BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017087
(377 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/392 (69%), Positives = 314/392 (80%), Gaps = 27/392 (6%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L++ GL+ LLQSGKRV+SELDFAA+++PRSIKILAVTGTNGKSTV TF GQML+HLGIE
Sbjct: 87 LESHGLSFLLQSGKRVLSELDFAAEILPRSIKILAVTGTNGKSTVATFSGQMLSHLGIEV 146
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
FVGGNLG PLSEAA C+ PS KP FQVAVVEVSSYQ+E+PNK+FCP+V+VVLNLT DH
Sbjct: 147 FVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVAVVLNLTSDH 206
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAWIGAFPGVKI 190
LERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++ + NLAWIGAFPGVK+
Sbjct: 207 LERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNEVNLAWIGAFPGVKV 266
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
D E K AS VPA+GVVS+L+L + VMG HNY+NAAVAALSVLGLD+G+D EA++STIE
Sbjct: 267 DKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIE 326
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------ 304
LR PPHRMQIVH+D GVTW+DDSKATN+EAT TGL+ LK K VILLGG AK
Sbjct: 327 KLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSVILLGGLAKVSNSQE 386
Query: 305 -------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 345
FG+SG LI KTL ++GLSIPCF AN++DAVN AR +A G
Sbjct: 387 SNGFEQLVEPLKYHRCVITFGFSGPLIQKTLSDDGLSIPCFEAANLEDAVNCARSVARYG 446
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQELAFSA 377
DA+VLSPGCASFDEFRNFEHRG VFQEL FS+
Sbjct: 447 DAVVLSPGCASFDEFRNFEHRGKVFQELVFSS 478
>gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera]
Length = 806
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/318 (70%), Positives = 258/318 (81%), Gaps = 11/318 (3%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYF 118
T ML+HLGIE FVGGNLG PLSEAA C+ PS KP FQVAVVEVSSYQ+E+PNK+F
Sbjct: 234 TLAFPMLSHLGIEVFVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHF 293
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HR 176
CP+V+VVLNLT DHLERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++ +
Sbjct: 294 CPSVAVVLNLTSDHLERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNE 353
Query: 177 FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236
NLAWIGAFPGVK+D E K AS VPA+GVVS+L+L + VMG HNY+NAAVAALSVLGL
Sbjct: 354 VNLAWIGAFPGVKVDKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGL 413
Query: 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV 296
D+G+D EA++STIE LR PPHRMQIVH+D GVTW+DDSKATN+EAT TGL+ LK K V
Sbjct: 414 DMGIDTEAISSTIEKLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSV 473
Query: 297 ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
ILLGG AK KTL +BGLSIPCF AN++DAVN AR +A GDA+VLSPGCAS
Sbjct: 474 ILLGGLAK---------KTLSDBGLSIPCFEAANLEDAVNCARSVARYGDAVVLSPGCAS 524
Query: 357 FDEFRNFEHRGMVFQELA 374
FDEFRNFEHRG VFQEL
Sbjct: 525 FDEFRNFEHRGKVFQELG 542
>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
Length = 492
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 186/386 (48%), Positives = 242/386 (62%), Gaps = 32/386 (8%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA + SG +SEL FAA+ P+++KI AVTGTNGKSTV TF GQ+L G+ FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG P S+AA C PS P +Q AV+EVSSYQ+E+P F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQAAVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN----LAWIGAFPGVKIDTE 193
+M+NY TKC LF M ++KL ++P ++ L + +++N AW+GA PGV++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGVQLDSQ 278
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
A+ A VP ++L L +K +G HN NAA A+L L LD+GVD L + I L
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
PHRMQIV +D +GV W++DSKATN++A TG+ L K VILLGG AK
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDEDGSLG 398
Query: 305 ----------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
FG G I K L +SIPCF M+DAV A +++ GD I
Sbjct: 399 FKKLSDLLQNHRAIVTFGAFGEQIEKELKEANVSIPCFRSLTMEDAVARAEKLSKQGDII 458
Query: 349 VLSPGCASFDEFRNFEHRGMVFQELA 374
+LSP CASFDEFRNF+HRG VF +LA
Sbjct: 459 LLSPACASFDEFRNFQHRGEVFGQLA 484
>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella
patens]
gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 521
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 183/384 (47%), Positives = 243/384 (63%), Gaps = 28/384 (7%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A +Q+G SEL FAA +P +IK+ AVTGTNGKSTV TF Q+L + G+ FVGGN
Sbjct: 134 IAAAIQAGVPAFSELGFAAAALPGNIKVAAVTGTNGKSTVTTFTSQILRNAGVRTFVGGN 193
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG PLS+ C+A P+ P F VAVVEVSSYQ+E+P F P +V+LNLTPDHLERHK
Sbjct: 194 LGTPLSDGVLQCLAFPAEDPPFSVAVVEVSSYQLELPGS-FHPKAAVILNLTPDHLERHK 252
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAK 195
+M+ Y KC +FS M + + ++P + L A+ G + AW+G PGV++D +A+
Sbjct: 253 SMEAYGSIKCRVFSRMEASDVAIIPQSDVLLRRLAAMSGSQATRAWMGGLPGVQLDKDAR 312
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
A VP GV ++L L +++ +G HN HNA AAL L LD+G+ E + + I L+ P
Sbjct: 313 RAIVVVPTTGVEARLYLSSLQAVGTHNAHNAGTAALLALSLDVGLQSEDIQAAIPHLKAP 372
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------- 304
PHRM+IVH+D QGV WV+DSKATN+++T G+ + G K V+LLGGQAK
Sbjct: 373 PHRMEIVHQDDQGVVWVNDSKATNVDSTSVGIRSIVGKKAVVLLGGQAKVGVGSGGLGFG 432
Query: 305 --------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 350
FG SG+ I + L + GLSI C DAV A +A GDA++L
Sbjct: 433 VLVESLQSHRAVVLFGASGLAIEQELRHAGLSITCTYTELFADAVQLAGSLAQPGDAVLL 492
Query: 351 SPGCASFDEFRNFEHRGMVFQELA 374
SPGCASFD+F+NFEHRG VF +LA
Sbjct: 493 SPGCASFDQFKNFEHRGQVFADLA 516
>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
Length = 492
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 184/386 (47%), Positives = 241/386 (62%), Gaps = 32/386 (8%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA + SG +SEL AA+ P+++KI AVTGTNGKSTV TF GQ+L G+ F+GGN
Sbjct: 102 LAYAMDSGIPTISELGLAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFIGGN 161
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG P S+AA C PS P +QV V+EVSSYQ+E+P F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFKFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN----LAWIGAFPGVKIDTE 193
+M+NY TKC LF M ++KL ++P ++ L + +++N AW+GA PG+++D++
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHADEFLRKV--AYKYNSGSTKAWLGALPGIQLDSQ 278
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
A+ A VP ++L L +K +G HN NAA A+L L LD+GVD L + I L
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLT 338
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
PHRMQIV +D +GV W++DSKATN++A TG+ L K VILLGG AK
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLG 398
Query: 305 ----------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
FG G I K L +SIPCF M+DAV A +++ GD I
Sbjct: 399 FKKLSDLLQNHRAIVTFGAFGEQIEKELKEANVSIPCFRSLTMEDAVARAEKLSKQGDII 458
Query: 349 VLSPGCASFDEFRNFEHRGMVFQELA 374
+LSP CASFDEFRNFEHRG VF +LA
Sbjct: 459 LLSPACASFDEFRNFEHRGEVFGQLA 484
>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
Length = 492
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 188/386 (48%), Positives = 242/386 (62%), Gaps = 32/386 (8%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA + SG +SEL FAA+ P+++KI AVTGTNGKSTV TF GQ+L G+ FVGGN
Sbjct: 102 LAYAMDSGIPTISELGFAAEAFPKAVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFVGGN 161
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG P S+AA C PS P +QV V+EVSSYQ+E+P F P+V V+LNL+PDHLERHK
Sbjct: 162 LGTPFSDAACECFMFPSDDPPYQVTVLEVSSYQLELPGS-FSPSVGVILNLSPDHLERHK 220
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN----LAWIGAFPGVKIDTE 193
+M+NY TKC LF M ++KL ++P G++ L + +++N AW+GA PGV++D +
Sbjct: 221 SMENYGETKCRLFERMDSSKLSIIPHGDEFLRKV--AYKYNSGSTKAWLGALPGVQLDNQ 278
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
A+ A VP ++L L +K +G HN NAA A+L L LD+GVD L + I L
Sbjct: 279 ARRAVVVVPTTKAEARLYLSGLKAVGSHNAQNAATASLLSLALDLGVDEHKLQAAIGQLT 338
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
PHRMQIV +D +GV W++DSKATN++A TG+ L K VILLGG AK
Sbjct: 339 PLPHRMQIVGQDKKGVLWINDSKATNVDAAYTGIKGLADRKAVILLGGLAKVLDQDGSLG 398
Query: 305 ----------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
FG G I K L +SIPCF M+DAV A +++ GD I
Sbjct: 399 FKKLSDLLQNHRAIVTFGAFGKQIEKELKEANVSIPCFRSLTMEDAVAIAEKLSKQGDII 458
Query: 349 VLSPGCASFDEFRNFEHRGMVFQELA 374
+LSP CASFDEFRNFEHRG VF +LA
Sbjct: 459 LLSPACASFDEFRNFEHRGEVFGQLA 484
>gi|225454866|ref|XP_002275450.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like
[Vitis vinifera]
Length = 307
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 194/365 (53%), Positives = 231/365 (63%), Gaps = 74/365 (20%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L++ GL+ LLQSGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE
Sbjct: 10 LESHGLSFLLQSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIEV 69
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
V GNLG PLSEAA C+ PS KP FQVAVVEVSSYQ+E+PNK+FCP+V V L+LT DH
Sbjct: 70 IVEGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVVVGLDLTSDH 129
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
LERHKTMKNYA+TKC L SHM N+KLG+LPF L+ +G G IDT
Sbjct: 130 LERHKTMKNYAITKCRLLSHMSNSKLGILPFVAA------------LSVLGLDMG--IDT 175
Query: 193 EAKTASFE---VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
EA +++ E VP H M++
Sbjct: 176 EAISSTIEKLRVPP---------HRMQI-------------------------------- 194
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS- 308
VH+D VTW+DDSKATN+EAT GL+ L K VI LGG AK S
Sbjct: 195 ------------VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAKVSNSQ 242
Query: 309 ---GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 365
G KTL +NG SIPCF AN++DAVN AR +A GDA++LSPGCASFDEFRNFEH
Sbjct: 243 ESDGFEPLKTLSDNGFSIPCFEAANLEDAVNCARSVARYGDAVILSPGCASFDEFRNFEH 302
Query: 366 RGMVF 370
RG VF
Sbjct: 303 RGKVF 307
>gi|147774763|emb|CAN60280.1| hypothetical protein VITISV_028258 [Vitis vinifera]
Length = 926
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 187/350 (53%), Positives = 222/350 (63%), Gaps = 81/350 (23%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ SGKR++S+LDFAA+++PRSIKILA TGTNGKST+ TF GQML+HLGIE
Sbjct: 432 MHSGKRILSKLDFAAEILPRSIKILAATGTNGKSTIATFSGQMLSHLGIE---------- 481
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
VAVVEVSSYQ+E+PNK+FCP++ V LNLT DHLERHKTMKN
Sbjct: 482 -------------------VAVVEVSSYQLEVPNKHFCPSIVVGLNLTSDHLERHKTMKN 522
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA+TK L + V
Sbjct: 523 YAITKKRLPVY------------------------------------------------V 534
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
PA+GVVS+L+L + VMGRHNY+N AVAALS LGLD+ +D EA++STIE LR PPHRMQI
Sbjct: 535 PAIGVVSKLKLGALNVMGRHNYYNVAVAALSDLGLDMXIDTEAISSTIEKLRVPPHRMQI 594
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS----GVLIWKTLV 317
VH+D VTW+DDSKATN+EAT GL+ L K VI LGG AK S G KTL
Sbjct: 595 VHKDSYEVTWIDDSKATNVEATYIGLLGLNEQKSVIPLGGLAKVSNSQESDGFEPLKTLS 654
Query: 318 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
+NG SIPCF AN++DAVN AR +A GDA++LSPGCASFDEFRNFEHRG
Sbjct: 655 DNGFSIPCFEAANLEDAVNCARSVARYGDAVILSPGCASFDEFRNFEHRG 704
>gi|303273586|ref|XP_003056153.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462237|gb|EEH59529.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 647
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 149/444 (33%), Positives = 204/444 (45%), Gaps = 94/444 (21%)
Query: 20 CLLQSGKR--VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
C + G + V+SEL FA+Q +P+ + I+A++GTNGKSTV +F Q+L F+GGN
Sbjct: 199 CQTKQGSKCTVISELAFASQCLPKMLPIVAISGTNGKSTVCSFTAQLLASCDCRTFMGGN 258
Query: 78 LGNPLSEAAF----------HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLN 127
+G PLS+ A H L P + AVVE SSYQ++ P + +LN
Sbjct: 259 IGKPLSDCALEFILAEHICGHLADLGHHWP-YDAAVVECSSYQLDHPGTLRF-DAACILN 316
Query: 128 LTPDHLERHKTMKNYALTKCHLFSHMVNT-KLGLLP-----------------FGNQHL- 168
LTPDHLERHK+M NYA K +F+ + T L +LP H+
Sbjct: 317 LTPDHLERHKSMANYATAKTQIFAGLRGTHTLAVLPKRESARGRHQSYQVESDSTTDHIV 376
Query: 169 -----------------------------NEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
NE + LA IG+ PGVK+D K A
Sbjct: 377 DLDYDGATLLEKCREAVIKTLMRRVSETPNERVACIGGRLAHIGSLPGVKVDLNTKIAIV 436
Query: 200 EVPAVGVV------SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEIL 252
+P+ S + L + +G HN NA++A L L V L ++ L
Sbjct: 437 HLPSNRSSSRQNSPSYVDLSAVSSLGTHNILNASIALLMAHSLSPKDFTVARLKVGLDRL 496
Query: 253 RTPPHRMQIVHR----DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG-------- 300
+ PHRMQ+V + +G+ WV+DSKATN+EA GL G + + G
Sbjct: 497 KLLPHRMQLVAQTGNPSFRGIHWVNDSKATNIEAAIVGLQSY-GRRALAKTGTASNELGF 555
Query: 301 -----------GQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 349
G FG SG LI L G++ P V+ + DAV AR + G A++
Sbjct: 556 AALVPALLKHQGVITFGESGSLIANELREAGIN-PKAEVSQLSDAVTLARAVVRRGGAVI 614
Query: 350 LSPGCASFDEFRNFEHRGMVFQEL 373
LSP CASFDEF +F RG VF L
Sbjct: 615 LSPACASFDEFDSFAQRGEVFTHL 638
>gi|149922481|ref|ZP_01910913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
pacifica SIR-1]
gi|149816676|gb|EDM76168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
pacifica SIR-1]
Length = 468
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 123/354 (34%), Positives = 171/354 (48%), Gaps = 32/354 (9%)
Query: 40 PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKF 99
PRS++ +TGTNGKSTV G +L G F GGNLG PLSE P
Sbjct: 121 PRSLETALITGTNGKSTVTALTGALLEAGGRSTFTGGNLGVPLSELVLAVARGEREAP-- 178
Query: 100 QVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157
+ V+E SSYQ+E + P VSV +LN++PDHL+R+ ++++YA TK +F +
Sbjct: 179 EALVLECSSYQLETLRVHGSPAVSVAMLLNVSPDHLDRYDSLEHYAETKGRVFGGLEPGG 238
Query: 158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKV 217
L LL ++ A G AS E+ G + + +
Sbjct: 239 LALLS-ARDAFTPRLRRFVPEAARCVLVDGEDDRPRLSDASLEL---GAGESIDRRALAL 294
Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ-IVHRDIQGVTWVDDSK 276
GRHN NA A L+ L GV ++ +T+ + PHRM I RD GV + DDSK
Sbjct: 295 AGRHNALNALFAVLAARHL--GVSLDTCEATLRRFQALPHRMNPIAERD--GVRYFDDSK 350
Query: 277 ATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSI------------- 323
ATN+ + GL + V++ GG+AK G + L G ++
Sbjct: 351 ATNVASVLAGLDGFE-QTFVLICGGRAKDGDDLGALRPVLARQGRALVALGESAEQFMAM 409
Query: 324 -----PCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
PC VA+M +AV A A GDA++LSP CAS+D +R+F HRG VF E
Sbjct: 410 AKGALPCVRVADMDEAVRVAASCAQPGDAVLLSPACASWDMYRSFVHRGEVFAE 463
>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylotenera
mobilis JLW8]
gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
mobilis JLW8]
Length = 452
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 188/384 (48%), Gaps = 67/384 (17%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+Q G V+ +++ AQ P S K++A+TG NGK+TV T VG+M G++ V GN+G P
Sbjct: 90 IQRGIPVVGDVELFAQYRPTSAKLIAITGANGKTTVTTLVGEMCKSAGLKTIVAGNIGLP 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ + L P V V+E+SS+Q+E N + +LNL+ DH++R+ +M++
Sbjct: 150 VLD------TLSMETP--DVYVLELSSFQLETTNSLLA-DAATMLNLSEDHMDRYDSMQS 200
Query: 142 YALTKCHLFSH---------------MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP 186
YA+ K H+F H M KL + FG L++ + + + +
Sbjct: 201 YAVAKAHIFYHAKLQVLNRDDAWSLMMARAKLAQVTFG---LDDVVAEQDYGIKQVNGET 257
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
+ + G + + ++K+ G HN NA A G IG+D +
Sbjct: 258 WL--------------SCGTHDLMNIRDLKIAGLHNASNALAAMALCRG--IGLDFAPII 301
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-- 304
T+ + PHR++ V +I V + DDSK TN+ ATC L L K V++ GG+ K
Sbjct: 302 QTLYNFKGLPHRVEWV-ANIDDVDYYDDSKGTNVGATCAALSGLS-QKVVLIAGGEGKGQ 359
Query: 305 ------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 346
G LI L++ ++P + A++ +AV A+++A GD
Sbjct: 360 DFSPLKEAVSTNARAVVLIGRDAPLIEAELLST--NVPMYHAADLPEAVTIAQKLAQTGD 417
Query: 347 AIVLSPGCASFDEFRNFEHRGMVF 370
A++LSP CASFD F+N+ HR VF
Sbjct: 418 AVLLSPACASFDMFKNYVHRAEVF 441
>gi|206889487|ref|YP_002249134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741425|gb|ACI20482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 482
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 200/404 (49%), Gaps = 50/404 (12%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLG 69
L + + G V+ E++ + Q+ I ++KI+ +TG NGKST T + L G
Sbjct: 88 LSTPSIVSAVYKGIPVIGEIELSWQILSLIKENVKIIGITGANGKSTTSTLTYEFLKRDG 147
Query: 70 IEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLT 129
+ + GN+G P++E + L + + + V+E+SS+Q+E K F P + +LN+T
Sbjct: 148 KKVQLAGNIGYPMAEV---VLKLLNKEIDMEYLVLELSSFQLE-GIKTFKPDFAAILNIT 203
Query: 130 PDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI---------KG---HRF 177
PDH++R+ MK Y K +F + +L +++ AI KG H F
Sbjct: 204 PDHMDRYSDMKEYIEAKAKIFQNQNGDDYLILNMDDENTISAIEYLRNVYLKKGKLPHVF 263
Query: 178 NLAWIGAFPGVKIDTEA------KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ + G + ++ + S ++ + L + K+ G HN N + A
Sbjct: 264 YFSRVQNVYGAYLKNDSIYFNAREEVSDDIKKEMENTVLSVSTFKIKGIHNVEN--IMAA 321
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
S+L L G +++ ++ PHRM+ V R+I GV +++DSK TN++A L
Sbjct: 322 SLLALCSGCKGQSIKDVVQQFPGLPHRMEPV-REIDGVIYINDSKGTNVDAVKKSLESFP 380
Query: 292 GHKCVILLGGQAKFGYSGVLIWKTLVNN-------------------GLSIPCFAVANMK 332
G+ +++ GG+ K G L K++V G +PC+ ++MK
Sbjct: 381 GN-VILIAGGRDKDGDFSAL--KSIVKEKVKALLLIGEAKHKIADALGDLVPCYLESDMK 437
Query: 333 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
AV A+ +A GD ++LSPGCASFD F+NFEHRG VF+++ S
Sbjct: 438 SAVIKAKEIARAGDVVLLSPGCASFDMFKNFEHRGEVFKDIVNS 481
>gi|304317204|ref|YP_003852349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778706|gb|ADL69265.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 454
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 193/375 (51%), Gaps = 46/375 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ E++FA ++ I A+TGTNGK+T + +G++ + G+ +V GN+G PL E
Sbjct: 92 GIEVIGEVEFAYRL--SKAPIYAITGTNGKTTTTSLLGEIFKNSGVRTYVAGNIGYPLVE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA V V E+SS+Q+E K F P +S ++N+TPDHL RHKT++NY
Sbjct: 150 AAVKA-------GNDDVIVAEISSFQLETI-KEFRPVISAIINITPDHLNRHKTLENYIN 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + +++++ F+ A FP + E +
Sbjct: 202 IKGRIFENQSFNEYTVLNYDDKNISSL-----FDRAKCKVFPFSMEKILYRGTYVENGKI 256
Query: 205 GVVSQ------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ S + ++++ + G HN NA VA S + G+DV +N+T++ + HR
Sbjct: 257 VISSNGEKNTIIDINDIYIPGNHNVENAMVA--STMAFLAGIDVNIINTTLKTFKGVEHR 314
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
++ V R I GV + +DSK TN +A + +KG +++ GG K
Sbjct: 315 IEFV-RSINGVKYYNDSKGTNPDAAIKAIEAMKG-PIILIAGGYDKGVSFDEFTSSFNGR 372
Query: 305 ------FGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAIVLSPGCASF 357
G + LI+K+ V NG S V N + DAV A +M+ GD ++LSP CAS+
Sbjct: 373 VRKLILLGETRDLIYKSAVKNGFSREDITVVNSLDDAVYAAYKMSMPGDNVLLSPACASW 432
Query: 358 DEFRNFEHRGMVFQE 372
D F+NFE RG +F++
Sbjct: 433 DMFKNFEERGKLFKD 447
>gi|218780973|ref|YP_002432291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfatibacillum
alkenivorans AK-01]
gi|254766048|sp|B8FBS0.1|MURD_DESAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|218762357|gb|ACL04823.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
alkenivorans AK-01]
Length = 450
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 192/378 (50%), Gaps = 46/378 (12%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L + G V+ E++ A++ I I+AVTGTNGK+TV + +G+M+ GI AFVGGN
Sbjct: 85 LEAAREKGVPVIGEVELASRFI--QAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+GNPL + + K QV V E+SS+Q++ + F P V+++ N+T DH++R+
Sbjct: 143 IGNPL-------VNYAKGEDKAQVVVAEISSFQLDTI-ESFAPKVALLTNVTEDHMDRYD 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M+ YA +K +F + +L G + A+ G W F G + + EA A
Sbjct: 195 GMEGYAASKARVFMNQTGADFAILN-GCDKWSRAMCGGIKASQWF--FTG-REEAEAGIA 250
Query: 198 SFEVPAVGVVSQLQLH------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A+ + Q H M + G HN NAA AAL+ VE + I+
Sbjct: 251 -MNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAG--ASVEGIQGAIDA 307
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI--LLGGQAKFGY-- 307
+ PHR++ V R++ V + DDSKATN++A L L+G + ++GG+ K G+
