~~-----~~~~~v~~~~~~~~~-----------~~~~~~~~v~~~~~ 295 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFS----EVAD-----VDAEFVLTLGGGDLA-----------LLGELPANVRVVEW 295 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHH----HGGG-----SSSEEEEECCTTCCC-----------CCCCCCTTEEEECC
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHH----Hhhc-----cCceEEEEecCcccc-----------ccccCCCCEEEEee
Confidence 34566777788755443 333433333 2222 567777766543221 11245789999998
Q ss_pred cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC----CcccceecCcceeeecCCCCChhHHHHHHHH
Q 017085 254 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLLHPVGKEGITPLAKNIVK 329 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~----~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~ 329 (377)
. ...++|..+|+++. .+..+++.|||++|+|+|+.... .+.+.+.+.+.|...+.. +..+++|.+
T Consensus 296 ~-p~~~lL~~~~~~v~------h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~----~~~~~al~~ 364 (400)
T 4amg_A 296 I-PLGALLETCDAIIH------HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAG----SLGAEQCRR 364 (400)
T ss_dssp C-CHHHHHTTCSEEEE------CCCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTT----TCSHHHHHH
T ss_pred c-CHHHHhhhhhheec------cCCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCC----CchHHHHHH
Confidence 7 46789999999883 33467899999999999986443 345556555677777653 456789999
Q ss_pred HhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017085 330 LATHVERRLTMGKRGYERVKEIFQEHHMAERIAVV 364 (377)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 364 (377)
+++|++.+++..+-+.+ +.+.=+....++.++++
T Consensus 365 lL~d~~~r~~a~~l~~~-~~~~~~~~~~a~~le~l 398 (400)
T 4amg_A 365 LLDDAGLREAALRVRQE-MSEMPPPAETAAXLVAL 398 (400)
T ss_dssp HHHCHHHHHHHHHHHHH-HHTSCCHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHh
Confidence 99999877665554444 44445666666666553
No 49
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.39 E-value=3.2e-12 Score=101.63 Aligned_cols=133 Identities=6% Similarity=0.037 Sum_probs=98.5
Q ss_pred CCCeEEEEecccc---ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEe
Q 017085 175 NEDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV 251 (377)
Q Consensus 175 ~~~~~i~~~G~~~---~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~ 251 (377)
+..++++++|++. +.|.+..+++++.. .++++++++++... ..++++|++.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~------------~~~~~~~~~g~~~~--------------~~~~~~v~~~ 73 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQ------------IPQKVLWRFDGNKP--------------DTLGLNTRLY 73 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTT------------SSSEEEEECCSSCC--------------TTCCTTEEEE
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHh------------CCCeEEEEECCcCc--------------ccCCCcEEEe
Confidence 3467888899985 56777777777642 24688887765311 0246789999
Q ss_pred cCcCCHHHHH--HhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC----CcccceecCcceeeecCCCCChhHHHH
Q 017085 252 NKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLLHPVGKEGITPLAK 325 (377)
Q Consensus 252 g~~~~~~~~~--~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~----~~~e~~~~~~~g~~~~~~~~~~~~la~ 325 (377)
|+..+ .+++ ..||+++..+ .+++++|||++|+|+|+.... +..+.+.+.+.|+.++..+.+.+++++
T Consensus 74 ~~~~~-~~~l~~~~ad~~I~~~------G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~ 146 (170)
T 2o6l_A 74 KWIPQ-NDLLGHPKTRAFITHG------GANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLN 146 (170)
T ss_dssp SSCCH-HHHHTSTTEEEEEECC------CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHH
T ss_pred cCCCH-HHHhcCCCcCEEEEcC------CccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHH
Confidence 99855 5667 8999999533 368999999999999999764 346667777899998876334899999
Q ss_pred HHHHHhhCHHHHHHH
Q 017085 326 NIVKLATHVERRLTM 340 (377)
Q Consensus 326 ~i~~l~~~~~~~~~~ 340 (377)
+|.++++|++.++++
T Consensus 147 ~i~~ll~~~~~~~~a 161 (170)
T 2o6l_A 147 ALKRVINDPSYKENV 161 (170)
T ss_dssp HHHHHHHCHHHHHHH
T ss_pred HHHHHHcCHHHHHHH
Confidence 999999998744433
No 50
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.35 E-value=2.3e-11 Score=115.80 Aligned_cols=252 Identities=13% Similarity=0.082 Sum_probs=163.7
Q ss_pred ccceeeeeccchhhHhhhhh-hhhhhccCCCeEEEEcCChhhhH----HHhhh---------------------------
Q 017085 109 LVAGAMIDSHVTAEYWKNRT-RERLRIKMPDTYVVHLGNSKELM----EVAED--------------------------- 156 (377)
Q Consensus 109 ~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~vi~ngi~~~~~----~~~~~--------------------------- 156 (377)
.++.+-++|....+..++.. ...+..-++++.-|-|||++..+ .+...
T Consensus 437 ~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d 516 (824)
T 2gj4_A 437 GSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDD 516 (824)
T ss_dssp TCSCEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTC
T ss_pred hcCceeeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccch
Confidence 45667777777666665332 22233446789999999976655 12110
Q ss_pred -hh------hhhhhHHH----HHHHhCCC--CCCeEEEEeccccccchhHHH-HHHHHHHHHHHhhhcccCCCeEEEEEe
Q 017085 157 -NV------AKRVLREH----VRESLGVR--NEDLLFAIINSVSRGKGQDLF-LHSFYESLELIKEKKLEVPSVHAVIIG 222 (377)
Q Consensus 157 -~~------~~~~~~~~----~r~~~~~~--~~~~~i~~~G~~~~~Kg~~~l-l~a~~~l~~~l~~~~~~~~~~~l~i~G 222 (377)
.. .+...|.. +++..|++ ++.+.++++.|+..+||++++ +..+..+.+.+.+......++++++.|
T Consensus 517 ~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~G 596 (824)
T 2gj4_A 517 EAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGG 596 (824)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEE
Confidence 00 11222333 55667764 567999999999999999997 888887654333211001168999999
Q ss_pred cCCCcccHHHHHHHHHHHhc--------CCCC--cEEEecC-c-CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCC
Q 017085 223 SDMNAQTKFESELRNYVMQK--------KIQD--RVHFVNK-T-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 290 (377)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~--------~~~~--~v~~~g~-~-~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~ 290 (377)
.+.+... ..+.+.+++.++ .+++ +|.|+.. . +-...++.+||++++||+...|++|++-+=+|..|+
T Consensus 597 KA~P~y~-~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGa 675 (824)
T 2gj4_A 597 KAAPGYH-MAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGA 675 (824)
T ss_dssp CCCTTCH-HHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTC
T ss_pred eCCHhHH-HHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCc
Confidence 9887653 333343333322 1355 6888764 3 334577899999999999889999999999999999
Q ss_pred cEEEeCCCCccccee--cCcceeeecCCCCChhHHHHHHH-------HHhh-CHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 017085 291 PVLGTAAGGTTEIVV--NGTTGLLHPVGKEGITPLAKNIV-------KLAT-HVERRLTMGKRGYERVKEIFQEHHMAER 360 (377)
Q Consensus 291 PvI~s~~~~~~e~~~--~~~~g~~~~~~~~~~~~la~~i~-------~l~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 360 (377)
+.|++--|...|+.+ ..+|||++... ++++ .++. .+.+ +++ .+++-++ .+...|+|..- ++
T Consensus 676 LtigtlDGanvEi~e~vG~~Ngf~FG~~---~~ev-~~l~~~~~~a~~~Y~~~~~-l~~v~d~---i~~g~fs~~~~-~~ 746 (824)
T 2gj4_A 676 LTIGTMDGANVEMAEEAGEENFFIFGMR---VEDV-DRLDQRGYNAQEYYDRIPE-LRQIIEQ---LSSGFFSPKQP-DL 746 (824)
T ss_dssp EEEECSCTTHHHHHHHHCGGGSEECSCC---HHHH-HHHHHHCCCHHHHHHHCHH-HHHHHHH---HHHTTTCTTST-TT
T ss_pred eEEEEecCccchhhhccCCCCEEEeCCc---HHHH-HHHHHcCCCHHHHhcCCHH-HHHHHHH---HHhCCCCCCCh-HH
Confidence 999987777767654 35689998864 4555 4432 1222 232 2333333 23467999877 77
Q ss_pred HHHHHHHHHh
Q 017085 361 IAVVLKEVLK 370 (377)
Q Consensus 361 ~~~~~~~~~~ 370 (377)
|..+|.+++.
T Consensus 747 y~~ly~~l~~ 756 (824)
T 2gj4_A 747 FKDIVNMLMH 756 (824)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8899988864
No 51
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.30 E-value=8.2e-12 Score=115.12 Aligned_cols=161 Identities=11% Similarity=0.011 Sum_probs=116.5
Q ss_pred CCCeEEEEeccccc-----cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE
Q 017085 175 NEDLLFAIINSVSR-----GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 249 (377)
Q Consensus 175 ~~~~~i~~~G~~~~-----~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~ 249 (377)
+...+++++|++.. .+.+..+++++.. .++++++++++.. .+.+. .++++|.
T Consensus 266 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~------------~~~~~v~~~g~~~-----~~~l~------~~~~~v~ 322 (441)
T 2yjn_A 266 ERRRVCLTLGISSRENSIGQVSIEELLGAVGD------------VDAEIIATFDAQQ-----LEGVA------NIPDNVR 322 (441)
T ss_dssp SSCEEEEEC----------CCSTTTTHHHHHT------------SSSEEEECCCTTT-----TSSCS------SCCSSEE
T ss_pred CCCEEEEECCCCcccccChHHHHHHHHHHHHc------------CCCEEEEEECCcc-----hhhhc------cCCCCEE
Confidence 34567888999865 3777788887752 3578888766531 11111 3467999
Q ss_pred EecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC----CcccceecCcceeeecCCCCChhHHHH
Q 017085 250 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLLHPVGKEGITPLAK 325 (377)
Q Consensus 250 ~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~----~~~e~~~~~~~g~~~~~~~~~~~~la~ 325 (377)
+.++.++ .++|..||++|.. +.++++.|||++|+|+|+.... ...+.+.+.+.|+.++..+.+.+++++
T Consensus 323 ~~~~~~~-~~ll~~ad~~V~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~ 395 (441)
T 2yjn_A 323 TVGFVPM-HALLPTCAATVHH------GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRE 395 (441)
T ss_dssp ECCSCCH-HHHGGGCSEEEEC------CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHH
T ss_pred EecCCCH-HHHHhhCCEEEEC------CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHH
Confidence 9999865 7889999999953 3367999999999999999763 355666667789988876434899999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017085 326 NIVKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVLK 366 (377)
Q Consensus 326 ~i~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 366 (377)
+|.++++|++.++++++.+.+. .+....+.+++.+++++.
T Consensus 396 ~i~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 396 SVKRVLDDPAHRAGAARMRDDM-LAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH
Confidence 9999999999888888877764 456788888877776653
No 52
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=9.2e-10 Score=106.86 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=141.7
Q ss_pred HHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC-C
Q 017085 167 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-Q 245 (377)
Q Consensus 167 ~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~-~ 245 (377)
.|+.+|++++.++|+.+.++ .|=-+.++++|.++++ +.|+.+|++..... ...+.+++.+++.|+ +
T Consensus 513 ~R~~~gLp~~~v~f~~fN~~--~Ki~p~~~~~W~~IL~-------~vP~S~L~Ll~~~~----~~~~~l~~~~~~~gi~~ 579 (723)
T 4gyw_A 513 TRSQYGLPEDAIVYCNFNQL--YKIDPSTLQMWANILK-------RVPNSVLWLLRFPA----VGEPNIQQYAQNMGLPQ 579 (723)
T ss_dssp EGGGGTCCTTSEEEECCSCG--GGCCHHHHHHHHHHHH-------HCSSEEEEEEETTG----GGHHHHHHHHHHTTCCG
T ss_pred chhhcCCCCCCEEEEeCCcc--ccCCHHHHHHHHHHHH-------hCCCCeEEEEeCcH----HHHHHHHHHHHhcCCCc
Confidence 47889999999888877754 5777889999998877 34899999887653 346778888888888 4
Q ss_pred CcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccce-----ec-CcceeeecCCC
Q 017085 246 DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIV-----VN-GTTGLLHPVGK 317 (377)
Q Consensus 246 ~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~-----~~-~~~g~~~~~~~ 317 (377)
++++|.+.. ++....+..+|++|-|. ..+.+++..||+.||+|||+-....+..-+ .. |-.-+++. +
T Consensus 580 ~r~~f~~~~~~~~~l~~~~~~Di~LDt~---p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~--~ 654 (723)
T 4gyw_A 580 NRIIFSPVAPKEEHVRRGQLADVCLDTP---LCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAK--N 654 (723)
T ss_dssp GGEEEEECCCHHHHHHHGGGCSEEECCS---SSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCS--S
T ss_pred CeEEECCCCCHHHHHHHhCCCeEEeCCC---CcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccC--C
Confidence 689999975 56677889999999876 356689999999999999986432222111 11 11112322 3
Q ss_pred CChhHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHhc
Q 017085 318 EGITPLAKNIVKLATHVERRLTMGKRGYERVKE--IFQEHHMAERIAVVLKEVLKK 371 (377)
Q Consensus 318 ~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~ 371 (377)
.++..+.-.++.+|++.+.+++..-++.... -|+...+++.+++.|+++-.+
T Consensus 655 --~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w~r 708 (723)
T 4gyw_A 655 --RQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEH 708 (723)
T ss_dssp --HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998888776654 499999999999999988653
No 53
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.83 E-value=3.2e-08 Score=90.34 Aligned_cols=156 Identities=11% Similarity=0.034 Sum_probs=103.3
Q ss_pred CCeEEEEecccc---ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEE-ecCCCcccHHHHHHHHHHHhcCCCCcEEEe
Q 017085 176 EDLLFAIINSVS---RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII-GSDMNAQTKFESELRNYVMQKKIQDRVHFV 251 (377)
Q Consensus 176 ~~~~i~~~G~~~---~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~-G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~ 251 (377)
+..++++.|++. ..+..+.++++++. .+++++++ |.+.. + . ..+++++.+.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~------------~~~~~v~~~g~~~~------~-~------~~~~~~v~~~ 291 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRA------------QGRRVILSRGWTEL------V-L------PDDRDDCFAI 291 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHH------------TTCCEEEECTTTTC------C-C------SCCCTTEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHH------------CCCeEEEEeCCccc------c-c------cCCCCCEEEe
Confidence 356777789874 34555555555542 24667665 65421 0 0 2346789999
Q ss_pred cCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC----CcccceecCcceeeecCCCCChhHHHHHH
Q 017085 252 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNGTTGLLHPVGKEGITPLAKNI 327 (377)
Q Consensus 252 g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~----~~~e~~~~~~~g~~~~~~~~~~~~la~~i 327 (377)
++.+ ..++|..||++|.. +..+++.||+++|+|+|+.... ...+.+.+.+.|..++..+.+.++++++|
T Consensus 292 ~~~~-~~~ll~~~d~~v~~------~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i 364 (416)
T 1rrv_A 292 DEVN-FQALFRRVAAVIHH------GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAAL 364 (416)
T ss_dssp SSCC-HHHHGGGSSEEEEC------CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHH
T ss_pred ccCC-hHHHhccCCEEEec------CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHH
Confidence 9975 67899999999953 3357999999999999997653 24445656678888875443489999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHh
Q 017085 328 VKLATHVERRLTMGKRGYERVKEIFQEHHMAERIAVVL-KEVLK 370 (377)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~ 370 (377)
.++ +|++.++++++.+.+ +....-. +..+.+ ++++.
T Consensus 365 ~~l-~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~i~e~~~~ 401 (416)
T 1rrv_A 365 TTV-LAPETRARAEAVAGM-----VLTDGAA-AAADLVLAAVGR 401 (416)
T ss_dssp HHH-TSHHHHHHHHHHTTT-----CCCCHHH-HHHHHHHHHHHC
T ss_pred HHh-hCHHHHHHHHHHHHH-----HhhcCcH-HHHHHHHHHHhc
Confidence 999 998877666554433 2223333 445555 55543
No 54
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.66 E-value=2.4e-06 Score=72.81 Aligned_cols=93 Identities=8% Similarity=0.068 Sum_probs=64.7
Q ss_pred eEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCH
Q 017085 178 LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV 257 (377)
Q Consensus 178 ~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~ 257 (377)
.+++++|..++..-...+++++. + ... -.++.|.+. +..+++++..++. .++.+.++.+++
T Consensus 159 ~ILv~~GG~d~~~l~~~vl~~L~-------~----~~~-i~vv~G~~~----~~~~~l~~~~~~~---~~v~v~~~~~~m 219 (282)
T 3hbm_A 159 DFFICMGGTDIKNLSLQIASELP-------K----TKI-ISIATSSSN----PNLKKLQKFAKLH---NNIRLFIDHENI 219 (282)
T ss_dssp EEEEECCSCCTTCHHHHHHHHSC-------T----TSC-EEEEECTTC----TTHHHHHHHHHTC---SSEEEEESCSCH
T ss_pred eEEEEECCCchhhHHHHHHHHhh-------c----CCC-EEEEECCCc----hHHHHHHHHHhhC---CCEEEEeCHHHH
Confidence 45566776655443334444332 1 123 335677775 3467777766643 379999999999
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++|+.||+++.+ .|.++.|++++|+|.|...
T Consensus 220 ~~~m~~aDlvI~~-------gG~T~~E~~~~g~P~i~ip 251 (282)
T 3hbm_A 220 AKLMNESNKLIIS-------ASSLVNEALLLKANFKAIC 251 (282)
T ss_dssp HHHHHTEEEEEEE-------SSHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHCCEEEEC-------CcHHHHHHHHcCCCEEEEe
Confidence 9999999999963 2579999999999999865
No 55
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.56 E-value=1.2e-05 Score=78.49 Aligned_cols=254 Identities=11% Similarity=0.085 Sum_probs=141.3
Q ss_pred cCceEEEccchhHHHhhhcccEEEEcCchhhhHHHHHhhcCCCccccceeEEeeeecccccc-----------------h
Q 017085 39 RGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-----------------L 101 (377)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-----------------~ 101 (377)
.+++++...+...+......++++.++..+..+ .+.....++.+.|+..-..+. .
T Consensus 399 ~~~~~v~~~s~~~~~~l~~a~~~v~n~~~~~~~--------~k~~~~~~iq~wHG~~lK~~g~d~~~~~~~~~~~~~~~~ 470 (729)
T 3l7i_A 399 GSAEKVKRNSAEYYQAYSEASHWVSNARTPLYL--------NKKENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKR 470 (729)
T ss_dssp SSCEEEETTSHHHHHHHHHEEEEEESSCCCTTS--------CCCTTCEEEECCSSCCSBCCGGGCSCCCCTTCCHHHHHH
T ss_pred CCcEEEEECCHHHHHHHhcCcEEEECCCCcccc--------ccCCCcEEEECCCCCchhhccccccccccccccCHHHHH
Confidence 355555555555444455566777665443311 112234677788876211111 0
Q ss_pred hhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEE
Q 017085 102 DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA 181 (377)
Q Consensus 102 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~ 181 (377)
.+......+|.+++.|....+.+.+ .++++.. .++..|.+....-... ......++.+++.+++++++.+|+
T Consensus 471 ~~~~~~~~~D~~~~~s~~~~~~~~~----~f~~~~~--~i~~~G~PR~D~l~~~--~~~~~~~~~~~~~~~~~~~kk~IL 542 (729)
T 3l7i_A 471 NFNRETSRWDYLISPNRYSTEIFRS----AFWMDEE--RILEIGYPRNDVLVNR--ANDQEYLDEIRTHLNLPSDKKVIM 542 (729)
T ss_dssp HHHHHHTTCSEEEESSHHHHHHHHH----HTCCCGG--GEEESCCGGGHHHHHS--TTCHHHHHHHHHHTTCCSSCEEEE
T ss_pred HHHHhhccCCEEEeCCHHHHHHHHH----HhCCCcc--eEEEcCCCchHHHhcc--cchHHHHHHHHHHhCCCCCCeEEE
Confidence 1112235679999999988877765 5666544 4556666543222111 111233567899999999999999
Q ss_pred Eeccccccc----h-----hHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 182 IINSVSRGK----G-----QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 182 ~~G~~~~~K----g-----~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
|+-.+.... | ...-++.+. +.|. .++.+++-.. +... ......+..+.+....
T Consensus 543 yaPT~r~~~~~~~~~~~~~~~~~~~~l~---~~l~------~~~~li~r~H------p~~~---~~~~~~~~~~~~~~~~ 604 (729)
T 3l7i_A 543 YAPTWRDDEFVSKGKYLFELKIDLDNLY---KELG------DDYVILLRMH------YLIS---NALDLSGYENFAIDVS 604 (729)
T ss_dssp ECCCCCGGGCCGGGSSCCCCTTCHHHHH---HHHT------TTEEEEECCC------HHHH---TTCCCTTCTTTEEECT
T ss_pred EeeeeeCCccccccccccchhhHHHHHH---HHcC------CCeEEEEecC------cchh---ccccccccCCcEEeCC
Confidence 998775531 1 111223332 2332 5677666554 2211 1111123345566555
Q ss_pred CcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceeeecCCC-------CChhHHHH
Q 017085 253 KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLLHPVGK-------EGITPLAK 325 (377)
Q Consensus 253 ~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~~~~~~-------~~~~~la~ 325 (377)
...++.++|..||+++.= ++-+++|++..++|||.... ...++.. ...|+.++..+ .+.++|.+
T Consensus 605 ~~~di~~ll~~aD~lITD-------ySSv~fD~~~l~kPiif~~~-D~~~Y~~-~~rg~y~d~~~~~pg~~~~~~~eL~~ 675 (729)
T 3l7i_A 605 NYNDVSELFLISDCLITD-------YSSVMFDYGILKRPQFFFAY-DIDKYDK-GLRGFYMNYMEDLPGPIYTEPYGLAK 675 (729)
T ss_dssp TCSCHHHHHHTCSEEEES-------SCTHHHHHGGGCCCEEEECT-TTTTTTS-SCCSBSSCTTSSSSSCEESSHHHHHH
T ss_pred CCcCHHHHHHHhCEEEee-------chHHHHhHHhhCCCEEEecC-CHHHHhh-ccCCcccChhHhCCCCeECCHHHHHH
Confidence 557899999999999832 35589999999999997731 1222221 11333332211 12788999
Q ss_pred HHHHHhhCHH
Q 017085 326 NIVKLATHVE 335 (377)
Q Consensus 326 ~i~~l~~~~~ 335 (377)
+|.......+
T Consensus 676 ~i~~~~~~~~ 685 (729)
T 3l7i_A 676 ELKNLDKVQQ 685 (729)
T ss_dssp HHTTHHHHHH
T ss_pred HHhhhhccch
Confidence 8887765433
No 56
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=98.24 E-value=5.6e-05 Score=72.22 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=104.1
Q ss_pred CCCeEEEEeccccccchhHH-HHHHHHHHHHHHhh------hccc---CCCeEEEEEecCCCcccHHHHHHHHHHHhc--
Q 017085 175 NEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKE------KKLE---VPSVHAVIIGSDMNAQTKFESELRNYVMQK-- 242 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~-ll~a~~~l~~~l~~------~~~~---~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-- 242 (377)
++.+..+++-|+...|+..+ ++..+..+.+.+.+ .... ..+.++++.|...|.. ...+.+.+++...
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y-~~aK~iIklI~~va~ 676 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGY-YMAKLIIKLINCVAD 676 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTC-HHHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCc-HHHHHHHHHHHHHHH
Confidence 56899999999999999999 67777755433322 1000 2468888889877665 3455565555443
Q ss_pred ------CCCC--cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec--Ccce
Q 017085 243 ------KIQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN--GTTG 310 (377)
Q Consensus 243 ------~~~~--~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~--~~~g 310 (377)
.+.+ +|.|+..- .-...++.+|||....|....|.+|++-+-+|.-|.+.|++--|...|+.++ .+|+
T Consensus 677 ~iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~ 756 (879)
T 1ygp_A 677 IVNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNV 756 (879)
T ss_dssp HHTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGS
T ss_pred HhccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccE
Confidence 2445 78988863 4455778999999998887899999999999999999999988888888755 4577
Q ss_pred eeecC
Q 017085 311 LLHPV 315 (377)
Q Consensus 311 ~~~~~ 315 (377)
|++-.
T Consensus 757 fiFG~ 761 (879)
T 1ygp_A 757 FLFGN 761 (879)
T ss_dssp EEESC
T ss_pred EEccC
Confidence 77754
No 57
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.05 E-value=1.1e-05 Score=74.20 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=69.4
Q ss_pred CCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC----CcccceecC-cceeeecCCC
Q 017085 245 QDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNG-TTGLLHPVGK 317 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~----~~~e~~~~~-~~g~~~~~~~ 317 (377)
++++.+.++..+. ++|. ++|++| .-+..+++.||+++|+|+|+-... .....+.+. +.|..++.++
T Consensus 324 ~~~~~v~~w~pq~-~vL~h~~~~~fv------th~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~ 396 (456)
T 2c1x_A 324 RGYGMVVPWAPQA-EVLAHEAVGAFV------THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGV 396 (456)
T ss_dssp TTTEEEESCCCHH-HHHTSTTEEEEE------ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGS
T ss_pred CCceEEecCCCHH-HHhcCCcCCEEE------ecCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCC
Confidence 3578888987664 7888 677887 334567999999999999987543 234445555 6788776543
Q ss_pred CChhHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 017085 318 EGITPLAKNIVKLATHVERRLTMGKRGYER 347 (377)
Q Consensus 318 ~~~~~la~~i~~l~~~~~~~~~~~~~~~~~ 347 (377)
.+.++++++|.++++|++ .+++++++++.
T Consensus 397 ~~~~~l~~~i~~ll~~~~-~~~~r~~a~~l 425 (456)
T 2c1x_A 397 FTKSGLMSCFDQILSQEK-GKKLRENLRAL 425 (456)
T ss_dssp CCHHHHHHHHHHHHHSHH-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence 348999999999999986 55666666553
No 58
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=98.00 E-value=0.0013 Score=58.15 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=69.0
Q ss_pred HHHHHhCCCCC-CeEEEEeccccccchh--HHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhc
Q 017085 166 HVRESLGVRNE-DLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 242 (377)
Q Consensus 166 ~~r~~~~~~~~-~~~i~~~G~~~~~Kg~--~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~ 242 (377)
.+.+..|++.+ +++.+..|.-.+.|.. +.+.+++..+.+ .+++++++|+.. ..+..++..+..
T Consensus 174 ~~l~~~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~---------~g~~vvl~g~~~-----e~~~~~~i~~~~ 239 (349)
T 3tov_A 174 EFYSSHGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGR---------LGYKTVFFGGPM-----DLEMVQPVVEQM 239 (349)
T ss_dssp HHHHHTTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHH---------HTCEEEECCCTT-----THHHHHHHHHTC
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHh---------CCCeEEEEeCcc-----hHHHHHHHHHhc
Confidence 34456677654 4566666754455544 456666655433 257788877642 344455555554
Q ss_pred CCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 243 KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 243 ~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
+ ...+.+.|.. .++.++++.||++|.+-. |..-+ |.++|+|+|+-=
T Consensus 240 ~-~~~~~l~g~~sl~e~~ali~~a~~~i~~Ds------G~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 240 E-TKPIVATGKFQLGPLAAAMNRCNLLITNDS------GPMHV-GISQGVPIVALY 287 (349)
T ss_dssp S-SCCEECTTCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHTTTCCEEEEC
T ss_pred c-cccEEeeCCCCHHHHHHHHHhCCEEEECCC------CHHHH-HHhcCCCEEEEE
Confidence 4 2346666754 689999999999997533 44444 899999999863
No 59
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.97 E-value=8e-05 Score=68.05 Aligned_cols=149 Identities=11% Similarity=-0.006 Sum_probs=91.1
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHH-HHHHhcCCCCcEEEecC
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELR-NYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~-~~~~~~~~~~~v~~~g~ 253 (377)
+...+++..|+.... ..+.+.+.+.. |.+ .+.+++++-+.. ..+.+. ....+ .++++.+.++
T Consensus 272 ~~~vVyvsfGS~~~~-~~~~~~el~~~----l~~-----~~~~flw~~~~~-----~~~~lp~~~~~~--~~~~~~vv~w 334 (454)
T 3hbf_A 272 NSSVVYISFGSVVTP-PPHELTALAES----LEE-----CGFPFIWSFRGD-----PKEKLPKGFLER--TKTKGKIVAW 334 (454)
T ss_dssp TTCEEEEECCSSCCC-CHHHHHHHHHH----HHH-----HCCCEEEECCSC-----HHHHSCTTHHHH--TTTTEEEESS
T ss_pred CCceEEEecCCCCcC-CHHHHHHHHHH----HHh-----CCCeEEEEeCCc-----chhcCCHhHHhh--cCCceEEEee
Confidence 455677777887542 23334333332 222 356777654431 111111 11111 2468888899
Q ss_pred cCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC----CcccceecC-cceeeecCCCCChhHHHHHHH
Q 017085 254 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIVVNG-TTGLLHPVGKEGITPLAKNIV 328 (377)
Q Consensus 254 ~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~----~~~e~~~~~-~~g~~~~~~~~~~~~la~~i~ 328 (377)
..+ ..+++.+++.++-++ +..++++||+++|+|+|+-... .....+.+. +.|..++.+..+.++++++|.
T Consensus 335 ~Pq-~~vL~h~~v~~fvtH----~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~ 409 (454)
T 3hbf_A 335 APQ-VEILKHSSVGVFLTH----SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALE 409 (454)
T ss_dssp CCH-HHHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHH
T ss_pred CCH-HHHHhhcCcCeEEec----CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHH
Confidence 866 589999996554444 3357899999999999987543 233445453 688887754445899999999
Q ss_pred HHhhCHHHHHHHHHHHHH
Q 017085 329 KLATHVERRLTMGKRGYE 346 (377)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~ 346 (377)
+++++++ .+++++++++
T Consensus 410 ~ll~~~~-~~~~r~~a~~ 426 (454)
T 3hbf_A 410 LTMSSEK-GGIMRQKIVK 426 (454)
T ss_dssp HHHSSHH-HHHHHHHHHH
T ss_pred HHHCCCh-HHHHHHHHHH
Confidence 9998853 3455555554
No 60
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.88 E-value=0.00032 Score=64.95 Aligned_cols=151 Identities=15% Similarity=0.039 Sum_probs=91.4
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCC--c-ccHHHHHHHHHHHhcCCCCcEEEe
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN--A-QTKFESELRNYVMQKKIQDRVHFV 251 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~--~-~~~~~~~l~~~~~~~~~~~~v~~~ 251 (377)
+...+++..|++.. ...+.+.+.+..+ .+ .+.+++++-.... + .....+.+.+. . ++++.+.
T Consensus 294 ~~~vv~vs~GS~~~-~~~~~~~~~~~~l----~~-----~~~~~l~~~~~~~~~~~~~~l~~~~~~~---~--~~~~~v~ 358 (482)
T 2pq6_A 294 PGSVVYVNFGSTTV-MTPEQLLEFAWGL----AN-----CKKSFLWIIRPDLVIGGSVIFSSEFTNE---I--ADRGLIA 358 (482)
T ss_dssp TTCEEEEECCSSSC-CCHHHHHHHHHHH----HH-----TTCEEEEECCGGGSTTTGGGSCHHHHHH---H--TTTEEEE
T ss_pred CCceEEEecCCccc-CCHHHHHHHHHHH----Hh-----cCCcEEEEEcCCccccccccCcHhHHHh---c--CCCEEEE
Confidence 34567777787643 2334444433322 22 4577776633210 0 00011233222 2 4689999
Q ss_pred cCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC----ccccee-cCcceeeecCCCCChhHHHHH
Q 017085 252 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG----TTEIVV-NGTTGLLHPVGKEGITPLAKN 326 (377)
Q Consensus 252 g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~----~~e~~~-~~~~g~~~~~~~~~~~~la~~ 326 (377)
++..+. ++|+.+++-++-+ -+..+++.||+++|+|+|+-...+ ....+. ..+.|..++ .+.+.++++++
T Consensus 359 ~~~pq~-~~L~h~~~~~~vt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-~~~~~~~l~~~ 432 (482)
T 2pq6_A 359 SWCPQD-KVLNHPSIGGFLT----HCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-TNVKREELAKL 432 (482)
T ss_dssp SCCCHH-HHHTSTTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECC-SSCCHHHHHHH
T ss_pred eecCHH-HHhcCCCCCEEEe----cCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEEC-CCCCHHHHHHH
Confidence 998665 6887766633323 334679999999999999986432 333343 456787776 33348999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHH
Q 017085 327 IVKLATHVERRLTMGKRGYER 347 (377)
Q Consensus 327 i~~l~~~~~~~~~~~~~~~~~ 347 (377)
|.++++|++ .+++++++++.
T Consensus 433 i~~ll~~~~-~~~~r~~a~~l 452 (482)
T 2pq6_A 433 INEVIAGDK-GKKMKQKAMEL 452 (482)
T ss_dssp HHHHHTSHH-HHHHHHHHHHH
T ss_pred HHHHHcCCc-HHHHHHHHHHH
Confidence 999999986 46677776654
No 61
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.65 E-value=0.00027 Score=62.49 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=69.9
Q ss_pred HHHHHHHhCCC-CCCeEEEEecc-ccccchhH--HHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHH
Q 017085 164 REHVRESLGVR-NEDLLFAIINS-VSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 239 (377)
Q Consensus 164 ~~~~r~~~~~~-~~~~~i~~~G~-~~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~ 239 (377)
++.+++.++++ +++++++..|. ..+.|... .+.+++..+.+ .+++++++|+.. ..+..++..
T Consensus 167 ~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~---------~~~~vvl~g~~~-----e~~~~~~i~ 232 (348)
T 1psw_A 167 KSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID---------EGYQVVLFGSAK-----DHEAGNEIL 232 (348)
T ss_dssp HHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH---------TTCEEEECCCGG-----GHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHH---------CCCeEEEEeChh-----hHHHHHHHH
Confidence 34567778886 44566677776 44556554 66666665533 368888887652 233333333
Q ss_pred HhcCC---CCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 240 MQKKI---QDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 240 ~~~~~---~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
+..+- ...+.+.|.. .++.++++.||++|.+.. |.. -.|.++|+|+|+-
T Consensus 233 ~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds------g~~-HlAaa~g~P~v~l 286 (348)
T 1psw_A 233 AALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS------GLM-HVAAALNRPLVAL 286 (348)
T ss_dssp TTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS------HHH-HHHHHTTCCEEEE
T ss_pred HhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC------HHH-HHHHHcCCCEEEE
Confidence 32210 1234566754 789999999999997653 333 3399999999975
No 62
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.57 E-value=0.00088 Score=61.62 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=80.7
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
+...+++..|+....-+.+.+.+++..+ .+ .+++++++-+.... ...+.+.+.... ++++.+.++.
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l----~~-----~~~~~l~~~~~~~~--~l~~~~~~~~~~---~~~~~v~~w~ 340 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGL----KH-----SGVRFLWSNSAEKK--VFPEGFLEWMEL---EGKGMICGWA 340 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHH----HH-----HTCEEEEECCCCGG--GSCTTHHHHHHH---HCSEEEESSC
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHH----Hh-----CCCcEEEEECCCcc--cCChhHHHhhcc---CCCEEEEccC
Confidence 4456777788876222323333333322 21 35677765443100 011222222210 2478888887
Q ss_pred CCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC----Ccccc-eecCcceeee-c---CC--CCChh
Q 017085 255 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEI-VVNGTTGLLH-P---VG--KEGIT 321 (377)
Q Consensus 255 ~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~----~~~e~-~~~~~~g~~~-~---~~--~~~~~ 321 (377)
.+. .+|. ++|++|. -+..+++.||+++|+|+|+-... ..... +...+.|..+ . .+ ..+.+
T Consensus 341 pq~-~vL~h~~~~~fvt------h~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~ 413 (463)
T 2acv_A 341 PQV-EVLAHKAIGGFVS------HCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAE 413 (463)
T ss_dssp CHH-HHHHSTTEEEEEE------CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHH
T ss_pred CHH-HHhCCCccCeEEe------cCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCccccHH
Confidence 665 5776 6777873 34468999999999999997543 23444 3555688877 2 22 22489
Q ss_pred HHHHHHHHHhh
Q 017085 322 PLAKNIVKLAT 332 (377)
Q Consensus 322 ~la~~i~~l~~ 332 (377)
+++++|.++++
T Consensus 414 ~l~~ai~~ll~ 424 (463)
T 2acv_A 414 EIEKGLKDLMD 424 (463)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999999996
No 63
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.49 E-value=0.0023 Score=59.13 Aligned_cols=81 Identities=12% Similarity=-0.002 Sum_probs=56.8
Q ss_pred EEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCC----Ccccce-ecCcceeeecCC---CCC
Q 017085 248 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAG----GTTEIV-VNGTTGLLHPVG---KEG 319 (377)
Q Consensus 248 v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~----~~~e~~-~~~~~g~~~~~~---~~~ 319 (377)
+.+.++..+. ++|+.+++.++-+. +..++++||+++|+|+|+-... .....+ ..-+.|..++.. ..+
T Consensus 341 ~~v~~w~Pq~-~vL~h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~ 415 (480)
T 2vch_A 341 FVIPFWAPQA-QVLAHPSTGGFLTH----CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVR 415 (480)
T ss_dssp EEEESCCCHH-HHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCC
T ss_pred EEEeCccCHH-HHhCCCCcCeEEec----ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccC
Confidence 4555677555 89999996444443 3457899999999999997543 234443 455677776543 234
Q ss_pred hhHHHHHHHHHhhC
Q 017085 320 ITPLAKNIVKLATH 333 (377)
Q Consensus 320 ~~~la~~i~~l~~~ 333 (377)
.++++++|.+++++
T Consensus 416 ~~~l~~av~~vl~~ 429 (480)
T 2vch_A 416 REEVARVVKGLMEG 429 (480)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999983
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=97.46 E-value=0.013 Score=51.04 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=61.5
Q ss_pred CCCCCCeEEEEeccccccchhH--HHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE
Q 017085 172 GVRNEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 249 (377)
Q Consensus 172 ~~~~~~~~i~~~G~~~~~Kg~~--~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~ 249 (377)
+..+++++++..|.-.+.|... .+.+.+. .|.+ .+++++++++++ ...+..++..+.. + ++.
T Consensus 174 ~~~~~~~i~l~pga~~~~k~wp~~~~~~l~~----~L~~-----~~~~vvl~~g~~----~e~~~~~~i~~~~--~-~~~ 237 (326)
T 2gt1_A 174 PTDAGEYAVFLHATTRDDKHWPEEHWRELIG----LLAD-----SGIRIKLPWGAP----HEEERAKRLAEGF--A-YVE 237 (326)
T ss_dssp CTTTTSEEEEECCCSSGGGSCCHHHHHHHHH----HTTT-----TCCEEEECCSSH----HHHHHHHHHHTTC--T-TEE
T ss_pred cccCCCEEEEEeCCCCccccCCHHHHHHHHH----HHHH-----CCCcEEEecCCH----HHHHHHHHHHhhC--C-ccc
Confidence 3445567777777655556554 4444444 4433 467888874331 2233333433332 2 456
Q ss_pred EecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 250 FVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 250 ~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
+.|.. .++.++++.||++|.+-. |..=+ |.|+|+|+|+-
T Consensus 238 l~g~~sl~el~ali~~a~l~I~~DS------G~~Hl-Aaa~g~P~v~l 278 (326)
T 2gt1_A 238 VLPKMSLEGVARVLAGAKFVVSVDT------GLSHL-TAALDRPNITV 278 (326)
T ss_dssp ECCCCCHHHHHHHHHTCSEEEEESS------HHHHH-HHHTTCCEEEE
T ss_pred ccCCCCHHHHHHHHHhCCEEEecCC------cHHHH-HHHcCCCEEEE
Confidence 67753 789999999999997643 44444 77899999975
No 65
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=97.40 E-value=0.0001 Score=60.11 Aligned_cols=73 Identities=7% Similarity=-0.031 Sum_probs=53.3
Q ss_pred cEEEecCcCCHHHHHH-hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCc--------ccceecCcceeeecCCC
Q 017085 247 RVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGT--------TEIVVNGTTGLLHPVGK 317 (377)
Q Consensus 247 ~v~~~g~~~~~~~~~~-~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~--------~e~~~~~~~g~~~~~~~ 317 (377)
++...++.+++.++|+ .||++|. -+...+++|++++|+|.|.-..+.. ++.+.+.+.++++ +
T Consensus 115 ~v~v~~f~~~m~~~l~~~AdlvIs------haGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~---~ 185 (224)
T 2jzc_A 115 KVIGFDFSTKMQSIIRDYSDLVIS------HAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC---A 185 (224)
T ss_dssp EEEECCSSSSHHHHHHHHCSCEEE------SSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE---C
T ss_pred eEEEeeccchHHHHHHhcCCEEEE------CCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc---C
Confidence 5677788899999999 9999994 3457799999999999998765421 2233333345555 3
Q ss_pred CChhHHHHHHHHH
Q 017085 318 EGITPLAKNIVKL 330 (377)
Q Consensus 318 ~~~~~la~~i~~l 330 (377)
++.|+++|.++
T Consensus 186 --~~~L~~~i~~l 196 (224)
T 2jzc_A 186 --PTETGLIAGLR 196 (224)
T ss_dssp --SCTTTHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 67788888776
No 66
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=92.54 E-value=1.7 Score=31.46 Aligned_cols=110 Identities=9% Similarity=0.096 Sum_probs=71.1
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh---------cCEEEecCCCCCCccchHHHHHH
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---------IDVLVQNSQAWGECFGRITIEAM 286 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~---------adv~l~ps~~~~e~~~~~~~Ea~ 286 (377)
.+++|+.+.. .....+....+..|....+......++..+.+.. .|++++-..- .+.-|..+++.+
T Consensus 3 ~~ilivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l 77 (140)
T 1k68_A 3 KKIFLVEDNK----ADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL-PKKDGREVLAEI 77 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC-SSSCHHHHHHHH
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC-CcccHHHHHHHH
Confidence 4677777753 4567778888877764456666655566666653 6887764431 334566677666
Q ss_pred H-----cCCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 287 A-----FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 287 a-----~g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
. ..+|+|.-. ... ..+.+..|..+++..+-+ .+++..+|.+++.
T Consensus 78 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 130 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSAN--LSQLFQIVKGIEE 130 (140)
T ss_dssp HHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCC--HHHHHHHHHHHHH
Confidence 5 457777543 322 233344577889999887 9999999988753
No 67
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=92.38 E-value=1.6 Score=31.94 Aligned_cols=112 Identities=12% Similarity=0.177 Sum_probs=72.2
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc---
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~--- 288 (377)
...+++|+.+.. .....+....++.|....+.......+..+.+.. .|++++-..- .+.-|..+++.+..
T Consensus 4 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~ 78 (144)
T 3kht_A 4 RSKRVLVVEDNP----DDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL-PIANGFEVMSAVRKPGA 78 (144)
T ss_dssp -CEEEEEECCCH----HHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC-GGGCHHHHHHHHHSSST
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC-CCCCHHHHHHHHHhccc
Confidence 357788887753 4567777788877764345555544455555543 5777764431 34456777877765
Q ss_pred --CCcEEEeCCC-C---cccceecCcceeeecCC-CCChhHHHHHHHHHhh
Q 017085 289 --QLPVLGTAAG-G---TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 --g~PvI~s~~~-~---~~e~~~~~~~g~~~~~~-~~~~~~la~~i~~l~~ 332 (377)
++|+|+.... . ..+.+..|..+++..+. + .+++.++|.++++
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~--~~~l~~~i~~~l~ 127 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNN--VTDFYGRIYAIFS 127 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTS--HHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCc--HHHHHHHHHHHHH
Confidence 5788765322 2 22334557889999998 7 9999999988764
No 68
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=91.88 E-value=3.8 Score=32.22 Aligned_cols=311 Identities=12% Similarity=0.067 Sum_probs=160.5
Q ss_pred hHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHh-hhcccEEEEcCchhhhH----H---HHHh
Q 017085 5 FLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT-ALKADLIVLNTAVAGKW----L---DAVL 76 (377)
Q Consensus 5 ~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Div~~~~~~~~~~----~---~~~~ 76 (377)
..+.+.||||+++.....+-.. .-.+.-+...++++..+...+.++ -++.|++++++..+... + ..++
T Consensus 26 dwfiknghevtlvyakdksftr----tsshdhksfsipvilakeydkalklvndcdiliinsvpatsvqeatinnykkll 101 (401)
T 1xv5_A 26 DWFIKNGHEVTLVYAKDKSFTR----TSSHDHKSFSIPVILAKEYDKALKLVNDCDILIINSVPATSVQEATINNYKKLL 101 (401)
T ss_dssp HHHHHTTCEEEEEEECSSCCTT----TTSSSCTTTCEEECTTTCHHHHHHHHTSCSEEEEEECCBTTSCHHHHHHHHHHH
T ss_pred hhhhcCCcEEEEEEeccccccc----cccccCccccceeEehhhhHHHhhhhccCcEEEEccCccchhHHHHHhhHHHHH
Confidence 3466899999999866543211 112233345677777666554444 47899999987432111 1 1222
Q ss_pred hcCCCccccceeEEeeeecccccc--hhhhccccccceeeeeccchhhHhhhhhhh-hhh----c--cCCCeEEEEcCCh
Q 017085 77 KEDVPRVLPNVLWWIHEMRGHYFK--LDYVKHLPLVAGAMIDSHVTAEYWKNRTRE-RLR----I--KMPDTYVVHLGNS 147 (377)
Q Consensus 77 ~~~~~~~~~~~v~~~h~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~----~--~~~~~~vi~ngi~ 147 (377)
..-.|.. +++..-|+..-.... .......+++|-++..|..- + +.+-+++ .|. + +.+..-.++|--+
T Consensus 102 dnikpsi--rvvvyqhdhsvlslrrnlgleetvrradvifshsdng-d-fnkvlmkewypetvslfddieeaptvynfqp 177 (401)
T 1xv5_A 102 DNIKPSI--RVVVYQHDHSVLSLRRNLGLEETVRRADVIFSHSDNG-D-FNKVLMKEWYPETVSLFDDIEEAPTVYNFQP 177 (401)
T ss_dssp HHSCTTS--EEEEEECCCSHHHHTTBSSHHHHHHHCSEEEESCTTS-H-HHHTHHHHHSCSSCCSSSCCCCCCCEEECCC
T ss_pred hcCCCce--EEEEEeccchhhhhhhhcChHHhhhhhceEEecCCCC-c-HHHHHHHhhccchhhhhcchhhCCceeccCC
Confidence 2223332 566666654221111 12233446778777766532 1 1111111 121 0 0111122333221
Q ss_pred hhhHHHhhhhhhhhhhHHHHHHHhCCCCCC---eEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecC
Q 017085 148 KELMEVAEDNVAKRVLREHVRESLGVRNED---LLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD 224 (377)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~ 224 (377)
+-.. -.+|..+=-+-.. -+=-++||-..+||.-.+.+.-.+.++ - ..-.-+.-|-.
T Consensus 178 pmdi-------------vkvrstywkdvseinmninrwigrtttwkgfyqmfdfhekflk---p-----agkstvmegle 236 (401)
T 1xv5_A 178 PMDI-------------VKVRSTYWKDVSEINMNINRWIGRTTTWKGFYQMFDFHEKFLK---P-----AGKSTVMEGLE 236 (401)
T ss_dssp CBCH-------------HHHHHHHCCCGGGCEEEEEEEECCSCGGGCHHHHHHHHHHTTT---T-----TTCEEEEECCC
T ss_pred Ccee-------------eeeehhhhccHHHhhcchhhhhcccchhHhHHHHhhHHHHhcC---c-----cchhhhhhhhh
Confidence 1110 1122222111111 223468999999999888887765433 1 12233344432
Q ss_pred CCcccHHHHHHHHHHHhcCCCCcEEEecC--------------------c-CCHHHHHHhcCEEEecCCC----CCCccc
Q 017085 225 MNAQTKFESELRNYVMQKKIQDRVHFVNK--------------------T-LTVAPYLAAIDVLVQNSQA----WGECFG 279 (377)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~v~~~g~--------------------~-~~~~~~~~~adv~l~ps~~----~~e~~~ 279 (377)
. . +..- .+++-|++ ..+.|. . .++.+-|+.+.+...-|.- .....-
T Consensus 237 r--s-pafi----aikekgip--yeyygnreidkmnlapnqpaqildcyinsemlermsksgfgyqlsklnqkylqrsle 307 (401)
T 1xv5_A 237 R--S-PAFI----AIKEKGIP--YEYYGNREIDKMNLAPNQPAQILDCYINSEMLERMSKSGFGYQLSKLNQKYLQRSLE 307 (401)
T ss_dssp C--S-HHHH----HHHHTTCC--EEEECGGGGGGCCCSSSCCEEEESCCCHHHHHHHHHTEEEEEECCCCCGGGCSSCCC
T ss_pred c--C-CceE----EEcccCCc--hhhcCcchhhhhcCCCCCcchhhhheecHHHHHHhhhcCcccchHHHHHHHHHhhhh
Confidence 1 1 1221 23444554 333331 1 4566777777776654431 123456
Q ss_pred hHHHHHHHcCCcEEEeC---------CCCcccceecCcceee-ecCCCCChhHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 017085 280 RITIEAMAFQLPVLGTA---------AGGTTEIVVNGTTGLL-HPVGKEGITPLAKNIVKLATHVERRLTMGKRGYERVK 349 (377)
Q Consensus 280 ~~~~Ea~a~g~PvI~s~---------~~~~~e~~~~~~~g~~-~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 349 (377)
.+-+|--|||+..|--. +...+- . ..+.|++ ++..| .+.--+.|.++-+|+.++.+-++.|+++.-
T Consensus 308 ythlelgacgtipvfwkstgenlkfrvdntpl-t-shdsgiiwfdend--mestferikelssdralydrerekayefly 383 (401)
T 1xv5_A 308 YTHLELGACGTIPVFWKSTGENLKFRVDNTPL-T-SHDSGIIWFDEND--MESTFERIKELSSDRALYDREREKAYEFLY 383 (401)
T ss_dssp HHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBG-G-GSCCSCEEECTTC--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hheeecccccceeeeecccCcceEEEecCCcc-c-ccCCceEEecCCc--hHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 77899999998666421 112221 1 2235544 45444 888889999999999999999999999876
Q ss_pred HhcCHHHH
Q 017085 350 EIFQEHHM 357 (377)
Q Consensus 350 ~~f~~~~~ 357 (377)
++-+..-.
T Consensus 384 qhqdssfc 391 (401)
T 1xv5_A 384 QHQDSSFC 391 (401)
T ss_dssp HHHBHHHH
T ss_pred hcccccch
Confidence 65444433
No 69
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=91.48 E-value=1.9 Score=31.95 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=72.1
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH-----------hcCEEEecCCCCCCccchHHH
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA-----------AIDVLVQNSQAWGECFGRITI 283 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~-----------~adv~l~ps~~~~e~~~~~~~ 283 (377)
..+++|+.+.. .....+...+++.|....+.......+..+.+. ..|++++-..- .+.-|..++
T Consensus 4 ~~~ILivddd~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l-~~~~g~~~~ 78 (152)
T 3heb_A 4 SVTIVMIEDDL----GHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL-PDMTGIDIL 78 (152)
T ss_dssp -CEEEEECCCH----HHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC-SSSBHHHHH
T ss_pred CceEEEEeCCH----HHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCC-CCCcHHHHH
Confidence 46778887753 456778888888876545666665555556553 36777764331 344567777
Q ss_pred HHHHc-----CCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 284 EAMAF-----QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 284 Ea~a~-----g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
+.+.. ++|+|... ... ..+....|..+++..+-+ .++|.++|.++.
T Consensus 79 ~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 133 (152)
T 3heb_A 79 KLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVN--YENFANAIRQLG 133 (152)
T ss_dssp HHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHH
Confidence 77654 57777543 322 223445577899999988 999999998773
No 70
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=90.59 E-value=2.5 Score=30.80 Aligned_cols=112 Identities=11% Similarity=0.101 Sum_probs=70.5
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH----hcCEEEecCCCCCCccchHHHHHHH---
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA----AIDVLVQNSQAWGECFGRITIEAMA--- 287 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~----~adv~l~ps~~~~e~~~~~~~Ea~a--- 287 (377)
..+++|+.+.. ...+.+....++.|. .+......++....+. ..|++++-..- .+.-|..+++.+.
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~ 75 (143)
T 3jte_A 3 LAKILVIDDES----TILQNIKFLLEIDGN--EVLTASSSTEGLRIFTENCNSIDVVITDMKM-PKLSGMDILREIKKIT 75 (143)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTTTTCCEEEEESCC-SSSCHHHHHHHHHHHC
T ss_pred CCEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC-CCCcHHHHHHHHHHhC
Confidence 35677777753 356677777777664 3554444445555554 56887764431 3445666665554
Q ss_pred cCCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhCHH
Q 017085 288 FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 335 (377)
Q Consensus 288 ~g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~ 335 (377)
..+|+|... ... ..+.+..|..+++..+.+ .+++..+|..++....
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~~~ 125 (143)
T 3jte_A 76 PHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVT--AQDLSIAINNAINRKK 125 (143)
T ss_dssp TTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHHHHHH
Confidence 367777543 322 233455677899999988 9999999998876443
No 71
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=90.43 E-value=3.1 Score=30.34 Aligned_cols=115 Identities=8% Similarity=-0.052 Sum_probs=71.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh-------cCEEEecCCCCCCccchHHHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEAM 286 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~-------adv~l~ps~~~~e~~~~~~~Ea~ 286 (377)
...+++|+.+.. .....+....+..+....+......++..+.+.. .|++++-..- .+.-|..+++.+
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l 82 (146)
T 3ilh_A 8 KIDSVLLIDDDD----IVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINM-PGINGWELIDLF 82 (146)
T ss_dssp CEEEEEEECSCH----HHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSC-SSSCHHHHHHHH
T ss_pred ccceEEEEeCCH----HHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCC-CCCCHHHHHHHH
Confidence 456778887752 3456677777776643245555544556566655 6887764431 344566777665
Q ss_pred Hc-------CCcEEEeCCCC----cccceecC-cceeeecCCCCChhHHHHHHHHHhhCHH
Q 017085 287 AF-------QLPVLGTAAGG----TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVE 335 (377)
Q Consensus 287 a~-------g~PvI~s~~~~----~~e~~~~~-~~g~~~~~~~~~~~~la~~i~~l~~~~~ 335 (377)
.. .+|+|...... ..+....+ ..+++..+-+ .++|.++|.+......
T Consensus 83 ~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 83 KQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLT--ANALNNLYNKVLNEGH 141 (146)
T ss_dssp HHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCC--HHHHHHHHHHHHCC--
T ss_pred HHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCC--HHHHHHHHHHHHHhcc
Confidence 54 56776543322 22233345 6789999988 9999999998877543
No 72
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=90.32 E-value=2.3 Score=31.23 Aligned_cols=110 Identities=7% Similarity=0.128 Sum_probs=70.2
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc---
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~--- 288 (377)
...+++|+.+.. .....+.......|. .|......++....+. ..|++++-..- .+.-|..+++.+..
T Consensus 7 ~~~~iLivd~~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 79 (147)
T 2zay_A 7 KWWRIMLVDTQL----PALAASISALSQEGF--DIIQCGNAIEAVPVAVKTHPHLIITEANM-PKISGMDLFNSLKKNPQ 79 (147)
T ss_dssp -CEEEEEECTTG----GGGHHHHHHHHHHTE--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHTSTT
T ss_pred CCceEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHHcCCCCEEEEcCCC-CCCCHHHHHHHHHcCcc
Confidence 467888888764 356667777776664 3555444445545544 36887764431 34456777877764
Q ss_pred --CCcEEEe-CCCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 --QLPVLGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 --g~PvI~s-~~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.+|+|+. ..... .+.+..|..+++..+.+ .++|..+|..++.
