Your job contains 1 sequence.
>017087
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTF
VGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCP
TVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA
WIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV
DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG
GQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF
RNFEHRGMVFQELAFSA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017087
(377 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CHY_2071 - symbol:CHY_2071 "UDP-N-acetylmuramoyl... 384 1.5e-35 1
UNIPROTKB|Q9KPG5 - symbol:murD "UDP-N-acetylmuramoylalani... 340 6.9e-31 1
TIGR_CMR|VC_2403 - symbol:VC_2403 "UDP-N-acetylmuramoylal... 340 6.9e-31 1
TIGR_CMR|SO_4221 - symbol:SO_4221 "UDP-N-acetylmuramoylal... 339 8.8e-31 1
TIGR_CMR|CPS_4467 - symbol:CPS_4467 "UDP-N-acetylmuramoyl... 336 1.8e-30 1
TIGR_CMR|GSU_3071 - symbol:GSU_3071 "UDP-N-acetylmuramoyl... 230 1.6e-28 2
UNIPROTKB|Q97RU8 - symbol:murD "UDP-N-acetylmuramoylalani... 317 1.9e-28 1
TIGR_CMR|SPO_1187 - symbol:SPO_1187 "UDP-N-acetylmuramoyl... 167 1.7e-21 2
TIGR_CMR|BA_4051 - symbol:BA_4051 "UDP-N-acetylmuramoylal... 266 2.0e-21 1
TIGR_CMR|CJE_0482 - symbol:CJE_0482 "UDP-N-acetylmuramoyl... 185 7.4e-21 3
UNIPROTKB|P14900 - symbol:murD species:83333 "Escherichia... 253 1.1e-19 1
TIGR_CMR|CBU_0131 - symbol:CBU_0131 "UDP-N-acetylmuramoyl... 225 3.1e-16 1
UNIPROTKB|O06222 - symbol:murD "UDP-N-acetylmuramoylalani... 129 7.3e-16 3
UNIPROTKB|P11880 - symbol:murF species:83333 "Escherichia... 172 4.1e-10 1
TIGR_CMR|BA_4053 - symbol:BA_4053 "UDP-N-acetylmuramoylal... 161 1.4e-08 2
TIGR_CMR|GSU_3074 - symbol:GSU_3074 "UDP-N-acetylmuramoyl... 163 1.5e-08 2
TIGR_CMR|CPS_4469 - symbol:CPS_4469 "UDP-N-acetylmuramoyl... 136 5.4e-06 1
UNIPROTKB|Q9KP37 - symbol:VC_2542 "UDP-N-acetylmuramate:L... 135 5.7e-06 1
TIGR_CMR|VC_2542 - symbol:VC_2542 "UDP-N-acetylmuramate:L... 135 5.7e-06 1
TIGR_CMR|SO_4224 - symbol:SO_4224 "UDP-N-acetylmuramoylal... 135 6.5e-06 1
UNIPROTKB|Q9X6N4 - symbol:murE "UDP-N-acetylmuramoyl-L-al... 135 6.6e-06 1
TIGR_CMR|VC_2406 - symbol:VC_2406 "UDP-N-acetylmuramoylal... 135 6.6e-06 1
TIGR_CMR|CHY_2068 - symbol:CHY_2068 "UDP-N-acetylmuramate... 131 1.7e-05 1
UNIPROTKB|P0A5L4 - symbol:murF "UDP-N-acetylmuramoyl-trip... 130 2.5e-05 1
TIGR_CMR|CBU_0124 - symbol:CBU_0124 "UDP-N-acetylmuramoyl... 123 0.00012 1
UNIPROTKB|Q0BXT7 - symbol:murE "UDP-N-acetylmuramoyl-L-al... 122 0.00017 1
UNIPROTKB|Q3AFG6 - symbol:CHY_0246 "Mur ligase family pro... 113 0.00021 2
TIGR_CMR|CHY_0246 - symbol:CHY_0246 "Mur ligase family pr... 113 0.00021 2
UNIPROTKB|Q9KPG3 - symbol:VC_2405 "UDP-N-acetylmuramoyl-t... 119 0.00034 1
TIGR_CMR|VC_2405 - symbol:VC_2405 "UDP-N-acetylmuramoylal... 119 0.00034 1
UNIPROTKB|Q83F28 - symbol:murE "UDP-N-acetylmuramoyl-L-al... 116 0.00082 1
TIGR_CMR|CBU_0123 - symbol:CBU_0123 "UDP-N-acetylmuramoyl... 116 0.00082 1
TIGR_CMR|CHY_2074 - symbol:CHY_2074 "UDP-N-acetylmuramoyl... 116 0.00083 1
>TIGR_CMR|CHY_2071 [details] [associations]
symbol:CHY_2071 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase
activity" evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101
InterPro:IPR005762 InterPro:IPR006367 InterPro:IPR013221
Pfam:PF02875 Pfam:PF08245 Pfam:PF13241 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0007049 GO:GO:0009252 GO:GO:0019354
GO:GO:0043115 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771 HOGENOM:HOG000049428
KO:K01925 OMA:RCGELDV GO:GO:0008764 PANTHER:PTHR23135:SF2
TIGRFAMs:TIGR01087 RefSeq:YP_360890.1 STRING:Q3AAE4 GeneID:3727011
KEGG:chy:CHY_2071 PATRIC:21277223 ProtClustDB:PRK14106
BioCyc:CHYD246194:GJCN-2070-MONOMER Uniprot:Q3AAE4
Length = 451
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 114/395 (28%), Positives = 198/395 (50%)
Query: 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
W L + L +A L+ G V+ E++ A + + I+AVTGTNGK+T +++
Sbjct: 69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
G++L G + + GN+G PL EA + ++ +EVSS+Q+E K F P
Sbjct: 127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
V+V+LNLTPDHL+RHKT++ Y K +F + T + +L + + + + + +
Sbjct: 177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236
Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
++ K V ++GV ++ + N+ + G HN NA +A ++ GV
Sbjct: 237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENA-LATVAACW-SFGV 294
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
+ + + + HR++ V +I GV +V+DSK TN ++T L + V++ G
Sbjct: 295 SGKNIERGLRNFQGVAHRLEKV-AEINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352
Query: 301 GQAK---FGYSG----------VLIWKTL--VNNGLSI---PCFAVA-NMKDAVNHARRM 341
G+ K FG +L+ + + L + + VA + +DAV A+ +
Sbjct: 353 GRNKGNSFGELAREIREKVRFTILVGECREELKEALEMVGYDKYVVAESFEDAVKKAKEL 412
Query: 342 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
A GD ++LSP AS+D F+N+E RG +F+ L +
Sbjct: 413 ARPGDVVLLSPAAASWDMFKNYEERGELFKRLVLN 447
>UNIPROTKB|Q9KPG5 [details] [associations]
symbol:murD "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase
activity" evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101
InterPro:IPR005762 InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0771 KO:K01925 OMA:RCGELDV GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 PIR:G82081
RefSeq:NP_232033.2 ProteinModelPortal:Q9KPG5 SMR:Q9KPG5
DNASU:2613072 GeneID:2613072 KEGG:vch:VC2403 PATRIC:20083827
ProtClustDB:PRK04663 Uniprot:Q9KPG5
Length = 440
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 115/402 (28%), Positives = 188/402 (46%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H + N +
Sbjct: 170 TSSLKLKAAAF-LNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV------NADDTQTFP 222
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASF---EVPAVGVVSQLQLHNMKVMGRHNYHNA--AV 228
H +L + F GV+ + A E + + + ++GRHN N +
Sbjct: 223 DHAAHLQVV-TF-GVEQAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVL 280
Query: 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLM 288
A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +T L
Sbjct: 281 ALLDSAGVNFRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKATNVASTLAALS 335
Query: 289 DLKGH-KCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA---------------NMK 332
LK + +L+GG K G + L + + CF V +M+
Sbjct: 336 GLKIEGQLYLLVGGVGK-GADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARFYDSME 394
Query: 333 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+ R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 395 SIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>TIGR_CMR|VC_2403 [details] [associations]
symbol:VC_2403 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0771 KO:K01925 OMA:RCGELDV GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 PIR:G82081
RefSeq:NP_232033.2 ProteinModelPortal:Q9KPG5 SMR:Q9KPG5
DNASU:2613072 GeneID:2613072 KEGG:vch:VC2403 PATRIC:20083827
ProtClustDB:PRK04663 Uniprot:Q9KPG5
Length = 440
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 115/402 (28%), Positives = 188/402 (46%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H + N +
Sbjct: 170 TSSLKLKAAAF-LNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV------NADDTQTFP 222
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASF---EVPAVGVVSQLQLHNMKVMGRHNYHNA--AV 228
H +L + F GV+ + A E + + + ++GRHN N +
Sbjct: 223 DHAAHLQVV-TF-GVEQAAQFSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVL 280
Query: 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLM 288
A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +T L
Sbjct: 281 ALLDSAGVNFRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKATNVASTLAALS 335
Query: 289 DLKGH-KCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA---------------NMK 332
LK + +L+GG K G + L + + CF V +M+
Sbjct: 336 GLKIEGQLYLLVGGVGK-GADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARFYDSME 394