Sbjct: 308 FKGLPHRLEFV-REVMDVKYYDDSKATNVDAV---LRALEGFNAPVHLIMGGRDKGGHFR 363
Query: 308 --------SGVLIWKTLVNNGL-------SIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
++ T G+ S+ ++ AV A+R A G+ +VLSP
Sbjct: 364 DLKDMVEQKAARLYVTGEAAGIITSALSGSVEVVQAGTIEKAVEFAKRAARPGEVVVLSP 423
Query: 353 GCASFDEFRNFEHRGMVF 370
GCASFD+++N++ RG F
Sbjct: 424 GCASFDQYKNYKERGKDF 441
>gi|383788843|ref|YP_005473412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caldisericum exile
AZM16c01]
gi|381364480|dbj|BAL81309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caldisericum exile
AZM16c01]
Length = 448
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 187/375 (49%), Gaps = 35/375 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G +++ EL+FA P + KI+A+TGTNGKST G + VGGNLG
Sbjct: 83 LESKGIKIIGELEFANMFSPNT-KIIAITGTNGKSTTTALTGHIFKLFNQNTVVGGNLGT 141
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P SE + L + P++ AV+E S +Q+E +Y P VSV LN T DHL+R+ +M+
Sbjct: 142 PYSE-----LLLENPNPEY--AVLETSCFQLETIEQY-HPEVSVFLNFTEDHLDRYTSME 193
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
+Y K +F + + +L + ++ +L++ IK + + + + K
Sbjct: 194 DYLKAKKRIFINQTESDFAILNYDDEVVKNLSKEIKPQVYYFSLKESIESGAFLKDNKIY 253
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E ++ + ++G HN N + L + +GV VE + I + PH
Sbjct: 254 FREDKFSKPKEIIEKEEIPLLGLHNVQNTLASILC--SIVMGVPVEVIRDGIRTFKGLPH 311
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSG----- 309
R++ V R++ GV +++DSK+T ++T L K +++ GG +K F
Sbjct: 312 RLEFV-REVNGVIFINDSKSTTPDSTIKALESF-NQKVILIAGGSSKNNDFTQLAKMFRD 369
Query: 310 -----VLIWKTL-----VNNGLSIPCFA-VANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+L+ +T + FA V ++K+A+ AR +A GD ++LSP CASFD
Sbjct: 370 KVKFLILLGQTAHQLKEASTKADFHDFAIVGSLKEAITFARNIAKAGDIVLLSPACASFD 429
Query: 359 EFRNFEHRGMVFQEL 373
FR+FE RG F+E+
Sbjct: 430 MFRDFEDRGEQFKEI 444
>gi|333896893|ref|YP_004470767.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium xylanolyticum LX-11]
gi|333112158|gb|AEF17095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 454
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 193/370 (52%), Gaps = 36/370 (9%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ E++FA ++ I A+TGTNGK+T + +G++ G++ +V GN+G PL E
Sbjct: 92 GIDVIGEVEFAYRL--SKAPIYAITGTNGKTTTTSLLGEIFKASGVKTYVAGNIGYPLVE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA + A V V E+SS+Q+E K F P +S ++N+TPDHL RHKT++NY
Sbjct: 150 AAINANAE-------DVIVAEISSFQLETI-KEFKPVISAIINITPDHLNRHKTLENYIE 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + +++++ K + N+ ++ T + + A
Sbjct: 202 IKGRIFENQTADQFTVLNYDDKNISSLFKKAKCNVFPFSRNRALEYGTYLENGKIIISAN 261
Query: 205 GVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
G S + + ++ + G HN NA VA S + G+D++ ++ T+ + HR++ V
Sbjct: 262 GEKSTIIDIEDIYIPGNHNVENAMVA--STMAYLAGIDIKVISETLRTFKGVEHRIEFV- 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------------- 304
R++ GV + +DSK TN +A + +KG +++ GG K
Sbjct: 319 RNVNGVKYYNDSKGTNPDAAIKAIEAMKG-PIILIAGGYDKGVSFDEFTASFKGRVKKLI 377
Query: 305 -FGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
G + LI+K+ + G S V ++ DAV A A GD ++LSP CAS+D FRN
Sbjct: 378 LLGETKDLIYKSAIKEGYSEDDVIFVESIDDAVYAAYNAAKPGDNVLLSPACASWDMFRN 437
Query: 363 FEHRGMVFQE 372
+E RG +F++
Sbjct: 438 YEERGRLFKD 447
>gi|251772197|gb|EES52767.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
ferrodiazotrophum]
Length = 488
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 184/385 (47%), Gaps = 58/385 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA- 86
+ EL++AA + R ++A+ GTNGKST VG +L G F+GGN G P SE
Sbjct: 100 IRGELEWAASLWDR--PVVAIGGTNGKSTTTALVGHLLKSAGFSPFIGGNFGVPFSEGVR 157
Query: 87 -FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
+ F VAV+EVSS+Q E + F P + ++LN+TPDHL+R+ ++ Y L
Sbjct: 158 LMRTARKEGKRDPFDVAVIEVSSFQTE-SMQSFSPDIYLLLNITPDHLDRYDSLAQYRLA 216
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K H+ S + + E + ++G S E+P G
Sbjct: 217 KLHVASLFSPSTTVIWNASQDDWREWGPRTKARSVFVG--------------SAELPGPG 262
Query: 206 VV---SQLQLHNM-----------KVMGRHNYHNAAVAALS--VLGLDIG--VDVEALNS 247
VV S LQ H + +++G N N A + L+ +LG +G +D L
Sbjct: 263 VVLSGSHLQSHGLRDSFSVSTAGYRLIGGGNLQNLAFSVLATILLGETMGRRIDPGILEE 322
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATN---LEATCTGLMDLKGHKCVILLGGQAK 304
I PHRM+ V ++GVT+V+DSKATN +EA GL D+ V+++GG+ K
Sbjct: 323 AIASFTGLPHRMERVA-TVRGVTFVNDSKATNVGAVEAALAGLSDVGHPHVVLIMGGRDK 381
Query: 305 FG-YSGVLIW----------------KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 347
G Y ++ W K + G IP ++ +AV A +A +G+
Sbjct: 382 GGSYRPLIPWLKNHVREVVAIGEAREKIRRDLGKEIPIEEAQDLFEAVARAFSVADSGEM 441
Query: 348 IVLSPGCASFDEFRNFEHRGMVFQE 372
++LSP C+S+D F +E RG F+E
Sbjct: 442 VLLSPACSSYDMFHGYEERGERFRE 466
>gi|218961097|ref|YP_001740872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid adding enzyme) [Candidatus Cloacamonas
acidaminovorans]
gi|167729754|emb|CAO80666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid adding enzyme) [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 472
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 194/377 (51%), Gaps = 42/377 (11%)
Query: 21 LLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
+LQ K ++SE++ ++ + KI+AVTG+NGKST V+ + +L LG ++ + G
Sbjct: 103 ILQKAKEKNIELISEIELGYRIKAKDSKIIAVTGSNGKSTTVSLIHHILTGLGKKSLLAG 162
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+G+ AF + KP + V+E+SS+Q+++ N F P V+V+LN+TPDH++R+
Sbjct: 163 NIGD-----AFCSYDI--EKPGWDYIVLEISSFQLDLINS-FQPDVAVLLNITPDHIDRY 214
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFPGVKIDTE 193
+ ++YAL+K ++F + T +L + + +H + IK + + P D
Sbjct: 215 NSFEDYALSKVNIFKNQEMTDTAVLFWDSPEVKHFTKDIKARKL---YFSLSPN---DNA 268
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
+ G +++ L + G HNY NA A L+V L + + ++ +
Sbjct: 269 FAYLANNYIQFGSETKVPLSYFAIKGPHNYANAMSAMLAVYAL--IPEPTKIAEAVKGFK 326
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVL-- 311
+ PHR++ V I+GV++ +DSKATN ++ + L + I++GG K VL
Sbjct: 327 SLPHRLEYVDT-IKGVSFYNDSKATNTDSVRSALNSFE-QPIRIIMGGSDKGEDYSVLAA 384
Query: 312 -IWKTLVNNGLS--------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
+ K + L+ IP +A+ + V A + GD IVLSP CAS
Sbjct: 385 DLQKKVKKAYLTGDTREKMRKTFSGKIPLECIADFELTVRKAFSDSDEGDIIVLSPACAS 444
Query: 357 FDEFRNFEHRGMVFQEL 373
FD F N+E RG F+E+
Sbjct: 445 FDRFNNYEERGNFFKEI 461
>gi|390934668|ref|YP_006392173.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570169|gb|AFK86574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 454
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 191/370 (51%), Gaps = 36/370 (9%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ E++FA ++ I A+TGTNGK+T + +G++ G + +V GN+G PL E
Sbjct: 92 GIDVIGEVEFAYRL--SKAPIYAITGTNGKTTTTSLLGEIFKASGAKTYVAGNIGYPLVE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA + A V V E+SS+Q+E K F P +S ++N+TPDHL RHKT++NY
Sbjct: 150 AAINANAE-------DVIVAEISSFQLETI-KEFKPEISAIINITPDHLNRHKTLENYIE 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + + +L + +++++ K + N+ ++ T + + A
Sbjct: 202 IKGRIFENQTSDQFTVLNYDDKNISSLFKKAKCNVFPFSRNRVLEYGTYLENGKIIISAD 261
Query: 205 GVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
G + + ++ + G HN NA VAA + G+D++ +N T+ + HR++ V
Sbjct: 262 GEKKTIIDVEDIYIPGNHNVENAMVAA--TMAYLAGIDIKVINETLRTFKGVEHRIEFV- 318
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------------- 304
R I GV + +DSK TN +A + +KG +++ GG K
Sbjct: 319 RTINGVKYYNDSKGTNPDAAIKAIEAMKG-PIILIAGGYDKGVSFDEFTASFKGRVKKLI 377
Query: 305 -FGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
G + LI+K+ + G S V ++ DAV A A GD ++LSP CAS+D FRN
Sbjct: 378 LLGETKDLIYKSAIKEGYSEDDVIFVESIGDAVYAAYNAAKPGDNVLLSPACASWDMFRN 437
Query: 363 FEHRGMVFQE 372
+E RG +F++
Sbjct: 438 YEERGRLFKD 447
>gi|86160187|ref|YP_466972.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|118595640|sp|Q2IG29.1|MURD_ANADE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|85776698|gb|ABC83535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 462
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 187/388 (48%), Gaps = 52/388 (13%)
Query: 22 LQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQML-NHLGIEAFVGG 76
+Q+ +R V E++ AA+ + + I+ +TGTNGKST G +L H FVGG
Sbjct: 87 IQAARRRGVPVWGEVELAARFL-GGLPIVGITGTNGKSTTTALTGALLARHR--RTFVGG 143
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
NLG PLSE S +P AVVE+SS+Q+E + F V+ VLN+TPDHL+R+
Sbjct: 144 NLGTPLSELVL------SGEPA-AAAVVELSSFQLEGIER-FRARVAAVLNVTPDHLDRY 195
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKIDTE 193
+ YA K LF+ + + + + A +G + P D
Sbjct: 196 PDVDAYAAAKARLFATQEPDDVAVANARDPRALAMAGASRGDLHTFGFGAPVPASARDEG 255
Query: 194 AK-----TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ TA + P + QLHN + GRHN NA A L +GV EA+ +
Sbjct: 256 GEPGPGGTAIWYTPRGRAPERYQLHNRALRGRHNRENAMAAVLCAR--LMGVPGEAVQAG 313
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAK-- 304
++ HR+++V + +GV WV+DSKATN+++T GL + V+++GG+ K
Sbjct: 314 LDAFPGLHHRLELVA-EGRGVEWVNDSKATNVDSTFVGLAAFPAGAPRVVLIMGGRGKKA 372
Query: 305 ------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 346
G I + L + + PC ++ AV A ++ GD
Sbjct: 373 PYAPLRPLFGGRVKALLTIGEDAPAIERELGDLAPTEPC---GDLPGAVRRAAVLSGPGD 429
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQELA 374
++LSP CAS+D+F ++E RG F+ LA
Sbjct: 430 VVLLSPACASYDQFASYEERGEAFRRLA 457
>gi|51246751|ref|YP_066635.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Desulfotalea
psychrophila LSv54]
gi|62900515|sp|Q6AJ52.1|MURD_DESPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|50877788|emb|CAG37628.1| related to UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Desulfotalea psychrophila LSv54]
Length = 456
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 181/373 (48%), Gaps = 36/373 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA L ++G +V+ EL AA V+ R ++A+TGTNGK+TV + VG +L G FVGGN
Sbjct: 91 LARLRRAGVQVLGELALAAPVLDR--PVVAITGTNGKTTVTSLVGDLLRASGKRVFVGGN 148
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + L SS + V V+EVSS+Q+E+ F P ++++LNL+PDHL+RH
Sbjct: 149 IGVPL-------LDLLSSGDEVDVIVLEVSSFQLELAGD-FSPHIALLLNLSPDHLDRHG 200
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
+ Y K HLF T + ++ G+ L G ++ F D
Sbjct: 201 DLAGYRAAKMHLFQKQGMTDIAIVS-GDDPLCLLSDGCGEASRYLFGFSAAS-DISVAAG 258
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILRTPP 256
FE G L + + R + NAA AA L D+E I
Sbjct: 259 HFEFDFAGQREIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIE---RGIAAFTLDA 315
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW--- 313
HRM+ V I GV + +DSKATN A + L L + +++ GG+ K +L
Sbjct: 316 HRMEPVA-SIAGVQYYNDSKATNTGAVISALQQLV--RVILIAGGRDKGDNYRLLREAVA 372
Query: 314 ---KTLVNNGLSIPCFAVA-----------NMKDAVNHARRMATNGDAIVLSPGCASFDE 359
+TL+ G + P A ++ +AV+ A A GD+++LSP CASFD
Sbjct: 373 GHVRTLICIGEATPLLVAALEDVVQVYRATSLAEAVSLAASFAEEGDSVLLSPACASFDM 432
Query: 360 FRNFEHRGMVFQE 372
F N++ RG F+
Sbjct: 433 FANYQDRGEQFRR 445
>gi|373488415|ref|ZP_09579080.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Holophaga foetida
DSM 6591]
gi|372006740|gb|EHP07372.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Holophaga foetida
DSM 6591]
Length = 443
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/385 (35%), Positives = 187/385 (48%), Gaps = 59/385 (15%)
Query: 22 LQSGKRVMSELDFAAQVI----PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L G V+ EL+FA +V+ P ++ ILAVTGTNGKST + +L + A GN
Sbjct: 84 LGRGIPVLGELEFAHRVLRTQDPDAV-ILAVTGTNGKSTTTDLLAHLLRAADLPAVACGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG PL +A L ++P + A+ E SSYQ+E + F +V+LNLTPDHL RH
Sbjct: 143 LGTPLMDA------LKGAQPGTRYAL-ECSSYQLET-VREFHAQGAVLLNLTPDHLARHG 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNL---------AWIGAFPGV 188
+M+ Y K +F L L+P G N G R + AW AF +
Sbjct: 195 SMEGYLAAKLRVFERQEEGDLALMPMGATFENPG-HGRRADFGWSEPEGPGAWCDAFGML 253
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALN 246
+ T+A+ L +K+ G HN NA A+A S G D G + L
Sbjct: 254 WLRTDAQAQEL----------LHRSELKIPGDHNVENALAAIALASHGGADPGSLRQGLR 303
Query: 247 STIEILRTPPHRMQIV-HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF 305
S + HR+ RD GV++ +DSK TN++AT T + L G V++LGG+ K
Sbjct: 304 SYPGLA----HRIAFCGERD--GVSFYNDSKGTNVDATLTAIKALSG-PLVLMLGGEDKG 356
Query: 306 G----YSGVLIWK--TLVNNGLSIPCF----------AVANMKDAVNHARRMATNGDAIV 349
VL K LV G +IP +V +A + A R A GD ++
Sbjct: 357 ASYEPLRAVLDGKLRRLVFLGDAIPQLERDLGDLPHDSVWAFDEAFSLACRCAHPGDQVL 416
Query: 350 LSPGCASFDEFRNFEHRGMVFQELA 374
LSP CASFD+FRNFE RG F+ LA
Sbjct: 417 LSPACASFDQFRNFEERGEHFEALA 441
>gi|433655384|ref|YP_007299092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293573|gb|AGB19395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 454
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 190/376 (50%), Gaps = 48/376 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ E++FA ++ I A+TGTNGK+T + +G++ + G+ +V GN+G PL E
Sbjct: 92 GIEVIGEVEFAYRL--SKAPIYAITGTNGKTTTTSLLGEIFKNSGVRTYVAGNIGYPLVE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA V V E+SS+Q+E K F P +S ++N+TPDHL RHKT++NY
Sbjct: 150 AAVKA-------GNDDVIVAEISSFQLETI-KEFRPVISAIINITPDHLNRHKTLENYIN 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + +++++ F A FP + + E +
Sbjct: 202 IKGRIFENQSFNEYTVLNYDDKNMSSL-----FKKAKCKVFPFSRAKVLDQGTYIENGKI 256
Query: 205 GVVSQLQLHNMKVM-------GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
V+S N + G HN NA VA S + G+DV +N+T++ + H
Sbjct: 257 -VISLNGEKNTIIDIDDIYIPGNHNVENAMVA--STMAFLAGIDVNTINTTLKTFKGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------- 304
R++ V R I GV + +DSK TN +A + +KG +++ GG K
Sbjct: 314 RIEFV-RSINGVKYYNDSKGTNPDAAIKAIEAMKG-PIILIAGGYDKGVSFDEFTSSFNG 371
Query: 305 -------FGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAIVLSPGCAS 356
G + LI+++ V NG S V N + DAV A +M+ GD ++LSP CAS
Sbjct: 372 RVRKLILLGETKDLIYESAVKNGFSREDITVVNSLDDAVYAAYKMSMPGDNVLLSPACAS 431
Query: 357 FDEFRNFEHRGMVFQE 372
+D F+NFE RG +F++
Sbjct: 432 WDMFKNFEERGKLFKD 447
>gi|229496695|ref|ZP_04390409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
endodontalis ATCC 35406]
gi|229316592|gb|EEN82511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
endodontalis ATCC 35406]
Length = 452
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 198/375 (52%), Gaps = 37/375 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
++ G V+SE++FA++ +P K+ A+TG+NGK+T V +V +L G +A + GN+G
Sbjct: 82 FIKRGISVISEIEFASRYLPEDTKVAAITGSNGKTTTVNWVTHILKTAGYDAAMCGNVG- 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139
F L + P + VVE+SS+Q++ K F P VSV+LN+TPDHL+R+K
Sbjct: 141 ------FSMARLVAEDP-HKYYVVEMSSFQLDGTYK-FHPNVSVLLNITPDHLDRYKHKF 192
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN---LAWIGAFPGVKIDTEAKT 196
+ YAL+K + + + + + + ++ H L + G K E+
Sbjct: 193 ELYALSKMRITQQLGKGDSFVYWEEDAFIKKYLEQHSMECTLLPFSLQTSGAKALYESDK 252
Query: 197 ASFEVPAVGVVSQLQL--HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + A +S + ++ ++G+HN NA +AL + + GV E L + +
Sbjct: 253 ETLHIEAQHNLSAFSIPKRDLALVGKHNLLNAMASAL--VAREFGVSNEYLGKALRDFKN 310
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV--- 310
PHR++ V +I GV +++DSKATN+++T L + + V++LGG K YS +
Sbjct: 311 VPHRIEYV-AEIDGVRYINDSKATNIQSTFYAL-EAQTTPVVLILGGTDKGNNYSEIEDV 368
Query: 311 -------LIWKTLVNNGL------SIPCFAVA-NMKDAVNHARRMATNGDAIVLSPGCAS 356
LI+ + N+ L I A +M + + HA+ +A +GD ++LSP CAS
Sbjct: 369 VLSKCRALIFMGIDNDKLHRAFDGKIDQIRDARSMDECLTHAQELAQSGDVVLLSPACAS 428
Query: 357 FDEFRNFEHRGMVFQ 371
FD F+N+E RG F+
Sbjct: 429 FDLFKNYEDRGEQFK 443
>gi|302036130|ref|YP_003796452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
Nitrospira defluvii]
gi|300604194|emb|CBK40526.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
Nitrospira defluvii]
Length = 462
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 189/375 (50%), Gaps = 36/375 (9%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G RV+ EL+ A++ + + ++AVTGTNGKST VT +G+ L G AFVGGNLG SE
Sbjct: 92 GVRVIGELELASRFL--TAPVVAVTGTNGKSTTVTLIGKFLQESGKRAFVGGNLGIAASE 149
Query: 85 AAFHCI-ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AA + A S ++ V+EVSS+Q+E + F P ++ +LN+T DH++R+ ++++Y
Sbjct: 150 AALTSVQAKAGSAAPYEYVVLEVSSFQLETTEQ-FHPWIAAILNVTLDHMDRYASVEDYV 208
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGA-FPGVKIDTEAKTASF 199
K +F++ L + L KG + GA GV T
Sbjct: 209 AAKATIFANQTAGDYSLFNLDDARVAALRGRTKGTVLGFSRSGATVSGVAGATVLDGDLI 268
Query: 200 EVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP-- 256
G ++ + +M+++G HN N V A GL G +EA+ + +LR+ P
Sbjct: 269 VTTVRGRREEICRRSDMRLIGLHNVEN--VMAAVTYGLLCGCSIEAVRA---VLRSFPGL 323
Query: 257 -HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG--------- 306
H +++V R+ +GV +V+DSK TN++A L + ++ GG+ K G
Sbjct: 324 EHALEVV-RERRGVRFVNDSKGTNVDAVLKALEGID-QPIWLIAGGRDKGGDFSRLERAI 381
Query: 307 ---YSGVLIWKTLVNN-----GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
G+++ G C A ++DAV A R A G+ ++LSP CASFD
Sbjct: 382 RERVKGLILIGEAAGRIQAAMGDFDRCRPAATLRDAVELAAREAQPGEVVLLSPACASFD 441
Query: 359 EFRNFEHRGMVFQEL 373
F +++ RG F+ L
Sbjct: 442 MFADYQDRGRQFKAL 456
>gi|33598264|ref|NP_885907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
parapertussis 12822]
gi|62900578|sp|Q7W4B2.1|MURD_BORPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33566822|emb|CAE39037.1| putative peptidoglycan synthesis protein [Bordetella parapertussis]
Length = 508
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 128/382 (33%), Positives = 179/382 (46%), Gaps = 59/382 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALIDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLG 159
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K + +VN
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 160 L---LPFGNQHLNEAIKGHRF-------------NLAWIGAFPGVKIDTEAKTASFEVP- 202
L + Q LN G +AW+ A D A + P
Sbjct: 248 LTVAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPRRKKDAPP 307
Query: 203 ---AVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
A G +S+L + +++ G HN NA A LD+G + T+ PHR
Sbjct: 308 PTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAGEPHR 365
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
++V R I V +++DSK TN+ AT L L G + V++ GGQ K
Sbjct: 366 AELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGKGQDFSPLVPVVRRH 423
Query: 305 ------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
G G I K L G +PC A A+M++AV A +A GDA++LSP CASFD
Sbjct: 424 ARAVVLIGVDGAAIGKVLEPTG--VPCVAAADMREAVRRAAELAQPGDAVLLSPACASFD 481
Query: 359 EFRNFEHRGMVF----QELAFS 376
FRN+ HRG VF QELA
Sbjct: 482 MFRNYPHRGEVFAAEVQELALD 503
>gi|297539594|ref|YP_003675363.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
versatilis 301]
gi|297258941|gb|ADI30786.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
versatilis 301]
Length = 452
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 120/377 (31%), Positives = 190/377 (50%), Gaps = 53/377 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+Q G V +++ AQ P S K++A+TG NGK+TV T VG++ G++ V GN+G P
Sbjct: 90 VQRGVSVAGDVELFAQYRPTSAKVIAITGANGKTTVTTLVGEICKAAGLKTIVAGNIGLP 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ + AL P V V+E+SS+Q+E + + +LNL+ DH++R+ + ++
Sbjct: 150 VLD------ALMMETP--DVYVLELSSFQLETTSNLQI-DAATMLNLSEDHMDRYASFQD 200
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA+ K +F N KL +L N+ ++ R LA + +D + + S+ +
Sbjct: 201 YAIAKARIF---YNAKLQVL---NRDDAWSMMMARPKLAQV----TFGLDDDGEETSYGL 250
Query: 202 PAV--------GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
V G + L ++K++G HN NA A G IGVD + T+ +
Sbjct: 251 KQVDGDTWLCEGDKELINLQDLKIVGLHNAANALAAVALCRG--IGVDYAHIIQTLYNFK 308
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
PHR++ V +I V + DDSK TN+ ATC L L K V++ GG K
Sbjct: 309 GLPHRVEWVA-NIDDVDYYDDSKGTNVGATCAALTGL-AQKVVLIAGGDGKGQDFTPLAA 366
Query: 305 -----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
G LI L+ +IP + A++ +AVN A+++A +A++LSP
Sbjct: 367 AVAENASAVVLIGRDAPLIEAALLPT--NIPLYQAADLPEAVNIAKKLAKADEAVLLSPA 424
Query: 354 CASFDEFRNFEHRGMVF 370
CASFD F+N+ HR VF
Sbjct: 425 CASFDMFKNYVHRAEVF 441
>gi|313200239|ref|YP_004038897.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Methylovorus sp.