T Consensus 80 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~ 127 (147)
T 2zay_A 80 TASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVN--AIRLSARIKRVLK 127 (147)
T ss_dssp TTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 5777754 33322 22344577899999888 9999999988875
No 73
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=90.23 E-value=3.1 Score=30.36 Aligned_cols=112 Identities=8% Similarity=0.077 Sum_probs=72.3
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH------------hcCEEEecCCCCCCccchH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA------------AIDVLVQNSQAWGECFGRI 281 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~------------~adv~l~ps~~~~e~~~~~ 281 (377)
...+++|+.+.. .....+....++.|....+......++..+.+. ..|++++-..- .+.-|..
T Consensus 5 ~~~~iLivdd~~----~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~ 79 (149)
T 1k66_A 5 ATQPLLVVEDSD----EDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNL-PGTDGRE 79 (149)
T ss_dssp TTSCEEEECCCH----HHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCC-SSSCHHH
T ss_pred CCccEEEEECCH----HHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCC-CCCCHHH
Confidence 446777887753 456777888888776435666665556666665 35887764431 3345667
Q ss_pred HHHHHH-----cCCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 282 TIEAMA-----FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 282 ~~Ea~a-----~g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+++.+. ..+|+|+.. ... ..+.+..|..+++..+-+ .++|.+.|.+++.
T Consensus 80 ~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~ 137 (149)
T 1k66_A 80 VLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE--IDRLTETVQTFIK 137 (149)
T ss_dssp HHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHHH
T ss_pred HHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 777775 456777543 322 223344577889999887 9999999988753
No 74
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=90.19 E-value=4 Score=29.53 Aligned_cols=110 Identities=9% Similarity=0.005 Sum_probs=69.3
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc---
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~--- 288 (377)
...+++|+.+.. ...+.+....+..|. .|......++..+.+.. .|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 78 (142)
T 3cg4_A 6 HKGDVMIVDDDA----HVRIAVKTILSDAGF--HIISADSGGQCIDLLKKGFSGVVLLDIMM-PGMDGWDTIRAILDNSL 78 (142)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTCCCEEEEEESCC-SSSCHHHHHHHHHHTTC
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHCCe--EEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhcc
Confidence 457788887753 456677777777765 35555444455555543 5777754331 33456677777754
Q ss_pred --CCcEEEe-CC---CCcccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 --QLPVLGT-AA---GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 --g~PvI~s-~~---~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.+|+|.. .. ....+.+..|..+++..+-+ .++|.++|..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 79 EQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFD--NEDLIEKTTFFMG 126 (142)
T ss_dssp CTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 4677654 22 22344455567789999887 9999999988764
No 75
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=89.65 E-value=4 Score=29.10 Aligned_cols=110 Identities=12% Similarity=0.152 Sum_probs=69.6
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH---hcCEEEecCCCCCCccchHHHHHHHc---
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGECFGRITIEAMAF--- 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~---~adv~l~ps~~~~e~~~~~~~Ea~a~--- 288 (377)
..+++|+.+.. .....+....++.|.. .+.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 5 ~~~iLivdd~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~-p~~~g~~~~~~lr~~~~ 78 (129)
T 3h1g_A 5 SMKLLVVDDSS----TMRRIIKNTLSRLGYE-DVLEAEHGVEAWEKLDANADTKVLITDWNM-PEMNGLDLVKKVRSDSR 78 (129)
T ss_dssp -CCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHCTTCCEEEECSCC-SSSCHHHHHHHHHTSTT
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 46778887753 4567778888887764 3444443334333332 36777754331 34457778877753
Q ss_pred --CCcEEEeC-CCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 --QLPVLGTA-AGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 --g~PvI~s~-~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.+|+|... .... .+.+..|..+++..|-+ .+++.++|..++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 79 FKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFT--PQVLKEKLEVVLG 126 (129)
T ss_dssp CTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCC--HHHHHHHHHHHHC
T ss_pred CCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCC--HHHHHHHHHHHhc
Confidence 57877643 3322 23445578899999988 9999999988875
No 76
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=89.62 E-value=4.5 Score=29.23 Aligned_cols=111 Identities=12% Similarity=0.061 Sum_probs=69.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc---
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~--- 288 (377)
...+++|+.+.. .....+....++.|. .+......++..+.+.. .|++++-..- .+.-|..+++.+..
T Consensus 5 ~~~~iLivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 77 (140)
T 3grc_A 5 PRPRILICEDDP----DIARLLNLMLEKGGF--DSDMVHSAAQALEQVARRPYAAMTVDLNL-PDQDGVSLIRALRRDSR 77 (140)
T ss_dssp CCSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHTSGG
T ss_pred CCCCEEEEcCCH----HHHHHHHHHHHHCCC--eEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCcc
Confidence 345777777653 356667777777665 35544444444444433 5777764431 34456777777664
Q ss_pred --CCcEEEeCCCC----cc-cceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 289 --QLPVLGTAAGG----TT-EIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 289 --g~PvI~s~~~~----~~-e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
.+|+|.-.... .. +....|..+++..+-+ .++|..+|.++++.
T Consensus 78 ~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 78 TRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPID--ENLLILSLHRAIDN 127 (140)
T ss_dssp GTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCC--HHHHHHHHHHHHHH
T ss_pred cCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCC--HHHHHHHHHHHHHh
Confidence 67887654322 11 3445577889999887 99999999988753
No 77
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=89.56 E-value=3.2 Score=29.98 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=64.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH--c-
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA--F- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a--~- 288 (377)
...+++|+.+.. .....+...++..|. .+......++....+.. .|++++|. .-|..+++.+. .
T Consensus 17 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvi~~~-----~~g~~~~~~l~~~~~ 85 (137)
T 2pln_A 17 GSMRVLLIEKNS----VLGGEIEKGLNVKGF--MADVTESLEDGEYLMDIRNYDLVMVSD-----KNALSFVSRIKEKHS 85 (137)
T ss_dssp TCSEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHSCCSEEEECS-----TTHHHHHHHHHHHST
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHHcCCCCEEEEcC-----ccHHHHHHHHHhcCC
Confidence 456777777653 345666666766654 35544443444444443 57777333 33556665554 3
Q ss_pred CCcEEEeC-CCC---cccceecCcceeeecCC-CCChhHHHHHHHHHhhC
Q 017085 289 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 333 (377)
Q Consensus 289 g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~-~~~~~~la~~i~~l~~~ 333 (377)
.+|+|... ... ..+.+..|..+++..+. + .++|..+|..++..
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~--~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRS--IKALVARIEARLRF 133 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSC--HHHHHHHHHHHTC-
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCC--HHHHHHHHHHHHhh
Confidence 67877543 322 23334457788999987 8 99999999888753
No 78
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=89.40 E-value=4.7 Score=29.19 Aligned_cols=109 Identities=14% Similarity=0.065 Sum_probs=69.3
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH---hcCEEEecCCCCCC-ccchHHHHHHH--c
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGE-CFGRITIEAMA--F 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~---~adv~l~ps~~~~e-~~~~~~~Ea~a--~ 288 (377)
..+++|+.+.. .....+....++.|. .+.......+....+. ..|++++-..- .+ .-|..+++.+. .
T Consensus 5 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 5 DKKILIVEDSK----FQAKTIANILNKYGY--TVEIALTGEAAVEKVSGGWYPDLILMDIEL-GEGMDGVQTALAIQQIS 77 (140)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCCSEEEEESSC-SSSCCHHHHHHHHHHHC
T ss_pred CcEEEEEeCCH----HHHHHHHHHHHHcCC--EEEEecChHHHHHHHhcCCCCCEEEEeccC-CCCCCHHHHHHHHHhCC
Confidence 46778887753 456777777777764 3554444445555553 35887765431 23 45666666554 4
Q ss_pred CCcEEEeC-CC---CcccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 QLPVLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 g~PvI~s~-~~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.+|+|+-. .. ...+....|..+++..+-+ .++|..+|.+++.
T Consensus 78 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSAT--EQVLITIVEMALR 123 (140)
T ss_dssp CCCEEEEESSSSCCCCGGGGGSCEEEEEETTCC--HHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCC--HHHHHHHHHHHHH
Confidence 77877542 22 2334555677899999988 9999999988875
No 79
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=89.15 E-value=4.5 Score=29.75 Aligned_cols=111 Identities=10% Similarity=0.139 Sum_probs=67.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH---------hcCEEEecCCCCCCccchHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---------AIDVLVQNSQAWGECFGRITIE 284 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~---------~adv~l~ps~~~~e~~~~~~~E 284 (377)
...+++|+.+.. .....+....+..+....+.......+..+++. ..|++++-..- .+.-|..+++
T Consensus 7 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~l-p~~~g~~l~~ 81 (149)
T 1i3c_A 7 PPKVILLVEDSK----ADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL-PKKDGREVLA 81 (149)
T ss_dssp CCEEEEEECCCH----HHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCC-SSSCHHHHHH
T ss_pred CCCeEEEEECCH----HHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCC-CCCcHHHHHH
Confidence 356777887752 345667777776554323444443345555554 36887764331 2334666777
Q ss_pred HHHc-----CCcEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 285 AMAF-----QLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 285 a~a~-----g~PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
.+.. .+|+|.. .... ..+.+..|..+++..+.+ .++|..+|.+++
T Consensus 82 ~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~ 135 (149)
T 1i3c_A 82 EIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRN--LKDLFKMVQGIE 135 (149)
T ss_dssp HHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSS--HHHHHHHHHHHH
T ss_pred HHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHH
Confidence 6643 5677654 3332 233345577899999988 999999887764
No 80
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=88.28 E-value=4.8 Score=29.78 Aligned_cols=112 Identities=9% Similarity=0.123 Sum_probs=67.2
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cC
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 289 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g 289 (377)
..+++|+.+.. .....+.......|. .|......++....+. ..|++++-..- .+.-|..+++.+. ..
T Consensus 3 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dliild~~l-~~~~g~~~~~~l~~~~~~ 75 (155)
T 1qkk_A 3 APSVFLIDDDR----DLRKAMQQTLELAGF--TVSSFASATEALAGLSADFAGIVISDIRM-PGMDGLALFRKILALDPD 75 (155)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHTCCTTCCSEEEEESCC-SSSCHHHHHHHHHHHCTT
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCc--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCC
Confidence 45677777753 356677777777665 3554443333333332 35777764331 3334566666553 46
Q ss_pred CcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhCHH
Q 017085 290 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 335 (377)
Q Consensus 290 ~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~ 335 (377)
+|+|+.. ... ..+.+..|..+++..+.+ .+++...|..++....
T Consensus 76 ~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 76 LPMILVTGHGDIPMAVQAIQDGAYDFIAKPFA--ADRLVQSARRAEEKRR 123 (155)
T ss_dssp SCEEEEECGGGHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHHHHH
Confidence 8877543 222 233344577899999888 9999999998875443
No 81
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=88.21 E-value=4.3 Score=30.21 Aligned_cols=108 Identities=7% Similarity=0.073 Sum_probs=62.6
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE-EecCcCCHHHHHH----hcCEEEecCCCCCCccchHHHHHHH---
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA----AIDVLVQNSQAWGECFGRITIEAMA--- 287 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~-~~g~~~~~~~~~~----~adv~l~ps~~~~e~~~~~~~Ea~a--- 287 (377)
.+++|+.+.. ...+.+...+++.|. .+. .....++..+.+. ..|++++-..- .+.-|..+++.+.
T Consensus 37 ~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~l~~~~~~~dliilD~~l-~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 37 FNVLIVDDSV----FTVKQLTQIFTSEGF--NIIDTAADGEEAVIKYKNHYPNIDIVTLXITM-PKMDGITCLSNIMEFD 109 (157)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGCCEEEECSSC-SSSCHHHHHHHHHHHC
T ss_pred eEEEEEeCCH----HHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHhcCCCCCEEEEeccC-CCccHHHHHHHHHhhC
Confidence 5666666642 345566666666554 233 3333344444443 34777764431 3344566665553
Q ss_pred cCCcEEEeCCC-C---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 288 FQLPVLGTAAG-G---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 288 ~g~PvI~s~~~-~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
..+|+|+.... . ..+.+..|..+++..+.+ .++|.++|.+++.
T Consensus 110 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 110 KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLD--RAKVLQRVMSVFV 156 (157)
T ss_dssp TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHTTC
T ss_pred CCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHhc
Confidence 36777754322 2 223345577889999888 9999999988764
No 82
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=88.09 E-value=5 Score=29.49 Aligned_cols=113 Identities=9% Similarity=0.075 Sum_probs=65.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc---
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~--- 288 (377)
...+++|+.+.. ...+.+....++.+....+......++..+.+.. .|++++-..- .+.-|..+++.+..
T Consensus 19 ~m~~iLivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~ 93 (150)
T 4e7p_A 19 SHMKVLVAEDQS----MLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM-PVKTGLEVLEWIRSEKL 93 (150)
T ss_dssp -CEEEEEECSCH----HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC-SSSCHHHHHHHHHHTTC
T ss_pred CccEEEEEcCCH----HHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC-CCCcHHHHHHHHHHhCC
Confidence 346677776652 3455566666554321223333333444444432 5777654331 34456666666543
Q ss_pred CCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 289 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 289 g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
.+|+|... ... ..+.+..|..+++..+.+ .+++.++|.+++..
T Consensus 94 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 94 ETKVVVVTTFKRAGYFERAVKAGVDAYVLKERS--IADLMQTLHTVLEG 140 (150)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSC--HHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCC--HHHHHHHHHHHHcC
Confidence 56776543 222 233455677899999888 99999999988763
No 83
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=87.87 E-value=5 Score=29.53 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=68.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc---
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~--- 288 (377)
...+++|+.+.. ...+.+....++.+....+......++..+.+. ..|++++-..- .+.-|..+++.+..
T Consensus 14 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 14 EKVRVVVGDDHP----LFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRM-PGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp CCEEEEEECSSH----HHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTC
T ss_pred ceEEEEEEcCCH----HHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 567778887753 355667777776653212323333344444443 36777764331 34456666666543
Q ss_pred CCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 289 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 289 g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
.+|+|... ... ..+.+..|..+++..+.+ .+++.++|.+++...
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDST--RTEIVKAVLDCAKGR 136 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCC--HHHHHHHHHHHHHCC
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCC--HHHHHHHHHHHHcCC
Confidence 56776543 322 223455678899999988 999999999988754
No 84
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=87.29 E-value=6.1 Score=28.56 Aligned_cols=110 Identities=10% Similarity=-0.018 Sum_probs=70.8
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--------cCEEEecCCCCCCccchHHHHHH
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--------IDVLVQNSQAWGECFGRITIEAM 286 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--------adv~l~ps~~~~e~~~~~~~Ea~ 286 (377)
..+++|+.+.. .....+....++.|....+.......+....+.. .|++++-..- .+.-|..+++.+
T Consensus 7 ~~~ILivdd~~----~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l-~~~~g~~~~~~l 81 (143)
T 2qvg_A 7 KVDILYLEDDE----VDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINI-PKMNGIEFLKEL 81 (143)
T ss_dssp CCSEEEECCCH----HHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTC-TTSCHHHHHHHH
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCC-CCCCHHHHHHHH
Confidence 46777887763 4567778888877764457666665666666653 6887764331 333466777776
Q ss_pred H-----cCCcEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 287 A-----FQLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 287 a-----~g~PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
. ..+|+|+. .... ..+....|..+++..+-+ .+++.+++....
T Consensus 82 ~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~L~~~~~~~~ 133 (143)
T 2qvg_A 82 RDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLD--YGEAIKLFWILQ 133 (143)
T ss_dssp TTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCC--HHHHHHHHHHHH
T ss_pred HcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCC--HHHHHHHHHHHH
Confidence 5 46777754 3222 233344577889999888 899988876543
No 85
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=87.13 E-value=6.7 Score=29.00 Aligned_cols=110 Identities=13% Similarity=0.157 Sum_probs=69.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH----
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---- 287 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---- 287 (377)
...+++|+.+.. .....+....++.|. .|......++..+.+.. .|++++-..- .+.-|..+++.+.
T Consensus 6 ~~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~ 78 (154)
T 3gt7_A 6 RAGEILIVEDSP----TQAEHLKHILEETGY--QTEHVRNGREAVRFLSLTRPDLIISDVLM-PEMDGYALCRWLKGQPD 78 (154)
T ss_dssp -CCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHTTCCCSEEEEESCC-SSSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCC
Confidence 356778887753 356677777777664 35444443444455433 5777764431 3445677777765
Q ss_pred -cCCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 288 -FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 288 -~g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
..+|+|+.. ... ..+.+..|..+++..+-+ .+++..+|.+++.
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 79 LRTIPVILLTILSDPRDVVRSLECGADDFITKPCK--DVVLASHVKRLLS 126 (154)
T ss_dssp TTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 357877543 222 223344577899999988 9999999998875
No 86
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=86.67 E-value=3.7 Score=29.74 Aligned_cols=112 Identities=8% Similarity=-0.003 Sum_probs=70.1
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHh-cCCCCcEEEecCcCCHHHHHHh---cCEEEecCCCCC-CccchHHHHHHHc-
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWG-ECFGRITIEAMAF- 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~g~~~~~~~~~~~---adv~l~ps~~~~-e~~~~~~~Ea~a~- 288 (377)
..+++|+.+.. .....+....++ .|. .|......++..+.+.. .|++++-..- . +.-|..+++.+..
T Consensus 4 ~~~ilivdd~~----~~~~~l~~~L~~~~~~--~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~~g~~~~~~l~~~ 76 (140)
T 3lua_A 4 DGTVLLIDYFE----YEREKTKIIFDNIGEY--DFIEVENLKKFYSIFKDLDSITLIIMDIAF-PVEKEGLEVLSAIRNN 76 (140)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHHCCC--EEEEECSHHHHHTTTTTCCCCSEEEECSCS-SSHHHHHHHHHHHHHS
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhccCc--cEEEECCHHHHHHHHhcCCCCcEEEEeCCC-CCCCcHHHHHHHHHhC
Confidence 45777787753 356677777777 655 35544443444444444 6888765441 2 3346666766554
Q ss_pred ----CCcEEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHHHhhCHH
Q 017085 289 ----QLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 335 (377)
Q Consensus 289 ----g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~ 335 (377)
.+|+|...... ..+.+..|..+++..+-+ .++|.++|.+++....
T Consensus 77 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 77 SRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYP--TKRLENSVRSVLKICQ 129 (140)
T ss_dssp GGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCC--TTHHHHHHHHHHCC--
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHHhcc
Confidence 68887653222 223345577899999988 9999999999887543
No 87
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=86.24 E-value=7.6 Score=27.97 Aligned_cols=109 Identities=11% Similarity=-0.005 Sum_probs=61.2
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH-----c
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----F 288 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a-----~ 288 (377)
.+++|+.+.. .....+....++. ..+.......+..+.+. ..|++++-..- .+.-|..+++.+. .
T Consensus 4 ~~iLivdd~~----~~~~~l~~~l~~~---~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 75 (140)
T 3n53_A 4 KKILIIDQQD----FSRIELKNFLDSE---YLVIESKNEKEALEQIDHHHPDLVILDMDI-IGENSPNLCLKLKRSKGLK 75 (140)
T ss_dssp CEEEEECSCH----HHHHHHHHHHTTT---SEEEEESSHHHHHHHHHHHCCSEEEEETTC-------CHHHHHHTSTTCT
T ss_pred CEEEEEeCCH----HHHHHHHHHHHhc---ceEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHcCcccC
Confidence 4666776652 3455555555543 24444443344444443 35777754331 3344666676665 4
Q ss_pred CCcEEEeC-C---CCcccceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 289 QLPVLGTA-A---GGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 289 g~PvI~s~-~---~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
++|+|... . ....+.+..|..+++..+.+ .++|..+|..++...
T Consensus 76 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 76 NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFN--RNDLLSRIEIHLRTQ 123 (140)
T ss_dssp TCCEEEEECC----CTTTTTTCCCSEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCC--HHHHHHHHHHHHhhH
Confidence 67877542 2 22334455677889999988 999999999887544
No 88
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=85.54 E-value=5.3 Score=28.80 Aligned_cols=109 Identities=11% Similarity=0.124 Sum_probs=65.2
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc--CC
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--QL 290 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~--g~ 290 (377)
..+++|+.+.. .....+....+..|. .+.......+..+.+.. .|++++-..- .+.-|..+++.+.. .+
T Consensus 4 ~~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~l~~~l~~~~~~ 76 (136)
T 2qzj_A 4 QTKILIIDGDK----DNCQKLKGFLEEKGI--SIDLAYNCEEAIGKIFSNKYDLIFLEIIL-SDGDGWTLCKKIRNVTTC 76 (136)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHCCCSEEEEESEE-TTEEHHHHHHHHHTTCCC
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHccCCCC
Confidence 45777777753 345667777766554 34444433444444433 5777753320 22345666766643 57
Q ss_pred cEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 291 PVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 291 PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
|+|... ... ..+.+..|..+++..+-+ .+++..++..++.
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 77 PIVYMTYINEDQSILNALNSGGDDYLIKPLN--LEILYAKVKAILR 120 (136)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHH
Confidence 777543 222 233445577899999988 9999999988764
No 89
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=85.43 E-value=5.7 Score=29.25 Aligned_cols=111 Identities=10% Similarity=0.078 Sum_probs=66.0
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhc-CCCCcEEEecCcCCHHHHHHh---cCEEEecCCCCCCccchHHHHHHH---
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMA--- 287 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~g~~~~~~~~~~~---adv~l~ps~~~~e~~~~~~~Ea~a--- 287 (377)
..+++|+.+.. .....+....++. |. ..+......++....+.. .|++++-..- .+.-|..+++.+.
T Consensus 3 ~~~iLivdd~~----~~~~~l~~~L~~~~g~-~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~ 76 (154)
T 2qsj_A 3 LTVVLIVDDHH----LIRAGAKNLLEGAFSG-MRVEGAETVSDALAFLEADNTVDLILLDVNL-PDAEAIDGLVRLKRFD 76 (154)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHHHCTT-EEEEEESSHHHHHHHHHTTCCCSEEEECC-------CHHHHHHHHHHC
T ss_pred ccEEEEEcCCH----HHHHHHHHHHHhCCCc-eEEEEecCHHHHHHHHhccCCCCEEEEeCCC-CCCchHHHHHHHHHhC
Confidence 46777887753 3566677777766 43 134445544556566654 6887764331 2334566666554
Q ss_pred cCCcEEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 288 FQLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 288 ~g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
.++|+|...... ..+.+..|..+++..+.+ .++|.++|..++..
T Consensus 77 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 77 PSNAVALISGETDHELIRAALEAGADGFIPKSAD--PQVLIHAVSLILEG 124 (154)
T ss_dssp TTSEEEEC-----CHHHHHHHHTTCCBBCCTTSC--HHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCC--HHHHHHHHHHHHcC
Confidence 367887643222 233344577889988887 99999999988763
No 90
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=85.37 E-value=8.2 Score=28.39 Aligned_cols=112 Identities=12% Similarity=0.128 Sum_probs=67.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---c
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---F 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~ 288 (377)
...+++|+.+.. .....+....+..|. .+.......+....+.. .|++++-..- .+.-|..+++.+. .
T Consensus 6 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (154)
T 2rjn_A 6 KNYTVMLVDDEQ----PILNSLKRLIKRLGC--NIITFTSPLDALEALKGTSVQLVISDMRM-PEMGGEVFLEQVAKSYP 78 (154)
T ss_dssp SCCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESCHHHHHHHHTTSCCSEEEEESSC-SSSCHHHHHHHHHHHCT
T ss_pred CCCeEEEEcCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHHhCC
Confidence 457788887763 356667777776654 35544444455555543 5777764331 3334556666553 3
Q ss_pred CCcEEEeC-CCC---cccceecC-cceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 289 QLPVLGTA-AGG---TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 289 g~PvI~s~-~~~---~~e~~~~~-~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
.+|+|... ... ..+.+..+ ..+++..+.+ .+++..+|..++...
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~--~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 79 DIERVVISGYADAQATIDAVNRGKISRFLLKPWE--DEDVFKVVEKGLQLA 127 (154)
T ss_dssp TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHHhccchheeeeCCCC--HHHHHHHHHHHHHHH
Confidence 67877543 222 22233344 6789999887 999999998887543
No 91
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=84.50 E-value=9.1 Score=27.36 Aligned_cols=112 Identities=12% Similarity=0.035 Sum_probs=70.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc---
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~--- 288 (377)
...+++|+.+.. .....+....++.+. .+......++..+.+. ..|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (137)
T 3hdg_A 6 VALKILIVEDDT----DAREWLSTIISNHFP--EVWSAGDGEEGERLFGLHAPDVIITDIRM-PKLGGLEMLDRIKAGGA 78 (137)
T ss_dssp -CCCEEEECSCH----HHHHHHHHHHHTTCS--CEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHTTC
T ss_pred cccEEEEEeCCH----HHHHHHHHHHHhcCc--EEEEECCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 356788888763 356667777776443 3555554445545543 36777765431 34456666666553
Q ss_pred CCcEEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 289 QLPVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 289 g~PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
.+|+|...... ..+.+..|..+++..+-+ .++|.++|.++++..
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 79 KPYVIVISAFSEMKYFIKAIELGVHLFLPKPIE--PGRLMETLEDFRHIK 126 (137)
T ss_dssp CCEEEECCCCCCHHHHHHHHHHCCSEECCSSCC--HHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCcChHHHHHHHhCCcceeEcCCCC--HHHHHHHHHHHHHHH
Confidence 57777653322 223445577889999888 999999999887543
No 92
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=84.28 E-value=9.2 Score=27.27 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=69.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh---cCEEEecCCCCCCccchHHHHHHHc--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMAF-- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~---adv~l~ps~~~~e~~~~~~~Ea~a~-- 288 (377)
...+++|+.+.. .....+....++.|. .+.......+....+.. .|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 6 ARPLVLVVDDNA----VNREALILYLKSRGI--DAVGADGAEEARLYLHYQKRIGLMITDLRM-QPESGLDLIRTIRASE 78 (136)
T ss_dssp -CCEEEEECSCH----HHHHHHHHHHHHTTC--CEEEESSHHHHHHHHHHCTTEEEEEECSCC-SSSCHHHHHHHHHTST
T ss_pred CCCeEEEECCCH----HHHHHHHHHHHHcCc--eEEEeCCHHHHHHHHHhCCCCcEEEEeccC-CCCCHHHHHHHHHhcC
Confidence 356788888763 456777777877765 35544443444444432 5777764331 34456777777654
Q ss_pred --CCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhCHH
Q 017085 289 --QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 335 (377)
Q Consensus 289 --g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~ 335 (377)
.+|+|... ... ..+.+..|..+++..+-+ .++|..+|.++.....
T Consensus 79 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 79 RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVD--LGKLLELVNKELKIGE 129 (136)
T ss_dssp TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHC---
T ss_pred CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCC--HHHHHHHHHHHhcCch
Confidence 36777543 222 233445577899999988 9999999999876543
No 93
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=83.73 E-value=11 Score=27.62 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=66.0
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh---cCEEEecCCCCCCccchHHHHHHH---c
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMA---F 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~---adv~l~ps~~~~e~~~~~~~Ea~a---~ 288 (377)
..+++|+.+.. .....+....+. + ..+.......+..+.+.. .|++++-..- .+.-|..+++.+. .
T Consensus 4 ~~~ILivdd~~----~~~~~l~~~L~~-~--~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~ 75 (151)
T 3kcn_A 4 NERILLVDDDY----SLLNTLKRNLSF-D--FEVTTCESGPEALACIKKSDPFSVIMVDMRM-PGMEGTEVIQKARLISP 75 (151)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTT-T--SEEEEESSHHHHHHHHHHSCCCSEEEEESCC-SSSCHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCH----HHHHHHHHHhcc-C--ceEEEeCCHHHHHHHHHcCCCCCEEEEeCCC-CCCcHHHHHHHHHhcCC
Confidence 45777777752 344555555543 3 245554444555555543 3887764331 3445666666554 3
Q ss_pred CCcEEEe-CCCC---cccceecC-cceeeecCCCCChhHHHHHHHHHhhCHHH
Q 017085 289 QLPVLGT-AAGG---TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHVER 336 (377)
Q Consensus 289 g~PvI~s-~~~~---~~e~~~~~-~~g~~~~~~~~~~~~la~~i~~l~~~~~~ 336 (377)
.+|+|.. .... ..+.+..| ..+++..+-+ .+++..+|..++.....
T Consensus 76 ~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 76 NSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQ--MSDIKAAINAGIKQYDL 126 (151)
T ss_dssp SCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCC--HHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCC--HHHHHHHHHHHHHHHHH
Confidence 6777654 3222 23334456 6789999988 99999999998865443
No 94
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=83.55 E-value=9.4 Score=26.82 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=66.3
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc----
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---- 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~---- 288 (377)
..+++++.+.. .....+....+..|.. .+.......+....+. ..|++++-..- .+.-|..+++.+..
T Consensus 4 ~~~ilivdd~~----~~~~~l~~~l~~~~~~-~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~l~~~l~~~~~~ 77 (128)
T 1jbe_A 4 ELKFLVVDDFS----TMRRIVRNLLKELGFN-NVEEAEDGVDALNKLQAGGYGFVISDWNM-PNMDGLELLKTIRAXXAM 77 (128)
T ss_dssp TCCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHTTCCCCEEEEESCC-SSSCHHHHHHHHHC--CC
T ss_pred ccEEEEECCCH----HHHHHHHHHHHHcCCc-EEEeeCCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhccc
Confidence 45677777752 3566677777766652 3444443344444443 35777754331 33456777777764
Q ss_pred -CCcEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 289 -QLPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 289 -g~PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
.+|+|.. .... ..+.+..|..+++..+-+ .+++.++|.+++
T Consensus 78 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~ 123 (128)
T 1jbe_A 78 SALPVLMVTAEAKKENIIAAAQAGASGYVVKPFT--AATLEEKLNKIF 123 (128)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHH
T ss_pred CCCcEEEEecCccHHHHHHHHHhCcCceeecCCC--HHHHHHHHHHHH
Confidence 5677654 3322 233344577899999888 999999998765
No 95
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=83.36 E-value=9.5 Score=26.71 Aligned_cols=107 Identities=10% Similarity=0.120 Sum_probs=62.0
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH-----cC
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA-----FQ 289 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a-----~g 289 (377)
+++++.+.. .....+....++.|. .+.......+..+.+.. .|++++-..- .+.-|..+++.+. ..
T Consensus 4 ~ILivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~al~~l~~~~~dlvllD~~~-p~~~g~~~~~~l~~~~~~~~ 76 (122)
T 3gl9_A 4 KVLLVDDSA----VLRKIVSFNLKKEGY--EVIEAENGQIALEKLSEFTPDLIVLXIMM-PVMDGFTVLKKLQEKEEWKR 76 (122)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHTTBCCSEEEECSCC-SSSCHHHHHHHHHTSTTTTT
T ss_pred eEEEEeCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHHhcCCCEEEEeccC-CCCcHHHHHHHHHhcccccC
Confidence 455565542 345556666666554 34433333344444432 5777653331 3445677777774 35
Q ss_pred CcEEEeC-CCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGTA-AGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s~-~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|... .+.. ......|..+++..|.+ .+++..++.+++.
T Consensus 77 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~--~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 77 IPVIVLTAKGGEEDESLALSLGARKVMRKPFS--PSQFIEEVKHLLN 121 (122)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred CCEEEEecCCchHHHHHHHhcChhhhccCCCC--HHHHHHHHHHHhc
Confidence 7877543 3322 22344577899999988 9999999988764
No 96
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=83.21 E-value=11 Score=27.11 Aligned_cols=111 Identities=13% Similarity=0.057 Sum_probs=65.9
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc----
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---- 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~---- 288 (377)
..+++|+.+.. .....+....++.|. .|.......+..+.+.. .|++++-..- .+.-|..+++.+..
T Consensus 4 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~lr~~~~~ 76 (136)
T 3t6k_A 4 PHTLLIVDDDD----TVAEMLELVLRGAGY--EVRRAASGEEALQQIYKNLPDALICDVLL-PGIDGYTLCKRVRQHPLT 76 (136)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHSGGG
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHcCCCc
Confidence 34666776652 345666666666654 34444333344444433 5777754331 34456677766643
Q ss_pred -CCcEEEeC-CCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 289 -QLPVLGTA-AGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 289 -g~PvI~s~-~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
.+|+|... .+.. .+.+..|..+++..+-+ .++|..+|.+++...
T Consensus 77 ~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 77 KTLPILMLTAQGDISAKIAGFEAGANDYLAKPFE--PQELVYRVKNILART 125 (136)
T ss_dssp TTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCC--HHHHHHHHHHHHHC-
T ss_pred CCccEEEEecCCCHHHHHHHHhcCcceEEeCCCC--HHHHHHHHHHHHhcc
Confidence 57877543 3322 23344577899999988 999999999887643
No 97
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=83.17 E-value=11 Score=27.33 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=63.9
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH----
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---- 287 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---- 287 (377)
...+++|+.+.. .....+....++.|. .+......++..+.+.. .|++++-..- .+.-|..+++.+.
T Consensus 13 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~m-p~~~g~~~~~~lr~~~~ 85 (143)
T 3m6m_D 13 RSMRMLVADDHE----ANRMVLQRLLEKAGH--KVLCVNGAEQVLDAMAEEDYDAVIVDLHM-PGMNGLDMLKQLRVMQA 85 (143)
T ss_dssp --CEEEEECSSH----HHHHHHHHHHHC--C--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhchh
Confidence 346777777652 345666666666653 34444433444444443 5777753321 3445667777664
Q ss_pred ---cCCcEEEeCCCCc----ccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 288 ---FQLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 288 ---~g~PvI~s~~~~~----~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
..+|+|+...... .+....|..+++..+-+ .+++.++|.++...
T Consensus 86 ~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~--~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 86 SGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVV--AAKLLDTLADLAVS 136 (143)
T ss_dssp TTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHC--
T ss_pred ccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCC--HHHHHHHHHHHHHh
Confidence 2367776543322 23344577899999988 99999999887643
No 98
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=83.11 E-value=12 Score=27.51 Aligned_cols=111 Identities=11% Similarity=0.119 Sum_probs=62.1
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---cC
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 289 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~g 289 (377)
..+++|+.+.. .....+....++.|. .|......++..+.+.. .|++++-..- .+.-|..+++.+. ..
T Consensus 14 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~ 86 (153)
T 3hv2_A 14 RPEILLVDSQE----VILQRLQQLLSPLPY--TLHFARDATQALQLLASREVDLVISAAHL-PQMDGPTLLARIHQQYPS 86 (153)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTTSSC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHHCTT
T ss_pred CceEEEECCCH----HHHHHHHHHhcccCc--EEEEECCHHHHHHHHHcCCCCEEEEeCCC-CcCcHHHHHHHHHhHCCC
Confidence 34566666542 244555555555543 34444333344444433 4676654331 3444566665554 46
Q ss_pred CcEEEeCCCC----cccceecC-cceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 290 LPVLGTAAGG----TTEIVVNG-TTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 290 ~PvI~s~~~~----~~e~~~~~-~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
+|+|...... ..+.+..| ..+++..+-+ .++|..+|.+++...
T Consensus 87 ~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~--~~~l~~~i~~~l~~~ 134 (153)
T 3hv2_A 87 TTRILLTGDPDLKLIAKAINEGEIYRYLSKPWD--DQELLLALRQALEHQ 134 (153)
T ss_dssp SEEEEECCCCCHHHHHHHHHTTCCSEEECSSCC--HHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHhCCCcceEEeCCCC--HHHHHHHHHHHHHHh
Confidence 7777553322 22334445 6789999888 999999999887543
No 99
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=83.07 E-value=9.9 Score=26.68 Aligned_cols=109 Identities=12% Similarity=0.171 Sum_probs=65.5
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---cC
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 289 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~g 289 (377)
+.+++++.+.. .....+.......|. .+.......+..+.+.. .|++++-..- ...-|..+++.+. ..
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~ 75 (126)
T 1dbw_A 3 DYTVHIVDDEE----PVRKSLAFMLTMNGF--AVKMHQSAEAFLAFAPDVRNGVLVTDLRM-PDMSGVELLRNLGDLKIN 75 (126)
T ss_dssp CCEEEEEESSH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHGGGCCSEEEEEECCS-TTSCHHHHHHHHHHTTCC
T ss_pred CCEEEEEcCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHhcCCC
Confidence 35677777753 356667777776654 34444433444444443 5777653320 2334566666654 36
Q ss_pred CcEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|.. .... ..+.+..|..+++..+.+ .+++.++|.+++.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 76 IPSIVITGHGDVPMAVEAMKAGAVDFIEKPFE--DTVIIEAIERASE 120 (126)
T ss_dssp CCEEEEECTTCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHhCHHHheeCCCC--HHHHHHHHHHHHH
Confidence 787754 3332 233345577899999988 9999999988764
No 100
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=83.06 E-value=10 Score=26.78 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc---
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~--- 288 (377)
...+++|+.+.. .....+....++.|. .+......++..+.+.. .|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~ 78 (130)
T 3eod_A 6 VGKQILIVEDEQ----VFRSLLDSWFSSLGA--TTVLAADGVDALELLGGFTPDLMICDIAM-PRMNGLKLLEHIRNRGD 78 (130)
T ss_dssp TTCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHTTCCCSEEEECCC------CHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHhCCc--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHhcCC
Confidence 456788887753 356677777777764 35444433444455533 5777764331 34456667766543
Q ss_pred CCcEEEeC-CCC---cccceecCcceeeecCC-CCChhHHHHHHHHHhhC
Q 017085 289 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 333 (377)
Q Consensus 289 g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~-~~~~~~la~~i~~l~~~ 333 (377)
.+|+|... ... ..+.+..|..+++..|- + .+.+.+++.+++..
T Consensus 79 ~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~--~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 79 QTPVLVISATENMADIAKALRLGVEDVLLKPVKD--LNRLREMVFACLYP 126 (130)
T ss_dssp CCCEEEEECCCCHHHHHHHHHHCCSEEEESCC-----CHHHHHHHHHHC-
T ss_pred CCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCc--HHHHHHHHHHHhch
Confidence 56776543 222 23345567888999987 6 89999999988754
No 101
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=82.68 E-value=11 Score=27.00 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=70.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHh-cCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF-- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~-- 288 (377)
...+++|+.+.. .....+....++ .|.. .+......++....+.. .|++++-..- .+.-|..+++.+..
T Consensus 7 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~ 80 (143)
T 3cnb_A 7 NDFSILIIEDDK----EFADMLTQFLENLFPYA-KIKIAYNPFDAGDLLHTVKPDVVMLDLMM-VGMDGFSICHRIKSTP 80 (143)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHHCTTC-EEEEECSHHHHHHHHHHTCCSEEEEETTC-TTSCHHHHHHHHHTST
T ss_pred CCceEEEEECCH----HHHHHHHHHHHhccCcc-EEEEECCHHHHHHHHHhcCCCEEEEeccc-CCCcHHHHHHHHHhCc
Confidence 456788887753 356677777777 6652 25555544555555543 6777765431 33456677777654
Q ss_pred ---CCcEEEe-CCCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 289 ---QLPVLGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 289 ---g~PvI~s-~~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
.+|+|+. ..... .+.+..|..+++..+.+ .++|..+|.+++..
T Consensus 81 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 81 ATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLN--FTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHT
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCC--HHHHHHHHHHHHHh
Confidence 5677754 33322 33344577889999887 99999999988753
No 102
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=82.50 E-value=12 Score=27.25 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=69.4
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH----
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---- 287 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---- 287 (377)
.+.+++||-+.. ..+.-+....++.|.. .+.....-.+..+.+.. .|++++=-. -.+.-|..+++.+-
T Consensus 11 k~~rILiVDD~~----~~r~~l~~~L~~~G~~-~v~~a~~g~~al~~~~~~~~DlillD~~-MP~mdG~el~~~ir~~~~ 84 (134)
T 3to5_A 11 KNMKILIVDDFS----TMRRIVKNLLRDLGFN-NTQEADDGLTALPMLKKGDFDFVVTDWN-MPGMQGIDLLKNIRADEE 84 (134)
T ss_dssp TTCCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHCCSEEEEESC-CSSSCHHHHHHHHHHSTT
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHHcCCc-EEEEECCHHHHHHHHHhCCCCEEEEcCC-CCCCCHHHHHHHHHhCCC
Confidence 457788887653 4567777788888764 34433332333444433 577774222 02335777777774
Q ss_pred -cCCcEEEeC-CCCcc---cceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 288 -FQLPVLGTA-AGGTT---EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 288 -~g~PvI~s~-~~~~~---e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
..+|||.-. .+... +....|.++++..|-+ .++|.++|.++++
T Consensus 85 ~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~--~~~L~~~i~~~l~ 132 (134)
T 3to5_A 85 LKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFT--AATLKEKLDKIFE 132 (134)
T ss_dssp TTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHCC
T ss_pred CCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHh
Confidence 468888543 33322 2344578899999988 9999999988763
No 103
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=82.33 E-value=7.2 Score=26.72 Aligned_cols=107 Identities=8% Similarity=0.065 Sum_probs=63.2
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH-----cC
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 289 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a-----~g 289 (377)
+++++.+.. .....+....+..|. .+......++....+. ..|++++-... .+.-|..+++.+. ..
T Consensus 3 ~iliv~~~~----~~~~~l~~~l~~~g~--~v~~~~~~~~~~~~l~~~~~dlii~d~~~-~~~~~~~~~~~l~~~~~~~~ 75 (119)
T 2j48_A 3 HILLLEEED----EAATVVCEMLTAAGF--KVIWLVDGSTALDQLDLLQPIVILMAWPP-PDQSCLLLLQHLREHQADPH 75 (119)
T ss_dssp EEEEECCCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHHCCSEEEEECST-TCCTHHHHHHHHHHTCCCSS
T ss_pred EEEEEeCCH----HHHHHHHHHHHhCCc--EEEEecCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhccccCC
Confidence 456666652 355667777776664 4554444344444443 35777754331 3344666777765 45
Q ss_pred CcEEEe-CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s-~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|.. +.....+....|..+++..+-+ .+++...+.+++.
T Consensus 76 ~~ii~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~ 117 (119)
T 2j48_A 76 PPLVLFLGEPPVDPLLTAQASAILSKPLD--PQLLLTTLQGLCP 117 (119)
T ss_dssp CCCEEEESSCCSSHHHHHHCSEECSSCST--THHHHHHHHTTCC
T ss_pred CCEEEEeCCCCchhhhhcCHHHhccCCCC--HHHHHHHHHHHhc
Confidence 776653 3322224555567788888877 8999988876653
No 104
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=82.04 E-value=11 Score=26.46 Aligned_cols=110 Identities=8% Similarity=0.045 Sum_probs=66.5
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc----
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---- 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~---- 288 (377)
..+++|+.+.. .....+....++.|. .|......++..+.+.. .|++++-..- .+.-|..+++.+..
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~ 75 (127)
T 3i42_A 3 LQQALIVEDYQ----AAAETFKELLEMLGF--QADYVMSGTDALHAMSTRGYDAVFIDLNL-PDTSGLALVKQLRALPME 75 (127)
T ss_dssp CEEEEEECSCH----HHHHHHHHHHHHTTE--EEEEESSHHHHHHHHHHSCCSEEEEESBC-SSSBHHHHHHHHHHSCCS
T ss_pred cceEEEEcCCH----HHHHHHHHHHHHcCC--CEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhhcc
Confidence 35677777753 356677777777765 35544444455455543 5777654331 34456677776643
Q ss_pred -CCcEEEeC-CCC--cccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 289 -QLPVLGTA-AGG--TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 289 -g~PvI~s~-~~~--~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
.+|+|... ... ....+..|..+++..|-+ .++|.+++......
T Consensus 76 ~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 76 KTSKFVAVSGFAKNDLGKEACELFDFYLEKPID--IASLEPILQSIEGH 122 (127)
T ss_dssp SCCEEEEEECC-CTTCCHHHHHHCSEEEESSCC--HHHHHHHHHHHC--
T ss_pred CCCCEEEEECCcchhHHHHHHHhhHHheeCCCC--HHHHHHHHHHhhcc
Confidence 47777542 221 133444567889999988 99999999887654
No 105
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=81.96 E-value=11 Score=26.54 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH---hcCEEEecCCCCCC-ccchHHHHHHH--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---AIDVLVQNSQAWGE-CFGRITIEAMA-- 287 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~---~adv~l~ps~~~~e-~~~~~~~Ea~a-- 287 (377)
...+++|+.+.. .....+.......|. .+......++..+.+. ..|++++-..- .+ .-|..+++.+.
T Consensus 4 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l-~~~~~g~~~~~~l~~~ 76 (132)
T 2rdm_A 4 EAVTILLADDEA----ILLLDFESTLTDAGF--LVTAVSSGAKAIEMLKSGAAIDGVVTDIRF-CQPPDGWQVARVAREI 76 (132)
T ss_dssp SSCEEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCCCEEEEESCC-SSSSCHHHHHHHHHHH
T ss_pred CCceEEEEcCcH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHHcCCCCCEEEEeeeC-CCCCCHHHHHHHHHhc
Confidence 346778887753 356667777776665 3544444345555554 35887764431 22 34566666554
Q ss_pred -cCCcEEEe-CCCCcc---cceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 288 -FQLPVLGT-AAGGTT---EIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 288 -~g~PvI~s-~~~~~~---e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
..+|+|.. ...... ..+.. .+++..+-+ .+++..+|.+++..
T Consensus 77 ~~~~~ii~~s~~~~~~~~~~~~~~--~~~l~kP~~--~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 77 DPNMPIVYISGHAALEWASNGVPD--SIILEKPFT--SAQLITAVSQLLNA 123 (132)
T ss_dssp CTTCCEEEEESSCCTTHHHHSCTT--CEEEESSCC--HHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCccHHHHHhhcCC--cceEeCCCC--HHHHHHHHHHHHhc
Confidence 36787754 322221 11212 268888887 99999999888763
No 106
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=81.75 E-value=10 Score=26.47 Aligned_cols=108 Identities=11% Similarity=0.083 Sum_probs=66.2
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCC-CccchHHHHHHH-----
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWG-ECFGRITIEAMA----- 287 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~-e~~~~~~~Ea~a----- 287 (377)
.+++++.+.. .....+....++.|. .+.......+..+.+. ..|++++-..- . ..-|..+++.+.
T Consensus 6 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvi~d~~~-~~~~~g~~~~~~l~~~~~~ 78 (127)
T 2gkg_A 6 KKILIVESDT----ALSATLRSALEGRGF--TVDETTDGKGSVEQIRRDRPDLVVLAVDL-SAGQNGYLICGKLKKDDDL 78 (127)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHHTC--EEEEECCHHHHHHHHHHHCCSEEEEESBC-GGGCBHHHHHHHHHHSTTT
T ss_pred CeEEEEeCCH----HHHHHHHHHHHhcCc--eEEEecCHHHHHHHHHhcCCCEEEEeCCC-CCCCCHHHHHHHHhcCccc
Confidence 4667777652 356667777776665 3544444344444443 35777754331 2 334566776664
Q ss_pred cCCcEEEeCCCCc----ccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 288 FQLPVLGTAAGGT----TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 288 ~g~PvI~s~~~~~----~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
..+|+|.. .... .+....|..+++..+-+ .+++...|.+++..
T Consensus 79 ~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 79 KNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVD--ADQLVERAGALIGF 125 (127)
T ss_dssp TTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCC--HHHHHHHHHHHHCC
T ss_pred cCCCEEEE-ecCCchhHHHHHHhCcchheeCCCC--HHHHHHHHHHHHcC
Confidence 46888876 3322 23344567889999887 99999999887653
No 107
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=81.39 E-value=11 Score=27.06 Aligned_cols=111 Identities=10% Similarity=0.056 Sum_probs=66.4
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---cC
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 289 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~g 289 (377)
..+++|+.+.. .....+....++.|. .+.......+..+.+.. .|++++-.. .+.-|..+++.+. ..
T Consensus 4 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~--~~~~g~~~~~~l~~~~~~ 75 (142)
T 2qxy_A 4 TPTVMVVDESR----ITFLAVKNALEKDGF--NVIWAKNEQEAFTFLRREKIDLVFVDVF--EGEESLNLIRRIREEFPD 75 (142)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHGGGTC--EEEEESSHHHHHHHHTTSCCSEEEEECT--TTHHHHHHHHHHHHHCTT
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhccCCCEEEEeCC--CCCcHHHHHHHHHHHCCC
Confidence 45677777653 356667777776664 35544443444444433 577765432 3434555565553 35
Q ss_pred CcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhCHH
Q 017085 290 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 335 (377)
Q Consensus 290 ~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~ 335 (377)
+|+|... ... ..+....|..+++..+.+ .++|..+|.+++....
T Consensus 76 ~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 76 TKVAVLSAYVDKDLIINSVKAGAVDYILKPFR--LDYLLERVKKIISSTP 123 (142)
T ss_dssp CEEEEEESCCCHHHHHHHHHHTCSCEEESSCC--HHHHHHHHHHHHHC--
T ss_pred CCEEEEECCCCHHHHHHHHHCCcceeEeCCCC--HHHHHHHHHHHHhhcc
Confidence 7877543 322 223344577889999887 9999999999886543
No 108
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=80.65 E-value=13 Score=26.46 Aligned_cols=109 Identities=11% Similarity=0.183 Sum_probs=64.4
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh-------cCEEEecCCCCCCccchHHHHHHHc
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEAMAF 288 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~-------adv~l~ps~~~~e~~~~~~~Ea~a~ 288 (377)
.+++|+.+.. .....+....+..|.. .+.......+..+.+.. .|++++=..- .+.-|..+++.+..
T Consensus 3 ~~ILivdD~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~m-p~~~G~~~~~~lr~ 76 (133)
T 2r25_B 3 VKILVVEDNH----VNQEVIKRMLNLEGIE-NIELACDGQEAFDKVKELTSKGENYNMIFMDVQM-PKVDGLLSTKMIRR 76 (133)
T ss_dssp SCEEEECSCH----HHHHHHHHHHHHTTCC-CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCC-SSSCHHHHHHHHHH
T ss_pred ceEEEEcCCH----HHHHHHHHHHHHcCCc-eEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCC-CCCChHHHHHHHHh
Confidence 3566666652 3456667777665543 34444433344444433 5887754330 23346666766642
Q ss_pred ----CCcEEEe-CCCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 ----QLPVLGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 ----g~PvI~s-~~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
..|+|.. ..... .+....|..+++..|-+ .+++.++|.+++.
T Consensus 77 ~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~ 126 (133)
T 2r25_B 77 DLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIK--RPKLKTILTEFCA 126 (133)
T ss_dssp HSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHCT
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Confidence 4677754 33332 23344577899999988 9999999988764
No 109
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=80.50 E-value=11 Score=26.24 Aligned_cols=76 Identities=14% Similarity=0.338 Sum_probs=48.3
Q ss_pred eEEE-EEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHH--cCCcE
Q 017085 216 VHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--FQLPV 292 (377)
Q Consensus 216 ~~l~-i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a--~g~Pv 292 (377)
.+++ ++|.|.... -..+++++.+++.|++-.|...+. .++...+..+|+++.... .. +-..-++..+ .++||
T Consensus 5 mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~-~~~~~~~~~~D~Ii~t~~--l~-~~~~~~~~~~~~~~~pv 79 (109)
T 2l2q_A 5 MNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAE-TRLSEVVDRFDVVLLAPQ--SR-FNKKRLEEITKPKGIPI 79 (109)
T ss_dssp EEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECS-TTHHHHTTTCSEEEECSC--CS-SHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecH-HHHHhhcCCCCEEEECCc--cH-HHHHHHHHHhcccCCCE
Confidence 4544 456665555 577899999999988644544443 577777889999887654 21 1123333332 58999
Q ss_pred EEeC
Q 017085 293 LGTA 296 (377)
Q Consensus 293 I~s~ 296 (377)
+.-+
T Consensus 80 ~~I~ 83 (109)
T 2l2q_A 80 EIIN 83 (109)
T ss_dssp EECC
T ss_pred EEEC
Confidence 8754
No 110
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=80.28 E-value=5.5 Score=29.02 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=63.3
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcC-CCCcEEEecCc-CCHHHHH---HhcCEEEecCCCCCCccchHHHHHHHc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKT-LTVAPYL---AAIDVLVQNSQAWGECFGRITIEAMAF 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~g~~-~~~~~~~---~~adv~l~ps~~~~e~~~~~~~Ea~a~ 288 (377)
+..+++|+.+.. .....+...+++.| . .+...... +.+..+. ...|++++-..- .+.-|..+++.+..
T Consensus 19 ~~~~ilivdd~~----~~~~~l~~~L~~~g~~--~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~ 91 (146)
T 4dad_A 19 GMINILVASEDA----SRLAHLARLVGDAGRY--RVTRTVGRAAQIVQRTDGLDAFDILMIDGAA-LDTAELAAIEKLSR 91 (146)
T ss_dssp GGCEEEEECSCH----HHHHHHHHHHHHHCSC--EEEEECCCHHHHTTCHHHHTTCSEEEEECTT-CCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHhhCCCe--EEEEeCCHHHHHHHHHhcCCCCCEEEEeCCC-CCccHHHHHHHHHH
Confidence 356777776652 34566666666665 3 23333322 2222222 346777764331 33345556655543
Q ss_pred ---CCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 ---QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 ---g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.+|+|.-. ... ..+.+..|..+++..+-+ .++|..+|.+++.
T Consensus 92 ~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 140 (146)
T 4dad_A 92 LHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLE--PRALDDALKRAAA 140 (146)
T ss_dssp HCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCC--HHHHHHHHHHHHH
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCC--HHHHHHHHHHHHh
Confidence 57777543 222 223345577889999888 9999999988765
No 111
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=79.98 E-value=13 Score=25.88 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=61.2
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc-----C
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF-----Q 289 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~-----g 289 (377)
+++|+.+.. .....+....+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+.. .
T Consensus 3 ~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ 75 (124)
T 1mb3_A 3 KVLIVEDNE----LNMKLFHDLLEAQGY--ETLQTREGLSALSIARENKPDLILMDIQL-PEISGLEVTKWLKEDDDLAH 75 (124)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESCHHHHHHHHHHHCCSEEEEESBC-SSSBHHHHHHHHHHSTTTTT
T ss_pred EEEEEcCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHcCccccC
Confidence 455666542 345666666666554 2433332233333333 35777753321 23346667776653 5
Q ss_pred CcEEEeCC-C---CcccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGTAA-G---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s~~-~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|.... . ...+....|..+++..+-+ .+++..++.+++.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 76 IPVVAVTAFAMKGDEERIREGGCEAYISKPIS--VVHFLETIKRLLE 120 (124)
T ss_dssp SCEEEEC------CHHHHHHHTCSEEECSSCC--HHHHHHHHHHHHS
T ss_pred CcEEEEECCCCHHHHHHHHhCCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 78775432 2 2233344577899999887 9999999988764
No 112
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=79.79 E-value=9.8 Score=32.92 Aligned_cols=95 Identities=17% Similarity=0.097 Sum_probs=60.2
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
+.-+.++.+|- ..-|....+.++.. .++++++-+.+. ..+..++.+++++++. . .
T Consensus 21 ~~mirigiIG~--G~ig~~~~~~~~~~-----------~~~~~lvav~d~------~~~~a~~~a~~~g~~~---~---y 75 (350)
T 4had_A 21 QSMLRFGIIST--AKIGRDNVVPAIQD-----------AENCVVTAIASR------DLTRAREMADRFSVPH---A---F 75 (350)
T ss_dssp -CCEEEEEESC--CHHHHHTHHHHHHH-----------CSSEEEEEEECS------SHHHHHHHHHHHTCSE---E---E
T ss_pred cCccEEEEEcC--hHHHHHHHHHHHHh-----------CCCeEEEEEECC------CHHHHHHHHHHcCCCe---e---e
Confidence 34467888873 22222334555542 278888766554 2466777888887641 1 1
Q ss_pred CCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 255 LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 255 ~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++.++++. .|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 76 ~d~~ell~~~~iDaV~I~tP--~~~H~~~~~~al~aGkhVl~EK 117 (350)
T 4had_A 76 GSYEEMLASDVIDAVYIPLP--TSQHIEWSIKAADAGKHVVCEK 117 (350)
T ss_dssp SSHHHHHHCSSCSEEEECSC--GGGHHHHHHHHHHTTCEEEECS
T ss_pred CCHHHHhcCCCCCEEEEeCC--CchhHHHHHHHHhcCCEEEEeC
Confidence 567788865 688887775 3433456789999999999864
No 113
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=79.76 E-value=13 Score=26.59 Aligned_cols=111 Identities=10% Similarity=0.117 Sum_probs=67.1
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCC-----CccchHHHHHHH
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWG-----ECFGRITIEAMA 287 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~-----e~~~~~~~Ea~a 287 (377)
..+++|+.+.. .....+...+++.|. .+.......+..+.+.. .|++++-..- . +.-|..+++.+.