Query: 333 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+ R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 395 SIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>TIGR_CMR|SO_4221 [details] [associations]
symbol:SO_4221 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:211586 "Shewanella oneidensis MR-1" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0007049 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771
KO:K01925 OMA:RCGELDV GO:GO:0008764 PANTHER:PTHR23135:SF2
TIGRFAMs:TIGR01087 HOGENOM:HOG000049427 ProtClustDB:PRK03803
RefSeq:NP_719749.1 ProteinModelPortal:Q8E9P6 GeneID:1171825
KEGG:son:SO_4221 PATRIC:23528080 Uniprot:Q8E9P6
Length = 439
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 115/370 (31%), Positives = 181/370 (48%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGK+TV T VG+ML GI VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKTTVTTLVGEMLREAGIAVAVGGNIGI 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL K + V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLKENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWI-GAFPGVKIDTEAKT 196
Y K L+ ++ + L + +N+ + F LA G G+ D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGI-CDSKIYH 251
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
E+ + VS ++G HN+ N +AA++++ +GVD + + +
Sbjct: 252 GHSEIMPITEVS--------LIGSHNHANL-LAAMALV-YAVGVDKQVMANVARTFTGLS 301
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFGYSGVL--- 311
HR ++V GVT+V+DSKATN+ AT L L H +++ GG K L
Sbjct: 302 HRCEVVGVK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFSPLEEP 360
Query: 312 IWK-----TLVNNGLSIPCFA-----VANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
+ K TL +G I V +M AV A ++AT+GD ++LSP CAS D +
Sbjct: 361 LTKVTHLITLGRDGNKIAALKEGAIKVDSMAAAVAKAAQLATSGDIVLLSPACASLDMYS 420
Query: 362 NFEHRGMVFQ 371
NF RG F+
Sbjct: 421 NFMARGDDFR 430
>TIGR_CMR|CPS_4467 [details] [associations]
symbol:CPS_4467 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:167879 "Colwellia psychrerythraea 34H" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0007049 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771
KO:K01925 OMA:RCGELDV GO:GO:0008764 PANTHER:PTHR23135:SF2
TIGRFAMs:TIGR01087 RefSeq:YP_271115.1 ProteinModelPortal:Q47VQ7
STRING:Q47VQ7 GeneID:3518421 KEGG:cps:CPS_4467 PATRIC:21471767
HOGENOM:HOG000049427 BioCyc:CPSY167879:GI48-4476-MONOMER
Uniprot:Q47VQ7
Length = 471
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 113/382 (29%), Positives = 185/382 (48%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSI---KILAVTGTNGKSTVVTFVGQMLNHLG 69
L + G+ L+ V+ +++ V I K+LAVTG+NGKSTVV+ + + +G
Sbjct: 87 LVSEGITALIPENCLVIGDVELFCLVNNSRISPMKMLAVTGSNGKSTVVSLLASLAKAIG 146
Query: 70 IEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ--VAVVEVSSYQMEIPNKYFCPTVSVVLN 127
+ A + GN+G P+ H + +S+ Q + +VE+SS+Q+E + SV LN
Sbjct: 147 VNAALAGNIGEPILNL-LHRENVYNSQLANQPDIVIVELSSFQLETLSSMHAIAASV-LN 204
Query: 128 LTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG 187
L+ DHL+RHKT+ NY K ++ K+ ++ +Q N + +
Sbjct: 205 LSDDHLDRHKTLANYQAIKQSIYPQ---AKIAVVSREDQASNTLVAAQEIISFGLNKPEQ 261
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
+A V G + + + + + G HN N +AAL+ LG G + A+
Sbjct: 262 DCFGLQAIDNKM-VMMFGEQALISIDELPLAGMHNALNY-MAALA-LGYSAGWSLSAMTE 318
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC---TGLMD-LKG-HKCVILLGGQ 302
+ HR Q V + + W++DSKATN+ AT TGL+ L G +K +++ GG
Sbjct: 319 NLAGFMGLAHRCQRVASE-DYIQWINDSKATNVGATLAAITGLVPTLTGQNKLILIAGGD 377
Query: 303 AKFG-YSGVL-IWK-------TLVNNGLSIPCFA-----VANMKDAVNHARRMATNGDAI 348
K +S + I TL +G I V +++AV A+++A GD +
Sbjct: 378 GKGADFSALTTILNCDVNQLITLGKDGAEIASLVSDAIQVDTLREAVEQAKQIAKPGDMV 437
Query: 349 VLSPGCASFDEFRNFEHRGMVF 370
+LSP CAS D F+N++ RG F
Sbjct: 438 LLSPACASIDMFKNYQVRGEQF 459
>TIGR_CMR|GSU_3071 [details] [associations]
symbol:GSU_3071 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:243231 "Geobacter sulfurreducens PCA" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0007049 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771
HOGENOM:HOG000049428 KO:K01925 OMA:RCGELDV GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 RefSeq:NP_954113.1
ProteinModelPortal:Q748D4 GeneID:2686310 KEGG:gsu:GSU3071
PATRIC:22028993 ProtClustDB:CLSK829090
BioCyc:GSUL243231:GH27-3020-MONOMER Uniprot:Q748D4
Length = 452
Score = 230 (86.0 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 51/139 (36%), Positives = 82/139 (58%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G+ V++E++ A++ I + ++A+TGTNGK+T T G++ G FVGGN+GNPL
Sbjct: 90 RAGREVITEIELASRFI--TAPLVAITGTNGKTTTTTLTGELFAGCGFRTFVGGNIGNPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
E L + VVE+SS+Q+E F PTV+V+LN+T DHL+R+ T + Y
Sbjct: 148 IE-------LVETGAAVDRVVVEISSFQLEWIRS-FRPTVAVLLNITEDHLDRYATYQEY 199
Query: 143 ALTKCHLFSHMVNTKLGLL 161
K +F + + +L
Sbjct: 200 IDAKARIFKNQTASDWAVL 218
Score = 149 (57.5 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 50/171 (29%), Positives = 80/171 (46%)
Query: 216 KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
++ G HN N +A+L+ L +G D + + +E PHRM++V R++ GV + +DS
Sbjct: 273 RITGVHNIENI-MASLAA-ALLLGCDADRALACVEAFGGLPHRMELV-RELNGVRYFEDS 329
Query: 276 KATNL---EATCTGLMDL--------KGHKCVILLGGQAKFGYSGVLIWKT---LVNN-G 320
KATN+ E D+ KG L G A+ +LI + + G
Sbjct: 330 KATNVGSVEKALASFNDITLIAGGKDKGGSYAPLAGLVAERVRHMILIGEAKDRMARELG 389
Query: 321 LSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
++DAV A + G ++ SP C+SFD FR++E R F+
Sbjct: 390 HLTDTRMAVTLEDAVELAASLTQPGGVVLFSPACSSFDMFRDYEERAQRFR 440
>UNIPROTKB|Q97RU8 [details] [associations]
symbol:murD "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00639 InterPro:IPR004101
InterPro:IPR005762 InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0007049
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0771 HOGENOM:HOG000049428 KO:K01925
OMA:RCGELDV ProtClustDB:PRK02472 GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 PIR:H95079
RefSeq:NP_345193.1 ProteinModelPortal:Q97RU8
EnsemblBacteria:EBSTRT00000027216 GeneID:930638 KEGG:spn:SP_0688
PATRIC:19705737 BindingDB:Q97RU8 ChEMBL:CHEMBL4359 Uniprot:Q97RU8
Length = 450
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 108/367 (29%), Positives = 176/367 (47%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDK---DTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFE 200
Y K ++ + M +L F NQ L + + A + F + K+D A +
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDG-AYLEDGQ 258
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+ G V + + + V G HN NA +A ++V L VD + + T+ HR+Q
Sbjct: 259 LYFRGEVV-MAANEIGVPGSHNVENA-LATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQ 315
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKT 315
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K
Sbjct: 316 FVD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKK 374
Query: 316 LVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
+V G S + ++ DA A +AT GD ++LSP AS+D + NF
Sbjct: 375 MVILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANF 434
Query: 364 EHRGMVF 370
E RG +F
Sbjct: 435 EVRGDLF 441
>TIGR_CMR|SPO_1187 [details] [associations]
symbol:SPO_1187 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0771 HOGENOM:HOG000049428 KO:K01925
OMA:RCGELDV GO:GO:0008764 PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087
RefSeq:YP_166434.1 ProteinModelPortal:Q5LU71 GeneID:3195454
KEGG:sil:SPO1187 PATRIC:23375679 ProtClustDB:PRK01390
Uniprot:Q5LU71
Length = 466
Score = 167 (63.8 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 57/166 (34%), Positives = 80/166 (48%)
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN+ NA A + L G+ +A+ + + PHR QIV + GVT+V+DSKAT
Sbjct: 296 GAHNHQNACAAYAACRAL--GLSPKAIEAGMRSYPGLPHRSQIV-AEAGGVTYVNDSKAT 352