MP688]
gi|312439555|gb|ADQ83661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
MP688]
Length = 460
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/385 (31%), Positives = 174/385 (45%), Gaps = 65/385 (16%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L +G +V+ +++ AQ PRS K++A+TG NGK+TV T VG+M G++ V GN+G P
Sbjct: 89 LANGIQVVGDVELFAQFRPRSSKVIAITGANGKTTVTTLVGEMCKAAGLKTVVAGNIGLP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ +A + V V+E+SS+Q+E P + VLN+T DH++R+ M
Sbjct: 149 VLDALRQV----ETDGAPDVYVLELSSFQLET-TSSLAPDAAAVLNVTEDHMDRYPGMPE 203
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAKTASF 199
YA K + G Q LN AW A P + T
Sbjct: 204 YAAAKARILKGA----------GVQVLNR-------EDAWCRNMALPDQPVVTFGLDLPV 246
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD--------------IGVDVEAL 245
E A G+ L LH+ + + + V L + GL IGVD L
Sbjct: 247 ESHAYGL---LALHDQLWLAQGAHPILHVEELRIPGLHNAANALAALALCRAIGVDWAPL 303
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK- 304
+ + PHR++ V D+ + + DDSK TN+ ATC L L K V++ GG K
Sbjct: 304 QHVLREFKGLPHRVEWVA-DLHDIAFYDDSKGTNVGATCAALAGLP-RKVVLIAGGDGKG 361
Query: 305 -------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 345
G LI L G +P A++++AV A AT G
Sbjct: 362 QDFSPLREPVDQNARAVVLIGRDAALIEAAL--QGSPVPRLHAASLEEAVQQAYAAATPG 419
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVF 370
DA++LSP CASFD FRN+ HR VF
Sbjct: 420 DAVLLSPACASFDMFRNYAHRAEVF 444
>gi|269792481|ref|YP_003317385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100116|gb|ACZ19103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 462
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 182/380 (47%), Gaps = 49/380 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G + E+DF + ++ VTG+NGK+T + +G +LN G+ V GN+GNPL
Sbjct: 92 GMPTVGEVDFVFPFL--GSPVVGVTGSNGKTTTTSILGHVLNAAGVSTAVAGNIGNPLG- 148
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS----VVLNLTPDHLERHKTMK 140
++P S + V E+SS+Q+ ++C S VV NL PDH++ H + +
Sbjct: 149 ------SVPLSGETPSLVVAELSSFQL-----HWCEEASFAGGVVTNLAPDHIDWHGSYE 197
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAWIGAFPGVKIDTEAKTAS 198
NY L K L ++ + + G + L+W GV +D A+ A
Sbjct: 198 NYVLAKRRLIERTGPDGFAVVQLADLDILRGGSGSVRLYPLSWDKVEQGVHLDDAAQVAL 257
Query: 199 FEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ G V +L + ++++GRHN NAA+ AL L + + + I PPH
Sbjct: 258 LLMN--GSVRELFRFDQVRLLGRHNLENAAM-ALCAANLVLNRPLNGEDGRIGEFMAPPH 314
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAK---------- 304
R ++V R GVT+VDDSK TN+ AT T L LK G VILLGG+ K
Sbjct: 315 RCELVGR-YGGVTFVDDSKGTNVAATVTALRSLKCDPGGTKVILLGGRGKGEDYQVLAQT 373
Query: 305 ----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
+G G I + L G + V ++ +AV A + GD I+LSP C
Sbjct: 374 VSEECSYAVLYGEEGDRIAEALSKAGFN-RWSRVGSLDEAVRVAFQRTKEGDMILLSPAC 432
Query: 355 ASFDEFRNFEHRGMVFQELA 374
S+D++ N++ RG F+ LA
Sbjct: 433 TSWDQYPNYKERGYHFRRLA 452
>gi|94970658|ref|YP_592706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Koribacter versatilis Ellin345]
gi|122063234|sp|Q1IKG8.1|MURD_ACIBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|94552708|gb|ABF42632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Koribacter versatilis Ellin345]
Length = 453
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 182/370 (49%), Gaps = 35/370 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ AAQ +P + +A+TG+NGK+T + G +L G + VGGN+G P
Sbjct: 90 KQGIPVIGEIELAAQFVPGHV--IAITGSNGKTTTTSLCGDILQSGGKKTLVGGNIGTP- 146
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I+ +V+E+SS+Q+E + F P ++ +LN+TPDHL+RH T + Y
Sbjct: 147 ------AISFAQLANDDTWSVLEISSFQLETIER-FRPEIAAILNITPDHLDRHGTFEKY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS--FE 200
A K +F + +L N+ E K + + W VK T + F
Sbjct: 200 AAAKERIFENQREHDFAILNADNEPCVEIAKRVKSQVLWFSRQHEVKHGTFVREDKIYFR 259
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
P G + + +M + G HN N V A +G+ V E + + + HR++
Sbjct: 260 DPK-GEREIMPVADMLLKGAHNVEN--VLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAKFGYSGVL------IW 313
++GV + +DSKATN++AT L KG ++LGG+ K VL
Sbjct: 317 YTA-TVKGVDYYNDSKATNVDATIKALESFSKG--VHLILGGKDKGSPYTVLNDLLHERA 373
Query: 314 KTLVNNGLS----------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
KT+ G + + +++AV A + A GD ++L+P CASFD+F+++
Sbjct: 374 KTVYTIGAAAAKIEAEVKGVEVVHAETLENAVKLASQKAVKGDVVLLAPACASFDQFQSY 433
Query: 364 EHRGMVFQEL 373
EHRG +F+EL
Sbjct: 434 EHRGRIFKEL 443
>gi|33603175|ref|NP_890735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
bronchiseptica RB50]
gi|412341495|ref|YP_006970250.1| peptidoglycan synthesis protein [Bordetella bronchiseptica 253]
gi|427816185|ref|ZP_18983249.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
1289]
gi|62900580|sp|Q7WFS0.1|MURD_BORBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33568806|emb|CAE34564.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
RB50]
gi|408771329|emb|CCJ56129.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
253]
gi|410567185|emb|CCN24756.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
1289]
Length = 510
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 179/384 (46%), Gaps = 61/384 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALIDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLG 159
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K + +VN
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 160 L---LPFGNQHLNEAIKGHRF-------------NLAWIGAFPGVKIDTEA------KTA 197
L + Q LN G +AW+ A D A K A
Sbjct: 248 LTVAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKKDA 307
Query: 198 SFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A G +S+L + +++ G HN NA A LD+G + T+ P
Sbjct: 308 PPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAGEP 365
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------ 304
HR ++V R I V +++DSK TN+ AT L L G + V++ GGQ K
Sbjct: 366 HRAELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGKGQDFSPLVPVVR 423
Query: 305 --------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G G I K L G +PC A A+M++AV A +A GDA++LSP CAS
Sbjct: 424 RHARAVVLIGVDGAAIGKVLEPTG--VPCVAAADMREAVRRAAELAQPGDAVLLSPACAS 481
Query: 357 FDEFRNFEHRGMVF----QELAFS 376
FD FRN+ HRG VF QELA
Sbjct: 482 FDMFRNYPHRGEVFAAEVQELALD 505
>gi|410471658|ref|YP_006894939.1| peptidoglycan synthesis protein [Bordetella parapertussis Bpp5]
gi|408441768|emb|CCJ48263.1| putative peptidoglycan synthesis protein [Bordetella parapertussis
Bpp5]
Length = 510
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 179/384 (46%), Gaps = 61/384 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALMDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLG 159
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K + +VN
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 160 L---LPFGNQHLNEAIKGHRF-------------NLAWIGAFPGVKIDTEA------KTA 197
L + Q LN G +AW+ A D A K A
Sbjct: 248 LTVAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKKDA 307
Query: 198 SFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A G +S+L + +++ G HN NA A LD+G + T+ P
Sbjct: 308 PPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAGEP 365
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------ 304
HR ++V R I V +++DSK TN+ AT L L G + V++ GGQ K
Sbjct: 366 HRAELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGKGQDFSPLVPVVR 423
Query: 305 --------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G G I K L G +PC A A+M++AV A +A GDA++LSP CAS
Sbjct: 424 RHARAVVLIGVDGAAIGKVLEPTG--VPCVAAADMREAVRRAAELAQPGDAVLLSPACAS 481
Query: 357 FDEFRNFEHRGMVF----QELAFS 376
FD FRN+ HRG VF QELA
Sbjct: 482 FDMFRNYPHRGEVFAAEVQELALD 505
>gi|410421657|ref|YP_006902106.1| peptidoglycan synthesis protein [Bordetella bronchiseptica MO149]
gi|427818854|ref|ZP_18985917.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
D445]
gi|427825302|ref|ZP_18992364.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
Bbr77]
gi|408448952|emb|CCJ60638.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
MO149]
gi|410569854|emb|CCN17975.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
D445]
gi|410590567|emb|CCN05658.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
Bbr77]
Length = 510
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 179/384 (46%), Gaps = 61/384 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALMDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLG 159
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K + +VN
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 160 L---LPFGNQHLNEAIKGHRF-------------NLAWIGAFPGVKIDTEA------KTA 197
L + Q LN G +AW+ A D A K A
Sbjct: 248 LTLAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKKDA 307
Query: 198 SFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A G +S+L + +++ G HN NA A LD+G + T+ P
Sbjct: 308 PPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAGEP 365
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------ 304
HR ++V R I V +++DSK TN+ AT L L G + V++ GGQ K
Sbjct: 366 HRAELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGKGQDFSPLVPVVR 423
Query: 305 --------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G G I K L G +PC A A+M++AV A +A GDA++LSP CAS
Sbjct: 424 RHARAVVLIGVDGAAIGKVLEPTG--VPCVAAADMREAVRRAAELAQPGDAVLLSPACAS 481
Query: 357 FDEFRNFEHRGMVF----QELAFS 376
FD FRN+ HRG VF QELA
Sbjct: 482 FDMFRNYPHRGEVFAAEVQELALD 505
>gi|312880220|ref|ZP_07740020.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
paucivorans DSM 12260]
gi|310783511|gb|EFQ23909.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
paucivorans DSM 12260]
Length = 462
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 188/388 (48%), Gaps = 58/388 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G VM ELDF + + S+ L VTG+NGK+T + +G +L G+ V GN+GNP
Sbjct: 90 LSQGVEVMGELDFVSPFLRGSL--LGVTGSNGKTTTTSLIGHLLREEGVRVSVAGNIGNP 147
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L+ A + + + V E+SS+Q+ + C +++VV NL PDH++ H + +
Sbjct: 148 LASAV---------REEAEWVVAELSSFQLHWARRLRC-SLAVVTNLAPDHIDWHGSYEA 197
Query: 142 YALTKCHLFSHMVNT---------KLGLLPFGNQHLNEAIKGHRFNLAWI----GAFPGV 188
Y K +L + T +L LLP +Q + L+W G GV
Sbjct: 198 YVDAKANLVRALDPTTGMAIVQRSELPLLPPVSQTI---------PLSWTEDGEGEEGGV 248
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ + A P +G + ++G HN NAA+AA + L + + +
Sbjct: 249 TLIRSRREALLSFPGLGKRRLFSFDALSLLGDHNLENAAMAATATT-LVLKDAPKHVEEA 307
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---- 304
+ PPHR Q+V R++ V +VDDSK TN+ AT T L L G K VILLGGQ K
Sbjct: 308 LTRFVAPPHRCQLV-RELGKVRFVDDSKGTNVAATMTALTSLPGTK-VILLGGQGKGESY 365
Query: 305 ----------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
FG G I K L + G V ++ +AV A A GD++
Sbjct: 366 GSLAKAVTEWARFAVLFGEEGERIGKALDDAGYHRWSL-VRSLNEAVPLAYDKAEAGDSV 424
Query: 349 VLSPGCASFDEFRNFEHRGMVFQELAFS 376
+LSP C S+D++RN++ RG F++LA S
Sbjct: 425 LLSPACTSWDQYRNYKERGDHFRDLACS 452
>gi|158522799|ref|YP_001530669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
oleovorans Hxd3]
gi|226711907|sp|A8ZXW5.1|MURD_DESOH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|158511625|gb|ABW68592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
oleovorans Hxd3]
Length = 459
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 186/375 (49%), Gaps = 50/375 (13%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G VM E++ AA+ + + + AVTGTNGK+TV T +G ML G + FVGGN+G PL
Sbjct: 93 EKGIPVMGEMELAARFVTKPVA--AVTGTNGKTTVTTLLGDMLKASGRQVFVGGNIGAPL 150
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I +AVVEVSS+Q++ ++ F P V+V+LN+ DHL R+ Y
Sbjct: 151 -------IGFADKGENADMAVVEVSSFQLDT-SETFRPHVAVLLNIAEDHLARYVDFNAY 202
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDT--EAK 195
+K +F + + ++ + H+ +A KG R FN V DT E
Sbjct: 203 VRSKGRIFENQEADDVAVINGADFHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIV 262
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
TA + + V S L + RHN N +AA ++ L +G VE + + ++ +
Sbjct: 263 TAGTKTATISVTSPL------MRARHNMEN--IAAATLAALAMGATVEGIQAAVDGFQGL 314
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKT 315
HR++ V I V + DDSKATN +A L + + V+LLGG+ K GVL K
Sbjct: 315 RHRLEYVA-SIDDVHYFDDSKATNPDAVRRAL-EFFTSRVVLLLGGEDKGCDYGVL--KN 370
Query: 316 LVN--------------------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
++ NG S+ + +M +AV A +A GDA++LSP C+
Sbjct: 371 VIRERARAVVLFGAAKEKIRMAING-SVSLWDAGSMAEAVRRAHELAAPGDAVLLSPACS 429
Query: 356 SFDEFRNFEHRGMVF 370
SFD + ++ HRG F
Sbjct: 430 SFDSYESYAHRGDDF 444
>gi|33593956|ref|NP_881600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
pertussis Tohama I]
gi|384205260|ref|YP_005590999.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
pertussis CS]
gi|62900577|sp|Q7VUQ1.1|MURD_BORPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33564030|emb|CAE43296.1| putative peptidoglycan synthesis protein [Bordetella pertussis
Tohama I]
gi|332383374|gb|AEE68221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
pertussis CS]
Length = 510
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 128/384 (33%), Positives = 179/384 (46%), Gaps = 61/384 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALMDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLG 159
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K + +VN
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 160 L---LPFGNQHLNEAIKGHRF-------------NLAWIGAFPGVKIDTEA------KTA 197
L + Q LN G +AW+ A D A K A
Sbjct: 248 LAVAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKKDA 307
Query: 198 SFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A G +S+L + +++ G HN NA A LD+G + T+ P
Sbjct: 308 PPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAGEP 365
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------ 304
HR ++V R I V +++DSK TN+ AT L L G + V++ GGQ K
Sbjct: 366 HRAELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGKGQDFSPLVPVVR 423
Query: 305 --------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G G I K L G +PC A A+M++AV A +A GDA++LSP CAS
Sbjct: 424 RHARAVVLIGVDGAAIGKVLEPTG--VPCAAAADMREAVRRAAELAQPGDAVLLSPACAS 481
Query: 357 FDEFRNFEHRGMVF----QELAFS 376
FD FRN+ HRG VF +ELA
Sbjct: 482 FDMFRNYPHRGEVFAAEVRELALD 505
>gi|408416919|ref|YP_006627626.1| peptidoglycan synthesis protein [Bordetella pertussis 18323]
gi|401779089|emb|CCJ64572.1| putative peptidoglycan synthesis protein [Bordetella pertussis
18323]
Length = 510
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 128/384 (33%), Positives = 179/384 (46%), Gaps = 61/384 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+TV Q++ G+ A GN+ +P + AA P QV V
Sbjct: 132 RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNI-SPAALAALMDALDQDDLP--QVWV 188
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLG 159
+E+SS+Q+E + P +VVLN+T DHL+ H M+ YA K + +VN
Sbjct: 189 LELSSFQLET-TRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLAIVNRDDP 247
Query: 160 L---LPFGNQHLNEAIKGHRF-------------NLAWIGAFPGVKIDTEA------KTA 197
L + Q LN G +AW+ A D A K A
Sbjct: 248 LTVAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKKDA 307
Query: 198 SFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A G +S+L + +++ G HN NA A LD+G + T+ P
Sbjct: 308 PPPTRAGGRMSRLMPVDVLRIRGVHNALNALAAMQLARSLDLGWG--PMLRTLRDYAGEP 365
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------ 304
HR ++V R I V +++DSK TN+ AT L L G + V++ GGQ K
Sbjct: 366 HRAELV-RSIGDVDYINDSKGTNVGATVAALEGL-GQQVVLIAGGQGKGQDFSPLVPVVR 423
Query: 305 --------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G G I K L G +PC A A+M++AV A +A GDA++LSP CAS
Sbjct: 424 RHARAVVLIGVDGAAIGKVLEPTG--VPCVAAADMREAVRRAAELAQPGDAVLLSPACAS 481
Query: 357 FDEFRNFEHRGMVF----QELAFS 376
FD FRN+ HRG VF +ELA
Sbjct: 482 FDMFRNYPHRGEVFAAEVRELALD 505
>gi|33861920|ref|NP_893481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|60390532|sp|Q7V0A5.1|MURD_PROMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33640288|emb|CAE19823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 473
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 184/385 (47%), Gaps = 48/385 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+ E++ A + + ++I + +TGTNGK+TV + +L + A GN+G
Sbjct: 99 LKERGIVVIGEINIAWESL-KNINWIGITGTNGKTTVTHLLSHILRENNLFAPFAGNIGT 157
Query: 81 PLSEAAFHCIALPSSKPK-FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
PL E A+ S+K K V E+SS+Q+EI P + + TPDHL+RHKT+
Sbjct: 158 PLCEIAY------STKSKNIDWIVAELSSFQIEIATHCIKPKIGIWTTFTPDHLDRHKTL 211
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
NY K L ++ + + +Q+L E K N WI P V +++ +
Sbjct: 212 DNYFKIKNSLLKQ---SEFRIYNYDDQYLKENFKS-LLNGIWITTNPNV---SDSDHCDY 264
Query: 200 EVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + + L L N K+ G HN N +A + IG+ E + + +
Sbjct: 265 WINNENFIVERREKLLSLKNFKLKGNHNTQNLLLAVAA--ARKIGLSTERIKNALLSYEQ 322
Query: 255 PPHRMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
PHRM+ I RD + ++DSKATN +++ G+ +KG +I+ GG+ K
Sbjct: 323 LPHRMETIFQRDELEI--INDSKATNFDSSVAGINAIKGSP-IIISGGRLKNGDSIEWVK 379
Query: 305 -----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN--GDAIVLS 351
FG S + K ++ G ++ + +N+A N + ++ S
Sbjct: 380 IINKKAKAVFLFGESSQTLKKLILEGGFKNDILTFNDLSEVINYAYSYIKNNQSETLLFS 439
Query: 352 PGCASFDEFRNFEHRGMVFQELAFS 376
P C+SFD+FR++E RG +F++L +
Sbjct: 440 PSCSSFDQFRDYEQRGDIFKKLIYE 464
>gi|444914629|ref|ZP_21234771.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cystobacter fuscus
DSM 2262]
gi|444714488|gb|ELW55369.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cystobacter fuscus
DSM 2262]
Length = 458
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 179/381 (46%), Gaps = 38/381 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L + +G V E++ A++ + + +L +TGTNGKST G++ G FVGGN
Sbjct: 87 LQSVRAAGVPVWGEVELASRFLAH-VPLLGITGTNGKSTTTALTGELFARGGRRTFVGGN 145
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG PLSEAA S + VVE+SS+Q+E + P S +LNLTPDHL+R+
Sbjct: 146 LGRPLSEAAL-------SPGDWDALVVELSSFQLEGIDT-LRPKGSAILNLTPDHLDRYA 197
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRFNLAWIG----AFPGVKI 190
Y K +F + ++ + L EA + + + G + P +
Sbjct: 198 DHAAYGAAKARIFKNQAAGDFAVVNADDADVMRLAEAARVPVYGFSLTGRPVVSAPVLAG 257
Query: 191 DTEAKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
A+ F VG + L N + G HN NA AAL GV E + + +
Sbjct: 258 LAVARPGGFGFTGVGEADESFTLTNRALRGGHNAQNAMAAALLA--RLAGVSHEGVQAGL 315
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG 309
+ PHR++ V R + GV WV+DSKATN+++ L +++ GG+ K
Sbjct: 316 DSYPGLPHRLESV-RVLGGVEWVNDSKATNVDSVLVALRAFS-RDVLLIAGGKGKGAPYA 373
Query: 310 VLIW------KTLVNNGLSIPCFAVA-----------NMKDAVNHARRMATNGDAIVLSP 352
++ K ++ G A A + AV AR +A GD ++LSP
Sbjct: 374 PMVEEGRGKVKMVLTIGQDAELLARAYEGAATVHACGTLAQAVRRARELAVAGDTVLLSP 433
Query: 353 GCASFDEFRNFEHRGMVFQEL 373
CAS+D+F+NFEHRG F+ L
Sbjct: 434 ACASYDQFQNFEHRGDTFKRL 454
>gi|54298605|ref|YP_124974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
pneumophila str. Paris]
gi|62900489|sp|Q5X1S4.1|MURD_LEGPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|53752390|emb|CAH13822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
pneumophila str. Paris]
Length = 447
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 187/386 (48%), Gaps = 70/386 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P T+ K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQTDIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAK-------------FGYSGVLIWKTL--VNNGLS--IPCFAVANMKDAVNHARRMATN 344
Q K F S VLI + + + L+ +P ++++ AV A+ A
Sbjct: 355 QGKGADFQELAQPVSEFVRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKP 414
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVF 370
GD ++LSP CAS D FR+F HRG VF
Sbjct: 415 GDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|148358649|ref|YP_001249856.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
str. Corby]
gi|296108261|ref|YP_003619962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
pneumophila 2300/99 Alcoy]
gi|148280422|gb|ABQ54510.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
str. Corby]
gi|295650163|gb|ADG26010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
pneumophila 2300/99 Alcoy]
Length = 447
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 187/386 (48%), Gaps = 70/386 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K ++S K FN + P + K SF +
Sbjct: 197 TQAKQRIYS-------------------GAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAK-------------FGYSGVLIWKTL--VNNGLS--IPCFAVANMKDAVNHARRMATN 344
Q K F S VLI + + + L+ +P ++++ AV A+ A
Sbjct: 355 QGKGADFQELAQPVSEFVRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKP 414
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVF 370
GD ++LSP CAS D FR+F HRG VF
Sbjct: 415 GDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|406939065|gb|EKD72162.1| hypothetical protein ACD_45C00746G0002 [uncultured bacterium]
Length = 443
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 184/376 (48%), Gaps = 49/376 (13%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G ++ +++ A+ ++ ++A+TGTN KSTV T VG+M G EA GGNLG P
Sbjct: 87 ERGAHIIGDIELFARAA--TMPVIAITGTNAKSTVTTLVGKMAEAAGFEAQTGGNLGVP- 143
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ L P + V+E+SS+Q+E + P V+ VLN+TPDH++R++T+K+Y
Sbjct: 144 ------ALDLLEKNPATNLFVLELSSFQLETTHS-LKPQVATVLNITPDHMDRYETLKHY 196
Query: 143 ALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTA 197
K ++ H + N L +A++ F L G G+ +
Sbjct: 197 RQAKLRVYQHCSVAVCNRDDTLTDV------DALRKITFTLQTPGKNEFGLLVKNGKTYL 250
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE ++ L + + ++G+H Y A+A+L++ G G+ + + PH
Sbjct: 251 TFEDQSL-----LAIDELPIVGKH-YQANALASLAI-GYGFGLPFAPMIKVLREFTGLPH 303
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQA----------- 303
R Q V R+ GV W +DSK TN+ AT + L K +++ GG
Sbjct: 304 RCQFV-RERDGVRWYNDSKGTNVGATQAAIEGLGSEISGKLILIAGGVGKNADFHPMVPI 362
Query: 304 --KFGYSGVLIW---KTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
K+ VLI K L G I +M +AV + A GD+++LSP CASF
Sbjct: 363 IEKYARHVVLIGEAAKELSEAIGDRINISYAKSMDEAVVQSSNAAKPGDSVLLSPACASF 422
Query: 358 DEFRNFEHRGMVFQEL 373
D F+N+EHRG VF E+
Sbjct: 423 DMFKNYEHRGQVFTEI 438
>gi|307611494|emb|CBX01167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
pneumophila 130b]
Length = 447
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 186/386 (48%), Gaps = 70/386 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAK-------------FGYSGVLIWKTL--VNNGLS--IPCFAVANMKDAVNHARRMATN 344
Q K F S VLI + + + L+ +P ++++ AV A+ A
Sbjct: 355 QGKGADFQELAQPVSEFVRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKP 414
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVF 370
GD ++LSP CAS D FR+F HRG VF
Sbjct: 415 GDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|52842822|ref|YP_096621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|378778511|ref|YP_005186950.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
subsp. pneumophila ATCC 43290]
gi|62900494|sp|Q5ZSA3.1|MURD_LEGPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|52629933|gb|AAU28674.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|364509327|gb|AEW52851.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
subsp. pneumophila ATCC 43290]
Length = 447
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 186/386 (48%), Gaps = 70/386 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAK-------------FGYSGVLIWKTL--VNNGLS--IPCFAVANMKDAVNHARRMATN 344
Q K F S VLI + + + L+ +P ++++ AV A+ A
Sbjct: 355 QGKGADFQELAQPVSEFVRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKP 414
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVF 370
GD ++LSP CAS D FR+F HRG VF
Sbjct: 415 GDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|397668289|ref|YP_006509826.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Legionella
pneumophila subsp. pneumophila]
gi|395131700|emb|CCD09993.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Legionella
pneumophila subsp. pneumophila]
Length = 447
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 186/386 (48%), Gaps = 70/386 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAK-------------FGYSGVLIWKTL--VNNGLS--IPCFAVANMKDAVNHARRMATN 344
Q K F S VLI + + + L+ +P ++++ AV A+ A
Sbjct: 355 QGKGADFQELAQPVSEFVRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKP 414
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVF 370
GD ++LSP CAS D FR+F HRG VF
Sbjct: 415 GDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|429462548|ref|YP_007184011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811697|ref|YP_007448152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338062|gb|AFZ82485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776855|gb|AGF47854.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 498
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 187/374 (50%), Gaps = 57/374 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI---ALPSSKPKFQ 100
KI+A+TGTNGK+TV + ++L G+ GN+G P+ +A + LP +
Sbjct: 127 KIIAITGTNGKTTVTSLTYEILKKSGVLVCKAGNIGPPVLKALMDEVEQDVLP------E 180
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF---------- 150
V V+E+SS+Q+ K CP VSVVLNL DH++ H T+ +Y TK +L
Sbjct: 181 VWVLEISSFQLYTI-KSLCPDVSVVLNLDFDHIDWHGTVDSYWETKVNLLRISKTSIINR 239
Query: 151 ------SHMVNTKLGLLPFGNQ-HLNEAIKG--HRFNLAWIGAFPGVKIDTEAKTASFEV 201