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~d~~~-~~~~~~~~~g~~~~~~l~ 75 (140)
T 2qr3_A 3 LGTIIIVDDNK----GVLTAVQLLLKNHFS--KVITLSSPVSLSTVLREENPEVVLLDMNF-TSGINNGNEGLFWLHEIK 75 (140)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTTTSS--EEEEECCHHHHHHHHHHSCEEEEEEETTT-TC-----CCHHHHHHHHH
T ss_pred CceEEEEeCCH----HHHHHHHHHHHhCCc--EEEEeCCHHHHHHHHHcCCCCEEEEeCCc-CCCCCCCccHHHHHHHHH
Confidence 35677777753 356667777766654 35544444455555544 5777654331 2 334555665554
Q ss_pred ---cCCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 288 ---FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 288 ---~g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
..+|+|... ... ..+.+..|..+++..+.+ .+++.++|.+++...
T Consensus 76 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 76 RQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWD--NQKLLETLLNAASQA 127 (140)
T ss_dssp HHCTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCC--HHHHHHHHHHHHTCC
T ss_pred hhCcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCC--HHHHHHHHHHHHHhc
Confidence 467877542 222 233344577889999888 999999999887643
No 114
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=79.57 E-value=14 Score=26.30 Aligned_cols=111 Identities=12% Similarity=-0.000 Sum_probs=64.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh---cCEEEecCCCCCCccchHHHHHHHc--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMAF-- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~---adv~l~ps~~~~e~~~~~~~Ea~a~-- 288 (377)
+..+++++.+.. .....+...++..|. .+.......+....+.. .|++++-..- .+.-|..+++.+..
T Consensus 14 ~~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~dlvilD~~l-~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 14 QPFRVTLVEDEP----SHATLIQYHLNQLGA--EVTVHPSGSAFFQHRSQLSTCDLLIVSDQL-VDLSIFSLLDIVKEQT 86 (138)
T ss_dssp CCCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHTGGGGGSCSEEEEETTC-TTSCHHHHHHHHTTSS
T ss_pred CCCeEEEECCCH----HHHHHHHHHHHHcCC--EEEEeCCHHHHHHHHHhCCCCCEEEEeCCC-CCCCHHHHHHHHHhhC
Confidence 567777777753 345666777776654 35444433444444433 6877764331 33346677777754
Q ss_pred -CCcEEEe--CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 289 -QLPVLGT--AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 289 -g~PvI~s--~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
.+|+|.. ....... ...-..+++..+-+ .+++...|..++...
T Consensus 87 ~~~~ii~ls~~~~~~~~-~~~~~~~~l~KP~~--~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE-SSEHNLSYLQKPFA--ISELRAAIDYHKPSM 132 (138)
T ss_dssp SCCEEEEEESCC--CCC-CSSSCEEEEESSCC--HHHHHHHHHHTCCC-
T ss_pred CCCCEEEEECCCCCHHH-HHHHHHheeeCCCC--HHHHHHHHHHHHHhc
Confidence 5676643 3222211 11115788888887 999999998887644
No 115
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=79.50 E-value=22 Score=28.44 Aligned_cols=108 Identities=7% Similarity=0.034 Sum_probs=67.8
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc--CCc
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--QLP 291 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~--g~P 291 (377)
.+++|+.+.. .....+....+..|. .|.......+..+.+. ..|++++-..- .+.-|..+++.+.. ++|
T Consensus 6 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvilD~~l-~~~~g~~~~~~lr~~~~~~ 78 (238)
T 2gwr_A 6 QRILVVDDDA----SLAEMLTIVLRGEGF--DTAVIGDGTQALTAVRELRPDLVLLDLML-PGMNGIDVCRVLRADSGVP 78 (238)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHTTCCCC
T ss_pred CeEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhCCCCc
Confidence 4677777753 356667777776654 3555544455555554 35777754331 33346666766643 688
Q ss_pred EEEeC-CC---CcccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 292 VLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 292 vI~s~-~~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|.-. .. ...+.+..|..|++..+.+ .++|..+|..++.
T Consensus 79 ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 79 IVMLTAKTDTVDVVLGLESGADDYIMKPFK--PKELVARVRARLR 121 (238)
T ss_dssp EEEEEETTCCSCHHHHHHTTCCEEEEESCC--HHHHHHHHHHHCC
T ss_pred EEEEeCCCCHHHHHHHHHCCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 77542 22 2334455678899999988 9999999998865
No 116
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=79.42 E-value=14 Score=25.96 Aligned_cols=110 Identities=10% Similarity=0.091 Sum_probs=65.8
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc----
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---- 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~---- 288 (377)
..+++++.+.. .....+....+..|.. .+......++....+.. .|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~~-~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~ 79 (129)
T 1p6q_A 6 KIKVLIVDDQV----TSRLLLGDALQQLGFK-QITAAGDGEQGMKIMAQNPHHLVISDFNM-PKMDGLGLLQAVRANPAT 79 (129)
T ss_dssp CCCEEEECSSH----HHHHHHHHHHHTTTCS-CEECCSSHHHHHHHHHTSCCSEEEECSSS-CSSCHHHHHHHHTTCTTS
T ss_pred cCeEEEEcCCH----HHHHHHHHHHHHCCCc-EEEecCCHHHHHHHHHcCCCCEEEEeCCC-CCCCHHHHHHHHhcCccc
Confidence 35677777752 3466677777766542 34444433444444443 5777754331 23346677777743
Q ss_pred -CCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 -QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 -g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.+|+|... .+. ..+.+..|..+++..+.+ .+++..+|.+++.
T Consensus 80 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 80 KKAAFIILTAQGDRALVQKAAALGANNVLAKPFT--IEKMKAAIEAVFG 126 (129)
T ss_dssp TTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSS--HHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHH
Confidence 56777543 222 123344577889999887 9999999987653
No 117
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=79.31 E-value=7.3 Score=27.88 Aligned_cols=111 Identities=8% Similarity=0.047 Sum_probs=64.4
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH-hcCEEEecCCCCCCccchHHHHHHHc----
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAF---- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~-~adv~l~ps~~~~e~~~~~~~Ea~a~---- 288 (377)
...+++++.+.. .....+....+..|. .|.......+..+.+. ..|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~dlvllD~~l-p~~~g~~~~~~l~~~~~~ 78 (136)
T 1dcf_A 6 TGLKVLVMDENG----VSRMVTKGLLVHLGC--EVTTVSSNEECLRVVSHEHKVVFMDVCM-PGVENYQIALRIHEKFTK 78 (136)
T ss_dssp TTCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHCCTTCSEEEEECCS-STTTTTHHHHHHHHHHC-
T ss_pred CCCeEEEEeCCH----HHHHHHHHHHHHcCC--eEEEeCCHHHHHHHHhccCCEEEEeCCC-CCCcHHHHHHHHHHhhhh
Confidence 356778887753 345667777776654 3444333333333332 23887753321 23345566666541
Q ss_pred ---CCc-EE-EeCCCCcc---cceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 289 ---QLP-VL-GTAAGGTT---EIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 289 ---g~P-vI-~s~~~~~~---e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
..| +| .|...... +....|..+++..|-+ .+++.+++.+++..
T Consensus 79 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 79 QRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVS--LDNIRDVLSDLLEP 129 (136)
T ss_dssp CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHSC
T ss_pred ccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCC--HHHHHHHHHHHhch
Confidence 344 44 45444322 2344577899999988 99999999887653
No 118
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=78.60 E-value=15 Score=25.96 Aligned_cols=109 Identities=12% Similarity=0.140 Sum_probs=66.9
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE-EecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc---C
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---Q 289 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~-~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~---g 289 (377)
++++|+.+.. .....+....++.|. .+. .....++....+. ..|++++-..- .+.-|..+++.+.. .
T Consensus 2 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~ 74 (134)
T 3f6c_A 2 LNAIIIDDHP----LAIAAIRNLLIKNDI--EILAELTEGGSAVQRVETLKPDIVIIDVDI-PGVNGIQVLETLRKRQYS 74 (134)
T ss_dssp EEEEEECCCH----HHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCC
T ss_pred eEEEEEcCCH----HHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHHhcCCCEEEEecCC-CCCChHHHHHHHHhcCCC
Confidence 4667777653 356677777777653 333 3344455555553 36777764431 34456666666543 5
Q ss_pred CcEEEe-CCC---CcccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 290 LPVLGT-AAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 290 ~PvI~s-~~~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
+|+|.. ... ...+....|..+++..+-+ .+++.++|..++..
T Consensus 75 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 75 GIIIIVSAKNDHFYGKHCADAGANGFVSKKEG--MNNIIAAIEAAKNG 120 (134)
T ss_dssp SEEEEEECC---CTHHHHHHTTCSEEEEGGGC--THHHHHHHHHHHTT
T ss_pred CeEEEEeCCCChHHHHHHHHhCCCEEEeCCCC--HHHHHHHHHHHHCC
Confidence 666653 222 2334455677899999887 99999999988753
No 119
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=78.28 E-value=22 Score=30.85 Aligned_cols=72 Identities=13% Similarity=0.068 Sum_probs=47.3
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+. ..+..++.+++++++..+... .++.+++. .+|+++..+. .....-.+.+|+..|++
T Consensus 29 ~~~~lv~v~d~------~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 97 (362)
T 1ydw_A 29 PNATISGVASR------SLEKAKAFATANNYPESTKIH---GSYESLLEDPEIDALYVPLP--TSLHVEWAIKAAEKGKH 97 (362)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHTTTCE
T ss_pred CCcEEEEEEcC------CHHHHHHHHHHhCCCCCCeee---CCHHHHhcCCCCCEEEEcCC--hHHHHHHHHHHHHCCCe
Confidence 67887755553 234556677777753222222 46777776 5899888775 44444566789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 98 V~~EK 102 (362)
T 1ydw_A 98 ILLEK 102 (362)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99854
No 120
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=78.07 E-value=22 Score=27.59 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=62.8
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE-EecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc--CC
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--QL 290 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~-~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~--g~ 290 (377)
.+++|+.+.. .....+.......|. .+. ......+....+. ..|++++-..- .+.-|..+++.+.. ..
T Consensus 14 ~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~~~~~~~dlvi~D~~~-p~~~g~~~~~~l~~~~~~ 86 (205)
T 1s8n_A 14 RRVLIAEDEA----LIRMDLAEMLREEGY--EIVGEAGDGQEAVELAELHKPDLVIMDVKM-PRRDGIDAASEIASKRIA 86 (205)
T ss_dssp CEEEEECSSH----HHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHTTCS
T ss_pred ccEEEEECCH----HHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHhhcCCCEEEEeCCC-CCCChHHHHHHHHhcCCC
Confidence 4667776652 345566666666554 233 3333233334433 35777653321 23345666666543 34
Q ss_pred cEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 291 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 291 PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
|+|.. .... ..+.+..|..+++..|-+ .++|..+|..++...
T Consensus 87 pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 87 PIVVLTAFSQRDLVERARDAGAMAYLVKPFS--ISDLIPAIELAVSRF 132 (205)
T ss_dssp CEEEEEEGGGHHHHHTTGGGSCEEEEEESCC--HHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCcEEEeCCCC--HHHHHHHHHHHHHHH
Confidence 66643 2222 233455677889999988 999999999887644
No 121
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=76.96 E-value=21 Score=27.96 Aligned_cols=111 Identities=12% Similarity=0.191 Sum_probs=61.1
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH---------------hcCEEEecCCCCCCccc
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA---------------AIDVLVQNSQAWGECFG 279 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~---------------~adv~l~ps~~~~e~~~ 279 (377)
+.+++|+.+.. .....+...+++.|.. .|.......+..+++. ..|++++=..- .+.-|
T Consensus 61 ~~~ILiVdDd~----~~~~~l~~~L~~~g~~-~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~l-p~~~G 134 (206)
T 3mm4_A 61 GKRVLVVDDNF----ISRKVATGKLKKMGVS-EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQM-PEMDG 134 (206)
T ss_dssp TCEEEEECSCH----HHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCC-SSSCH
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHHcCCC-eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCC-CCCCH
Confidence 45666666642 3455566666666542 3444444344444443 35777754331 33446
Q ss_pred hHHHHHHH-------cCCcEEEeC-CC-C---cccceecCcceeeecCCCCChhHHHHHHHHHhhCHH
Q 017085 280 RITIEAMA-------FQLPVLGTA-AG-G---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 335 (377)
Q Consensus 280 ~~~~Ea~a-------~g~PvI~s~-~~-~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~ 335 (377)
..+++.+. ..+|||+.. .. . ..+.+..|..+++..+- ++|.++|.+++....
T Consensus 135 ~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~----~~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 135 YEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSL----NQLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTC----TTHHHHHHHHC----
T ss_pred HHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcH----HHHHHHHHHHHhhhH
Confidence 66666654 457877543 22 2 22334457788998863 489999988876543
No 122
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=76.73 E-value=13 Score=30.06 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCC--CcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEe
Q 017085 192 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 269 (377)
Q Consensus 192 ~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~--~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ 269 (377)
++.+.+++..+.+ ..-++.++.-+. .+...+...+.+..+++|. .+..+-..++..+.+..||.+++
T Consensus 17 l~~~~~~l~~~~~---------~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~--~~~~v~~~~d~~~~l~~ad~I~l 85 (229)
T 1fy2_A 17 LEHALPLIANQLN---------GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGV--NVTGIHRVADPLAAIEKAEIIIV 85 (229)
T ss_dssp TTTTHHHHHHHHT---------TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTC--EEEETTSSSCHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHhc---------CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCC--EEEEEeccccHHHHHhcCCEEEE
Confidence 4444556655433 345677776542 2222356667777788875 35444333566688899999999
Q ss_pred cCCC--------CCCccchHHHHHHHcCCcEEEeCCC
Q 017085 270 NSQA--------WGECFGRITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 270 ps~~--------~~e~~~~~~~Ea~a~g~PvI~s~~~ 298 (377)
|.=. ..-++--.+-|+...|+|++.+..|
T Consensus 86 pGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 86 GGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAG 122 (229)
T ss_dssp CCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred CCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHH
Confidence 8621 0012223455788899999987533
No 123
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=76.06 E-value=25 Score=30.08 Aligned_cols=69 Identities=13% Similarity=0.008 Sum_probs=46.2
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+.. .+..++.+++++.+. ...++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 28 ~~~~l~av~d~~------~~~~~~~~~~~~~~~------~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 93 (330)
T 3e9m_A 28 AQAEVRGIASRR------LENAQKMAKELAIPV------AYGSYEELCKDETIDIIYIPTY--NQGHYSAAKLALSQGKP 93 (330)
T ss_dssp SSEEEEEEBCSS------SHHHHHHHHHTTCCC------CBSSHHHHHHCTTCSEEEECCC--GGGHHHHHHHHHHTTCC
T ss_pred CCcEEEEEEeCC------HHHHHHHHHHcCCCc------eeCCHHHHhcCCCCCEEEEcCC--CHHHHHHHHHHHHCCCe
Confidence 678877554432 244566667766531 1267888887 7899887765 34334456789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 94 vl~EK 98 (330)
T 3e9m_A 94 VLLEK 98 (330)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99865
No 124
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=75.91 E-value=20 Score=26.08 Aligned_cols=111 Identities=10% Similarity=0.058 Sum_probs=63.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHh-cCCCCcEE-EecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVH-FVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA-- 287 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~-~~~~~~v~-~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a-- 287 (377)
...+++|+.+.. .....+...+++ .+. .+. ......+....+.. .|++++-..- .+.-|..+++.+.
T Consensus 4 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~--~v~~~~~~~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~ 76 (153)
T 3cz5_A 4 STARIMLVDDHP----IVREGYRRLIERRPGY--AVVAEAADAGEAYRLYRETTPDIVVMDLTL-PGPGGIEATRHIRQW 76 (153)
T ss_dssp CCEEEEEECSCH----HHHHHHHHHHTTSTTE--EEEEEESSHHHHHHHHHTTCCSEEEECSCC-SSSCHHHHHHHHHHH
T ss_pred cccEEEEECCcH----HHHHHHHHHHhhCCCc--EEEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHHh
Confidence 356777777752 345556666554 332 222 22322444444433 5777764331 2334556666554
Q ss_pred -cCCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 288 -FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 288 -~g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
..+|+|+.. ... ..+.+..|..+++..+.+ .++|..+|.+++..
T Consensus 77 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 77 DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSD--PAELVQAIEAILAG 125 (153)
T ss_dssp CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSC--TTHHHHHHHHHTTT
T ss_pred CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCC--HHHHHHHHHHHHhC
Confidence 367777543 322 223344577889999887 89999999988763
No 125
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=75.84 E-value=12 Score=25.90 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=43.3
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHH
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 287 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a 287 (377)
++++|.|.... -..+.+++.+++.|++-.|.-.+. .++......+|++++... -.+...-++..+
T Consensus 7 ll~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~~-~~~~~~~~~~Dvil~~pq---v~~~~~~~~~~~ 71 (106)
T 1e2b_A 7 YLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFPE-TLAGEKGQNADVVLLGPQ---IAYMLPEIQRLL 71 (106)
T ss_dssp EEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEECS-SSTTHHHHHCSEEEECTT---SGGGHHHHHHHS
T ss_pred EEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEecH-HHHHhhccCCCEEEEccc---hhhhHHHHHHHh
Confidence 45667776544 467789999999999744444443 577778899999887654 334444455544
No 126
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=75.74 E-value=19 Score=25.70 Aligned_cols=107 Identities=9% Similarity=0.205 Sum_probs=61.7
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cCCc
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 291 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g~P 291 (377)
+++|+.+.. .....+....+..|. .|.......+..+.+. ..|++++-..- .+.-|..+++.+. ..+|
T Consensus 6 ~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvllD~~l-~~~~g~~l~~~l~~~~~~~~ 78 (137)
T 3cfy_A 6 RVLLVEDST----SLAILYKQYVKDEPY--DIFHVETGRDAIQFIERSKPQLIILDLKL-PDMSGEDVLDWINQNDIPTS 78 (137)
T ss_dssp EEEEECSCT----THHHHHHHHTTTSSS--EEEEESSHHHHHHHHHHHCCSEEEECSBC-SSSBHHHHHHHHHHTTCCCE
T ss_pred eEEEEeCCH----HHHHHHHHHHHhcCc--eEEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhcCCCCC
Confidence 566777653 345556666555443 3443333334444443 36877754331 2334566666654 3567
Q ss_pred EEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 292 VLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 292 vI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|.. .... ..+.+..|..+++..+.+ .+++...|..++.
T Consensus 79 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNLIQKGAEDFLEKPIN--ADRLKTSVALHLK 121 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHHHHCCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 6654 3322 223344577889999988 9999999987764
No 127
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=75.35 E-value=28 Score=28.08 Aligned_cols=109 Identities=6% Similarity=0.008 Sum_probs=61.6
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc---C
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---Q 289 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~---g 289 (377)
..+++|+.+.. .....+....+..|. .|.......+..+.+. ..|++++-..- .+.-|..+++.+.. .
T Consensus 23 ~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~~~ 95 (250)
T 3r0j_A 23 EARVLVVDDEA----NIVELLSVSLKFQGF--EVYTATNGAQALDRARETRPDAVILDVXM-PGMDGFGVLRRLRADGID 95 (250)
T ss_dssp SCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHTTCC
T ss_pred CceEEEEECCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCC
Confidence 45666666542 244555555555543 2333333233333332 35776653321 33446666766643 5
Q ss_pred CcEEEeC-CCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGTA-AGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s~-~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|.-. .... .+.+..|..+++..+.+ .++|..+|..++.
T Consensus 96 ~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~--~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 96 APALFLTARDSLQDKIAGLTLGGDDYVTKPFS--LEEVVARLRVILR 140 (250)
T ss_dssp CCEEEEECSTTHHHHHHHHTSTTCEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHH
Confidence 7777543 3322 23345578899999988 9999999988864
No 128
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=75.13 E-value=7.7 Score=32.35 Aligned_cols=45 Identities=13% Similarity=-0.010 Sum_probs=34.4
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcc
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTT 301 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~ 301 (377)
+++.+++..+|+++.-+. .+..--.+..++..|+|+|+...|-..
T Consensus 65 ~dl~~ll~~~DVVIDfT~--p~a~~~~~~~al~~G~~vVigTTG~s~ 109 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTL--PEGTLVHLDAALRHDVKLVIGTTGFSE 109 (272)
T ss_dssp CCHHHHHHHCSEEEECSC--HHHHHHHHHHHHHHTCEEEECCCCCCH
T ss_pred CCHHHHhcCCCEEEEcCC--HHHHHHHHHHHHHcCCCEEEECCCCCH
Confidence 678888899999997776 555445566889999999987766433
No 129
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=74.85 E-value=30 Score=27.43 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=67.1
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cC
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQ 289 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g 289 (377)
..+++|+.+.. .....+....+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .+
T Consensus 7 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~~ 79 (233)
T 1ys7_A 7 SPRVLVVDDDS----DVLASLERGLRLSGF--EVATAVDGAEALRSATENRPDAIVLDINM-PVLDGVSVVTALRAMDND 79 (233)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESSC-SSSCHHHHHHHHHHTTCC
T ss_pred CCeEEEEeCCH----HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCC
Confidence 45777777753 356667777776654 3444433344444443 35777754331 3345666776664 46
Q ss_pred CcEEEeC-CC---CcccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s~-~~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|... .. ...+.+..|..|++..+.+ .+++..+|..++.
T Consensus 80 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 80 VPVCVLSARSSVDDRVAGLEAGADDYLVKPFV--LAELVARVKALLR 124 (233)
T ss_dssp CCEEEEECCCTTTCCCTTTTTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 8877542 22 2344455677899999988 9999999988764
No 130
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=74.76 E-value=11 Score=32.03 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=46.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
++++++-+-+. ..+..++.+++++.+. ..++.+++..+|+++..+. .....-.+.+++..|++|+
T Consensus 30 ~~~~l~av~d~------~~~~~~~~a~~~~~~~-------~~~~~~ll~~~D~V~i~tp--~~~h~~~~~~al~~gk~vl 94 (308)
T 3uuw_A 30 ERFEFVGAFTP------NKVKREKICSDYRIMP-------FDSIESLAKKCDCIFLHSS--TETHYEIIKILLNLGVHVY 94 (308)
T ss_dssp SSSEEEEEECS------CHHHHHHHHHHHTCCB-------CSCHHHHHTTCSEEEECCC--GGGHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEECC------CHHHHHHHHHHcCCCC-------cCCHHHHHhcCCEEEEeCC--cHhHHHHHHHHHHCCCcEE
Confidence 67887755443 2455666677776541 2567777779999988776 4444455678999999999
Q ss_pred EeC
Q 017085 294 GTA 296 (377)
Q Consensus 294 ~s~ 296 (377)
+-.
T Consensus 95 ~EK 97 (308)
T 3uuw_A 95 VDK 97 (308)
T ss_dssp ECS
T ss_pred EcC
Confidence 764
No 131
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=74.65 E-value=8.5 Score=27.51 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=62.9
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcC-CCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF-- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~-- 288 (377)
...+++|+.+.. .....+....++.| . .+......++..+.+. ..|++++-..- .+.-|..+++.+..
T Consensus 13 ~~~~ilivdd~~----~~~~~l~~~L~~~g~~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~ 85 (135)
T 3snk_A 13 KRKQVALFSSDP----NFKRDVATRLDALAIY--DVRVSETDDFLKGPPADTRPGIVILDLGG-GDLLGKPGIVEARALW 85 (135)
T ss_dssp CCEEEEEECSCH----HHHHHHHHHHHHTSSE--EEEEECGGGGGGCCCTTCCCSEEEEEEET-TGGGGSTTHHHHHGGG
T ss_pred CCcEEEEEcCCH----HHHHHHHHHHhhcCCe--EEEEeccHHHHHHHHhccCCCEEEEeCCC-CCchHHHHHHHHHhhC
Confidence 345777777653 35566677777665 4 3444333333333332 35776653220 23345555555443
Q ss_pred -CCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 -QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 -g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.+|+|... ... ..+.+..|..+++..+-+ .++|..+|.+++.
T Consensus 86 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~ 132 (135)
T 3snk_A 86 ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLD--GKELLNAVTFHDT 132 (135)
T ss_dssp TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHTC-
T ss_pred CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCC--HHHHHHHHHHHhc
Confidence 67877543 222 223344577899999988 9999999988764
No 132
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=74.62 E-value=11 Score=28.92 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=66.2
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---cC
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 289 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~g 289 (377)
..+++|+.+.. .....+....+..|. .|.......+..+.+.. .|++++-..- .+.-|..+++.+. ..
T Consensus 7 ~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~l~~~~~~ 79 (184)
T 3rqi_A 7 DKNFLVIDDNE----VFAGTLARGLERRGY--AVRQAHNKDEALKLAGAEKFEFITVXLHL-GNDSGLSLIAPLCDLQPD 79 (184)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHTTSCCSEEEECSEE-TTEESHHHHHHHHHHCTT
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhhCCCCEEEEeccC-CCccHHHHHHHHHhcCCC
Confidence 45777777653 345666777776654 34444433444444433 5777653220 3345666776654 36
Q ss_pred CcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 290 LPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 290 ~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
+|||.-. ... ..+.+..|..+++..|-+ .+++..+|..++..
T Consensus 80 ~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~--~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 80 ARILVLTGYASIATAVQAVKDGADNYLAKPAN--VESILAALQTNASE 125 (184)
T ss_dssp CEEEEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHTSTTHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHhCHHHheeCCCC--HHHHHHHHHHHHHH
Confidence 7877543 332 233445678899999988 99999999877653
No 133
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=74.59 E-value=20 Score=25.36 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=61.7
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cCC
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 290 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g~ 290 (377)
.+++|+.+.. .....+....+..+.-..+.......+..+.+. ..|++++-..- .+.-|..+++.+. ..+
T Consensus 4 ~~Ilivdd~~----~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~l-p~~~g~~~~~~l~~~~~~~ 78 (133)
T 3b2n_A 4 TSLIIAEDQN----MLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEM-PGMTGLEVLAEIRKKHLNI 78 (133)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHTTCSC
T ss_pred eEEEEECCCH----HHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecCC-CCCCHHHHHHHHHHHCCCC
Confidence 4566666642 345556666665431112222222233334433 35777764331 2334566666664 357
Q ss_pred cEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 291 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 291 PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
|+|.- .... ..+.+..|..+++..+.+ .+++.++|.+++..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERS--IEELVETINKVNNG 123 (133)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSC--HHHHHHHHHHHHC-
T ss_pred cEEEEecCCCHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHcC
Confidence 77654 3332 233344577899999988 99999999887753
No 134
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=73.81 E-value=19 Score=24.81 Aligned_cols=106 Identities=12% Similarity=0.168 Sum_probs=61.8
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH--cCCcE
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA--FQLPV 292 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a--~g~Pv 292 (377)
+++|+.+.. .....+....+..|. .+.......+...++.. .|++++-..- .+.-|..+++.+. ..+|+
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~i 76 (122)
T 1zgz_A 4 HIVIVEDEP----VTQARLQSYFTQEGY--TVSVTASGAGLREIMQNQSVDLILLDINL-PDENGLMLTRALRERSTVGI 76 (122)
T ss_dssp EEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHTTCCCEE
T ss_pred EEEEEECCH----HHHHHHHHHHHHCCC--eEEEecCHHHHHHHHhcCCCCEEEEeCCC-CCCChHHHHHHHHhcCCCCE
Confidence 566666642 345666666666554 34444433444444443 5777754331 2334666676664 35676
Q ss_pred EEe-CCCCc---ccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 293 LGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 293 I~s-~~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
|.. ..... .+.+..|..+++..+-+ .+++...+.+++
T Consensus 77 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~ 117 (122)
T 1zgz_A 77 ILVTGRSDRIDRIVGLEMGADDYVTKPLE--LRELVVRVKNLL 117 (122)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHH
T ss_pred EEEECCCChhhHHHHHHhCHHHHccCCCC--HHHHHHHHHHHH
Confidence 654 33322 23344577899999887 999999887765
No 135
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=73.19 E-value=23 Score=28.93 Aligned_cols=78 Identities=9% Similarity=0.049 Sum_probs=46.8
Q ss_pred EEEEEec-CCCcccHHHHHHHHHHHhc-CCCCcEEEecCcCCHHHHHH-hcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 217 HAVIIGS-DMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 217 ~l~i~G~-~~~~~~~~~~~l~~~~~~~-~~~~~v~~~g~~~~~~~~~~-~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
++.|+|. | ..-..+.+.+.+. +.+ -+-.....+++.+++. .+|+++--|. .+..--.+..++..|+|+|
T Consensus 2 kV~V~Ga~G-----~mG~~i~~~~~~~~~~e-lva~~d~~~dl~~~~~~~~DvvIDfT~--p~a~~~~~~~a~~~g~~~V 73 (245)
T 1p9l_A 2 RVGVLGAKG-----KVGTTMVRAVAAADDLT-LSAELDAGDPLSLLTDGNTEVVIDFTH--PDVVMGNLEFLIDNGIHAV 73 (245)
T ss_dssp EEEEETTTS-----HHHHHHHHHHHHCTTCE-EEEEECTTCCTHHHHHTTCCEEEECSC--TTTHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCC-----HHHHHHHHHHHhCCCCE-EEEEEccCCCHHHHhccCCcEEEEccC--hHHHHHHHHHHHHcCCCEE
Confidence 5678885 5 4556666665543 221 1222222356767665 7999995555 5555444556788999999
Q ss_pred EeCCCCccc
Q 017085 294 GTAAGGTTE 302 (377)
Q Consensus 294 ~s~~~~~~e 302 (377)
+...|-..+
T Consensus 74 igTTG~~~e 82 (245)
T 1p9l_A 74 VGTTGFTAE 82 (245)
T ss_dssp ECCCCCCHH
T ss_pred EcCCCCCHH
Confidence 876554333
No 136
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=73.16 E-value=21 Score=25.02 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=66.3
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc----
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF---- 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~---- 288 (377)
..+++|+.+.. .....+....++.|. .+......++..+.+. ..|++++-..- .+.-|..+++.+..
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~ 78 (132)
T 3lte_A 6 SKRILVVDDDQ----AMAAAIERVLKRDHW--QVEIAHNGFDAGIKLSTFEPAIMTLDLSM-PKLDGLDVIRSLRQNKVA 78 (132)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHTCCSEEEEESCB-TTBCHHHHHHHHHTTTCS
T ss_pred CccEEEEECCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhcCcc
Confidence 45777777653 356667777776654 3554444444444443 35777654331 34456777777753
Q ss_pred -CCcEEEeCCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 289 -QLPVLGTAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 289 -g~PvI~s~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
..|+|.+.... ..+.+..|..+++..+.+ .+++.++|.+.....
T Consensus 79 ~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~--~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 79 NQPKILVVSGLDKAKLQQAVTEGADDYLEKPFD--NDALLDRIHDLVNEG 126 (132)
T ss_dssp SCCEEEEECCSCSHHHHHHHHHTCCEEECSSCC--HHHHHHHHHHHHC--
T ss_pred CCCeEEEEeCCChHHHHHHHHhChHHHhhCCCC--HHHHHHHHHHHcCCC
Confidence 34555543322 223345577889999988 999999998877543
No 137
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=73.14 E-value=22 Score=25.22 Aligned_cols=110 Identities=13% Similarity=0.013 Sum_probs=67.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEE-ecCcCCHHHHHH--hcCEEEecCCCCC-CccchHHHHHHH--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHF-VNKTLTVAPYLA--AIDVLVQNSQAWG-ECFGRITIEAMA-- 287 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~-~g~~~~~~~~~~--~adv~l~ps~~~~-e~~~~~~~Ea~a-- 287 (377)
...+++|+.+.. .....+....++.|. .+.. ....++....+. ..|++++-..- . +.-|..+++.+.
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~~~~~dlii~d~~~-~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 8 DLPGVLIVEDGR----LAAATLRIQLESLGY--DVLGVFDNGEEAVRCAPDLRPDIALVDIML-CGALDGVETAARLAAG 80 (140)
T ss_dssp CCCEEEEECCBH----HHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHCCSEEEEESSC-CSSSCHHHHHHHHHHH
T ss_pred CCceEEEEECCH----HHHHHHHHHHHHCCC--eeEEEECCHHHHHHHHHhCCCCEEEEecCC-CCCCCHHHHHHHHHhC
Confidence 456778887753 356667777777665 3442 443344444443 36887764431 1 234555555554
Q ss_pred cCCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 288 FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 288 ~g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
..+|+|.-. ... ..+.+..|..+++..+-+ .+++..+|.+++.
T Consensus 81 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 81 CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVA--ADTLHRSIEMAIH 127 (140)
T ss_dssp SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCC--HHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCC--HHHHHHHHHHHHh
Confidence 578887543 332 223344577889999887 9999999988764
No 138
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=72.97 E-value=20 Score=24.75 Aligned_cols=107 Identities=7% Similarity=0.075 Sum_probs=60.7
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH--cCCcE
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPV 292 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a--~g~Pv 292 (377)
+++|+.+.. .....+....++.|. .+.......+..+.+. ..|++++-..- .+.-|..+++.+. .++|+
T Consensus 4 ~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlii~D~~~-p~~~g~~~~~~lr~~~~~~i 76 (120)
T 3f6p_A 4 KILVVDDEK----PIADILEFNLRKEGY--EVHCAHDGNEAVEMVEELQPDLILLDIML-PNKDGVEVCREVRKKYDMPI 76 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHTTCCSEEEEETTS-TTTHHHHHHHHHHTTCCSCE
T ss_pred eEEEEECCH----HHHHHHHHHHHhCCE--EEEEeCCHHHHHHHHhhCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCE
Confidence 456666542 345556666666554 3444333334444443 35776653321 3334556666553 35777
Q ss_pred EEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 293 LGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 293 I~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
|... ... ..+.+..|..+++..|.+ .+++..++.+++.
T Consensus 77 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 77 IMLTAKDSEIDKVIGLEIGADDYVTKPFS--TRELLARVKANLR 118 (120)
T ss_dssp EEEEESSCHHHHHHHHHTTCCEEEEESCC--HHHHHHHHHHHHT
T ss_pred EEEECCCChHHHHHHHhCCcceeEcCCCC--HHHHHHHHHHHHh
Confidence 7543 222 122345678899999988 9999999987764
No 139
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=72.78 E-value=22 Score=25.00 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=62.7
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc----
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF---- 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~---- 288 (377)
..+++|+.+.. .....+....+ .+ ..+......++..+.+.. .|++++-..- .+.-|..+++.+..
T Consensus 4 ~~~ilivdd~~----~~~~~l~~~l~-~~--~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~ 75 (133)
T 3nhm_A 4 KPKVLIVENSW----TMRETLRLLLS-GE--FDCTTAADGASGLQQALAHPPDVLISDVNM-DGMDGYALCGHFRSEPTL 75 (133)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHT-TT--SEEEEESSHHHHHHHHHHSCCSEEEECSSC-SSSCHHHHHHHHHHSTTT
T ss_pred CCEEEEEcCCH----HHHHHHHHHHh-CC--cEEEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhCCcc
Confidence 35677777652 23445555444 33 235544443444444433 5777764331 34456677766654
Q ss_pred -CCcEEEeCC-C--CcccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 289 -QLPVLGTAA-G--GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 289 -g~PvI~s~~-~--~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
++|+|.... . ...+....|..+++..+-+ .++|.++|.+++..
T Consensus 76 ~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 76 KHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVK--PPVLIAQLHALLAR 122 (133)
T ss_dssp TTCCEEEEESCCC-----TTSCCCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHhHHHHhhcCCceEEeccCC--HHHHHHHHHHHHhh
Confidence 678775432 1 1233455577889999988 99999999988753
No 140
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=72.41 E-value=38 Score=27.55 Aligned_cols=110 Identities=12% Similarity=0.163 Sum_probs=63.9
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHH---Hc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAM---AF 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~---a~ 288 (377)
.+.+++++.+.. .....+....++.|. .|.......+..+.+.. .|++++-..- .+.-|..+++.+ ..
T Consensus 128 ~~~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~a~~~~eal~~l~~~~~dlvl~D~~m-p~~~G~~l~~~ir~~~~ 200 (254)
T 2ayx_A 128 DDMMILVVDDHP----INRRLLADQLGSLGY--QCKTANDGVDALNVLSKNHIDIVLSDVNM-PNMDGYRLTQRIRQLGL 200 (254)
T ss_dssp CCCEEEEEESSH----HHHHHHHHHHHHHTS--EEEEECCSHHHHHHHHHSCCSEEEEEESS-CSSCCHHHHHHHHHHHC
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHHhCCCCEEEEcCCC-CCCCHHHHHHHHHhcCC
Confidence 346677777652 345556666666665 35544443444444443 5776642220 222355555554 34
Q ss_pred CCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.+|||+.. ... ....+..|.++++..+-+ .++|.++|.+++.
T Consensus 201 ~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~--~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 201 TLPVIGVTANALAEEKQRCLESGMDSCLSKPVT--LDVIKQTLTLYAE 246 (254)
T ss_dssp CSCEEEEESSTTSHHHHHHHHCCCEEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHcCCceEEECCCC--HHHHHHHHHHHHH
Confidence 78888643 222 223344577889999988 9999999988764
No 141
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=72.32 E-value=24 Score=25.23 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=64.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhc-CCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF-- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~-- 288 (377)
...+++|+.+.. .....+....++. +.. .+.......+....+.. .|++++-..- .+.-|..+++.+..
T Consensus 8 ~~~~iLivdd~~----~~~~~l~~~L~~~~~~~-~v~~~~~~~~al~~l~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~ 81 (143)
T 2qv0_A 8 EKMKVIIVEDEF----LAQQELSWLINTHSQME-IVGSFDDGLDVLKFLQHNKVDAIFLDINI-PSLDGVLLAQNISQFA 81 (143)
T ss_dssp --CEEEEECSCH----HHHHHHHHHHHHHSCCE-EEEEESCHHHHHHHHHHCCCSEEEECSSC-SSSCHHHHHHHHTTST
T ss_pred CceEEEEEcCCH----HHHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhCCCCEEEEecCC-CCCCHHHHHHHHHccC
Confidence 456788887763 3456666666665 321 12222322344444443 5887764431 33456677777754
Q ss_pred -CCcEE-EeCCC-CcccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 289 -QLPVL-GTAAG-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 289 -g~PvI-~s~~~-~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
..|+| .+... ...+.+..|..+++..+-+ .++|..+|.+++..
T Consensus 82 ~~~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 82 HKPFIVFITAWKEHAVEAFELEAFDYILKPYQ--ESRIINMLQKLTTA 127 (143)
T ss_dssp TCCEEEEEESCCTTHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHhCCcceEEeCCCC--HHHHHHHHHHHHHH
Confidence 34454 33322 2333445577889999887 99999999887653
No 142
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=72.23 E-value=16 Score=28.84 Aligned_cols=103 Identities=10% Similarity=0.081 Sum_probs=60.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH--c-CCcE
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--F-QLPV 292 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a--~-g~Pv 292 (377)
++|+.+.. .....+....+..|. .|.......+..+.+. ..|++++|.. -|..+++.+. . .+|+
T Consensus 3 ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvilp~~-----~g~~~~~~lr~~~~~~~i 71 (223)
T 2hqr_A 3 VLLIEKNS----VLGGEIEKGLNVKGF--MADVTESLEDGEYLMDIRNYDLVMVSDK-----NALSFVSRIKEKHSSIVV 71 (223)
T ss_dssp EEEECSCH----HHHHHHHHHHGGGTC--CEEEESSHHHHHHHHTTSCCSEEEECCT-----THHHHHHHHHHHCTTSEE
T ss_pred EEEEcCCH----HHHHHHHHHHHHCCc--EEEEECCHHHHHHHHhcCCCCEEEeCCC-----CHHHHHHHHHhCCCCCcE
Confidence 44555542 345566666666554 3444443344444443 3577774432 3555665553 3 6787
Q ss_pred EEeC-CCC---cccceecCcceeeecCC-CCChhHHHHHHHHHhhC
Q 017085 293 LGTA-AGG---TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATH 333 (377)
Q Consensus 293 I~s~-~~~---~~e~~~~~~~g~~~~~~-~~~~~~la~~i~~l~~~ 333 (377)
|.-. ... ..+.+..|..|++..+. + .+++..+|..++..
T Consensus 72 i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~--~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 72 LVSSDNPTSEEEVHAFEQGADDYIAKPYRS--IKALVARIEARLRF 115 (223)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEETTCSC--THHHHHHHHHHTSS
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCC--HHHHHHHHHHHhcc
Confidence 7543 222 22334457789999998 8 99999999988764
No 143
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=71.89 E-value=25 Score=25.23 Aligned_cols=109 Identities=6% Similarity=-0.016 Sum_probs=55.7
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE-EecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cCC
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 290 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~-~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g~ 290 (377)
+++|+.+.. .....+...+...+....+. ......+....+. ..|++++-..- .+.-|..+++.+. .++
T Consensus 4 ~ILivdd~~----~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~l-p~~~g~~l~~~l~~~~~~~ 78 (141)
T 3cu5_A 4 RILIVDDEK----LTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRM-PRMDGIELVDNILKLYPDC 78 (141)
T ss_dssp EEEEECSCH----HHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCC-SSSCHHHHHHHHHHHCTTC
T ss_pred eEEEEeCCH----HHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCCC
Confidence 566666652 23344444443211111233 2222233334443 35877754331 2334566666654 467
Q ss_pred cEEEeC-CC---CcccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 291 PVLGTA-AG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 291 PvI~s~-~~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
|+|... .. ...+.+..|..+++..|-+ .+++.++|.+++.
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 79 SVIFMSGYSDKEYLKAAIKFRAIRYVEKPID--PSEIMDALKQSIQ 122 (141)
T ss_dssp EEEEECCSTTTCCC------CCCEEECSSCC--HHHHHHHHHHHHH
T ss_pred cEEEEeCCCcHHHHHHHHhCCccEEEeCCCC--HHHHHHHHHHHHH
Confidence 777542 22 2344455677899999887 9999999988764
No 144
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=71.89 E-value=13 Score=29.35 Aligned_cols=107 Identities=10% Similarity=0.002 Sum_probs=61.2
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHH---cCCcE
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA---FQLPV 292 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a---~g~Pv 292 (377)
.+++|+.+.. .....+....+..+ .|.......+..+.+...|++++-..- .+.-|..+++.+. ..+|+
T Consensus 3 ~~ilivdd~~----~~~~~l~~~L~~~~---~v~~~~~~~~al~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~~~~~i 74 (220)
T 1p2f_A 3 WKIAVVDDDK----NILKKVSEKLQQLG---RVKTFLTGEDFLNDEEAFHVVVLDVML-PDYSGYEICRMIKETRPETWV 74 (220)
T ss_dssp EEEEEECSCH----HHHHHHHHHHTTTE---EEEEESSHHHHHHCCSCCSEEEEESBC-SSSBHHHHHHHHHHHCTTSEE
T ss_pred ceEEEEeCCH----HHHHHHHHHHHhCC---CEEEECCHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCcE
Confidence 3566666652 34555666665543 344333322322222467887753321 3334566666554 46787
Q ss_pred EEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 293 LGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 293 I~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
|.-. ... ..+.+..|..|++..+.+ .+++..+|..++.
T Consensus 75 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 75 ILLTLLSDDESVLKGFEAGADDYVTKPFN--PEILLARVKRFLE 116 (220)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEECCCC--HHHHHHHHHHHHc
Confidence 7543 222 223344577899999888 9999999988764
No 145
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=71.24 E-value=23 Score=24.54 Aligned_cols=108 Identities=12% Similarity=0.069 Sum_probs=62.7
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cCC
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 290 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g~ 290 (377)
.+++++.+.. .....+....+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+. ..+
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (124)
T 1srr_A 4 EKILIVDDQS----GIRILLNEVFNKEGY--QTFQAANGLQALDIVTKERPDLVLLDMKI-PGMDGIEILKRMKVIDENI 76 (124)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-TTCCHHHHHHHHHHHCTTC
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHHhCCCC
Confidence 3566776652 345666666666554 3443333334444443 36877754331 2334555666554 467
Q ss_pred cEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 291 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 291 PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
|+|.. .... ..+....|..+++..|.+ .+++..++.+++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~ 120 (124)
T 1srr_A 77 RVIIMTAYGELDMIQESKELGALTHFAKPFD--IDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCCCEEESSCC--HHHHHHHHHHHSC
T ss_pred CEEEEEccCchHHHHHHHhcChHhhccCCCC--HHHHHHHHHHHhc
Confidence 77754 3332 223344577889999888 9999999988765
No 146
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=70.70 E-value=26 Score=24.95 Aligned_cols=110 Identities=14% Similarity=0.031 Sum_probs=63.7
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc-----
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF----- 288 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~----- 288 (377)
.+++|+.+.. .....+....+..|. .+.......+..+++.. .|++++-..- .+.-|..+++.+..
T Consensus 4 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (138)
T 3c3m_A 4 YTILVVDDSP----MIVDVFVTMLERGGY--RPITAFSGEECLEALNATPPDLVLLDIMM-EPMDGWETLERIKTDPATR 76 (138)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHSTTTT
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHcCc--eEEEeCCHHHHHHHHhccCCCEEEEeCCC-CCCCHHHHHHHHHcCcccC
Confidence 4667777652 345666677766654 34444333444444443 5777754331 33446777777752
Q ss_pred CCcEEEe-CCCCccccee---cCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 289 QLPVLGT-AAGGTTEIVV---NGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 289 g~PvI~s-~~~~~~e~~~---~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
.+|+|.. .......... .+..+++..+.+ .+++..+|..++...
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~--~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 77 DIPVLMLTAKPLTPEEANEYGSYIEDYILKPTT--HHQLYEAIEHVLARR 124 (138)
T ss_dssp TSCEEEEESSCCCHHHHHHTTTTCSEEEECCCH--HHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCChHHHHHHhhcCHhheEeCCCC--HHHHHHHHHHHHHHh
Confidence 5777754 3332221111 123689999887 999999999887643
No 147
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=70.56 E-value=25 Score=24.76 Aligned_cols=108 Identities=7% Similarity=0.018 Sum_probs=64.0
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---cCC
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQL 290 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~g~ 290 (377)
.+++|+.+.. .....+....+..|. .+.......+....+.. .|++++-..- .+.-|..+++.+. .++
T Consensus 4 ~~Ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (132)
T 3crn_A 4 KRILIVDDDT----AILDSTKQILEFEGY--EVEIAATAGEGLAKIENEFFNLALFXIKL-PDMEGTELLEKAHKLRPGM 76 (132)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSBC-SSSBHHHHHHHHHHHCTTS
T ss_pred cEEEEEeCCH----HHHHHHHHHHHHCCc--eEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCchHHHHHHHHhhCCCC
Confidence 4667777652 345666676666554 35444433444444433 5777754321 2334566666553 367
Q ss_pred cEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 291 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 291 PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
|+|.. .... ..+.+..|..+++..+.+ .++|..+|.+++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~L~~~i~~~~~ 120 (132)
T 3crn_A 77 KKIMVTGYASLENSVFSLNAGADAYIMKPVN--PRDLLEKIKEKLD 120 (132)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred cEEEEeccccHHHHHHHHhccchhhccCCCC--HHHHHHHHHHHHh
Confidence 77654 3332 233345577899999988 9999999988764
No 148
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=70.03 E-value=29 Score=29.18 Aligned_cols=84 Identities=8% Similarity=0.032 Sum_probs=53.3
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC-------cCCHHHHHHhcCEEEecCCC------CC--Ccc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-------TLTVAPYLAAIDVLVQNSQA------WG--ECF 278 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~-------~~~~~~~~~~adv~l~ps~~------~~--e~~ 278 (377)
++.++.++.........+.+.+++..+++|.. .|..+.- .+++.+.+..||+++++.-. .+ .+.
T Consensus 55 ~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~-~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l 133 (291)
T 3en0_A 55 NDAIIGIIPSASREPLLIGERYQTIFSDMGVK-ELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPL 133 (291)
T ss_dssp GGCEEEEECTTCSSHHHHHHHHHHHHHHHCCS-EEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHH
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCC-eeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCH
Confidence 45677777664433334667788888888874 4555532 14467889999999876521 01 112
Q ss_pred chHHHHHHHcC-CcEEEeCCC
Q 017085 279 GRITIEAMAFQ-LPVLGTAAG 298 (377)
Q Consensus 279 ~~~~~Ea~a~g-~PvI~s~~~ 298 (377)
--.+-|+...| +|++.+..|
T Consensus 134 ~~~L~~~~~~G~~~~~GtSAG 154 (291)
T 3en0_A 134 MDRIRQRVHNGEISLAGTSAG 154 (291)
T ss_dssp HHHHHHHHHTTSSEEEEETHH
T ss_pred HHHHHHHHHCCCeEEEEeCHH
Confidence 23455778899 898877644
No 149
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=69.84 E-value=21 Score=24.77 Aligned_cols=107 Identities=11% Similarity=0.043 Sum_probs=60.6
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH-----cC
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA-----FQ 289 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a-----~g 289 (377)
+++++.+.. .....+....+..|. .+.......+..+.+. ..|++++-..- .+.-|..+++.+. .+
T Consensus 4 ~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ 76 (127)
T 2jba_A 4 RILVVEDEA----PIREMVCFVLEQNGF--QPVEAEDYDSAVNQLNEPWPDLILLAWML-PGGSGIQFIKHLRRESMTRD 76 (127)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHTTCSSSCCSEEEEESEE-TTEEHHHHHHHHHTSTTTTT
T ss_pred EEEEEcCCH----HHHHHHHHHHHHCCc--eEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHhCcccCC
Confidence 556666652 345566666666554 2443332222222222 35777653320 2334666777765 35
Q ss_pred CcEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 290 LPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+|+|.. .... ..+.+..|..+++..+-+ .+++..++..++.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 121 (127)
T 2jba_A 77 IPVVMLTARGEEEDRVRGLETGADDCITKPFS--PKELVARIKAVMR 121 (127)
T ss_dssp SCEEEEEETTHHHHHHTTCCCSCSEEEEESCC--HHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCC--HHHHHHHHHHHHh
Confidence 787754 3222 233455677889999887 9999999987654
No 150
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=69.68 E-value=38 Score=30.41 Aligned_cols=78 Identities=15% Similarity=0.022 Sum_probs=46.3
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+..+ +..+.+.+...+++++..-.+.+..+++.++++ ..|+++..+. ...-.-.+.+||..|++
T Consensus 43 ~~~~lvav~d~~~---~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp--~~~h~~~~~~al~aGkh 117 (444)
T 2ixa_A 43 DDVEIVAFADPDP---YMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP--WEWHHEHGVAAMKAGKI 117 (444)
T ss_dssp TTEEEEEEECSCH---HHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEeCCH---HHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCe
Confidence 7788875555321 122233333334565432333322247888887 4888888775 34444566789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 118 V~~EK 122 (444)
T 2ixa_A 118 VGMEV 122 (444)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99864
No 151
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=68.60 E-value=11 Score=26.92 Aligned_cols=109 Identities=7% Similarity=0.046 Sum_probs=64.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE-EecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHH-HcC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAM-AFQ 289 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~-~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~-a~g 289 (377)
...+++|+-+.. .....+....++.|.. |. ....-++..+++.. .|++++=-. -.+.-|..+++.+ ..+
T Consensus 7 r~~rILiVdD~~----~~~~~l~~~L~~~G~~--v~~~a~~g~eAl~~~~~~~~DlvllDi~-mP~~~G~el~~~lr~~~ 79 (123)
T 2lpm_A 7 RRLRVLVVEDES----MIAMLIEDTLCELGHE--VAATASRMQEALDIARKGQFDIAIIDVN-LDGEPSYPVADILAERN 79 (123)
T ss_dssp CCCCEEEESSST----TTSHHHHHHHHHHCCC--CCBCSCCHHHHHHHHHHCCSSEEEECSS-SSSCCSHHHHHHHHHTC
T ss_pred CCCEEEEEeCCH----HHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHHhCCCCEEEEecC-CCCCCHHHHHHHHHcCC
Confidence 456778887754 3456777777777754 32 22222344445443 577774222 0233466666665 357
Q ss_pred CcEEEe-CCCCcccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 290 LPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 290 ~PvI~s-~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
+|||.- ..+........+..+++..|-+ .++|.++|.+++
T Consensus 80 ipvI~lTa~~~~~~~~~~g~~~yl~KP~~--~~~L~~~l~~~~ 120 (123)
T 2lpm_A 80 VPFIFATGYGSKGLDTRYSNIPLLTKPFL--DSELEAVLVQIS 120 (123)
T ss_dssp CSSCCBCTTCTTSCCSSSCSCSCBCSSSS--HHHHHHHHSTTC
T ss_pred CCEEEEecCccHHHHHhCCCCcEEECCCC--HHHHHHHHHHHH
Confidence 897754 3332222233466789999988 999998887654
No 152
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=68.32 E-value=32 Score=30.19 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=46.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+. ..+..++.+++++.+ . ..++.+++.. .|+++..+. ...-.-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~a~~~g~~----~---~~~~~ell~~~~vD~V~i~tp--~~~H~~~~~~al~aGk~ 90 (387)
T 3moi_A 26 PDAQIVAACDP------NEDVRERFGKEYGIP----V---FATLAEMMQHVQMDAVYIASP--HQFHCEHVVQASEQGLH 90 (387)
T ss_dssp TTEEEEEEECS------CHHHHHHHHHHHTCC----E---ESSHHHHHHHSCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCC----e---ECCHHHHHcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCc
Confidence 67887755553 234555666666653 1 2567788876 899888776 34334467799999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 91 Vl~EK 95 (387)
T 3moi_A 91 IIVEK 95 (387)
T ss_dssp EEECS
T ss_pred eeeeC
Confidence 99865
No 153
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=68.30 E-value=38 Score=25.94 Aligned_cols=108 Identities=7% Similarity=0.028 Sum_probs=64.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCcc-chHHHHHHH---cC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECF-GRITIEAMA---FQ 289 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~-~~~~~Ea~a---~g 289 (377)
...+++|+.+.. .....+.......|.. +.......+.. -...|++++-.. ..+. |. +.+.+. ..
T Consensus 11 ~~~~iLivdd~~----~~~~~l~~~L~~~g~~--v~~~~~~~~al--~~~~dlvl~D~~--mp~~~g~-l~~~~~~~~~~ 79 (196)
T 1qo0_D 11 RELQVLVLNPPG----EVSDALVLQLIRIGCS--VRQCWPPPEAF--DVPVDVVFTSIF--QNRHHDE-IAALLAAGTPR 79 (196)
T ss_dssp GGCEEEEESCTT----HHHHHHHHHHHHHTCE--EEEECSCCSSC--SSCCSEEEEECC--SSTHHHH-HHHHHHHSCTT
T ss_pred cCCeEEEEcCCh----hHHHHHHHHHHHcCCe--EEEecCchhhC--CCCCCEEEEeCC--CCccchH-HHHHHhccCCC
Confidence 456788888764 4566677777766652 43333222211 125688776443 2222 44 555554 46
Q ss_pred CcEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 290 LPVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 290 ~PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
+|+|.- ..+. ..+.+..|..+++..|-+ .+++..+|..++...
T Consensus 80 ~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~--~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 80 TTLVALVEYESPAVLSQIIELECHGVITQPLD--AHRVLPVLVSARRIS 126 (196)
T ss_dssp CEEEEEECCCSHHHHHHHHHHTCSEEEESSCC--GGGHHHHHHHHHHHH
T ss_pred CCEEEEEcCCChHHHHHHHHcCCCeeEecCcC--HHHHHHHHHHHHHHH
Confidence 787754 3332 223344577899999988 999999998887643
No 154
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=67.79 E-value=13 Score=31.15 Aligned_cols=92 Identities=12% Similarity=0.022 Sum_probs=51.6
Q ss_pred CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccceec------------------Ccce-----ee
Q 017085 256 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVN------------------GTTG-----LL 312 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~------------------~~~g-----~~ 312 (377)
.-..-++.||+++..... .|++-..+++++.....+++....++.-+-.. ...| +.