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKFG----YSGVL--IWKTLVNN----G----LSIP 324
N++A L K + + GG K G +G L + K V G L +
Sbjct: 353 NVDAALKALGAFKRIRWIC--GGLQKEGGIAALNGGLAEVLKAYVIGREAAGFALQLEVE 410
Query: 325 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
M +AV A A GD ++L+P ASFD++ NFE RG F
Sbjct: 411 SEVCTTMDEAVARAMAEAEPGDTVLLAPAAASFDQYDNFERRGEDF 456
Score = 156 (60.0 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++AVTG+NGKST + +L+ G + GN+G + + P + V V
Sbjct: 121 RVVAVTGSNGKSTTSALIHHILSEAGRPVQLAGNIGRGVLDIE------PGEEGS--VVV 172
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
+E+SSYQ ++ + P V+V NL+PDHL+RH M Y K LF+
Sbjct: 173 LELSSYQTDLA-RALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFA 219
>TIGR_CMR|BA_4051 [details] [associations]
symbol:BA_4051 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:198094 "Bacillus anthracis str. Ames" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 RefSeq:NP_846291.1 RefSeq:YP_020693.1
RefSeq:YP_030014.1 ProteinModelPortal:Q81WC9 IntAct:Q81WC9
DNASU:1086094 EnsemblBacteria:EBBACT00000009521
EnsemblBacteria:EBBACT00000014653 EnsemblBacteria:EBBACT00000023364
GeneID:1086094 GeneID:2819652 GeneID:2850427 KEGG:ban:BA_4051
KEGG:bar:GBAA_4051 KEGG:bat:BAS3763 eggNOG:COG0771
HOGENOM:HOG000049428 KO:K01925 OMA:RCGELDV ProtClustDB:PRK02472
BioCyc:BANT260799:GJAJ-3821-MONOMER
BioCyc:BANT261594:GJ7F-3939-MONOMER GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 Uniprot:Q81WC9
Length = 450
Score = 266 (98.7 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 96/361 (26%), Positives = 164/361 (45%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+++E++ A ++ + +TG+NGK+T +ML + GN+G E A
Sbjct: 99 IVTEVELAYRI--SEAPFVGITGSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEVA- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+K +V V E+SS+Q+ + + F P ++ LNL HL+ H T K Y L K
Sbjct: 156 -----QDAKEN-EVVVTELSSFQL-MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKA 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
++F + ++ + + + ++ K + A VV
Sbjct: 209 NIFKNQTENDYSVINADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKAEKVV 268
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
++ ++ + G+HN N +AA+S+ L +GV EA+ + ++ HR++ V I
Sbjct: 269 ---EVDDIVLPGQHNLENI-LAAMSIAKL-LGVSNEAITAVLKRFTGVKHRLEYV-TTIN 322
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTLVNNGLS 322
+ +DSKATN+ AT L V+L GG + LI K +V G +
Sbjct: 323 NRKFYNDSKATNMLATEKALSAFT-QPTVLLAGGLDRGNEFDDLIPYFKNVKAIVTFGQT 381
Query: 323 IPCF-------------AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 369
P +V + +AV A +T+GD I+LSP CAS+D+F+ FE RG +
Sbjct: 382 APKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILLSPACASWDQFKTFEERGDI 441
Query: 370 F 370
F
Sbjct: 442 F 442
>TIGR_CMR|CJE_0482 [details] [associations]
symbol:CJE_0482 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:195099 "Campylobacter jejuni RM1221" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524
GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 GO:GO:0007049
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0771 KO:K01925 GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 RefSeq:YP_178501.1
ProteinModelPortal:Q5HW34 STRING:Q5HW34 GeneID:3231243
KEGG:cjr:CJE0482 PATRIC:20042670 HOGENOM:HOG000103774 OMA:PPHRIEY
ProtClustDB:PRK03815 BioCyc:CJEJ195099:GJC0-492-MONOMER
Uniprot:Q5HW34
Length = 402
Score = 185 (70.2 bits), Expect = 7.4e-21, Sum P(3) = 7.4e-21
Identities = 48/155 (30%), Positives = 78/155 (50%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+Q K + SE DF ++P+S+ I +GTNGK+T +L+H+G A +GGN+G
Sbjct: 71 LIQKAKNLQSEYDFFYDIMPKSVWI---SGTNGKTTTTQMATHLLSHIG--AVMGGNVGT 125
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PL+E P ++ ++E SS+ + +K P + +L ++PDHL H +
Sbjct: 126 PLAEL----------NPYEKLWILETSSFTLHYTHKAK-PEIYALLPISPDHLSWHGSFD 174
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH 175
NY K + M + +LP + N K H
Sbjct: 175 NYVQDKLSVLKRMNECDVTILP--KIYANTPTKAH 207
Score = 83 (34.3 bits), Expect = 7.4e-21, Sum P(3) = 7.4e-21
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+ AVN + +LSP CAS D+F ++ RG VF+E
Sbjct: 356 LSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERGKVFKE 397
Score = 78 (32.5 bits), Expect = 7.4e-21, Sum P(3) = 7.4e-21
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 227 AVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC 284
A+ AL++ + LD + E LNS + ++++ + +D Q WV+D+KATN A
Sbjct: 238 AIMALAIEKILLDT-LSYELLNSFV----MEKNKLEEI-KDSQNRLWVNDTKATNESAVM 291
Query: 285 TGLMDLKGHKCVILLGGQAK 304
L K K +++GG K
Sbjct: 292 AALNRYKDKKIHLIIGGDDK 311
>UNIPROTKB|P14900 [details] [associations]
symbol:murD species:83333 "Escherichia coli K-12"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0008360 "regulation of cell shape" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0071555 "cell wall organization"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=IEA;IDA] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=IEA] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0007049
GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 EMBL:X55034 EMBL:M30807 EMBL:X51584
eggNOG:COG0771 KO:K01925 OMA:RCGELDV GO:GO:0008764
PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087 HOGENOM:HOG000049427
EMBL:X17609 PIR:S08396 RefSeq:NP_414630.1 RefSeq:YP_488393.1
PDB:1E0D PDB:1EEH PDB:1UAG PDB:2JFF PDB:2JFG PDB:2JFH PDB:2UAG
PDB:2UUO PDB:2UUP PDB:2VTD PDB:2VTE PDB:2WJP PDB:2X5O PDB:2XPC
PDB:2Y1O PDB:2Y66 PDB:2Y67 PDB:2Y68 PDB:3UAG PDB:4UAG PDBsum:1E0D
PDBsum:1EEH PDBsum:1UAG PDBsum:2JFF PDBsum:2JFG PDBsum:2JFH
PDBsum:2UAG PDBsum:2UUO PDBsum:2UUP PDBsum:2VTD PDBsum:2VTE
PDBsum:2WJP PDBsum:2X5O PDBsum:2XPC PDBsum:2Y1O PDBsum:2Y66
PDBsum:2Y67 PDBsum:2Y68 PDBsum:3UAG PDBsum:4UAG
ProteinModelPortal:P14900 SMR:P14900 DIP:DIP-10279N IntAct:P14900
MINT:MINT-1269366 PRIDE:P14900 EnsemblBacteria:EBESCT00000003340
EnsemblBacteria:EBESCT00000003341 EnsemblBacteria:EBESCT00000003342
EnsemblBacteria:EBESCT00000003343 EnsemblBacteria:EBESCT00000016281
GeneID:12932483 GeneID:944818 KEGG:ecj:Y75_p0087 KEGG:eco:b0088
PATRIC:32115281 EchoBASE:EB0615 EcoGene:EG10620
ProtClustDB:PRK03806 BioCyc:EcoCyc:UDP-NACMURALA-GLU-LIG-MONOMER
BioCyc:ECOL316407:JW0086-MONOMER
BioCyc:MetaCyc:UDP-NACMURALA-GLU-LIG-MONOMER SABIO-RK:P14900
BindingDB:P14900 ChEMBL:CHEMBL4732 EvolutionaryTrace:P14900
Genevestigator:P14900 Uniprot:P14900
Length = 438
Score = 253 (94.1 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 96/375 (25%), Positives = 166/375 (44%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L+ +G ++ +++ + I+A+TG+NGKSTV T VG+M G+ VGGN
Sbjct: 82 LSAAADAGIEIVGDIELFCR--EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN 139
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + ++ V+E+SS+Q+E + + +LN+T DH++R+
Sbjct: 140 IGLP---------ALMLLDDECELYVLELSSFQLETTSSLQA-VAATILNVTEDHMDRYP 189
Query: 138 T-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAK 195
++ Y K ++ N K+ ++ + L I+G G G ++ +
Sbjct: 190 FGLQQYRAAKLRIYE---NAKVCVVN-ADDALTMPIRGADERCVSFGVNMGDYHLNHQQG 245
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILR 253
V V L + MK+ G+HNY NA A+A GL ++AL + +
Sbjct: 246 ETWLRVKGEKV---LNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPH 302
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW 313
+ + H ++ + + + EA GL + G ++L G +S + +
Sbjct: 303 R--FEVVLEHNGVRWINDSKATNVGSTEAALNGL-HVDGTLHLLLGGDGKSADFSPLARY 359
Query: 314 KTLVN--------NGLSIPCFA--VANMKDAVNHARRMATN----GDAIVLSPGCASFDE 359
N +G + VA + + A R+ GD ++LSP CAS D+
Sbjct: 360 LNGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQ 419
Query: 360 FRNFEHRGMVFQELA 374
F+NFE RG F LA
Sbjct: 420 FKNFEQRGNEFARLA 434
>TIGR_CMR|CBU_0131 [details] [associations]
symbol:CBU_0131 "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:227377 "Coxiella burnetii RSA 493" [GO:0008764