M+N+K+ FG+ +++ G R + W+ F K ++ K ++ +
Sbjct: 240 NDHVLMQKMLNSKIDSYSFGSDVPTHDSCFGLVTREDSKWLVVFIEKKSNSLCKISNDDF 299
Query: 202 PAVGVVSQ------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ + L+ + +K+ G HNY N +A+L ++ + + L + + L
Sbjct: 300 NYKEDLKKGFNCYLLKSNLLKIRGIHNYTNV-LASLQLISFIMPLTSSMLKTACDYL-GE 357
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLI 312
PHR+Q V +I GV++ DDSK TN+ AT T L K ++++GG K F Y I
Sbjct: 358 PHRIQFV-AEIGGVSYFDDSKGTNISATITALKSFD-KKTILIMGGVGKNQDFSYICSTI 415
Query: 313 W---KTLVNNGL------------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
K ++ G+ ++PCF M+DAV A A+ GD ++LSP CASF
Sbjct: 416 AEYAKIVILIGVDSSEIFEAIKIANVPCFFSFTMEDAVLKASSYASRGDVVLLSPACASF 475
Query: 358 DEFRNFEHRGMVFQ 371
D F N+ HRG VF
Sbjct: 476 DMFDNYSHRGNVFS 489
>gi|229815102|ref|ZP_04445439.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
13280]
gi|229809332|gb|EEP45097.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
13280]
Length = 468
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 185/375 (49%), Gaps = 40/375 (10%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+ ++M E +FA + P + A+TGTNGK+TV + ++L G+++ GN+GN
Sbjct: 93 ASSQIMGEPEFAWLLSPE--RWCAITGTNGKTTVTSLTDELLRASGLDSVAVGNIGN--- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
A H + + + + V E+SSYQ+ + F P V+V+LNL+PDHL H++ +NYA
Sbjct: 148 -APIHEV---DRREEGEWFVAELSSYQLAT-TEAFHPRVAVLLNLSPDHLAWHRSHENYA 202
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQ----HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
L K +F +M + + ++ ++ +L+ R L A G +
Sbjct: 203 LAKIRMFKNMDDGDIAIVNVEDEGLSPYLDRICGPGRRVLHLGFADDGAADAAFVRDDVL 262
Query: 200 EVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
V G L ++ ++++G HN NA A+ + L G V + S + + PHR
Sbjct: 263 TVRMAGDEHALVRVDELRIVGAHNVLNALAASAAALA--CGASVTGVCSGLREFKPLPHR 320
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
++ V + GV +V+DSKATN +A T L G + V+LLGG K
Sbjct: 321 LEPVDT-VDGVRYVNDSKATNTDAVLTALAAFDGARIVLLLGGSDKGTPLEEFMAKVASR 379
Query: 305 ------FGYSGVLIWKTLVN--NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
FG + + L++ I +++DAV+ AR +A GD ++LSP CAS
Sbjct: 380 VACVVCFGEARERLRTALMDAPGATDIDIAEAEDLRDAVDVARSLAQRGDTVLLSPACAS 439
Query: 357 FDEFRNFEHRGMVFQ 371
FDEF FE RG F+
Sbjct: 440 FDEFSGFEERGEAFR 454
>gi|54295453|ref|YP_127868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
pneumophila str. Lens]
gi|62900487|sp|Q5WTI5.1|MURD_LEGPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|53755285|emb|CAH16779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
pneumophila str. Lens]
Length = 447
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 186/386 (48%), Gaps = 70/386 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGALIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAK-------------FGYSGVLIWKTL--VNNGLS--IPCFAVANMKDAVNHARRMATN 344
Q K F S VLI + + + L+ +P ++++ AV A+ A
Sbjct: 355 QGKGADFQELAQPVSEFVRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKP 414
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVF 370
GD ++LSP CAS D FR+F HRG VF
Sbjct: 415 GDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|397665206|ref|YP_006506744.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Legionella
pneumophila subsp. pneumophila]
gi|395128617|emb|CCD06835.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Legionella
pneumophila subsp. pneumophila]
Length = 447
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 185/386 (47%), Gaps = 70/386 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QLGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K ++ K FN + P + K SF +
Sbjct: 197 TQAKHRIY-------------------RGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
PA+G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APAMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAK-------------FGYSGVLIWKTL--VNNGLS--IPCFAVANMKDAVNHARRMATN 344
Q K F S VLI + + + L+ +P ++++ AV A+ A
Sbjct: 355 QGKGADFQELAQPVSEFVRSIVLIGEDADKIESALAKVVPVMRASSLEGAVTIAKTCAKP 414
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVF 370
GD ++LSP CAS D FR+F HRG VF
Sbjct: 415 GDVVLLSPACASLDMFRDFNHRGDVF 440
>gi|189485185|ref|YP_001956126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
group 1 bacterium phylotype Rs-D17]
gi|170287144|dbj|BAG13665.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
group 1 bacterium phylotype Rs-D17]
Length = 441
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 187/377 (49%), Gaps = 53/377 (14%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++MSEL F+ + + KI+AV+GTNGK+TV + +++ ++ V GN+G PL++ A
Sbjct: 84 KIMSELAFSLEN-SKYKKIMAVSGTNGKTTVTDLISKIIKAAHKDSIVSGNIGCPLADKA 142
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
L +++ F +E+SSYQ+ + P+ F P +SV+LN+TPDHLE HKTMK Y
Sbjct: 143 -----LKTTETTF--ITMELSSYQLGDTPD--FRPAISVLLNITPDHLEYHKTMKAYLRA 193
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K ++F + + ++ + ++ + + + + + P K F
Sbjct: 194 KENIFINQRDGDFTVINYDDKICRKIFEKTKAAVIFFSKTP-------LKKGVFYDSGSI 246
Query: 206 VVSQLQLH-----NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
V++ + H + ++G HN N + A GV + + + HR++
Sbjct: 247 VINVKEKHYVIKPKINIVGTHNIEN--ILAAVAASYAAGVKPAVIEKIVSKYKGVEHRIE 304
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---------------- 304
V + + GV + +DSK+TN+++T L + +I++GG+ K
Sbjct: 305 FV-KTLNGVDYYNDSKSTNIDSTRVALESFDKN-ILIIMGGRDKGVPYTPLKELVKQRVK 362
Query: 305 ----FGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G + I K L NG S + C NM++AV R A D +LSP CASFD+
Sbjct: 363 LIFLIGEASDKIKKDL--NGASFVDC---GNMENAVKQIFRTAVRADIALLSPACASFDQ 417
Query: 360 FRNFEHRGMVFQELAFS 376
F NFE RG VF+++ S
Sbjct: 418 FENFEERGKVFKKMVLS 434
>gi|319938114|ref|ZP_08012512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
29_1]
gi|319806635|gb|EFW03284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
29_1]
Length = 447
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 188/372 (50%), Gaps = 35/372 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V +E++ A + + + +A+TGTNGK+T VT + +L + G + + GN+G
Sbjct: 87 LKERGIPVYTEIELAYR-LSQPQNYIAITGTNGKTTTVTLIRDILKNAGRQVCLAGNVGT 145
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PLSE + L K + V V+E+S++Q+ + F P V+ ++NLTPDHL+ +++
Sbjct: 146 PLSELVLNEDLL--HKSDYDV-VLEMSNFQL-LDIDAFHPRVATIINLTPDHLDYMASLE 201
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
Y +K ++ + + + L + L E ++ + + + D K +
Sbjct: 202 EYYTSKTRIYMNQDHNDIYLQNKDDVVLKEYLQKYPPQAKIVSFSLEQEADCMIKNDAIY 261
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+++ L ++K++GRHN N +A + + G+DV++++ T+ HR++
Sbjct: 262 YQGQHIIN---LDDIKIVGRHNIQNMMIAICACIHS--GIDVQSIHDTLAAFTGVEHRIE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---------------- 304
V R+ QGV + +DSKATN +A L + ++L+GG K
Sbjct: 317 FV-REYQGVKYYNDSKATNTDAAIIALKSFE-KPVILLMGGHEKGLDLREMANYQKQISH 374
Query: 305 ---FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
FG +G K + I V MKDA+ A+ +A +GD ++LSP +S+DEF
Sbjct: 375 LICFGEAGERFAKDMKCPNTDI----VKYMKDAIIKAKELAKSGDVVLLSPSTSSYDEFS 430
Query: 362 NFEHRGMVFQEL 373
+E RG VF+ +
Sbjct: 431 GYEERGNVFKHI 442
>gi|374312764|ref|YP_005059194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Granulicella
mallensis MP5ACTX8]
gi|358754774|gb|AEU38164.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Granulicella
mallensis MP5ACTX8]
Length = 450
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 180/374 (48%), Gaps = 38/374 (10%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ EL+ AQ + +++ +TG+NGK+T T +G++ G VGGN+G P++E
Sbjct: 91 GMHIIGELELGAQFL--QGEVVGITGSNGKTTTTTLMGEIFKAAGRPTLVGGNIGKPVTE 148
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ S P+ +V+EVSS+Q+E F P +++VLN+TPDHL+RH +NYA
Sbjct: 149 L------VGESTPE-AWSVLEVSSFQLETVES-FRPRIAMVLNITPDHLDRHGNFENYAA 200
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS-FEVPA 203
K + +L ++ + + W VK + F P+
Sbjct: 201 AKARITEFQTAEDFLILNAEDKPTQMVAAKTKAQIYWFSPRRQVKQGAFVHGETIFFTPS 260
Query: 204 VGVVSQ--LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
G + + + + + G HN N AAV A + GV E + + + + HR+
Sbjct: 261 EGAKPEPVMPVAEIPLAGAHNVENVLAAVCAARL----AGVASETIRAAVAAFKAVEHRL 316
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVL--IWKTLV 317
+ V R+ GV + +DSKATN++AT + G + ++LGG+ K V+ + + V
Sbjct: 317 EFV-REHNGVRYYNDSKATNVDATVKAVEAFAG-RIYLILGGKDKDSDYAVMGPLLRERV 374
Query: 318 NNGLSIPCFA---------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
++I A M AV A A GD ++L+P CASFD+F+N
Sbjct: 375 KMVITIGSAAEKIEHQLAGVVKIERAETMDRAVALAHEAAVAGDTVLLAPACASFDQFQN 434
Query: 363 FEHRGMVFQELAFS 376
+EHRG F+ L +
Sbjct: 435 YEHRGHAFKSLVLA 448
>gi|381153305|ref|ZP_09865174.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylomicrobium
album BG8]
gi|380885277|gb|EIC31154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylomicrobium
album BG8]
Length = 456
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 180/382 (47%), Gaps = 52/382 (13%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L +A + +G ++S++D A I+A+TG+NGKSTV T +G+M G
Sbjct: 94 LTEPAIAQAIANGSVLVSDIDLFA--CSTHAPIVAITGSNGKSTVTTMLGEMAKTSGKLV 151
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
VGGNLG AA + P+ + V+E+SS+Q+E V+ VLN++ DH
Sbjct: 152 GVGGNLGT----AALELLDTPAD-----LFVLELSSFQLE-RTTVLNAAVATVLNISADH 201
Query: 133 LERHKTMKNYALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188
L+RH+ ++ YA K +F ++N P N + + + +++ F
Sbjct: 202 LDRHRDVEEYAAVKQRIFDGNGVMVINADD---PRVNAMRRKGRRTYAYSIKEAADF--- 255
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
AK E G + L + + GRHN NA A G +G++ EA+
Sbjct: 256 ---ALAKIKGVECLVYGGKKLMALSELPLEGRHNAANALAALAL--GTAVGLNPEAMCDA 310
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---- 304
+ R PHRMQ V + I VTW++DSKATN+ A C + K ++L GG AK
Sbjct: 311 LRRFRGLPHRMQKVAK-IDEVTWINDSKATNIGA-CVAALQGYERKVILLAGGDAKGADM 368
Query: 305 ----------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
G LI + L G +P NM++AV A A GD +
Sbjct: 369 RELLPAVQEKVKSIVLMGKDADLIEQAL---GGCVPVLRAENMREAVRLAAGQAQRGDTV 425
Query: 349 VLSPGCASFDEFRNFEHRGMVF 370
+LSP CAS D+++N++ RG VF
Sbjct: 426 LLSPACASLDQYKNYQERGEVF 447
>gi|300857279|ref|YP_003782263.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
ljungdahlii DSM 13528]
gi|300437394|gb|ADK17161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
ljungdahlii DSM 13528]
Length = 458
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 194/397 (48%), Gaps = 65/397 (16%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
++ + L Q+G V SE++ + P KI VTG++GK+T T + ML G +
Sbjct: 88 RIDSPALVKAKQNGAYVTSEMEEFIKYCP--AKIYGVTGSDGKTTTTTLIYNMLKEQGYK 145
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ---MEIPNKYFCPTVSVVLNL 128
++VGGN+G PL F I + K V+E+SS+Q M++ P V+V+ N+
Sbjct: 146 SWVGGNIGAPL----FSRIEEIDPEDK---VVLELSSFQLMGMDV-----SPEVAVITNI 193
Query: 129 TPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188
+P+HL+ HK M+ Y K +F + N + +L N+ N +K + G
Sbjct: 194 SPNHLDIHKDMEEYVNAKKSIFKYQGNQDVVILNRDNECTNAMVKEAK------GKVRQF 247
Query: 189 KIDTEAKTASF---EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD-VEA 244
I+ E + + ++ + ++ +K+ G HN N + A S + D+ VD ++
Sbjct: 248 SIEEELTSGGYLKGDILCIDGKKVCKISEVKLRGMHNVANL-LTAFSAIKEDVSVDNMKK 306
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ-- 302
+ +T E + HR + V R++ GV + +DS A++ T GL K VIL+ G
Sbjct: 307 VATTFEGVE---HRCEFV-RELDGVKYYNDSIASSPTRTLAGLRAF--DKPVILIAGGYD 360
Query: 303 --------AKFGYSGVLIWKTLV------------------NNGLSIPCFAVANMKDAVN 336
A+ GYS + KTL+ G+ +P +V ++ DAVN
Sbjct: 361 KKIPFDVLAEEGYSKI---KTLILMGATKDKIKKSFEKLKCEKGIDVPIVSVDSLTDAVN 417
Query: 337 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
A+ ++TNGD + SP CASFD F NFE RG F+++
Sbjct: 418 VAKELSTNGDIVTFSPACASFDMFPNFEVRGNAFKDI 454
>gi|429727328|ref|ZP_19262102.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus anaerobius VPI 4330]
gi|429152780|gb|EKX95590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus anaerobius VPI 4330]
Length = 457
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 195/374 (52%), Gaps = 42/374 (11%)
Query: 26 KRVMSELDFAAQV-IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
K+V+SE++ A Q + ++I+ + +TGTNGK+T + VG++ G+E +V GN+GNP
Sbjct: 94 KKVISEIELAYQAGLKKNIRFVGITGTNGKTTTTSLVGEIFKAQGVETYVVGNIGNP--- 150
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A + + V V E+SS+Q+E + F PT S VLNLT DHL RH TM+NYA+
Sbjct: 151 -AIEAVEMAGDGA---VLVTELSSFQLESID-MFSPTASTVLNLTEDHLNRHHTMENYAM 205
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----GVKIDTEAK-TASF 199
K +F + ++ + +L + + +G ++ + G+ +D + +
Sbjct: 206 AKARIFENQIDDTVCILNYDDLTTRSMAEGCHADVVFFSRKDKFERGIYLDDDNNIIVNN 265
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E+ + + L+ + + G HN N +AA+ L L +GV++E L ++ + HR+
Sbjct: 266 EIEEIAL---LKADELSLPGGHNLEN-CMAAIG-LTLALGVEIEVLVKVLKTFKAVEHRL 320
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------------- 304
+ V ++GV +V+DSK TN ++T + K +++ GG K
Sbjct: 321 EYVDT-VKGVKYVNDSKGTNPDSTIKAVQSYK-DPIILIAGGYDKGSDFNELFEIAKDYV 378
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G +G LI +T +G + + V ++K+AV + ++A D ++LSP CAS+
Sbjct: 379 RSVVILGQTGDLIEETARKHGFT-DLYRVNDLKEAVEKSAQIANEKDIVLLSPACASWGM 437
Query: 360 FRNFEHRGMVFQEL 373
+ N+E RG F+ L
Sbjct: 438 YNNYEERGREFKNL 451
>gi|189462921|ref|ZP_03011706.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
gi|189430348|gb|EDU99332.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
coprocola DSM 17136]
Length = 444
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 191/378 (50%), Gaps = 47/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKEQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDYK 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I GH + A G+ E
Sbjct: 191 MQNYVDAKFRIIQNQTDNDAFIFWNDDPVIQKELHKYGIHGHYYPFAEKKE-EGLAAFVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEIL 252
F P + ++ + + G HN N+ A +S +I G+ E + +
Sbjct: 250 QNKVYFTKP---IEFNMEQEELALTGTHNLFNSMAAGISA---NIAGIRKECIREALSDF 303
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV- 310
+ HR++ V R ++GV +++DSKATN+ + L +K K V++LGG+ K Y+ +
Sbjct: 304 KGVEHRLEKVTR-VRGVDYINDSKATNVNSCWYALNSMKT-KTVLILGGKDKGNDYNEIA 361
Query: 311 ---------LIWKTLVN-------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
LI+ L N +G +P V +MKDAV+ A RMA G+ ++LSP C
Sbjct: 362 DLVKEKCSGLIFLGLHNEKLHDFFDGFGLPIADVQSMKDAVDAAYRMAKKGETVLLSPCC 421
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F+++E RG F+E
Sbjct: 422 ASFDLFKSYEDRGDQFKE 439
>gi|225850179|ref|YP_002730413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
marina EX-H1]
gi|225646272|gb|ACO04458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
marina EX-H1]
Length = 419
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 180/364 (49%), Gaps = 36/364 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ E++F+ + S+ +AVTGT+GKST + ++ +A +GGN G P S+
Sbjct: 67 VVGEIEFSYRFFDGSV--IAVTGTDGKSTTSKLIHHIIGEE--KADIGGNYGTPFSDIV- 121
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
S+ K V+E+SS+Q+ + F P ++V LN PDHL+ HK + +Y L+K
Sbjct: 122 -------SEGK-DTVVLELSSFQI-YSTEMFRPDIAVFLNFYPDHLDWHKKLLHYRLSKY 172
Query: 148 HLFSHMVNTKLGLLPFGNQHL-NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
LF +M +L F +Q + N KG R+ + + P + + G
Sbjct: 173 RLFRNMKEEDPAVLNFDDQVVRNTPKKGKRYYFS-LSPLPDNLEGAYYDGSEIVLKINGF 231
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L ++ + G HN N + A V G+D E + ++ + PHRM+ V I
Sbjct: 232 KFKFGLSDIHLKGIHNIQN--IMASVVTAYIYGIDPETIEERLKSFKPLPHRMEYVGS-I 288
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV------------LIW 313
GV + +DSKAT ++A + G + +++ GG K G +S + +I
Sbjct: 289 NGVDFYNDSKATTVQAVKKAVQSFDGKRVILITGGINKGGDFSDLRDELLNSVKEVFIIG 348
Query: 314 KTLVNNGLSIPCFAVANMK----DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 369
+ + I + A +K DAVN A + A GD I+LSPGCASFD F+N++ RG +
Sbjct: 349 RDRKSIYSMIKDYVKAEIKESLEDAVNTAFKKAEKGDVILLSPGCASFDMFKNYQERGEI 408
Query: 370 FQEL 373
F+ +
Sbjct: 409 FKSI 412
>gi|390959238|ref|YP_006422995.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Terriglobus roseus
DSM 18391]
gi|390414156|gb|AFL89660.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Terriglobus roseus
DSM 18391]
Length = 450
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 170/356 (47%), Gaps = 44/356 (12%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++A+TG+NGK+T + VG +L H G+E VGGN+G P+ E L + +V
Sbjct: 109 RVVAITGSNGKTTTTSLVGHILEHAGLETKVGGNIGLPVVE-------LVEGSTEKTWSV 161
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+EVSS+Q+E + F P ++ VLN+TPDHL+RH + +NYA K + + +L
Sbjct: 162 LEVSSFQLET-IETFRPHIAAVLNITPDHLDRHGSFENYAAAKARITENQTAEDFLVLNA 220
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV----------SQLQLH 213
++ + + W F GV+ K +F V A GV + +
Sbjct: 221 EDKPTQMVAAKTKPQIYW---FSGVR---RVKQGAF-VHADGVYFLAKEGGTPEPVMPVA 273
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
+ + G HN N +AA+++ L GV E + + HR+Q V R ++GV + +
Sbjct: 274 EIPLPGAHNVEN-VLAAIAMARL-AGVSAEVVREAVGTFTAVEHRLQFV-RSVRGVDYYN 330
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVL----------------IWKTLV 317
DSKATN++AT L G VIL G Y+ +L
Sbjct: 331 DSKATNVDATAKALASFAGGVRVILGGKDKGSDYTELLPLLKERTVAVYTIGAAAEIIAA 390
Query: 318 NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G + + +AV A A G+ ++L+P CASFD+F ++E RG VF EL
Sbjct: 391 QIGSEVSLTPAGTLAEAVRMASAEAKAGETVLLAPACASFDQFTSYEDRGRVFMEL 446
>gi|162449933|ref|YP_001612300.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sorangium
cellulosum So ce56]
gi|161160515|emb|CAN91820.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sorangium
cellulosum So ce56]
Length = 456
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 176/371 (47%), Gaps = 37/371 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L + +SG+ V+ EL+ A++ + S ++ V GTNGKST G ML G+ FVGGN
Sbjct: 85 LDAVARSGREVIGELELASRFV--SAPVVLVGGTNGKSTTTALTGAMLERAGLRTFVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
G PL+E + V V+E+SS+Q E +P + +LN+T DHL+R+
Sbjct: 143 FGTPLAEVVDQT---------WDVLVLEISSFQAERVPTLH--ARAHALLNITDDHLDRY 191
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
+ YA K + F M + ++PFG++ + R + A + D A
Sbjct: 192 ASFAAYADAKGNPFERMTPDDVAVVPFGDELVARQAARGRARVVTFSARD-ARADVSAAG 250
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ G ++ L +++ G HN NA +A +G A+ +
Sbjct: 251 GAIVDRVTG--ARYPLDRVRLAGAHNLANACASAALA--AALGAPAAAIGDALSSFEGLA 306
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI---- 312
HR +V D+ GV + DDSK TN+ A+ L L K V++ GG+ K G L+
Sbjct: 307 HRTALVA-DVDGVRYYDDSKGTNVGASVAALSGLLEAKAVLIAGGRDKLGDYAPLVSALR 365
Query: 313 --WKTLVNNGLS-----------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
+ LV G + +P +M +AV AR +A GDA++LSP C+SFD
Sbjct: 366 ERGRALVVLGEAADRIAAAAAGVLPIARAGSMAEAVLAARSLARPGDAVLLSPACSSFDM 425
Query: 360 FRNFEHRGMVF 370
FR+++ RG F
Sbjct: 426 FRDYKDRGDAF 436
>gi|337755807|ref|YP_004648318.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella sp.
TX077308]
gi|336447412|gb|AEI36718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella sp.
TX077308]
Length = 414
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 182/367 (49%), Gaps = 55/367 (14%)
Query: 26 KRVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++++S++D Q I + K++AVTG+NGKST+VT + +L LG ++ + GN+G P
Sbjct: 79 QKIVSDIDLFYQSIRNTKAKMIAVTGSNGKSTIVTMLDFVLRDLGYKSILVGNIGTP--- 135
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L +F VVEVSS+Q+++ N + V+N++PDHL+R+ + Y
Sbjct: 136 ------PLNKIGERFDYCVVEVSSFQIDLFNSVEFD-LGCVINVSPDHLDRYNNYEEYK- 187
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+KL L F N + H L + G + V+ S A
Sbjct: 188 ----------QSKLNLAKFSNDFFVYDV--HNNGLKYAGEYQIVR-------GSIYKNAT 228
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ L ++ + G HN N V L++ G+D + ++++ + HR ++V +
Sbjct: 229 KL---LDINETNLFGEHNLENIIVV-LNIFDR-FGIDAFKVVNSVKKFKGLKHRCEVVKK 283
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKFGYSGVL------------ 311
G+T+++DSK TN+ AT L + K +ILL GG AK G ++
Sbjct: 284 -TNGITYINDSKGTNVGATIAALNSITNSKNIILLLGGVAKGGDFNLMKKSLDKYVKYIC 342
Query: 312 IW---KTLVNNGLSIPC-FAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
++ K + N + C + + N MKDA + A + A NGD I+LSP CASFDEF + R
Sbjct: 343 VYGQDKEYIENYIKDLCQYQICNDMKDAFDSANQKARNGDTILLSPACASFDEFSGYAER 402
Query: 367 GMVFQEL 373
G VF+ L
Sbjct: 403 GDVFERL 409
>gi|153006720|ref|YP_001381045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
sp. Fw109-5]
gi|152030293|gb|ABS28061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
sp. Fw109-5]
Length = 461
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 178/377 (47%), Gaps = 42/377 (11%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V E++ AA+ + + I+A+TGTNGKST G + F GGNLG PL
Sbjct: 93 AGVPVWGEVELAARFLA-GVPIVAITGTNGKSTTTALAGALFARH-RRTFTGGNLGTPLC 150
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ H + +V V E+SS+QME P V+ +LN+TPDHL+R++ + +YA
Sbjct: 151 Q---HVL----DGGGAEVVVAELSSFQMEG-LLSLRPRVAAILNVTPDHLDRYRDVDDYA 202
Query: 144 LTKCHLF------SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF---PGVKIDTEA 194
K LF H V + A+ H F G PG++ D
Sbjct: 203 AAKARLFGLQQPGDHAVANARDPRALAMAEASRAVL-HTFGFGPPGPGARDPGLEPDEGG 261
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
T + G + +L N + GRHN NA A L L GV + + ++
Sbjct: 262 ATELWVQARGGGPERFRLANRALRGRHNRENAMAAVLCARLL--GVPGGEVQAGLDAFGG 319
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKFGYSGVL- 311
PHR+++V + G+ WV+DSKATN+++T GL + V+++GG+ K L
Sbjct: 320 LPHRLEVVG-ERGGIEWVNDSKATNVDSTLVGLSAFPAGTARVVLVMGGRGKGAPYAPLR 378
Query: 312 -IWKTLVNNGLSI---------------PCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
++ V L+I P A ++ AV A + GDA++LSP CA
Sbjct: 379 PLFAGRVKALLTIGEDAPAVERELGDLCPTEACVTLEAAVRRAAALVRPGDAVLLSPACA 438
Query: 356 SFDEFRNFEHRGMVFQE 372
S+D+FRN+E RG F+
Sbjct: 439 SYDQFRNYEERGEAFRR 455
>gi|340779136|ref|ZP_08699079.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acetobacter
aceti NBRC 14818]
Length = 464
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 183/381 (48%), Gaps = 55/381 (14%)
Query: 24 SGKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+G ++S+ D Q + +S + +TGTNGKST + +L H G+ GGNLG
Sbjct: 100 AGVPILSDADLLFQAVRKSGSKARFAGITGTNGKSTTTALLAHLLRHAGLPVAEGGNLG- 158
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTM 139
P S ++LP P V V+E+SSY +E + +F + +LNLTPDHL+RH M
Sbjct: 159 PAS------LSLPL-LPDNGVYVLEMSSYMLERLATLHF--DTACLLNLTPDHLDRHGDM 209
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
YA K H+F M + L ++ G+ + + ++K + I + +T
Sbjct: 210 AGYAAAKAHIFDRMTGSDLAVIGNGDAWCRDIAASVKARDIPVETISG-------QDDET 262
Query: 197 ASFEVPAVGVVSQ---LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
A F + VVS + + G HN N A AAL+ + L +GV +L S I
Sbjct: 263 ADFHLHEGAVVSHGMVIARPGKTLPGTHNAEN-ACAALA-MALRLGVASSSLASGIGDFA 320
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
HR + V DI GV +VDDSKATN +A L + V + GG AK
Sbjct: 321 GLAHRQKHV-ADINGVAYVDDSKATNADAASRALGCYS--RIVWIAGGVAKAGGIADLVP 377
Query: 305 ----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA--IVLSP 352
G ++ +TL + +P V +++ A+ AR+ A DA ++LSP
Sbjct: 378 YFSRITKTFLIGKDAPILAETLAAH--KVPYEIVGDLEHAIPTARQAAETEDAEVVLLSP 435
Query: 353 GCASFDEFRNFEHRGMVFQEL 373
CASFD+F FE RG+ F EL
Sbjct: 436 ACASFDQFPGFEARGLRFAEL 456
>gi|365873705|ref|ZP_09413238.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermanaerovibrio
velox DSM 12556]
gi|363983792|gb|EHM09999.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermanaerovibrio
velox DSM 12556]
Length = 463
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 190/392 (48%), Gaps = 53/392 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L+ G V+ ELDF A + + ++AVTG+NGK+T +G + LG++ GN
Sbjct: 87 LSLARDKGIPVVGELDFVAPFL--DVPVIAVTGSNGKTTTTGMLGHFFSSLGLKVVTAGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV----SVVLNLTPDHL 133
+GNP++ +P QV V EVSS+Q+ ++C + SVV N+ PDH+
Sbjct: 145 IGNPIA-------LVPVCFSDSQVVVAEVSSFQL-----FWCSSATFVGSVVTNIAPDHI 192
Query: 134 ERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQH-LNEAIKGHR-FNLAWIGAF--PGVK 189
+ H + +NY +K + + ++ + + L + H+ L W A V
Sbjct: 193 DWHGSFENYVASKKRAMERTMLSGFSIIQRSDANILGASGLSHKVLTLTWGHALGEQDVC 252
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG-LDIGVDVEALNST 248
+D +AK A + + + +K++G+HN NAA+A S L V E +N
Sbjct: 253 LDDDAKEARMILDGQ-PIRLFRFEEVKLLGKHNLENAAMALASAAMFLRRPVSGEEVN-- 309
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK 304
I + PPHR ++ + GV +VDDSK TN+ AT T L LK G K +ILLGG+ K
Sbjct: 310 IAGFKAPPHRCELAGV-VNGVIFVDDSKGTNVAATVTALKSLKCPGNGRK-IILLGGRGK 367
Query: 305 --------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 344
+G G+ I L G S + V ++ DAVN A +A
Sbjct: 368 GETYELLARAVLEECYHAVLYGEEGMAIGAALSKAGFSNWVY-VNDLNDAVNKAYELARP 426
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
D ++LSP C S+D++ +++ RG F+ L S
Sbjct: 427 NDMVLLSPACTSWDQYSSYKERGDHFKRLVAS 458
>gi|325299145|ref|YP_004259062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
salanitronis DSM 18170]
gi|324318698|gb|ADY36589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
salanitronis DSM 18170]
Length = 444
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 192/379 (50%), Gaps = 49/379 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LREQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDYK 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I G + A G+ +E