T Consensus 41 ~d~~~l~~Adlvv~~G~~-~E~w~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~dPH~W 119 (284)
T 2prs_A 41 SDVKRLQNADLVVWVGPE-MEAFMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLW 119 (284)
T ss_dssp THHHHHHHCSEEEECCTT-TCGGGHHHHHTSCGGGEEEGGGCTTTGGGCCC---------------------CCCCCCGG
T ss_pred HHHHHHHcCCEEEEcCCC-cHHHHHHHHHhcCCCCcEEEecCCCcccccccccccccccccccccccccCCCCCCCCccc
Confidence 344667899999987653 68877778876643333444333332211000 0112 22
Q ss_pred ecCCCCChhHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 017085 313 HPVGKEGITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 350 (377)
Q Consensus 313 ~~~~~~~~~~la~~i~~l~~--~~~~~~~~~~~~~~~~~~ 350 (377)
.++.+ ...+++.|...|. ||+......+|+.++..+
T Consensus 120 ldp~~--~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 157 (284)
T 2prs_A 120 LSPEI--ARATAVAIHGKLVELMPQSRAKLDANLKDFEAQ 157 (284)
T ss_dssp GCHHH--HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CCHHH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 23333 5677777776665 887777777777665543
No 155
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=67.68 E-value=27 Score=23.95 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=59.6
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---cCCc
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQLP 291 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~g~P 291 (377)
+++++.+.. .....+....+..|. .+.......+....+.. .|++++-..- .+.-|..+++.+. ..+|
T Consensus 2 ~ilivdd~~----~~~~~l~~~l~~~g~--~v~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~g~~~~~~l~~~~~~~~ 74 (121)
T 2pl1_A 2 RVLVVEDNA----LLRHHLKVQIQDAGH--QVDDAEDAKEADYYLNEHIPDIAIVDLGL-PDEDGLSLIRRWRSNDVSLP 74 (121)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHHTTCCSC
T ss_pred eEEEEeCcH----HHHHHHHHHHhhcCC--EEEEeCCHHHHHHHHhccCCCEEEEecCC-CCCCHHHHHHHHHhcCCCCC
Confidence 345555542 345556666666554 34433333344444433 5777653321 2334566776664 3567
Q ss_pred EEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 292 VLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 292 vI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
+|.. .... ..+.+..|..+++..+-+ .+++...+.+++
T Consensus 75 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~ 116 (121)
T 2pl1_A 75 ILVLTARESWQDKVEVLSAGADDYVTKPFH--IEEVMARMQALM 116 (121)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHcCccceEECCCC--HHHHHHHHHHHH
Confidence 7654 3332 223344577889999888 999999987765
No 156
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=67.30 E-value=24 Score=30.46 Aligned_cols=93 Identities=12% Similarity=0.024 Sum_probs=56.8
Q ss_pred CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcC
Q 017085 176 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 255 (377)
Q Consensus 176 ~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~ 255 (377)
..+.++++|-= .-|...++.++.. .++++++-+-+. ..+..++.+++++++ .. .
T Consensus 26 ~~~rigiIG~G--~~g~~~~~~~l~~-----------~~~~~l~av~d~------~~~~~~~~a~~~g~~----~~---~ 79 (350)
T 3rc1_A 26 NPIRVGVIGCA--DIAWRRALPALEA-----------EPLTEVTAIASR------RWDRAKRFTERFGGE----PV---E 79 (350)
T ss_dssp CCEEEEEESCC--HHHHHTHHHHHHH-----------CTTEEEEEEEES------SHHHHHHHHHHHCSE----EE---E
T ss_pred CceEEEEEcCc--HHHHHHHHHHHHh-----------CCCeEEEEEEcC------CHHHHHHHHHHcCCC----Cc---C
Confidence 45778888741 1222234444432 267888755443 235566677777653 11 4
Q ss_pred CHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 256 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 256 ~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
++.+++. ..|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 80 ~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~Vl~EK 120 (350)
T 3rc1_A 80 GYPALLERDDVDAVYVPLP--AVLHAEWIDRALRAGKHVLAEK 120 (350)
T ss_dssp SHHHHHTCTTCSEEEECCC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred CHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCcEEEeC
Confidence 6777776 5899888775 4444455678999999999854
No 157
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=67.30 E-value=42 Score=28.61 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=46.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+. ..+..++.+++++.+ ..++.+++. .+|+++..+. ...-.-.+.+++..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 89 (331)
T 4hkt_A 26 ADARLVAVADA------FPAAAEAIAGAYGCE--------VRTIDAIEAAADIDAVVICTP--TDTHADLIERFARAGKA 89 (331)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCE--------ECCHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEECC------CHHHHHHHHHHhCCC--------cCCHHHHhcCCCCCEEEEeCC--chhHHHHHHHHHHcCCc
Confidence 67887755443 235566666776542 256778887 7899888775 44444567789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 90 v~~EK 94 (331)
T 4hkt_A 90 IFCEK 94 (331)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99864
No 158
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=67.28 E-value=39 Score=27.31 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=60.6
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc--CCc
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--QLP 291 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~--g~P 291 (377)
.+++|+.+.. .....+....+..+. .|.......+....+.. .|++++-..- .+.-|..+++.+.. .+|
T Consensus 38 ~~ILivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~DlvllD~~l-p~~~G~~l~~~lr~~~~~~ 110 (249)
T 3q9s_A 38 QRILVIEDDH----DIANVLRMDLTDAGY--VVDHADSAMNGLIKAREDHPDLILLDLGL-PDFDGGDVVQRLRKNSALP 110 (249)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEEECCS-CHHHHHHHHHHHHTTCCCC
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHHcCCCCC
Confidence 5666666642 345555555555543 33333332333333332 5776653320 33345566665543 467
Q ss_pred EEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 292 VLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 292 vI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
||.-.... ..+.+..|..|++..+.+ .++|..+|..++.
T Consensus 111 iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~--~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 111 IIVLTARDTVEEKVRLLGLGADDYLIKPFH--PDELLARVKVQLR 153 (249)
T ss_dssp EEEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEECCCC--HHHHHHHHHHHHh
Confidence 77543222 223344577899999988 9999999998775
No 159
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=67.27 E-value=44 Score=28.68 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=57.6
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccC-CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV-PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~-~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
.+.+.++.+|-=. .-| ...+.++. +. ++++++-+-+. ..+..++.+++++.+ ..
T Consensus 16 ~~~irvgiIG~G~-~~g-~~~~~~l~-----------~~~~~~~lvav~d~------~~~~~~~~a~~~~~~---~~--- 70 (340)
T 1zh8_A 16 LRKIRLGIVGCGI-AAR-ELHLPALK-----------NLSHLFEITAVTSR------TRSHAEEFAKMVGNP---AV--- 70 (340)
T ss_dssp CCCEEEEEECCSH-HHH-HTHHHHHH-----------TTTTTEEEEEEECS------SHHHHHHHHHHHSSC---EE---
T ss_pred CCceeEEEEecCH-HHH-HHHHHHHH-----------hCCCceEEEEEEcC------CHHHHHHHHHHhCCC---cc---
Confidence 5667888888310 001 12334433 22 56887655553 245566677777642 11
Q ss_pred cCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 254 TLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 254 ~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
..++.+++. ..|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 71 ~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGkhVl~EK 113 (340)
T 1zh8_A 71 FDSYEELLESGLVDAVDLTLP--VELNLPFIEKALRKGVHVICEK 113 (340)
T ss_dssp ESCHHHHHHSSCCSEEEECCC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred cCCHHHHhcCCCCCEEEEeCC--chHHHHHHHHHHHCCCcEEEeC
Confidence 256778886 4798888775 3333455678999999999864
No 160
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=67.10 E-value=29 Score=24.14 Aligned_cols=78 Identities=5% Similarity=-0.002 Sum_probs=47.4
Q ss_pred CCeEEE-EEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHc--CC
Q 017085 214 PSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF--QL 290 (377)
Q Consensus 214 ~~~~l~-i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~--g~ 290 (377)
...+++ +++.|.... -..+.+++.+++.|++-.+.-.+. .++.+.+...|++++.-. -.+-..-++..+- |+
T Consensus 5 ~~mkIlL~C~aGmSTs-llv~km~~~a~~~gi~v~i~a~~~-~~~~~~~~~~DvvLLgPQ---V~y~~~~ik~~~~~~~i 79 (108)
T 3nbm_A 5 KELKVLVLCAGSGTSA-QLANAINEGANLTEVRVIANSGAY-GAHYDIMGVYDLIILAPQ---VRSYYREMKVDAERLGI 79 (108)
T ss_dssp CCEEEEEEESSSSHHH-HHHHHHHHHHHHHTCSEEEEEEET-TSCTTTGGGCSEEEECGG---GGGGHHHHHHHHTTTTC
T ss_pred cCceEEEECCCCCCHH-HHHHHHHHHHHHCCCceEEEEcch-HHHHhhccCCCEEEEChH---HHHHHHHHHHHhhhcCC
Confidence 345555 455554322 367788888999998633322222 456667788999887432 2334445555554 89
Q ss_pred cEEEeC
Q 017085 291 PVLGTA 296 (377)
Q Consensus 291 PvI~s~ 296 (377)
||.+-+
T Consensus 80 pV~vI~ 85 (108)
T 3nbm_A 80 QIVATR 85 (108)
T ss_dssp EEEECC
T ss_pred cEEEeC
Confidence 998876
No 161
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=67.03 E-value=14 Score=32.23 Aligned_cols=82 Identities=12% Similarity=-0.010 Sum_probs=53.3
Q ss_pred CCHHHHHHhcCEEEec--CCCCCCccchHHHHHHHcCCcEEEeCCCCcccceecCcceee-e-cCCCCChhHHHHHHHHH
Q 017085 255 LTVAPYLAAIDVLVQN--SQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGTTGLL-H-PVGKEGITPLAKNIVKL 330 (377)
Q Consensus 255 ~~~~~~~~~adv~l~p--s~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~~~~~g~~-~-~~~~~~~~~la~~i~~l 330 (377)
++..++++.....+.- |.. .+=.-=++.+|+.+|+-.|.-..+...+++.. ..++ + +..+ +++||+-|..|
T Consensus 223 ~~~~~~l~~YKFyLafENs~c-~dYvTEK~~~al~~g~VPI~~G~~~~~~~~Pp--~SfI~~~dF~s--~~~La~yL~~L 297 (371)
T 2nzw_A 223 KNKNEFLSQYKFNLCFENTQG-YGYVTEKIIDAYFSHTIPIYWGSPSVAKDFNP--KSFVNVHDFKN--FDEAIDYIKYL 297 (371)
T ss_dssp SCHHHHHTTEEEEEEECSSCC-TTCCCTHHHHHHHTTCEEEEESCTTGGGTSCG--GGSEEGGGSSS--HHHHHHHHHHH
T ss_pred ccHHHHHhcCcEEEEEeccCC-CCcccHHHHHHHhCCeEEEEECCCchhhhCCC--CceEEcccCCC--HHHHHHHHHHH
Confidence 4556677777766642 220 11123467899999977776665666666633 3343 3 2334 99999999999
Q ss_pred hhCHHHHHHHH
Q 017085 331 ATHVERRLTMG 341 (377)
Q Consensus 331 ~~~~~~~~~~~ 341 (377)
-+|++++.+.-
T Consensus 298 ~~n~~~Y~~y~ 308 (371)
T 2nzw_A 298 HTHKNAYLDML 308 (371)
T ss_dssp HTCHHHHHHHH
T ss_pred hcCHHHHHHHH
Confidence 99998877653
No 162
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=66.76 E-value=44 Score=26.16 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=63.5
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cCC
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 290 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g~ 290 (377)
.+++|+.+.. .....+....+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. ..+
T Consensus 3 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~lr~~~~~~ 75 (225)
T 1kgs_A 3 VRVLVVEDER----DLADLITEALKKEMF--TVDVCYDGEEGMYMALNEPFDVVILDIML-PVHDGWEILKSMRESGVNT 75 (225)
T ss_dssp CEEEEECSSH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEEESCC-SSSCHHHHHHHHHHTTCCC
T ss_pred ceEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCC
Confidence 3566666642 345666666666554 3444333334434443 35777754331 3334666666664 367
Q ss_pred cEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 291 PVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 291 PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
|+|.-. ... ..+.+..|..|++..+.+ .+++..+|..++.
T Consensus 76 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 76 PVLMLTALSDVEYRVKGLNMGADDYLPKPFD--LRELIARVRALIR 119 (225)
T ss_dssp CEEEEESSCHHHHHHHTCCCCCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHhCCccEEEeCCCC--HHHHHHHHHHHHh
Confidence 877543 222 233455677899999988 9999999988764
No 163
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=66.30 E-value=31 Score=24.24 Aligned_cols=109 Identities=8% Similarity=0.034 Sum_probs=64.2
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cCC
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 290 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g~ 290 (377)
.+++|+.+.. .....+.......|. .+.......+....+. ..|++++-..- .+.-|..+++.+. ..+
T Consensus 4 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (136)
T 1mvo_A 4 KKILVVDDEE----SIVTLLQYNLERSGY--DVITASDGEEALKKAETEKPDLIVLDVML-PKLDGIEVCKQLRQQKLMF 76 (136)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEEECCH----HHHHHHHHHHHHCCc--EEEEecCHHHHHHHHhhcCCCEEEEecCC-CCCCHHHHHHHHHcCCCCC
Confidence 4666777652 345566666666654 3444443334444443 35777754331 2334566666654 356
Q ss_pred cEEEe-CCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 291 PVLGT-AAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 291 PvI~s-~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
|+|.. .... ....+..|..+++..+.+ .+++...+..++..
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 77 PILMLTAKDEEFDKVLGLELGADDYMTKPFS--PREVNARVKAILRR 121 (136)
T ss_dssp CEEEEECTTCCCCHHHHHHTTCCEEEESSCC--HHHHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHhCCCCEEEECCCC--HHHHHHHHHHHHHh
Confidence 77654 3222 223345577899999888 99999999887754
No 164
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=65.95 E-value=12 Score=26.79 Aligned_cols=110 Identities=6% Similarity=0.068 Sum_probs=64.7
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHH--HhcCEEEecCCCCCC--ccchHHHHHHHc--
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGE--CFGRITIEAMAF-- 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~--~~adv~l~ps~~~~e--~~~~~~~Ea~a~-- 288 (377)
..+++|+.+.. .....+....++.|. .+......++..+.+ ...|++++-..- .+ .-|..+++.+..
T Consensus 6 ~~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~a~~~l~~~~~dlvi~D~~l-~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 6 HPIIYLVDHQK----DARAALSKLLSPLDV--TIQCFASAESFMRQQISDDAIGMIIEAHL-EDKKDSGIELLETLVKRG 78 (136)
T ss_dssp -CEEEEECSCH----HHHHHHHHHHTTSSS--EEEEESSHHHHTTSCCCTTEEEEEEETTG-GGBTTHHHHHHHHHHHTT
T ss_pred CCeEEEEcCCH----HHHHHHHHHHHHCCc--EEEEeCCHHHHHHHHhccCCCEEEEeCcC-CCCCccHHHHHHHHHhCC
Confidence 45777777752 355666777766654 344443322222222 235777764331 33 346666666543
Q ss_pred -CCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 289 -QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 289 -g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
.+|+|.-. ... ..+.+..|..+++..+-+ .++|..+|.+++..
T Consensus 79 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 79 FHLPTIVMASSSDIPTAVRAMRASAADFIEKPFI--EHVLVHDVQQIING 126 (136)
T ss_dssp CCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBC--HHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCC--HHHHHHHHHHHHhc
Confidence 57777543 332 233445678899999988 99999999888753
No 165
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=64.70 E-value=22 Score=31.94 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=58.3
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCC-cEEEecC
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNK 253 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~g~ 253 (377)
.+.+.++++|- ..-|...++.++. +.++++++-+-+. ..+..++.+++++.+. .+...
T Consensus 81 ~~~irigiIG~--G~~g~~~~~~~l~-----------~~~~~~lvav~d~------~~~~~~~~a~~~g~~~~~~~~~-- 139 (433)
T 1h6d_A 81 DRRFGYAIVGL--GKYALNQILPGFA-----------GCQHSRIEALVSG------NAEKAKIVAAEYGVDPRKIYDY-- 139 (433)
T ss_dssp CCCEEEEEECC--SHHHHHTHHHHTT-----------TCSSEEEEEEECS------CHHHHHHHHHHTTCCGGGEECS--
T ss_pred CCceEEEEECC--cHHHHHHHHHHHh-----------hCCCcEEEEEEcC------CHHHHHHHHHHhCCCccccccc--
Confidence 34577888874 1122222344332 2267887655553 2345566677777642 12222
Q ss_pred cCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 254 TLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 254 ~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++.+++. ..|+++..+. .....-.+.+|+..|++|++-.
T Consensus 140 -~~~~~ll~~~~vD~V~iatp--~~~h~~~~~~al~aGk~Vl~EK 181 (433)
T 1h6d_A 140 -SNFDKIAKDPKIDAVYIILP--NSLHAEFAIRAFKAGKHVMCEK 181 (433)
T ss_dssp -SSGGGGGGCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEECS
T ss_pred -CCHHHHhcCCCCCEEEEcCC--chhHHHHHHHHHHCCCcEEEcC
Confidence 45666666 6899988776 4444556778999999999864
No 166
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=64.46 E-value=32 Score=23.66 Aligned_cols=107 Identities=9% Similarity=0.078 Sum_probs=61.4
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH--cCCc
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA--FQLP 291 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a--~g~P 291 (377)
.+++++.+.. .....+....+..|. .+.......+....+.. .|++++-..- .+.-|..+++.+. ..+|
T Consensus 4 ~~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 76 (123)
T 1xhf_A 4 PHILIVEDEL----VTRNTLKSIFEAEGY--DVFEATDGAEMHQILSEYDINLVIMDINL-PGKNGLLLARELREQANVA 76 (123)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHSCCSEEEECSSC-SSSCHHHHHHHHHHHCCCE
T ss_pred ceEEEEeCCH----HHHHHHHHHHhhCCc--EEEEeCCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHHhCCCCc
Confidence 3566776652 345566666666554 34443333344444433 5777754331 2334555665553 4677
Q ss_pred EEEe-CCCCc---ccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 292 VLGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 292 vI~s-~~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
+|.. ..... .+.+..|..+++..|-+ .+++...+..++
T Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 118 (123)
T 1xhf_A 77 LMFLTGRDNEVDKILGLEIGADDYITKPFN--PRELTIRARNLL 118 (123)
T ss_dssp EEEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHhcCcceEEeCCCC--HHHHHHHHHHHH
Confidence 7754 33322 23344577899999988 999999887765
No 167
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=64.36 E-value=49 Score=28.34 Aligned_cols=69 Identities=16% Similarity=0.059 Sum_probs=44.7
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++.+-+. ..+..++.+++++.+ ... .++.+++. .+|+++..+. .....-.+.+++..|++
T Consensus 32 ~~~~~vav~d~------~~~~~~~~a~~~g~~---~~~---~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~G~~ 97 (346)
T 3cea_A 32 QGVKLVAACAL------DSNQLEWAKNELGVE---TTY---TNYKDMIDTENIDAIFIVAP--TPFHPEMTIYAMNAGLN 97 (346)
T ss_dssp SSEEEEEEECS------CHHHHHHHHHTTCCS---EEE---SCHHHHHTTSCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEecC------CHHHHHHHHHHhCCC---ccc---CCHHHHhcCCCCCEEEEeCC--hHhHHHHHHHHHHCCCE
Confidence 67887655553 234555666666642 111 46777776 5899888775 34334556789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 98 v~~eK 102 (346)
T 3cea_A 98 VFCEK 102 (346)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 99854
No 168
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=63.85 E-value=20 Score=27.09 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=24.3
Q ss_pred HHHHhcCEEEecCCCCCCccchHHHH---HHHcCCcEEEe
Q 017085 259 PYLAAIDVLVQNSQAWGECFGRITIE---AMAFQLPVLGT 295 (377)
Q Consensus 259 ~~~~~adv~l~ps~~~~e~~~~~~~E---a~a~g~PvI~s 295 (377)
+.+..||+++.--.. .+.-+.+.+| |.+.|+||++-
T Consensus 65 ~~i~~aD~viA~ldg-~~~D~Gt~~EiG~A~a~gkPVi~~ 103 (162)
T 3ehd_A 65 ENVLASDLLVALLDG-PTIDAGVASEIGVAYAKGIPVVAL 103 (162)
T ss_dssp HHHHTCSEEEEECCS-SSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHCCEEEEECCC-CCCCCCHHHHHHHHHHCCCEEEEE
Confidence 458899998864321 2333445555 68999999976
No 169
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=63.69 E-value=66 Score=27.52 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=47.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+. ..+..++.++++++. +... .++.+++.. .|+++..+. ...-.-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~------~~~~~~~~~~~~g~~--~~~~---~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~ 92 (344)
T 3mz0_A 26 SGAEIVAVTDV------NQEAAQKVVEQYQLN--ATVY---PNDDSLLADENVDAVLVTSW--GPAHESSVLKAIKAQKY 92 (344)
T ss_dssp SSEEEEEEECS------SHHHHHHHHHHTTCC--CEEE---SSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcC------CHHHHHHHHHHhCCC--Ceee---CCHHHHhcCCCCCEEEECCC--chhHHHHHHHHHHCCCc
Confidence 67887755443 245566777777642 1121 567788876 899888775 44444566789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 93 vl~EK 97 (344)
T 3mz0_A 93 VFCEK 97 (344)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 99854
No 170
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=63.65 E-value=32 Score=23.42 Aligned_cols=107 Identities=9% Similarity=0.058 Sum_probs=59.1
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH--cCCcE
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPV 292 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a--~g~Pv 292 (377)
+++++.+.. .....+....+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+. ..+|+
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~i 75 (120)
T 2a9o_A 3 KILIVDDEK----PISDIIKFNMTKEGY--EVVTAFNGREALEQFEAEQPDIIILDLML-PEIDGLEVAKTIRKTSSVPI 75 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHHCCCCE
T ss_pred eEEEEcCCH----HHHHHHHHHHHhcCc--EEEEecCHHHHHHHHHhCCCCEEEEeccC-CCCCHHHHHHHHHhCCCCCE
Confidence 455565542 345556666665554 3443333233333332 35777754331 2334555555543 56787
Q ss_pred EEeC-CCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 293 LGTA-AGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 293 I~s~-~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
|... .... ...+..|..+++..+.+ .+++...+..++.
T Consensus 76 i~~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 76 LMLSAKDSEFDKVIGLELGADDYVTKPFS--NRELQARVKALLR 117 (120)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred EEEecCCchHHHHHHHhCCHhheEeCCCC--HHHHHHHHHHHHc
Confidence 7543 2221 22334577889999888 9999999887654
No 171
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=63.45 E-value=51 Score=28.57 Aligned_cols=92 Identities=13% Similarity=0.058 Sum_probs=56.9
Q ss_pred CeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCC
Q 017085 177 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT 256 (377)
Q Consensus 177 ~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~ 256 (377)
++.++.+|- ..-+...++.++. . ++++++-+-+. ..+..++.+++++.. .. ..+
T Consensus 26 ~irvgiiG~--G~~~~~~~~~~~~---~---------~~~~lvav~d~------~~~~a~~~a~~~~~~---~~---~~~ 79 (361)
T 3u3x_A 26 ELRFAAVGL--NHNHIYGQVNCLL---R---------AGARLAGFHEK------DDALAAEFSAVYADA---RR---IAT 79 (361)
T ss_dssp CCEEEEECC--CSTTHHHHHHHHH---H---------TTCEEEEEECS------CHHHHHHHHHHSSSC---CE---ESC
T ss_pred CcEEEEECc--CHHHHHHHHHHhh---c---------CCcEEEEEEcC------CHHHHHHHHHHcCCC---cc---cCC
Confidence 467777773 2223333444432 1 67888766554 245566777777532 11 157
Q ss_pred HHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 257 VAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 257 ~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
+.+++.. .|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 80 ~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 80 AEEILEDENIGLIVSAAV--SSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp HHHHHTCTTCCEEEECCC--HHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHCCCeEEEeC
Confidence 7788875 788887765 3333445679999999999864
No 172
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=62.99 E-value=50 Score=25.46 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=65.2
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cCC
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 290 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g~ 290 (377)
.+++|+.+.. .....+....+..|. .|.......+....+. ..|++++-..- .+.-|..+++.+. .++
T Consensus 5 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~l~~~~~~~ 77 (208)
T 1yio_A 5 PTVFVVDDDM----SVREGLRNLLRSAGF--EVETFDCASTFLEHRRPEQHGCLVLDMRM-PGMSGIELQEQLTAISDGI 77 (208)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHCCTTSCEEEEEESCC-SSSCHHHHHHHHHHTTCCC
T ss_pred CEEEEEcCCH----HHHHHHHHHHHhCCc--eEEEcCCHHHHHHhhhccCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCC
Confidence 4677777652 355666777766554 3443333233333333 24776653321 3345666776664 367
Q ss_pred cEEEe-CCC---CcccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 291 PVLGT-AAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 291 PvI~s-~~~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
|+|.- ... ...+.+..|..+++..+.+ .+++..+|..++..
T Consensus 78 ~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 78 PIVFITAHGDIPMTVRAMKAGAIEFLPKPFE--EQALLDAIEQGLQL 122 (208)
T ss_dssp CEEEEESCTTSCCCHHHHHTTEEEEEESSCC--HHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHCCCcEEEeCCCC--HHHHHHHHHHHHhh
Confidence 87754 222 2334455677899999988 99999999888764
No 173
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=62.29 E-value=51 Score=28.39 Aligned_cols=68 Identities=7% Similarity=0.064 Sum_probs=46.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHH--HhcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~--~~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+. ..+..++.+++++.+. ..++.+++ ...|+++..+. ...-.-.+.+|+..|++
T Consensus 28 ~~~~lvav~d~------~~~~~~~~~~~~g~~~-------~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 92 (354)
T 3db2_A 28 EKLKLVTCYSR------TEDKREKFGKRYNCAG-------DATMEALLAREDVEMVIITVP--NDKHAEVIEQCARSGKH 92 (354)
T ss_dssp SSEEEEEEECS------SHHHHHHHHHHHTCCC-------CSSHHHHHHCSSCCEEEECSC--TTSHHHHHHHHHHTTCE
T ss_pred CCcEEEEEECC------CHHHHHHHHHHcCCCC-------cCCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHcCCE
Confidence 67887755443 2355666667766531 25788888 45888887775 34444556789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 93 vl~EK 97 (354)
T 3db2_A 93 IYVEK 97 (354)
T ss_dssp EEEES
T ss_pred EEEcc
Confidence 99865
No 174
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=61.24 E-value=7.9 Score=30.42 Aligned_cols=37 Identities=24% Similarity=0.180 Sum_probs=25.0
Q ss_pred HHHHHhcCEEEecCCCCCCccc--hHHHHHHHcCCcEEEeCCC
Q 017085 258 APYLAAIDVLVQNSQAWGECFG--RITIEAMAFQLPVLGTAAG 298 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~--~~~~Ea~a~g~PvI~s~~~ 298 (377)
.-+...||.+|.-- .++| ..+.||+..++||+.-+..
T Consensus 113 ~~m~~~sda~Ivlp----GG~GTL~E~~eal~~~kPV~lln~~ 151 (195)
T 1rcu_A 113 FVLLRNADVVVSIG----GEIGTAIEILGAYALGKPVILLRGT 151 (195)
T ss_dssp HHHHTTCSEEEEES----CCHHHHHHHHHHHHTTCCEEEETTS
T ss_pred HHHHHhCCEEEEec----CCCcHHHHHHHHHhcCCCEEEECCC
Confidence 34556788876422 2344 3466899999999999643
No 175
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=61.16 E-value=36 Score=23.21 Aligned_cols=107 Identities=10% Similarity=0.111 Sum_probs=59.3
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cCCc
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQLP 291 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g~P 291 (377)
+++++.+.. .....+....+..|.. .+.......+....+. ..|++++-..- .+.-|..+++.+. .+.|
T Consensus 4 ~ilivdd~~----~~~~~l~~~l~~~g~~-vv~~~~~~~~a~~~~~~~~~dlil~D~~l-~~~~g~~~~~~l~~~~~~~~ 77 (120)
T 1tmy_A 4 RVLIVDDAA----FMRMMLKDIITKAGYE-VAGEATNGREAVEKYKELKPDIVTMDITM-PEMNGIDAIKEIMKIDPNAK 77 (120)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHCCSEEEEECSC-GGGCHHHHHHHHHHHCTTCC
T ss_pred eEEEEcCcH----HHHHHHHHHHhhcCcE-EEEEECCHHHHHHHHHhcCCCEEEEeCCC-CCCcHHHHHHHHHhhCCCCe
Confidence 566666642 3455666666665542 1222332233333333 35777753320 2334556666553 4677
Q ss_pred EEEe-CCCCc---ccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 292 VLGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 292 vI~s-~~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
+|.. ..... .+....|..+++..|-+ .+++.+++.+++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~i~~~~ 119 (120)
T 1tmy_A 78 IIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ--PSRVVEALNKVS 119 (120)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCC--HHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHhCcceeEeCCCC--HHHHHHHHHHHh
Confidence 7654 33322 23344577889999888 999999887754
No 176
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=61.15 E-value=35 Score=23.08 Aligned_cols=106 Identities=7% Similarity=0.070 Sum_probs=60.0
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---cCCc
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQLP 291 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~g~P 291 (377)
+++++.+.. .....+....+..|. .+.......+..+.+.. .|++++-..- .+.-|..+++.+. ...|
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~a~~~~~~~~~dlvl~D~~l-~~~~g~~~~~~l~~~~~~~~ 75 (116)
T 3a10_A 3 RILVVDDEP----NIRELLKEELQEEGY--EIDTAENGEEALKKFFSGNYDLVILDIEM-PGISGLEVAGEIRKKKKDAK 75 (116)
T ss_dssp EEEEECSCH----HHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHSCCSEEEECSCC-SSSCHHHHHHHHHHHCTTCC
T ss_pred EEEEEeCCH----HHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCCEEEEECCC-CCCCHHHHHHHHHccCCCCe
Confidence 455666542 345666666666554 35444433444444433 5777654331 2334566666553 3567
Q ss_pred EEEe-CCCC-cccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 292 VLGT-AAGG-TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 292 vI~s-~~~~-~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
+|.. .... ..+....|..+++..+.+ .+++..++.+++
T Consensus 76 ii~~s~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~ 115 (116)
T 3a10_A 76 IILLTAYSHYRSDMSSWAADEYVVKSFN--FDELKEKVKKLL 115 (116)
T ss_dssp EEEEESCGGGGGCGGGGGSSEEEECCSS--THHHHHHHHHHT
T ss_pred EEEEECCcchHHHHHhccccceEECCCC--HHHHHHHHHHHh
Confidence 7643 2221 133444567889999887 899999887764
No 177
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=60.95 E-value=20 Score=31.21 Aligned_cols=69 Identities=13% Similarity=0.005 Sum_probs=43.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhc--CEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~a--dv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+. ..+..++.+++++.. .. ..++.+++... |+++..+. ...-.-.+.+|+..|++
T Consensus 29 ~~~~l~av~d~------~~~~~~~~a~~~~~~---~~---~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aGkh 94 (359)
T 3m2t_A 29 QDIRIVAACDS------DLERARRVHRFISDI---PV---LDNVPAMLNQVPLDAVVMAGP--PQLHFEMGLLAMSKGVN 94 (359)
T ss_dssp TTEEEEEEECS------SHHHHGGGGGTSCSC---CE---ESSHHHHHHHSCCSEEEECSC--HHHHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcC------CHHHHHHHHHhcCCC---cc---cCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCe
Confidence 67888744443 134444444444321 11 15788888865 88887765 33344556789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 95 Vl~EK 99 (359)
T 3m2t_A 95 VFVEK 99 (359)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99864
No 178
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=60.50 E-value=17 Score=30.61 Aligned_cols=43 Identities=12% Similarity=-0.109 Sum_probs=32.4
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~ 299 (377)
+++.+++..+|+++--|. .+..--.+..++..|+|+|+..+|-
T Consensus 80 ~dl~~ll~~aDVvIDFT~--p~a~~~~~~~~l~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQ--PQASVLYANYAAQKSLIHIIGTTGF 122 (288)
T ss_dssp SCHHHHTTSCSEEEECSC--HHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CCHHHHhcCCCEEEEcCC--HHHHHHHHHHHHHcCCCEEEECCCC
Confidence 578888889999996665 4444444567899999999876654
No 179
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=60.13 E-value=56 Score=27.98 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=46.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+. ..+..++.+++++ +... .++.+++. .+|+++..+. .....-.+.+|+..|++
T Consensus 27 ~~~~l~av~d~------~~~~~~~~a~~~g----~~~~---~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 91 (344)
T 3euw_A 27 PDLELVVIADP------FIEGAQRLAEANG----AEAV---ASPDEVFARDDIDGIVIGSP--TSTHVDLITRAVERGIP 91 (344)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHTTT----CEEE---SSHHHHTTCSCCCEEEECSC--GGGHHHHHHHHHHTTCC
T ss_pred CCcEEEEEECC------CHHHHHHHHHHcC----Ccee---CCHHHHhcCCCCCEEEEeCC--chhhHHHHHHHHHcCCc
Confidence 67887755443 2355566666665 2222 57778887 7899888775 44444567789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 92 v~~EK 96 (344)
T 3euw_A 92 ALCEK 96 (344)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99865
No 180
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=60.08 E-value=20 Score=30.69 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=41.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+..+ +..++.+++++.+. ...++.+++. ..|+++..+. ...-.-.+.+|+..|++
T Consensus 28 ~~~~~~av~d~~~------~~~~~~a~~~~~~~------~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 93 (329)
T 3evn_A 28 GNGEVVAVSSRTL------ESAQAFANKYHLPK------AYDKLEDMLADESIDVIYVATI--NQDHYKVAKAALLAGKH 93 (329)
T ss_dssp CSEEEEEEECSCS------STTCC---CCCCSC------EESCHHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcCCH------HHHHHHHHHcCCCc------ccCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCe
Confidence 6787775544322 12233344444321 1257788887 7899888775 34444556789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 94 Vl~EK 98 (329)
T 3evn_A 94 VLVEK 98 (329)
T ss_dssp EEEES
T ss_pred EEEcc
Confidence 99865
No 181
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=59.67 E-value=94 Score=27.51 Aligned_cols=71 Identities=7% Similarity=-0.068 Sum_probs=47.2
Q ss_pred CCeEEEE-EecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh-------cCEEEecCCCCCCccchHHHHH
Q 017085 214 PSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEA 285 (377)
Q Consensus 214 ~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~-------adv~l~ps~~~~e~~~~~~~Ea 285 (377)
++++++- +-+. ..+..++.+++++++.. ....++.+++.. .|+++..+. ...-.-.+.+|
T Consensus 63 ~~~~lva~v~d~------~~~~a~~~a~~~g~~~~----~~~~~~~~ll~~~~~~~~~vD~V~I~tp--~~~H~~~~~~a 130 (417)
T 3v5n_A 63 DHYELVAGALSS------TPEKAEASGRELGLDPS----RVYSDFKEMAIREAKLKNGIEAVAIVTP--NHVHYAAAKEF 130 (417)
T ss_dssp SCEEEEEEECCS------SHHHHHHHHHHHTCCGG----GBCSCHHHHHHHHHHCTTCCSEEEECSC--TTSHHHHHHHH
T ss_pred CCcEEEEEEeCC------CHHHHHHHHHHcCCCcc----cccCCHHHHHhcccccCCCCcEEEECCC--cHHHHHHHHHH
Confidence 5677663 4332 24566777778876421 112578888877 899888776 44444567789
Q ss_pred HHcCCcEEEeC
Q 017085 286 MAFQLPVLGTA 296 (377)
Q Consensus 286 ~a~g~PvI~s~ 296 (377)
+..|++|++-.
T Consensus 131 l~aGkhVl~EK 141 (417)
T 3v5n_A 131 LKRGIHVICDK 141 (417)
T ss_dssp HTTTCEEEEES
T ss_pred HhCCCeEEEEC
Confidence 99999999864
No 182
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=59.48 E-value=26 Score=30.58 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=58.6
Q ss_pred CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcC
Q 017085 176 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 255 (377)
Q Consensus 176 ~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~ 255 (377)
.++.|+.+|-=.-.+ .-+.++..+...+. ..++++++=+-+. ..+..++.+++++.+ ... .
T Consensus 24 kkirvgiIG~G~ig~---~H~~a~~~~~~~~~----~~~~~~lvav~d~------~~~~a~~~a~~~g~~---~~y---~ 84 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGK---CHALAWNAVKTVFG----DVERPRLVHLAEA------NAGLAEARAGEFGFE---KAT---A 84 (393)
T ss_dssp CCCEEEEECCSHHHH---HHHHHHTTHHHHHC----SSCCCEEEEEECC--------TTHHHHHHHHTCS---EEE---S
T ss_pred CCccEEEEcCCHHHH---HHHHHHHhhhhhhc----cCCCcEEEEEECC------CHHHHHHHHHHhCCC---eec---C
Confidence 456777777321112 23344443332222 2367787766554 234556677777764 111 5
Q ss_pred CHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 256 TVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 256 ~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
++.++++. .|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 85 d~~ell~~~~iDaV~IatP--~~~H~~~a~~al~aGkhVl~EK 125 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTTP--NQFHAEMAIAALEAGKHVWCEK 125 (393)
T ss_dssp CHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEECS
T ss_pred CHHHHhcCCCCcEEEECCC--hHHHHHHHHHHHhcCCeEEEcc
Confidence 67788864 678887775 4444556789999999999864
No 183
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=59.41 E-value=7 Score=35.12 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.3
Q ss_pred cHhhHHHhcCceEEEEEecC
Q 017085 2 ELAFLLRGVGTKVNWITIQK 21 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~ 21 (377)
.|+++|+++||+|++++...
T Consensus 39 ~la~~L~~~GheV~~~~~~~ 58 (441)
T 2yjn_A 39 PLAWAFRAAGHEVRVVASPA 58 (441)
T ss_dssp HHHHHHHHTTCEEEEEECGG
T ss_pred HHHHHHHHCCCeEEEEeCch
Confidence 47999999999999999653
No 184
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=58.93 E-value=48 Score=26.08 Aligned_cols=109 Identities=10% Similarity=0.092 Sum_probs=64.3
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH--cCCc
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLP 291 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a--~g~P 291 (377)
.+++|+.+.. .....+....+..|. .|......++..+.+. ..|++++-..- .+.-|..+++.+. ..+|
T Consensus 5 ~~ilivdd~~----~~~~~l~~~L~~~g~--~v~~~~~~~~al~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~~~ 77 (230)
T 2oqr_A 5 TSVLIVEDEE----SLADPLAFLLRKEGF--EATVVTDGPAALAEFDRAGADIVLLDLML-PGMSGTDVCKQLRARSSVP 77 (230)
T ss_dssp CEEEEECSCH----HHHHHHHHHHHHTTC--EEEEECSHHHHHHHHHHHCCSEEEEESSC-SSSCHHHHHHHHHHHCSCS
T ss_pred CeEEEEeCCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHhccCCCEEEEECCC-CCCCHHHHHHHHHcCCCCC
Confidence 4667776652 355666777766554 3444433334444443 35777754321 2334556665553 4688
Q ss_pred EEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 292 VLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 292 vI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
+|.-.... ..+.+..|..|++..+.+ .+++..+|..++..
T Consensus 78 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~--~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 78 VIMVTARDSEIDKVVGLELGADDYVTKPYS--ARELIARIRAVLRR 121 (230)
T ss_dssp EEEEECCHHHHHHHHHHHHCCSCCCCSSCC--HHHHHHHHHHHHTT
T ss_pred EEEEeCCCcHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHhh
Confidence 77543222 223344577889998887 99999999988753
No 185
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=58.82 E-value=80 Score=27.83 Aligned_cols=102 Identities=11% Similarity=0.035 Sum_probs=61.4
Q ss_pred CCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 175 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 175 ~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
.+++.|+.+|-= .-| ...++++.++...+.+ -.++++++-+.+. ..++.++.+++++.+ ...
T Consensus 24 s~klrvgiIG~G--~ig-~~h~~~~~~~~~~~~~---~~~~~elvav~d~------~~~~a~~~a~~~~~~---~~y--- 85 (412)
T 4gqa_A 24 SARLNIGLIGSG--FMG-QAHADAYRRAAMFYPD---LPKRPHLYALADQ------DQAMAERHAAKLGAE---KAY--- 85 (412)
T ss_dssp -CEEEEEEECCS--HHH-HHHHHHHHHHHHHCTT---SSSEEEEEEEECS------SHHHHHHHHHHHTCS---EEE---
T ss_pred cccceEEEEcCc--HHH-HHHHHHHHhccccccc---cCCCeEEEEEEcC------CHHHHHHHHHHcCCC---eEE---
Confidence 456888888732 122 2345566544322111 0135676655553 346677788888764 111
Q ss_pred CCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 255 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 255 ~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++.++++ ..|+++..+. ...-.-.+++|+..|++|++-.
T Consensus 86 ~d~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkhVl~EK 127 (412)
T 4gqa_A 86 GDWRELVNDPQVDVVDITSP--NHLHYTMAMAAIAAGKHVYCEK 127 (412)
T ss_dssp SSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred CCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHcCCCeEeec
Confidence 46777886 4678877765 4444456789999999999865
No 186
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=58.45 E-value=62 Score=25.08 Aligned_cols=111 Identities=10% Similarity=0.046 Sum_probs=62.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcE-EEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV-HFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF-- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v-~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~-- 288 (377)
...+++|+.+.+ .....+....+..+- ..+ .......+..+.+. ..|++++-..- .+.-|..+++.+..
T Consensus 4 ~~~~ilivdd~~----~~~~~l~~~L~~~~~-~~vv~~~~~~~~al~~~~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~ 77 (215)
T 1a04_A 4 EPATILLIDDHP----MLRTGVKQLISMAPD-ITVVGEASNGEQGIELAESLDPDLILLDLNM-PGMNGLETLDKLREKS 77 (215)
T ss_dssp CCEEEEEECSCH----HHHHHHHHHHTTCTT-EEEEEEESSHHHHHHHHHHHCCSEEEEETTS-TTSCHHHHHHHHHHSC
T ss_pred CceEEEEECCCH----HHHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHhcCCCEEEEeCCC-CCCcHHHHHHHHHHhC
Confidence 346777777752 344555555554321 112 22222233334443 35777753321 33346667766643
Q ss_pred -CCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 -QLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 -g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.+|+|.-. ... ..+.+..|..|++..+.+ .+++..+|..++.
T Consensus 78 ~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 124 (215)
T 1a04_A 78 LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDME--PEDLLKALHQAAA 124 (215)
T ss_dssp CCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCC--HHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCC--HHHHHHHHHHHHc
Confidence 56766543 322 223344577899999988 9999999998875
No 187
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=58.40 E-value=52 Score=27.92 Aligned_cols=69 Identities=10% Similarity=0.013 Sum_probs=44.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHH-HhcCEEEecCCCCCCccchHHHHHHHcCCcE
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPV 292 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~-~~adv~l~ps~~~~e~~~~~~~Ea~a~g~Pv 292 (377)
++++++-+-+. ..+..++.+++++.. ... .++.+++ ..+|+++..+. .....-.+.+|+..|++|
T Consensus 24 ~~~~~~~v~d~------~~~~~~~~~~~~~~~---~~~---~~~~~~l~~~~D~V~i~tp--~~~h~~~~~~al~~gk~V 89 (325)
T 2ho3_A 24 GEYQLVAIYSR------KLETAATFASRYQNI---QLF---DQLEVFFKSSFDLVYIASP--NSLHFAQAKAALSAGKHV 89 (325)
T ss_dssp TSEEEEEEECS------SHHHHHHHGGGSSSC---EEE---SCHHHHHTSSCSEEEECSC--GGGHHHHHHHHHHTTCEE
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCC---eEe---CCHHHHhCCCCCEEEEeCC--hHHHHHHHHHHHHcCCcE
Confidence 67777654443 234455566666531 121 4667777 67899988776 444455677899999999
Q ss_pred EEeC
Q 017085 293 LGTA 296 (377)
Q Consensus 293 I~s~ 296 (377)
++-.
T Consensus 90 ~~EK 93 (325)
T 2ho3_A 90 ILEK 93 (325)
T ss_dssp EEES
T ss_pred EEec
Confidence 9864
No 188
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=58.20 E-value=30 Score=29.58 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=51.7
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccc-eecC-cce-----eeecCCCCChhHHHHHHHHH
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEI-VVNG-TTG-----LLHPVGKEGITPLAKNIVKL 330 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~-~~~~-~~g-----~~~~~~~~~~~~la~~i~~l 330 (377)
..-++.||+++..... .|++--.++++.. +.++|....+ +.-+ ..++ ..| +..++.+ ...+++.|...
T Consensus 89 ~~~l~~ADlvv~nG~~-lE~wl~k~~~~~~-~~~~v~~s~g-i~~~~~~~~~~~~~~DPHvWldp~n--~~~~a~~I~~~ 163 (321)
T 1xvl_A 89 IVKAQDADLILYNGMN-LERWFEQFLGNVK-DVPSVVLTEG-IEPIPIADGPYTDKPNPHAWMSPRN--ALVYVENIRQA 163 (321)
T ss_dssp HHHHHTCSEEEECCTT-SSTTHHHHHHTSS-SCCEEETTTT-CCCCBCCSSSSTTSBCCCGGGSHHH--HHHHHHHHHHH
T ss_pred HHHHhcCCEEEECCCC-hHHHHHHHHHhcC-CCcEEEccCC-cccccccccCCCCCCCCCcCCCHHH--HHHHHHHHHHH
Confidence 3567899999987653 6777777777766 6666644322 2111 0000 011 2333333 66777777766
Q ss_pred hh--CHHHHHHHHHHHHHHHHH
Q 017085 331 AT--HVERRLTMGKRGYERVKE 350 (377)
Q Consensus 331 ~~--~~~~~~~~~~~~~~~~~~ 350 (377)
|. ||+......+|+.++..+
T Consensus 164 L~~~DP~~a~~Y~~Na~~~~~~ 185 (321)
T 1xvl_A 164 FVELDPDNAKYYNANAAVYSEQ 185 (321)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHCcccHHHHHHHHHHHHHH
Confidence 65 887777777777665543
No 189
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=57.46 E-value=48 Score=23.46 Aligned_cols=109 Identities=8% Similarity=0.015 Sum_probs=62.4
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH------
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA------ 287 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a------ 287 (377)
.+++|+.+.. .....+....+..+. .+.......+....+.. .|++++-..- .+.-|..+++.+.
T Consensus 11 ~~iLivdd~~----~~~~~l~~~L~~~~~--~v~~~~~~~~al~~l~~~~~dlvllD~~l-p~~~g~~~~~~l~~~~~~~ 83 (140)
T 3c97_A 11 LSVLIAEDND----ICRLVAAKALEKCTN--DITVVTNGLQALQAYQNRQFDVIIMDIQM-PVMDGLEAVSEIRNYERTH 83 (140)
T ss_dssp CEEEEECCCH----HHHHHHHHHHTTTCS--EEEEESSHHHHHHHHHHSCCSEEEECTTC-CSSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCH----HHHHHHHHHHHHcCC--ceEEECCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHhhhhhc
Confidence 4677776652 345555666655443 35554443444444433 5887764331 2334566666664
Q ss_pred --cCCcEEEe-CCCCcccceecCcceeeecCCCCChhHHHHHHHHHhhC
Q 017085 288 --FQLPVLGT-AAGGTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLATH 333 (377)
Q Consensus 288 --~g~PvI~s-~~~~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~ 333 (377)
..+|+|.. ...........+..+++..+.+ .++|..+|.+++..
T Consensus 84 ~~~~~~ii~~s~~~~~~~~~~~g~~~~l~KP~~--~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 84 NTKRASIIAITADTIDDDRPGAELDEYVSKPLN--PNQLRDVVLTCHSE 130 (140)
T ss_dssp TCCCCCCEEEESSCCSCCCCCSSCSEEEESSCC--HHHHHHHHHHHHC-
T ss_pred CCCceEEEEEeCccchhHHHhCChhheEeCCCC--HHHHHHHHHHHhCC
Confidence 24566653 3332223334456789999988 99999999887653
No 190
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=56.79 E-value=45 Score=28.44 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=46.1
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCcE
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPV 292 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~Pv 292 (377)
+++++-+.+. ..+..++.+++++.+. + ..++.+++. ..|+++..+. ...-.-.+.+|+..|++|
T Consensus 28 ~~~l~av~d~------~~~~a~~~a~~~~~~~-~-----~~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~~GkhV 93 (334)
T 3ohs_X 28 EHQVVAVAAR------DLSRAKEFAQKHDIPK-A-----YGSYEELAKDPNVEVAYVGTQ--HPQHKAAVMLCLAAGKAV 93 (334)
T ss_dssp TEEEEEEECS------SHHHHHHHHHHHTCSC-E-----ESSHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHHTTCEE
T ss_pred CeEEEEEEcC------CHHHHHHHHHHcCCCc-c-----cCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHhcCCEE
Confidence 4676655553 2455667777777641 1 257778887 5899888775 343445577899999999
Q ss_pred EEeC
Q 017085 293 LGTA 296 (377)
Q Consensus 293 I~s~ 296 (377)
++-.
T Consensus 94 l~EK 97 (334)
T 3ohs_X 94 LCEK 97 (334)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9865
No 191
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=56.62 E-value=29 Score=29.42 Aligned_cols=88 Identities=10% Similarity=0.024 Sum_probs=50.1
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCcccce-ec-Ccce-----eeecCCCCChhHHHHHHHHH
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIV-VN-GTTG-----LLHPVGKEGITPLAKNIVKL 330 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~-~~-~~~g-----~~~~~~~~~~~~la~~i~~l 330 (377)
..-++.||+++..... .|++--.++++.. +.++|.... ++..+- .+ ...| +..++.+ ...++++|...
T Consensus 75 ~~~l~~ADlvv~nG~~-lE~wl~k~~~~~~-~~~~v~~s~-gi~~~~~~~~~~~~~~DPHvWldp~n--~~~~a~~I~~~ 149 (307)
T 3ujp_A 75 IVKAQDADLILYNGMN-LERWFEQFLGNVK-DVPSVVLTE-GIEPIPIADGPYTDKPNPHAWMSPRN--ALVYVENIRQA 149 (307)
T ss_dssp HHHHHHCSEEEECCTT-SSTTHHHHHHTSC-SCCEEETTT-TCCCCBCCSSSSTTSBCCCCTTCHHH--HHHHHHHHHHH
T ss_pred HHHHhcCCEEEEcCCC-hHHHHHHHHHhCC-CCCEEEeeC-CccccccccccCCCCCCCCcCCCHHH--HHHHHHHHHHH
Confidence 3667889999987653 6777777776652 455554432 221110 00 0011 2333334 66777777766
Q ss_pred hh--CHHHHHHHHHHHHHHHHH
Q 017085 331 AT--HVERRLTMGKRGYERVKE 350 (377)
Q Consensus 331 ~~--~~~~~~~~~~~~~~~~~~ 350 (377)
|. ||+......+|+.++..+
T Consensus 150 L~~~DP~~a~~Y~~Na~~~~~~ 171 (307)
T 3ujp_A 150 FVELDPDNAKYYNANAAVYSEQ 171 (307)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHH
Confidence 65 887777777777665543
No 192
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=56.62 E-value=85 Score=26.06 Aligned_cols=64 Identities=13% Similarity=-0.016 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHH-HcCCcEEEeCC
Q 017085 230 KFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 297 (377)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~-a~g~PvI~s~~ 297 (377)
+..+.+++.+++.|++--..+... ..+..+-..+|++-.+|. +.-...+++++ ..|+||+.++-
T Consensus 89 ~gl~~l~~~~~~~Gl~~~te~~d~-~~~~~l~~~vd~~kIgs~---~~~n~~ll~~~a~~~kPV~lk~G 153 (276)
T 1vs1_A 89 EGLKLLRRAGDEAGLPVVTEVLDP-RHVETVSRYADMLQIGAR---NMQNFPLLREVGRSGKPVLLKRG 153 (276)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCG-GGHHHHHHHCSEEEECGG---GTTCHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHHHHHHHHcCCcEEEecCCH-HHHHHHHHhCCeEEECcc---cccCHHHHHHHHccCCeEEEcCC
Confidence 456778888999998733333332 334334344899999996 55555566544 58999999863
No 193
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=56.42 E-value=45 Score=28.31 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=49.2
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHHHHHc-CCcEEEeCCCCcccc--eec-------C--------cceeeecCCCCC
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEI--VVN-------G--------TTGLLHPVGKEG 319 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~-g~PvI~s~~~~~~e~--~~~-------~--------~~g~~~~~~~~~ 319 (377)
..-++.||+++..... .|++--.+++++.. ++++|.... ++.-+ -.+ + +-=+..++.+
T Consensus 65 ~~~l~~ADlvv~~G~~-lE~w~~k~~~~~~~~~~~~v~~s~-~i~~~~~~~~~~~~~~~~~~~~~~~~DPHvWldp~n-- 140 (312)
T 2o1e_A 65 IANIQDADLFVYNSEY-METWVPSAEKSMGQGHAVFVNASK-GIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVL-- 140 (312)
T ss_dssp HHHHHHSSEEEESCTT-TSTTHHHHHHTTCSSSCEEEETTT-TCCCCCC----------------CCCCCGGGGSHHH--
T ss_pred HHHHhcCCEEEEcCCC-hHhHHHHHHHhcccCCCeEEEecC-CcccccCcccccccccccccccCCCCCCCcccCHHH--
Confidence 3567889999987653 67777777776643 344443321 22110 000 0 0002233333
Q ss_pred hhHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 017085 320 ITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 350 (377)
Q Consensus 320 ~~~la~~i~~l~~--~~~~~~~~~~~~~~~~~~ 350 (377)
...+++.|...|. ||+......+|+.++..+
T Consensus 141 ~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~ 173 (312)
T 2o1e_A 141 AQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAK 173 (312)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 5667777776665 787777777777665543
No 194
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=56.39 E-value=27 Score=28.06 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=51.5
Q ss_pred cCCCeEEEEEecCCCcccHHHHHHHHHH----HhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHH-
Q 017085 212 EVPSVHAVIIGSDMNAQTKFESELRNYV----MQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM- 286 (377)
Q Consensus 212 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~----~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~- 286 (377)
.++++.+.++|.|....++..++....+ +++ .-|++++-|-+..-+.|...-|.+
T Consensus 29 dRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~~~--------------------~pDfvI~isPN~a~PGP~~ARE~l~ 88 (283)
T 1qv9_A 29 DREDVEFRVVGTSVKMDPECVEAAVEMALDIAEDF--------------------EPDFIVYGGPNPAAPGPSKAREMLA 88 (283)
T ss_dssp CCSSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHH--------------------CCSEEEEECSCTTSHHHHHHHHHHH
T ss_pred ccCCceEEEeccCCCCCHHHHHHHHHHhhhhhhhc--------------------CCCEEEEECCCCCCCCchHHHHHHH
Confidence 4479999999999766554444433332 232 235555444422445566677877
Q ss_pred HcCCcEEE-eCCCCc--ccceecCcceeeecCCC
Q 017085 287 AFQLPVLG-TAAGGT--TEIVVNGTTGLLHPVGK 317 (377)
Q Consensus 287 a~g~PvI~-s~~~~~--~e~~~~~~~g~~~~~~~ 317 (377)
+.|+|+|+ ||.++. .+-+++.+-|+++-..|
T Consensus 89 ~~~iP~IvI~D~p~~K~kd~l~~~g~GYIivk~D 122 (283)
T 1qv9_A 89 DSEYPAVIIGDAPGLKVKDEMEEQGLGYILVKPD 122 (283)
T ss_dssp TSSSCEEEEEEGGGGGGHHHHHHTTCEEEEETTS
T ss_pred hCCCCEEEEcCCcchhhHHHHHhcCCcEEEEecC
Confidence 58899775 555543 34455566788776554
No 195
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=56.00 E-value=78 Score=27.31 Aligned_cols=70 Identities=10% Similarity=0.130 Sum_probs=45.2
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+.. .+..++.++++++. +... .++.+++. ..|+++..+. ...-.-.+.+|+..|++
T Consensus 47 ~~~~lvav~d~~------~~~~~~~a~~~g~~--~~~~---~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 113 (357)
T 3ec7_A 47 SGVEVVAVCDIV------AGRAQAALDKYAIE--AKDY---NDYHDLINDKDVEVVIITAS--NEAHADVAVAALNANKY 113 (357)
T ss_dssp TTEEEEEEECSS------TTHHHHHHHHHTCC--CEEE---SSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEeCC------HHHHHHHHHHhCCC--Ceee---CCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCC
Confidence 678877555532 23445566666642 1121 56778887 4899888775 44444567789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 114 Vl~EK 118 (357)
T 3ec7_A 114 VFCEK 118 (357)
T ss_dssp EEEES
T ss_pred EEeec
Confidence 99764
No 196
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=55.92 E-value=61 Score=27.76 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=46.1
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+. ..+..++.+++++.+ .. ..++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 25 ~~~~l~av~d~------~~~~~~~~~~~~~~~---~~---~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 90 (344)
T 3ezy_A 25 DDAILYAISDV------REDRLREMKEKLGVE---KA---YKDPHELIEDPNVDAVLVCSS--TNTHSELVIACAKAKKH 90 (344)
T ss_dssp TTEEEEEEECS------CHHHHHHHHHHHTCS---EE---ESSHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEECC------CHHHHHHHHHHhCCC---ce---eCCHHHHhcCCCCCEEEEcCC--CcchHHHHHHHHhcCCe
Confidence 67887755443 234556666666642 11 257788888 7899988775 44444456789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 91 v~~EK 95 (344)
T 3ezy_A 91 VFCEK 95 (344)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99765
No 197
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=55.82 E-value=48 Score=23.01 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=58.8
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhc-CCCCcEE-EecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH----
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVH-FVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---- 287 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~-~~~~~v~-~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---- 287 (377)
.+++++.+.. .....+....+.. +. .+. ......+..+++. ..|++++-..- .+.-|..+++.+.