"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00639 InterPro:IPR004101 InterPro:IPR005762
InterPro:IPR013221 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
InterPro:IPR016040 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 GO:GO:0007049 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771
KO:K01925 OMA:RCGELDV GO:GO:0008764 PANTHER:PTHR23135:SF2
TIGRFAMs:TIGR01087 HOGENOM:HOG000049427 RefSeq:NP_819181.1
ProteinModelPortal:Q83F20 PRIDE:Q83F20 GeneID:1208002
KEGG:cbu:CBU_0131 PATRIC:17928945 ProtClustDB:PRK03803
BioCyc:CBUR227377:GJ7S-134-MONOMER Uniprot:Q83F20
Length = 442
Score = 225 (84.3 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 98/375 (26%), Positives = 166/375 (44%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
GK ++ +++ A+ + + I +A+TG+NGK+TV T VG M+ G V GN+G P+ E
Sbjct: 90 GKSIIGDIELFARNVNKPI--IAITGSNGKTTVTTVVGLMMKAAGRNVSVCGNIGEPVLE 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ +P + V +E+SS+Q+E + +LN++ DH+ R+ T+++Y
Sbjct: 148 QI-------TPEPDYYV--LELSSFQLETTFS-LRSQAATILNISEDHMNRYATLQDYLR 197
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--GAFPGVKIDTEAKTASFEVP 202
K +++ +P N E + FN + G +
Sbjct: 198 AKQRIYTDC------FIPIVNADEPEIWRHLPFNKKPLSFGLNNAADFSLAEHNQKTSIA 251
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVA-ALSVLG-------LDIGVDVEALNSTIEILRT 254
G + + + +K+ RH+ NA A AL L + D + + +R
Sbjct: 252 YQGKIL-MPIQELKLNARHHLQNALAALALGTAAKIPIENMLHVLRDFSGIRHRCQWVRK 310
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVL--I 312
++ + D +G T V ++A +E+ G KG + +++ GGQ K L +
Sbjct: 311 --YKEIDYYNDSKG-TNVGATRAA-IESL--G-QAAKG-QLILIAGGQGKGADFSPLKDV 362
Query: 313 WKTLVNN----GLSIPCF-------AVANMKDAVNHARRMATN----GDAIVLSPGCASF 357
K V G P V D++N A + +T GD ++LSP CASF
Sbjct: 363 VKRYVKQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLLSPACASF 422
Query: 358 DEFRNFEHRGMVFQE 372
D F N+EHRG VF E
Sbjct: 423 DMFTNYEHRGDVFTE 437
>UNIPROTKB|O06222 [details] [associations]
symbol:murD "UDP-N-acetylmuramoylalanine--D-glutamate
ligase" species:1773 "Mycobacterium tuberculosis" [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00639
InterPro:IPR004101 InterPro:IPR005762 InterPro:IPR013221
Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040
GO:GO:0005829 GO:GO:0005524 GO:GO:0040007 GO:GO:0051301
GO:GO:0008360 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR Gene3D:3.40.50.720 EMBL:BX842578
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0771 KO:K01925
OMA:RCGELDV GO:GO:0008764 PANTHER:PTHR23135:SF2 TIGRFAMs:TIGR01087
PIR:G70579 RefSeq:NP_216671.2 RefSeq:NP_336684.1
RefSeq:YP_006515574.1 ProteinModelPortal:O06222 SMR:O06222
PRIDE:O06222 EnsemblBacteria:EBMYCT00000002163
EnsemblBacteria:EBMYCT00000072997 GeneID:13316966 GeneID:888000
GeneID:924248 KEGG:mtc:MT2214 KEGG:mtu:Rv2155c KEGG:mtv:RVBD_2155c
PATRIC:18126626 TubercuList:Rv2155c HOGENOM:HOG000049429
ProtClustDB:PRK03369 BioCyc:MetaCyc:MONOMER-15225 Uniprot:O06222
Length = 486
Score = 129 (50.5 bits), Expect = 7.3e-16, Sum P(3) = 7.3e-16
Identities = 39/113 (34%), Positives = 57/113 (50%)
Query: 40 PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKF 99
PRS L VTGTNGK+T + + ML G A + GN+G+ A + P+
Sbjct: 112 PRSW--LVVTGTNGKTTTTSMLHAMLIAGGRRAVLCGNIGS----AVLDVLDEPA----- 160
Query: 100 QVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
++ VE+SS+Q+ P+ P VLN+ DHL+ H TM Y K + +
Sbjct: 161 ELLAVELSSFQLHWAPS--LRPEAGAVLNIAEDHLDWHATMAEYTAAKARVLT 211
Score = 95 (38.5 bits), Expect = 7.3e-16, Sum P(3) = 7.3e-16
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 329 ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
A M AV ARRMA GD ++L+P ASFD+F + RG F
Sbjct: 436 AVMTAAVAAARRMAQPGDTVLLAPAGASFDQFTGYADRGEAF 477
Score = 88 (36.0 bits), Expect = 7.3e-16, Sum P(3) = 7.3e-16
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 227 AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTG 286
A+AA + L +GV A+ + R HR ++V G+T+VDDSKATN A
Sbjct: 284 ALAA-AALARSVGVPAGAIADAVTSFRVGRHRAEVV-AVADGITYVDDSKATNPHAARAS 341
Query: 287 LMDLKGHKCVILLGGQAK 304
++ + V + GG K
Sbjct: 342 VLAYP--RVVWIAGGLLK 357
>UNIPROTKB|P11880 [details] [associations]
symbol:murF species:83333 "Escherichia coli K-12"
[GO:0047480 "UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine
ligase activity" evidence=IEA;IDA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0008766
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
-D-alanine ligase activity" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0008360 "regulation of cell shape"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0071555
"cell wall organization" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0009252 "peptidoglycan biosynthetic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005863 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 EMBL:X55034 EMBL:X15432 EMBL:U67891
EMBL:U67893 PIR:F64730 RefSeq:NP_414628.1 RefSeq:YP_488391.1
PDB:1GG4 PDBsum:1GG4 ProteinModelPortal:P11880 SMR:P11880
DIP:DIP-10281N IntAct:P11880 MINT:MINT-1227223 PRIDE:P11880
EnsemblBacteria:EBESCT00000003335 EnsemblBacteria:EBESCT00000003336
EnsemblBacteria:EBESCT00000003337 EnsemblBacteria:EBESCT00000003338
EnsemblBacteria:EBESCT00000015539 GeneID:12932648 GeneID:944813
KEGG:ecj:Y75_p0085 KEGG:eco:b0086 PATRIC:32115277 EchoBASE:EB0617
EcoGene:EG10622 eggNOG:COG0770 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI ProtClustDB:PRK10773
BioCyc:EcoCyc:UDP-NACMURALGLDAPAALIG-MONOMER
BioCyc:ECOL316407:JW0084-MONOMER
BioCyc:MetaCyc:UDP-NACMURALGLDAPAALIG-MONOMER SABIO-RK:P11880
BindingDB:P11880 ChEMBL:CHEMBL2540 EvolutionaryTrace:P11880
Genevestigator:P11880 GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 Uniprot:P11880
Length = 452
Score = 172 (65.6 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 69/284 (24%), Positives = 130/284 (45%)
Query: 37 QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSK 96
Q +P +++A+TG++GK++V +L+ G + GNL N + + L
Sbjct: 96 QQVPA--RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVP----MTLLRLT 149
Query: 97 PKFQVAVVEV-SSYQMEIPNKYFC--PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
P++ AV+E+ +++Q EI P ++V NL HLE ++ A K +FS +
Sbjct: 150 PEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGL 209
Query: 154 VNTKLGLLPFGNQH-LN-EAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQ 211
+ ++ N LN +++ G R W F +++ + V + G LQ
Sbjct: 210 PENGIAIMNADNNDWLNWQSVIGSR--KVW--RFSPNAANSDFTATNIHVTSHGTEFTLQ 265
Query: 212 LHN------MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
+ + GRHN NA AA L + +G ++A+ + + L+ P R+ +
Sbjct: 266 TPTGSVDVLLPLPGRHNIANALAAA--ALSMSVGATLDAIKAGLANLKAVPGRLFPIQL- 322
Query: 266 IQGVTWVDDSKATN---LEATCTGLMDLKGHKCVILLGGQAKFG 306
+ +DDS N + A L ++ G++ V+++G A+ G
Sbjct: 323 AENQLLLDDSYNANVGSMTAAVQVLAEMPGYR-VLVVGDMAELG 365
>TIGR_CMR|BA_4053 [details] [associations]
symbol:BA_4053
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase"
species:198094 "Bacillus anthracis str. Ames" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] HAMAP:MF_00208
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005761
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0007049 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 HOGENOM:HOG000268118 RefSeq:NP_846293.1
RefSeq:YP_020695.1 RefSeq:YP_030016.1 ProteinModelPortal:Q81WC7
DNASU:1086243 EnsemblBacteria:EBBACT00000008767
EnsemblBacteria:EBBACT00000016254 EnsemblBacteria:EBBACT00000023692
GeneID:1086243 GeneID:2815156 GeneID:2848185 KEGG:ban:BA_4053
KEGG:bar:GBAA_4053 KEGG:bat:BAS3765 eggNOG:COG0769 KO:K01928
OMA:MAKDNGA ProtClustDB:PRK00139
BioCyc:BANT260799:GJAJ-3823-MONOMER
BioCyc:BANT261594:GJ7F-3941-MONOMER GO:GO:0008765
TIGRFAMs:TIGR01085 Uniprot:Q81WC7
Length = 491
Score = 161 (61.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 71/285 (24%), Positives = 128/285 (44%)