Sbjct: 191 MQNYIDAKFRIIQNQTDNDAFVFWNDDPIIREELHKYGIHGQYYPFAEKRE-DGLAAFSE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS--VLGLDIGVDVEALNSTIEI 251
F P + ++ + + G HN N+ A +S + G+ EAL+
Sbjct: 250 QDKVYFTKP---IEFNMEQEELALTGTHNLFNSMAAGISANIAGIRKSCIREALSD---- 302
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV 310
+ HR++ V R ++GV +++DSKATN+ + L +K K V++LGG+ K Y+ +
Sbjct: 303 FKGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALKSMK-TKTVLILGGKDKGNDYNEI 360
Query: 311 ----------LIWKTLVN-------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
LI+ L N +G +P V +MKDAV+ A RMA NG+ ++LSP
Sbjct: 361 AGLVREKCSGLIFLGLHNEKLHAFFDGFGLPIADVQSMKDAVDAAYRMAKNGETVLLSPC 420
Query: 354 CASFDEFRNFEHRGMVFQE 372
CASFD F+++E RG F+E
Sbjct: 421 CASFDLFKSYEDRGDQFKE 439
>gi|225872736|ref|YP_002754193.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
capsulatum ATCC 51196]
gi|254766033|sp|C1F460.1|MURD_ACIC5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|225794452|gb|ACO34542.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
capsulatum ATCC 51196]
Length = 461
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 184/380 (48%), Gaps = 50/380 (13%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ AA+ + K LA+TG+NGK+T + G +L VGGN+G P+
Sbjct: 92 GLPIIGEVELAARFLKG--KTLAITGSNGKTTTTSLCGAILERAHQHVQVGGNIGLPV-- 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
IAL +V+E+SS+Q+E + F P ++V+LN+TPDHL+RH + +NY
Sbjct: 148 -----IALVDDSRDDGWSVLEISSFQLETTER-FRPGIAVILNITPDHLDRHGSFENYVA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF--PGVKIDTEA 194
K +F+ + +L + + A + W GAF G + A
Sbjct: 202 AKERIFAAQTHDDALILNADDDAASRAAARASSRIFWFSRNRVIRQGAFVHEGNILFRAA 261
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEIL 252
+ A+ E L L + + G HN N AAV A + GV EA+ +
Sbjct: 262 EDAATE-------PILPLSEIPLKGAHNVENVLAAVCAARL----AGVSAEAIRDAVRDF 310
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG------------ 300
R HR++ V +I GV++ +DSKATN++A + G +IL G
Sbjct: 311 RAVEHRLEFVA-EIGGVSFYNDSKATNVDAARKAIEAFPGGIHLILGGKDKNSDYRTLRP 369
Query: 301 ---GQAKFGYS-GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+ K Y+ G K + + ++P A + AVN A A+ GD ++L+P C+S
Sbjct: 370 LMAGRVKAVYTIGSAAEKIMTHLDGAVPLIAAGTLDLAVNLAGGAASPGDVVLLAPACSS 429
Query: 357 FDEFRNFEHRGMVFQELAFS 376
FD+F N+E RG VF++L +
Sbjct: 430 FDQFENYEQRGQVFKDLVLA 449
>gi|146328783|ref|YP_001209872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dichelobacter
nodosus VCS1703A]
gi|146232253|gb|ABQ13231.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
nodosus VCS1703A]
Length = 436
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 193/388 (49%), Gaps = 57/388 (14%)
Query: 17 GLACLLQSGKRV----MSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
G+ C + K + M++++ A++I + + AVTG+NGKSTVVT + +G++
Sbjct: 73 GIDCRRTAFKNIHATLMNDVELFARLIEKPVA--AVTGSNGKSTVVTMLADAARAVGLKT 130
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT----VSVVLNL 128
+ GN+G + A P + V+E+SSYQ+E CP+ V VVLN+
Sbjct: 131 QLCGNIGKSVLTAWLEDEEEPD------LYVLELSSYQLE-----RCPSLMIDVGVVLNV 179
Query: 129 TPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188
TPDHL+R+ + +Y K HL T+L +L +++ + R + F G
Sbjct: 180 TPDHLDRYDSFLDYVAAKSHLAQQ---TQLTILNGDDEYCRQMAPLSRQTV-----FFGA 231
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL--SVLGLDIGVDVEALN 246
+ + + V V++ +L K+ G+HN +NA VA L S LG+DI +EAL
Sbjct: 232 QCVNRVENGAIIVNGQTVLTADEL---KIHGQHNAYNALVALLMASGLGIDISYTLEALK 288
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG---GQA 303
+ R PHRM V V W++DSKATN+ +T L+ +I+ G GQ
Sbjct: 289 N----FRGLPHRMCEVAC-FNDVLWLNDSKATNIASTAAALVGCTRPTWLIVGGVGKGQD 343
Query: 304 KFGYSGVLIWKTL-------VNNGLSIPCFAVANM--------KDAVNHARRMATNGDAI 348
+ VL+ + V+N I F AN+ K AV++A + A GD +
Sbjct: 344 FHQLAAVLLQAPIKHVLMIGVDNHTMIAAFKKANIAFHDCGTIKAAVSYAYQNADAGDQV 403
Query: 349 VLSPGCASFDEFRNFEHRGMVFQELAFS 376
+LSP ASFD+FRN+E RG VF + S
Sbjct: 404 LLSPATASFDQFRNYEERGDVFADEVLS 431
>gi|383785028|ref|YP_005469598.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Leptospirillum
ferrooxidans C2-3]
gi|383083941|dbj|BAM07468.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Leptospirillum ferrooxidans C2-3]
Length = 535
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 135/440 (30%), Positives = 197/440 (44%), Gaps = 90/440 (20%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
K +GLA + + RV+ EL++A+ + P +LAV GTNGKST L G+ F
Sbjct: 102 KWSGLA-VPEYDSRVIGELEWASALSP--FPLLAVGGTNGKSTTSALAAHFLRACGLSVF 158
Query: 74 VGGNLGNPLSEAAF---HCIALPSSKPKFQVAVVEVSSYQMEIPN---KYFCPTVSVVLN 127
+GGN G PLSEA IA S P++ VVE+SS+Q E + +F P V + LN
Sbjct: 159 LGGNFGTPLSEAVLSERKRIAQELS-PEYDAGVVEISSFQAETMSPVRSWFDPVVHLFLN 217
Query: 128 LTPDHLERHKTMKNYALTKCHLF-----SHMV----NTKLGLLPFGNQHLNEAI-----K 173
+TPDHL+RH + + Y K F SH + + GL P A K
Sbjct: 218 ITPDHLDRHPSEEAYRRAKWQSFRGISPSHFTVFNGDPESGLYPLRKTPGRPAFFFASRK 277
Query: 174 GHRFNL----------------AWIGAFPGVKIDTEA-KTASFEVPAVGVVSQLQLHNMK 216
G L + FPG K +TE + F +P +G L
Sbjct: 278 GASPELPVEEAPVFLLSEDGKTGRVSGFPGQKGETEIWQLDGFSLPGLGNRQNLA---AS 334
Query: 217 VMGRHNYHNAAVAALSVLGLDIG----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
++G + N V G D G + L ++ R PHRM+++ + G+ ++
Sbjct: 335 LLGTLIFLNEQRKIGKVRGQDSGDMPFPEKTLLLESLSGFRGLPHRMEVIA-EKNGICFI 393
Query: 273 DDSKATNLEATCTGLMDLKG---------------HKCVILLGGQAK------------- 304
+DSKATN++AT LM LKG ++++GG+ K
Sbjct: 394 NDSKATNVDAT---LMALKGFSVKSGNKGGDDADARSLILIMGGRDKGASYFPLASPVKD 450
Query: 305 -------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
G S +I K+L + +IP V++MK AV+ A GD ++LSPGC+S+
Sbjct: 451 LVRVLIVLGESREVIAKSLSSFCETIP---VSSMKMAVDVALSKGREGDTVLLSPGCSSY 507
Query: 358 DEFRNFEHRGMVFQELAFSA 377
D F +E RG F L A
Sbjct: 508 DMFHGYEERGNAFAMLVREA 527
>gi|451949061|ref|YP_007469656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfocapsa
sulfexigens DSM 10523]
gi|451908409|gb|AGF80003.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfocapsa
sulfexigens DSM 10523]
Length = 461
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 175/374 (46%), Gaps = 55/374 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++ EL AA I + +AVTGTNGK+TV +G++L G + FVGGN+G P+
Sbjct: 101 ILGELALAAPYITECV--VAVTGTNGKTTVTALIGELLRASGKKVFVGGNIGTPVLNYLL 158
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ V+E+SS+Q+E FCP + V+LN+TPDHL+RH +M NYA K
Sbjct: 159 -------GDERADYLVLELSSFQLESAGS-FCPHIGVLLNITPDHLDRHGSMVNYAAAKM 210
Query: 148 HLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRF--------NLAWIGAFPGVKIDTEAKT 196
+F H +L + H+ E + G N A G V I +T
Sbjct: 211 KMFVHQKADDKAILCSDDPMCLHVRELLNGQEVYCFGNPASNCAATGNDRKVCITLPDRT 270
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
S+E+ + S + N AA+ A+S+L G + + + ++
Sbjct: 271 DSYELAGTKLDSHTGMLN---------SCAAILAVSLL----GCEKNDIANGLKYFAPAD 317
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWK-- 314
HR+Q V R +GV + +DSKATN A + L K VIL+ G G ++ +
Sbjct: 318 HRLQHV-RLRKGVDYYNDSKATNTGAVISALCSFS--KGVILIAGGRDKGEDYTVLKEFV 374
Query: 315 -------TLVNNGL---------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
L+ ++P +M+DAV+ A A G+ ++L+P C+SFD
Sbjct: 375 LEKVEKLILIGEAAGAIADAMEGTVPVLRADSMEDAVSLAADSAQPGEIVLLAPACSSFD 434
Query: 359 EFRNFEHRGMVFQE 372
F N+ HRG VF +
Sbjct: 435 MFDNYGHRGEVFMQ 448
>gi|254877481|ref|ZP_05250191.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254843502|gb|EET21916.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 414
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 179/367 (48%), Gaps = 55/367 (14%)
Query: 26 KRVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++++S++D Q I + K++AVTG+NGKST+VT + +L +LG ++ + GN+G P
Sbjct: 79 QKIVSDIDLFYQSIRNTKAKMIAVTGSNGKSTIVTMLDFVLRNLGYKSILVGNIGTP--- 135
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L KF VVEVSS+Q+++ N + V+N++PDHL+R+K + Y
Sbjct: 136 ------PLNKIGEKFDYCVVEVSSFQIDLFNSVEFD-LGCVVNVSPDHLDRYKNYEEYK- 187
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+KL L F + H + + G + V+ T
Sbjct: 188 ----------QSKLNLAKFSKDFFVYDV--HNTGIKYAGEYQIVRGSIYKDTTKL----- 230
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
L + + G HN N V L++ G+D+ + I+ + HR +IV +
Sbjct: 231 -----LDITETNLFGEHNLENIIVV-LNIFDR-FGIDISKAVAAIKKFKGLKHRCEIV-K 282
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKFG------------YSGVL 311
+I GVT+++DSK TN+ AT L + K +ILL GG AK G V
Sbjct: 283 NIAGVTYINDSKGTNVGATIAALNSITSSKNIILLLGGVAKGGDFSLMSKSLAKYVKYVY 342
Query: 312 IW---KTLVNNGLSIPC-FAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
++ K + N + C + + N MKDA A + A + + ++LSP CASFDEF + R
Sbjct: 343 LYGQDKEYIENYIKDLCQYQICNDMKDAFRLASQKAQDSEIVLLSPACASFDEFSGYAER 402
Query: 367 GMVFQEL 373
G VF++L
Sbjct: 403 GEVFEKL 409
>gi|372268257|ref|ZP_09504305.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Alteromonas
sp. S89]
Length = 466
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/358 (31%), Positives = 170/358 (47%), Gaps = 52/358 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALPSSKPKFQVA 102
KI+A+TG+NGKSTV T +G+M++ G VGGN+G P+ + C LP V
Sbjct: 115 KIIAITGSNGKSTVTTLMGEMVSAAGFSVEVGGNIGVPVLDMLAQCGTNLPD------VF 168
Query: 103 VVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKL 158
V+E+SS+Q+E P V+ +LN++ DH++R+ M Y K ++ H ++N
Sbjct: 169 VLELSSFQLET-TYSLAPDVATILNMSADHMDRYPNMAAYHQAKQRVYRHAQQLVINRAD 227
Query: 159 GLL--PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
L P G + + R +L G + + + A G L+ M
Sbjct: 228 PLTRGPLGKDRVEWSFGLDRPDLRQFGVI---------RDGADQWLAQGTEKLLRTDAMA 278
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
++G HN NA A G +G+++ A+ + HR + V DI GV +V+DSK
Sbjct: 279 MVGSHNIANALAALAL--GYAVGMEMPAMLQVLRQFTGLTHRCERVG-DIDGVVFVNDSK 335
Query: 277 ATNLEAT---CTGLMDLKGHKCVILLGGQAK-------------------FGYSGVLIWK 314
TN+ AT GL D + K V++ GG K G G I
Sbjct: 336 GTNVGATRAALDGLADDE-RKIVLIAGGDGKGADFSPLGEAAGALRGLVTIGVDGPKIAS 394
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+ +P ++M DAV AR MA +GD ++LSP CASFD +RNFE RG F+
Sbjct: 395 VFADR---VPQVTASDMTDAVAKARAMAHSGDFVLLSPACASFDMYRNFEARGEDFRR 449
>gi|291288105|ref|YP_003504921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Denitrovibrio
acetiphilus DSM 12809]
gi|290885265|gb|ADD68965.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Denitrovibrio
acetiphilus DSM 12809]
Length = 416
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 174/372 (46%), Gaps = 57/372 (15%)
Query: 30 SELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC 89
SE++ A P ++AVTGTNGKSTV T + Q+L G+EA GN+G P +EA
Sbjct: 70 SEIELADAKRPTDTVVVAVTGTNGKSTVTTLIAQILKKCGLEAVACGNIGLPYAEAV--- 126
Query: 90 IALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHL 149
+ + VVE+SS+Q + ++F VV NL DH++R++ M +YA
Sbjct: 127 -----TGGAYGAYVVELSSFQTGML-QHFSADCVVVTNLAEDHMDRYRDMDDYA------ 174
Query: 150 FSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG--VKIDTEAKTASFEVPAVGVV 207
+ K+ LL F I+ + + + G V++ E +
Sbjct: 175 -----DDKMNLLRFLKPEGRLIIENDEYLVQKSSVYKGDTVRVLPEVNNGRLDFGHFYCT 229
Query: 208 SQLQLHNMKVMGRHNYHN---AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ + G HN N A +AA S+ GL+ DV L + L HR +
Sbjct: 230 TD----KFPLKGEHNLLNLSFALLAADSIAGLE--GDVTYLTENLIGLE---HRCEFA-A 279
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------------- 304
+I GV +++DSK TN+ +T T L L VI+LGG+ K
Sbjct: 280 EINGVEYINDSKGTNIHSTLTALKGLP-EGIVIILGGKDKNGNFAALKDVINEKCAGVIT 338
Query: 305 FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
+G +G I+ TL + +S+P + ++ AV +A G +VLSP CASFDE R FE
Sbjct: 339 YGQAGEKIYSTL-KDIISVPLYKAEGLESAVRKGAEVAEAGQKVVLSPACASFDEHRGFE 397
Query: 365 HRGMVFQELAFS 376
HRG F+EL S
Sbjct: 398 HRGAHFKELVQS 409
>gi|388457443|ref|ZP_10139738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Fluoribacter
dumoffii Tex-KL]
Length = 443
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 177/365 (48%), Gaps = 68/365 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TGTNGKSTV T VG+M G + V GN+G P+ + + ++ + V+
Sbjct: 107 VIAITGTNGKSTVTTLVGEMAKAAGFKVAVAGNIGTPVLDMLY-------DGHQYDLWVL 159
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+++ P + +LN++PDHL+RH TM+ Y K ++ H L
Sbjct: 160 ELSSFQLDL-TYSLAPIAATILNVSPDHLDRHHTMEAYIQAKQRIY-HQAQVAL------ 211
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV---GVVSQ------------ 209
FN P ++D+ + A +VPA G+++Q
Sbjct: 212 ------------FNREDADTIPTTEVDSISFGA--DVPAGNNWGLITQEDKIYLAKGDAC 257
Query: 210 -LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268
L + ++ + G HN+ NA A S L G+ + + + + PHR Q V R + G
Sbjct: 258 ILPVDSVLIKGVHNWLNALAA--SALVDAAGISHQHIKNVLTSFTGLPHRCQWV-RTLDG 314
Query: 269 VTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQ-------------AKFGYSGVLI 312
V W++DSK TN+ AT + + + G K V++ GGQ A++ S +LI
Sbjct: 315 VDWINDSKGTNIGATISAINGIGGSMQGKIVLIAGGQGKGADFSELSQPIAEYVRSIILI 374
Query: 313 WKTL--VNNGLS--IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
+ + LS +P +++ AV+ A+ A GD ++LSP CAS D FR+F HRG
Sbjct: 375 GEDADKIETALSNVVPITRASSLDSAVSIAKSQAKPGDVVLLSPACASLDMFRDFNHRGE 434
Query: 369 VFQEL 373
F L
Sbjct: 435 SFASL 439
>gi|387824847|ref|YP_005824318.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
novicida 3523]
gi|332184313|gb|AEE26567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
novicida 3523]
Length = 417
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 178/370 (48%), Gaps = 63/370 (17%)
Query: 27 RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+++S++D Q I + K +AVTG+NGKSTVVT +L LG ++ + GN+G P
Sbjct: 80 KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
AL KF +VEVSS+Q+++ N C + V+N++PDHL+R++ + Y
Sbjct: 136 -----ALNKIGEKFDYCIVEVSSFQIDLFN---CVRFDLGCVINVSPDHLDRYQNFEEYK 187
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+KL L F N + H + + G + + + A +
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQII------RGAIYR--- 225
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G + L + + G HN N V L LGLDI +A++S I+ + HR +I
Sbjct: 226 -GSIKLLDITETNLYGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAKFGYSGVLIW------- 313
V + + G+T+++DSK TN+ AT L + K +I LLGG AK G ++I
Sbjct: 281 VKK-VNGITYINDSKGTNVGATIAALNSITNSKNIILLLGGVAKGGDFSLMIKSLDKYVK 339
Query: 314 --------KTLVNNGLSIPCFA--VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
K + + + C NMK A A + A + I+LSP CASFDEF +
Sbjct: 340 YVYLYGADKEYIESYIKSYCKYQLCNNMKQAFELASQKAEANEIILLSPACASFDEFTGY 399
Query: 364 EHRGMVFQEL 373
RG VFQ L
Sbjct: 400 VQRGEVFQSL 409
>gi|289423178|ref|ZP_06424993.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus anaerobius 653-L]
gi|289156509|gb|EFD05159.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus anaerobius 653-L]
Length = 457
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 195/374 (52%), Gaps = 42/374 (11%)
Query: 26 KRVMSELDFAAQV-IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
K+V+SE++ A Q + ++I+ + +TGTNGK+T + VG++ G+E +V GN+GNP
Sbjct: 94 KKVISEIELAYQAGLKKNIRFVGITGTNGKTTTTSLVGEIFKAQGVETYVVGNIGNP--- 150
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A + + V V E+SS+Q+E + F PT S VLNLT DHL RH TM+NYA
Sbjct: 151 -AIEAVEMAGDGA---VLVTELSSFQLESID-MFSPTASTVLNLTEDHLNRHHTMENYAK 205
Query: 145 TKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFP-GVKIDTEAK-TASF 199
K +F + V+ + +L + + + + E + F G+ +D + +
Sbjct: 206 AKARIFENQVDDTVCILNYDDPITRSMAEDCHADVVFFSRKDKFERGIYLDDDNNIIVNN 265
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E+ + + L+ + + G HN N +AA+ L L +GV++E L ++ + HR+
Sbjct: 266 EIEEIAL---LKADELSLPGGHNLEN-CMAAIG-LTLALGVEIEVLVKVLKTFKAVEHRL 320
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------------- 304
+ V ++GV +V+DSK TN ++T + K +++ GG K
Sbjct: 321 EYVDT-VKGVKYVNDSKGTNPDSTIKAVQSYK-DPIILIAGGYDKGSDFNELFEIAKDYV 378
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G +G LI +T +G + + V ++K+AV + ++A D ++LSP CAS+
Sbjct: 379 RSVVILGQTGDLIEETARKHGFT-DLYRVNDLKEAVEKSAQIAKEKDIVLLSPACASWGM 437
Query: 360 FRNFEHRGMVFQEL 373
+ N+E RG F++L
Sbjct: 438 YNNYEERGREFKKL 451
>gi|317050622|ref|YP_004111738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
indicum S5]
gi|316945706|gb|ADU65182.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
indicum S5]
Length = 439
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 118/359 (32%), Positives = 173/359 (48%), Gaps = 56/359 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP-LSEAAFHCIALPSSKPKFQVAV 103
I+AVTGTNGKSTV + +L GI A GN+G P L A C QV V
Sbjct: 101 IIAVTGTNGKSTVTALIAHILQQSGISAVAAGNIGLPALDTLALGC----------QVTV 150
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+E + F P ++V+LN+T DHL R+ T ++Y K +F + +L
Sbjct: 151 LELSSFQLETI-QTFRPDIAVLLNVTEDHLNRYDTFEHYVDAKERIFLNQTAEDWCVL-- 207
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF-------EVPAV-----GVVSQLQ 211
H + I+ L P ++ +++ V V G + +
Sbjct: 208 --NHDDPVIR----TLTSDNHIPARRVFFSSRSRQMVDNFLNCTVQGVRGKVNGQLLEAP 261
Query: 212 LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
+ + G HN N A A +V G+ E + + +E PHRM +V R+I GV +
Sbjct: 262 ADRLCLEGLHNMENVAAALAAVRLY--GLSPEQIGTGLEGFAPLPHRMTLV-REIVGVRY 318
Query: 272 VDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKFGYSGVLIWKTLVNN----------- 319
+DDSKATN+ A L L+G K +IL+ GG+ K G L +
Sbjct: 319 IDDSKATNIGAV---LKSLEGQKNIILIAGGRNKGGDFAQLAGAVKASCKLILAIGEARH 375
Query: 320 ------GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
G S+ +M DAV+ A + A +GD ++LSPGCASFD F +FEHRG VF++
Sbjct: 376 QIAGALGKSVSVLLADDMADAVSQAWKQAVSGDTVLLSPGCASFDMFTSFEHRGAVFEQ 434
>gi|224024607|ref|ZP_03642973.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
18228]
gi|224017829|gb|EEF75841.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
18228]
Length = 444
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 191/378 (50%), Gaps = 47/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKEQGTPIISEIEFAGRYT--QAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH-KT 138
L A +K + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SL--------AFQVAKCNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYGYQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I GH + A G+ E
Sbjct: 191 MQNYVDAKFRIIQNQTDADAFIFWNDDPVIQRELHKYGIHGHYYPFAEKRE-EGLAAFVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEIL 252
F P + ++ + + G HN N+ A +S +I G+ E + +
Sbjct: 250 ENKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA---NIAGIRKECIREALNDF 303
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV- 310
+ HR++ V R ++GV +++DSKATN+ + L +K K V++LGG+ K Y+ +
Sbjct: 304 KGVEHRLEKVCR-VRGVEYINDSKATNVNSCWYALQSMKT-KTVLILGGKDKGNDYNEIA 361
Query: 311 ---------LIWKTLVN-------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
LI+ L N +G +P V +MKDAV+ A +MA G+ ++LSP C
Sbjct: 362 DLVREKCSGLIFMGLHNEKLHDFFDGFGLPIVDVQSMKDAVDAAYQMAKKGETVLLSPCC 421
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F+++E RG F++
Sbjct: 422 ASFDLFKSYEDRGDQFKK 439
>gi|118602749|ref|YP_903964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567688|gb|ABL02493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 433
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 184/351 (52%), Gaps = 41/351 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGKSTV + QM+ + G++ +GGN+G P+ C+ K + V+
Sbjct: 103 IIGITGSNGKSTVTQLLTQMIINAGMQVAMGGNIGTPV----LDCL-----NEKIEYYVL 153
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SSYQ++ + + V VVLN+TPDHL+R++ K+Y +K L+ H + +
Sbjct: 154 ELSSYQLDYSH-HLNLIVGVVLNITPDHLDRYQNFKHYINSKLSLYQHCQHLVI------ 206
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV--GVVSQLQLHNMKVMGRHN 222
+L+E + + N G + D + + G + ++ ++++G HN
Sbjct: 207 --NLDEPLTPPKVNAKCFGISIPKQADDFGTVTCHDTYYLLKGDNVLMSINEVQLIGEHN 264
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +AAL+ LG I + + ++ +I+ + HR++ V + Q + + +DSKATN +
Sbjct: 265 TRNI-LAALA-LGDQIRLPIISMIQSIKNFKGLEHRLEWVAKK-QNIDYYNDSKATNAIS 321
Query: 283 TCTGLMDL--KGHKCVILLGGQAK-FGYSGV--LIWKTLVNN---GLSIPCFA------- 327
T T + L K V++LGG AK Y+ + LI K++ + G S F
Sbjct: 322 TITAIQALMRKHQNIVLILGGIAKQENYTPLFKLINKSITSVILIGQSAQQFEQEINTNT 381
Query: 328 --VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
MKDAVN A M NG I+LSPGCASFD F +FEHRG F+E FS
Sbjct: 382 SHAKTMKDAVNVAHSMINNG-TILLSPGCASFDMFDDFEHRGRAFKECVFS 431
>gi|328955355|ref|YP_004372688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coriobacterium
glomerans PW2]
gi|328455679|gb|AEB06873.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
glomerans PW2]
Length = 470
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 178/371 (47%), Gaps = 40/371 (10%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+M E +FA ++ P + +AVTGTNGK+T V+ GQ+L+ I V GN+G E A
Sbjct: 97 IMGEPEFAWRLSPE--RWIAVTGTNGKTTTVSLTGQLLSAARIPCEVVGNIG----ETAI 150
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ F V E+SSYQ+ ++ F P +V+LN+TPDHL H+ +NYA K
Sbjct: 151 SQVDRRQDGDWF---VAELSSYQLATTSE-FHPRAAVLLNITPDHLRWHRGFENYARAKL 206
Query: 148 HLFSHMVNTKLGLLPFGNQHL----NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+ ++ L ++ + L ++ I HR L P + V
Sbjct: 207 KILQNLDENDLAIIDVDDPGLRRLGSQVIASHRRILRLAHDDPASVDAAFVRAGRLVVRL 266
Query: 204 VGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
G+ L ++ + V G HN NA A+ S L G A++ + + HRM+
Sbjct: 267 DGIEHDLARVSELAVAGAHNVSNALAASASALLA--GASDAAVSEGLRAFSSLEHRMEPA 324
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----FGYSGVLIWK---- 314
DI GV + +DSKATN +A L G + ++LLGG K G++ ++ +
Sbjct: 325 G-DIDGVRFYNDSKATNTDAVEKALTAFPGDRVILLLGGYDKGTPLHGFATRVVQQIGAV 383
Query: 315 --------------TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
T +GL + ++ DAV+ AR +A GD I+LSP C+SFDEF
Sbjct: 384 VCFGQARRRFMDAMTGAASGLDVDVAEADDLLDAVDVARSLACRGDVILLSPACSSFDEF 443
Query: 361 RNFEHRGMVFQ 371
++FE RG F+
Sbjct: 444 QDFEERGRRFK 454
>gi|254372509|ref|ZP_04987998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
tularensis subsp. novicida GA99-3549]
gi|151570236|gb|EDN35890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
novicida GA99-3549]
Length = 417
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 176/370 (47%), Gaps = 63/370 (17%)
Query: 27 RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+++S++D Q I + K +AVTG+NGKSTVVT +L LG ++ + GN+G P
Sbjct: 80 KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
AL KF VVEVSS+Q+++ N C + ++N++PDHL+R++ + Y
Sbjct: 136 -----ALNKIGEKFDYCVVEVSSFQIDLFN---CVRFDLGCIINVSPDHLDRYQNFEQYK 187
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+KL L F N + H + + G + ++ +
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQIIRGAIYRNSTKL---- 230
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
L + K+ G HN N V L LGLDI +A++S I+ + HR +I
Sbjct: 231 ------LDIAETKLFGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAKFGYSGVLIW------- 313
V + + G T+++DSK TN+ AT L + K +I LLGG AK G ++I
Sbjct: 281 VKK-VNGTTYINDSKGTNVGATIAALNSITNSKNIILLLGGVAKGGDFSLMIKSLDKYVK 339
Query: 314 --------KTLVNNGLSIPCFA--VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
K + + + C NMK A A + A + + ++LSP CASFDEF +
Sbjct: 340 YVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEIVLLSPACASFDEFSGY 399
Query: 364 EHRGMVFQEL 373
RG VFQ L
Sbjct: 400 AQRGEVFQNL 409
>gi|118497141|ref|YP_898191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
novicida U112]
gi|194323439|ref|ZP_03057216.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
novicida FTE]
gi|254373970|ref|ZP_04989452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
novicida GA99-3548]
gi|385792464|ref|YP_005825440.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|158512419|sp|A0Q5C2.1|MURD_FRATN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|118423047|gb|ABK89437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
novicida U112]
gi|151571690|gb|EDN37344.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
novicida GA99-3548]
gi|194322294|gb|EDX19775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
tularensis subsp. novicida FTE]
gi|328676610|gb|AEB27480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
novicida Fx1]
Length = 417
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 176/370 (47%), Gaps = 63/370 (17%)
Query: 27 RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+++S++D Q I + K +AVTG+NGKSTVVT +L LG ++ + GN+G P
Sbjct: 80 KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
AL KF VVEVSS+Q+++ N C + ++N++PDHL+R++ + Y
Sbjct: 136 -----ALNKIGEKFDYCVVEVSSFQIDLFN---CVRFDLGCIINVSPDHLDRYQNFEQYK 187
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+KL L F N + H + + G + ++ +
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQIIRGAIYRNSTKL---- 230
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
L + K+ G HN N V L LGLDI +A++S I+ + HR +I
Sbjct: 231 ------LDIAETKLFGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAKFGYSGVLIW------- 313
V + + G T+++DSK TN+ AT L + K +I LLGG AK G ++I
Sbjct: 281 VKK-VNGTTYINDSKGTNVGATIAALNSITNSKNIILLLGGVAKGGDFSLMIKSLDKYVK 339
Query: 314 --------KTLVNNGLSIPCFA--VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
K + + + C NMK A A + A + + ++LSP CASFDEF +
Sbjct: 340 YVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEIVLLSPACASFDEFSGY 399
Query: 364 EHRGMVFQEL 373
RG VFQ L
Sbjct: 400 AQRGEVFQNL 409
>gi|365174756|ref|ZP_09362195.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Synergistes sp.