T Consensus 3 ~~ilivdd~~----~~~~~l~~~l~~~~~~--~~~~~~~~~~~a~~~~~~~~~dlvllD~~l-~~~~g~~~~~~l~~~~~ 75 (130)
T 1dz3_A 3 IKVCIADDNR----ELVSLLDEYISSQPDM--EVIGTAYNGQDCLQMLEEKRPDILLLDIIM-PHLDGLAVLERIRAGFE 75 (130)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHTSTTE--EEEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHHCS
T ss_pred eEEEEEcCCH----HHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHhcCCCCEEEEecCC-CCCCHHHHHHHHHhcCC
Confidence 4566666542 3455555655543 21 122 2222234444443 35777753321 2334566666654
Q ss_pred cCCcEEE-eCCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 288 FQLPVLG-TAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 288 ~g~PvI~-s~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
...|+|. |.... ..+.+..|..+++..+.+ .+++..+|.+++.
T Consensus 76 ~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 76 HQPNVIMLTAFGQEDVTKKAVELGASYFILKPFD--MENLAHHIRQVYG 122 (130)
T ss_dssp SCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSC--CTTHHHHHHHHHH
T ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHhc
Confidence 2456654 33332 223344577899999887 8999999988765
No 198
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=55.73 E-value=76 Score=26.92 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=56.1
Q ss_pred HHHHhcCEEEecCCCCCCccchHHHHHHHcCCc-EEEeCCCCccc--ceec--C--cceeeecCCCCChhHHHHHHHHHh
Q 017085 259 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP-VLGTAAGGTTE--IVVN--G--TTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 259 ~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~P-vI~s~~~~~~e--~~~~--~--~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
.-++.||+++..... .|++--.++++.. +.+ +|.... ++.. .-.+ + +-=+..++.+ ...+++.|...|
T Consensus 83 ~~l~~ADlvv~~G~~-lE~w~~~~~~~~~-~~~~~v~~s~-~i~~~~~~~~~~~~~DPHvWldp~n--~~~~a~~I~~~L 157 (313)
T 1toa_A 83 EWLGNADLILYNGLH-LETKMGEVFSKLR-GSRLVVAVSE-TIPVSQRLSLEEAEFDPHVWFDVKL--WSYSVKAVYESL 157 (313)
T ss_dssp HHHHHCSEEEECCTT-CSTTCHHHHHHHT-TSSEEEEGGG-GSCGGGSCBSTTSCBCCCGGGSHHH--HHHHHHHHHHHH
T ss_pred HHHHcCCEEEEcCCC-cHHHHHHHHHhcc-CCCeEEEeec-CcccccccccCCCCCCCceeCCHHH--HHHHHHHHHHHH
Confidence 557899999987753 7888888888876 444 443321 1111 1000 0 1112333333 667777777666
Q ss_pred h--CHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017085 332 T--HVERRLTMGKRGYERVKEIFQEHHMAERIAVVL 365 (377)
Q Consensus 332 ~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 365 (377)
. ||+......+|+.++..+ ++..-+++.+.+
T Consensus 158 ~~~DP~~a~~Y~~N~~~~~~~---L~~Ld~~~~~~l 190 (313)
T 1toa_A 158 CKLLPGKTREFTQRYQAYQQQ---LDKLDAYVRRKA 190 (313)
T ss_dssp HHHCGGGHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHChhhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 5 888777777777665543 444444444333
No 199
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=55.27 E-value=17 Score=25.12 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=59.5
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHH---HcCCc
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAM---AFQLP 291 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~---a~g~P 291 (377)
+++++.+.. .....+.......|.. +.......+....+. ..|++++-..- ...-|..+++.+ ..++|
T Consensus 5 ~ilivdd~~----~~~~~l~~~l~~~~~~--v~~~~~~~~~~~~~~~~~~dlvi~d~~~-~~~~g~~~~~~l~~~~~~~~ 77 (124)
T 1dc7_A 5 IVWVVDDDS----SIRWVLERALAGAGLT--CTTFENGNEVLAALASKTPDVLLSDIRM-PGMDGLALLKQIKQRHPMLP 77 (124)
T ss_dssp CCEEECSSS----SHHHHHHHHHTTTTCC--CEECCCTTHHHHHSSSCCCSCEEECSCS-SHHHHCSTHHHHHHHCTTSC
T ss_pred EEEEEeCCH----HHHHHHHHHHHhCCcE--EEEeCCHHHHHHHHhcCCCCEEEEeeec-CCCCHHHHHHHHHhhCCCCC
Confidence 456666653 3556666666665543 444443344545443 35777754330 111233344444 34577
Q ss_pred EEEe-CCC---CcccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 292 VLGT-AAG---GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 292 vI~s-~~~---~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
+|.. ... ...+.+..|..+++..+-+ .+++...+..++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~--~~~l~~~i~~~~ 119 (124)
T 1dc7_A 78 VIIMTAHSDLDAAVSAYQQGAFDYLPKPFD--IDEAVALVERAI 119 (124)
T ss_dssp CCCBCCSTTSTTTTSSCTTCCCCCBCSSCC--HHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCcceEeeCCCC--HHHHHHHHHHHH
Confidence 7653 222 2334455577788988887 999999987765
No 200
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=54.94 E-value=7.6 Score=34.51 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=17.5
Q ss_pred cHhhHHHhcCceEEEEEecC
Q 017085 2 ELAFLLRGVGTKVNWITIQK 21 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~ 21 (377)
.|+++|+++||+|++++...
T Consensus 19 ~la~~L~~~Gh~V~~~~~~~ 38 (416)
T 1rrv_A 19 ALADRLKALGVQTRMCAPPA 38 (416)
T ss_dssp HHHHHHHHTTCEEEEEECGG
T ss_pred HHHHHHHHCCCeEEEEeCHH
Confidence 58999999999999999653
No 201
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=54.61 E-value=64 Score=27.24 Aligned_cols=68 Identities=9% Similarity=-0.031 Sum_probs=40.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
++++++-+-+..+ +..++.+++++.+ +. ++..++-..+|+++..+. ...-.-.+.+|+..|++|+
T Consensus 29 ~~~~lvav~d~~~------~~~~~~~~~~g~~----~~---~~~~~l~~~~D~V~i~tp--~~~h~~~~~~al~~G~~v~ 93 (319)
T 1tlt_A 29 SDWTLQGAWSPTR------AKALPICESWRIP----YA---DSLSSLAASCDAVFVHSS--TASHFDVVSTLLNAGVHVC 93 (319)
T ss_dssp SSEEEEEEECSSC------TTHHHHHHHHTCC----BC---SSHHHHHTTCSEEEECSC--TTHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEECCCH------HHHHHHHHHcCCC----cc---CcHHHhhcCCCEEEEeCC--chhHHHHHHHHHHcCCeEE
Confidence 6788774444321 2233445555543 22 344444467899888775 3444455668999999999
Q ss_pred EeC
Q 017085 294 GTA 296 (377)
Q Consensus 294 ~s~ 296 (377)
+-.
T Consensus 94 ~eK 96 (319)
T 1tlt_A 94 VDK 96 (319)
T ss_dssp EES
T ss_pred EeC
Confidence 864
No 202
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=53.89 E-value=68 Score=24.13 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=25.8
Q ss_pred HHHHHhcCEEEec---CCCCCCccchHHHH---HHHcCCcEEEeC
Q 017085 258 APYLAAIDVLVQN---SQAWGECFGRITIE---AMAFQLPVLGTA 296 (377)
Q Consensus 258 ~~~~~~adv~l~p---s~~~~e~~~~~~~E---a~a~g~PvI~s~ 296 (377)
.+.+..||++|.- .+. .+.-+.+..| |.+.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g-~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRG-HEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSS-SSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCC-CCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 4788999998754 221 2333456666 679999999853
No 203
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=53.63 E-value=16 Score=30.49 Aligned_cols=77 Identities=13% Similarity=0.042 Sum_probs=46.5
Q ss_pred cccccc-hhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcc--cHHHHHHHHHHHh-cCCCCcEE-EecCcCCHHH
Q 017085 185 SVSRGK-GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ--TKFESELRNYVMQ-KKIQDRVH-FVNKTLTVAP 259 (377)
Q Consensus 185 ~~~~~K-g~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~--~~~~~~l~~~~~~-~~~~~~v~-~~g~~~~~~~ 259 (377)
-++|.| ..+.+.+.++.+.+ .....+++| ...-. .+....+.+.+++ ..++ .|. |.+...+...
T Consensus 44 liDPdK~~~~~~~~~~~~~~~---------sGtDai~VG-S~~vt~~~~~~~~~v~~ik~~~~lP-vil~fPP~~g~~~~ 112 (286)
T 3vk5_A 44 IIDPFKVPVTEAVEKAAELTR---------LGFAAVLLA-STDYESFESHMEPYVAAVKAATPLP-VVLHFPPRPGAGFP 112 (286)
T ss_dssp EECTTTSCHHHHHHHHHHHHH---------TTCSCEEEE-CSCCSSHHHHHHHHHHHHHHHCSSC-EEEECCCBTTTBSC
T ss_pred EECCCCCCcHHHHHHHHHHHh---------cCCCEEEEc-cCCCCcchHHHHHHHHHHHHhCCCC-EEEECCCCCCCccc
Confidence 458877 44555556665544 556778999 43222 2345566666666 7776 344 6622223334
Q ss_pred HHHhcCEEEecCC
Q 017085 260 YLAAIDVLVQNSQ 272 (377)
Q Consensus 260 ~~~~adv~l~ps~ 272 (377)
+...+|.+++||.
T Consensus 113 i~~~aDa~l~psv 125 (286)
T 3vk5_A 113 VVRGADALLLPAL 125 (286)
T ss_dssp CCTTCSEEEEEEE
T ss_pred cccCCCEEEEEEE
Confidence 4579999999987
No 204
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=52.06 E-value=18 Score=28.70 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=51.0
Q ss_pred CeEEEEEec--CCCcccHHHHHHHHHHHhcCCCCcEEEec----CcCCHHHHHHhcCEEEecCCCCCCcc----------
Q 017085 215 SVHAVIIGS--DMNAQTKFESELRNYVMQKKIQDRVHFVN----KTLTVAPYLAAIDVLVQNSQAWGECF---------- 278 (377)
Q Consensus 215 ~~~l~i~G~--~~~~~~~~~~~l~~~~~~~~~~~~v~~~g----~~~~~~~~~~~adv~l~ps~~~~e~~---------- 278 (377)
.-++.++.- +.++...+...+.+..+++|.+ +..+. ..++..+.+..||.+++|.- +.+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~--v~~~~i~~~~~~~~~~~l~~ad~I~l~GG---~~~~l~~~L~~~g 101 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLL--VEELDIATESLGEITTKLRKNDFIYVTGG---NTFFLLQELKRTG 101 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCE--EEECCTTTSCHHHHHHHHHHSSEEEECCS---CHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCe--EEEEEecCCChHHHHHHHHhCCEEEECCC---CHHHHHHHHHHCC
Confidence 346666643 3223234677888888888873 66663 33566688899999998862 221
Q ss_pred -chHHHHHHHcCCcEEEeCC
Q 017085 279 -GRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 279 -~~~~~Ea~a~g~PvI~s~~ 297 (377)
--.+-|+...|+|++++..
T Consensus 102 l~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 102 ADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp HHHHHHHHHHTTCEEEEETH
T ss_pred hHHHHHHHHHcCCeEEEECH
Confidence 1245588888999998743
No 205
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=51.61 E-value=50 Score=27.97 Aligned_cols=69 Identities=7% Similarity=0.162 Sum_probs=42.2
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
++++++ +-+. ..+..++.+++++.+. .+....+.+ -..+|+++..+. .....-.+.+++..|++|+
T Consensus 26 ~~~~l~-v~d~------~~~~~~~~a~~~g~~~--~~~~~~~~l---~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~V~ 91 (323)
T 1xea_A 26 PDIELV-LCTR------NPKVLGTLATRYRVSA--TCTDYRDVL---QYGVDAVMIHAA--TDVHSTLAAFFLHLGIPTF 91 (323)
T ss_dssp TTEEEE-EECS------CHHHHHHHHHHTTCCC--CCSSTTGGG---GGCCSEEEECSC--GGGHHHHHHHHHHTTCCEE
T ss_pred CCceEE-EEeC------CHHHHHHHHHHcCCCc--cccCHHHHh---hcCCCEEEEECC--chhHHHHHHHHHHCCCeEE
Confidence 678888 5443 2355566677776531 122222222 257899988775 4444455668999999998
Q ss_pred EeC
Q 017085 294 GTA 296 (377)
Q Consensus 294 ~s~ 296 (377)
+-.
T Consensus 92 ~EK 94 (323)
T 1xea_A 92 VDK 94 (323)
T ss_dssp EES
T ss_pred EeC
Confidence 754
No 206
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=51.03 E-value=39 Score=29.54 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 233 SELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 233 ~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
+..++.+++++.+. + ..++.+++.. .|+++..+. ...-.-.+.+|+..|++|++-.
T Consensus 57 ~~a~~~a~~~~~~~---~---~~~~~~ll~~~~iD~V~i~tp--~~~h~~~~~~al~~Gk~V~~EK 114 (383)
T 3oqb_A 57 EKVEALAKRFNIAR---W---TTDLDAALADKNDTMFFDAAT--TQARPGLLTQAINAGKHVYCEK 114 (383)
T ss_dssp HHHHHHHHHTTCCC---E---ESCHHHHHHCSSCCEEEECSC--SSSSHHHHHHHHTTTCEEEECS
T ss_pred HHHHHHHHHhCCCc---c---cCCHHHHhcCCCCCEEEECCC--chHHHHHHHHHHHCCCeEEEcC
Confidence 45566777777641 1 1577788876 788887665 4444556789999999999754
No 207
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=50.41 E-value=88 Score=26.46 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=44.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+.. .+..++.+++++.+. ...++.+++. .+|+++..+. .....-.+.+++..|++
T Consensus 23 ~~~~~vav~d~~------~~~~~~~~~~~g~~~------~~~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~ 88 (332)
T 2glx_A 23 TGGEVVSMMSTS------AERGAAYATENGIGK------SVTSVEELVGDPDVDAVYVSTT--NELHREQTLAAIRAGKH 88 (332)
T ss_dssp TTCEEEEEECSC------HHHHHHHHHHTTCSC------CBSCHHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCCeEEEEECCC------HHHHHHHHHHcCCCc------ccCCHHHHhcCCCCCEEEEeCC--hhHhHHHHHHHHHCCCe
Confidence 456766444431 344556666666431 1256777886 4899988775 44444566789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 89 v~~ek 93 (332)
T 2glx_A 89 VLCEK 93 (332)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99854
No 208
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=49.14 E-value=1.2e+02 Score=26.41 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=61.4
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---cCCcE
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQLPV 292 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~g~Pv 292 (377)
++|+.+.. .....+....+..|. .|.......+..+.+.. .|++++-..- .+.-|+.+++.+. ..+||
T Consensus 3 ILIVDDd~----~~~~~l~~~L~~~g~--~v~~a~~~~eal~~l~~~~~DlvllD~~m-p~~dG~ell~~lr~~~~~~pv 75 (387)
T 1ny5_A 3 VLVIEDDK----VFRGLLEEYLSMKGI--KVESAERGKEAYKLLSEKHFNVVLLDLLL-PDVNGLEILKWIKERSPETEV 75 (387)
T ss_dssp EEEECCCH----HHHHHHHHHHHHHTC--EEEEESSHHHHHHHHHHSCCSEEEEESBC-SSSBHHHHHHHHHHHCTTSEE
T ss_pred EEEEECCH----HHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHhhCCCCcE
Confidence 44555542 345555565555554 34443333344444433 5776643220 2334566666553 35677
Q ss_pred EEe-CCCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhhCHH
Q 017085 293 LGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHVE 335 (377)
Q Consensus 293 I~s-~~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~~ 335 (377)
|.- ..+.. .+.+..|..+++..|-+ .+++...|.+++....
T Consensus 76 IvlT~~~~~~~~~~a~~~Ga~dyl~KP~~--~~~L~~~i~~~l~~~~ 120 (387)
T 1ny5_A 76 IVITGHGTIKTAVEAMKMGAYDFLTKPCM--LEEIELTINKAIEHRK 120 (387)
T ss_dssp EEEEETTCHHHHHHHHTTTCCEEEEESCC--HHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhcCceEEecCCCC--HHHHHHHHHHHHHHHH
Confidence 654 33332 23345577889999988 9999999999886443
No 209
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=48.86 E-value=1.1e+02 Score=25.11 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=60.1
Q ss_pred EEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcc---------cHHHHHHHHHHHhcCCCCcEEEe
Q 017085 181 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---------TKFESELRNYVMQKKIQDRVHFV 251 (377)
Q Consensus 181 ~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~---------~~~~~~l~~~~~~~~~~~~v~~~ 251 (377)
+.+|- +.....+..++.+..+.+ -+..++-.+.-.+.. .+....+.+.+++.|++--..+.
T Consensus 26 vIAgp-c~~~~~e~a~~~a~~l~~---------~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~ 95 (262)
T 1zco_A 26 IIAGP-CSIESREQIMKVAEFLAE---------VGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVM 95 (262)
T ss_dssp EEEEC-SBCCCHHHHHHHHHHHHH---------TTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECC
T ss_pred EEEeC-CCCCCHHHHHHHHHHHHH---------cCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeC
Confidence 33454 566677777777775544 234444443321111 23466778888888876322333
Q ss_pred cCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHH-HcCCcEEEeCC
Q 017085 252 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM-AFQLPVLGTAA 297 (377)
Q Consensus 252 g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~-a~g~PvI~s~~ 297 (377)
.. ..+..+-..+|++-.+|. +.-...+++++ ..|+||+.++-
T Consensus 96 d~-~~~~~l~~~vd~~kIga~---~~~n~~ll~~~a~~~kPV~lk~G 138 (262)
T 1zco_A 96 DT-RHVELVAKYSDILQIGAR---NSQNFELLKEVGKVENPVLLKRG 138 (262)
T ss_dssp CG-GGHHHHHHHCSEEEECGG---GTTCHHHHHHHTTSSSCEEEECC
T ss_pred CH-HhHHHHHhhCCEEEECcc---cccCHHHHHHHHhcCCcEEEecC
Confidence 32 234334344899999996 44455555555 48999999864
No 210
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=48.12 E-value=30 Score=28.95 Aligned_cols=88 Identities=17% Similarity=0.066 Sum_probs=46.2
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHHHHHc-CCcEEEeCCCCccccee-c---------C-------cceeeecCCCCC
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEIVV-N---------G-------TTGLLHPVGKEG 319 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~-g~PvI~s~~~~~~e~~~-~---------~-------~~g~~~~~~~~~ 319 (377)
..-++.||+++..... .|++--.+++++.. ++.+|.. ..++. +.. . + +-=+..++.+
T Consensus 55 ~~~l~~Adlvv~~G~~-lE~w~~k~~~~~~~~~~~~v~~-~~~i~-l~~~~~~~~~~~~~~~~h~~~~dPHvWldp~~-- 129 (286)
T 3gi1_A 55 VAAIYDADLFVYHSHT-LEAWARDLDPNLKKSKVDVFEA-SKPLT-LDRVKGLEDMEVTQGIDPATLYDPHTWTDPVL-- 129 (286)
T ss_dssp HHHHHTSSEEEESCTT-TSGGGTTCCTTTTTCCCEEEET-TTTSC-CCBCC---------------CBCCCGGGSHHH--
T ss_pred HHHHHhCCEEEEcCCC-chHHHHHHHHhccCCCcEEEEC-CCCcc-ccccCCcccccccccccCCCCCCCceecCHHH--
Confidence 3567888888877653 56665556655533 2334432 22222 100 0 0 0001223333
Q ss_pred hhHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 017085 320 ITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 350 (377)
Q Consensus 320 ~~~la~~i~~l~~--~~~~~~~~~~~~~~~~~~ 350 (377)
...+++.|...|. ||+......+|+.++..+
T Consensus 130 ~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 162 (286)
T 3gi1_A 130 AGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKE 162 (286)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 5667777776655 787777777777665543
No 211
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=47.80 E-value=1.1e+02 Score=24.77 Aligned_cols=110 Identities=11% Similarity=0.151 Sum_probs=67.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh---cCEEEecCCCCCCccchHHHHHHHc--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMAF-- 288 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~---adv~l~ps~~~~e~~~~~~~Ea~a~-- 288 (377)
...+++|+-+.. .....+....+..+. .+.....-.+..+.+.. .|++++=..- .+.-|+.+++.+..
T Consensus 123 ~~~~ILivDD~~----~~~~~l~~~L~~~~~--~v~~a~~~~eal~~l~~~~~~dlvllD~~m-P~~dG~~l~~~lr~~~ 195 (259)
T 3luf_A 123 QQIEVLVVDDSR----TSRHRTMAQLRKQLL--QVHEASHAREALATLEQHPAIRLVLVDYYM-PEIDGISLVRMLRERY 195 (259)
T ss_dssp TTCEEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHCTTEEEEEECSCC-SSSCHHHHHHHHHHHC
T ss_pred CCCcEEEEeCCH----HHHHHHHHHHHHcCc--EEEEeCCHHHHHHHHhcCCCCCEEEEcCCC-CCCCHHHHHHHHHhcc
Confidence 567888888763 345556666665543 35544444455555543 4677653320 33356677766642
Q ss_pred ---CCcEEE-eCCCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 289 ---QLPVLG-TAAGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 289 ---g~PvI~-s~~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
.+|+|+ |.... ..+.+..|..+++..|-+ .++|...+.++++
T Consensus 196 ~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~--~~~L~~~i~~~l~ 244 (259)
T 3luf_A 196 SKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFE--PEELQCRVSHNLE 244 (259)
T ss_dssp CTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCC--HHHHHHHHHHHHH
Confidence 477774 33222 223355688999999988 9999999988764
No 212
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=47.74 E-value=16 Score=32.11 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=44.2
Q ss_pred cHhhHHHhcCceEEEEEecCCC----cchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPS----EEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTA 66 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~ 66 (377)
++|..|++.|.+|+++...... ........+...+...|+++........+-.....|.|++...
T Consensus 160 E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~ig~~~~~D~vv~a~G 228 (385)
T 3klj_A 160 ELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEMGDLIRSSCVITAVG 228 (385)
T ss_dssp HHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGCHHHHHHSEEEECCC
T ss_pred HHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEcCeEEecCeEEECcC
Confidence 6889999999999999754332 1223334456667778999877655544444556898887754
No 213
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=47.48 E-value=1.2e+02 Score=26.67 Aligned_cols=71 Identities=11% Similarity=-0.047 Sum_probs=46.8
Q ss_pred CCeEEEE-EecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh-------cCEEEecCCCCCCccchHHHHH
Q 017085 214 PSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA-------IDVLVQNSQAWGECFGRITIEA 285 (377)
Q Consensus 214 ~~~~l~i-~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~-------adv~l~ps~~~~e~~~~~~~Ea 285 (377)
++++++- +-+. ..+..++.++++|++.. ....++.+++.. .|+++..+- ...-.-.+.+|
T Consensus 38 ~~~~lva~v~d~------~~~~a~~~a~~~g~~~~----~~~~~~~~ll~~~~~~~~~vD~V~i~tp--~~~H~~~~~~a 105 (398)
T 3dty_A 38 NTFVLVAGAFDI------DPIRGSAFGEQLGVDSE----RCYADYLSMFEQEARRADGIQAVSIATP--NGTHYSITKAA 105 (398)
T ss_dssp GSEEEEEEECCS------SHHHHHHHHHHTTCCGG----GBCSSHHHHHHHHTTCTTCCSEEEEESC--GGGHHHHHHHH
T ss_pred CCeEEEEEEeCC------CHHHHHHHHHHhCCCcc----eeeCCHHHHHhcccccCCCCCEEEECCC--cHHHHHHHHHH
Confidence 5677663 3332 24566777788876421 112578888876 899887765 34444567799
Q ss_pred HHcCCcEEEeC
Q 017085 286 MAFQLPVLGTA 296 (377)
Q Consensus 286 ~a~g~PvI~s~ 296 (377)
+..|++|++-.
T Consensus 106 l~aGkhVl~EK 116 (398)
T 3dty_A 106 LEAGLHVVCEK 116 (398)
T ss_dssp HHTTCEEEECS
T ss_pred HHCCCeEEEeC
Confidence 99999999853
No 214
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=47.17 E-value=1.4e+02 Score=25.84 Aligned_cols=90 Identities=10% Similarity=0.064 Sum_probs=52.4
Q ss_pred HHHHHHhCC---CCCCeEEEEecccccc--chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecC-CCc-ccHHHHHHHH
Q 017085 165 EHVRESLGV---RNEDLLFAIINSVSRG--KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSD-MNA-QTKFESELRN 237 (377)
Q Consensus 165 ~~~r~~~~~---~~~~~~i~~~G~~~~~--Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~-~~~-~~~~~~~l~~ 237 (377)
-.+++.+|- ..-++++.++|-+... .=...++.++.. -++++.++++. .-. .+...+.+++
T Consensus 177 ~TI~E~~g~~~l~glkvvva~vGDl~~~~nrva~Sl~~~~~~------------~G~~v~~~~P~~~~~~~~~~~~~~~~ 244 (359)
T 1zq6_A 177 LALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATR------------MGMDVTLLCPTPDYILDERYMDWAAQ 244 (359)
T ss_dssp HHHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHH------------TTCEEEEECSSGGGCCCHHHHHHHHH
T ss_pred HHHHHHhCCCcccCCeeEEEEEecccccccchHHHHHHHHHH------------cCCEEEEEcCccccCCCHHHHHHHHH
Confidence 457777773 3222338899965432 223344444432 36899999875 211 1124455556
Q ss_pred HHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 238 YVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 238 ~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
.+++.|. .+.+. .++.+.+..+|++....
T Consensus 245 ~a~~~g~--~v~~~---~d~~eav~~aDvVyt~~ 273 (359)
T 1zq6_A 245 NVAESGG--SLQVS---HDIDSAYAGADVVYAKS 273 (359)
T ss_dssp HHHHHSC--EEEEE---CCHHHHHTTCSEEEEEC
T ss_pred HHHHcCC--eEEEE---CCHHHHhcCCCEEEECC
Confidence 6666653 34443 46788999999877654
No 215
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=46.63 E-value=1.6e+02 Score=26.21 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=63.4
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc-----C
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF-----Q 289 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~-----g 289 (377)
+++|+.+.. .....+....+..|. .|.....-.+..+++. ..|++++=..- .+.-|..+++.+.. .
T Consensus 3 ~iLivdD~~----~~~~~l~~~L~~~~~--~v~~a~~~~~al~~~~~~~~dlvllD~~m-p~~~G~~~~~~l~~~~~~~~ 75 (459)
T 1w25_A 3 RILVVDDIE----ANVRLLEAKLTAEYY--EVSTAMDGPTALAMAARDLPDIILLDVMM-PGMDGFTVCRKLKDDPTTRH 75 (459)
T ss_dssp EEEEECSST----THHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHHHHHHHHHHSTTTTT
T ss_pred eEEEEeCCH----HHHHHHHHHHHHcCC--EEEEECCHHHHHHHHhcCCCCEEEEcCCC-CCCCHHHHHHHHhcCcccCC
Confidence 455666543 345666666665543 3444443334444443 25777753320 23346667776653 5
Q ss_pred CcEEEe-CCCCc---ccceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 290 LPVLGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 290 ~PvI~s-~~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
+|||.- ..... .+.+..|..+++..|-+ .++|..+|..++...
T Consensus 76 ~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~--~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 76 IPVVLITALDGRGDRIQGLESGASDFLTKPID--DVMLFARVRSLTRFK 122 (459)
T ss_dssp SCEEEEECSSCHHHHHHHHHHTCCEEEESSCC--HHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHHHH
Confidence 787754 33322 23344577899999988 999999998887543
No 216
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=46.43 E-value=1.1e+02 Score=26.14 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=45.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+. ..+..++.+++++. .. ..++.+++. .+|+++..+. ...-.-.+.+|+..|++
T Consensus 37 ~~~~lvav~d~------~~~~~~~~~~~~~~----~~---~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~~gk~ 101 (354)
T 3q2i_A 37 DRAELIDVCDI------DPAALKAAVERTGA----RG---HASLTDMLAQTDADIVILTTP--SGLHPTQSIECSEAGFH 101 (354)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHHCC----EE---ESCHHHHHHHCCCSEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEEcC------CHHHHHHHHHHcCC----ce---eCCHHHHhcCCCCCEEEECCC--cHHHHHHHHHHHHCCCC
Confidence 57887755443 23555666666653 22 256778887 6898888775 33334457789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 102 v~~EK 106 (354)
T 3q2i_A 102 VMTEK 106 (354)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99864
No 217
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=46.16 E-value=60 Score=28.17 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=45.7
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCcE
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPV 292 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~Pv 292 (377)
+.+++-+.+. ..+..++.+++++.+ ... .++.++++. .|+++..+. ...-.-.+.+|+..|++|
T Consensus 37 ~~~l~av~d~------~~~~a~~~a~~~g~~---~~~---~d~~~ll~~~~iDaV~I~tP--~~~H~~~~~~al~aGkhV 102 (390)
T 4h3v_A 37 HPDLNVLCGR------DAEAVRAAAGKLGWS---TTE---TDWRTLLERDDVQLVDVCTP--GDSHAEIAIAALEAGKHV 102 (390)
T ss_dssp EEEEEEEECS------SHHHHHHHHHHHTCS---EEE---SCHHHHTTCTTCSEEEECSC--GGGHHHHHHHHHHTTCEE
T ss_pred CceEEEEEcC------CHHHHHHHHHHcCCC---ccc---CCHHHHhcCCCCCEEEEeCC--hHHHHHHHHHHHHcCCCc
Confidence 3466655553 346677788888764 111 467777754 688887775 444445678999999999
Q ss_pred EEeC
Q 017085 293 LGTA 296 (377)
Q Consensus 293 I~s~ 296 (377)
++-.
T Consensus 103 l~EK 106 (390)
T 4h3v_A 103 LCEK 106 (390)
T ss_dssp EEES
T ss_pred eeec
Confidence 9875
No 218
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=45.94 E-value=81 Score=26.22 Aligned_cols=86 Identities=8% Similarity=-0.031 Sum_probs=47.8
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCCccccee---cCcc----eeeecCCCCChhHHHHHHHHH
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGGTTEIVV---NGTT----GLLHPVGKEGITPLAKNIVKL 330 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~~~e~~~---~~~~----g~~~~~~~~~~~~la~~i~~l 330 (377)
..-++.||+++..... .|++-..++++. + +-++..-...++.. ++.. =+..++.+ ...+++.|...
T Consensus 50 ~~~l~~Adlvv~nG~~-lE~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~dPHvWldp~~--~~~~a~~I~~~ 122 (282)
T 3mfq_A 50 LSKLQKADLVLYHGLH-FEGKMVEALEKT--G--VAVSKNFNAKDLNTMDEDGEEIVDPHFWFSIPL--YKSAVAVASEE 122 (282)
T ss_dssp HHHHHHCSEEEECCTT-SSSSCHHHHHHH--C--EETTTTCCGGGCCEECSSSSCEECCCGGGSHHH--HHHHHHHHHHH
T ss_pred HHHHHcCCEEEEcCcc-hHHHHHHHHHhc--C--cchhhccCcccccccccCCCCCCCCCccCCHHH--HHHHHHHHHHH
Confidence 3566788998887653 777777777764 2 11121100001110 0100 02233444 67788888877
Q ss_pred hh--CHHHHHHHHHHHHHHHHH
Q 017085 331 AT--HVERRLTMGKRGYERVKE 350 (377)
Q Consensus 331 ~~--~~~~~~~~~~~~~~~~~~ 350 (377)
|. ||+......+|+.++..+
T Consensus 123 L~~~dP~~a~~y~~N~~~~~~~ 144 (282)
T 3mfq_A 123 LQKLLPAKAEMIQKNTEKYQAQ 144 (282)
T ss_dssp HTTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHhChhhHHHHHHHHHHHHHH
Confidence 76 888777777777665543
No 219
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=45.90 E-value=23 Score=28.94 Aligned_cols=18 Identities=17% Similarity=-0.088 Sum_probs=14.0
Q ss_pred HhhHHHhcCceEEEEEec
Q 017085 3 LAFLLRGVGTKVNWITIQ 20 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~ 20 (377)
+|+.|...|++|+++...
T Consensus 77 ~AR~L~~~G~~V~v~~~~ 94 (246)
T 1jzt_A 77 CARHLKLFGYNPVVFYPK 94 (246)
T ss_dssp HHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHCCCeEEEEEcC
Confidence 578888888888887644
No 220
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=45.27 E-value=19 Score=25.28 Aligned_cols=56 Identities=9% Similarity=0.218 Sum_probs=34.9
Q ss_pred eEEE-EEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 216 VHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 216 ~~l~-i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
.+++ ++|.|.....-...++++.+++.|++..|...+. .++...+..+|+++....
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~-~~~~~~~~~~DlIist~~ 78 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRV-NEIETYMDGVHLICTTAR 78 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECT-TTTTTSTTSCSEEEESSC
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecH-HHHhhccCCCCEEEECCc
Confidence 4444 4566654332247888999999888644444443 445445678999887654
No 221
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=45.26 E-value=1.6e+02 Score=25.85 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=47.8
Q ss_pred cCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-----------------------------CCHHHHHH
Q 017085 212 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-----------------------------LTVAPYLA 262 (377)
Q Consensus 212 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-----------------------------~~~~~~~~ 262 (377)
+..+.+++++|.| ..-..+-+++...|. .+|.+.... .++.+.+.
T Consensus 189 ~l~~~kVVv~GAG-----aAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~ 262 (388)
T 1vl6_A 189 KIEEVKVVVNGIG-----AAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALE 262 (388)
T ss_dssp CTTTCEEEEECCS-----HHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHT
T ss_pred CCCCcEEEEECCC-----HHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHc
Confidence 3478899999998 455556666666675 356655421 24888999
Q ss_pred hcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 263 AIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 263 ~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
.+|+++-.|. ..-+.--+++.|+ ..|+|
T Consensus 263 ~ADVlIG~Sa--p~l~t~emVk~Ma-~~pII 290 (388)
T 1vl6_A 263 GADFFIGVSR--GNILKPEWIKKMS-RKPVI 290 (388)
T ss_dssp TCSEEEECSC--SSCSCHHHHTTSC-SSCEE
T ss_pred cCCEEEEeCC--CCccCHHHHHhcC-CCCEE
Confidence 9999998775 4444455666665 34555
No 222
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=45.02 E-value=44 Score=24.93 Aligned_cols=70 Identities=13% Similarity=0.048 Sum_probs=38.1
Q ss_pred HHHHHhcCEEEecCCCCCCccchHHHH---HHHcCCcEEEeCCC----CcccceecCc--ceeeecCCCCChhHHHHHHH
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRITIE---AMAFQLPVLGTAAG----GTTEIVVNGT--TGLLHPVGKEGITPLAKNIV 328 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~~~E---a~a~g~PvI~s~~~----~~~e~~~~~~--~g~~~~~~~~~~~~la~~i~ 328 (377)
.+.+..||+++.--. +.-+.+.+| |.+.|+||++--.+ .+.-.+.... .-+.+.... .+++.+.|.
T Consensus 63 ~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~--~~el~~il~ 137 (152)
T 4fyk_A 63 LNWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYA--EGEVETMLD 137 (152)
T ss_dssp HHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECC--TTCHHHHHH
T ss_pred HHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEec--HHHHHHHHH
Confidence 367899999887432 333344454 78999999983221 1221221111 113333333 267777777
Q ss_pred HHhh
Q 017085 329 KLAT 332 (377)
Q Consensus 329 ~l~~ 332 (377)
+.++
T Consensus 138 ~f~~ 141 (152)
T 4fyk_A 138 RYFE 141 (152)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7664
No 223
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=44.86 E-value=45 Score=26.25 Aligned_cols=110 Identities=9% Similarity=-0.005 Sum_probs=63.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhc-CCCCcEEEe-cCc-CCHHHHH--HhcCEEEecCCCCCCccchHHHHHHH-
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFV-NKT-LTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMA- 287 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~-g~~-~~~~~~~--~~adv~l~ps~~~~e~~~~~~~Ea~a- 287 (377)
...+++|+.+.. .....+....+.. +. .+... ... +.+..++ ...|++++=..- .+.-|..+++.+.
T Consensus 6 ~~~~IlivdD~~----~~~~~l~~~L~~~~~~--~v~~~~~~~~~~~~~~~~~~~~dlvllD~~m-p~~~G~~~~~~lr~ 78 (225)
T 3klo_A 6 NKLNVRMLSDVC----MQSRLLKEALESKLPL--ALEITPFSELWLEENKPESRSIQMLVIDYSR-ISDDVLTDYSSFKH 78 (225)
T ss_dssp SSEEEEEESCCS----HHHHHHHHHHHHHSSE--EEEEECGGGHHHHTTCSGGGGCCEEEEEGGG-CCHHHHHHHHHHHH
T ss_pred CceEEEEEcCcH----HHHHHHHHHHhhCCCc--eEEEEeCCcHHHHHHHhhccCCCEEEEeCCC-CCCCHHHHHHHHHH
Confidence 457888888764 4566777777643 32 22221 111 1122222 246887753220 3334566666553
Q ss_pred ---cCCcEEEeC-CCC---cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 288 ---FQLPVLGTA-AGG---TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 288 ---~g~PvI~s~-~~~---~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
..+|||.-. ... .......|..|++..+.+ .+++..+|..++.
T Consensus 79 ~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 128 (225)
T 3klo_A 79 ISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDD--MDTLIKGMSKILQ 128 (225)
T ss_dssp HHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCC--HHHHHHHHHHHHT
T ss_pred hhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCC--HHHHHHHHHHHHC
Confidence 367877542 222 233344577899999988 9999999999876
No 224
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=44.77 E-value=1.6e+02 Score=25.86 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=59.8
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc------------
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT------------ 254 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~------------ 254 (377)
+...|.-.+.-|. +...++-.|.+..+.++++.|.| ..--.+-+++..+|. .+|.+....
T Consensus 162 DDiqGTa~V~lAa--ll~al~l~g~~l~d~kVVi~GAG-----aAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~ 233 (398)
T 2a9f_A 162 DDQHGTAIVVLAA--IFNSLKLLKKSLDEVSIVVNGGG-----SAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLA 233 (398)
T ss_dssp HHHHHHHHHHHHH--HHHHHHTTTCCTTSCEEEEECCS-----HHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCC
T ss_pred chhhhHHHHHHHH--HHHHHHHhCCCCCccEEEEECCC-----HHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccch
Confidence 4556654433322 22233333335578999999999 455566666677776 356554321
Q ss_pred ----------------CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 255 ----------------LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 255 ----------------~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
..+.+.+..+|+++-.|. ..-+.--+++.|+ ..|||..
T Consensus 234 ~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sa--pgl~T~EmVk~Ma-~~pIIfa 287 (398)
T 2a9f_A 234 PHHLDIAKVTNREFKSGTLEDALEGADIFIGVSA--PGVLKAEWISKMA-ARPVIFA 287 (398)
T ss_dssp C---CHHHHHSCTTCCCSCSHHHHTTCSEEECCS--TTCCCHHHHHTSC-SSCEEEE
T ss_pred HHHHHHhhccCcccchhhHHHHhccCCEEEecCC--CCCCCHHHHHhhC-CCCEEEE
Confidence 237788889999997776 5556666777777 4565543
No 225
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=44.54 E-value=9.3 Score=29.46 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=38.3
Q ss_pred HHHHhcCEEEe-cCCCCCCccc--hHHHHHHHcCCcEEEeCCCCc-ccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 259 PYLAAIDVLVQ-NSQAWGECFG--RITIEAMAFQLPVLGTAAGGT-TEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 259 ~~~~~adv~l~-ps~~~~e~~~--~~~~Ea~a~g~PvI~s~~~~~-~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
-+...||.+|. |. ++| ..+.|++..++||+.-+.-+. ..++.......+.-.++ ++++.+.|.+.+.
T Consensus 103 ~m~~~sda~IvlpG-----g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~--~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 103 INALSSNVLVAVGM-----GPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAAD--VAGAIAAVKQLLA 173 (176)
T ss_dssp CCGGGCSEEEEESC-----CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESS--HHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEecC-----CccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCC--HHHHHHHHHHHHH
Confidence 34456887664 43 244 346688899999999875221 11222221222333334 8888888877654
No 226
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=44.26 E-value=48 Score=28.20 Aligned_cols=42 Identities=14% Similarity=-0.084 Sum_probs=28.0
Q ss_pred CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC
Q 017085 256 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~ 299 (377)
++.+++..+|+++..+. ....--.+..++..|++||++...+
T Consensus 51 d~~~ll~~~DvViiatp--~~~h~~~~~~al~aG~~Vv~ekp~~ 92 (320)
T 1f06_A 51 DVDKHADDVDVLFLCMG--SATDIPEQAPKFAQFACTVDTYDNH 92 (320)
T ss_dssp GGGGTTTTCSEEEECSC--TTTHHHHHHHHHTTTSEEECCCCCG
T ss_pred CHHHHhcCCCEEEEcCC--cHHHHHHHHHHHHCCCEEEECCCCc
Confidence 34444478999998775 3322234568888999999886443
No 227
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=44.26 E-value=1.2e+02 Score=24.19 Aligned_cols=125 Identities=8% Similarity=0.039 Sum_probs=58.8
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEE
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 294 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~ 294 (377)
+..++++... ...++.+++.+. .+.+.... --.+.+..+|+++..+- .......+.++...|+||-+
T Consensus 54 GA~VtVvap~------~~~~l~~l~~~~----~i~~i~~~-~~~~dL~~adLVIaAT~--d~~~N~~I~~~ak~gi~VNv 120 (223)
T 3dfz_A 54 GAAITVVAPT------VSAEINEWEAKG----QLRVKRKK-VGEEDLLNVFFIVVATN--DQAVNKFVKQHIKNDQLVNM 120 (223)
T ss_dssp CCCEEEECSS------CCHHHHHHHHTT----SCEEECSC-CCGGGSSSCSEEEECCC--CTHHHHHHHHHSCTTCEEEC
T ss_pred CCEEEEECCC------CCHHHHHHHHcC----CcEEEECC-CCHhHhCCCCEEEECCC--CHHHHHHHHHHHhCCCEEEE
Confidence 4566677653 224466666543 34444322 11234567998886654 33334445555458999988
Q ss_pred eCCCCccc-----ceecCcceeeecCCCCChhHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHhcC
Q 017085 295 TAAGGTTE-----IVVNGTTGLLHPVGKEGITPLAKNIVKLAT-----HVERRLTMGKRGYERVKEIFQ 353 (377)
Q Consensus 295 s~~~~~~e-----~~~~~~~g~~~~~~~~~~~~la~~i~~l~~-----~~~~~~~~~~~~~~~~~~~f~ 353 (377)
.|.+...+ ++..+.--+-+..+-. .-.+|..|.+-++ +-..+.+.....|+.+.+.+.
T Consensus 121 vD~p~~~~f~~Paiv~rg~l~iaIST~G~-sP~la~~iR~~ie~~lp~~~~~~~~~~~~~R~~vk~~~~ 188 (223)
T 3dfz_A 121 ASSFSDGNIQIPAQFSRGRLSLAISTDGA-SPLLTKRIKEDLSSNYDESYTQYTQFLYECRVLIHRLNV 188 (223)
T ss_dssp -----CCSEECCEEEEETTEEEEEECTTS-CHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHCCS
T ss_pred eCCcccCeEEEeeEEEeCCEEEEEECCCC-CcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHCC
Confidence 87765444 4444433333333221 3455555554443 122233333444555544433
No 228
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=44.23 E-value=1.4e+02 Score=24.78 Aligned_cols=107 Identities=10% Similarity=0.001 Sum_probs=65.7
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEE-EecCcCCHHHHHHh--cCEEEe----c-CCCCCCccc-hHHHH
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLTVAPYLAA--IDVLVQ----N-SQAWGECFG-RITIE 284 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~-~~g~~~~~~~~~~~--adv~l~----p-s~~~~e~~~-~~~~E 284 (377)
...+++++-+.. .....+....+..|. .|. ....-.+..+.+.. .|++++ | .. .|+- ...+-
T Consensus 159 l~~rILvVdD~~----~~~~~l~~~L~~~g~--~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~m---dG~e~~~~ir 229 (286)
T 3n0r_A 159 LATEVLIIEDEP----VIAADIEALVRELGH--DVTDIAATRGEALEAVTRRTPGLVLADIQLADGS---SGIDAVKDIL 229 (286)
T ss_dssp CCCEEEEECCSH----HHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSC---CTTTTTHHHH
T ss_pred CCCcEEEEcCCH----HHHHHHHHHhhccCc--eEEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCC---CHHHHHHHHH
Confidence 445777777753 456777888888775 354 44433444455543 577774 5 22 2322 12233
Q ss_pred HHHcCCcEEEeCC-C-CcccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 285 AMAFQLPVLGTAA-G-GTTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 285 a~a~g~PvI~s~~-~-~~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
... .+|||+-.. + .....+..|.++++..|-+ .++|...|.+++.
T Consensus 230 ~~~-~~piI~lT~~~~~~~~~~~~G~~~~l~KP~~--~~~L~~~i~~~l~ 276 (286)
T 3n0r_A 230 GRM-DVPVIFITAFPERLLTGERPEPTFLITKPFQ--PETVKAAIGQALF 276 (286)
T ss_dssp HHT-TCCEEEEESCGGGGCCSSSCCCSSEEESSCC--HHHHHHHHHHHHH
T ss_pred hcC-CCCEEEEeCCHHHHHHHHhCCCcEEEeCCCC--HHHHHHHHHHHHH
Confidence 333 899986532 2 1223344577889999988 9999999998875
No 229
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=43.87 E-value=69 Score=27.26 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=39.9
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCch--hhhHHHHHhhcCC
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAV--AGKWLDAVLKEDV 80 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~--~~~~~~~~~~~~~ 80 (377)
+|+.|.++|++|++.-....++ ....+...|+.+........+. ..++|+|+..... ....+..+...++
T Consensus 20 ~A~~L~~~G~~V~~~D~~~~~~-------~~~~L~~~gi~v~~g~~~~~l~-~~~~d~vV~Spgi~~~~p~~~~a~~~gi 91 (326)
T 3eag_A 20 LAAIAKEAGFEVSGCDAKMYPP-------MSTQLEALGIDVYEGFDAAQLD-EFKADVYVIGNVAKRGMDVVEAILNLGL 91 (326)
T ss_dssp HHHHHHHTTCEEEEEESSCCTT-------HHHHHHHTTCEEEESCCGGGGG-SCCCSEEEECTTCCTTCHHHHHHHHTTC
T ss_pred HHHHHHhCCCEEEEEcCCCCcH-------HHHHHHhCCCEEECCCCHHHcC-CCCCCEEEECCCcCCCCHHHHHHHHcCC
Confidence 6889999999999875443221 2234555788876533222211 0368999987533 2333444444344
No 230
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=43.48 E-value=2.1e+02 Score=26.71 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=63.1
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-----CcEEEecC--------
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-----DRVHFVNK-------- 253 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-----~~v~~~g~-------- 253 (377)
+...|.-.+ +++-|...++-.|.+..+.++++.|.|.-.- ...+.+...+.+.|++ .+|.+...
T Consensus 294 DDiqGTA~V--~lAgllnAlki~gk~l~d~riv~~GAGaAgi-gia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r 370 (605)
T 1o0s_A 294 DDIQGTASV--IVAGLLTCTRVTKKLVSQEKYLFFGAGAAST-GIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNR 370 (605)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHCCCGGGCCEEEECCSHHHH-HHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTC
T ss_pred cccchHHHH--HHHHHHHHHHHhCCChhhcEEEEECCCHHHH-HHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCC
Confidence 344554332 2223333444444355789999999983211 1233444444446764 45665531
Q ss_pred ----------------cCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc--CCcEEEe
Q 017085 254 ----------------TLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--QLPVLGT 295 (377)
Q Consensus 254 ----------------~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~--g~PvI~s 295 (377)
...+.+.+.. +|+++-.|.. ...|.--++++|+. ..|+|-.
T Consensus 371 ~~l~~~k~~~A~~~~~~~~L~eav~~vkpdVlIG~S~~-~g~ft~evv~~Ma~~~~~PIIFa 431 (605)
T 1o0s_A 371 KEMNPRHVQFAKDMPETTSILEVIRAARPGALIGASTV-RGAFNEEVIRAMAEINERPIIFA 431 (605)
T ss_dssp SSCCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECSSC-TTCSCHHHHHHHHHHCSSCEEEE
T ss_pred CCchHHHHHHHhhcCCCCCHHHHHhhcCCCEEEEecCC-CCCCCHHHHHHHHhcCCCCEEEE
Confidence 1247888886 9999988852 57788889999994 7788754
No 231
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=43.09 E-value=74 Score=21.44 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=56.7
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH--cCCcE
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPV 292 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a--~g~Pv 292 (377)
+++++.+.. .....+....+..|. .+.......+....+. ..|++++-..- .+.-|..+++.+. ..+|+
T Consensus 3 ~ilivdd~~----~~~~~l~~~l~~~~~--~v~~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~i 75 (121)
T 1zh2_A 3 NVLIVEDEQ----AIRRFLRTALEGDGM--RVFEAETLQRGLLEAATRKPDLIILDLGL-PDGDGIEFIRDLRQWSAVPV 75 (121)
T ss_dssp EEEEECSCH----HHHHHHHHHHHTTTC--EEEEESSHHHHHHHHHHHCCSEEEEESEE-TTEEHHHHHHHHHTTCCCCE
T ss_pred EEEEEeCCH----HHHHHHHHHHhcCCC--EEEEeCCHHHHHHHHhcCCCCEEEEeCCC-CCCcHHHHHHHHHhCCCCcE
Confidence 455565542 345556666665543 2333332222222222 35776643220 2224556666664 34676
Q ss_pred EEe-CCCCc---ccceecCcceeeecCCCCChhHHHHHHHHHh
Q 017085 293 LGT-AAGGT---TEIVVNGTTGLLHPVGKEGITPLAKNIVKLA 331 (377)
Q Consensus 293 I~s-~~~~~---~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~ 331 (377)
|.. ..... .+.+..|..+++..|-+ .+++...+..++
T Consensus 76 i~~s~~~~~~~~~~~~~~g~~~~l~Kp~~--~~~l~~~i~~~~ 116 (121)
T 1zh2_A 76 IVLSARSEESDKIAALDAGADDYLSKPFG--IGELQARLRVAL 116 (121)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCC--HHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhcCCCeEEeCCcC--HHHHHHHHHHHH
Confidence 644 33322 23344577889999887 999999887765
No 232
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=42.60 E-value=1.7e+02 Score=25.32 Aligned_cols=105 Identities=12% Similarity=0.027 Sum_probs=60.3
Q ss_pred EEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc---------ccHHHHHHHHHHHhcCCCCcEEE
Q 017085 180 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHF 250 (377)
Q Consensus 180 i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~---------~~~~~~~l~~~~~~~~~~~~v~~ 250 (377)
++.+|- +.....+.+++.+..+++ ....++-.+.-.+. ..+..+.+++.+++.|++--..+
T Consensus 108 ~vIAgp-cs~es~e~a~~~a~~~k~---------aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~~te~ 177 (350)
T 1vr6_A 108 TIIAGP-CSVEGREMLMETAHFLSE---------LGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEA 177 (350)
T ss_dssp EEEEEC-SBCCCHHHHHHHHHHHHH---------TTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEEEC
T ss_pred EEEEeC-CCcCCHHHHHHHHHHHHH---------cCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 333443 336677777777776544 23334433322111 12456778888899988622222
Q ss_pred ecCcCCHHHHHHhcCEEEecCCCCCCccchHHHH-HHHcCCcEEEeCCC
Q 017085 251 VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE-AMAFQLPVLGTAAG 298 (377)
Q Consensus 251 ~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~E-a~a~g~PvI~s~~~ 298 (377)
... ..+..+-..+|++-.+|. +.....+++ +...|+||+.++-.
T Consensus 178 ~d~-~~~~~l~~~vd~lkIgAr---~~~n~~LL~~va~~~kPVilk~G~ 222 (350)
T 1vr6_A 178 LGE-DDLPKVAEYADIIQIGAR---NAQNFRLLSKAGSYNKPVLLKRGF 222 (350)
T ss_dssp SSG-GGHHHHHHHCSEEEECGG---GTTCHHHHHHHHTTCSCEEEECCT
T ss_pred CCH-HHHHHHHHhCCEEEECcc---cccCHHHHHHHHccCCcEEEcCCC
Confidence 222 334344344899999996 444555554 44589999998743
No 233
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=42.21 E-value=61 Score=26.98 Aligned_cols=88 Identities=19% Similarity=0.103 Sum_probs=48.1
Q ss_pred HHHHhcCEEEecCCCCCCccchHHHHHHHc-CCcEEEeCCCCcccc-e---e-------cC-----cceeeecCCCCChh
Q 017085 259 PYLAAIDVLVQNSQAWGECFGRITIEAMAF-QLPVLGTAAGGTTEI-V---V-------NG-----TTGLLHPVGKEGIT 321 (377)
Q Consensus 259 ~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~-g~PvI~s~~~~~~e~-~---~-------~~-----~~g~~~~~~~~~~~ 321 (377)
.-++.||+++..... .|++--.+++++.. ++++|.... ++.-+ . . ++ +-=+..++.+ ..
T Consensus 54 ~~l~~Adlvv~~G~~-lE~w~~~~~~~~~~~~~~~v~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~--~~ 129 (284)
T 3cx3_A 54 AAIYDADVFVYHSHT-LESWAGSLDPNLKKSKVKVLEASE-GMTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEK--AG 129 (284)
T ss_dssp HHHHHSSEEEESCTT-TSCTTTTCCTTTTTCCCEEEETTT-TCCCCBCCC-------------CCBCCCGGGSHHH--HH
T ss_pred HHHHhCCEEEEcCCC-cHhHHHHHHHhcccCCCeEEEccC-CccccccCCcccccccccccCCCCCCCCcccCHHH--HH
Confidence 567889998877653 67776667766543 344543321 21100 0 0 00 0012333333 56
Q ss_pred HHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 017085 322 PLAKNIVKLAT--HVERRLTMGKRGYERVKE 350 (377)
Q Consensus 322 ~la~~i~~l~~--~~~~~~~~~~~~~~~~~~ 350 (377)
.+++.|...|. ||+......+|+.++..+
T Consensus 130 ~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 160 (284)
T 3cx3_A 130 EEAQIIADKLSEVDSEHKETYQKNAQAFIKK 160 (284)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 77777776665 787777777777665543
No 234
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=42.07 E-value=70 Score=22.97 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=35.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccc--hhHHH--hhhcccEEEEcCch
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--QETIN--TALKADLIVLNTAV 67 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~Div~~~~~~ 67 (377)
.+++.|.+.|++|+++..+.. ....+...|+.++.... ...+. ...+.|+|++..+.