Query: 43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH-------CIALPSS 95
+ ++ +TGTNGK+T + +++ G + + G + + + F + L +
Sbjct: 101 LHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQT 160
Query: 96 KPKF-----QVAVVEVSSYQMEIPNKYFCP-TVSVVLNLTPDHLERHKTMKNYALTKCHL 149
K V+EVSS+ +++ + C V+V NLT DHL+ HKTM+ Y K L
Sbjct: 161 FAKMVEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLL 220
Query: 150 FSHMVNT-KLGLLPFGNQHLNEAIKGH--RFNLAWIGAFPGVKIDTEAKTASFEVPAVG- 205
F+ + N+ + + ++A+ R A + + G+ ++ + + G
Sbjct: 221 FAQLGNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTY-GIDTTSDVMAKDIAMTSGGT 279
Query: 206 ---VVSQLQLHN--MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+V+ + N MK++G+ N +N V A + GL GV +E + I+ L P R +
Sbjct: 280 TFTLVTPYESVNVTMKLIGKFNVYN--VLAATAAGLVSGVSLETIIDVIKELAGVPGRFE 337
Query: 261 IVHRDIQGVTWVDDSKAT--NLEATC-TGLMDLKGHK-CVILLGG 301
+V Q T + D T +LE T KG C++ GG
Sbjct: 338 VVDGG-QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGG 381
Score = 39 (18.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 328 VANMKDAVNHARRMATNGDAIVLS 351
+ + K+A++HA A D I+++
Sbjct: 433 IIDRKEAIHHAITKAKADDIIIIA 456
>TIGR_CMR|GSU_3074 [details] [associations]
symbol:GSU_3074
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008765
"UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
activity" evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] HAMAP:MF_00208 InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005761 InterPro:IPR013221
Pfam:PF01225 Pfam:PF02875 Pfam:PF08245 UniPathway:UPA00219
GO:GO:0005524 GO:GO:0005737 GO:GO:0051301 GO:GO:0008360
GO:GO:0007049 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 HOGENOM:HOG000268118 eggNOG:COG0769 KO:K01928
ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085
RefSeq:NP_954115.1 HSSP:P22188 ProteinModelPortal:Q748D2
GeneID:2686302 KEGG:gsu:GSU3074 PATRIC:22029001 OMA:RPLMGEA
BioCyc:GSUL243231:GH27-3031-MONOMER Uniprot:Q748D2
Length = 509
Score = 163 (62.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 77/286 (26%), Positives = 129/286 (45%)
Query: 43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----GNPLSEAAF---HCIALPSS 95
+ ++ +TGTNGK+T V +++ GI A V G + G+ L A + L ++
Sbjct: 103 VPVVGITGTNGKTTTTYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQAT 162
Query: 96 KPKF-----QVAVVEVSSYQMEIPNKYFCP-TVSVVLNLTPDHLERHKTMKNYALTKCHL 149
+ V+EVSS+ +E C V+V NLT DHL+ H+ M++Y +K L
Sbjct: 163 IRDLVDEGAKAVVMEVSSHALEQRRVDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARL 222
Query: 150 FSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----GVKIDT--EAKTASFEVPA 203
F+ +V G+ P +N + L P G+ D A+ F V
Sbjct: 223 FTELVAPD-GVKPRRAAAINRD-DSYGARLVETAVAPVISYGLAADAAVRAENVVFSVDG 280
Query: 204 VG--VVSQL---QLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ +V+ H+ ++GR N +N AAVAA LGL + V + + + + P
Sbjct: 281 IAGTLVTPFGTAPFHS-HLLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRV----P 335
Query: 257 HRMQIVHRDIQGVTWVDDSKATN--LEATCTGLMDLKGHKCVILLG 300
R++ VH + +GVT + D T LE + +L + + + G
Sbjct: 336 GRLERVHNE-RGVTVLVDYAHTGDALENVLKTVSELATGRIITVFG 380
Score = 37 (18.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 317 VNNGLSIPCF-AVANMKDAVNHARRMATNGDAIVLS 351
+N G F ++ + DA+ A +A GD ++L+
Sbjct: 440 LNRGFVEKGFTSLVSRHDAIRLAATVAVAGDIVLLA 475
>TIGR_CMR|CPS_4469 [details] [associations]
symbol:CPS_4469
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] [GO:0047480
"UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
activity" evidence=ISS] InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005863 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 GO:GO:0007049 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0770
HOGENOM:HOG000268120 KO:K01929 GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 RefSeq:YP_271117.1
ProteinModelPortal:Q47VQ5 STRING:Q47VQ5 GeneID:3520386
KEGG:cps:CPS_4469 PATRIC:21471771 OMA:CINLALF
BioCyc:CPSY167879:GI48-4478-MONOMER Uniprot:Q47VQ5
Length = 513
Score = 136 (52.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 77/321 (23%), Positives = 133/321 (41%)
Query: 6 LFLLEFQLKA-TGLACLLQSGKRVMSELDFAAQVIPRSI--KILAVTGTNGKSTVVTFVG 62
L +++ L A T A L+ S R+ L A + + + K + +TG++GK+TV V
Sbjct: 77 LLIVDHHLSAVTDTAQLIVSDTRIA--LGKIAAFVKKEVAPKTVGITGSSGKTTVKEMVA 134
Query: 63 QMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM-EIP--NKYFC 119
+L+ LG GN N + + L +S AV+E+ + M EI
Sbjct: 135 AILSRLGKVLATNGNFNNDIG-VPLTLLRLDNSH---DFAVIEMGANHMGEIAYTTALTQ 190
Query: 120 PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFN 178
P V+V+ N+ HLE + A K +FS + + L N+ K R
Sbjct: 191 PDVAVINNIAAAHLEGFGDLCGVARAKGEIFSGLGENGVALY---NKDTKYTSKWQWRLT 247
Query: 179 LAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQ------LHNMKVMGRHNYHNAAVAAL 231
+ F V K + ++ S + + LQ + + V G+HN NA AA
Sbjct: 248 DKTVRTFSCVNKANCYSEKVSLDKNGCASFT-LQSEQGSCVMTLTVPGKHNVCNAVAAA- 305
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ----GVTWVDDSKATNLEATCTGL 287
+ L+ G +E + + ++ R+ + + + V +DDS NLE+
Sbjct: 306 -AIALEFGASLEDIQLGLAQMQPVKGRLNLHQLENKKTGCNVKLIDDSYNANLESAKAAA 364
Query: 288 MDLKGH--KCVILLGGQAKFG 306
L + K +++LG + G
Sbjct: 365 QLLSSYPGKQLLILGDMGELG 385
>UNIPROTKB|Q9KP37 [details] [associations]
symbol:VC_2542
"UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
e ligase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] [GO:0016881 "acid-amino acid ligase activity"
evidence=ISS] InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005757 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 InterPro:IPR016040 GO:GO:0005524 Gene3D:3.40.50.720
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0016881 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 KO:K02558 OMA:PYTSGPQ PANTHER:PTHR23135:SF8
TIGRFAMs:TIGR01081 HSSP:P45066 PIR:H82063 RefSeq:NP_232170.1
ProteinModelPortal:Q9KP37 DNASU:2615559 GeneID:2615559
KEGG:vch:VC2542 PATRIC:20084107 ProtClustDB:CLSK874840
Uniprot:Q9KP37
Length = 451
Score = 135 (52.6 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 77/268 (28%), Positives = 118/268 (44%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEAAFHCIALPSSKPKFQVA 102
++AV+GT+GK+T + + +L H G + VGG LGN F A F V
Sbjct: 105 VIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGN------FGISARLGESMFFVVE 158
Query: 103 VVEVSSYQMEIPNKY--FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
E S + +K+ + P V+ NL DH + ++ A+ + F H+V T G
Sbjct: 159 ADEYDSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLE--AIKR--QFHHLVRTVPGN 214
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGA-FPGVKIDTEAK--TAS---FEVPAVGV-VSQLQLH 213
+EA+ W F G + + +A+ TA F V G V Q+
Sbjct: 215 GRILAPKQDEALADVLQRGCWSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--- 271
Query: 214 NMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
N ++G HN NA A+AA +G+ + EAL + R R+++ +I GVT
Sbjct: 272 NWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKR----RLEL-KGEINGVTV 326
Query: 272 VDD--SKATNLEATCTGLMDLKGHKCVI 297
DD T +E T GL + G K +I
Sbjct: 327 YDDFAHHPTAIELTLGGLRNKVGDKKII 354
>TIGR_CMR|VC_2542 [details] [associations]
symbol:VC_2542
"UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
e ligase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005757
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
InterPro:IPR016040 GO:GO:0005524 Gene3D:3.40.50.720 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016881 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 KO:K02558 OMA:PYTSGPQ PANTHER:PTHR23135:SF8
TIGRFAMs:TIGR01081 HSSP:P45066 PIR:H82063 RefSeq:NP_232170.1
ProteinModelPortal:Q9KP37 DNASU:2615559 GeneID:2615559
KEGG:vch:VC2542 PATRIC:20084107 ProtClustDB:CLSK874840
Uniprot:Q9KP37
Length = 451
Score = 135 (52.6 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 77/268 (28%), Positives = 118/268 (44%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGNPLSEAAFHCIALPSSKPKFQVA 102