3_1_syn1]
gi|363614168|gb|EHL65666.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Synergistes sp.
3_1_syn1]
Length = 460
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 125/392 (31%), Positives = 186/392 (47%), Gaps = 61/392 (15%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA L G V ELDF + + S ++ VTG+NGK+T + +G L LG
Sbjct: 83 KAPILEAAAAKGITVTGELDFVSPYL--SGIVIGVTGSNGKTTTTSMIGYYLERLGYSVM 140
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
GGN+GN ++ AA ++ V+E+SS+Q+ K+ C ++VV NL PDH+
Sbjct: 141 TGGNIGNAVARAA---------GKEYDFIVLELSSFQLCWAKKFIC-DLAVVTNLAPDHI 190
Query: 134 ERHKTMKNYALTKCHLFSHMVNTKLGLLPFG--------NQHLNEAIKGH--RFNLAWIG 183
+ H + +NY K +L VN L P G + LN A + R+ L W
Sbjct: 191 DWHGSYENYVAAKANL----VNC---LAPGGAVIYQERDEEALNIAAREEIVRYPLRWGE 243
Query: 184 AFP---GVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIG 239
P G+ +D + + + +L ++K++GRHN N A+ AL VL L
Sbjct: 244 DDPHKRGLYLDDGVRASWINGGGCRMKRRLFFFDDVKLLGRHNLENTAM-ALGVLAL--- 299
Query: 240 VDVEALNSTIEILRTPP-HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
++ L+ + PP HR + +GVT+VDDSK TN+ AT T + L G K VI+
Sbjct: 300 FNMPELSPELIASYVPPKHRCAFAGK-TRGVTFVDDSKGTNVAATVTAMTSLPGAK-VII 357
Query: 299 LGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHA 338
LGGQ K G I L G+S C V +M++AV A
Sbjct: 358 LGGQGKGEDYAPLAEAVRENTRAAVLLGSEKEKIAAALSAAGVS-GCRLVNDMEEAVKTA 416
Query: 339 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+A+ GD ++LSP C S+D + ++ RG F
Sbjct: 417 YSLASEGDTVLLSPACTSWDMYPSYNVRGDHF 448
>gi|344923347|ref|ZP_08776808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
Odyssella thessalonicensis L13]
Length = 448
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 186/385 (48%), Gaps = 63/385 (16%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++M ++D Q P + KI+ VTGTNGKST T +G +L + + VGGN+G P+
Sbjct: 81 GIKIMGDVDLFRQNYP-TAKIIGVTGTNGKSTTTTLIGHILKNCNVPIAVGGNVGIPV-- 137
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVV--LNLTPDHLERHKTMKNY 142
++LP P V V+E+SSYQ+E+ C +++V N+TPDHLERHKTM++Y
Sbjct: 138 -----MSLP-KLPDNGVYVIELSSYQLELST---CLGLTIVAWTNITPDHLERHKTMRDY 188
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--- 199
K +F+ ++ + + + +R N A G F V + + F
Sbjct: 189 VYAKSQIFASPTVPPQSIICVDDSYSKDLY--NRMNAAHPGYFTPVSVVNPLRRGVFVYD 246
Query: 200 ---------EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
E +G ++QL+ + G HNY N A+A + +G++ + + + I+
Sbjct: 247 GMLIDALAEERINLGEITQLKY----LKGPHNYQNIAIA--YGVSRKLGLNSDEIMAAIQ 300
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAK----- 304
HR + V GV +++DSKATN EA LK ++ + +LGG AK
Sbjct: 301 TFPGLAHRQEYVETR-NGVIFINDSKATNAEAASHA---LKAYENIYWILGGVAKSDGID 356
Query: 305 --------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHA-RRMATNGDAIV 349
G + +TL IP ++ AV A A G+ +V
Sbjct: 357 ELLPLLERVKKAYLIGEASNRFAQTLAGK---IPYRLCLELEKAVREAYTDAAAEGNGVV 413
Query: 350 -LSPGCASFDEFRNFEHRGMVFQEL 373
LSP CASFD+F++FE RG F+E+
Sbjct: 414 LLSPACASFDQFKDFECRGNAFKEI 438
>gi|20808074|ref|NP_623245.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Thermoanaerobacter tengcongensis MB4]
gi|254479543|ref|ZP_05092860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
pacificum DSM 12653]
gi|30316069|sp|Q8R9G4.1|MURD_THETN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|20516656|gb|AAM24849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
tengcongensis MB4]
gi|214034511|gb|EEB75268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
pacificum DSM 12653]
Length = 450
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 193/385 (50%), Gaps = 70/385 (18%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ A ++ I A+TGTNGK+T + +G+M + G + +V GN+G PL
Sbjct: 92 GLEILGEVELAYRL--SKAPIYAITGTNGKTTTTSLLGEMFRNAGRKVYVAGNIGYPLIY 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA A P+ V E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NYA
Sbjct: 150 AALE--AGPNDH-----IVAEISSFQLETV-KEFRPKISCIINITPDHLDRHKTFENYAN 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + + + W G+K +AK F V
Sbjct: 202 IKGRIFENQREEEYVVLNYDDP------------VTW-----GLKERAKAKVFPFSRKKV 244
Query: 205 ----GVVSQ--LQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
V + L L N KV+ G HN NA +AA SV L G++V+A+ +T+
Sbjct: 245 LENGAYVKEGFLYLQNKKVIKVEDIYIPGEHNLENA-LAASSVAYLS-GIEVDAIETTLR 302
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------ 304
+ HR++ V +I+G+ + +DSK TN +A+ + LK V++ GG K
Sbjct: 303 TFKGVEHRIEFVA-EIEGIKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDKGSEFDE 360
Query: 305 --------------FGYSGVLIWKTLVNNGLSIP---CFAVANMKDAVNHARRMATNGDA 347
G + I KT + S P F V ++++AV A +A GD+
Sbjct: 361 FVKTFDKKVRKLILIGQTAQKIKKTALK--YSYPEEDIFLVDSLEEAVRKAYEVAEKGDS 418
Query: 348 IVLSPGCASFDEFRNFEHRGMVFQE 372
++LSP CAS+D F+NFE RG F++
Sbjct: 419 VLLSPACASWDMFKNFEERGKAFKK 443
>gi|198274310|ref|ZP_03206842.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
gi|198272800|gb|EDY97069.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
plebeius DSM 17135]
Length = 443
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 187/378 (49%), Gaps = 47/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKNQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIGQ 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYGFE 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I G F A GV TE
Sbjct: 190 MQNYVDAKFRIIQNQTDDDAFIFWNDDPIIQKELHKYGIHGQYFPFAEKNE-EGVAAFTE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEIL 252
F P + ++ + + G HN N+ A +S +I G+ E + +
Sbjct: 249 ENKVYFTRP---IAFNMEQEELALTGTHNLFNSMAAGISA---NIAGIRKECIREALNDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV- 310
+ HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K Y+ +
Sbjct: 303 KGVEHRLEKVAR-VKGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDKGNDYNEIA 360
Query: 311 ---------LIWKTLVNNGL-------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
LI+ L N L +P V +M DAVN A MA G+ ++LSP C
Sbjct: 361 DLVKEKCSGLIFLGLHNEKLHDFFDNFGLPIVDVQSMPDAVNAAYNMAKKGETVLLSPCC 420
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F+++E RG F+E
Sbjct: 421 ASFDLFKSYEDRGDQFKE 438
>gi|301063235|ref|ZP_07203784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
proteobacterium NaphS2]
gi|300442663|gb|EFK06879.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
proteobacterium NaphS2]
Length = 467
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 175/369 (47%), Gaps = 42/369 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++ E++ AA+ + + I+A TGTNGK+TV +F+G+ML G+ FVGGN+G PL+
Sbjct: 106 IIGEMELAARHV--DVPIIAATGTNGKTTVTSFLGRMLEDQGLAVFVGGNIGTPLT---- 159
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
A + K VVE+SS+Q++ + F P +S++LN++PDHL+R+ Y +K
Sbjct: 160 ---AYLMGEMKADYLVVEISSFQLDTIER-FTPEISIILNISPDHLDRYADYSAYIHSKL 215
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F + + +L + L + ++ G G ID + + AV
Sbjct: 216 RIFENQGAGQTVILNDDDIVLKKTTPPEGTSVLRYGLKKGAGIDAFIENEGI-LSAVTEK 274
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
+ L + G HN N + A+ + G +G+ E + TI + +R++ V +
Sbjct: 275 GRFNLSAFSLPGAHNLEN--LLAVVLAGQALGLAPEPIQKTINAFKGLSNRLERVCANGH 332
Query: 268 G-----VTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------------ 304
G V + +DSKATN++A + +++ GG+ K
Sbjct: 333 GFLQKKVQFYNDSKATNVDAAVRAVQSFD-KPLILIAGGRHKGSNYQPLVNACKGHVKGA 391
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
G S L+ + P M DAV A MA +GD ++L+P C+SFD F N
Sbjct: 392 VFMGESASLLAEAFTG---ETPFSLAETMPDAVKKAAHMAESGDVVLLAPACSSFDMFEN 448
Query: 363 FEHRGMVFQ 371
++ RG F+
Sbjct: 449 YDQRGRAFK 457
>gi|410637810|ref|ZP_11348380.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
lipolytica E3]
gi|410142496|dbj|GAC15585.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
lipolytica E3]
Length = 434
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 179/373 (47%), Gaps = 52/373 (13%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+++G V+ +++ A+ I ++A+TG+NGKSTV V +MLN G +A +GGN+G P
Sbjct: 83 IEAGVEVIGDVELFARF--NQIPVIAITGSNGKSTVTCLVNEMLNCAGFKAQMGGNIGTP 140
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ L K + V+E+SS+Q+E + P + +LN++ DHL+RH+T
Sbjct: 141 V---------LDLLKSDAEYLVLELSSFQLERL-QSLTPVCATILNVSEDHLDRHRTFSA 190
Query: 142 YALTKCHLF---SHMVNTKLGLLPFGNQHLNE---AIKGHRFNLAWIGAFPGVKIDTEAK 195
YA K ++ + + + + + +++ + + ++W A + +D EA
Sbjct: 191 YADAKKRIYHNAKYAIANRDDVKTWPHEYQPQYSFGLSNSPLGISWNDASREILVDGEAY 250
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ H + G HN N A V L GV EA+ + +
Sbjct: 251 VSE--------------HQCALKGLHNVLNIQAAIGCVRPL--GVGAEAITQAVGQFKGL 294
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAKFG------ 306
HR +++ Q V W++DSKATN+ AT L LK K V++ GG K
Sbjct: 295 AHRFELISEHNQ-VRWINDSKATNVGATIAALQSLKNRDSGKLVLIAGGDGKNADFTELQ 353
Query: 307 ---YSGVLIWKTLVNNGLSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+ V + TL +G I V ++ +AVN A + +GD ++LSP CAS D
Sbjct: 354 PVLLNDVDLLITLGKDGREIASLKPGSIEVKDLNEAVNFANSIVESGDIVLLSPACASLD 413
Query: 359 EFRNFEHRGMVFQ 371
F N++HRG VF+
Sbjct: 414 MFDNYQHRGDVFR 426
>gi|123966762|ref|YP_001011843.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9515]
gi|158512733|sp|A2BY75.1|MURD_PROM5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|123201128|gb|ABM72736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9515]
Length = 477
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 181/385 (47%), Gaps = 54/385 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+ E++ A + + ++I + +TGTNGK+TV + +L + A GN+G
Sbjct: 99 LKEKGIEVLGEVNIAWESL-KNINWIGITGTNGKTTVTHLLSHILRTNNLLAPFAGNIGT 157
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PL + A+ ++ S + VA E+SSYQ+EI P + + T DHL+RHKT+
Sbjct: 158 PLCKIAY---SIKSKNIDWLVA--ELSSYQIEIATLCIKPKIGIWTTFTADHLDRHKTLD 212
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
NY K L ++ + + + HL E K G+ I T +K + +
Sbjct: 213 NYFKIKNSLLKQ---SEFRIYNYDDIHLRENFKSLS---------KGIWITTSSKQSDLD 260
Query: 201 VPAVGVVSQ----------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
+ ++ L L N K+ G HN N +A + IG+ E + + +
Sbjct: 261 HCDYWINNEDFIVERQENLLSLKNFKLKGNHNTQNLLLAIAA--ARKIGLSPEKIKNALL 318
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------ 304
PHRM+ +++ + ++DSKATN +++ G+ +KG +I+ GG+ K
Sbjct: 319 SYEQLPHRMETIYQS-NKLEIINDSKATNFDSSTAGIKAIKGAP-IIISGGKLKSGSYIE 376
Query: 305 --------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG--DAI 348
FG S + K ++ G F ++ + +N+ N + +
Sbjct: 377 WVNIINKKAKAVFLFGESSQTLKKLILEGGFKKDIFIFNDLSEVINYVYSYIENNQIETL 436
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+ SP C+SFD+FRN+E RG +F++L
Sbjct: 437 LFSPSCSSFDQFRNYEERGDIFKKL 461
>gi|227874381|ref|ZP_03992565.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sinus F0268]
gi|227839789|gb|EEJ50235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sinus F0268]
Length = 456
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 181/378 (47%), Gaps = 53/378 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++ E++ A Q K+ AVTGTNGK+T V+ +G++L + V GN+GNP + A
Sbjct: 94 IIGEIELAYQ--SSKGKLCAVTGTNGKTTTVSLIGEILKSEYSDTHVVGNIGNPFTAEAL 151
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
++ V EVSS+Q+E F P VS + N+TPDHL+RHKTMKNY K
Sbjct: 152 ETEEQSAT-------VCEVSSFQLETIVD-FHPNVSAITNITPDHLDRHKTMKNYIAVKE 203
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRF--NLAWIGAFPGVKIDTEAKTASF------ 199
+ + +L + + L + K + W + K DT+ K + F
Sbjct: 204 SIAENQEEEDSIVLNYMDPELRKFGKKRSLKPKVLWFSSEEEPK-DTKEKESLFLRGDTF 262
Query: 200 ----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
E + + +H ++G+HNY N A +GL +GV ++ + + +
Sbjct: 263 YYKKEDKEEKLFTTKDVH---LLGKHNYENILCAV--GVGLKMGVPMDKIIKVCKKFKPV 317
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG--------------- 300
HR++ V R+ GV + +DSK TN++A L + G V+L+G
Sbjct: 318 EHRIEFV-RERSGVKYYNDSKGTNVDAAIQALRAMPGP--VVLIGGGYDKHVDFDPWVKE 374
Query: 301 --GQAKF----GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
G+ K+ G + I +T NG FA +M +AV A GD ++LSP C
Sbjct: 375 FKGRVKYLVLIGETRNQIAETAKKNGFQNVMFA-EDMDEAVKDCAAYADPGDYVLLSPAC 433
Query: 355 ASFDEFRNFEHRGMVFQE 372
AS+ F+++E RG +F++
Sbjct: 434 ASWGMFKDYEERGRIFKD 451
>gi|421538568|ref|ZP_15984743.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 93003]
gi|402316238|gb|EJU51787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 93003]
Length = 445
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 183/383 (47%), Gaps = 55/383 (14%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++A + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDAVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLNRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDAFCRAMKHAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL--------------- 298
PHR++ + GV ++DDSK TN+ AT + L+ VIL
Sbjct: 306 GLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDA 364
Query: 299 LGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
L G+AK G I + L GL++ A +++AV A A GD ++LSP C
Sbjct: 365 LAGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVFQELAFSA 377
ASFD F+ + HR VF E AF A
Sbjct: 423 ASFDMFKGYAHRSEVFIE-AFKA 444
>gi|291459276|ref|ZP_06598666.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. oral taxon 078 str. F0262]
gi|291418530|gb|EFE92249.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. oral taxon 078 str. F0262]
Length = 452
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 175/370 (47%), Gaps = 41/370 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+ EL+ A Q K+ A+TGTNGK+T V+ VG++L + V GN+GNP + A
Sbjct: 94 IWGELELAYQ--SSRGKLAAITGTNGKTTTVSLVGEILRSHFSDTHVVGNIGNPFTAEAL 151
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
V+EVSS+Q+E F P VS + N+TPDHL+RHK+MKNY K
Sbjct: 152 ET-------EDSSATVIEVSSFQLETIMD-FRPDVSAITNITPDHLDRHKSMKNYIRIKE 203
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN--LAWIGAFPGVKIDTEAKTASFEVPAVG 205
+ + +L + L KG + W + +K + + G
Sbjct: 204 SIAMNQTEEDCVVLNHEDPELRSFGKGKELKPKVLWFSSERELKEGFFLRKDALFFREAG 263
Query: 206 VVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
++ L++ +K++G+HNY N A + +GV + + S + R HR++ V
Sbjct: 264 KEAEELLKVRELKLLGKHNYENVMCAM--AVSYRMGVPMRKIISVCKSFRPVEHRIEFV- 320
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG----QAKFG-----YSGVLIWK 314
R GV++ +DSK TN++A L + G VIL+GG F + G + +
Sbjct: 321 RKRSGVSYYNDSKGTNVDAAIQALRAMPGP--VILIGGGYDKHVDFDDWVKEFKGRVKYL 378
Query: 315 TLVNN------------GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
L+ G FA +M +AV A +GD ++LSP CAS+ F++
Sbjct: 379 VLIGQTRSQIANCAKKYGFKNIMFA-EDMDEAVRDCAAYADSGDFVLLSPACASWGMFKD 437
Query: 363 FEHRGMVFQE 372
+E RG +F++
Sbjct: 438 YEERGQIFKD 447
>gi|433536048|ref|ZP_20492564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 77221]
gi|432275852|gb|ELL30918.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 77221]
Length = 445
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 183/383 (47%), Gaps = 55/383 (14%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL--------------- 298
PHR++ + + GV ++DDSK TN+ AT + L+ VIL
Sbjct: 306 GLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDA 364
Query: 299 LGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
L G+AK G I + L +G + A +++AV A A GD ++LSP C
Sbjct: 365 LAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQTAYAQAEAGDIVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVFQELAFSA 377
ASFD F+ + HR VF E AF A
Sbjct: 423 ASFDMFKGYAHRSEVFIE-AFKA 444
>gi|329895277|ref|ZP_08270919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium IMCC3088]
gi|328922399|gb|EGG29742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium IMCC3088]
Length = 452
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 176/366 (48%), Gaps = 39/366 (10%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
SG V+ +LD + ++ +TG+NGKSTV T VG+ML G+ A VGGNL S
Sbjct: 98 SGASVLGDLDLFMEAA--KAPVIGITGSNGKSTVTTLVGEMLAKAGLRAAVGGNL----S 151
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AA + +V V+E+SS+Q+E N V+VVLN+T DH++ H +M Y
Sbjct: 152 PAALAIL-----DDDIEVYVLEMSSFQLERSNALGL-DVAVVLNVTADHIDHHGSMAAYH 205
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
K +F ++ + L + + + GA D E K + +
Sbjct: 206 AAKHRIF----RKAKAVVVNDDDVLTQPLVDSTVQVTRYGA--KAHRDAEFKLLN-DALW 258
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+GV + + M + GRHN+ NA VA D+ EA+ +T+ PHR ++V
Sbjct: 259 MGVSKIIDVSEMALRGRHNHLNALVACAIAACFDVAA--EAMAATLRTFSGLPHRCRVVQ 316
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS-------------GV 310
I GVT+++DSKATN+ A + + + ++LL G G V
Sbjct: 317 T-IAGVTYINDSKATNVGAALAAIEGIGPNSDLVLLAGGLGKGQDFSALVPAINRYVREV 375
Query: 311 LIWKTLVNNGLSI----PCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
+++ ++ P V N++ AV+ A +A GD ++LSP CAS D+F+N++ R
Sbjct: 376 IVFGEAAGELAALPLLRPAIQVENLQQAVSRAAEIAQPGDTVLLSPACASMDQFKNYQDR 435
Query: 367 GMVFQE 372
G F +
Sbjct: 436 GDQFSD 441
>gi|336323929|ref|YP_004603896.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flexistipes
sinusarabici DSM 4947]
gi|336107510|gb|AEI15328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flexistipes
sinusarabici DSM 4947]
Length = 422
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 185/380 (48%), Gaps = 74/380 (19%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V SE++ A + +P KI+ VTGTNGKST+ Q+L +G +A GN+G S+ A
Sbjct: 68 KVTSEVEIAYENLPSEAKIVGVTGTNGKSTITYLTWQILQQMGADAVYCGNIGRTFSKVA 127
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKY----FCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + VVE+SSYQ+++ + FC + N+TPDHL+R++ +KNY
Sbjct: 128 I--------EGDYDIYVVELSSYQIDLLKNFRMDAFC-----ICNVTPDHLDRYRDIKNY 174
Query: 143 ALTKCHLFSHMVNTKLGLLP---FGNQHLNEAIKGHRFNLAWIGAFPGVKIDT------E 193
A +K + + LL F N ++++++ F + FP +K D
Sbjct: 175 AASKLAALKFVKAKRSYLLDSPVFENFNISKSV---NFIDPEMKKFPVIKNDILDFGRFY 231
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA---ALSVLGLDIGVDVEALNSTIE 250
A T S+ + G HN N A A A V GL DV A+ S+++
Sbjct: 232 ADTRSYPLS----------------GWHNLLNLAFAMCLADEVYGLQ--GDVSAIVSSLQ 273
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSG 309
L HR + +GV +++DSK+TN E+T T L L G+ ++L+GG+ K YS
Sbjct: 274 SLE---HRCEKFAES-KGVQYINDSKSTNPESTITALNALSGN-VILLMGGRIKNADYSE 328
Query: 310 VL-----IWKTLVNNG-------------LSIPCFAVANMKDAVNHARRMATNGDAIVLS 351
+ K LV G + ++ +AV+ A A +GD ++LS
Sbjct: 329 TAKPINKVVKKLVLFGEAADSLNRQLEGYFDVETLVCTSIDEAVDIALLSAKSGDTVLLS 388
Query: 352 PGCASFDEFRNFEHRGMVFQ 371
PGC+SFD F NFE RG F+
Sbjct: 389 PGCSSFDSFHNFEERGKYFK 408
>gi|269468117|gb|EEZ79827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured SUP05
cluster bacterium]
Length = 434
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 185/365 (50%), Gaps = 52/365 (14%)
Query: 37 QVIPRSIK--ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPS 94
++ R +K ++ +TG+NGKSTV +G M+ + + VGGN+G P A C+
Sbjct: 93 ELFSRFVKAPVIGITGSNGKSTVTQLLGDMITNSDKKVAVGGNIGKP----ALDCL---- 144
Query: 95 SKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154
+ V+E+SSYQ++ N+ T VVLN+TPDHL+R+ + +Y +K L+ +
Sbjct: 145 -DDQIDYYVLELSSYQLDYTNQLKLLT-GVVLNITPDHLDRYDSFDDYTDSKLSLYRYCQ 202
Query: 155 NTKLGLLPFGNQHLNEAIKGHRFNLAWIG-AFPGVKIDTEAKT---ASFEVPAVGVVSQL 210
+ + +L+E I + N G P D T + + + VV +
Sbjct: 203 DLVV--------NLDEVIVPKKNNAKHFGIDMPKRADDFGTVTCHGSCYLIKGDDVV--M 252
Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
+ M+++G HN N +AAL+ LG IG+ VE + +I+ + HR++ V + QGV
Sbjct: 253 SVSEMQLIGEHNVANM-LAALA-LGDQIGLSVELMAQSIKNFKGLEHRLEWVAKK-QGVD 309
Query: 271 WVDDSKATNLEATCTGLMDL--KGHKCVILLGGQAK---------------FGYSGVLIW 313
+ +DSKATN +T L L K V++ GG AK FG VLI
Sbjct: 310 YYNDSKATNSISTIQALKALIDKHENIVLIAGGIAKEEDYSVMFKLIDENVFGV--VLIG 367
Query: 314 KTLVNNGLSI--PCFAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
++ + G S+ P + A M +AVN A M +G IVLSP CASFD F NFE RG F
Sbjct: 368 QSAADFGQSLNRPQVSYAQTMSEAVNLASGMLNDG-VIVLSPACASFDMFANFEERGQAF 426
Query: 371 QELAF 375
++ F
Sbjct: 427 KDQVF 431
>gi|423312892|ref|ZP_17290828.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
vulgatus CL09T03C04]
gi|392686923|gb|EIY80222.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
vulgatus CL09T03C04]
Length = 444
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 186/377 (49%), Gaps = 45/377 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKSQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV-- 310
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K Y+ +
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDKGNDYNEIAD 362
Query: 311 --------LIWKTLVNNGL-------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
LI+ L N L +P V +MKDAV+ A RMA G+ ++LSP CA
Sbjct: 363 LVKEKCTGLIYMGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLLSPCCA 422
Query: 356 SFDEFRNFEHRGMVFQE 372
SFD F+++E RG F+E
Sbjct: 423 SFDLFKSYEDRGEQFKE 439
>gi|294778000|ref|ZP_06743434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
vulgatus PC510]
gi|294448058|gb|EFG16624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
vulgatus PC510]
Length = 444
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 186/377 (49%), Gaps = 45/377 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKSQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV-- 310
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K Y+ +
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDKGNDYNEIAD 362
Query: 311 --------LIWKTLVNNGL-------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
LI+ L N L +P V +MKDAV+ A RMA G+ ++LSP CA
Sbjct: 363 LVKEKCTGLIYMGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLLSPCCA 422
Query: 356 SFDEFRNFEHRGMVFQE 372
SFD F+++E RG F+E
Sbjct: 423 SFDLFKSYEDRGEQFKE 439
>gi|385323547|ref|YP_005877986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
D-glutamic acid adding enzyme) [Neisseria meningitidis
8013]
gi|261391934|emb|CAX49396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
D-glutamic acid adding enzyme) [Neisseria meningitidis
8013]
Length = 445
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 179/376 (47%), Gaps = 54/376 (14%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL--------------- 298
PHR++ + + GV ++DDSK TN+ AT + L+ VIL
Sbjct: 306 GLPHRVEKIGKK-NGVVFIDDSKGTNVGATAAAITGLQNPLFVILGGMGKGQDFTPLRDA 364
Query: 299 LGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
L G+AK G I + L +G + A +++AV A A GD ++LSP C
Sbjct: 365 LAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYAQAEAGDIVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVF 370
ASFD F+ + HR VF
Sbjct: 423 ASFDMFKGYAHRSEVF 438
>gi|319639798|ref|ZP_07994528.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_1_40A]
gi|345518945|ref|ZP_08798378.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
4_3_47FAA]
gi|254833581|gb|EET13890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
4_3_47FAA]
gi|317388615|gb|EFV69464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_1_40A]
Length = 444
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 186/377 (49%), Gaps = 45/377 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKSQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV-- 310
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K Y+ +
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDKGNDYNEIAD 362
Query: 311 --------LIWKTLVNNGL-------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
LI+ L N L +P V +MKDAV+ A RMA G+ ++LSP CA
Sbjct: 363 LVKEKCTGLIYMGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLLSPCCA 422
Query: 356 SFDEFRNFEHRGMVFQE 372
SFD F+++E RG F+E
Sbjct: 423 SFDLFKSYEDRGEQFKE 439
>gi|150003965|ref|YP_001298709.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
vulgatus ATCC 8482]
gi|149932389|gb|ABR39087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
vulgatus ATCC 8482]
Length = 444
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 186/377 (49%), Gaps = 45/377 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKSQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L+ C + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SLAYQVAEC--------NYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV-- 310
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K Y+ +
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDKGNDYNEIAD 362
Query: 311 --------LIWKTLVNNGL-------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
LI+ L N L +P V +MKDAV+ A RMA G+ ++LSP CA
Sbjct: 363 LVKEKCTGLIYMGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLLSPCCA 422
Query: 356 SFDEFRNFEHRGMVFQE 372
SFD F+++E RG F+E
Sbjct: 423 SFDLFKSYEDRGEQFKE 439
>gi|374620460|ref|ZP_09692994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium HIMB55]
gi|374303687|gb|EHQ57871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium HIMB55]
Length = 453
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 180/376 (47%), Gaps = 52/376 (13%)
Query: 23 QSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q G + ++D F A+ ++ +TG+NGKSTV TFVGQ+L G+ +GGNLG
Sbjct: 93 QIGVEIRGDIDVFVAET---DKPVIGITGSNGKSTVTTFVGQLLKSCGLHVALGGNLGTG 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL + + + V+E+SS+Q+E V+ VLNLTPDHL+RHKTM
Sbjct: 150 ---------ALDLLEQEADIYVLELSSFQLERAGDLNL-AVATVLNLTPDHLDRHKTMPL 199
Query: 142 YALTKCHLFSH----MVNTKLGL-LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