T Consensus 21 ~la~~L~~~g~~v~vid~~~~---------~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (140)
T 3fwz_A 21 LLGEKLLASDIPLVVIETSRT---------RVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPN 81 (140)
T ss_dssp HHHHHHHHTTCCEEEEESCHH---------HHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSC
T ss_pred HHHHHHHHCCCCEEEEECCHH---------HHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCC
Confidence 478999999999999976531 12223345776654332 12222 23578999877654
No 235
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=42.05 E-value=1.2e+02 Score=25.78 Aligned_cols=69 Identities=3% Similarity=-0.047 Sum_probs=42.2
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+..+ +..++.+++++.. . ...++.+++. ..|+++..+. ...-.-.+.+|+..|++
T Consensus 27 ~~~~lvav~d~~~------~~~~~~a~~~~~~---~---~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGkh 92 (336)
T 2p2s_A 27 AGAELAGVFESDS------DNRAKFTSLFPSV---P---FAASAEQLITDASIDLIACAVI--PCDRAELALRTLDAGKD 92 (336)
T ss_dssp TTCEEEEEECSCT------TSCHHHHHHSTTC---C---BCSCHHHHHTCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEeCCCH------HHHHHHHHhcCCC---c---ccCCHHHHhhCCCCCEEEEeCC--hhhHHHHHHHHHHCCCc
Confidence 5778764444322 2223444555321 1 1257788886 5898887775 33334556789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 93 Vl~EK 97 (336)
T 2p2s_A 93 FFTAK 97 (336)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99864
No 236
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=41.48 E-value=51 Score=26.77 Aligned_cols=60 Identities=10% Similarity=0.035 Sum_probs=31.7
Q ss_pred HHHhcCceEEEEEecCCCcch-----hHhhhhhhhhcccCceE---EEc------------cchhHHHhhhcccEEEEcC
Q 017085 6 LLRGVGTKVNWITIQKPSEED-----EVIYSLEHKMWDRGVQV---ISA------------KGQETINTALKADLIVLNT 65 (377)
Q Consensus 6 ~L~~~G~eV~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~~Div~~~~ 65 (377)
.+.+.|++|++++...+.... .............|+.. ..+ ..+..++++.+||+|+.+.
T Consensus 26 ~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv~~~~~L~~~D~~~~~~~~~~~~l~~~ir~~~PdvV~t~~ 105 (242)
T 2ixd_A 26 KYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGVKTRLNLAMPDRGLYMKEEYIREIVKVIRTYKPKLVFAPY 105 (242)
T ss_dssp HHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTCCEEEEEEECTTCCCCCHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred HHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCCCeEEECCCCCCCCCChHHHHHHHHHHHHHcCCCEEEECC
Confidence 445689999999855442211 11111222222234431 111 1344566778999999875
No 237
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=40.56 E-value=1.7e+02 Score=25.65 Aligned_cols=104 Identities=10% Similarity=-0.042 Sum_probs=59.9
Q ss_pred EEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc---------ccHHHHHHHHHHHhcCCCCcEEEe
Q 017085 181 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHFV 251 (377)
Q Consensus 181 ~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~---------~~~~~~~l~~~~~~~~~~~~v~~~ 251 (377)
+.+|-..-. ..+..++.+..+++ .+..++..+.-.+. ..+....+.+.+++.|++--....
T Consensus 145 ~Iigpcsve-s~e~a~~~a~~~k~---------aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~~ 214 (385)
T 3nvt_A 145 FVFGPCSVE-SYEQVAAVAESIKA---------KGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEIV 214 (385)
T ss_dssp EEEECSBCC-CHHHHHHHHHHHHH---------TTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECC
T ss_pred EEEEeCCcC-CHHHHHHHHHHHHH---------cCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEecC
Confidence 345654443 66777777665543 34555555542110 113456778888888875222222
Q ss_pred cCcCCHHHHHHhcCEEEecCCCCCCccchHHH-HHHHcCCcEEEeCCC
Q 017085 252 NKTLTVAPYLAAIDVLVQNSQAWGECFGRITI-EAMAFQLPVLGTAAG 298 (377)
Q Consensus 252 g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~-Ea~a~g~PvI~s~~~ 298 (377)
.. ..+..+...+|++=.||. +.....++ ++...|+||+.+.-.
T Consensus 215 d~-~~~~~l~~~vd~lkIgs~---~~~n~~LL~~~a~~gkPVilk~G~ 258 (385)
T 3nvt_A 215 TP-ADIEVALDYVDVIQIGAR---NMQNFELLKAAGRVDKPILLKRGL 258 (385)
T ss_dssp SG-GGHHHHTTTCSEEEECGG---GTTCHHHHHHHHTSSSCEEEECCT
T ss_pred CH-HHHHHHHhhCCEEEECcc---cccCHHHHHHHHccCCcEEEecCC
Confidence 22 344444445899999996 44444555 456789999998633
No 238
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=40.53 E-value=2.2e+02 Score=26.22 Aligned_cols=105 Identities=13% Similarity=0.187 Sum_probs=63.6
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-----CcEEEecC--------
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-----DRVHFVNK-------- 253 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-----~~v~~~g~-------- 253 (377)
+...|.-.+ +++-+...++-.|.+..+.++++.|.|.-.- .-.+.+...+.+.|++ .+|.+...
T Consensus 256 DDiqGTa~V--~lAgllnAlki~gk~l~d~riv~~GAGaAg~-gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r 332 (555)
T 1gq2_A 256 DDIQGTASV--AVAGLLAALRITKNRLSDHTVLFQGAGEAAL-GIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGR 332 (555)
T ss_dssp TTTHHHHHH--HHHHHHHHHHHHTSCGGGCCEEEECCSHHHH-HHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTC
T ss_pred CccchHHHH--HHHHHHHHHHHhCCChhhcEEEEECCCHHHH-HHHHHHHHHHHHcCCChHHHhCcEEEEECCCeeeCCC
Confidence 456665432 2222333333333355789999999983211 1233444444446774 56666531
Q ss_pred ----------------cCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHc--CCcEEEe
Q 017085 254 ----------------TLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAF--QLPVLGT 295 (377)
Q Consensus 254 ----------------~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~--g~PvI~s 295 (377)
...+.+.+.. +|+++-.|.. ...|.--++++|+. ..|+|-.
T Consensus 333 ~~l~~~k~~~A~~~~~~~~L~eav~~vkp~vlIG~S~~-~g~ft~evv~~Ma~~~~~PIIFa 393 (555)
T 1gq2_A 333 ASLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAI-GGAFTQQILQDMAAFNKRPIIFA 393 (555)
T ss_dssp SSCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSCC-TTCSCHHHHHHHHHHCSSCEEEE
T ss_pred CCchHHHHHHHhhcCCCCCHHHHHhhcCCCEEEEecCC-CCCCCHHHHHHHHhcCCCCEEEE
Confidence 0247888885 9999988852 57788889999994 7777754
No 239
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=40.42 E-value=5.7 Score=20.05 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=21.3
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
+++-+++|+.+ +..+.+++.+++.++ +|.|.|
T Consensus 4 qvrtiwvggtp----eelkklkeeakkani--rvtfwg 35 (36)
T 2ki0_A 4 QVRTIWVGGTP----EELKKLKEEAKKANI--RVTFWG 35 (36)
T ss_dssp SCCCCCBCCCH----HHHHHHHHHHHHHCC--CCCBCC
T ss_pred eeEEEEecCCH----HHHHHHHHHHHhccE--EEEeec
Confidence 45666788764 456777777777765 466655
No 240
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=40.03 E-value=68 Score=22.24 Aligned_cols=111 Identities=10% Similarity=-0.000 Sum_probs=62.4
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHH-HhcCEEEecCCCCCCccchHHHHHHH---cCC
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMA---FQL 290 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~-~~adv~l~ps~~~~e~~~~~~~Ea~a---~g~ 290 (377)
..+++|+.+.. .....+....+..+ ..+......++....+ ...|++++-..- .+.-|..+++.+. ..+
T Consensus 3 ~~~ilivdd~~----~~~~~l~~~L~~~~--~~v~~~~~~~~~~~~~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~ 75 (135)
T 3eqz_A 3 LNRVFIVDDDT----LTCNLLKTIVEPIF--GNVEAFQHPRAFLTLSLNKQDIIILDLMM-PDMDGIEVIRHLAEHKSPA 75 (135)
T ss_dssp CCEEEEECSCH----HHHHHHHHHHTTTC--SCEEEESCHHHHTTSCCCTTEEEEEECCT-TTTHHHHHHHHHHHTTCCC
T ss_pred cceEEEEeCCH----HHHHHHHHHHHhhc--ceeeeecCHHHHHHhhccCCCEEEEeCCC-CCCCHHHHHHHHHhCCCCC
Confidence 35677777752 34566666666552 2344444322222221 115887764431 3444566666554 356
Q ss_pred cEEEeCCCCc------cc---ceecCcceeeecCCCCChhHHHHHHHHHhhCH
Q 017085 291 PVLGTAAGGT------TE---IVVNGTTGLLHPVGKEGITPLAKNIVKLATHV 334 (377)
Q Consensus 291 PvI~s~~~~~------~e---~~~~~~~g~~~~~~~~~~~~la~~i~~l~~~~ 334 (377)
|+|....... .. ....|..+++..|-+ .+++.++|.++....
T Consensus 76 ~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~--~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 76 SLILISGYDSGVLHSAETLALSCGLNVINTFTKPIN--TEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCC--HHHHHHHHHHHSCCC
T ss_pred CEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCC--HHHHHHHHHHHHhhc
Confidence 7765432221 11 233345688999888 999999999988744
No 241
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=39.90 E-value=41 Score=22.92 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEe
Q 017085 190 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 269 (377)
Q Consensus 190 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ 269 (377)
.|.+...+++++ ...+++|+....+. .....+..+++..+++ +.+.+...++...+......++
T Consensus 21 ~G~~~v~kai~~------------gka~lViiA~D~~~--~~~~~i~~~c~~~~ip--~~~~~s~~eLG~a~Gk~~~~~v 84 (101)
T 3on1_A 21 TGEEQVVKAVQN------------GQVTLVILSSDAGI--HTKKKLLDKCGSYQIP--VKVVGNRQMLGRAIGKHERVVI 84 (101)
T ss_dssp ESHHHHHHHHHT------------TCCSEEEEETTSCH--HHHHHHHHHHHHHTCC--EEEESCHHHHHHHTTSSCCSEE
T ss_pred ECHHHHHHHHHc------------CCCcEEEEeCCCCH--HHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCCcCeEEE
Confidence 356666666542 45777776654332 3567788888888876 5566666777777655332222
Q ss_pred cCCCCCCccchHHHH
Q 017085 270 NSQAWGECFGRITIE 284 (377)
Q Consensus 270 ps~~~~e~~~~~~~E 284 (377)
.-. .+|+.-.+.+
T Consensus 85 ai~--d~g~a~~i~~ 97 (101)
T 3on1_A 85 GVK--DAGFSRKLAA 97 (101)
T ss_dssp EEC--CHHHHHHHHH
T ss_pred EEE--CccHHHHHHH
Confidence 223 4555544443
No 242
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=39.58 E-value=1e+02 Score=25.84 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=16.0
Q ss_pred CHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 256 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 256 ~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++.++.. ..|+.+.-+. .+..+-.+.|+...|++
T Consensus 61 sl~el~~~~~~Dv~ii~vp--~~~~~~~v~ea~~~Gi~ 96 (294)
T 2yv1_A 61 TVKEAVKETDANASVIFVP--APFAKDAVFEAIDAGIE 96 (294)
T ss_dssp SHHHHHHHHCCCEEEECCC--HHHHHHHHHHHHHTTCS
T ss_pred CHHHHhhcCCCCEEEEccC--HHHHHHHHHHHHHCCCC
Confidence 3444444 4555554433 33344444455555555
No 243
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=39.39 E-value=13 Score=33.98 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=17.1
Q ss_pred cHhhHHHhcCceEEEEEec
Q 017085 2 ELAFLLRGVGTKVNWITIQ 20 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~ 20 (377)
+||+.|.++||+||++++.
T Consensus 27 ~La~~L~~rG~~VT~v~t~ 45 (482)
T 2pq6_A 27 KLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp HHHHHHHHTTCEEEEEEEH
T ss_pred HHHHHHHhCCCeEEEEeCC
Confidence 6899999999999999854
No 244
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=39.28 E-value=1e+02 Score=21.83 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=26.7
Q ss_pred cCEEEecCCCCCCccchHHHHHHH--cCCcEEEeCC---CC---cccceecCcceeeecCCCCChhHHHHH
Q 017085 264 IDVLVQNSQAWGECFGRITIEAMA--FQLPVLGTAA---GG---TTEIVVNGTTGLLHPVGKEGITPLAKN 326 (377)
Q Consensus 264 adv~l~ps~~~~e~~~~~~~Ea~a--~g~PvI~s~~---~~---~~e~~~~~~~g~~~~~~~~~~~~la~~ 326 (377)
.|++++-..- .+.-|..+++.+. ...|+|.-.. .. ..+.+..|..+++..+.+ .+++...
T Consensus 61 ~dlvilD~~l-~~~~g~~~~~~lr~~~~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~--~~~l~~~ 128 (145)
T 3kyj_B 61 VDLILLDIEM-PVMDGMEFLRHAKLKTRAKICMLSSVAVSGSPHAARARELGADGVVAKPSG--TVSHDLE 128 (145)
T ss_dssp CCEEEECTTS-CCCTTCHHHHHHHHHCCCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCS--CC-----
T ss_pred CCEEEEeCCC-CCCCHHHHHHHHHhcCCCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCC--HHHHHHH
Confidence 4666653321 2334555665543 2344443221 11 223445567788888776 5555443
No 245
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=39.12 E-value=1.7e+02 Score=25.05 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=46.0
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC------------cCCHHHHHHhcCEEEe--cCCCCCCc---
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK------------TLTVAPYLAAIDVLVQ--NSQAWGEC--- 277 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~------------~~~~~~~~~~adv~l~--ps~~~~e~--- 277 (377)
+.++-|+|-| .--..+.+.++.+|. +|..... ..++.++++.||++.+ |.. .++
T Consensus 141 g~tvGIiG~G-----~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt--~~T~~l 211 (334)
T 3kb6_A 141 RLTLGVIGTG-----RIGSRVAMYGLAFGM--KVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYT--KETHHM 211 (334)
T ss_dssp GSEEEEECCS-----HHHHHHHHHHHHTTC--EEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCC--TTTTTC
T ss_pred CcEEEEECcc-----hHHHHHHHhhcccCc--eeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCC--hhhccC
Confidence 3456677766 455666666666664 3444432 1468899999999774 554 454
Q ss_pred cchHHHHHHHcCCcEEEeCCCC
Q 017085 278 FGRITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 278 ~~~~~~Ea~a~g~PvI~s~~~~ 299 (377)
++-..+..|--|.-+|-+.-|+
T Consensus 212 i~~~~l~~mk~~a~lIN~aRG~ 233 (334)
T 3kb6_A 212 INEERISLMKDGVYLINTARGK 233 (334)
T ss_dssp BCHHHHHHSCTTEEEEECSCGG
T ss_pred cCHHHHhhcCCCeEEEecCccc
Confidence 4455666666666566554443
No 246
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=38.73 E-value=31 Score=27.28 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=57.4
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHH---cCC
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA---FQL 290 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a---~g~ 290 (377)
.+++|+.+.. .....+....+..+--..+.......+..+.+. ..|++++-..- .+.-|..+++.+. ..+
T Consensus 2 ~~ILivdd~~----~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~~dlvllD~~l-p~~~g~~~~~~lr~~~~~~ 76 (225)
T 3c3w_A 2 VKVFLVDDHE----VVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRL-PDGNGIELCRDLLSRMPDL 76 (225)
T ss_dssp EEEEEECSCH----HHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECSEE-TTEEHHHHHHHHHHHCTTC
T ss_pred cEEEEEcCCH----HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcCCCEEEEeCCC-CCCCHHHHHHHHHHhCCCC
Confidence 3455666542 345555565554431001112222233333333 35777753220 2234556665553 467
Q ss_pred cEEEeCCCC----cccceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 291 PVLGTAAGG----TTEIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 291 PvI~s~~~~----~~e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
|+|.-.... ..+.+..|..|++..+.+ .+++.++|..++.
T Consensus 77 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~--~~~L~~~i~~~~~ 120 (225)
T 3c3w_A 77 RCLILTSYTSDEAMLDAILAGASGYVVKDIK--GMELARAVKDVGA 120 (225)
T ss_dssp EEEEGGGSSSHHHHHHHHHHTCCCHHHHHHH--HHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHc
Confidence 887653322 222334567788888776 8999999988765
No 247
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=38.20 E-value=65 Score=20.02 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=35.0
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCC-cEEEec
Q 017085 185 SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVN 252 (377)
Q Consensus 185 ~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~g 252 (377)
|.+..|..+..+.-+.+ .|.+.| -.++++.|.........+..+.+..+..++|..+ +|..-|
T Consensus 24 rvstgkeleralqelek---alarag--arnvqitisaendeqakelleliarllqklgykdinvrvng 87 (96)
T 2jvf_A 24 RVSTGKELERALQELEK---ALARAG--ARNVQITISAENDEQAKELLELIARLLQKLGYKDINVRVNG 87 (96)
T ss_dssp ECCSSSHHHHHHHHHHH---HHHHHT--CSEEEEEEECSSHHHHHHHHHHHHHHHHHHTCSEEEEEEET
T ss_pred EEcccHHHHHHHHHHHH---HHHhcc--ccceEEEEEecChHHHHHHHHHHHHHHHHhCCCceEEEEcC
Confidence 45566777666655554 343332 2678888887764333233444455566677653 444444
No 248
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=37.99 E-value=1.7e+02 Score=24.41 Aligned_cols=31 Identities=16% Similarity=0.045 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHhh--CHHHHHHHHHHHHHHHHH
Q 017085 320 ITPLAKNIVKLAT--HVERRLTMGKRGYERVKE 350 (377)
Q Consensus 320 ~~~la~~i~~l~~--~~~~~~~~~~~~~~~~~~ 350 (377)
...++++|...|. ||+......+|+.++..+
T Consensus 141 ~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 173 (291)
T 1pq4_A 141 VKRQATTIAKELAELDPDNRDQYEANLAAFLAE 173 (291)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 5677777776665 787777777777665543
No 249
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=37.93 E-value=1.6e+02 Score=23.82 Aligned_cols=102 Identities=9% Similarity=0.006 Sum_probs=53.8
Q ss_pred cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCC--cEEEecCc--CCHHHHHHhc
Q 017085 189 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD--RVHFVNKT--LTVAPYLAAI 264 (377)
Q Consensus 189 ~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~--~v~~~g~~--~~~~~~~~~a 264 (377)
.|-...|..|+.-+.. .. .+-+++++|... ....-+.+.++..|... +-.|+|.. +-....+..=
T Consensus 47 ~kT~~~L~~A~~~i~~-i~------~~~~iLfVgtk~----~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~P 115 (241)
T 2xzm_B 47 EETWQKIKLAARVIAA-VQ------HPEDVMVVCSRI----YGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEP 115 (241)
T ss_dssp HHHHHHHHHHHHHHHH-CS------SGGGEEEECCSH----HHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCC
T ss_pred HHHHHHHHHHHHHHHH-Hh------CCCeEEEEECCH----HHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCC
Confidence 4445555555554432 21 123567888752 12334555565555421 12466642 2111234456
Q ss_pred CEEEecCCCCCCccchHHHHHHHcCCcEEEe-CCCCcccce
Q 017085 265 DVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIV 304 (377)
Q Consensus 265 dv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s-~~~~~~e~~ 304 (377)
|++++... ..-...+.||...|+|+|+- |....++.+
T Consensus 116 dlliV~Dp---~~e~~ai~EA~~l~IPvIalvDTn~~p~~V 153 (241)
T 2xzm_B 116 RVLIVTDP---RSDFQAIKEASYVNIPVIALCDSDSPLAYV 153 (241)
T ss_dssp SEEEESCT---TTTHHHHHHHTTTTCCEEECCCSSSCCTTC
T ss_pred CEEEEECC---CcchHHHHHHHHhCCCEEEEecCCCCcccc
Confidence 77666542 23356799999999999986 333334433
No 250
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=37.73 E-value=62 Score=27.70 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=26.6
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.+..+++..+|+++..+- .....-....++..|++||.+.
T Consensus 71 ~d~~~l~~~vDvV~~aTp--~~~h~~~a~~~l~aGk~Vi~sa 110 (334)
T 2czc_A 71 GTLNDLLEKVDIIVDATP--GGIGAKNKPLYEKAGVKAIFQG 110 (334)
T ss_dssp CBHHHHHTTCSEEEECCS--TTHHHHHHHHHHHHTCEEEECT
T ss_pred CcHHHhccCCCEEEECCC--ccccHHHHHHHHHcCCceEeec
Confidence 356677778999887664 2221223347888999999764
No 251
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=37.65 E-value=2e+02 Score=24.73 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=42.6
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+.. .+..+ .+++++.. ...++.+++. ..|+++..+. ...-.-.+.+|+..|++
T Consensus 28 ~~~~l~av~d~~------~~~~~-~a~~~g~~-------~~~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGkh 91 (359)
T 3e18_A 28 DNLEVHGVFDIL------AEKRE-AAAQKGLK-------IYESYEAVLADEKVDAVLIATP--NDSHKELAISALEAGKH 91 (359)
T ss_dssp TTEEEEEEECSS------HHHHH-HHHTTTCC-------BCSCHHHHHHCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCcEEEEEEcCC------HHHHH-HHHhcCCc-------eeCCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCC
Confidence 678877554432 12222 34555431 1267888887 7899888775 34444456789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 92 Vl~EK 96 (359)
T 3e18_A 92 VVCEK 96 (359)
T ss_dssp EEEES
T ss_pred EEeeC
Confidence 99764
No 252
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=37.59 E-value=2.1e+02 Score=25.46 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=46.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcC--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQ-- 289 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g-- 289 (377)
++++++-+-+. ..+..++.+++++.+. +... .++.+++. ..|+++..+. ...-.-.+.+|+..|
T Consensus 48 ~~~~lvav~d~------~~~~~~~~a~~~g~~~-~~~~---~~~~~ll~~~~vD~V~i~tp--~~~H~~~~~~al~aG~~ 115 (438)
T 3btv_A 48 SQFQITALYSP------KIETSIATIQRLKLSN-ATAF---PTLESFASSSTIDMIVIAIQ--VASHYEVVMPLLEFSKN 115 (438)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTCTT-CEEE---SSHHHHHHCSSCSEEEECSC--HHHHHHHHHHHHHHGGG
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCCc-ceee---CCHHHHhcCCCCCEEEEeCC--cHHHHHHHHHHHHCCCC
Confidence 57887655553 2355667777777642 2222 46778886 5899888775 333344566899999
Q ss_pred ----CcEEEeC
Q 017085 290 ----LPVLGTA 296 (377)
Q Consensus 290 ----~PvI~s~ 296 (377)
++|++-.
T Consensus 116 ~~~~khVl~EK 126 (438)
T 3btv_A 116 NPNLKYLFVEW 126 (438)
T ss_dssp CTTCCEEEEES
T ss_pred cccceeEEecC
Confidence 9999864
No 253
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=37.44 E-value=1.6e+02 Score=24.29 Aligned_cols=61 Identities=5% Similarity=0.103 Sum_probs=33.8
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-----CCHHHHHHhcCEEEecCCCCCCccchHHHHH
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-----LTVAPYLAAIDVLVQNSQAWGECFGRITIEA 285 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-----~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea 285 (377)
.-.++.+|+|..+.+ +++.+...+...-.|+. +.+..+..++|++++-.. .-..+..++|.
T Consensus 230 ~~~v~~vGDGiNDa~--------m~k~l~~advgiaiGfl~~~v~~~~d~~~e~~Divl~~d~--~~~v~~~il~~ 295 (297)
T 4fe3_A 230 NSNIILLGDSQGDLR--------MADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVKEE--SLEVVNSILQK 295 (297)
T ss_dssp CCEEEEEESSGGGGG--------TTTTCSCCSEEEEEEEECSSHHHHHHHHHHHSSEEEETCC--BCHHHHHHHHH
T ss_pred CCEEEEEeCcHHHHH--------HHhCccccCeEEEEEecchhHHHhHHHHHhhCCEEEECCC--ChHHHHHHHHh
Confidence 346677899865432 11223334555666653 234556789999997554 33334444443
No 254
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=37.25 E-value=94 Score=25.03 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=32.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHh-----hhcccEEEEc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT-----ALKADLIVLN 64 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Div~~~ 64 (377)
.+|++|.++|++|++++........ ...++.++.......... ..+.|+++..
T Consensus 34 aiA~~~~~~Ga~V~lv~~~~~~~~~----------~~~~~~~~~v~s~~em~~~v~~~~~~~Dili~a 91 (232)
T 2gk4_A 34 IITETLLSAGYEVCLITTKRALKPE----------PHPNLSIREITNTKDLLIEMQERVQDYQVLIHS 91 (232)
T ss_dssp HHHHHHHHTTCEEEEEECTTSCCCC----------CCTTEEEEECCSHHHHHHHHHHHGGGCSEEEEC
T ss_pred HHHHHHHHCCCEEEEEeCCcccccc----------CCCCeEEEEHhHHHHHHHHHHHhcCCCCEEEEc
Confidence 4789999999999999865431110 013556666554433322 2457877765
No 255
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=37.17 E-value=13 Score=30.62 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.1
Q ss_pred cHhhHHHhcCceEEEEEecCC
Q 017085 2 ELAFLLRGVGTKVNWITIQKP 22 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~ 22 (377)
.|+++|++.| +|+|+++..+
T Consensus 19 ~L~~~l~~~g-~V~VvAP~~~ 38 (251)
T 2wqk_A 19 ALREALKSLG-RVVVVAPDRN 38 (251)
T ss_dssp HHHHHHTTTS-EEEEEEESSC
T ss_pred HHHHHHHhCC-CEEEEeeCCC
Confidence 3788999988 6999997654
No 256
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=37.12 E-value=1.7e+02 Score=24.35 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=19.6
Q ss_pred CHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCcE
Q 017085 256 TVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPV 292 (377)
Q Consensus 256 ~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~Pv 292 (377)
++.++.. ..|+.+..+. .+..+-.+.|++..|+++
T Consensus 55 sl~el~~~~~~D~viI~tP--~~~~~~~~~ea~~~Gi~~ 91 (288)
T 2nu8_A 55 TVREAVAATGATASVIYVP--APFCKDSILEAIDAGIKL 91 (288)
T ss_dssp SHHHHHHHHCCCEEEECCC--GGGHHHHHHHHHHTTCSE
T ss_pred CHHHHhhcCCCCEEEEecC--HHHHHHHHHHHHHCCCCE
Confidence 4555554 5666665544 444455556666666664
No 257
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=37.10 E-value=1.3e+02 Score=25.09 Aligned_cols=87 Identities=16% Similarity=0.042 Sum_probs=49.8
Q ss_pred HHHHHhcCEEEecCCCCCCc----cchHHHHHHHcC--CcEEEeCCCCccccee-----c---CcceeeecCCCCChhHH
Q 017085 258 APYLAAIDVLVQNSQAWGEC----FGRITIEAMAFQ--LPVLGTAAGGTTEIVV-----N---GTTGLLHPVGKEGITPL 323 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~----~~~~~~Ea~a~g--~PvI~s~~~~~~e~~~-----~---~~~g~~~~~~~~~~~~l 323 (377)
..-++.||+++..... .|+ +--.+++++... .++|.... ++..+-. + +-. +..++.+ ...+
T Consensus 61 ~~~l~~Adlvv~~G~~-lE~~~~~w~~k~~~~~~~~~~~~~v~~s~-gi~~~~~~~~~~~~~~dPH-vWldp~~--~~~~ 135 (294)
T 3hh8_A 61 AEKTSNADVIFYNGIN-LEDGGQAWFTKLVKNAQKTKNKDYFAVSD-GIDVIYLEGASEKGKEDPH-AWLNLEN--GIIY 135 (294)
T ss_dssp HHHHHHCSEEEECCTT-SSCSTTSHHHHHHHHTTCCBTTTEEETTT-TSCCCBSTTCCSTTCBCCC-GGGSHHH--HHHH
T ss_pred HHHHHhCCEEEEcCCC-ccchHHHHHHHHHHhccccCCceEEEccC-CcccccCCCccCCCCCCCc-eeCCHHH--HHHH
Confidence 4667889999987653 565 666777766543 56665432 2111100 0 011 2333334 6677
Q ss_pred HHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 017085 324 AKNIVKLAT--HVERRLTMGKRGYERVK 349 (377)
Q Consensus 324 a~~i~~l~~--~~~~~~~~~~~~~~~~~ 349 (377)
++.|...|. ||+......+|+.++..
T Consensus 136 a~~I~~~L~~~dP~~a~~y~~N~~~~~~ 163 (294)
T 3hh8_A 136 SKNIAKQLIAKDPKNKETYEKNLKAYVA 163 (294)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 777776665 78776667777666543
No 258
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=36.86 E-value=91 Score=22.20 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=32.7
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccc--hhHHHh--hhcccEEEEcCch
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--QETINT--ALKADLIVLNTAV 67 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~Div~~~~~~ 67 (377)
.+++.|.+.|++|+++..+.. ....+...+..++.... ...+.. ..+.|+|++..+.
T Consensus 20 ~la~~L~~~g~~V~~id~~~~---------~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~ 80 (141)
T 3llv_A 20 GLVRELTAAGKKVLAVDKSKE---------KIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD 80 (141)
T ss_dssp HHHHHHHHTTCCEEEEESCHH---------HHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred HHHHHHHHCCCeEEEEECCHH---------HHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence 478899999999999875321 11222234555544321 112221 2578999887653
No 259
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=36.10 E-value=1.3e+02 Score=22.24 Aligned_cols=38 Identities=3% Similarity=-0.095 Sum_probs=18.2
Q ss_pred HHhcCEEEecCCCCCCccc-hHHHHHH----HcCCcEEEeCCC
Q 017085 261 LAAIDVLVQNSQAWGECFG-RITIEAM----AFQLPVLGTAAG 298 (377)
Q Consensus 261 ~~~adv~l~ps~~~~e~~~-~~~~Ea~----a~g~PvI~s~~~ 298 (377)
+..+|.+++.|..|....| ..+++.+ ..|+++.+....
T Consensus 49 ~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fgs~ 91 (161)
T 3hly_A 49 VSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDSY 91 (161)
T ss_dssp HHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEECCC
T ss_pred HHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEEcC
Confidence 4567766654432232233 2344433 356777665433
No 260
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=36.08 E-value=1.6e+02 Score=23.22 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=43.0
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHHhcCCCC-cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcE
Q 017085 216 VHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 292 (377)
Q Consensus 216 ~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~Pv 292 (377)
-+++++|... ...+.+.+.++..|... +-.|+|.. +....-+..=|++++... ..-...+.||...|+|+
T Consensus 69 ~~iLfVgTk~----~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp---~~e~~ai~EA~~l~IPv 141 (208)
T 1vi6_A 69 SKILLVAARQ----YAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDP---AIDKQAVSEATAVGIPV 141 (208)
T ss_dssp GGEEEEECSG----GGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCT---TTTHHHHHHHHHTTCCE
T ss_pred CEEEEEeCCH----HHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECC---CcchhHHHHHHHhCCCE
Confidence 4666777652 23344555555554321 11244432 111112344566665442 22356789999999999
Q ss_pred EEe-CCCCcccce
Q 017085 293 LGT-AAGGTTEIV 304 (377)
Q Consensus 293 I~s-~~~~~~e~~ 304 (377)
|+- |....++.+
T Consensus 142 IalvDTn~~p~~V 154 (208)
T 1vi6_A 142 VALCDSNNSSADV 154 (208)
T ss_dssp EEEECTTCCCTTC
T ss_pred EEEeCCCCCcccc
Confidence 986 444444444
No 261
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=35.42 E-value=52 Score=27.99 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=36.9
Q ss_pred hhHHHhcCceEEEEEecCCCcchhH----hhhhhhhhcccCceEEEccc-----hhHHHhhhcccEEEEcC
Q 017085 4 AFLLRGVGTKVNWITIQKPSEEDEV----IYSLEHKMWDRGVQVISAKG-----QETINTALKADLIVLNT 65 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Div~~~~ 65 (377)
.++|.+.||+|..+.+..+.+.... ...........|++++.... ....++..+||++++-.
T Consensus 18 L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~ 88 (314)
T 3tqq_A 18 LRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLRDEVEQEKLIAMNADVMVVVA 88 (314)
T ss_dssp HHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSSSHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCCCHHHHHHHHhcCCCEEEEcC
Confidence 4677788999987775443221110 11233444567888876443 34556778999999875
No 262
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=34.66 E-value=65 Score=25.78 Aligned_cols=17 Identities=6% Similarity=0.044 Sum_probs=12.7
Q ss_pred hhHHHhhhcccEEEEcC
Q 017085 49 QETINTALKADLIVLNT 65 (377)
Q Consensus 49 ~~~~~~~~~~Div~~~~ 65 (377)
+..++++.+||+|+.+.
T Consensus 87 l~~~ir~~~P~~V~t~~ 103 (227)
T 1uan_A 87 LAQALRRLRPRVVFAPL 103 (227)
T ss_dssp HHHHHHHHCEEEEEEEC
T ss_pred HHHHHHHhCCCEEEeCC
Confidence 34566778899998876
No 263
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=34.58 E-value=78 Score=26.93 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=37.3
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc-----chhHHHhhhcccEEEEcCch
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-----GQETINTALKADLIVLNTAV 67 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Div~~~~~~ 67 (377)
.+++.|.+.||+|++++........... ....+...++.++... .+....+..++|+|+.....
T Consensus 25 ~l~~~L~~~g~~V~~l~R~~~~~~~~~~--~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 25 FVATASLDAHRPTYILARPGPRSPSKAK--IFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGG 93 (346)
T ss_dssp HHHHHHHHTTCCEEEEECSSCCCHHHHH--HHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEECCCG
T ss_pred HHHHHHHHCCCCEEEEECCCCCChhHHH--HHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEECCch
Confidence 4788999999999999865422111111 1122334566665533 23444444589999876543
No 264
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=34.51 E-value=2e+02 Score=23.86 Aligned_cols=124 Identities=8% Similarity=0.011 Sum_probs=64.5
Q ss_pred eEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEE
Q 017085 139 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 218 (377)
Q Consensus 139 ~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l 218 (377)
+.+...|++.+.-...... -........+.+|+++.+.=++..|... .++.+...++...+ +.+++ + + .+
T Consensus 114 ~~l~D~g~N~~p~~e~l~~--ia~~a~~~a~~lGi~~PkVAlLs~~~~g-~~~~~~~~~a~~l~-k~l~~---~-~--~~ 183 (279)
T 1yco_A 114 FLLTDCAMNIAPTQATLIE--IVENAKEVAQKLGLHHPKIALLSAAENF-NPKMPSSVLAKEVT-AHFND---Q-Q--EA 183 (279)
T ss_dssp EEEECSSSCSSCCHHHHHH--HHHHHHHHHHHTTCSSCEEEEECSCSSC-CTTCHHHHHHHHHH-HHHSS---C-S--SC
T ss_pred EEEEeCCCCCCCCHHHHHH--HHHHHHHHHHHhCCCCCeEEEEeccccC-CCCChHHHHHHHHH-HHHHh---C-C--CC
Confidence 5666677777643222111 1112233334488865555566666544 35667777776532 23332 1 2 35
Q ss_pred EEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcC
Q 017085 219 VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ 289 (377)
Q Consensus 219 ~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g 289 (377)
.+.|.- +....+...+.+.+.++ + .+-..+|++|+|... ..+..++++|.+..+
T Consensus 184 ~~dG~i-----~~D~A~~~~~~~~k~~~--------s---~~~G~adVlV~Pd~~-aGNi~~K~~~~~~~~ 237 (279)
T 1yco_A 184 TVFGPL-----SLDLATSEEAVAHKRYS--------G---PIMGDADILVVPTID-VGNCLYKSLTLFGHA 237 (279)
T ss_dssp EEEEEE-----CHHHHHCHHHHHHTTCC--------S---SCSSCCSEEECSSHH-HHHHHHHHHHHHSCC
T ss_pred EEEeeC-----cHHhhcCHHHHHhcCCC--------C---ccCCCCCEEEECCch-HHHHHHHHHHHhCCC
Confidence 677875 23333433333332221 1 112468999999863 344567777877644
No 265
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=34.45 E-value=41 Score=28.06 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.5
Q ss_pred cHhhHHHhcCceEEEEEecCC
Q 017085 2 ELAFLLRGVGTKVNWITIQKP 22 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~ 22 (377)
.|+++|++.| +|+|+++..+
T Consensus 18 aL~~aL~~~g-~V~VVAP~~~ 37 (280)
T 1l5x_A 18 LLYQFALSLG-DVDVVAPESP 37 (280)
T ss_dssp HHHHHHGGGS-EEEEEEESSC
T ss_pred HHHHHHHhCC-CEEEEecCCC
Confidence 3788998888 9999997754
No 266
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=34.18 E-value=1.7e+02 Score=24.70 Aligned_cols=87 Identities=11% Similarity=0.146 Sum_probs=49.4
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC
Q 017085 165 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 244 (377)
Q Consensus 165 ~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 244 (377)
-.+++.+|- -+...|.++|-.....=...++.++. ..+++++.++++..-. ..+.+.+.+++.|.
T Consensus 140 ~Ti~e~~g~-l~glkva~vGD~~~~rva~Sl~~~~~-----------~~~G~~v~~~~P~~~~---~~~~~~~~~~~~g~ 204 (306)
T 4ekn_B 140 YTIMREIGR-IDGIKIAFVGDLKYGRTVHSLVYALS-----------LFENVEMYFVSPKELR---LPKDIIEDLKAKNI 204 (306)
T ss_dssp HHHHHHHSC-STTCEEEEESCTTTCHHHHHHHHHHH-----------TSSSCEEEEECCGGGC---CCHHHHHHHHHTTC
T ss_pred HHHHHHhCC-cCCCEEEEEcCCCCCcHHHHHHHHHH-----------hcCCCEEEEECCcccc---cCHHHHHHHHHcCC
Confidence 456777763 34678889995432222233333333 2247899999974211 12445555555553
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
.+... +++.+.+..||++....
T Consensus 205 --~~~~~---~d~~eav~~aDvvy~~~ 226 (306)
T 4ekn_B 205 --KFYEK---ESLDDLDDDIDVLYVTR 226 (306)
T ss_dssp --CEEEE---SCGGGCCTTCSEEEECC
T ss_pred --EEEEE---cCHHHHhcCCCEEEeCC
Confidence 34433 45667788999877643
No 267
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=33.60 E-value=1.9e+02 Score=23.51 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=54.9
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCC-cEEEecCc--CCHHHHHHh
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT--LTVAPYLAA 263 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~g~~--~~~~~~~~~ 263 (377)
+-.|-...|.+|+.-+. ... .+-+++++|... ...+.+.+.+...|... +-.|+|.. +....-+..
T Consensus 83 dL~kT~~~L~~A~~~i~-~~~------~~~~iLfVgTk~----~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~ 151 (253)
T 3bch_A 83 NLKRTWEKLLLAARAIV-AIE------NPADVSVISSRN----TGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFRE 151 (253)
T ss_dssp CHHHHHHHHHHHHHHHH-TCS------SGGGEEEEECSH----HHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCS
T ss_pred eHHHHHHHHHHHHHHHH-HHh------CCCeEEEEeCCH----HHHHHHHHHHHHhCCeeecceecCCcccCccccccCC
Confidence 33455555666655443 211 234567788752 22344556666655321 11344432 111122445
Q ss_pred cCEEEecCCCCCCccchHHHHHHHcCCcEEEe-CCCCcccce
Q 017085 264 IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIV 304 (377)
Q Consensus 264 adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s-~~~~~~e~~ 304 (377)
=|++++... ..-...+.||...|+|+|+- |+...++.+
T Consensus 152 PdlliV~Dp---~~e~~AI~EA~~lgIPvIalvDTn~dp~~V 190 (253)
T 3bch_A 152 PRLLVVTDP---RADHQPLTEASYVNLPTIALCNTDSPLRYV 190 (253)
T ss_dssp CSEEEESCT---TTTHHHHHHHHHTTCCEEEEECTTCCCTTC
T ss_pred CCEEEEECC---CccchHHHHHHHhCCCEEEEEcCCCCcccC
Confidence 677665432 22356789999999999986 444444444
No 268
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=33.52 E-value=2.4e+02 Score=24.45 Aligned_cols=89 Identities=12% Similarity=0.157 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCccc-HHHHHHHHHHHhc
Q 017085 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT-KFESELRNYVMQK 242 (377)
Q Consensus 164 ~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~-~~~~~l~~~~~~~ 242 (377)
--.+++.+|- -+...|.++|-. .. .+...+..+..++ ++.+.++++..-..+ ...+.+++.+++.
T Consensus 164 l~Ti~E~~g~-l~gl~va~vGD~-~~----rva~Sl~~~~~~l--------G~~v~~~~P~~l~p~~~~~~~~~~~a~~~ 229 (359)
T 2w37_A 164 FMTVKENFGK-LQGLTLTFMGDG-RN----NVANSLLVTGAIL--------GVNIHIVAPKALFPTEETQNIAKGFAEKS 229 (359)
T ss_dssp HHHHHHHHSC-CTTCEEEEESCT-TS----HHHHHHHHHHHHH--------TCEEEEECCGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-cCCeEEEEECCC-cc----chHHHHHHHHHHc--------CCEEEEECCccccCCHHHHHHHHHHHHHc
Confidence 3556777772 355788999964 12 2333333332222 578999998422111 2334455566666
Q ss_pred CCCCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 243 KIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 243 ~~~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
|. .+.+. +++.+.+..||++....
T Consensus 230 G~--~v~~~---~d~~eav~~aDvvytd~ 253 (359)
T 2w37_A 230 GA--KLVIT---DDLDEGLKGSNVVYTDV 253 (359)
T ss_dssp TC--CEEEE---SCHHHHHTTCSEEEECC
T ss_pred CC--eEEEE---eCHHHHhcCCCEEEEcc
Confidence 63 35544 57888999999877644
No 269
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=33.46 E-value=1.9e+02 Score=23.42 Aligned_cols=202 Identities=13% Similarity=0.059 Sum_probs=89.6
Q ss_pred CceEEEEEecCCCcc-hhHhhhhhhhhcccCceEEEccc---------hhHHHhhhcccEEEEcCchh-hhHHHHHhhcC
Q 017085 11 GTKVNWITIQKPSEE-DEVIYSLEHKMWDRGVQVISAKG---------QETINTALKADLIVLNTAVA-GKWLDAVLKED 79 (377)
Q Consensus 11 G~eV~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~Div~~~~~~~-~~~~~~~~~~~ 79 (377)
...|-++.+....+. ......+.......|+.+..... ........++|.|++..... ...+..+...
T Consensus 8 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~- 86 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEGEHDYLRTELPK- 86 (291)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHSSCT-
T ss_pred CcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHhhcc-
Confidence 455566655433222 22333455556666776643221 12223457899999876432 2222222222
Q ss_pred CCccccceeEEeeeecccccchhhhccccccceeeeeccchhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhh
Q 017085 80 VPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA 159 (377)
Q Consensus 80 ~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~ 159 (377)
..|+|..-..... ...+.+............+.+.+ .| ..++.++....+..... . .
T Consensus 87 ----~iPvV~~~~~~~~-----------~~~~~V~~D~~~~g~~a~~~L~~-~G--~~~i~~i~~~~~~~~~~--~---R 143 (291)
T 3egc_A 87 ----TFPIVAVNRELRI-----------PGCGAVLSENVRGARTAVEYLIA-RG--HTRIGAIVGSAGLMTSR--E---R 143 (291)
T ss_dssp ----TSCEEEESSCCCC-----------TTCEEEEECHHHHHHHHHHHHHH-TT--CCSEEEECSCTTSHHHH--H---H
T ss_pred ----CCCEEEEecccCC-----------CCCCEEEECcHHHHHHHHHHHHH-cC--CCEEEEEeCCCCCcCHH--H---H
Confidence 2355543332210 12234444444444333333332 23 35677765433221110 0 0
Q ss_pred hhhhHHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHH
Q 017085 160 KRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 239 (377)
Q Consensus 160 ~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~ 239 (377)
....++ ..+..+++.....+ ..+......+...+.+.+. +.++...+++.+. .....+.+.+
T Consensus 144 ~~gf~~-~l~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----------~~~~~~ai~~~~d-----~~a~g~~~al 205 (291)
T 3egc_A 144 LKGFRA-AMSAAGLPVRQEWI-AAGGVRADNGRDGAIKVLT-----------GADRPTALLTSSH-----RITEGAMQAL 205 (291)
T ss_dssp HHHHHH-HHHHTTCCCCGGGE-EC------CCHHHHHHHHT-----------C-CCCSEEEESSH-----HHHHHHHHHH
T ss_pred HHHHHH-HHHHcCCCCCHHHe-EeCCCChhHHHHHHHHHHh-----------CCCCCcEEEECCc-----HHHHHHHHHH
Confidence 011122 22344665433222 2355555566544433322 2256667777664 3444566677
Q ss_pred HhcCCC--CcEEEecCc
Q 017085 240 MQKKIQ--DRVHFVNKT 254 (377)
Q Consensus 240 ~~~~~~--~~v~~~g~~ 254 (377)
++.|+. +.|.+.|+-
T Consensus 206 ~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 206 NVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp HHHTCCBTTTBEEEEES
T ss_pred HHcCCCCCCceEEEEec
Confidence 777764 778888874
No 270
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=33.28 E-value=44 Score=27.19 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=25.3
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCCCC
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAAGG 299 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~~~ 299 (377)
+++.+++ .+|+++--+. .+.. ...++ +..|+|+|+...|-
T Consensus 47 ~dl~~l~-~~DVvIDft~--p~a~-~~~~~-l~~g~~vVigTTG~ 86 (243)
T 3qy9_A 47 QHIADVK-GADVAIDFSN--PNLL-FPLLD-EDFHLPLVVATTGE 86 (243)
T ss_dssp SCTTTCT-TCSEEEECSC--HHHH-HHHHT-SCCCCCEEECCCSS
T ss_pred CCHHHHh-CCCEEEEeCC--hHHH-HHHHH-HhcCCceEeCCCCC
Confidence 3455556 8999885554 3332 23345 88999999876553
No 271
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=33.12 E-value=2.3e+02 Score=24.13 Aligned_cols=88 Identities=9% Similarity=0.060 Sum_probs=52.2
Q ss_pred HHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc-ccHHHHHHHHHHHhc
Q 017085 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVMQK 242 (377)
Q Consensus 164 ~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~-~~~~~~~l~~~~~~~ 242 (377)
--.+++.+|- -+...|.++|-. ..=...++.++.. -++++.++++..-. .+...+..++.+++.
T Consensus 145 l~Ti~e~~g~-l~glkva~vGD~--~rva~Sl~~~~~~------------~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~ 209 (323)
T 3gd5_A 145 LLTIRENFGR-LAGLKLAYVGDG--NNVAHSLLLGCAK------------VGMSIAVATPEGFTPDPAVSARASEIAGRT 209 (323)
T ss_dssp HHHHHHHHSC-CTTCEEEEESCC--CHHHHHHHHHHHH------------HTCEEEEECCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCCCEEEEECCC--CcHHHHHHHHHHH------------cCCEEEEECCCcccCCHHHHHHHHHHHHHc
Confidence 3456777773 356788899965 2223334444432 25889999974322 112344455555555
Q ss_pred CCCCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 243 KIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 243 ~~~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
|. .+.+. .++.+.+..+|++....
T Consensus 210 g~--~v~~~---~d~~eav~~aDvvyt~~ 233 (323)
T 3gd5_A 210 GA--EVQIL---RDPFEAARGAHILYTDV 233 (323)
T ss_dssp TC--CEEEE---SCHHHHHTTCSEEEECC
T ss_pred CC--eEEEE---CCHHHHhcCCCEEEEec
Confidence 53 34443 47888899999887654
No 272
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=32.76 E-value=2.1e+02 Score=25.87 Aligned_cols=71 Identities=7% Similarity=-0.009 Sum_probs=46.5
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcC--
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQ-- 289 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g-- 289 (377)
++++++-+-+. ..+..++.+++++++. +... .++.++++ ..|+++..+. ...-.-.+.+|+..|
T Consensus 67 ~~~~lvav~d~------~~~~a~~~a~~~g~~~-~~~~---~d~~ell~~~~vD~V~I~tp--~~~H~~~~~~al~aG~~ 134 (479)
T 2nvw_A 67 SQFQIVALYNP------TLKSSLQTIEQLQLKH-ATGF---DSLESFAQYKDIDMIVVSVK--VPEHYEVVKNILEHSSQ 134 (479)
T ss_dssp TTEEEEEEECS------CHHHHHHHHHHTTCTT-CEEE---SCHHHHHHCTTCSEEEECSC--HHHHHHHHHHHHHHSSS
T ss_pred CCeEEEEEEeC------CHHHHHHHHHHcCCCc-ceee---CCHHHHhcCCCCCEEEEcCC--cHHHHHHHHHHHHCCCC
Confidence 57887755553 2455667777777642 2222 46777786 5898888775 333344566899999
Q ss_pred ----CcEEEeC
Q 017085 290 ----LPVLGTA 296 (377)
Q Consensus 290 ----~PvI~s~ 296 (377)
++|++-.
T Consensus 135 ~~~~khVl~EK 145 (479)
T 2nvw_A 135 NLNLRYLYVEW 145 (479)
T ss_dssp CSSCCEEEEES
T ss_pred cCCceeEEEeC
Confidence 9999864
No 273
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=32.42 E-value=2.2e+02 Score=24.62 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---cCCcEEEe-CCCC---cc
Q 017085 231 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQLPVLGT-AAGG---TT 301 (377)
Q Consensus 231 ~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~g~PvI~s-~~~~---~~ 301 (377)
....+....+..|. .+.......+..+.+.. .|++++=-. -.+.-|+.+++.+. ..+|||.- ..+. ..
T Consensus 12 ~~~~l~~~L~~~g~--~v~~a~~~~eal~~l~~~~~DlvllDi~-mP~~dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~ 88 (368)
T 3dzd_A 12 ITSSLSAILEEEGY--HPDTAKTLREAEKKIKELFFPVIVLDVW-MPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAV 88 (368)
T ss_dssp HHHHHHHHHHHTTC--EEEEESSHHHHHHHHHHBCCSEEEEESE-ETTEETTTHHHHHHHHCTTCEEEEEECSSCCHHHH
T ss_pred HHHHHHHHHHHcCC--EEEEECCHHHHHHHHHhCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCCCeEEEEeCCCCHHHHH
Confidence 34445555555443 23333222333333332 455553111 02223555555543 45676653 3332 22
Q ss_pred cceecCcceeeecCCCCChhHHHHHHHHHhh
Q 017085 302 EIVVNGTTGLLHPVGKEGITPLAKNIVKLAT 332 (377)
Q Consensus 302 e~~~~~~~g~~~~~~~~~~~~la~~i~~l~~ 332 (377)
+.+..|..+++..|-+ .+++..+|.+++.
T Consensus 89 ~a~~~Ga~~yl~KP~~--~~~L~~~i~~~l~ 117 (368)
T 3dzd_A 89 KAIKKGAYEFLEKPFS--VERFLLTIKHAFE 117 (368)
T ss_dssp HHHHHTCCEEEESSCC--HHHHHHHHHHHHH
T ss_pred HHHhcCcceEEeCCCC--HHHHHHHHHHHHH
Confidence 3344577889999988 9999999988764
No 274
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=32.18 E-value=60 Score=24.48 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=23.7
Q ss_pred HHHHhcCEEEecCCCCCCccchHHHH---HHHcCCcEEEe
Q 017085 259 PYLAAIDVLVQNSQAWGECFGRITIE---AMAFQLPVLGT 295 (377)
Q Consensus 259 ~~~~~adv~l~ps~~~~e~~~~~~~E---a~a~g~PvI~s 295 (377)
+.+..||++|.--. +.-..+.+| |.+.|+|||+-
T Consensus 73 ~~i~~aD~vva~~~---~~d~Gt~~EiGyA~algKPVi~l 109 (165)
T 2khz_A 73 NWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCL 109 (165)
T ss_dssp HHHHHCSEEEEECS---SCCHHHHHHHHHHHHTCSSEEEE
T ss_pred HHHHhCCEEEEECC---CCCCCHHHHHHHHHHCCCEEEEE
Confidence 67899999876321 233345554 78999999986
No 275
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=31.95 E-value=1.4e+02 Score=27.23 Aligned_cols=101 Identities=8% Similarity=0.047 Sum_probs=59.8
Q ss_pred cchhHHHHHHHHH-HHHHH-hhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhc
Q 017085 189 GKGQDLFLHSFYE-SLELI-KEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAI 264 (377)
Q Consensus 189 ~Kg~~~ll~a~~~-l~~~l-~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~a 264 (377)
..|.+..++++.+ +.+.. .+......+-.+.|+|+-... ....+++.+.+++|++-+..+.|.. +++.. +..|
T Consensus 192 ~~G~~~a~~al~~~l~~~~~~~~~~~~~~~~VNIiG~~~~~--gD~~eik~lL~~~Gi~v~~~~~g~~t~~ei~~-~~~A 268 (492)
T 3u7q_A 192 SLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIG--GDAWSSRILLEEMGLRCVAQWSGDGSISEIEL-TPKV 268 (492)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCCCTTEEEEEEECCBT--TTTHHHHHHHHHTTCEEEEEEETTCCHHHHHH-GGGC
T ss_pred hHHHHHHHHHHHHHHhhhcccccccCCCCCcEEEECCCCCh--hhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-hhcC
Confidence 4578888887765 32210 000001134578888863211 2357899999999998777777653 44433 3466
Q ss_pred CEEEecCCCCCCccchHHHHHH--HcCCcEEEeC
Q 017085 265 DVLVQNSQAWGECFGRITIEAM--AFQLPVLGTA 296 (377)
Q Consensus 265 dv~l~ps~~~~e~~~~~~~Ea~--a~g~PvI~s~ 296 (377)
++-+..+. .++..+.+.| -+|+|.+...
T Consensus 269 ~~niv~~~----~~~~~~A~~Le~~~GiP~i~~~ 298 (492)
T 3u7q_A 269 KLNLVHCY----RSMNYISRHMEEKYGIPWMEYN 298 (492)
T ss_dssp SEEEESCH----HHHHHHHHHHHHHHCCCEEECC
T ss_pred cEEEEECh----HHHHHHHHHHHHHhCCceEecC
Confidence 66665432 1355667776 4799999764
No 276
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=31.63 E-value=2.3e+02 Score=23.69 Aligned_cols=35 Identities=17% Similarity=0.053 Sum_probs=19.6
Q ss_pred CCHHHHHH--h-cCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 255 LTVAPYLA--A-IDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 255 ~~~~~~~~--~-adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
.++.++.. . .|+.+.-+. .+...-.+.|+...|++
T Consensus 60 ~sl~el~~~~~~~DvaIi~vp--~~~~~~~v~ea~~~Gi~ 97 (297)
T 2yv2_A 60 DSVKEALAEHPEINTSIVFVP--APFAPDAVYEAVDAGIR 97 (297)
T ss_dssp SSHHHHHHHCTTCCEEEECCC--GGGHHHHHHHHHHTTCS
T ss_pred CCHHHHhhcCCCCCEEEEecC--HHHHHHHHHHHHHCCCC
Confidence 34455544 3 666665544 44555556666666666
No 277
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=31.40 E-value=48 Score=24.84 Aligned_cols=37 Identities=16% Similarity=0.006 Sum_probs=23.9
Q ss_pred HHHHhcCEEEecCCCCCCccchHHHH---HHHcCCcEEEeC
Q 017085 259 PYLAAIDVLVQNSQAWGECFGRITIE---AMAFQLPVLGTA 296 (377)
Q Consensus 259 ~~~~~adv~l~ps~~~~e~~~~~~~E---a~a~g~PvI~s~ 296 (377)
+.+..||++|.--.. .+.=+.+..| |.+.|+|||+-.