++AV+GT+GK+T + + +L H G + VGG LGN F A F V
Sbjct: 105 VIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGN------FGISARLGESMFFVVE 158
Query: 103 VVEVSSYQMEIPNKY--FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
E S + +K+ + P V+ NL DH + ++ A+ + F H+V T G
Sbjct: 159 ADEYDSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLE--AIKR--QFHHLVRTVPGN 214
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGA-FPGVKIDTEAK--TAS---FEVPAVGV-VSQLQLH 213
+EA+ W F G + + +A+ TA F V G V Q+
Sbjct: 215 GRILAPKQDEALADVLQRGCWSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--- 271
Query: 214 NMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
N ++G HN NA A+AA +G+ + EAL + R R+++ +I GVT
Sbjct: 272 NWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKR----RLEL-KGEINGVTV 326
Query: 272 VDD--SKATNLEATCTGLMDLKGHKCVI 297
DD T +E T GL + G K +I
Sbjct: 327 YDDFAHHPTAIELTLGGLRNKVGDKKII 354
>TIGR_CMR|SO_4224 [details] [associations]
symbol:SO_4224
"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
ligase" species:211586 "Shewanella oneidensis MR-1" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] HAMAP:MF_00208
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005761
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268118 eggNOG:COG0769
KO:K01928 ProtClustDB:PRK00139 TIGRFAMs:TIGR01085
RefSeq:NP_719752.2 ProteinModelPortal:Q8E9P3 GeneID:1171828
KEGG:son:SO_4224 PATRIC:23528086 OMA:GMDMRAL Uniprot:Q8E9P3
Length = 491
Score = 135 (52.6 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 76/246 (30%), Positives = 109/246 (44%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL-------SEAAFHCIALPSSKP 97
I+ +TGTNGK++ Q++ L +A V G LGN L I L
Sbjct: 109 IVGITGTNGKTSTSQLCAQLVTLLSGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLH 168
Query: 98 KF-----QVAVVEVSSYQMEIPNKYFCP-TVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
+F +EVSS+ + P V+V NLT DHL+ H M+NYA K LF
Sbjct: 169 EFANKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLF- 227
Query: 152 HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV--KI---DTEA-KTASFEVPAV- 204
+ + GLL +L++ I G AW+ V KI EA K A+F V
Sbjct: 228 RFDSLRHGLL-----NLDDPIGG-----AWLAELKNVPAKIWGFSIEAHKAAAFYTKNVR 277
Query: 205 ----GVVSQL-----QLH-NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
GV + L ++ + ++G N N +AALS L L G+D+ AL + + L
Sbjct: 278 FNDQGVQATLVWPEGEIDISSPLLGAFNLSNL-LAALSALYLQ-GMDMRALAAKVPYLVP 335
Query: 255 PPHRMQ 260
RM+
Sbjct: 336 VAGRME 341
>UNIPROTKB|Q9X6N4 [details] [associations]
symbol:murE
"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] [GO:0016881 "acid-amino acid ligase activity"
evidence=ISS] HAMAP:MF_00208 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005761 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0007049 GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0769
KO:K01928 ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085
OMA:HTMEEYA EMBL:AF141867 PIR:B82082 RefSeq:NP_232036.1
ProteinModelPortal:Q9X6N4 SMR:Q9X6N4 DNASU:2613075 GeneID:2613075
KEGG:vch:VC2406 PATRIC:20083833 Uniprot:Q9X6N4
Length = 495
Score = 135 (52.6 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 69/260 (26%), Positives = 110/260 (42%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN-------PLSEAAFHCIALPSSK 96
+++ VTGTNGK+T+ + Q L LG +A V G GN P + + + + ++
Sbjct: 113 QLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATL 172
Query: 97 PKF-----QVAVVEVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCH 148
Q +E SS+ Q + +F V NL+ DHL+ H TM+ YA K
Sbjct: 173 RDLAERGAQYTALETSSHGLVQGRVKKLHF--VAGVFSNLSRDHLDYHGTMEAYAAAKFS 230
Query: 149 LFS-HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---GVKIDTEAKTAS--FEVP 202
LFS H + ++++A+ W+ P GV + T+ TA +
Sbjct: 231 LFSEHACQNAI-------INVDDAVGAQ-----WVKQLPQAIGVSLVTKPNTAQAIWARE 278
Query: 203 AVGVVSQLQLHNMKVMGRHNYH-------NAA--VAALSVLGLDIGVDVEALNSTIEILR 253
S + L+ G H NA + AL+ L L +G + AL +T LR
Sbjct: 279 VAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATL-LSLGFEKSALLATAPKLR 337
Query: 254 TPPHRMQIVHRDIQGVTWVD 273
RM++ R+ + VD
Sbjct: 338 PVLGRMELFQREQKAKMVVD 357
>TIGR_CMR|VC_2406 [details] [associations]
symbol:VC_2406
"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
ligase" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] HAMAP:MF_00208
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005761
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0769 KO:K01928
ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085 OMA:HTMEEYA
EMBL:AF141867 PIR:B82082 RefSeq:NP_232036.1
ProteinModelPortal:Q9X6N4 SMR:Q9X6N4 DNASU:2613075 GeneID:2613075
KEGG:vch:VC2406 PATRIC:20083833 Uniprot:Q9X6N4
Length = 495
Score = 135 (52.6 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 69/260 (26%), Positives = 110/260 (42%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN-------PLSEAAFHCIALPSSK 96
+++ VTGTNGK+T+ + Q L LG +A V G GN P + + + + ++
Sbjct: 113 QLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATL 172
Query: 97 PKF-----QVAVVEVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCH 148
Q +E SS+ Q + +F V NL+ DHL+ H TM+ YA K
Sbjct: 173 RDLAERGAQYTALETSSHGLVQGRVKKLHF--VAGVFSNLSRDHLDYHGTMEAYAAAKFS 230
Query: 149 LFS-HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---GVKIDTEAKTAS--FEVP 202
LFS H + ++++A+ W+ P GV + T+ TA +
Sbjct: 231 LFSEHACQNAI-------INVDDAVGAQ-----WVKQLPQAIGVSLVTKPNTAQAIWARE 278
Query: 203 AVGVVSQLQLHNMKVMGRHNYH-------NAA--VAALSVLGLDIGVDVEALNSTIEILR 253
S + L+ G H NA + AL+ L L +G + AL +T LR
Sbjct: 279 VAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATL-LSLGFEKSALLATAPKLR 337
Query: 254 TPPHRMQIVHRDIQGVTWVD 273
RM++ R+ + VD
Sbjct: 338 PVLGRMELFQREQKAKMVVD 357
>TIGR_CMR|CHY_2068 [details] [associations]
symbol:CHY_2068 "UDP-N-acetylmuramate--alanine ligase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008763 "UDP-N-acetylmuramate-L-alanine ligase activity"
evidence=ISS] [GO:0009252 "peptidoglycan biosynthetic process"
evidence=ISS] HAMAP:MF_00046 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005758 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 InterPro:IPR016040
InterPro:IPR001357 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 Gene3D:3.40.50.720 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0007049 GO:GO:0009252 SMART:SM00292
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 eggNOG:COG0773 KO:K01924 GO:GO:0008763
PANTHER:PTHR23135:SF5 TIGRFAMs:TIGR01082 HOGENOM:HOG000256031
OMA:YQPHRYS RefSeq:YP_360887.1 ProteinModelPortal:Q3AAE7
STRING:Q3AAE7 GeneID:3727737 KEGG:chy:CHY_2068 PATRIC:21277217
BioCyc:CHYD246194:GJCN-2067-MONOMER Uniprot:Q3AAE7
Length = 464
Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 61/264 (23%), Positives = 116/264 (43%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G VM + A+++ K +AV GT+GK+T + + +L G + + +G + +
Sbjct: 99 GIPVMHRGELLARLMQEK-KGIAVAGTHGKTTTSSMIAYVLEKEGFDPVIA--VGGEIVD 155
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
++ A + ++ VA + S P +V+ N+ DHL+ +++ +
Sbjct: 156 LGYNAKA---GQGEYMVAEADESDGSF----LKLLPYAAVITNIEADHLDYYQSFEEIKK 208
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG--VKIDTEAKTASFEVP 202
++ G+ + N + E +KG++ G PG + + + V
Sbjct: 209 AFKKFADNIRPEGFGVFCWDNLQVREMLKGYKKRKFTYGFSPGSDFMLRDYREEQNQLVA 268
Query: 203 AVGVVSQLQLH-NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + L+ +KV G+HN NAA AA +VL +IG+ +A++ + R QI
Sbjct: 269 NIYYKNTLEGELRLKVPGKHNILNAA-AATAVLR-NIGLSFKAISERLLEFNGAKRRFQI 326
Query: 262 VHRDIQGVTWVDD--SKATNLEAT 283
+ + G VDD T +EAT
Sbjct: 327 LG-ERNGALIVDDYAHHPTEVEAT 349
>UNIPROTKB|P0A5L4 [details] [associations]
symbol:murF
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005863 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0051301 GO:GO:0008360 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842578