Y L K +F +VN + L LP G KG AW P ++ +
Sbjct: 200 YHLAKHRIFPGAKHVVVNARDPLTLPVG--------KGDVAWTAWRDDEPDLQQLGIRQI 251
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRT 254
A G S ++ ++ V+G N N AA+A GL+ ++ + S L+
Sbjct: 252 EGEPWIAFGFESLIRCADLPVVGEQNTRNVLAALAICRGAGLEFSQLIKGVGS----LQG 307
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS------ 308
PHR + + + GV++++DSKATN+ A + + L K +IL+ G G S
Sbjct: 308 LPHRCERIA-ETGGVSFINDSKATNIGAAVSAISGLATGKNIILIAGGEAKGQSFEALSK 366
Query: 309 --------GVLIWKTLVNNGLSIPCFAVA----NMKDAVNHARRMATNGDAIVLSPGCAS 356
+LI ++P A +M AV +AT GD ++LSP CAS
Sbjct: 367 AVKETCKQVILIGAATTEIAENLPSETAAVFADSMDAAVEIGASLATPGDVVLLSPACAS 426
Query: 357 FDEFRNFEHRGMVFQE 372
FD F N++ RG F+E
Sbjct: 427 FDMFDNYQQRGDSFRE 442
>gi|261379336|ref|ZP_05983909.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
subflava NJ9703]
gi|284797775|gb|EFC53122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
subflava NJ9703]
Length = 445
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 182/380 (47%), Gaps = 56/380 (14%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLAGIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K + V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADMWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHKADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AA+A +GL EAL ++ +
Sbjct: 253 TGCLK---QGNEDLIATQDIPLQGLHNAANVMAAIALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL--------------- 298
PHR++ + GV ++DDSK TN+ AT + L+ VIL
Sbjct: 306 GLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDA 364
Query: 299 LGGQAK----FGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
L G+AK G I + L GL+ I C A +++AV A A GD ++LSP
Sbjct: 365 LAGKAKGVFLIGVDAPQIRRDLDGCGLNMIDC---ATLEEAVQKAYAQAEAGDIVLLSPA 421
Query: 354 CASFDEFRNFEHRGMVFQEL 373
CASFD F+ + HR VF E+
Sbjct: 422 CASFDMFKGYAHRSEVFIEV 441
>gi|206895540|ref|YP_002247022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
proteolyticus DSM 5265]
gi|206738157|gb|ACI17235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
proteolyticus DSM 5265]
Length = 441
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 132/390 (33%), Positives = 189/390 (48%), Gaps = 52/390 (13%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
F L L L G V+ EL+ + R +AVTGTNGK+T +F+G +L G
Sbjct: 73 FSLDHPVLRSLKDRGVPVVGELELSFDA-SRWNYWIAVTGTNGKTTTTSFIGHLLRTAGF 131
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGN+G P++ + P S+ + V EVSS+Q+E + F P V+V LNLTP
Sbjct: 132 NVVVGGNIGVPVTS----FLNEPISE---TIIVAEVSSFQLETVHT-FRPQVAVFLNLTP 183
Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI 190
DHL+RH +M+NY TK +F LG+L ++ + I + G G
Sbjct: 184 DHLDRHGSMENYFQTKARIFKLQQPQDLGVLNAEDRWASSLIGSLKSRTLAFGIEKG--- 240
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVL---GLDIGVDVEAL 245
D V V S + ++K+ GRHN N A VAA L G D G
Sbjct: 241 DVHWSEGFLNVLGTTVAS---VSDVKLRGRHNLANIAAGVAACYHLLPDGFDFG------ 291
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK- 304
S I P HR++ V R + GV++ DDSKATN ++T L + V++LGG+ K
Sbjct: 292 -SAISQFCAPEHRIEFV-RSVGGVSFYDDSKATNPDSTIVALEAFQ-EPVVVILGGRNKG 348
Query: 305 ---------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 343
G + I ++L+ NG A ++++AV+ A +A
Sbjct: 349 MDFAALAEFIKRKSTVKWAVVMGEAKESIKESLLANGFENISEA-DSLEEAVHLAYEIAA 407
Query: 344 NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
GD ++LSP CASFD F+NFE RG F+E+
Sbjct: 408 PGDVVLLSPACASFDMFKNFEERGDRFKEI 437
>gi|83589692|ref|YP_429701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
thermoacetica ATCC 39073]
gi|118595666|sp|Q2RK81.1|MURD_MOOTA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|83572606|gb|ABC19158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
thermoacetica ATCC 39073]
Length = 455
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 184/380 (48%), Gaps = 35/380 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA G V SEL+ A +++P +K++A+TGTNGK+T + G++L G A VGGN
Sbjct: 83 LARARARGIPVWSELELAYRLLPPGVKVVAITGTNGKTTTTSLCGRILQEAGWPAVVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + IA P S V EVSS+Q+E F P V+ +LN+TPDHL+RH
Sbjct: 143 IGIPLVK-ELQEIA-PGS-----YVVCEVSSFQLEAITS-FHPQVAAILNITPDHLDRHG 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAK 195
+++NY K + ++ +L + + H G R + + P + E
Sbjct: 195 SLENYIAAKARVMAYQEARDFAILNYDDPHTRSLAGGARSRVLFFSRRERPPLGAWLEDG 254
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
++ A G V + + G HN N+ AAL L +GVD E L T++
Sbjct: 255 VICCDLGAGGTVKLCHCEELSLKGSHNLENSMAAALVA--LALGVDPEQLTRTLKTFPAV 312
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------- 304
PHR++ V +I GV +++DSK TN EAT + + + V++ GG+ K
Sbjct: 313 PHRLEPVA-EINGVCYINDSKGTNPEATMKAI-NAYSNPLVLIAGGRNKGSDFTLLAQQM 370
Query: 305 ---------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
G + + + G+ + + AV A A GD ++LSP CA
Sbjct: 371 AGRVKHLVLVGEAARELEQAARKAGID-SIYLAPDFASAVREAAGAARPGDIVMLSPACA 429
Query: 356 SFDEFRNFEHRGMVFQELAF 375
S+D F+N+E RG VF+ L
Sbjct: 430 SWDMFKNYEERGDVFKSLVL 449
>gi|421554230|ref|ZP_16000178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 98008]
gi|402333500|gb|EJU68803.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 98008]
Length = 445
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 179/376 (47%), Gaps = 54/376 (14%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGAP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL--------------- 298
PHR++ + + GV ++DDSK TN+ AT + L+ VIL
Sbjct: 306 GLPHRVEKIGKK-NGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDA 364
Query: 299 LGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
L G+AK G I + L +G + A +++AV A A GD ++LSP C
Sbjct: 365 LAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYAQAEAGDIVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVF 370
ASFD F+ + HR VF
Sbjct: 423 ASFDMFKGYAHRSEVF 438
>gi|421485324|ref|ZP_15932883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
piechaudii HLE]
gi|400196243|gb|EJO29220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
piechaudii HLE]
Length = 510
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 130/397 (32%), Positives = 180/397 (45%), Gaps = 68/397 (17%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R +++L + PR +LAVTGTNGK+TV +++ G+ GN+ A
Sbjct: 118 RALADLAETREYRPR---LLAVTGTNGKTTVTALTRDLIDASGLSVVAAGNISPAALTAL 174
Query: 87 FHCI---ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ ALP QV V+E+SS+Q+E + +VVLN+T DHL+ H M+ YA
Sbjct: 175 IDALDNDALP------QVWVLELSSFQLET-TRSLMADAAVVLNVTQDHLDWHGGMEAYA 227
Query: 144 LTKCHLFS---------------HMVNT--KLGLLPFGNQHLNEAIKGHRFNL----AWI 182
K L MV T L + FG + + E + L AW+
Sbjct: 228 EAKARLLKMARIAIVNRDDPLTVRMVQTVNALNVRSFG-RDMPELVGDMGLELGQGVAWL 286
Query: 183 GAFPGVKIDTEA------KTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLG 235
A V D A K A V A G +S+L + +++ G HN NA A
Sbjct: 287 VAAEPVDFDEPAPPVRRKKDAPEPVRANGRMSRLMPVDALRIRGIHNALNALAALQLARC 346
Query: 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
LD+G A+ T+ PHR V R I GV +++DSK TN+ AT L L G
Sbjct: 347 LDLGWG--AMLRTLREYAGEPHRAAFV-RQIGGVDYINDSKGTNVGATVAALEGL-GQPV 402
Query: 296 VILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 335
V++ GGQ K G G I + L G++ C V ++ DAV
Sbjct: 403 VLIAGGQGKGQDFSPLIPVVSRHARAVMLIGVDGPEIGRVLAPTGVN--CITVDSLHDAV 460
Query: 336 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
A +A GDA++LSP CAS D FRN+ HRG VF E
Sbjct: 461 RGAAELAQPGDAVLLSPACASLDMFRNYPHRGQVFVE 497
>gi|402830123|ref|ZP_10878828.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. CM59]
gi|402286180|gb|EJU34656.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. CM59]
Length = 445
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 191/370 (51%), Gaps = 38/370 (10%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++SE++FA++ + KI+A+TG+NGK+T + + +L G+ VGGN+GN +
Sbjct: 85 GIEIISEIEFASRYT--NAKIIAITGSNGKTTTTSLIYHLLEQAGLSVGVGGNIGNSFA- 141
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYA 143
+ + +PK + V+E+SS+Q++ F P ++++LN+TPDHL+R+ +NY
Sbjct: 142 ------YMVAKEPK-EYYVLEISSFQLDDITS-FRPHIALLLNITPDHLDRYNYEFQNYI 193
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA----KTASF 199
K + ++ + + L E + R A + F K +T+ +
Sbjct: 194 DAKFRITAYQEANDYLIYDADDPVLQEELAKRRDIKAQLLPFSLEKANTQGAYCLDEKNI 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ + ++ ++ + G+HN NA A + L+I E++ +++ + PHR+
Sbjct: 254 HINFNQNLLEMSTKDLTIKGKHNLKNAMGATMVAKMLNI--RNESIRNSLMTFQGVPHRL 311
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI------W 313
+ V R+++GV +++DSKATN+ + L ++ + V ++GGQ K LI
Sbjct: 312 EFV-REVEGVKYINDSKATNVNSVYYALDSMEDN-LVWIVGGQDKGNDYNPLIPYVSKKV 369
Query: 314 KTLVNNGLS-----------IPCF-AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
K +V GL IP +M+DAV R +A GD ++LSP CASFD F+
Sbjct: 370 KAIVCLGLDNQKIIQTFQSIIPTIIETHSMEDAVQVGRGLAQEGDTVLLSPACASFDLFQ 429
Query: 362 NFEHRGMVFQ 371
++E RG F+
Sbjct: 430 SYEDRGNQFK 439
>gi|304386674|ref|ZP_07368956.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
meningitidis ATCC 13091]
gi|304339259|gb|EFM05337.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
meningitidis ATCC 13091]
Length = 445
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 179/376 (47%), Gaps = 54/376 (14%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL--------------- 298
PHR++ + GV ++DDSK TN+ AT + L+ VIL
Sbjct: 306 GLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLCDA 364
Query: 299 LGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
L G+AK G I + L GL++ A +++AV A A GD ++LSP C
Sbjct: 365 LAGKAKGVFLIGIDAPKIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVF 370
ASFD F+ + HR VF
Sbjct: 423 ASFDMFKGYAHRSEVF 438
>gi|421566847|ref|ZP_16012588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM3001]
gi|402344790|gb|EJU79923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM3001]
Length = 445
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 179/376 (47%), Gaps = 54/376 (14%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL--------------- 298
PHR++ + + GV ++DDSK TN+ AT + L+ VIL
Sbjct: 306 GLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDA 364
Query: 299 LGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
L G+AK G I + L +G + A +++AV A A GD ++LSP C
Sbjct: 365 LAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYAQAEAGDIVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVF 370
ASFD F+ + HR VF
Sbjct: 423 ASFDMFKGYAHRSEVF 438
>gi|429745406|ref|ZP_19278824.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
oral taxon 020 str. F0370]
gi|429160026|gb|EKY02508.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
oral taxon 020 str. F0370]
Length = 445
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 186/379 (49%), Gaps = 46/379 (12%)
Query: 18 LACLLQSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
+A Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + G
Sbjct: 84 IAAFKQNGGRVLGDVEILAHILNARGDKVIAITGSNGKTTVTSLVGHLCRQSGLDTVIAG 143
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+G P+ EA + K V V+E+SS+Q+E + P + VLN++ DHL+R+
Sbjct: 144 NIGTPVLEA-----EMQRGGKKADVWVLELSSFQLE-NTESLRPAAAAVLNISEDHLDRY 197
Query: 137 KTMKNYALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+ +YA TK +F ++N + L A+K ++ W
Sbjct: 198 DDLLDYAHTKDKIFRGEGVQVLNA--------DDALCRAMKRAGRDVKWFSLENQADYWF 249
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ T + + G++ + ++ + G HN N +AAL++ +G+ + L ++
Sbjct: 250 DRDTGRLKAASDGLID---IADIPLQGLHNAAN-VMAALALCEA-VGIPRDTLLPHVKTF 304
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG------------ 300
+ HR++ + + G+T++DDSK TN+ AT + L+ VIL G
Sbjct: 305 KGLAHRVEKIG-EKNGITFIDDSKGTNVGATAAAVNGLQNPLFVILGGLGKGQDFTPLAD 363
Query: 301 ---GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
G+AK G I + L G + A +++AV A A +GD ++LSP
Sbjct: 364 VLRGKAKAVLLIGRDAPQIRRDLA--GADVELIDCATLQEAVQTAYARAKSGDIVLLSPA 421
Query: 354 CASFDEFRNFEHRGMVFQE 372
CAS D F+N+ HR VF E
Sbjct: 422 CASMDMFKNYAHRSEVFVE 440
>gi|416159697|ref|ZP_11605961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis N1568]
gi|433472801|ref|ZP_20430170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 97021]
gi|433481236|ref|ZP_20438505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 2006087]
gi|433483317|ref|ZP_20440553.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 2002038]
gi|433485450|ref|ZP_20442655.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 97014]
gi|325128836|gb|EGC51695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis N1568]
gi|432212240|gb|ELK68182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 97021]
gi|432218534|gb|ELK74391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 2006087]
gi|432222687|gb|ELK78474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 2002038]
gi|432224362|gb|ELK80128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 97014]
Length = 445
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 179/376 (47%), Gaps = 54/376 (14%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL--------------- 298
PHR++ + + GV ++DDSK TN+ AT + L+ VIL
Sbjct: 306 GLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDA 364
Query: 299 LGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
L G+AK G I + L +G + A +++AV A A GD ++LSP C
Sbjct: 365 LAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYAQAEAGDIVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVF 370
ASFD F+ + HR VF
Sbjct: 423 ASFDMFKGYAHRSEVF 438
>gi|431807280|ref|YP_007234178.1| hypothetical protein BPP43_03085 [Brachyspira pilosicoli P43/6/78]
gi|430780639|gb|AGA65923.1| hypothetical protein BPP43_03085 [Brachyspira pilosicoli P43/6/78]
Length = 465
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 192/378 (50%), Gaps = 56/378 (14%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V+ E++FA +IP ++VTGT+GK+T V + +++ +A + GN+GN S+
Sbjct: 110 KVIGEIEFAYNLIPDR-NYISVTGTDGKTTTVNLIYSIISSYK-KARLLGNVGNTFSKEV 167
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
S K + V+E+SS+Q+E + F +SV+LN+ DHL+R+K +++Y K
Sbjct: 168 -------ESIEKDEDIVLELSSFQLETIDN-FHSHISVILNIAEDHLDRYKDIEDYFNAK 219
Query: 147 CHLFSHMVNTKLGLLPFGN----QHLNEAIKGH--RFN-LAWIGAFPGVKIDTEAKTASF 199
++ + + +L + N ++ NE IK FN L + + + +K F
Sbjct: 220 KNITKNQNSNDFLILNYDNFYTNRYYNELIKTKDISFNVLIFSTKYREANLYYNSKDECF 279
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ S + K++G HN N + L+ + +I + E ++ + ++ HR+
Sbjct: 280 YYNGEKIFS---IAKRKLLGMHNIENILASVLACIKDNIPI--EYIDKAVNNFKSIEHRL 334
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGL-----------------MDLKGHKCVI----- 297
+ V ++I GV +++DSKAT++ A + L +D K K +I
Sbjct: 335 EFV-KEIDGVRYINDSKATSMSAVMSALKSFDKNIILIMGGRNKGIDFKPLKSIIEERVK 393
Query: 298 --LLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
+L G+A S ++ V+N + I F +A ++A+++A GD ++LSPGCA
Sbjct: 394 KLILTGEASEDLSSMID----VSNKIIIKDFT-----EAFDYAKKIAVKGDTVLLSPGCA 444
Query: 356 SFDEFRNFEHRGMVFQEL 373
SFD F+N+E RG F+ L
Sbjct: 445 SFDSFKNYEERGKYFKSL 462
>gi|116052448|ref|YP_792760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa UCBPP-PA14]
gi|421176555|ref|ZP_15634218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa CI27]
gi|115587669|gb|ABJ13684.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
aeruginosa UCBPP-PA14]
gi|404530889|gb|EKA40872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa CI27]
Length = 448
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 187/398 (46%), Gaps = 62/398 (15%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + + + F+L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADTVPCWSFDLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 340
G K G LI + L N ++P VA + +AV A
Sbjct: 354 GDGKGADFHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEAVRQAAE 410
Query: 341 MATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 374
+A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 411 LAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|335044836|ref|ZP_08537859.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. oral taxon 108 str. F0425]
gi|333758622|gb|EGL36179.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. oral taxon 108 str. F0425]
Length = 454
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 183/374 (48%), Gaps = 50/374 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ E++ A Q K+ AVTGTNGK+T V+ +G++L + V GN+GNP + A
Sbjct: 97 VIGEIELAYQSCKG--KLCAVTGTNGKTTTVSLIGEILKSQYPDTHVVGNIGNPFTAEAL 154
Query: 88 HCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ V V EVSS+Q+E I + F P VS + N+TPDHL+RHKTMKNY K
Sbjct: 155 DT-------EEQSVTVCEVSSFQLESIVD--FRPNVSAITNITPDHLDRHKTMKNYIAIK 205
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + +L + + L + +G + N+ W + K + F
Sbjct: 206 ESIAVNQTEEDSIVLNYMDSELRKFGKKRGLKPNVLWFSSEEEPKEGFFLRGEEFIYKNK 265
Query: 205 GVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+L + +++++G+HNY N + A+ V L +GV ++ + + + HR++ V
Sbjct: 266 EKEEKLFKTGDLQLLGKHNYEN-VMCAMGV-ALKMGVPMDKIVKVCKKFKPVEHRIEFV- 322
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG-------------- 309
R+ GV + +DSK TN++A L + G V+L+GG GY
Sbjct: 323 RERSGVRYYNDSKGTNVDAAIQALRAMPGP--VLLIGG----GYDKHVDFDAWVKEFKGR 376
Query: 310 ----VLIWKT-------LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
VLI +T NG FA +M +AV A GD ++LSP CAS+
Sbjct: 377 VKYLVLIGETRNQIAACAKKNGFHNLMFA-EDMDEAVKDCAAYADPGDYVLLSPACASWG 435
Query: 359 EFRNFEHRGMVFQE 372
F+++E RG +F++
Sbjct: 436 MFKDYEERGRIFKD 449
>gi|302344210|ref|YP_003808739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfarculus
baarsii DSM 2075]
gi|301640823|gb|ADK86145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
baarsii DSM 2075]
Length = 446
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 184/389 (47%), Gaps = 62/389 (15%)
Query: 18 LACLLQSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
+A ++G V+ E++ + + P ++ I TGTNGKSTV + + ML G+ AF GG
Sbjct: 82 VAAAARNGAEVIGEMELGFRFLRPPAVMI---TGTNGKSTVTSLIAAMLEAEGLRAFAGG 138
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
NLG PL C + ++ AV+EVSS+Q + P V V+LN+T DHL+R+
Sbjct: 139 NLGTPL------CAYVAGAQDD-DWAVLEVSSFQTDTAVS-LRPKVGVILNITDDHLDRY 190
Query: 137 KTMKNYALTKCHLFSHM--------------VNTKLGLLPFGNQHLNEAIKGHRFNLAWI 182
+ + YA +K L ++ V +LGL P + L A HR
Sbjct: 191 DSFEQYAQSKFRLLANQAEGDVAVLCADDPEVAARLGLAP-ASVWLYGAANDHR------ 243
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
PG ++ E + + E+P ++ +L ++ G N N + A + GV
Sbjct: 244 ---PGGRL--ENQRLALELPGRRLI-KLDASRSRLWGGFNKLN--ILAAGLAAAACGVSA 295
Query: 243 EALNSTIEILRTPPHRMQIV-HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
+A+ I+ + HR+ +V RD GV W DDSK TN+ A L L V+LLGG
Sbjct: 296 QAMQRAIDEFQPLGHRLALVAERD--GVAWYDDSKGTNVGAVQAALEAL-ARPAVLLLGG 352
Query: 302 QAKFGYSGVL-----IWKTLV----NNGLSIPC--------FAVANMKDAVNHARRMATN 344
+ K G +L W LV G SI VA++ AV A + A
Sbjct: 353 RDKDGRFALLAPQLAAWARLVICFGEAGASIAGQIEGLAERQVVADLPAAVTLAAQEAKP 412
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
GD ++LSPGCASFD + + RG F+ L
Sbjct: 413 GDVVLLSPGCASFDAYAGYAMRGDHFRRL 441
>gi|159903953|ref|YP_001551297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9211]
gi|159889129|gb|ABX09343.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9211]
Length = 457
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 185/384 (48%), Gaps = 44/384 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G + SE+ A + + + I + VTGTNGK+TV + +LN I +GGN
Sbjct: 81 LNALRNKGIEIESEISLAWKAL-KHIPWIGVTGTNGKTTVTHMLHHVLNSNQINTAMGGN 139
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI-PNKYFCPTVSVVLNLTPDHLERH 136
+G P S+ A I ++P + V+E+SSYQ+E PN P + + LTPDHLERH
Sbjct: 140 VGIPASQIALDSIRSSRTEPNW--LVMELSSYQLETSPN--ISPKIGIWTTLTPDHLERH 195
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
+++NY+ K L N+ + + + L A + W+ + G I+
Sbjct: 196 GSLENYSDIKKRLLE---NSSIRIYNLDDHFLKNA-RSKLMEGIWV-STNGAAINN--NQ 248
Query: 197 ASFEVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A F + + G + + L + + GRHN N + ++ +IG+ + I
Sbjct: 249 ADFWITSKGKLYEKGEEILDTTLLNIPGRHNLQN--LLLVTAAAREIGLSPRDIEQAIAS 306
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------- 304
+ PHR++ + +I+G+ +DSKATN EA GL + +++ GGQ+K
Sbjct: 307 FKGVPHRLEKI-ANIKGIEIFNDSKATNYEAAKIGLEAVPS-PTIVIAGGQSKKGNPNDW 364
Query: 305 -------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA--TNGDAIV 349
FG S ++ + ++ S P ++ DA+ +A +I+
Sbjct: 365 LQALNKKACAVVLFGASANTLFDLIRDSKFSGPVNCFPSLNDAIETVFNLAFEEKAKSIL 424
Query: 350 LSPGCASFDEFRNFEHRGMVFQEL 373
LSP CASFD+++++E RG F+++
Sbjct: 425 LSPACASFDQYKDYEERGNEFKKI 448
>gi|421560583|ref|ZP_16006440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM2657]
gi|254671173|emb|CBA08279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis alpha153]
gi|402339930|gb|EJU75136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM2657]
Length = 445
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 179/376 (47%), Gaps = 54/376 (14%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL--------------- 298
PHR++ + + GV ++DDSK TN+ AT + L+ VIL
Sbjct: 306 GLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDA 364
Query: 299 LGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
L G+AK G I + L +G + A +++AV A A GD ++LSP C
Sbjct: 365 LAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQTAYAQAEAGDIVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVF 370
ASFD F+ + HR VF
Sbjct: 423 ASFDMFKGYAHRSEVF 438
>gi|366162519|ref|ZP_09462274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acetivibrio
cellulolyticus CD2]
Length = 464
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 176/382 (46%), Gaps = 49/382 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ SE++ +V P +I AVTG++GK+T T + ML G ++GGN+G PL
Sbjct: 101 GAQITSEMEVFFEVCPA--QIFAVTGSDGKTTTTTLIYNMLTAQGYNCWLGGNIGTPL-- 156
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
++ + V+E+SS+Q+ P V+VV NL P+HL+ HK+M Y
Sbjct: 157 -----LSKIDEIKETDKVVLELSSFQLHTMT--LSPNVAVVTNLAPNHLDMHKSMDEYIE 209
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF----PGVKIDTEAKTASFE 200
K ++F H + +L F N E K + N+ + G K+D E S
Sbjct: 210 AKKNIFLHQSKSDKVILNFDNDITREFSKDVKGNVVYFSRVNKIDSGAKMDGEMLVYSDG 269
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+V+ ++ + G HN N A +V+ V+++ + + HR++
Sbjct: 270 KDIREIVNS---GDIVIPGVHNIENYLAAIAAVIDY---VEIDTIKRVATTFKGVEHRIE 323
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---------------- 304
+V R++ G+ + +DS A++ T GL K K +++ GG K
Sbjct: 324 LV-RELDGIKFYNDSIASSPSRTIAGLNSFK-QKVILIAGGYDKKIPYDVMGEVLVNKVK 381
Query: 305 ----FGYSGVLIWKTLVN------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
G + I K L++ NG I + +K+AV A A +GD I +SP
Sbjct: 382 CLVLVGQTAPKIEKALLDEVQRTGNGKDINVIKCSTLKEAVQKAYEFAKSGDIITMSPAS 441
Query: 355 ASFDEFRNFEHRGMVFQELAFS 376
ASFD F+NFE RG F+E S
Sbjct: 442 ASFDMFKNFEERGKQFKEFVNS 463
>gi|107100001|ref|ZP_01363919.1| hypothetical protein PaerPA_01001022 [Pseudomonas aeruginosa PACS2]
Length = 448
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 187/398 (46%), Gaps = 62/398 (15%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + +++ F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADSVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 340
G K G LI + L N ++P VA + +AV A
Sbjct: 354 GDGKGADFHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEAVRQAAE 410
Query: 341 MATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 374
+A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 411 LAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|303246305|ref|ZP_07332585.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
fructosovorans JJ]
gi|302492368|gb|EFL52240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
fructosovorans JJ]
Length = 441
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 179/387 (46%), Gaps = 57/387 (14%)
Query: 6 LFLLEFQLKATGLACLLQS--GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQ 63
+ +L ++A GLA L + G +V+SEL+ A+ + + I+AVTG+NGK+T V V
Sbjct: 78 MVVLSPGIRAAGLADCLAACPGAQVLSELELASWFV--TEPIVAVTGSNGKTTTVMLVSH 135
Query: 64 MLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS 123
+L G + F GGN+G PLSE + P V V+EVSS+Q+++ K F P V+
Sbjct: 136 LLEAAGRKVFTGGNIGTPLSEYVL------AGDPA-DVVVLEVSSFQLQL-VKSFRPKVA 187
Query: 124 VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG 183
V+LN +P+HL+ H ++ Y K ++F+ +LP + + +A+ G F A +
Sbjct: 188 VLLNFSPNHLDWHADLEEYLSAKLNIFAAQRPGDTAILP---RDMRDALAGRSFTRADVT 244
Query: 184 AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243
F + F P ++ G HN N A L+ GV E
Sbjct: 245 WF--------EPSGRFVCP-------------RLAGAHNRQNMEAAFLAT--QPFGVTEE 281
Query: 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303
E PHR+QI+ + GV +VDDSKAT + A L +L GG
Sbjct: 282 IAKVAFERFAPAPHRLQIIG-EKGGVLFVDDSKATTVAAMEAALRSFD-RPVRLLCGGVF 339
Query: 304 KFGYSGV---LIWKTLVNNGL--------------SIPCFAVANMKDAVNHARRMATNGD 346
K G L+ + + GL +P F +K AV A GD
Sbjct: 340 KGGDLAALSPLLKERVAAVGLFGAGREVFEAAWAGQVPLFHEPTLKPAVTRLFAEARPGD 399
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQEL 373
++LSP ASFD + ++ RG FQ++
Sbjct: 400 VVLLSPATASFDLYDGYKARGRDFQDI 426
>gi|355650326|ref|ZP_09056026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas sp.