T Consensus 74 ~~i~~aD~vvA~ldg-~~~D~GT~~EiGyA~A~gkPVv~~~ 113 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIP-DEEDVGLGMELGYALSQGKYVLLVI 113 (157)
T ss_dssp HHHHTSSEEEEECCG-GGCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhCCEEEEEcCC-CCCCccHHHHHHHHHHCCCeEEEEE
Confidence 557899998754320 2222345554 789999999874
No 278
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=31.17 E-value=1.6e+02 Score=24.48 Aligned_cols=13 Identities=0% Similarity=-0.041 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhCH
Q 017085 322 PLAKNIVKLATHV 334 (377)
Q Consensus 322 ~la~~i~~l~~~~ 334 (377)
++.+.|..+.+||
T Consensus 186 ~~~d~l~~~~~D~ 198 (288)
T 1oi7_A 186 TFKDLLPLFNEDP 198 (288)
T ss_dssp CHHHHHHHHHTCT
T ss_pred CHHHHHHHHhcCC
Confidence 4566666665554
No 279
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=31.11 E-value=53 Score=22.33 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=37.3
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhc
Q 017085 190 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI 264 (377)
Q Consensus 190 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 264 (377)
.|.+...+++++ ...+++|+....+. .....+..++...+++ +.+.+...++...+...
T Consensus 22 ~G~~~v~kai~~------------gka~lViiA~D~~~--~~~~~i~~~c~~~~vp--~~~~~s~~eLG~A~Gk~ 80 (101)
T 3v7q_A 22 SGEDLVIKEIRN------------ARAKLVLLTEDASS--NTAKKVTDKCNYYKVP--YKKVESRAVLGRSIGKE 80 (101)
T ss_dssp ESHHHHHHHHHT------------TCCSEEEEETTSCH--HHHHHHHHHHHHTTCC--EEEESCHHHHHHHTTSS
T ss_pred cchhhhHHHHhc------------CceeEEEEeccccc--cchhhhcccccccCCC--eeeechHHHHHhhhCcc
Confidence 356666666542 45777776654322 3567788888888876 55556556776666543
No 280
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=31.06 E-value=60 Score=27.14 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=50.8
Q ss_pred CcEEEecCc-----CCHHHHHHhcCEEEecCCCCCCccch-HHHHHHHcCCcEEEeCCCCcccce-ecCcceeeecCCCC
Q 017085 246 DRVHFVNKT-----LTVAPYLAAIDVLVQNSQAWGECFGR-ITIEAMAFQLPVLGTAAGGTTEIV-VNGTTGLLHPVGKE 318 (377)
Q Consensus 246 ~~v~~~g~~-----~~~~~~~~~adv~l~ps~~~~e~~~~-~~~Ea~a~g~PvI~s~~~~~~e~~-~~~~~g~~~~~~~~ 318 (377)
..|+|.|.. ....+.+..||+++.-..+ ..-+|. .+.++...|.|+|.-+......+- .+...- ++-.++
T Consensus 175 P~IV~FGE~lp~~~~~~~~~~~~aDlllviGTS-l~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d-~~~~g~- 251 (285)
T 3glr_A 175 PDIVFFGEPLPQRFLLHVVDFPMADLLLILGTS-LEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRD-VAQLGD- 251 (285)
T ss_dssp EEECCTTSBCCGGGGGHHHHHHHCSEEEEESCC-CCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTE-EEEESC-
T ss_pred CcEEEeCCcCCHHHHHHHHHHhcCCEEEEeCCC-CccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCcc-EEEcCC-
Confidence 457777752 1234556789987753221 222221 233556677888877654433211 011111 223344
Q ss_pred ChhHHHHHHHHHhhCHHHHHHHHHHHHH
Q 017085 319 GITPLAKNIVKLATHVERRLTMGKRGYE 346 (377)
Q Consensus 319 ~~~~la~~i~~l~~~~~~~~~~~~~~~~ 346 (377)
.++....|.+.+-=.++.+++.+...+
T Consensus 252 -~~~~~~~L~~~lgw~~el~~~~~~~~~ 278 (285)
T 3glr_A 252 -VVHGVESLVELLGWTEEMRDLVQRETG 278 (285)
T ss_dssp -HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHhhHh
Confidence 777777777777644556666555544
No 281
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=31.05 E-value=75 Score=27.02 Aligned_cols=62 Identities=19% Similarity=0.076 Sum_probs=38.0
Q ss_pred hhHHHhcCceEEEEEecCCCcchhHh----hhhhhhhcccCceEEEccch-----hHHHhhhcccEEEEcC
Q 017085 4 AFLLRGVGTKVNWITIQKPSEEDEVI----YSLEHKMWDRGVQVISAKGQ-----ETINTALKADLIVLNT 65 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Div~~~~ 65 (377)
.++|.+.||+|..+.+..+.+..... ..........|++++..... ...++..+||++++-.
T Consensus 20 L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~ 90 (317)
T 3rfo_A 20 LRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIREKDEYEKVLALEPDLIVTAA 90 (317)
T ss_dssp HHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEECCSCTTSHHHHHHHHHHCCSEEEESS
T ss_pred HHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEEccccCCCHHHHHHHHhcCCCEEEEcC
Confidence 46677789999877765443222110 12234445678888764332 3446678999999875
No 282
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=30.89 E-value=1e+02 Score=21.29 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCCcEEEecCc---CCH-HHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC
Q 017085 232 ESELRNYVMQKKIQDRVHFVNKT---LTV-APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 232 ~~~l~~~~~~~~~~~~v~~~g~~---~~~-~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
.+.|++.++++|++-.|.-.|.. +.+ .+-...||++++.+. .+- .=.|-+ .|+|++-+..
T Consensus 22 AeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d--~~v---~~~~RF-~gk~v~~~~v 85 (106)
T 2m1z_A 22 AQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVD--TKV---RNKERF-DGKVVLEVPV 85 (106)
T ss_dssp HHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEES--SCC---STHHHH-TTSEEEEECT
T ss_pred HHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEecc--ccc---cchhcc-CCCcEEEEcH
Confidence 46788889999988778777764 344 477899999998765 211 112333 3999998764
No 283
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=30.71 E-value=2.5e+02 Score=23.97 Aligned_cols=90 Identities=10% Similarity=0.097 Sum_probs=52.1
Q ss_pred HHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCccc-HHHHHHHHHHHhc
Q 017085 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT-KFESELRNYVMQK 242 (377)
Q Consensus 164 ~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~-~~~~~l~~~~~~~ 242 (377)
--.+++.+|.+-+...+.++|-. .. .+...+.....+ -++++.++++..-..+ ...+.+++.+++.
T Consensus 142 l~Ti~e~~g~~l~gl~va~vGD~-~~----~va~Sl~~~~~~--------~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~ 208 (335)
T 1dxh_A 142 VLTMREHSDKPLHDISYAYLGDA-RN----NMGNSLLLIGAK--------LGMDVRIAAPKALWPHDEFVAQCKKFAEES 208 (335)
T ss_dssp HHHHHHTCSSCGGGCEEEEESCC-SS----HHHHHHHHHHHH--------TTCEEEEECCGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCeEEEEecCC-cc----chHHHHHHHHHH--------cCCEEEEECCcccCCCHHHHHHHHHHHHHc
Confidence 35567777622345789999964 12 233333332222 3689999998422111 2334455556666
Q ss_pred CCCCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 243 KIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 243 ~~~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
|. .+.+. +++.+.+..+|++....
T Consensus 209 G~--~v~~~---~d~~eav~~aDvvytd~ 232 (335)
T 1dxh_A 209 GA--KLTLT---EDPKEAVKGVDFVHTDV 232 (335)
T ss_dssp TC--EEEEE---SCHHHHTTTCSEEEECC
T ss_pred CC--eEEEE---eCHHHHhCCCCEEEeCC
Confidence 53 35544 57888899999887644
No 284
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=30.58 E-value=73 Score=26.83 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=29.3
Q ss_pred CCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 255 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 255 ~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++.+++. .+|+++..+. .....-.+.+|+..|++|++-.
T Consensus 59 ~~~~~~l~~~~~D~V~i~tp--~~~h~~~~~~al~~Gk~v~~eK 100 (315)
T 3c1a_A 59 SDWRSVVSAPEVEAVIIATP--PATHAEITLAAIASGKAVLVEK 100 (315)
T ss_dssp SSTHHHHTCTTCCEEEEESC--GGGHHHHHHHHHHTTCEEEEES
T ss_pred CCHHHHhhCCCCCEEEEeCC--hHHHHHHHHHHHHCCCcEEEcC
Confidence 46777775 7899888775 4444455668899999999764
No 285
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=30.57 E-value=77 Score=26.96 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=36.4
Q ss_pred hhHHHhcCceEEEEEecCCCcchhH----hhhhhhhhcccCceEEEccc-----hhHHHhhhcccEEEEcC
Q 017085 4 AFLLRGVGTKVNWITIQKPSEEDEV----IYSLEHKMWDRGVQVISAKG-----QETINTALKADLIVLNT 65 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Div~~~~ 65 (377)
.++|.+.||+|..+.+..+.+.... ...........|++++.... ....++..+||++++-.
T Consensus 23 L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~ 93 (318)
T 3q0i_A 23 LAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDESKQQLAALNADLMVVVA 93 (318)
T ss_dssp HHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHTTCCSEEEESS
T ss_pred HHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHHHHHHHHhcCCCEEEEeC
Confidence 4567778999987765433221110 11233445567888865433 34556778999999864
No 286
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=30.48 E-value=1.7e+02 Score=25.19 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH-cCCcEEEeC
Q 017085 231 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA-FQLPVLGTA 296 (377)
Q Consensus 231 ~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a-~g~PvI~s~ 296 (377)
....|.+.+++.|++ +.-..+-.+-.+++.. +|++=.+|. +-.-..++++++ .|+|||.|.
T Consensus 79 ~~~~L~~~~~~~Gi~--~~st~fD~~svd~l~~~~v~~~KI~S~---~~~N~pLL~~va~~gKPviLst 142 (350)
T 3g8r_A 79 QMQKLVAEMKANGFK--AICTPFDEESVDLIEAHGIEIIKIASC---SFTDWPLLERIARSDKPVVAST 142 (350)
T ss_dssp HHHHHHHHHHHTTCE--EEEEECSHHHHHHHHHTTCCEEEECSS---STTCHHHHHHHHTSCSCEEEEC
T ss_pred HHHHHHHHHHHcCCc--EEeccCCHHHHHHHHHcCCCEEEECcc---cccCHHHHHHHHhhCCcEEEEC
Confidence 456777888888764 2222222222344433 688888885 555666776654 899999885
No 287
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=30.07 E-value=1.6e+02 Score=21.42 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=56.3
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--hcCEEEecCCCCCCccchHHHHHHHc--C
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAF--Q 289 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~--~adv~l~ps~~~~e~~~~~~~Ea~a~--g 289 (377)
...+++|+.+.. .....+....++.+....+.......+..+.+. ..|++++-..- .+.-|..+++.+.. .
T Consensus 24 ~~~~ILivdd~~----~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~l-~~~~g~~l~~~lr~~~~ 98 (164)
T 3t8y_A 24 RVIRVLVVDDSA----FMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEM-PNLNGIEALKLIMKKAP 98 (164)
T ss_dssp CCEEEEEECSCH----HHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSSC-SSSCHHHHHHHHHHHSC
T ss_pred CccEEEEEcCCH----HHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCCC-CCCCHHHHHHHHHhcCC
Confidence 346777777652 345556666665432111222322233333332 35777754331 34445666655532 3
Q ss_pred CcEEEe-CCCC-----cccceecCcceeeecCCCCC-------hhHHHHHHHHHhh
Q 017085 290 LPVLGT-AAGG-----TTEIVVNGTTGLLHPVGKEG-------ITPLAKNIVKLAT 332 (377)
Q Consensus 290 ~PvI~s-~~~~-----~~e~~~~~~~g~~~~~~~~~-------~~~la~~i~~l~~ 332 (377)
+|+|.. .... ..+.+..|..+++..+.+.+ .+++.+++.+.+.
T Consensus 99 ~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 99 TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 565543 2222 12445567788888876510 1455555555554
No 288
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=30.05 E-value=1.3e+02 Score=22.93 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCc---CCHHHHHHhcC---EEEecCCCC--CCccchHHHHHHHcCCcEEEe
Q 017085 231 FESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAID---VLVQNSQAW--GECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 231 ~~~~l~~~~~~~~~~~~v~~~g~~---~~~~~~~~~ad---v~l~ps~~~--~e~~~~~~~Ea~a~g~PvI~s 295 (377)
+...+.+.++++|.. +.++... +++.+.+...| +++.|.-.. ..++-..+++++..|+|+++.
T Consensus 12 ~~~~i~~~l~~~G~~--~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~PilGI 82 (192)
T 1i1q_B 12 FTWNLADQLRTNGHN--VVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGI 82 (192)
T ss_dssp SHHHHHHHHHHTTCE--EEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEE
T ss_pred HHHHHHHHHHHCCCe--EEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHHhcCCCEEEE
Confidence 456666777777753 4444433 33434443333 777765420 112334577888889999974
No 289
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=29.74 E-value=20 Score=32.67 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=17.6
Q ss_pred cHhhHHHhc-CceEEEEEecC
Q 017085 2 ELAFLLRGV-GTKVNWITIQK 21 (377)
Q Consensus 2 ~la~~L~~~-G~eV~v~~~~~ 21 (377)
+||+.|+++ ||+||+++...
T Consensus 25 ~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 25 EFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp HHHHHHHHHHCCEEEEEECCS
T ss_pred HHHHHHHhCCCCEEEEEECCC
Confidence 689999998 99999998664
No 290
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=29.69 E-value=1.6e+02 Score=24.91 Aligned_cols=40 Identities=18% Similarity=0.065 Sum_probs=30.0
Q ss_pred CCHHHHHHh---cCEEEecCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 255 LTVAPYLAA---IDVLVQNSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 255 ~~~~~~~~~---adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
.++.+++.. .|+++..+. ...-.-.+..|+..|++|++-.
T Consensus 70 ~~~~~ll~~~~~vD~V~i~tp--~~~H~~~~~~al~aGkhVl~EK 112 (330)
T 4ew6_A 70 TTIEAMLDAEPSIDAVSLCMP--PQYRYEAAYKALVAGKHVFLEK 112 (330)
T ss_dssp SSHHHHHHHCTTCCEEEECSC--HHHHHHHHHHHHHTTCEEEECS
T ss_pred CCHHHHHhCCCCCCEEEEeCC--cHHHHHHHHHHHHcCCcEEEeC
Confidence 567788876 888888775 3444455778999999999765
No 291
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=29.43 E-value=1.7e+02 Score=21.85 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=32.3
Q ss_pred cHhhHHHhc-CceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc--chhHHHh---hhcccEEEEcCch
Q 017085 2 ELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--GQETINT---ALKADLIVLNTAV 67 (377)
Q Consensus 2 ~la~~L~~~-G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~Div~~~~~~ 67 (377)
.+++.|.+. |++|+++..+.. ....+...|..++... ....+.. ..+.|+|++..+.
T Consensus 53 ~~a~~L~~~~g~~V~vid~~~~---------~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 53 GAYDELRARYGKISLGIEIREE---------AAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH 115 (183)
T ss_dssp HHHHHHHHHHCSCEEEEESCHH---------HHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred HHHHHHHhccCCeEEEEECCHH---------HHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence 468889998 999998864421 1122233466554322 1122222 2468999987653
No 292
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=29.41 E-value=2.4e+02 Score=23.85 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=50.6
Q ss_pred HHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCC
Q 017085 165 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 244 (377)
Q Consensus 165 ~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~ 244 (377)
-.+++.+|- -+...+.++|-.....=...++.++. ..+++++.++++..-.. ...+.+.+++.|.
T Consensus 143 ~Ti~e~~g~-l~gl~va~vGD~~~~rva~Sl~~~~~-----------~~~g~~v~~~~P~~~~~---~~~~~~~~~~~g~ 207 (310)
T 3csu_A 143 FTIQETQGR-LDNLHVAMVGDLKYGRTVHSLTQALA-----------KFDGNRFYFIAPDALAM---PQYILDMLDEKGI 207 (310)
T ss_dssp HHHHHHHSC-SSSCEEEEESCTTTCHHHHHHHHHHH-----------TSSSCEEEEECCGGGCC---CHHHHHHHHHTTC
T ss_pred HHHHHHhCC-cCCcEEEEECCCCCCchHHHHHHHHH-----------hCCCCEEEEECCccccc---CHHHHHHHHHcCC
Confidence 456777763 34578889995432233333444433 22579999999842211 2334455555553
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
.+.+. +++.+.+..||++....
T Consensus 208 --~~~~~---~d~~eav~~aDvvyt~~ 229 (310)
T 3csu_A 208 --AWSLH---SSIEEVMAEVDILYMTR 229 (310)
T ss_dssp --CEEEC---SCGGGTTTTCSEEEECC
T ss_pred --eEEEE---cCHHHHhcCCCEEEECC
Confidence 34443 46677889999887654
No 293
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=29.33 E-value=1.9e+02 Score=22.09 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=58.3
Q ss_pred ccchhHHHHH-HHHHHHHHHhhhcccCCCeEEEEEecCCC----cccHHHHHHHHHHHhcCCCCcEEEecCcC--CH---
Q 017085 188 RGKGQDLFLH-SFYESLELIKEKKLEVPSVHAVIIGSDMN----AQTKFESELRNYVMQKKIQDRVHFVNKTL--TV--- 257 (377)
Q Consensus 188 ~~Kg~~~ll~-a~~~l~~~l~~~~~~~~~~~l~i~G~~~~----~~~~~~~~l~~~~~~~~~~~~v~~~g~~~--~~--- 257 (377)
...|+|.+.- ++. .|++ ++++++|.++=+... ..+.....+...++. .+.|..+.... .-
T Consensus 51 ga~G~D~~aae~vl----~lk~---~y~~i~L~~v~Pf~~~~~~w~~~~~~~y~~ll~~---aD~v~~l~~~~y~~~~~~ 120 (181)
T 2nx2_A 51 GQLGVELWAAEAAY----DLQE---EYPDLKVAVITPFYEQEKNWKEPNKEQYEAVLAQ---ADYEASLTHRPYESPLQF 120 (181)
T ss_dssp CCTTHHHHHHHHHH----TTTT---TCTTCEEEEEESSBCTTTTSCHHHHHHHHHHHHH---CSEEEESSSSBCCCHHHH
T ss_pred CCccHHHHHHHHHH----Hhcc---ccCCceEEEEecccchhhCCCHHHHHHHHHHHHh---CCeEEecccCCCCCHHHH
Confidence 4678888643 333 2332 568899988755221 222234445555454 35666665431 11
Q ss_pred ---H-HHHHhcCEEEecCCCCCCccchHHHHHH-Hc----CCcEEEeCCCCcccceec
Q 017085 258 ---A-PYLAAIDVLVQNSQAWGECFGRITIEAM-AF----QLPVLGTAAGGTTEIVVN 306 (377)
Q Consensus 258 ---~-~~~~~adv~l~ps~~~~e~~~~~~~Ea~-a~----g~PvI~s~~~~~~e~~~~ 306 (377)
. -++..||.++.-.....+|..--.++.+ .. |.||..-+..++.+++++
T Consensus 121 ~~rn~~mvd~sD~liavyDg~~~GgT~~~v~~A~~~~~~~~~pv~~I~~~~l~~~~~~ 178 (181)
T 2nx2_A 121 KQKNQFFIDKSDGLLLLYDPEKEGSPKYMLGTAEKRREQDGYPIYFITMDDLRVTVEE 178 (181)
T ss_dssp HHHHHHHHHHSSEEEEECCTTTCCTTHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
T ss_pred HHHHHHHHHHCCEEEEEEcCCCCCCHHHHHHHHHHhccccCCeEEEEcHHHHHHHHhc
Confidence 1 2357899777654311222222233333 33 799998877777776644
No 294
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=29.17 E-value=90 Score=26.74 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=41.4
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+-+.. ..++.+++++.+ .+... .++.+++.. .|+++..+. ...-.-.+.+|+..|++
T Consensus 26 ~~~~l~av~d~~--------~~~~~a~~~~~~-~~~~~---~~~~~ll~~~~~D~V~i~tp--~~~h~~~~~~al~aGk~ 91 (349)
T 3i23_A 26 ETLEVKTIFDLH--------VNEKAAAPFKEK-GVNFT---ADLNELLTDPEIELITICTP--AHTHYDLAKQAILAGKS 91 (349)
T ss_dssp TTEEEEEEECTT--------CCHHHHHHHHTT-TCEEE---SCTHHHHSCTTCCEEEECSC--GGGHHHHHHHHHHTTCE
T ss_pred CCeEEEEEECCC--------HHHHHHHhhCCC-CCeEE---CCHHHHhcCCCCCEEEEeCC--cHHHHHHHHHHHHcCCE
Confidence 788887555542 112233333332 23332 456677765 898888775 33334456789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 92 Vl~EK 96 (349)
T 3i23_A 92 VIVEK 96 (349)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99854
No 295
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=29.06 E-value=92 Score=23.00 Aligned_cols=33 Identities=0% Similarity=-0.059 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 017085 336 RRLTMGKRGYERVKEIFQEHHMAERIAVVLKEV 368 (377)
Q Consensus 336 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 368 (377)
..+.........+.+.++|+.+...+..+|.+.
T Consensus 47 ~~~~~~~k~~~~~~k~~s~~~l~~~~~~iY~~~ 79 (147)
T 3oao_A 47 VLERYQAKANAELDRAIGWDKIKPELIKLYTTN 79 (147)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 344455555555556667777777776666554
No 296
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=28.62 E-value=2.6e+02 Score=23.51 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=52.5
Q ss_pred HHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccH-HHHHHHHHHHhc
Q 017085 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK-FESELRNYVMQK 242 (377)
Q Consensus 164 ~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~-~~~~l~~~~~~~ 242 (377)
--.+++.+|- -+...+.++|-. .. .+...+..+..+ -++++.++|+..-..++ ..+.+++.+++.
T Consensus 136 l~Ti~e~~g~-l~gl~va~vGD~-~~----rva~Sl~~~~~~--------~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~ 201 (307)
T 2i6u_A 136 LQTIAERKGA-LRGLRLSYFGDG-AN----NMAHSLLLGGVT--------AGIHVTVAAPEGFLPDPSVRAAAERRAQDT 201 (307)
T ss_dssp HHHHHHHHSC-CTTCEEEEESCT-TS----HHHHHHHHHHHH--------TTCEEEEECCTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-cCCeEEEEECCC-Cc----CcHHHHHHHHHH--------CCCEEEEECCccccCCHHHHHHHHHHHHHc
Confidence 3556777763 345788999964 12 233333332222 36899999985322212 334455566666
Q ss_pred CCCCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 243 KIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 243 ~~~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
|. .+.+. +++.+.+..+|++....
T Consensus 202 G~--~~~~~---~d~~eav~~aDvvy~~~ 225 (307)
T 2i6u_A 202 GA--SVTVT---ADAHAAAAGADVLVTDT 225 (307)
T ss_dssp TC--CEEEE---SCHHHHHTTCSEEEECC
T ss_pred CC--eEEEE---ECHHHHhcCCCEEEecc
Confidence 63 35444 57888999999887644
No 297
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=28.62 E-value=46 Score=26.75 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
.....+++|+...-..+...++.+.+++.++| .+.|.+..+ .+...+|.+++||.
T Consensus 30 ~GtD~i~vGGs~gvt~~~~~~~v~~ik~~~~P-vvlfp~~~~---~v~~gaD~~l~psl 84 (228)
T 3vzx_A 30 SGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVP-CVLEVSAIE---AIVPGFDLYFIPSV 84 (228)
T ss_dssp SSCSEEEECCCSCCCHHHHHHHHHHHTTSSSC-EEEECSCGG---GCCSCCSEEEEEEE
T ss_pred cCCCEEEECCcCCCCHHHHHHHHHHhhccCCC-EEEeCCCHH---HccccCCEEEEeee
Confidence 56778889885433223344555555556665 566777643 34579999998876
No 298
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=27.98 E-value=2.8e+02 Score=23.59 Aligned_cols=89 Identities=13% Similarity=0.133 Sum_probs=52.2
Q ss_pred HHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCccc-HHHHHHHHHHHhc
Q 017085 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT-KFESELRNYVMQK 242 (377)
Q Consensus 164 ~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~-~~~~~l~~~~~~~ 242 (377)
--.+++.+|- -+...+.++|-. ++ .+...+..+..+ -++++.++|+..-..+ ...+.+++.+++.
T Consensus 155 l~Ti~e~~g~-l~gl~va~vGD~---~~--rva~Sl~~~~~~--------~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~ 220 (325)
T 1vlv_A 155 LMTIEENFGR-LKGVKVVFMGDT---RN--NVATSLMIACAK--------MGMNFVACGPEELKPRSDVFKRCQEIVKET 220 (325)
T ss_dssp HHHHHHHHSC-STTCEEEEESCT---TS--HHHHHHHHHHHH--------TTCEEEEESCGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-cCCcEEEEECCC---Cc--CcHHHHHHHHHH--------CCCEEEEECCccccCCHHHHHHHHHHHHHc
Confidence 3556777763 355788999952 11 233333333222 3689999998422111 1334455566666
Q ss_pred CCCCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 243 KIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 243 ~~~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
|. .+.+. +++.+.+..+|++....
T Consensus 221 G~--~v~~~---~d~~eav~~aDvvyt~~ 244 (325)
T 1vlv_A 221 DG--SVSFT---SNLEEALAGADVVYTDV 244 (325)
T ss_dssp CC--EEEEE---SCHHHHHTTCSEEEECC
T ss_pred CC--eEEEE---cCHHHHHccCCEEEecc
Confidence 63 34444 57888999999887654
No 299
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=27.86 E-value=41 Score=23.30 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=32.5
Q ss_pred EEEEecCCCcccHHHHHHHHHHHhcCCC-CcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 218 AVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 218 l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
++++|.|.....=....+++.+++.+++ ..+...+. .++...+..+|+++.+..
T Consensus 22 lvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~-~~~~~~~~~~DlIi~t~~ 76 (110)
T 3czc_A 22 LTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSV-GEAKGLASNYDIVVASNH 76 (110)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECH-HHHHHHGGGCSEEEEETT
T ss_pred EEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeH-HHHhhccCCCcEEEECCc
Confidence 3455665332211334788888888876 33444443 456666788998887554
No 300
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.78 E-value=2.3e+02 Score=23.35 Aligned_cols=55 Identities=15% Similarity=0.081 Sum_probs=30.2
Q ss_pred CCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhc
Q 017085 176 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 242 (377)
Q Consensus 176 ~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~ 242 (377)
...+|++++.-.. -.-..+.++++++++ .++.+.++|-|.... -.+.+++++...
T Consensus 107 ~~rIIlf~ds~~~-~~~~~l~~lak~lkk---------~gI~v~vIgFG~~~~--n~~kLe~l~~~~ 161 (268)
T 4b4t_W 107 HQRIVAFVCSPIS-DSRDELIRLAKTLKK---------NNVAVDIINFGEIEQ--NTELLDEFIAAV 161 (268)
T ss_dssp EEEEEEEECSCCS-SCHHHHHHHHHHHHH---------HTEEEEEEEESSCCS--SCCHHHHHHHHH
T ss_pred ceEEEEEECCCCC-CCHHHHHHHHHHHHH---------cCCEEEEEEeCCCcc--chHHHHHHHHHh
Confidence 3356666665322 244556666665544 578888887664322 124455555544
No 301
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=27.65 E-value=3e+02 Score=23.78 Aligned_cols=110 Identities=11% Similarity=0.065 Sum_probs=54.1
Q ss_pred CeEEEEecccccc-chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc-ccHHHHHHHHHHHhcCCCCcEEEecCc
Q 017085 177 DLLFAIINSVSRG-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDRVHFVNKT 254 (377)
Q Consensus 177 ~~~i~~~G~~~~~-Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~-~~~~~~~l~~~~~~~~~~~~v~~~g~~ 254 (377)
..++...|..... +++..+++.+..+.+ ...+-+++|+.....+ .....+.+.+.+.+.+. .+....-.
T Consensus 220 ~~i~p~Hg~~~~~~~~~~~~~~~~~~~~~-------~~~~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~--~v~~~~~~ 290 (402)
T 1e5d_A 220 EFICPDHGVIFRGADQCTFAVQKYVEYAE-------QKPTNKVVIFYDSMWHSTEKMARVLAESFRDEGC--TVKLMWCK 290 (402)
T ss_dssp SEEEESSSCBEESHHHHHHHHHHHHHHHH-------CCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTC--EEEEEETT
T ss_pred CEEecCCcceeecCCCHHHHHHHHHHHhc-------CCCCCcEEEEEECCChhHHHHHHHHHHHHHhCCC--eEEEEECC
Confidence 4444444444321 357777777655443 1123455555543222 11223444444544443 34443322
Q ss_pred ----CCHHHHHHhcCEEEecCCCCCCccchHHHH---HHH----cCCcEEEe
Q 017085 255 ----LTVAPYLAAIDVLVQNSQAWGECFGRITIE---AMA----FQLPVLGT 295 (377)
Q Consensus 255 ----~~~~~~~~~adv~l~ps~~~~e~~~~~~~E---a~a----~g~PvI~s 295 (377)
.++.+-+..+|++++.+-.|.++.+-.+.+ .+. .|++++..
T Consensus 291 ~~~~~~~~~~~~~~d~ii~gsp~~~~~~~~~~~~~l~~l~~~~l~~k~~~~f 342 (402)
T 1e5d_A 291 ACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKGLRPQNKIGGAF 342 (402)
T ss_dssp TSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHTCCCSCEEEEE
T ss_pred CCCHHHHHHHHHHCCEEEEECCccCCCchHHHHHHHHHhhhcccCCCEEEEE
Confidence 234444689999887664446666654433 332 36776644
No 302
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=27.27 E-value=2.8e+02 Score=23.42 Aligned_cols=88 Identities=7% Similarity=-0.015 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCccc-HHHHHHHHHHHhc
Q 017085 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT-KFESELRNYVMQK 242 (377)
Q Consensus 164 ~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~-~~~~~l~~~~~~~ 242 (377)
--.+++.+|- -+...+.++|-. ..=...++.++. + -++++.++|+..-..+ ...+.+++.+++.
T Consensus 143 l~Ti~e~~g~-l~gl~va~vGD~--~rva~Sl~~~~~----~--------~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~ 207 (315)
T 1pvv_A 143 YMTIWEKKGT-IKGVKVVYVGDG--NNVAHSLMIAGT----K--------LGADVVVATPEGYEPDEKVIKWAEQNAAES 207 (315)
T ss_dssp HHHHHHHHSC-CTTCEEEEESCC--CHHHHHHHHHHH----H--------TTCEEEEECCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-cCCcEEEEECCC--cchHHHHHHHHH----H--------CCCEEEEECCccccCCHHHHHHHHHHHHHc
Confidence 3556777763 345788999964 222222333332 2 3689999998432211 2334455556666
Q ss_pred CCCCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 243 KIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 243 ~~~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
|. .+.+. +++.+.+..+|++....
T Consensus 208 g~--~~~~~---~d~~eav~~aDvvy~~~ 231 (315)
T 1pvv_A 208 GG--SFELL---HDPVKAVKDADVIYTDV 231 (315)
T ss_dssp TC--EEEEE---SCHHHHTTTCSEEEECC
T ss_pred CC--eEEEE---eCHHHHhCCCCEEEEcc
Confidence 53 34444 57888999999987654
No 303
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=27.14 E-value=52 Score=23.08 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=45.8
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
.+..|+|.|.-.. -++++++++..+|- .+.+.+. ...|.+|.... .+..+-++-.|...|+|||
T Consensus 12 ~G~~~ViTG~l~~----~R~e~k~~ie~~Gg----kv~~sVs------kkT~~lV~g~~--~e~~gsKl~kA~~lgI~Iv 75 (113)
T 2cok_A 12 SNMKILTLGKLSR----NKDEVKAMIEKLGG----KLTGTAN------KASLCISTKKE--VEKMNKKMEEVKEANIRVV 75 (113)
T ss_dssp SSCEEEECSCCSS----CHHHHHHHHHHTTC----EEESCST------TCSEEECCHHH--HHHCCHHHHHHHHTTCCEE
T ss_pred CCCEEEEEecCCC----CHHHHHHHHHHCCC----EEcCccc------cCccEEEECCC--CCCCChHHHHHHHCCCcEE
Confidence 5778999998632 47888999998874 3455542 23455554421 2446789999999999999
Q ss_pred EeC
Q 017085 294 GTA 296 (377)
Q Consensus 294 ~s~ 296 (377)
.-+
T Consensus 76 sE~ 78 (113)
T 2cok_A 76 SED 78 (113)
T ss_dssp CTH
T ss_pred eHH
Confidence 654
No 304
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=27.10 E-value=1.6e+02 Score=23.32 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCHHHHH-HhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC
Q 017085 255 LTVAPYL-AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 255 ~~~~~~~-~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
+++.+++ ..+|+++..+. .....-.+.+++..|++||+...
T Consensus 41 ~~~~~l~~~~~DvVv~~~~--~~~~~~~~~~~l~~G~~vv~~~~ 82 (236)
T 2dc1_A 41 RGIDEFLQREMDVAVEAAS--QQAVKDYAEKILKAGIDLIVLST 82 (236)
T ss_dssp SSHHHHTTSCCSEEEECSC--HHHHHHHHHHHHHTTCEEEESCG
T ss_pred CCHHHHhcCCCCEEEECCC--HHHHHHHHHHHHHCCCcEEEECc
Confidence 3566666 57888887665 33333345678888888887654
No 305
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=27.01 E-value=1.4e+02 Score=26.37 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=35.4
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccc--hhHHHh--hhcccEEEEcCch
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--QETINT--ALKADLIVLNTAV 67 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~Div~~~~~~ 67 (377)
.+++.|.+.|++|+++-.+.. ....+...|+.++.... ...+.. ..+.|+|++..+.
T Consensus 18 ~va~~L~~~g~~vvvId~d~~---------~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~ 78 (413)
T 3l9w_A 18 ITGRLLLSSGVKMVVLDHDPD---------HIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD 78 (413)
T ss_dssp HHHHHHHHTTCCEEEEECCHH---------HHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSS
T ss_pred HHHHHHHHCCCCEEEEECCHH---------HHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCC
Confidence 478999999999999975531 12233345776665332 222222 3678999887654
No 306
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=27.00 E-value=1.3e+02 Score=19.40 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=36.5
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHH
Q 017085 190 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL 261 (377)
Q Consensus 190 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~ 261 (377)
.|....+++++ ....+++|+...-+. .....+..++++.++| +.+.+...++....
T Consensus 14 ~G~~~v~kai~------------~gkaklViiA~D~~~--~~~~~i~~lc~~~~Ip--~~~v~sk~eLG~a~ 69 (82)
T 3v7e_A 14 IGTKQTVKALK------------RGSVKEVVVAKDADP--ILTSSVVSLAEDQGIS--VSMVESMKKLGKAC 69 (82)
T ss_dssp ESHHHHHHHHT------------TTCEEEEEEETTSCH--HHHHHHHHHHHHHTCC--EEEESCHHHHHHHH
T ss_pred EcHHHHHHHHH------------cCCeeEEEEeCCCCH--HHHHHHHHHHHHcCCC--EEEECCHHHHHHHh
Confidence 35666666653 157899887765432 4678888999999886 56655445555443
No 307
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=26.75 E-value=3.6e+02 Score=24.38 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=59.9
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-CcEEEecC-------c----
Q 017085 187 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK-------T---- 254 (377)
Q Consensus 187 ~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~g~-------~---- 254 (377)
+...|.-.+ +++-+...++-.|.+..+.++++.|.| ..---+-+++...|++ .++.+... +
T Consensus 193 DD~qGTA~V--~lAgllnAlki~gk~l~d~riV~~GAG-----aAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~ 265 (487)
T 3nv9_A 193 DDQQGTASV--TLAGLLNALKLVKKDIHECRMVFIGAG-----SSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIK 265 (487)
T ss_dssp TTTHHHHHH--HHHHHHHHHHHHTCCGGGCCEEEECCS-----HHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHH
T ss_pred cccchHHHH--HHHHHHHHHHHhCCChhhcEEEEECCC-----HHHHHHHHHHHHcCCCcccEEEEeccccccCCcchhh
Confidence 345554433 222333344433335578999999998 4445566666677874 35555421 0
Q ss_pred --------------------CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 255 --------------------LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 255 --------------------~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
..+.+.+..+|+++-.|......|.--++++|+ ..|+|-.
T Consensus 266 ~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~~pg~ft~e~V~~Ma-~~PIIFa 325 (487)
T 3nv9_A 266 KDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVKAEWIKSMG-EKPIVFC 325 (487)
T ss_dssp HCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECCCSSCCCCCHHHHHTSC-SSCEEEE
T ss_pred hhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEecccCCCCCCHHHHHhhc-CCCEEEE
Confidence 135667778899998885102456667788885 5777754
No 308
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=25.88 E-value=17 Score=31.38 Aligned_cols=95 Identities=9% Similarity=0.095 Sum_probs=52.7
Q ss_pred HHHHHHhCCCCCCeEEEEeccc--cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhc
Q 017085 165 EHVRESLGVRNEDLLFAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 242 (377)
Q Consensus 165 ~~~r~~~~~~~~~~~i~~~G~~--~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~ 242 (377)
..+++ +|+ ..+.-++..|.+ ...++.+.+.+|++.+++ +.+++ .+.|.-. ...-+...+.+.
T Consensus 197 ~~~~~-~Gi-~PrVAlLs~~~~G~e~~~~~~~i~~A~~llk~-------~~~~~--~v~Gpl~-----~D~a~~~~~~~~ 260 (337)
T 1r5j_A 197 ETAKI-FDI-DPKIAMLSFSTKGSGKAPQVDKVREATEIATG-------LNPDL--ALDGELQ-----FDAAFVPETAAI 260 (337)
T ss_dssp HHHHH-TTC-CCCEEEECSCSTTSSCSHHHHHHHHHHHHHHH-------HCTTS--CEEEEEC-----HHHHHCHHHHHH
T ss_pred HHHHH-cCC-CCeEEEEecCccCCCCCCCcHHHHHHHHHHhc-------cCCCc--EEEecCc-----HHHhcCHHHHHh
Confidence 34455 898 666666666333 346777778888886654 22443 4678752 223332222221
Q ss_pred CCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHH
Q 017085 243 KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 287 (377)
Q Consensus 243 ~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a 287 (377)
..++ +. +-..+|++|+|... ....+.++++.+.
T Consensus 261 k~~~--------s~---~~G~aDvlv~p~~d-~GnI~~K~l~~~~ 293 (337)
T 1r5j_A 261 KAPD--------SA---VAGQANTFVFPDLQ-SGNIGYKIAQRLG 293 (337)
T ss_dssp HSCS--------CS---STTCCCEEECSSHH-HHHHHHHHHHHTT
T ss_pred hCCC--------Cc---cCCCCCEEEECChH-HHHHHHHHHHHhc
Confidence 1110 11 12468999999873 4455677777554
No 309
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=25.86 E-value=1.1e+02 Score=20.91 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=36.4
Q ss_pred eEEEEeccc--cccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC
Q 017085 178 LLFAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 253 (377)
Q Consensus 178 ~~i~~~G~~--~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~ 253 (377)
.+++=...+ -..-|+..|+.+.+.+.+ .+.++.++|.. ..+++..+..|+...+.+...
T Consensus 44 ~vvlDls~v~~iDssgl~~L~~~~~~~~~---------~g~~l~l~~~~--------~~v~~~l~~~gl~~~~~i~~~ 104 (117)
T 4hyl_A 44 KMILDLREVSYMSSAGLRVLLSLYRHTSN---------QQGALVLVGVS--------EEIRDTMEITGFWNFFTACAS 104 (117)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHHHHHHHH---------TTCEEEEECCC--------HHHHHHHHHHTCGGGCEEESC
T ss_pred eEEEECCCCcEEcHHHHHHHHHHHHHHHH---------cCCEEEEEeCC--------HHHHHHHHHhCccceeeecCC
Confidence 444444443 235678888887776644 57889999886 345555566676655555443
No 310
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=25.79 E-value=3.2e+02 Score=23.45 Aligned_cols=87 Identities=6% Similarity=0.005 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCCCCeEEEEeccccccch-hHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc-ccHHHHHHHHHHHh
Q 017085 164 REHVRESLGVRNEDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVMQ 241 (377)
Q Consensus 164 ~~~~r~~~~~~~~~~~i~~~G~~~~~Kg-~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~-~~~~~~~l~~~~~~ 241 (377)
--.+++.+|- -+...|.++|-. .+ ...++.++. + -++++.++++..-. .+...+.+++.+++
T Consensus 167 l~TI~E~~G~-l~glkva~vGD~---~nva~Sl~~~~~----~--------~G~~v~~~~P~~~~~~~~~~~~~~~~a~~ 230 (340)
T 4ep1_A 167 LMTIYEETNT-FKGIKLAYVGDG---NNVCHSLLLASA----K--------VGMHMTVATPVGYRPNEEIVKKALAIAKE 230 (340)
T ss_dssp HHHHHHHHSC-CTTCEEEEESCC---CHHHHHHHHHHH----H--------HTCEEEEECCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCCCEEEEECCC---chhHHHHHHHHH----H--------cCCEEEEECCcccCCCHHHHHHHHHHHHH
Confidence 3457777773 345788899964 22 223333333 2 25789999974322 12234455555666
Q ss_pred cCCCCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 242 KKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 242 ~~~~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
.|. .+.+. .++.+.+..||++....
T Consensus 231 ~G~--~v~~~---~d~~eav~~aDVvyt~~ 255 (340)
T 4ep1_A 231 TGA--EIEIL---HNPELAVNEADFIYTDV 255 (340)
T ss_dssp HCC--CEEEE---SCHHHHHTTCSEEEECC
T ss_pred cCC--eEEEE---CCHHHHhCCCCEEEecC
Confidence 663 35443 46888999999887654
No 311
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=25.48 E-value=99 Score=26.23 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=36.2
Q ss_pred hhHHHhcCceEEEEEecCCCcchhH----hhhhhhhhcccCceEEEccc-----hhHHHhhhcccEEEEcC
Q 017085 4 AFLLRGVGTKVNWITIQKPSEEDEV----IYSLEHKMWDRGVQVISAKG-----QETINTALKADLIVLNT 65 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Div~~~~ 65 (377)
.++|.+.||+|..+.+..+.+.... ...........|++++.... ....++..+||++++-.
T Consensus 19 L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~ 89 (314)
T 1fmt_A 19 LDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVA 89 (314)
T ss_dssp HHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHHHHHHHhcCCCEEEEee
Confidence 3567778999986665533221110 01233444567888866433 33456778999999864
No 312
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=25.41 E-value=1e+02 Score=23.50 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=32.6
Q ss_pred hhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCch
Q 017085 4 AFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAV 67 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~ 67 (377)
...|++.|++|++++...+. .....|..+.+...+..+ ...++|+|++.+..
T Consensus 28 ~~~l~~ag~~V~~~s~~~~~-----------v~~~~G~~v~~d~~l~~v-~~~~yD~liiPGG~ 79 (177)
T 4hcj_A 28 KKIFESAGYKTKVSSTFIGT-----------AQGKLGGMTNIDLLFSEV-DAVEFDAVVFVGGI 79 (177)
T ss_dssp HHHHHHTTCEEEEEESSSEE-----------EEETTSCEEEECEEGGGC-CGGGCSEEEECCSG
T ss_pred HHHHHHCCCEEEEEECCCCe-----------EeeCCCCEEecCccHHHC-CHhHCCEEEECCCc
Confidence 45788999999999876532 111346666554433322 24579999997653
No 313
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=25.39 E-value=3.1e+02 Score=23.14 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcC
Q 017085 164 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 243 (377)
Q Consensus 164 ~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 243 (377)
--.+++.+|- -+...+.++|-.....=...++.++.. -++++.++++..-.. ...+.+.+++.|
T Consensus 143 l~Ti~e~~g~-l~gl~va~vGD~~~~rva~Sl~~~~~~------------~G~~v~~~~P~~~~~---~~~~~~~~~~~g 206 (308)
T 1ml4_A 143 LYTIKKEFGR-IDGLKIGLLGDLKYGRTVHSLAEALTF------------YDVELYLISPELLRM---PRHIVEELREKG 206 (308)
T ss_dssp HHHHHHHSSC-SSSEEEEEESCTTTCHHHHHHHHHGGG------------SCEEEEEECCGGGCC---CHHHHHHHHHTT
T ss_pred HHHHHHHhCC-CCCeEEEEeCCCCcCchHHHHHHHHHH------------CCCEEEEECCccccC---CHHHHHHHHHcC
Confidence 3456777763 356889999955322223333333321 368999999842111 233555556555
Q ss_pred CCCcEEEecCcCCHHHHHHhcCEEEecCC
Q 017085 244 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 244 ~~~~v~~~g~~~~~~~~~~~adv~l~ps~ 272 (377)
. .+.+. .++.+.+..||++....-
T Consensus 207 ~--~~~~~---~d~~eav~~aDvvyt~~~ 230 (308)
T 1ml4_A 207 M--KVVET---TTLEDVIGKLDVLYVTRI 230 (308)
T ss_dssp C--CEEEE---SCTHHHHTTCSEEEECCC
T ss_pred C--eEEEE---cCHHHHhcCCCEEEECCc
Confidence 3 24443 467788999998876543
No 314
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=25.27 E-value=3e+02 Score=23.08 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=37.6
Q ss_pred cCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecC-cCCHHHHHHhcCEEEecCC
Q 017085 212 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-TLTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 212 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~-~~~~~~~~~~adv~l~ps~ 272 (377)
...+-+.+++|.+.. .-..+..+....+ -.|+.... ..++.++++.||+++...-
T Consensus 162 ~l~gk~vvVIG~s~i----VG~p~A~lL~~~g--AtVtv~hs~t~~L~~~~~~ADIVI~Avg 217 (301)
T 1a4i_A 162 PIAGRHAVVVGRSKI----VGAPMHDLLLWNN--ATVTTCHSKTAHLDEEVNKGDILVVATG 217 (301)
T ss_dssp CCTTCEEEEECCCTT----THHHHHHHHHHTT--CEEEEECTTCSSHHHHHTTCSEEEECCC
T ss_pred CCCCCEEEEECCCch----HHHHHHHHHHhCC--CeEEEEECCcccHHHHhccCCEEEECCC
Confidence 446789999999842 2233444444444 35777654 4899999999999997554
No 315
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=25.12 E-value=1.1e+02 Score=24.71 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=35.0
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCC
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 273 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~ 273 (377)
.....+++|....-..+...++.+.+++..+| .+.|.+..+.+ ...+|.+++||.-
T Consensus 35 ~GtDaI~vGgs~gvt~~~~~~~v~~ik~~~~P-iil~p~~~~~~---~~gaD~il~psll 90 (235)
T 3w01_A 35 SQTDAIMIGGTDDVTEDNVIHLMSKIRRYPLP-LVLEISNIESV---MPGFDFYFVPTVL 90 (235)
T ss_dssp SSCSEEEECCSSCCCHHHHHHHHHHHTTSCSC-EEEECCCSTTC---CTTCSEEEEEEET
T ss_pred cCCCEEEECCcCCcCHHHHHHHHHHhcCcCCC-EEEecCCHHHh---hcCCCEEEEcccc
Confidence 56777888885433223345555556655554 56666654443 5699999988763
No 316
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox binding protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Probab=25.10 E-value=83 Score=27.17 Aligned_cols=83 Identities=13% Similarity=0.181 Sum_probs=54.7
Q ss_pred CCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc----CCHHHHHH---hcCEEEecCCCCCCccchHHHHH
Q 017085 213 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLA---AIDVLVQNSQAWGECFGRITIEA 285 (377)
Q Consensus 213 ~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~----~~~~~~~~---~adv~l~ps~~~~e~~~~~~~Ea 285 (377)
+|+-++++.|-|.+...+........+.+.++. |+.++-.. .-+..++. ..|-|+.|++- .--.|....|.
T Consensus 137 nP~k~VVFfaiGFETTaP~tA~~i~~a~~~~l~-Nfsvl~~h~l~pPa~~all~~~~~idgfi~PGHV-stIiG~~~y~~ 214 (372)
T 2z1d_A 137 NPDKTVVHFSPGFETTTAPAAGMLNVAAQEELE-NFKIYSVHRLTPPAVEVLLKQGTVFQGLIAPGHV-STIIGVKGWEY 214 (372)
T ss_dssp CTTSEEEEEEEECHHHHHHHHHHHHHHHHHTCS-SEEEEEEEECHHHHHHHHHHTSCCCSEEEEEHHH-HHHHTTHHHHH
T ss_pred CCCCeEEEEeeChhhccHHHHHHHHHHHHcCCC-CEEEEEeccccHHHHHHHHcCCCcCcEEEecCee-eEEeccchhHH
Confidence 378888888877655444455555557777775 66666542 34555555 36889998762 33456667776
Q ss_pred H--HcCCcEEEeCC
Q 017085 286 M--AFQLPVLGTAA 297 (377)
Q Consensus 286 ~--a~g~PvI~s~~ 297 (377)
+ -+|+|+|++..
T Consensus 215 l~~~y~~P~VVaGF 228 (372)
T 2z1d_A 215 LTEKYGIPQVVAGF 228 (372)
T ss_dssp HHHHHCCCEEEECS
T ss_pred HHHHcCCCEEEcCC
Confidence 6 56899999864
No 317
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=25.08 E-value=3.5e+02 Score=23.65 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=28.2
Q ss_pred CHHHHHHhcCEEEecCCCCC----CccchHHHHHHHcCCcEEE--eCCCCccc
Q 017085 256 TVAPYLAAIDVLVQNSQAWG----ECFGRITIEAMAFQLPVLG--TAAGGTTE 302 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~----e~~~~~~~Ea~a~g~PvI~--s~~~~~~e 302 (377)
++.+.++.||+++....... .-+.-..++.|.-|.-+|- .+.||.-|
T Consensus 258 ~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e 310 (381)
T 3p2y_A 258 ALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE 310 (381)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred HHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence 56788999999986432001 1133456677776766653 35666655
No 318
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=24.94 E-value=47 Score=24.55 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=16.0
Q ss_pred cHhhHHHhcCceEEEEEec
Q 017085 2 ELAFLLRGVGTKVNWITIQ 20 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~ 20 (377)
.++..|+++||+|+|....
T Consensus 27 Yl~~~Lk~~G~~v~VA~np 45 (157)
T 1kjn_A 27 YTSHKLKKKGFRVTVTANP 45 (157)
T ss_dssp HHHHHHHHTTCEEEEEECH
T ss_pred HHHHHHHhcCCeeEEecCH
Confidence 4678899999999999854
No 319
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=24.81 E-value=1.4e+02 Score=24.44 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcC
Q 017085 197 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAID 265 (377)
Q Consensus 197 ~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 265 (377)
..|+.++++. | +++.++++|+|. .. ++.++.+++| +.-+....++..+..+-|
T Consensus 218 sCFerI~~RF---G---~k~~yvvIGDG~-----eE---e~AAk~~n~P--FwrI~~h~Dl~~l~~al~ 270 (274)
T 3geb_A 218 SCFERIMQRF---G---RKAVYVVIGDGV-----EE---EQGAKKHNMP--FWRISCHADLEALRHALE 270 (274)
T ss_dssp HHHHHHHHHH---C---TTSEEEEEESSH-----HH---HHHHHHTTCC--EEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---C---CCceEEEECCCH-----HH---HHHHHHcCCC--eEEeecCccHHHHHHhhc
Confidence 4455555544 2 789999999992 22 3445667665 333333356666655443
No 320
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=24.77 E-value=89 Score=27.33 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=48.1
Q ss_pred CeEEEEEec-CCCcccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 215 SVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 215 ~~~l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
+.-=+|+|. +.-......+.+++++++.|....+..+|.. +.+..+ ..|++|+.+. . -+++.++-.+-+|
T Consensus 265 ~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF--~iD~fV~vaC--P---rlsidd~~~F~KP 337 (378)
T 3lzd_A 265 KKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGF--PFEAYVVVAC--P---RVPLDDYGAWRKP 337 (378)
T ss_dssp CEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTS--CCSEEEECSC--T---HHHHSCCSCCSSC
T ss_pred CEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC--CCCEEEEecC--C---CccccchhhCCCc
Confidence 333356665 3333345678889999999887667777865 445444 4999998776 2 2344455567777
Q ss_pred EEEe
Q 017085 292 VLGT 295 (377)
Q Consensus 292 vI~s 295 (377)
||++
T Consensus 338 vLTP 341 (378)
T 3lzd_A 338 VLTP 341 (378)
T ss_dssp EECH
T ss_pred ccCH
Confidence 7765
No 321
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=24.72 E-value=2.5e+02 Score=23.74 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=46.7
Q ss_pred CCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHHcCCc
Q 017085 214 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLP 291 (377)
Q Consensus 214 ~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a~g~P 291 (377)
++++++-+.+..+.. ..+.+.+..+++++... . ..++.++++. .|+++..+. ...-.-.+.+|+..|++
T Consensus 23 ~~~~lvav~d~~~~~--~~~~~~~~~~~~~~~~~--~---~~~~~~ll~~~~vD~V~I~tp--~~~H~~~~~~al~aGkh 93 (337)
T 3ip3_A 23 EECSITGIAPGVPEE--DLSKLEKAISEMNIKPK--K---YNNWWEMLEKEKPDILVINTV--FSLNGKILLEALERKIH 93 (337)
T ss_dssp TTEEEEEEECSSTTC--CCHHHHHHHHTTTCCCE--E---CSSHHHHHHHHCCSEEEECSS--HHHHHHHHHHHHHTTCE
T ss_pred CCcEEEEEecCCchh--hHHHHHHHHHHcCCCCc--c---cCCHHHHhcCCCCCEEEEeCC--cchHHHHHHHHHHCCCc
Confidence 788888666543210 12455566666665321 1 1577788875 788887765 33333457789999999
Q ss_pred EEEeC
Q 017085 292 VLGTA 296 (377)
Q Consensus 292 vI~s~ 296 (377)
|++-.
T Consensus 94 Vl~EK 98 (337)
T 3ip3_A 94 AFVEK 98 (337)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 99764
No 322
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=24.48 E-value=3.3e+02 Score=23.24 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=52.2
Q ss_pred HHHHHHH-hCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCccc-HHHHHHHHHHHh
Q 017085 164 REHVRES-LGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT-KFESELRNYVMQ 241 (377)
Q Consensus 164 ~~~~r~~-~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~-~~~~~l~~~~~~ 241 (377)
--.+++. +|-+-+...+.++|-. ...=...++.++. + -++.+.++++..-..+ ...+.+++.+++
T Consensus 141 l~Ti~e~~~g~~l~gl~ia~vGD~-~~~va~Sl~~~~~----~--------~G~~v~~~~P~~~~p~~~~~~~~~~~a~~ 207 (333)
T 1duv_G 141 LLTMQEHLPGKAFNEMTLVYAGDA-RNNMGNSMLEAAA----L--------TGLDLRLVAPQACWPEAALVTECRALAQQ 207 (333)
T ss_dssp HHHHHHHSTTCCGGGCEEEEESCT-TSHHHHHHHHHHH----H--------HCCEEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcEEEEECCC-ccchHHHHHHHHH----H--------cCCEEEEECCcccCCCHHHHHHHHHHHHH
Confidence 4556777 6622345789999964 1222223333333 2 2578999998422111 233445556666
Q ss_pred cCCCCcEEEecCcCCHHHHHHhcCEEEecC
Q 017085 242 KKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 271 (377)
Q Consensus 242 ~~~~~~v~~~g~~~~~~~~~~~adv~l~ps 271 (377)
.|. .+.+. +++.+.+..||++....
T Consensus 208 ~G~--~v~~~---~d~~eav~~aDvvytd~ 232 (333)
T 1duv_G 208 NGG--NITLT---EDVAKGVEGADFIYTDV 232 (333)
T ss_dssp TTC--EEEEE---SCHHHHHTTCSEEEECC
T ss_pred cCC--eEEEE---ECHHHHhCCCCEEEeCC
Confidence 653 35544 57888999999887644
No 323
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=24.29 E-value=1.5e+02 Score=20.78 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEec-CCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh
Q 017085 190 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA 263 (377)
Q Consensus 190 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~-~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (377)
.|.....+++++ ...+++|+.. .++. .....+..++++.+++ +.+.+...++......