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 eggNOG:COG0770 HOGENOM:HOG000268120
KO:K01929 OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766
PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 PIR:A70580
RefSeq:NP_216673.1 RefSeq:NP_336686.1 RefSeq:YP_006515576.1
ProteinModelPortal:P0A5L4 SMR:P0A5L4 PRIDE:P0A5L4
EnsemblBacteria:EBMYCT00000003752 EnsemblBacteria:EBMYCT00000072617
GeneID:13316968 GeneID:887826 GeneID:924245 KEGG:mtc:MT2216
KEGG:mtu:Rv2157c KEGG:mtv:RVBD_2157c PATRIC:18126630
TubercuList:Rv2157c ProtClustDB:CLSK791663
BioCyc:MetaCyc:MONOMER-15227 Uniprot:P0A5L4
Length = 510
Score = 130 (50.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 74/297 (24%), Positives = 129/297 (43%)
Query: 8 LLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNH 67
+LE +G A L K + AAQ++ + I+ +TG++GK++ + +L
Sbjct: 97 VLEHDNDGSGAAVLAALAKLATA---VAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAP 153
Query: 68 LGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS-YQMEIPN--KYFCPTVSV 124
LG G+ N L H + + + ++E+++ + I + P++ V
Sbjct: 154 LGEVVAPPGSFNNELG----HPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGV 209
Query: 125 VLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQ------HLNEA--IKGHR 176
VLN+ HL + + A TK L + ++ +L + L A ++ R
Sbjct: 210 VLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSR 269
Query: 177 FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236
N + A P V +D A+ F + A ++++L V G H NA AA + L
Sbjct: 270 DNTGDVWAGP-VSLDELARPR-FTLHAHDAQAEVRLG---VCGDHQVTNALCAA--AVAL 322
Query: 237 DIGVDVEALNSTIEILRTPP---HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290
+ G VE + + + PP HRMQ+ R GVT +DD+ N ++ GL L
Sbjct: 323 ECGASVEQVAAALTA--APPVSRHRMQVTTRG-DGVTVIDDAYNANPDSMRAGLQAL 376
>TIGR_CMR|CBU_0124 [details] [associations]
symbol:CBU_0124
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:227377 "Coxiella burnetii RSA 493"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268120 KO:K01929
OMA:GNRNNEI GO:GO:0047480 GO:GO:0008766 PANTHER:PTHR23135:SF3
TIGRFAMs:TIGR01143 HSSP:P11880 RefSeq:NP_819174.1
ProteinModelPortal:Q83F27 GeneID:1207995 KEGG:cbu:CBU_0124
PATRIC:17928933 ProtClustDB:CLSK913851
BioCyc:CBUR227377:GJ7S-129-MONOMER Uniprot:Q83F27
Length = 446
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 69/291 (23%), Positives = 120/291 (41%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQML----NHLGIEAFVGGNLGNPLSEAAFHC 89
+ + IP I + VTG+ GK+T + + N L E N+G PL+
Sbjct: 91 YQREQIP--IPAIVVTGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLT------ 142
Query: 90 IALPSSKPKFQVAVVEV-SSYQMEIP--NKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
L +P AV+E+ +++ EI P+V+++ N P HLE +++ A K
Sbjct: 143 --LLRLRPDHHYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAK 200
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIK--GHRFNLAWIGAFPGVKIDTEAKTASFEV--- 201
+F + + ++ + H E + H + G D AK +
Sbjct: 201 GEIFEGLSSDGTAVIN-NDDHFAEFWRRLAHSRRIISFGI--NQPADVMAKNITLNSDGR 257
Query: 202 PAVGVV---SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
PA +V QL++ + ++G HN NA AA + + D A+ + +E + P
Sbjct: 258 PAFQLVLPTGQLEIQ-LPLIGVHNVANALAAAAAAYAQQLSTD--AIKAGLESV-VPVKG 313
Query: 259 MQIVHRDIQGVTWVDDSKATN---LEATCTGLMDLKGHKCVILLGGQAKFG 306
+ + +G +DDS N + A L GH V++LG + G
Sbjct: 314 RLVEQKGYRGAIIIDDSYNANPLSVSAAIAVLAKRPGHS-VLVLGDMLELG 363
>UNIPROTKB|Q0BXT7 [details] [associations]
symbol:murE
"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase" species:228405 "Hyphomonas neptunium ATCC 15444"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
HAMAP:MF_00208 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005761 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 GO:GO:0007049 GO:GO:0009252
EMBL:CP000158 GenomeReviews:CP000158_GR Gene3D:3.40.1190.10
Gene3D:3.90.190.20 SUPFAM:SSF53244 SUPFAM:SSF53623
HOGENOM:HOG000268118 eggNOG:COG0769 KO:K01928 GO:GO:0008765
TIGRFAMs:TIGR01085 OMA:HTMEEYA RefSeq:YP_761706.1 STRING:Q0BXT7
GeneID:4288249 KEGG:hne:HNE_3029 PATRIC:32218935
ProtClustDB:CLSK777713 BioCyc:HNEP228405:GI69-3035-MONOMER
Uniprot:Q0BXT7
Length = 478
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 44/143 (30%), Positives = 68/143 (47%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG--NPLSEAAF-HCIALPSSKPKFQV 101
++AVTGTNGKS+ V F Q+ + GI+A G LG P + H P + +
Sbjct: 96 VVAVTGTNGKSSTVDFARQIWSRAGIKAASMGTLGAIGPAGKVDIGHTTPDPVTVSETMK 155
Query: 102 AV---------VEVSSYQMEIPNKYFCPTVSVV--LNLTPDHLERHKTMKNYALTKCHLF 150
A+ +E SS+ +E ++ +S V LNLT DHL+ H TM+ Y K LF
Sbjct: 156 ALARQGVTHCAMEASSHGLE-QHRLDGVDLSAVAFLNLTQDHLDYHATMEAYLDAKVRLF 214
Query: 151 SHMVNTKLGLLPFGNQHLNEAIK 173
+ + + + EA++
Sbjct: 215 RDLAPRGIPAIVNADSDHREAVE 237
>UNIPROTKB|Q3AFG6 [details] [associations]
symbol:CHY_0246 "Mur ligase family protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR013221 Pfam:PF08245 GO:GO:0005524
GO:GO:0009058 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016874
Gene3D:3.40.1190.10 SUPFAM:SSF53623 eggNOG:COG0769
HOGENOM:HOG000245927 OMA:NYTAFQD InterPro:IPR013564 Pfam:PF08353
RefSeq:YP_359118.1 STRING:Q3AFG6 GeneID:3727726 KEGG:chy:CHY_0246
PATRIC:21273671 ProtClustDB:CLSK717826
BioCyc:CHYD246194:GJCN-247-MONOMER Uniprot:Q3AFG6
Length = 464
Score = 113 (44.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 43/169 (25%), Positives = 79/169 (46%)
Query: 39 IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA---FVGGNLGNPLSEAAFHCIALPSS 95
I + KI+ VTG+NGK+T +GQ+L GI + G NL + ++ A + +
Sbjct: 47 IALNFKIIVVTGSNGKTTTTRMIGQILKENGITFVTNYAGANLLSGIATALLQGVDVFGC 106
Query: 96 KPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMV 154
P V ++E+ ++ + P V VV N+ D L+R+ + + K + ++
Sbjct: 107 -PLVPVLLLEIDEATLKKVSTEISPEVLVVTNIFRDQLDRYGEVYQTLNYVKDGV-ANFK 164
Query: 155 NTKLGLLPFGNQHLNEAIKGHRFNLAWIG----AFPGVKIDTEAKTASF 199
NTKL +L + + K F + + G F ++ +T+A+ F
Sbjct: 165 NTKL-VLNADDSLVASLAKVKPFEVFYFGLDSEGFEDLQQNTDARYCLF 212
Score = 50 (22.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 214 NMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
N+ + G +N +N AA+ LGL++ +EAL++
Sbjct: 275 NLSLPGIYNIYNSLAALTCSQALGLNLKKSMEALST 310
>TIGR_CMR|CHY_0246 [details] [associations]
symbol:CHY_0246 "Mur ligase family protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR013221 Pfam:PF08245 GO:GO:0005524
GO:GO:0009058 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016874
Gene3D:3.40.1190.10 SUPFAM:SSF53623 eggNOG:COG0769
HOGENOM:HOG000245927 OMA:NYTAFQD InterPro:IPR013564 Pfam:PF08353
RefSeq:YP_359118.1 STRING:Q3AFG6 GeneID:3727726 KEGG:chy:CHY_0246
PATRIC:21273671 ProtClustDB:CLSK717826
BioCyc:CHYD246194:GJCN-247-MONOMER Uniprot:Q3AFG6
Length = 464
Score = 113 (44.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 43/169 (25%), Positives = 79/169 (46%)
Query: 39 IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA---FVGGNLGNPLSEAAFHCIALPSS 95
I + KI+ VTG+NGK+T +GQ+L GI + G NL + ++ A + +
Sbjct: 47 IALNFKIIVVTGSNGKTTTTRMIGQILKENGITFVTNYAGANLLSGIATALLQGVDVFGC 106
Query: 96 KPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMV 154
P V ++E+ ++ + P V VV N+ D L+R+ + + K + ++
Sbjct: 107 -PLVPVLLLEIDEATLKKVSTEISPEVLVVTNIFRDQLDRYGEVYQTLNYVKDGV-ANFK 164
Query: 155 NTKLGLLPFGNQHLNEAIKGHRFNLAWIG----AFPGVKIDTEAKTASF 199
NTKL +L + + K F + + G F ++ +T+A+ F
Sbjct: 165 NTKL-VLNADDSLVASLAKVKPFEVFYFGLDSEGFEDLQQNTDARYCLF 212
Score = 50 (22.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 214 NMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNS 247
N+ + G +N +N AA+ LGL++ +EAL++
Sbjct: 275 NLSLPGIYNIYNSLAALTCSQALGLNLKKSMEALST 310
>UNIPROTKB|Q9KPG3 [details] [associations]
symbol:VC_2405
"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 KO:K01929 OMA:GNRNNEI GO:GO:0047480
GO:GO:0008766 PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 HSSP:P11880
PIR:A82082 RefSeq:NP_232035.1 ProteinModelPortal:Q9KPG3