T Consensus 32 ~G~~~v~kal~~------------gka~lViiA~D~~~~--~~~~~l~~lc~~~~Vp--~~~~~sk~eLG~a~G~ 90 (120)
T 1vq8_F 32 KGTNETTKSIER------------GSAELVFVAEDVQPE--EIVMHIPELADEKGVP--FIFVEQQDDLGHAAGL 90 (120)
T ss_dssp ESHHHHHHHHHH------------TCCSEEEEESCCSSG--GGTTTHHHHHHTTCCC--EEEESCHHHHHHHTTC
T ss_pred ECHHHHHHHHHc------------CCceEEEEeCCCChH--HHHHHHHHHHHhcCCC--EEEECCHHHHHHHhCC
Confidence 467777777652 4567776654 4331 2467788888888876 6666665666665544
No 324
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=24.29 E-value=2.2e+02 Score=22.72 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=16.1
Q ss_pred cHhhHHHhcCceEEEEEec
Q 017085 2 ELAFLLRGVGTKVNWITIQ 20 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~ 20 (377)
.+|++|.++|++|++++..
T Consensus 39 aiA~~~~~~Ga~V~l~~~~ 57 (226)
T 1u7z_A 39 AIAAAAARRGANVTLVSGP 57 (226)
T ss_dssp HHHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 4789999999999998644
No 325
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.26 E-value=3.1e+02 Score=22.89 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=53.3
Q ss_pred ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCC-cEEEecCc--CCHHHHHHhc
Q 017085 188 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT--LTVAPYLAAI 264 (377)
Q Consensus 188 ~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~g~~--~~~~~~~~~a 264 (377)
-.|-...|..|+.-+. ... .+-+++++|... ....-+.+.+...|... +-+|+|.. +-...-+..=
T Consensus 51 L~kT~~~L~~A~~~i~-~i~------~~~~ILfVgTk~----~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~P 119 (295)
T 2zkq_b 51 LKRTWEKLLLAARAIV-AIE------NPADVSVISSRN----TGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREP 119 (295)
T ss_dssp HHHHHHHHHHHHHHHH-HSS------CGGGEEEEECSH----HHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCC
T ss_pred HHHHHHHHHHHHHHHH-HHh------CCCeEEEEeCcH----HHHHHHHHHHHHhCCceecceEecccccCcccccccCC
Confidence 3455556666665543 222 234567788752 22344555566555321 11244421 1111223456
Q ss_pred CEEEecCCCCCCccchHHHHHHHcCCcEEEe-CCCCcccce
Q 017085 265 DVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIV 304 (377)
Q Consensus 265 dv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s-~~~~~~e~~ 304 (377)
|++++... ..-...+.||...|+|+|+- |.....+.+
T Consensus 120 dlliV~Dp---~~e~~AI~EA~~lgIPvIalvDTn~dp~~V 157 (295)
T 2zkq_b 120 RLLVVTDP---RADHQPLTEASYVNLPTIALCNTDSPLRYV 157 (295)
T ss_dssp SEEEESCT---TTTHHHHHHHHHHTCCEEEEECTTCCCTTC
T ss_pred CeEEEeCC---CcchhHHHHHHHhCCCEEEEecCCCCcccC
Confidence 77665432 12256789999999999976 444444443
No 326
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=24.21 E-value=1.7e+02 Score=23.04 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=33.9
Q ss_pred HhhHHHhc--CceEEEEEecCCCcchhHhhhhhhhhcccCceEEEcc------------chhHHHhhhcccEEEEcC
Q 017085 3 LAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------GQETINTALKADLIVLNT 65 (377)
Q Consensus 3 la~~L~~~--G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Div~~~~ 65 (377)
+.++|.+. +++|..+.++.+.. .........|++++... .....++..+||+|++-.
T Consensus 20 ~l~~l~~~~l~~~I~~Vit~~~~~------~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~ 90 (212)
T 3av3_A 20 IVDAAKRGDLPARVALLVCDRPGA------KVIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAG 90 (212)
T ss_dssp HHHHHHTTCCCEEEEEEEESSTTC------HHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHhCCCCCeEEEEEeCCCCc------HHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEch
Confidence 34556555 68987776553321 12233456788876422 223455678999999875
No 327
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=24.20 E-value=3.4e+02 Score=23.34 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=63.5
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH---cC
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA---FQ 289 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a---~g 289 (377)
..+++|+-+.. .....+....++.|. .|.......+..+.+.. .|++++=.. -.+.-|..+++.+. ..
T Consensus 5 ~~~iLivdD~~----~~~~~l~~~L~~~g~--~v~~a~~~~~al~~~~~~~~dlvllD~~-mp~~~G~~~~~~lr~~~~~ 77 (394)
T 3eq2_A 5 SATLLIIDDDE----VVRESLAAYLEDSNF--KVLQALNGLQGLQIFESEQPDLVICDLR-MPQIDGLELIRRIRQTASE 77 (394)
T ss_dssp EEEEEEECSCH----HHHHHHHHHHHHTTE--EEEECSSHHHHHHHHHHSCCSEEEECCC-SSSSCTHHHHHHHHHTTCC
T ss_pred CCEEEEEeCCH----HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHhhCCCCEEEEcCC-CCCCCHHHHHHHHHhhCCC
Confidence 46677776652 345666666666554 23332222344444433 477775332 03335667776664 35
Q ss_pred CcEEEeCCCC----cccceecCcceeeecCC-CCChhHHHHHHHHHhhCHH
Q 017085 290 LPVLGTAAGG----TTEIVVNGTTGLLHPVG-KEGITPLAKNIVKLATHVE 335 (377)
Q Consensus 290 ~PvI~s~~~~----~~e~~~~~~~g~~~~~~-~~~~~~la~~i~~l~~~~~ 335 (377)
+|+|.-.... ..+.+..|..+++..|- + .+.+..+|.+++....
T Consensus 78 ~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~--~~~l~~~i~~~~~~~~ 126 (394)
T 3eq2_A 78 TPIIVLSGAGVMSDAVEALRLGAADYLIKPLED--LAVLEHSVRRALDRAY 126 (394)
T ss_dssp CCEEEC---CHHHHHHHHHHHTCSEECCSSCSC--THHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCHHHHHHHHhcChhhEEECCCCh--HHHHHHHHHHHHhhhh
Confidence 7888653222 22334457788998886 4 7889999988876443
No 328
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=24.15 E-value=1.9e+02 Score=26.45 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=33.4
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcC
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNT 65 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~ 65 (377)
+|+.|.++|++|++.-....++ ....+...|+.+..-.....+ ..++|+|+...
T Consensus 35 lA~~l~~~G~~V~~sD~~~~~~-------~~~~L~~~gi~~~~G~~~~~~--~~~~d~vV~Sp 88 (524)
T 3hn7_A 35 LALLARALGHTVTGSDANIYPP-------MSTQLEQAGVTIEEGYLIAHL--QPAPDLVVVGN 88 (524)
T ss_dssp HHHHHHHTTCEEEEEESCCCTT-------HHHHHHHTTCEEEESCCGGGG--CSCCSEEEECT
T ss_pred HHHHHHhCCCEEEEECCCCCcH-------HHHHHHHCCCEEECCCCHHHc--CCCCCEEEECC
Confidence 6888999999999875433211 223455678887653322211 23589998875
No 329
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=24.10 E-value=2e+02 Score=20.69 Aligned_cols=67 Identities=18% Similarity=0.070 Sum_probs=41.7
Q ss_pred HHHHHHhCCCCCCe-EEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcC
Q 017085 165 EHVRESLGVRNEDL-LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 243 (377)
Q Consensus 165 ~~~r~~~~~~~~~~-~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~ 243 (377)
++-|..+|-=.++. +-+..+.+...+-...+.+++. ++++.++.|-|.-+. .......+++++.+
T Consensus 24 DEqr~yLGtfrERV~lalt~~q~~~~~~~~~~~~~l~-----------~~~~~~l~ing~l~~---~~~~~YiklA~~~~ 89 (133)
T 2ohw_A 24 DERHLFLGSLRERVVLALTKGQVLRSKPYKEAEHELK-----------NSHNVTLLINGELQY---QSYSSYIQMASRYG 89 (133)
T ss_dssp HHHHHTTTCCGGGEEEEEEHHHHTSSSCCHHHHHHHH-----------TCSSEEEEEETTSCH---HHHHHHHHHHHHTT
T ss_pred HHHHHhccchhhhhheeeeHHHHhchhHHHHHHHHHh-----------hCCCcEEEEcCCCCH---HHHHHHHHHHHHcC
Confidence 44566666544443 3333455555555555555433 458899999998643 46677788888888
Q ss_pred CC
Q 017085 244 IQ 245 (377)
Q Consensus 244 ~~ 245 (377)
++
T Consensus 90 i~ 91 (133)
T 2ohw_A 90 VP 91 (133)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 330
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=24.07 E-value=2.4e+02 Score=21.54 Aligned_cols=11 Identities=0% Similarity=0.096 Sum_probs=6.4
Q ss_pred CCeEEEEEecC
Q 017085 214 PSVHAVIIGSD 224 (377)
Q Consensus 214 ~~~~l~i~G~~ 224 (377)
-++.+.+++..
T Consensus 50 I~~e~~V~SAH 60 (181)
T 4b4k_A 50 IPYEKKVVSAH 60 (181)
T ss_dssp CCEEEEECCTT
T ss_pred CCeeEEEEccc
Confidence 34666666664
No 331
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=24.06 E-value=1.1e+02 Score=26.19 Aligned_cols=60 Identities=23% Similarity=0.118 Sum_probs=35.2
Q ss_pred hhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccc----------hhHHHhhhcccEEEEcC
Q 017085 4 AFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------QETINTALKADLIVLNT 65 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Div~~~~ 65 (377)
.++|.+.||+|..+.+..+.+.. ...........|++++.... ....++..+||++++-.
T Consensus 38 L~~L~~~~~~i~~Vvt~pd~~~~--~~~v~~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~ 107 (329)
T 2bw0_A 38 YCHLRKEGHEVVGVFTVPDKDGK--ADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPF 107 (329)
T ss_dssp HHHHHHTTCEEEEEEECCCCSSC--CCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSEEEESS
T ss_pred HHHHHHCCCeEEEEEeCCCcCCC--CCHHHHHHHHcCCCEEecCcccccccccHHHHHHHHhcCCCEEEEee
Confidence 46777889998876653322111 00122344556887765432 23445678999999864
No 332
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=24.03 E-value=2.4e+02 Score=21.38 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCc---CCHHHHHHh-----cCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 230 KFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAA-----IDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~v~~~g~~---~~~~~~~~~-----adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
+..++....++++|++..+.+.+.. +++.++.+. +++++.-.- . .-.+.-+=|...-+|||+.
T Consensus 25 ~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG--~-aa~LpgvvA~~t~~PVIgV 95 (170)
T 1xmp_A 25 ETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAG--G-AAHLPGMVAAKTNLPVIGV 95 (170)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEE--S-SCCHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECC--c-hhhhHHHHHhccCCCEEEe
Confidence 3455555555666666555555532 444455443 455553221 1 1133333344555666654
No 333
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=23.84 E-value=1.9e+02 Score=20.11 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEe-cCcCCHHHHHHh
Q 017085 190 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV-NKTLTVAPYLAA 263 (377)
Q Consensus 190 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~-g~~~~~~~~~~~ 263 (377)
.|....++++++ ...+++|+....+. ...+.+..++...+++ +++. +...++......
T Consensus 29 ~G~~~t~kai~~------------gkakLVilA~D~~~--~~~~~i~~~c~~~~ip--v~~~~~s~~eLG~A~Gk 87 (112)
T 3iz5_f 29 LGYKTVLKTLRS------------SLGKLIILANNCPP--LRKSEIETYAMLAKIS--VHHFHGNNVDLGTACGK 87 (112)
T ss_dssp ESHHHHHHHHHT------------TCCSEEEECSCCCH--HHHHHHHHHHHHTTCC--EECCCCTTCTHHHHHCT
T ss_pred ECHHHHHHHHHc------------CCceEEEEeCCCCH--HHHHHHHHHHHHcCCc--EEEeCCCHHHHHHHhCC
Confidence 456777776652 56788877765432 4677888888888875 6666 666777766644
No 334
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=23.81 E-value=4e+02 Score=24.42 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=48.0
Q ss_pred CeEEEEEecCCCc--ccHHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHH--Hc
Q 017085 215 SVHAVIIGSDMNA--QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM--AF 288 (377)
Q Consensus 215 ~~~l~i~G~~~~~--~~~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~--a~ 288 (377)
+-++.|+|.-... .+....+++.+.+++|++.++.+.|.. +++.. +..|.+-+..+. ..+..+.+.| -+
T Consensus 153 ~~~VNIlG~~~~g~~~~gD~~eikrlL~~~Gi~v~~~~pgg~t~~ei~~-~~~A~~niv~~~----~~g~~~A~~Le~r~ 227 (525)
T 3aek_B 153 EVTCNLLGATALGFRHRDDVAEVTKLLATMGIKVNVCAPLGASPDDLRK-LGQAHFNVLMYP----ETGESAARHLERAC 227 (525)
T ss_dssp SCEEEEEEECTTCTTHHHHHHHHHHHHHTTTCEEEEEEETTCCHHHHHT-GGGSSEEEECCH----HHHHHHHHHHHHHS
T ss_pred CCceEEEecCCCCCCChhhHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-hccCCEEEEECh----hhHHHHHHHHHHHc
Confidence 4578999875321 113457899999999998666677653 44433 345555554332 1356677777 46
Q ss_pred CCcEEEe
Q 017085 289 QLPVLGT 295 (377)
Q Consensus 289 g~PvI~s 295 (377)
|+|.+..
T Consensus 228 GiP~i~~ 234 (525)
T 3aek_B 228 KQPFTKI 234 (525)
T ss_dssp CCCBCCC
T ss_pred CCCceec
Confidence 8888864
No 335
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=23.62 E-value=1.3e+02 Score=25.68 Aligned_cols=40 Identities=10% Similarity=0.009 Sum_probs=25.6
Q ss_pred CHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEEeCC
Q 017085 256 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLGTAA 297 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s~~ 297 (377)
+..+++..+|+++..+- .....-..-.++..|++||.+..
T Consensus 71 ~~~~~~~~vDvV~~atp--~~~~~~~a~~~l~aG~~VId~sp 110 (337)
T 1cf2_P 71 TVDDMLDEADIVIDCTP--EGIGAKNLKMYKEKGIKAIFQGG 110 (337)
T ss_dssp EHHHHHHTCSEEEECCS--TTHHHHHHHHHHHHTCCEEECTT
T ss_pred CHHHHhcCCCEEEECCC--chhhHHHHHHHHHcCCEEEEecC
Confidence 45566788999887654 22212233467788999887753
No 336
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=23.52 E-value=2.8e+02 Score=22.02 Aligned_cols=35 Identities=6% Similarity=0.024 Sum_probs=23.3
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCC-CCcEEEecCc
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNKT 254 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~-~~~v~~~g~~ 254 (377)
+...+++.+. .....+.+.+++.|+ ++.+.+.|+-
T Consensus 180 ~~~ai~~~~d-----~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 180 LPDALVTTSY-----VLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp CCSEEEESSH-----HHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred CCcEEEEeCc-----hHHHHHHHHHHHcCCCccceEEEEeC
Confidence 5666777664 344566677788884 6678888864
No 337
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=23.29 E-value=1.6e+02 Score=22.78 Aligned_cols=27 Identities=11% Similarity=-0.093 Sum_probs=16.7
Q ss_pred CHHHHHHhcCEEEecCCCCCCccchHH
Q 017085 256 TVAPYLAAIDVLVQNSQAWGECFGRIT 282 (377)
Q Consensus 256 ~~~~~~~~adv~l~ps~~~~e~~~~~~ 282 (377)
++.+-+..+|.+++.|--|+.+.|-.+
T Consensus 71 ~~~~~l~~aD~ii~gsP~y~~~~~~~l 97 (211)
T 1ydg_A 71 ATPADLEWAEAIVFSSPTRFGGATSQM 97 (211)
T ss_dssp CCHHHHHHCSEEEEEEEEETTEECHHH
T ss_pred HHHHHHHHCCEEEEEcCccccCccHHH
Confidence 456778889987764432365655443
No 338
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=23.19 E-value=75 Score=24.06 Aligned_cols=38 Identities=11% Similarity=-0.071 Sum_probs=23.6
Q ss_pred HHHHhcCEEEe--cCCCCCCccchHHHHHHHcCCcEEEeC
Q 017085 259 PYLAAIDVLVQ--NSQAWGECFGRITIEAMAFQLPVLGTA 296 (377)
Q Consensus 259 ~~~~~adv~l~--ps~~~~e~~~~~~~Ea~a~g~PvI~s~ 296 (377)
+.+..||++|. .......|...-+-=|.+.|+|||+-.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 45789999876 211002333333335889999999884
No 339
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=23.14 E-value=90 Score=26.34 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=35.8
Q ss_pred hhHHHhcCceEEEEEecCCCcchhHh-hhhhhhhcccCceEEEccc-----hhHHHhhhcccEEEEcC
Q 017085 4 AFLLRGVGTKVNWITIQKPSEEDEVI-YSLEHKMWDRGVQVISAKG-----QETINTALKADLIVLNT 65 (377)
Q Consensus 4 a~~L~~~G~eV~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Div~~~~ 65 (377)
.++|.+.||+|..+.+..+....... ..........|++++.... ....++..+||+|++-.
T Consensus 16 L~~L~~~~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~ 83 (305)
T 2bln_A 16 IEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFY 83 (305)
T ss_dssp HHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEEEES
T ss_pred HHHHHHCCCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCCcHHHHHHHHhcCCCEEEEec
Confidence 45677789999877755433211100 0123344556888765443 34556778999999864
No 340
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=22.85 E-value=44 Score=27.79 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=16.9
Q ss_pred cHhhHHHhcCceEEEEEecC
Q 017085 2 ELAFLLRGVGTKVNWITIQK 21 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~ 21 (377)
+|++.|.++||+|++++...
T Consensus 15 ~L~~~L~~~G~~V~~l~R~~ 34 (298)
T 4b4o_A 15 ALTQLLNARGHEVTLVSRKP 34 (298)
T ss_dssp HHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHCCCEEEEEECCC
Confidence 57899999999999998543
No 341
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=22.79 E-value=1.1e+02 Score=23.73 Aligned_cols=41 Identities=20% Similarity=0.145 Sum_probs=27.4
Q ss_pred CCHHHHHHhcCEEEecCCCCCCccch--HHHHHHH------cCCcEEEeCCCC
Q 017085 255 LTVAPYLAAIDVLVQNSQAWGECFGR--ITIEAMA------FQLPVLGTAAGG 299 (377)
Q Consensus 255 ~~~~~~~~~adv~l~ps~~~~e~~~~--~~~Ea~a------~g~PvI~s~~~~ 299 (377)
..-.-+...||.++.- ..|+|+ =+.|++. .++||+.-+..+
T Consensus 89 ~Rk~~~~~~sda~Ivl----PGG~GTl~El~e~lt~~q~g~~~kPvvll~~~g 137 (191)
T 1t35_A 89 ERKAKMSELADGFISM----PGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNG 137 (191)
T ss_dssp HHHHHHHHHCSEEEEC----SCCHHHHHHHHHHHHTTSCSSCCCCEEEECGGG
T ss_pred HHHHHHHHHCCEEEEe----CCCccHHHHHHHHHHHHHhCCCCCCEEEecCCc
Confidence 3344556789987742 344664 3678885 789999988633
No 342
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=22.70 E-value=2e+02 Score=20.73 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHH
Q 017085 190 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVA 258 (377)
Q Consensus 190 Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~ 258 (377)
.|....++++++ ...+++|+...-+.. +....+..++++.+++ +.+.+...++.
T Consensus 35 ~G~~~v~kai~~------------gkakLViiA~D~~p~-~~~~~l~~lc~~~~VP--~~~v~sk~eLG 88 (134)
T 2ale_A 35 KGANEATKTLNR------------GISEFIIMAADCEPI-EILLHLPLLCEDKNVP--YVFVPSRVALG 88 (134)
T ss_dssp ESHHHHHHHHHH------------TCEEEEEEETTCSSG-GGGTHHHHHHHHHTCC--EEEESCHHHHH
T ss_pred cCchHHHHHHHh------------CCCeEEEEeCCCCHH-HHHHHHHHHHHhcCCC--EEEECCHHHHH
Confidence 457777776652 578888776543221 2567788888888876 55555444443
No 343
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=22.61 E-value=3.5e+02 Score=22.98 Aligned_cols=84 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHhCCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc-ccHHHHHHHHHHHhcCC
Q 017085 166 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVMQKKI 244 (377)
Q Consensus 166 ~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~-~~~~~~~l~~~~~~~~~ 244 (377)
.+++.+| +-+...|.++| +...=...++.++..+ ++++.++++..-. .+...+.+++.+++.|.
T Consensus 145 Ti~e~~g-~l~gl~va~vG--D~~~va~Sl~~~~~~~------------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~ 209 (321)
T 1oth_A 145 TLQEHYS-SLKGLTLSWIG--DGNNILHSIMMSAAKF------------GMHLQAATPKGYEPDASVTKLAEQYAKENGT 209 (321)
T ss_dssp HHHHHHS-CCTTCEEEEES--CSSHHHHHHHTTTGGG------------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhC-CcCCcEEEEEC--CchhhHHHHHHHHHHc------------CCeEEEECCccccCCHHHHHHHHHHHHHcCC
Q ss_pred CCcEEEecCcCCHHHHHHhcCEEEe
Q 017085 245 QDRVHFVNKTLTVAPYLAAIDVLVQ 269 (377)
Q Consensus 245 ~~~v~~~g~~~~~~~~~~~adv~l~ 269 (377)
.-.+. .++.+.+..+|++..
T Consensus 210 ~~~~~-----~d~~eav~~aDvvy~ 229 (321)
T 1oth_A 210 KLLLT-----NDPLEAAHGGNVLIT 229 (321)
T ss_dssp CEEEE-----SCHHHHHTTCSEEEE
T ss_pred eEEEE-----ECHHHHhccCCEEEE
No 344
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.32 E-value=3.5e+02 Score=22.70 Aligned_cols=103 Identities=8% Similarity=0.010 Sum_probs=54.4
Q ss_pred ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCC-CcEEEecCc--CCHHHHHHhc
Q 017085 188 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAI 264 (377)
Q Consensus 188 ~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~-~~v~~~g~~--~~~~~~~~~a 264 (377)
-.|-...|..|+.-+.. +. ..-+++++|... ....-+.+.+...|.. -+-+|+|.. +.....+..=
T Consensus 55 L~kT~e~L~~Aa~~I~~-i~------~~~~ILfVgTk~----~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~eP 123 (305)
T 3iz6_A 55 LGKTWEKLQLAARVIVA-IE------NPQDIIVQSARP----YGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEP 123 (305)
T ss_dssp HHHHHHHHHHHHHHHHH-TT------SSCCEEEECCSH----HHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCC
T ss_pred HHHHHHHHHHHHHHHHH-Hh------CCCeEEEEeCcH----HHHHHHHHHHHHhCCccccCcccCCcccCcccccccCC
Confidence 34555666666654432 21 123567788752 2234455556555421 011344432 2222234556
Q ss_pred CEEEecCCCCCCccchHHHHHHHcCCcEEEe-CCCCcccce
Q 017085 265 DVLVQNSQAWGECFGRITIEAMAFQLPVLGT-AAGGTTEIV 304 (377)
Q Consensus 265 dv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s-~~~~~~e~~ 304 (377)
|++++..- ..-...+.||...|+|+|+- |+..-.+.+
T Consensus 124 dllvV~Dp---~~d~qAI~EA~~lnIPtIALvDTnsdp~~V 161 (305)
T 3iz6_A 124 RLLILTDP---RTDHQPIKESALGNIPTIAFCDTDSPMRYV 161 (305)
T ss_dssp SEEEESCT---TTTHHHHHHHHHHTCCEEEEECTTSCGGGC
T ss_pred ceeEEeCc---ccchHHHHHHHHcCCCEEEEEcCCCCcccc
Confidence 77766543 22356788999999999975 444444444
No 345
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=22.26 E-value=1.3e+02 Score=20.15 Aligned_cols=53 Identities=8% Similarity=0.080 Sum_probs=31.9
Q ss_pred eEEEEecccc--ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCc
Q 017085 178 LLFAIINSVS--RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 247 (377)
Q Consensus 178 ~~i~~~G~~~--~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (377)
.+++=.+.+. ..-|+..++++.+.+.+ .+.++.++|.. ..+.+..+..|+...
T Consensus 46 ~vvlDls~v~~iDssgl~~L~~~~~~~~~---------~g~~l~l~~~~--------~~v~~~l~~~gl~~~ 100 (110)
T 1sbo_A 46 KIVLDLSSVSYMDSAGLGTLVVILKDAKI---------NGKEFILSSLK--------ESISRILKLTHLDKI 100 (110)
T ss_dssp EEEEECTTCCCBCHHHHHHHHHHHHHHHH---------TTCEEEEESCC--------HHHHHHHHHTTCGGG
T ss_pred EEEEECCCCcEEccHHHHHHHHHHHHHHH---------cCCEEEEEeCC--------HHHHHHHHHhCccce
Confidence 3444444442 34577777777665543 56788888876 345566666666543
No 346
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=22.18 E-value=1.8e+02 Score=21.17 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=12.0
Q ss_pred chhHHHhhhcccEEEEcC
Q 017085 48 GQETINTALKADLIVLNT 65 (377)
Q Consensus 48 ~~~~~~~~~~~Div~~~~ 65 (377)
.+...++..++|+|+...
T Consensus 87 ~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 87 SIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp CHHHHHHTTSCCEEEECC
T ss_pred cHHHHHHCCCceEEEECC
Confidence 355556777788887754
No 347
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=22.15 E-value=62 Score=24.58 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=27.1
Q ss_pred HHHHHhcCEEEecCCCCCCccchH--HHHHHH-------cCCcEEEeCCCCcccce
Q 017085 258 APYLAAIDVLVQNSQAWGECFGRI--TIEAMA-------FQLPVLGTAAGGTTEIV 304 (377)
Q Consensus 258 ~~~~~~adv~l~ps~~~~e~~~~~--~~Ea~a-------~g~PvI~s~~~~~~e~~ 304 (377)
.-+...||.++.- ..|+|+- +.|++. .++| |..+ +.+..++
T Consensus 92 ~~~~~~sda~ivl----pGG~GTl~El~e~lt~~q~g~~~~kP-vll~-g~~~~l~ 141 (171)
T 1weh_A 92 GRLLDLGAGYLAL----PGGVGTLAELVLAWNLLYLRRGVGRP-LAVD-PYWLGLL 141 (171)
T ss_dssp HHHHHHEEEEEEC----SCCHHHHHHHHHHHHHHHTCSSCSCC-EEEC-GGGGGTC
T ss_pred HHHHHhCCEEEEe----CCCccHHHHHHHHHHHHHhCccCCCe-EEEC-cchhhhH
Confidence 3455678877642 3346655 778888 7899 7777 6555554
No 348
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=22.07 E-value=1.4e+02 Score=27.10 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=32.8
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEcCc
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTA 66 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~ 66 (377)
+|+.|.++|++|++.-.... .....+...|+.+........ ..++|+|+....
T Consensus 38 ~A~~l~~~G~~V~~~D~~~~--------~~~~~l~~~gi~~~~g~~~~~---~~~~d~vV~Spg 90 (494)
T 4hv4_A 38 IAEVLANEGYQISGSDLAPN--------SVTQHLTALGAQIYFHHRPEN---VLDASVVVVSTA 90 (494)
T ss_dssp HHHHHHHTTCEEEEECSSCC--------HHHHHHHHTTCEEESSCCGGG---GTTCSEEEECTT
T ss_pred HHHHHHhCCCeEEEEECCCC--------HHHHHHHHCCCEEECCCCHHH---cCCCCEEEECCC
Confidence 68999999999997643211 122345567887754322221 245899988753
No 349
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=22.06 E-value=2.8e+02 Score=23.44 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=34.8
Q ss_pred HhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEc-------cc---hhHHHhhhcccEEEEc
Q 017085 3 LAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-------KG---QETINTALKADLIVLN 64 (377)
Q Consensus 3 la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~Div~~~ 64 (377)
+++.|.+.||.=..+..............+...+...|+.+... .. ...-++..+||+|++.
T Consensus 142 ~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~ 213 (375)
T 4evq_A 142 TGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAF 213 (375)
T ss_dssp HHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEe
Confidence 57788888975443333332223333445667777788876321 11 1222345689999984
No 350
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=21.96 E-value=2.1e+02 Score=24.61 Aligned_cols=62 Identities=24% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCcCCHHHHH-H-hcCEEEecCCCCCCccchHHHHHHH-cCCcEEEeC
Q 017085 230 KFESELRNYVMQKKIQDRVHFVNKTLTVAPYL-A-AIDVLVQNSQAWGECFGRITIEAMA-FQLPVLGTA 296 (377)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~-~-~adv~l~ps~~~~e~~~~~~~Ea~a-~g~PvI~s~ 296 (377)
+....|.+.+++.|++ +.-..+-.+-.+++ . .+|++=.+|. +-.-..++++++ .|+|||.|.
T Consensus 91 e~~~~L~~~~~~~Gi~--~~st~~d~~svd~l~~~~v~~~KI~S~---~~~n~~LL~~va~~gkPviLst 155 (349)
T 2wqp_A 91 EDEIKLKEYVESKGMI--FISTLFSRAAALRLQRMDIPAYKIGSG---ECNNYPLIKLVASFGKPIILST 155 (349)
T ss_dssp HHHHHHHHHHHHTTCE--EEEEECSHHHHHHHHHHTCSCEEECGG---GTTCHHHHHHHHTTCSCEEEEC
T ss_pred HHHHHHHHHHHHhCCe--EEEeeCCHHHHHHHHhcCCCEEEECcc---cccCHHHHHHHHhcCCeEEEEC
Confidence 3457788888888864 22222222222334 2 2688888885 666667887665 799999885
No 351
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=21.90 E-value=85 Score=21.37 Aligned_cols=47 Identities=6% Similarity=0.101 Sum_probs=29.0
Q ss_pred cchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 189 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 189 ~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
.-|+..++.+.+.+.+ .+.++.++|.. ..+.+..+..|+...+.+..
T Consensus 58 ssgl~~L~~~~~~~~~---------~g~~l~l~~~~--------~~v~~~l~~~gl~~~~~i~~ 104 (116)
T 1th8_B 58 SSGLGVILGRYKQIKN---------VGGQMVVCAVS--------PAVKRLFDMSGLFKIIRVEA 104 (116)
T ss_dssp HHHHHHHHHHHHHHHH---------TTCCEEEESCC--------HHHHHHHHHHTGGGTSEEES
T ss_pred cHHHHHHHHHHHHHHH---------hCCeEEEEeCC--------HHHHHHHHHhCCceeEEEeC
Confidence 4677777777775544 56788888876 34455555556554444443
No 352
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=21.68 E-value=51 Score=26.26 Aligned_cols=63 Identities=5% Similarity=-0.052 Sum_probs=42.0
Q ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEEE
Q 017085 215 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLG 294 (377)
Q Consensus 215 ~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~ 294 (377)
++++.+.|-.. ...+.+.+.++.+|.. +. ++. ..+.-+|.+.. . -..+++.|++.|+|||.
T Consensus 16 ~~~i~~SG~~~----~~~~~l~~~i~~lGg~----v~---~~~----~~~THLI~~~~--~--rT~K~l~A~~~g~~IVs 76 (219)
T 3sqd_A 16 TPFVLFTGFEP----VQVQQYIKKLYILGGE----VA---ESA----QKCTHLIASKV--T--RTVKFLTAISVVKHIVT 76 (219)
T ss_dssp CCEEEECSCCH----HHHHHHHHHHHHTTCE----EC---SSG----GGCSEEECSSC--C--CCHHHHHHTTTCSEEEC
T ss_pred CeEEEEeCCCh----HHHHHHHHHHHHCCCE----Ee---CCC----CCceEEEECCC--C--CCHHHHHHHHcCCCEec
Confidence 46666666432 3456788888888742 22 232 67888887653 1 13589999999999998
Q ss_pred eC
Q 017085 295 TA 296 (377)
Q Consensus 295 s~ 296 (377)
.+
T Consensus 77 ~~ 78 (219)
T 3sqd_A 77 PE 78 (219)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 353
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=21.64 E-value=3.4e+02 Score=23.43 Aligned_cols=77 Identities=8% Similarity=-0.043 Sum_probs=38.5
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc----CCHHHHHHhcCEEEecCCCCCCccchHHH---HHHH--
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAAIDVLVQNSQAWGECFGRITI---EAMA-- 287 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~----~~~~~~~~~adv~l~ps~~~~e~~~~~~~---Ea~a-- 287 (377)
.+++.++.........+.+.+.+.+.+. .+....-. +++.+-+..+|.+++.+-.|..+.+-.+- +.+.
T Consensus 259 ~~i~~~S~~gnT~~la~~i~~~l~~~g~--~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~ 336 (404)
T 2ohh_A 259 VTVIYDTMHGSTRKMAHAIAEGAMSEGV--DVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGL 336 (404)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHTTTC--EEEEEETTTSCHHHHHHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhCCC--eEEEEECCCCCHHHHHHHHHHCCEEEEECccccccchHHHHHHHHHhhhc
Confidence 4455666433222334444444444443 24444322 23445678899888755433555554433 3322
Q ss_pred -----cCCcEEEe
Q 017085 288 -----FQLPVLGT 295 (377)
Q Consensus 288 -----~g~PvI~s 295 (377)
.|+|+...
T Consensus 337 ~~~~l~~k~~~~~ 349 (404)
T 2ohh_A 337 KFNRTLTRKALVF 349 (404)
T ss_dssp CGGGTCCEEEEEE
T ss_pred cccccCCCEEEEE
Confidence 57787644
No 354
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=21.62 E-value=1.7e+02 Score=25.19 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=31.3
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEE
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVL 63 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~ 63 (377)
.++..+.+.|.+|+++++..-.+...+...........|..+.-..... .-.+.|+|+.
T Consensus 190 Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~---av~~aDvvyt 248 (339)
T 4a8t_A 190 SLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS---SVEGADFLYT 248 (339)
T ss_dssp HHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG---GGTTCSEEEE
T ss_pred HHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh---HHcCCCEEEe
Confidence 3567788889999999876544333333222222233454443222222 2245777775
No 355
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=21.56 E-value=90 Score=21.92 Aligned_cols=58 Identities=5% Similarity=0.158 Sum_probs=37.1
Q ss_pred eEEEEecccc--ccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEec
Q 017085 178 LLFAIINSVS--RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 252 (377)
Q Consensus 178 ~~i~~~G~~~--~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g 252 (377)
.+++=.+.+. ..-|+..|+.+.+.+.+ .+.++.++|.. ..+++..+..|+...+.+..
T Consensus 54 ~vvlDls~V~~iDSsGl~~L~~~~~~~~~---------~g~~l~l~~~~--------~~v~~~l~~~gl~~~~~i~~ 113 (125)
T 2ka5_A 54 KIFLVLSDVESIDSFSLGVIVNILKSISS---------SGGFFALVSPN--------EKVERVLSLTNLDRIVKIYD 113 (125)
T ss_dssp EEEEECTTCSCCCHHHHHHHHHHHHHHHH---------HTCEEEEECCC--------HHHHHHHHHTTSTTTSEEES
T ss_pred EEEEECCCCCEEcHHHHHHHHHHHHHHHH---------cCCEEEEEeCC--------HHHHHHHHHcCCCceEEecC
Confidence 4454455442 34577777777776544 46889999886 45666677777766555444
No 356
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=21.55 E-value=1.6e+02 Score=25.43 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=31.4
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEE
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVL 63 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~ 63 (377)
.++..+.+.|.+|+++++..-.+...+...........|..+.-..... .-.+.|+|+.
T Consensus 168 Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~---av~~aDVVyt 226 (355)
T 4a8p_A 168 SLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS---SVEGADFLYT 226 (355)
T ss_dssp HHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG---GGTTCSEEEE
T ss_pred HHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH---HHcCCCEEEe
Confidence 3567778889999999876544333333222222233454443322222 2245777775
No 357
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=21.37 E-value=2.6e+02 Score=20.96 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCc---CCHHHHHH-----hcCEEEecCCCCCCccchHHHHHHHcCCcEEEe
Q 017085 230 KFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLA-----AIDVLVQNSQAWGECFGRITIEAMAFQLPVLGT 295 (377)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~v~~~g~~---~~~~~~~~-----~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI~s 295 (377)
+..++....++++|++..+.+.+.. +.+.++.+ .+++++.-.- -.-.+.-+=|-..-+|||+-
T Consensus 17 ~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG---~aa~LpgvvA~~t~~PVIgV 87 (163)
T 3ors_A 17 KIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAG---GAAHLPGMVASLTTLPVIGV 87 (163)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEE---SSCCHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECC---chhhhHHHHHhccCCCEEEe
Confidence 3455555556666666555555532 34444443 2555553321 11233334445566677653
No 358
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=21.27 E-value=1.1e+02 Score=25.88 Aligned_cols=85 Identities=8% Similarity=0.041 Sum_probs=0.0
Q ss_pred cCCCeEEEEEecCC-CcccHHHHHHHHHHHhcCCCCcEEEecCc-----CCHHHHHH---hcCEEEecCCCCCCccchHH
Q 017085 212 EVPSVHAVIIGSDM-NAQTKFESELRNYVMQKKIQDRVHFVNKT-----LTVAPYLA---AIDVLVQNSQAWGECFGRIT 282 (377)
Q Consensus 212 ~~~~~~l~i~G~~~-~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-----~~~~~~~~---~adv~l~ps~~~~e~~~~~~ 282 (377)
..+.+-+++-+... +-.....+.+++.++++|..-.+...+.. +.+..++. ..|.+++... .....-.+
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~--~~~~~~~~ 79 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNE--QYVAPQIL 79 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC--SSHHHHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCc--hhhHHHHH
Q ss_pred HHHHHcCCcEEEeCCC
Q 017085 283 IEAMAFQLPVLGTAAG 298 (377)
Q Consensus 283 ~Ea~a~g~PvI~s~~~ 298 (377)
-++...|+|||..+..
T Consensus 80 ~~~~~~giPvV~~~~~ 95 (350)
T 3h75_A 80 RLSQGSGIKLFIVNSP 95 (350)
T ss_dssp HHHTTSCCEEEEEESC
T ss_pred HHHHhCCCcEEEEcCC
No 359
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=21.24 E-value=3.6e+02 Score=22.46 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=37.5
Q ss_pred cCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEEEecCC
Q 017085 212 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 212 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~l~ps~ 272 (377)
...+-+.+++|.+.- .-.-+..+....| -.|+..... .++.++++.||+++...-
T Consensus 156 ~l~gk~vvVIG~s~i----VG~p~A~lL~~~g--AtVtv~hs~t~~L~~~~~~ADIVI~Avg 211 (288)
T 1b0a_A 156 DTFGLNAVVIGASNI----VGRPMSMELLLAG--CTTTVTHRFTKNLRHHVENADLLIVAVG 211 (288)
T ss_dssp CCTTCEEEEECCCTT----THHHHHHHHHTTT--CEEEEECSSCSCHHHHHHHCSEEEECSC
T ss_pred CCCCCEEEEECCChH----HHHHHHHHHHHCC--CeEEEEeCCchhHHHHhccCCEEEECCC
Confidence 446789999999842 2344444555444 357666554 889999999999997554
No 360
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=21.17 E-value=53 Score=25.15 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=17.7
Q ss_pred cHhhHHHhcCceEEEEEecCC
Q 017085 2 ELAFLLRGVGTKVNWITIQKP 22 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~ 22 (377)
++.+.|++.|++|+++.+...
T Consensus 23 ~ll~~L~~~g~~V~vv~T~~A 43 (175)
T 3qjg_A 23 HYIIELKSKFDEVNVIASTNG 43 (175)
T ss_dssp HHHHHHTTTCSEEEEEECTGG
T ss_pred HHHHHHHHCCCEEEEEECcCH
Confidence 578899999999999986653
No 361
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=21.08 E-value=3.6e+02 Score=22.41 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=37.1
Q ss_pred cCCCeEEEEEecCCCcccHHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHhcCEEEecCC
Q 017085 212 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQ 272 (377)
Q Consensus 212 ~~~~~~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~-~~~~~~~~~adv~l~ps~ 272 (377)
...+-+.+++|.+.. .-.-+..++...|- .|+..... .++.++.+.||+++...-
T Consensus 157 ~l~Gk~vvVvGrs~i----VG~p~A~lL~~~gA--tVtv~h~~t~~L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 157 DLEGKDAVIIGASNI----VGRPMATMLLNAGA--TVSVCHIKTKDLSLYTRQADLIIVAAG 212 (285)
T ss_dssp CCTTCEEEEECCCTT----THHHHHHHHHHTTC--EEEEECTTCSCHHHHHTTCSEEEECSS
T ss_pred CCCCCEEEEECCCch----HHHHHHHHHHHCCC--eEEEEeCCchhHHHHhhcCCEEEECCC
Confidence 346789999997631 23444445555553 46666554 889999999999997543
No 362
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=20.96 E-value=41 Score=30.39 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.1
Q ss_pred CcHhhHHHhc--CceEEEEEecC
Q 017085 1 MELAFLLRGV--GTKVNWITIQK 21 (377)
Q Consensus 1 ~~la~~L~~~--G~eV~v~~~~~ 21 (377)
++||+.|+++ ||+|+++++..
T Consensus 27 l~La~~L~~r~pG~~Vt~v~t~~ 49 (463)
T 2acv_A 27 LEFAKLLTNHDKNLYITVFCIKF 49 (463)
T ss_dssp HHHHHHHHHTCTTEEEEEEECCC
T ss_pred HHHHHHHHhcCCCcEEEEEEcCC
Confidence 3689999998 99999998664
No 363
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=20.85 E-value=1.5e+02 Score=26.58 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=34.3
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhc-ccEEEEcCc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK-ADLIVLNTA 66 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Div~~~~~ 66 (377)
..|+.|.++||+|++.-...... . .....+...|+++..-.....+. .+ +|+|+....
T Consensus 23 s~A~~l~~~G~~V~~~D~~~~~~-~----~~~~~L~~~gi~~~~g~~~~~~~--~~~~d~vv~spg 81 (451)
T 3lk7_A 23 AAARLLAKLGAIVTVNDGKPFDE-N----PTAQSLLEEGIKVVCGSHPLELL--DEDFCYMIKNPG 81 (451)
T ss_dssp HHHHHHHHTTCEEEEEESSCGGG-C----HHHHHHHHTTCEEEESCCCGGGG--GSCEEEEEECTT
T ss_pred HHHHHHHhCCCEEEEEeCCcccC-C----hHHHHHHhCCCEEEECCChHHhh--cCCCCEEEECCc
Confidence 35889999999999875432110 1 12234556788776433222221 34 899988753
No 364
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=20.64 E-value=2.2e+02 Score=23.77 Aligned_cols=66 Identities=15% Similarity=-0.001 Sum_probs=35.7
Q ss_pred HhhHHHhcCc--eEEEEEecCCCcchhHhhhhhhhhcccCc--eE--EEccc----------hhHHHhhhcccEEEEcCc
Q 017085 3 LAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGV--QV--ISAKG----------QETINTALKADLIVLNTA 66 (377)
Q Consensus 3 la~~L~~~G~--eV~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~----------~~~~~~~~~~Div~~~~~ 66 (377)
++..|.+.|| .|-+++....+........+...++..+. ++ ..... ...++. ..+|+|++...
T Consensus 119 ~a~~l~~~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~-~~~daI~~~~d 197 (318)
T 2fqx_A 119 AAALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYD-SGVNVIFQVAG 197 (318)
T ss_dssp HHHHHHHHTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHH-TTCCEEEEECG
T ss_pred HHHHHhccCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHH-CCCcEEEECCC
Confidence 3678889999 88888754333333334444555544443 22 11111 122222 46999999876
Q ss_pred hhh
Q 017085 67 VAG 69 (377)
Q Consensus 67 ~~~ 69 (377)
..+
T Consensus 198 ~~a 200 (318)
T 2fqx_A 198 GTG 200 (318)
T ss_dssp GGH
T ss_pred CCc
Confidence 543
No 365
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=20.27 E-value=1.1e+02 Score=25.01 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=39.2
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCCCC-cEEEecCc--CCHHHHHHhcCEEEecCCCCCCccchHHHHHHHcCCcEE
Q 017085 217 HAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 293 (377)
Q Consensus 217 ~l~i~G~~~~~~~~~~~~l~~~~~~~~~~~-~v~~~g~~--~~~~~~~~~adv~l~ps~~~~e~~~~~~~Ea~a~g~PvI 293 (377)
+++++|... .....+.+.+...|-.. +-.|+|.. +....-+..=|++++... ..-...+.||...|+|+|
T Consensus 72 ~vlfVgTk~----~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp---~~d~~ai~EA~~l~IP~I 144 (252)
T 3u5c_A 72 DVVAISSRT----FGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDP---RSDAQAIKEASYVNIPVI 144 (252)
T ss_dssp GEEEEECSH----HHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCT---TTTHHHHHHHHTTTCCEE
T ss_pred EEEEEeCCc----HHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCC---ccchHHHHHHHHcCCCEE
Confidence 556777752 22344555565554311 11244422 222223455677666542 223567889999999999
Q ss_pred Ee
Q 017085 294 GT 295 (377)
Q Consensus 294 ~s 295 (377)
+-
T Consensus 145 al 146 (252)
T 3u5c_A 145 AL 146 (252)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 366
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=20.26 E-value=5.1e+02 Score=23.82 Aligned_cols=218 Identities=10% Similarity=0.073 Sum_probs=112.3
Q ss_pred hhcccEEEEcCch------hhhHHHHHhhcCCCccccceeEEeeeecccccc-------hh-------hhccccccceee
Q 017085 55 ALKADLIVLNTAV------AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-------LD-------YVKHLPLVAGAM 114 (377)
Q Consensus 55 ~~~~Div~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-------~~-------~~~~~~~~~~~~ 114 (377)
..++|++++.-.. ...++.++..... ......+..+|-..-.+.. +. .+..--..|.++
T Consensus 133 ~~~~dv~i~eiggtvgdies~pf~ea~rq~~~-~~g~~n~~~ih~tlvp~~~~~ge~ktkptqhsv~~Lrs~GIqPdilv 211 (535)
T 3nva_A 133 INNAEITLVEIGGTVGDIESLPFLEAVRQLKL-EEGEDNVIFVHIALVEYLSVTGELKTKPLQHSVQELRRIGIQPDFIV 211 (535)
T ss_dssp HHTCSEEEEEECSCTTSGGGHHHHHHHHHHHH-HHCTTTEEEEEEEECCBCTTTSSBCCHHHHHHHHHHHHHTCCCSEEE
T ss_pred cCCCCEEEEEeCCccchhcccHHHHHHHHHHH-HhCCCCEEEEEeeccceecCCCcccCCchHHHHHHHHhCCCCCCEEE
Confidence 4789999987421 3444444443222 1122344556643222211 11 111123567788
Q ss_pred eeccc-hhhHhhhhhhhhhhccCCCeEEEEcCChhhhHHHhhhhhhhhhhHHHHHHHhCCCCCCeEEEEeccccccchhH
Q 017085 115 IDSHV-TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 193 (377)
Q Consensus 115 ~~s~~-~~~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~ 193 (377)
|-|.. ..+.++++..-...++.+.+.-++. +|.-..-| .....+...+.+.++++++... .+
T Consensus 212 cRs~~~l~~~~r~KiaLfc~V~~~~VI~i~D-vdtiY~vp--l~L~~qGl~~~~~~~l~l~~~~------------~~-- 274 (535)
T 3nva_A 212 GRATLPLDDETRRKIALFTNVKVDHIVSSYD-VETSYEVP--IILESQKLVSKILSRLKLEDRQ------------VD-- 274 (535)
T ss_dssp EEESSCCCHHHHHHHHHHTTCCGGGEEEEEC-CSCGGGHH--HHHHHHTHHHHHHHHTTCCCCC------------CC--
T ss_pred EecCCCCCHHHHHhhhhhcCCChhceEecCC-CChHHHhH--HHHHHCCcHHHHHHHcCCCCCC------------CC--
Confidence 87754 3456666665556677777766664 44332221 1112233456778889986431 11
Q ss_pred HHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCcccHHHH---HHHHHHHhcCCCCcEEEecCc----CCH--HHHHHhc
Q 017085 194 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFES---ELRNYVMQKKIQDRVHFVNKT----LTV--APYLAAI 264 (377)
Q Consensus 194 ~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~---~l~~~~~~~~~~~~v~~~g~~----~~~--~~~~~~a 264 (377)
+..|..+.+++++.+ -...+++-+||.-......|.. .|.......+..-++.+.... +.. .+.+..+
T Consensus 275 --~~~w~~~~~~~~~~~-~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~ 351 (535)
T 3nva_A 275 --LTDWISFVNNIKGIN-SKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNV 351 (535)
T ss_dssp --CHHHHHHHHHHHTTT-CCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSC
T ss_pred --HHHHHHHHHHhhccC-CCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCC
Confidence 233333333433100 1246899999995443333433 333334445544466776653 111 4678899
Q ss_pred CEEEecCCCCCCccc-----hHHHHHHHcCCcEEEe
Q 017085 265 DVLVQNSQAWGECFG-----RITIEAMAFQLPVLGT 295 (377)
Q Consensus 265 dv~l~ps~~~~e~~~-----~~~~Ea~a~g~PvI~s 295 (377)
|.+++|.- ....+ ..+-+|...++|+++.
T Consensus 352 DgIIlpGG--~G~~~~~g~i~~ir~a~~~~~PiLGI 385 (535)
T 3nva_A 352 NGIIVLPG--FGSRGAEGKIKAIKYAREHNIPFLGI 385 (535)
T ss_dssp SEEEECCC--CSSTTHHHHHHHHHHHHHHTCCEEEE
T ss_pred CEEEECCC--CCCccHHHHHHHHHHHHHcCCcEEEE
Confidence 99998864 21112 2233566789999974
No 367
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=20.23 E-value=1.8e+02 Score=24.58 Aligned_cols=61 Identities=20% Similarity=0.147 Sum_probs=32.0
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhcccCceEEEccchhHHHhhhcccEEEEc
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLN 64 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~ 64 (377)
.++..+.+.|.+|+++++..-.+...+...........|..+......... -.+.|+|+..
T Consensus 164 Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~ea--v~~aDvvy~~ 224 (307)
T 2i6u_A 164 SLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAA--AAGADVLVTD 224 (307)
T ss_dssp HHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHH--HTTCSEEEEC
T ss_pred HHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHH--hcCCCEEEec
Confidence 356777888999998887654433323222222222345444333333322 2457888774
No 368
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=20.18 E-value=2.5e+02 Score=20.25 Aligned_cols=57 Identities=19% Similarity=0.133 Sum_probs=32.4
Q ss_pred cHhhHHHhcCceEEEEEecCCCcchhHhhhhhhhhc-ccCceEEEcc--chhHHHh--hhcccEEEEcCch
Q 017085 2 ELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW-DRGVQVISAK--GQETINT--ALKADLIVLNTAV 67 (377)
Q Consensus 2 ~la~~L~~~G~eV~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~Div~~~~~~ 67 (377)
.+++.|.+.|++|+++...... ...+. ..|..++... ....+.. ..++|+|+...+.
T Consensus 33 ~la~~L~~~g~~V~vid~~~~~---------~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 33 LIANLASSSGHSVVVVDKNEYA---------FHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTND 94 (155)
T ss_dssp HHHHHHHHTTCEEEEEESCGGG---------GGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred HHHHHHHhCCCeEEEEECCHHH---------HHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence 3688899999999988754311 11222 3455444322 1122222 3578999988765
No 369
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=20.11 E-value=4.1e+02 Score=22.71 Aligned_cols=86 Identities=12% Similarity=0.030 Sum_probs=48.9
Q ss_pred HHHHHHHh--CCCCCCeEEEEeccccccchhHHHHHHHHHHHHHHhhhcccCCCeEEEEEecCCCc-ccHHHHHHHHHHH
Q 017085 164 REHVRESL--GVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVM 240 (377)
Q Consensus 164 ~~~~r~~~--~~~~~~~~i~~~G~~~~~Kg~~~ll~a~~~l~~~l~~~~~~~~~~~l~i~G~~~~~-~~~~~~~l~~~~~ 240 (377)
--.+++.+ |-+-+...|.++|-. ..=...++.++.. -++++.++++..-. .+...+..++.++
T Consensus 160 l~Ti~e~~~~G~~l~glkva~vGD~--~rva~Sl~~~~~~------------~G~~v~~~~P~~~~~~~~~~~~~~~~a~ 225 (339)
T 4a8t_A 160 LCTMVEHLPEGKKLEDCKVVFVGDA--TQVCFSLGLITTK------------MGMNFVHFGPEGFQLNEEHQAKLAKNCE 225 (339)
T ss_dssp HHHHHHTCCTTCCGGGCEEEEESSC--CHHHHHHHHHHHH------------TTCEEEEECCTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCEEEEECCC--chhHHHHHHHHHH------------cCCEEEEECCcccCCCHHHHHHHHHHHH
Confidence 34567777 522345788899965 2222333443332 36899999984322 1123445555556
Q ss_pred hcCCCCcEEEecCcCCHHHHHHhcCEEEe
Q 017085 241 QKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 269 (377)
Q Consensus 241 ~~~~~~~v~~~g~~~~~~~~~~~adv~l~ 269 (377)
+.|. .+.+.. ++. .+..||++..
T Consensus 226 ~~g~--~v~~~~---d~~-av~~aDvvyt 248 (339)
T 4a8t_A 226 VSGG--SFLVTD---DAS-SVEGADFLYT 248 (339)
T ss_dssp HHCC--EEEEEC---CGG-GGTTCSEEEE
T ss_pred HcCC--EEEEEC---Chh-HHcCCCEEEe
Confidence 6553 355443 556 7899998875
No 370
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=20.10 E-value=2e+02 Score=25.19 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHh--cCEEEecCCCCCCccchHHHHHHH-cCCcEEEeC
Q 017085 230 KFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA-FQLPVLGTA 296 (377)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~v~~~g~~--~~~~~~~~~--adv~l~ps~~~~e~~~~~~~Ea~a-~g~PvI~s~ 296 (377)
+....|.+.+++.|++ |...+ .+-.+++.. +|++=.+|. +-.-..++++++ .|+|||.|.
T Consensus 101 e~~~~L~~~~~~~Gi~----~~stpfD~~svd~l~~~~vd~~KIgS~---~~~N~pLL~~va~~gKPViLSt 165 (385)
T 1vli_A 101 EWILPLLDYCREKQVI----FLSTVCDEGSADLLQSTSPSAFKIASY---EINHLPLLKYVARLNRPMIFST 165 (385)
T ss_dssp GGHHHHHHHHHHTTCE----EECBCCSHHHHHHHHTTCCSCEEECGG---GTTCHHHHHHHHTTCSCEEEEC
T ss_pred HHHHHHHHHHHHcCCc----EEEccCCHHHHHHHHhcCCCEEEECcc---cccCHHHHHHHHhcCCeEEEEC
Confidence 3567888888888753 33322 222344433 677888885 666667787665 799999885
No 371
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=20.09 E-value=3e+02 Score=23.11 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=34.2
Q ss_pred HhhHHHhcCce-EEEEEecCCCcchhHhhhhhhhhcccCceEEEcc-------c---hhHHHhhhcccEEEEc
Q 017085 3 LAFLLRGVGTK-VNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------G---QETINTALKADLIVLN 64 (377)
Q Consensus 3 la~~L~~~G~e-V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~Div~~~ 64 (377)
+++.|.+.|+. |.++. ............+...+...|+.+.... . ...-++..+||+|++.
T Consensus 130 ~~~~l~~~g~~~ia~i~-~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~ 201 (368)
T 4eyg_A 130 IGDWAAKNGIKKVATLT-SDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVF 201 (368)
T ss_dssp HHHHHHHTTCCEEEEEE-ESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHcCCCEEEEEe-cCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEe
Confidence 56778888875 44554 3222223334456666777787763211 1 1222345689999984
Done!