DNASU:2613074 GeneID:2613074 KEGG:vch:VC2405 PATRIC:20083831
ProtClustDB:CLSK874790 Uniprot:Q9KPG3
Length = 453
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 67/277 (24%), Positives = 116/277 (41%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+A+TG+ GK+TV V +L+ G + GN N + + L S + AV+E
Sbjct: 103 VAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNNDIGVP----LTLLRSTTEDDYAVIE 158
Query: 106 VSSYQM-EIP--NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+ + + EI P V++V N+ HLE +M K ++ + + ++
Sbjct: 159 LGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVN 218
Query: 163 F---GNQHLNEAIKGHR---FNLAWIGA--FP-GVKIDTEAKTASFE-VPAVGVVSQLQL 212
G + + F+ A +P V+++ ASF V VG V
Sbjct: 219 LDSNGGDYWKAVLADKTVKTFSATDHNADFYPRDVRLNALG-IASFTLVTPVGEVGV--- 274
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH-RDIQGVTW 271
+ +MG+HN NA AA L L++G + + + L R+ + RD +T
Sbjct: 275 -ELGIMGQHNVANALAAA--ALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRD--DITL 329
Query: 272 VDDSKATNLEATCTGLMDLKGHKCV--ILLGGQAKFG 306
+DDS ++ A + L V ++LG A+ G
Sbjct: 330 IDDSYNASVPAMKAAVELLGSFSAVRWLILGNMAELG 366
>TIGR_CMR|VC_2405 [details] [associations]
symbol:VC_2405
"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
l-D-alanyl ligase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005863
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0007049
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 KO:K01929 OMA:GNRNNEI GO:GO:0047480
GO:GO:0008766 PANTHER:PTHR23135:SF3 TIGRFAMs:TIGR01143 HSSP:P11880
PIR:A82082 RefSeq:NP_232035.1 ProteinModelPortal:Q9KPG3
DNASU:2613074 GeneID:2613074 KEGG:vch:VC2405 PATRIC:20083831
ProtClustDB:CLSK874790 Uniprot:Q9KPG3
Length = 453
Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
Identities = 67/277 (24%), Positives = 116/277 (41%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+A+TG+ GK+TV V +L+ G + GN N + + L S + AV+E
Sbjct: 103 VAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNNDIGVP----LTLLRSTTEDDYAVIE 158
Query: 106 VSSYQM-EIP--NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+ + + EI P V++V N+ HLE +M K ++ + + ++
Sbjct: 159 LGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVN 218
Query: 163 F---GNQHLNEAIKGHR---FNLAWIGA--FP-GVKIDTEAKTASFE-VPAVGVVSQLQL 212
G + + F+ A +P V+++ ASF V VG V
Sbjct: 219 LDSNGGDYWKAVLADKTVKTFSATDHNADFYPRDVRLNALG-IASFTLVTPVGEVGV--- 274
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH-RDIQGVTW 271
+ +MG+HN NA AA L L++G + + + L R+ + RD +T
Sbjct: 275 -ELGIMGQHNVANALAAA--ALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRD--DITL 329
Query: 272 VDDSKATNLEATCTGLMDLKGHKCV--ILLGGQAKFG 306
+DDS ++ A + L V ++LG A+ G
Sbjct: 330 IDDSYNASVPAMKAAVELLGSFSAVRWLILGNMAELG 366
>UNIPROTKB|Q83F28 [details] [associations]
symbol:murE
"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase" species:227377 "Coxiella burnetii RSA 493" [GO:0009252
"peptidoglycan biosynthetic process" evidence=ISS] [GO:0016881
"acid-amino acid ligase activity" evidence=ISS] HAMAP:MF_00208
InterPro:IPR000713 InterPro:IPR004101 InterPro:IPR005761
InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737 GO:GO:0051301
GO:GO:0008360 GO:GO:0007049 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0016881 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 HOGENOM:HOG000268118 eggNOG:COG0769
KO:K01928 ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085
RefSeq:NP_819173.1 ProteinModelPortal:Q83F28 GeneID:1207994
KEGG:cbu:CBU_0123 PATRIC:17928931 OMA:HTMEEYA
BioCyc:CBUR227377:GJ7S-128-MONOMER Uniprot:Q83F28
Length = 489
Score = 116 (45.9 bits), Expect = 0.00082, P = 0.00082
Identities = 48/165 (29%), Positives = 72/165 (43%)
Query: 43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG-------NPLSEAAFHCIALPSS 95
++I+ +TGTNGK++ F+ Q L GI V G LG + S I L +
Sbjct: 106 MEIIGITGTNGKTSCAQFIAQALQSQGIRCGVIGTLGYGFLGSLHKTSHTTPEPIQLQQA 165
Query: 96 -----KPKFQVAVVEVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
K + +EVSS+ Q + F ++V L+ DHL+ H M+NYA K
Sbjct: 166 FAEMRKQGAKAIAMEVSSHALHQRRVEGVQF--DIAVFTQLSRDHLDYHGDMENYARAKE 223
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG-AFPGVKID 191
LF G++ + I +R L +G + GVK D
Sbjct: 224 LLFQQP-GLHTGVVNCDDALGKRIIAHYRHQLTLVGYSANGVKDD 267
>TIGR_CMR|CBU_0123 [details] [associations]
symbol:CBU_0123 "UDP-N-acetylmuramoylalanyl-D-glutamate-2,
6-diaminopimelate ligase" species:227377 "Coxiella burnetii RSA
493" [GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS]
[GO:0016881 "acid-amino acid ligase activity" evidence=ISS]
HAMAP:MF_00208 InterPro:IPR000713 InterPro:IPR004101
InterPro:IPR005761 InterPro:IPR013221 Pfam:PF01225 Pfam:PF02875
Pfam:PF08245 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 GO:GO:0007049 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016881 GO:GO:0009252
Gene3D:3.40.1190.10 Gene3D:3.90.190.20 SUPFAM:SSF53244
SUPFAM:SSF53623 HOGENOM:HOG000268118 eggNOG:COG0769 KO:K01928
ProtClustDB:PRK00139 GO:GO:0008765 TIGRFAMs:TIGR01085
RefSeq:NP_819173.1 ProteinModelPortal:Q83F28 GeneID:1207994
KEGG:cbu:CBU_0123 PATRIC:17928931 OMA:HTMEEYA
BioCyc:CBUR227377:GJ7S-128-MONOMER Uniprot:Q83F28
Length = 489
Score = 116 (45.9 bits), Expect = 0.00082, P = 0.00082
Identities = 48/165 (29%), Positives = 72/165 (43%)
Query: 43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG-------NPLSEAAFHCIALPSS 95
++I+ +TGTNGK++ F+ Q L GI V G LG + S I L +
Sbjct: 106 MEIIGITGTNGKTSCAQFIAQALQSQGIRCGVIGTLGYGFLGSLHKTSHTTPEPIQLQQA 165
Query: 96 -----KPKFQVAVVEVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
K + +EVSS+ Q + F ++V L+ DHL+ H M+NYA K
Sbjct: 166 FAEMRKQGAKAIAMEVSSHALHQRRVEGVQF--DIAVFTQLSRDHLDYHGDMENYARAKE 223
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG-AFPGVKID 191
LF G++ + I +R L +G + GVK D
Sbjct: 224 LLFQQP-GLHTGVVNCDDALGKRIIAHYRHQLTLVGYSANGVKDD 267
>TIGR_CMR|CHY_2074 [details] [associations]
symbol:CHY_2074 "UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate ligase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0009252 "peptidoglycan biosynthetic
process" evidence=ISS] [GO:0016881 "acid-amino acid ligase
activity" evidence=ISS] HAMAP:MF_00208 InterPro:IPR000713
InterPro:IPR004101 InterPro:IPR005761 InterPro:IPR013221
InterPro:IPR018109 Pfam:PF01225 Pfam:PF02875 Pfam:PF08245
PROSITE:PS01011 UniPathway:UPA00219 GO:GO:0005524 GO:GO:0005737
GO:GO:0051301 GO:GO:0008360 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0007049 GO:GO:0009252 Gene3D:3.40.1190.10 Gene3D:3.90.190.20
SUPFAM:SSF53244 SUPFAM:SSF53623 GO:GO:0004326 HOGENOM:HOG000268118
eggNOG:COG0769 KO:K01928 GO:GO:0008765 TIGRFAMs:TIGR01085
OMA:HTMEEYA GO:GO:0046901 RefSeq:YP_360893.1
ProteinModelPortal:Q3AAE1 STRING:Q3AAE1 GeneID:3727837
KEGG:chy:CHY_2074 PATRIC:21277229
BioCyc:CHYD246194:GJCN-2073-MONOMER Uniprot:Q3AAE1
Length = 492
Score = 116 (45.9 bits), Expect = 0.00083, P = 0.00083
Identities = 41/130 (31%), Positives = 62/130 (47%)
Query: 43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN-------PLSEAAFHCIALP-- 93
I ++ VTGTNGK+TV V +L G + + G + N P++ ++L
Sbjct: 106 ISVIGVTGTNGKTTVTHLVTSLLESFGYKTGLIGTIYNRIGDKILPVTNTTPDALSLQRL 165
Query: 94 -SSKPKFQVAVV--EVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ K +V+ V EVSS+ Q + F V NLT DHL+ H++M+NY K
Sbjct: 166 FAEMVKSEVSHVAMEVSSHALVQKRVLGIDF--KTGVFTNLTQDHLDFHESMENYFNAKK 223
Query: 148 HLFSHMVNTK 157
LF + K
Sbjct: 224 ELFKILAEQK 233
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.136 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 377 377 0.00089 117 3 11 22 0.48 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 614 (65 KB)
Total size of DFA: 244 KB (2131 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 31.46u 0.07s 31.53t Elapsed: 00:00:27
Total cpu time: 31.47u 0.07s 31.54t Elapsed: 00:00:28
Start: Fri May 10 12:01:25 2013 End: Fri May 10 12:01:53 2013