2_1_26]
gi|354826875|gb|EHF11078.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas sp.
2_1_26]
Length = 448
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 187/398 (46%), Gaps = 62/398 (15%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + +++ F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADSVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 340
G K G LI + L N ++P VA + +AV A
Sbjct: 354 GDGKGADFHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEAVRQAAE 410
Query: 341 MATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 374
+A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 411 LAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|208778934|ref|ZP_03246280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
novicida FTG]
gi|208744734|gb|EDZ91032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
novicida FTG]
Length = 417
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 175/370 (47%), Gaps = 63/370 (17%)
Query: 27 RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+++S++D Q I + K +AVTG+NGKSTVVT +L LG ++ + GN+G P
Sbjct: 80 KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
AL KF VVEVSS+Q+++ N C + ++N++PDHL+R++ + Y
Sbjct: 136 -----ALNKIGEKFDYCVVEVSSFQIDLFN---CVRFDLGCIINVSPDHLDRYQNFEQYK 187
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+KL L F N + H + + G + ++ +
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQIIRGAIYRNSTKL---- 230
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
L + K+ G HN N V L LGLDI +A++S I+ + HR +I
Sbjct: 231 ------LDIAETKLFGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAKFGYSGVLIW------- 313
V + + T+++DSK TN+ AT L + K +I LLGG AK G ++I
Sbjct: 281 VKK-VNDTTYINDSKGTNVGATIAALNSITNSKNIILLLGGVAKGGDFSLMIKSLDKYVK 339
Query: 314 --------KTLVNNGLSIPCFA--VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
K + + + C NMK A A + A + + ++LSP CASFDEF +
Sbjct: 340 YVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEIVLLSPACASFDEFSGY 399
Query: 364 EHRGMVFQEL 373
RG VFQ L
Sbjct: 400 AQRGEVFQNL 409
>gi|237709499|ref|ZP_04539980.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
9_1_42FAA]
gi|265754705|ref|ZP_06089757.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_1_33FAA]
gi|423230229|ref|ZP_17216633.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL02T00C15]
gi|423241043|ref|ZP_17222157.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL03T12C01]
gi|423243941|ref|ZP_17225016.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL02T12C06]
gi|229456555|gb|EEO62276.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
9_1_42FAA]
gi|263234819|gb|EEZ20387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_1_33FAA]
gi|392631738|gb|EIY25707.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL02T00C15]
gi|392643105|gb|EIY36863.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL03T12C01]
gi|392643459|gb|EIY37209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
CL02T12C06]
Length = 444
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 187/377 (49%), Gaps = 45/377 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKAQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L A ++ + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SL--------AYQVAEYNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV-- 310
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K Y+ +
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDKGNDYNEIAD 362
Query: 311 --------LIWKTLVNNGL-------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
LI+ L N L +P V +MKDAV+ A RMA G+ ++LSP CA
Sbjct: 363 LVKEKCTGLIYMGLHNEKLHAFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLLSPCCA 422
Query: 356 SFDEFRNFEHRGMVFQE 372
SFD F+++E RG F+E
Sbjct: 423 SFDLFKSYEDRGEQFKE 439
>gi|424944821|ref|ZP_18360584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa NCMG1179]
gi|346061267|dbj|GAA21150.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa NCMG1179]
Length = 448
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 186/398 (46%), Gaps = 62/398 (15%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + + + F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADTVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 340
G K G LI + L N ++P VA + +AV A
Sbjct: 354 GDGKGADFHDLREPVARFCRAVVLLGRDAELIAQALGN---AVPLVRVATLDEAVRQAAE 410
Query: 341 MATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 374
+A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 411 LAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|429749513|ref|ZP_19282632.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 332 str. F0381]
gi|429168050|gb|EKY09911.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 332 str. F0381]
Length = 445
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 186/373 (49%), Gaps = 39/373 (10%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+SE++FAAQ + I +A+TG+NGK+T +L G+ +GGN+G
Sbjct: 84 ERGIAVISEIEFAAQYTDKPI--IAITGSNGKTTTTMLTYHLLKEAGLSVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E H S P + V +E+SS+Q++ +F P ++++LN+TPDHL+R+ +N
Sbjct: 142 AELVAH------SNPDYYV--LEISSFQLDGIATHFAPHIAMLLNITPDHLDRYNYQFEN 193
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA---KTAS 198
Y +K + + + ++ + + ++ H+ A + F K E K
Sbjct: 194 YIASKFRIAMNQTANDYLIYDADDEVIADWLRHHKV-AAKLLPFTVKKEVAEGAYLKDNK 252
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ +++++ + + G HN N A ++ L V ++L +++ + HR
Sbjct: 253 IYMKIDEKTTEIEVDEISLKGIHNVKNTMAATIAARLL--AVRDQSLRQSLKGFKGADHR 310
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVN 318
++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K G + +
Sbjct: 311 LEEV-KVVDGVTYVNDSKATNVNSVFFALDTIKT-PIVWIVGGQDK-GNDYQSLMPYVQE 367
Query: 319 NGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFDE 359
+I C V N M++AV A+ A +GD ++LSP CASFD
Sbjct: 368 KVKAIVCLGVDNTPLLRSFASVMPNLVETRSMEEAVRLAKHFAASGDTVLLSPACASFDL 427
Query: 360 FRNFEHRGMVFQE 372
F N+EHRG +F+E
Sbjct: 428 FDNYEHRGNMFKE 440
>gi|423093677|ref|ZP_17081473.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens Q2-87]
gi|397889042|gb|EJL05525.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens Q2-87]
Length = 448
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 116/362 (32%), Positives = 171/362 (47%), Gaps = 60/362 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMK 216
Q + E + F L + F G + E K +FE + + + +K
Sbjct: 216 RQDALTRPLIGEGLPYWTFGLG-VPDFKGFGLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V G HN A A LG +G+ EA+ S + HR Q V RD+ GV W +DSK
Sbjct: 270 VRGAHN--QANALAALALGHAVGLPFEAMLSALRNFAGLEHRCQWV-RDLDGVAWYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLI 312
ATN+ A + D++G K V++ GG K G LI
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGADFKDLRDPVAANCRAVVLMGRDRELI 385
Query: 313 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+ L G ++P VA++ +AV R +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 386 AQAL---GDAVPLIRVASLDEAVQQCRALAQPGDAVLLSPACASFDMFKNYEERGQLFAR 442
Query: 373 LA 374
A
Sbjct: 443 AA 444
>gi|313891490|ref|ZP_07825103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
microaerophilus UPII 345-E]
gi|313120067|gb|EFR43246.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
microaerophilus UPII 345-E]
Length = 449
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 188/379 (49%), Gaps = 52/379 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A + SI LAVTGTNGK+T +G ML + G + V GNLG LS+ A
Sbjct: 91 VISEIELAFCITKASI--LAVTGTNGKTTTTKLLGLMLKNSGKKFAVAGNLGVSLSDKA- 147
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
L K + EVSS+Q+E K F P + +LN+TPDHLERH TM+ Y K
Sbjct: 148 ---DLIDEKS---IIAAEVSSFQLEFI-KNFKPKAAAILNITPDHLERHHTMEAYVQAKA 200
Query: 148 HLFSHMVNTKLGLLPFGNQHLNE----AIKGHRFNLAWI------GAFPGVKIDTEAKTA 197
+F +M LL +++ NE A K L I GAF +D E
Sbjct: 201 RIFENMNFENCILLNADDKYTNELTEMANKHTNVCLFSIQKNIDNGAF----LDGEELVI 256
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
S++ + + + ++ +++ G+ NY NA A S L G+ +EA+ + ++ + PH
Sbjct: 257 SYKGNKINICN---INELQIKGKQNYANALAA--SFLAFFSGISLEAIRAALKEFKGLPH 311
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------- 304
R++ V R + + + +DSKATN +A+ G M+ +++ GG K
Sbjct: 312 RIEFV-RKFKDINYYNDSKATNTDASIKG-MEAFDKPVILIAGGHDKGIPLSEYMKKVKE 369
Query: 305 -------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
G + K +N G+S A +M+DAV A + A GD I+LSP C+SF
Sbjct: 370 HTKELILIGEATERFEKVAINEGVSNITRA-KDMEDAVYKATKFAEAGDIIILSPACSSF 428
Query: 358 DEFRNFEHRGMVFQELAFS 376
D ++N RG F+ + S
Sbjct: 429 DMYKNMAERGNDFKRIVNS 447
>gi|212692810|ref|ZP_03300938.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
gi|345514543|ref|ZP_08794054.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
5_1_36/D4]
gi|212664599|gb|EEB25171.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
dorei DSM 17855]
gi|229436645|gb|EEO46722.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
5_1_36/D4]
Length = 444
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 187/377 (49%), Gaps = 45/377 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 83 LKAQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIGQ 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L A ++ + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 141 SL--------AYQVAEYNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQ 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L++ I GH + A G E
Sbjct: 191 MQNYVDAKFRIIQNQTPDDAFIFWNDDPVIQRELHKYGIHGHYYPFAERKE-EGTAAYVE 249
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
F P + ++ + + G HN N+ A +S L G+ E + + +
Sbjct: 250 QDKVYFTEP---IAFNMEQEELALTGTHNLFNSMAAGISA-NL-AGIRKECIREALGDFK 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV-- 310
HR++ V R ++GV +++DSKATN+ + L +K K +++LGG+ K Y+ +
Sbjct: 305 GVEHRLEKVCR-VRGVDYINDSKATNVNSCWYALQSMKT-KTILILGGKDKGNDYNEIAD 362
Query: 311 --------LIWKTLVNNGL-------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
LI+ L N L +P V +MKDAV+ A RMA G+ ++LSP CA
Sbjct: 363 LVKEKCTGLIYMGLHNEKLHAFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLLSPCCA 422
Query: 356 SFDEFRNFEHRGMVFQE 372
SFD F+++E RG F+E
Sbjct: 423 SFDLFKSYEDRGEQFKE 439
>gi|416176664|ref|ZP_11609775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M6190]
gi|416190533|ref|ZP_11615782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis ES14902]
gi|433491920|ref|ZP_20449020.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM586]
gi|325132966|gb|EGC55643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M6190]
gi|325138954|gb|EGC61504.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis ES14902]
gi|432230321|gb|ELK85998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NM586]
Length = 445
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 178/376 (47%), Gaps = 54/376 (14%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG------------- 300
PHR++ + GV ++DDSK TN+ AT + L+ VIL G
Sbjct: 306 GLPHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDA 364
Query: 301 --GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
G+AK G I + L +G + A +++AV A A GD ++LSP C
Sbjct: 365 LVGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQTAYAQAEAGDIVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVF 370
ASFD F+ + HR VF
Sbjct: 423 ASFDMFKGYAHRSEVF 438
>gi|15599610|ref|NP_253104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PAO1]
gi|152985250|ref|YP_001350322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PA7]
gi|254238923|ref|ZP_04932246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
aeruginosa C3719]
gi|254244775|ref|ZP_04938097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
aeruginosa 2192]
gi|296391123|ref|ZP_06880598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PAb1]
gi|386060566|ref|YP_005977088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa M18]
gi|392985978|ref|YP_006484565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa DK2]
gi|416859398|ref|ZP_11913829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa 138244]
gi|416876467|ref|ZP_11919272.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa 152504]
gi|418583947|ref|ZP_13148013.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa MPAO1/P1]
gi|418589679|ref|ZP_13153600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa MPAO1/P2]
gi|419751959|ref|ZP_14278368.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PADK2_CF510]
gi|420141555|ref|ZP_14649230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa CIG1]
gi|421155778|ref|ZP_15615244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa ATCC 14886]
gi|421162759|ref|ZP_15621566.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa ATCC 25324]
gi|421182472|ref|ZP_15639948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa E2]
gi|421518967|ref|ZP_15965640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PAO579]
gi|451986254|ref|ZP_21934443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa 18A]
gi|30316126|sp|Q9HVZ9.1|MURD_PSEAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|9950646|gb|AAG07802.1|AE004856_13 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa PAO1]
gi|126170854|gb|EAZ56365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
aeruginosa C3719]
gi|126198153|gb|EAZ62216.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
aeruginosa 2192]
gi|150960408|gb|ABR82433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa PA7]
gi|334838467|gb|EGM17186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa 138244]
gi|334840745|gb|EGM19391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa 152504]
gi|347306872|gb|AEO76986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa M18]
gi|375046426|gb|EHS38987.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa MPAO1/P1]
gi|375051535|gb|EHS44002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa MPAO1/P2]
gi|384401536|gb|EIE47890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PADK2_CF510]
gi|392321483|gb|AFM66863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa DK2]
gi|403245697|gb|EJY59478.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa CIG1]
gi|404346372|gb|EJZ72722.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PAO579]
gi|404519955|gb|EKA30664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa ATCC 14886]
gi|404533365|gb|EKA43195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa ATCC 25324]
gi|404542059|gb|EKA51398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa E2]
gi|451756150|emb|CCQ86966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa 18A]
gi|453046248|gb|EME93965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa PA21_ST175]
Length = 448
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 186/398 (46%), Gaps = 62/398 (15%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + + + F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADTVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 340
G K G LI + L N ++P VA + +AV A
Sbjct: 354 GDGKGADFHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEAVRQAAE 410
Query: 341 MATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 374
+A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 411 LAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|385342563|ref|YP_005896434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M01-240149]
gi|385857876|ref|YP_005904388.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NZ-05/33]
gi|416186513|ref|ZP_11613793.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M0579]
gi|325136987|gb|EGC59584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M0579]
gi|325202769|gb|ADY98223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M01-240149]
gi|325208765|gb|ADZ04217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis NZ-05/33]
Length = 445
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 183/383 (47%), Gaps = 55/383 (14%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL----PREALLEHVKTFQ 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL--------------- 298
PHR++ + + GV ++DDSK TN+ AT + L+ VIL
Sbjct: 306 GLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDA 364
Query: 299 LGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
L G+AK G I + L GL++ A +++AV A A D ++LSP C
Sbjct: 365 LAGKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEACDIVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVFQELAFSA 377
ASFD F+ + HR VF E AF A
Sbjct: 423 ASFDMFKGYAHRSEVFIE-AFKA 444
>gi|12007718|gb|AAG45237.1| MurD [Pseudomonas aeruginosa]
Length = 448
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 186/398 (46%), Gaps = 62/398 (15%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + + + F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADTVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFGKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFSGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 340
G K G LI + L N ++P VA + +AV A
Sbjct: 354 GDGKGADFHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEAVRQAAE 410
Query: 341 MATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 374
+A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 411 LAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|239617755|ref|YP_002941077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
TBF 19.5.1]
gi|239506586|gb|ACR80073.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
TBF 19.5.1]
Length = 449
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 184/385 (47%), Gaps = 68/385 (17%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIK--ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78
+L SGK +EL+FA + + I+ +TGTNGKSTV T VG + G++ F+GGNL
Sbjct: 84 ILSSGKPFTTELEFALDKLKKLEHGVIVGITGTNGKSTVTTMVGHIAKKSGLKTFIGGNL 143
Query: 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME---IPNKYFCPTVSVVLNLTPDHLER 135
G PL + S +F V VVEVSS+Q+ KYF +S +LN+ DHL+
Sbjct: 144 GTPL---------ISSINERFDVYVVEVSSFQLTWFGKKEKYF--HLSSILNIAQDHLDY 192
Query: 136 HKTMKNYALTKCHLF-----SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI 190
H+ M+ YAL K + S ++N+++ L FG+ +++ K I F
Sbjct: 193 HRDMREYALAKLKIIELTSGSSIINSEI-LENFGDLLVDKTKK-------QIIPFS---- 240
Query: 191 DTEAKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEA 244
+ SF G++ + L ++ G HN NAA+ LGL +G+ V
Sbjct: 241 ---TRKDSFFCLKDGIMRLHKLSISLDSLNFPGIHNQENAAIT----LGLAQFLGIHVHD 293
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
++ HRMQ + I GVT+++DSKATN A L + K +I+L G+ K
Sbjct: 294 ALEKLQDYAFLDHRMQKCGQ-INGVTFINDSKATNAHAVINALENFDLEKVIIILSGKEK 352
Query: 305 -------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 345
G S + + L G++ V + +A+ A ++ G
Sbjct: 353 REDYTPLIKKISRVKHIIFLGDSLKSLIERLKKKGITYDV--VHTIDEALKKAVELSKAG 410
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVF 370
D ++ SPG +SFD ++N++ RG F
Sbjct: 411 DIVLFSPGGSSFDLYKNYKERGKDF 435
>gi|218893505|ref|YP_002442374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
aeruginosa LESB58]
gi|218773733|emb|CAW29547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
aeruginosa LESB58]
Length = 448
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 124/398 (31%), Positives = 186/398 (46%), Gaps = 62/398 (15%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L G R+ ++D A+ I+A+TG+N KSTV T VG+M
Sbjct: 79 LSLRTPALVQAAAKGVRISGDIDLFAR--EAKAPIVAITGSNAKSTVTTLVGEMAVAADK 136
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
VGGNLG P AL ++ V+E+SS+Q+E ++ V+ VLN++
Sbjct: 137 RVAVGGNLGTP---------ALDLLADDIELYVLELSSFQLETCDR-LNAEVATVLNVSE 186
Query: 131 DHLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNL--AWIGA 184
DH++R+ M +Y L K +F +VN L + + + F L A
Sbjct: 187 DHMDRYDGMADYHLAKHRIFRGARQVVVNRADALT---RPLIADTVPCWSFGLNKPDFKA 243
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
F ++ D + K +F+ + L + +K+ G HNY NA A G +G+ +A
Sbjct: 244 FGLIEEDGQ-KWLAFQFDKL-----LPVGELKIRGAHNYSNALAALAL--GHAVGLPFDA 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLG 300
+ ++ HR Q V R+ QGV++ DDSKATN+ A + D+ G K V+L G
Sbjct: 296 MLGALKAFPGLAHRCQWV-RERQGVSYYDDSKATNVGAALAAIEGLGADIDG-KLVLLAG 353
Query: 301 GQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARR 340
G K G LI + L N ++P VA + +AV A
Sbjct: 354 GDGKGADFHDLREPVARFCRAVVLLGRDAGLIAQALGN---AVPLVRVATLDEAVRQAAE 410
Query: 341 MATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 374
+A GDA++LSP CAS D F+NFE RG +F +ELA
Sbjct: 411 LAREGDAVLLSPACASLDMFKNFEERGRLFAKAVEELA 448
>gi|304439979|ref|ZP_07399872.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304371471|gb|EFM25084.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 431
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 200/400 (50%), Gaps = 60/400 (15%)
Query: 9 LEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
++F +K+ G+ L +++S+++FA+ ++ I+A+TGTNGK+T+ T V
Sbjct: 51 IDFAVKSPGIKPESKIIKTLEDKNIKIISDIEFASYFY-KTKDIVAITGTNGKTTITTLV 109
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
++LN +G +++ GN+G + + PKF V E SS+Q+ +K F P
Sbjct: 110 NEILNKVG-KSYAVGNIG-------VGVMDVIDYDPKF--IVCEASSFQLAYIDK-FHPH 158
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRF- 177
V+V+ N+T DHL+ HKT++NY K +++ ++ +L + +N +K +
Sbjct: 159 VAVITNITSDHLDWHKTVENYRKAKENIYKNLEEDDFLILGASCDYVKTINAGVKNTFYY 218
Query: 178 ---NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
+L G F D E F+ + +++ ++ + GRHN NA A LS
Sbjct: 219 SYDDLGRPGLFTK---DEEIIFRHFDGTLENI---MKVSDVFIKGRHNIENAMAAILSAY 272
Query: 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHK 294
L GVD+E + TI+ + HR++ V R G+++ +DSK TN ++T L + K
Sbjct: 273 SL--GVDLEIIVDTIKNFKGVEHRIEFV-RTFNGISYYNDSKGTNPDSTDVALKAFE--K 327
Query: 295 CVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDA 334
V+++GG K G + LI K L I V +M++A
Sbjct: 328 SVLIIGGYDKGSDFKKLLEDNKDKITSLVVMGATSELIIKEATE--LGIETTRVKDMEEA 385
Query: 335 VNHARRMA-TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
V+ A +A N ++LSP CAS+D + N+E RG F+E+
Sbjct: 386 VSVATTIARENHSVVLLSPACASWDMYPNYEVRGRHFKEI 425
>gi|167626512|ref|YP_001677012.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|189082909|sp|B0TZ72.1|MURD_FRAP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|167596513|gb|ABZ86511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
philomiragia subsp. philomiragia ATCC 25017]
Length = 414
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 177/367 (48%), Gaps = 55/367 (14%)
Query: 26 KRVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++++S++D Q I + K++AVTG+NGKST+VT + +L +G ++ + GN+G P
Sbjct: 79 QKIVSDIDLFYQSIRNTKAKMIAVTGSNGKSTIVTMLDFVLRDMGYKSILVGNIGTP--- 135
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L KF VVEVSS+Q+++ N + V+N++ DHL+R+K + Y
Sbjct: 136 ------PLNKIGEKFDYCVVEVSSFQIDLFNSVEFD-LGCVVNVSLDHLDRYKNYEEYK- 187
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+KL L F + H + + G + V+ T
Sbjct: 188 ----------QSKLNLAKFSKDFFVYDV--HNTGIKYAGEYQIVRGSIYKDTTKL----- 230
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
L + + G HN N V L++ G+D+ + I+ + HR +IV +
Sbjct: 231 -----LDITETNLFGEHNLENIIVV-LNIFDR-FGIDISKAVAAIKKFKGLKHRCEIV-K 282
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKFG------------YSGVL 311
+I GVT+++DSK TN+ AT L + K +ILL GG AK G V
Sbjct: 283 NIAGVTYINDSKGTNVGATIAALNSITSSKNIILLLGGVAKGGDFSLMSKSLAKYVKYVY 342
Query: 312 IW---KTLVNNGLSIPC-FAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
++ K + N + C + + N MKDA A + A + + ++LSP CASFDEF + R
Sbjct: 343 LYGQDKEYIENYIKDMCRYQICNDMKDAFRLASQKAQDSEIVLLSPACASFDEFSGYAER 402
Query: 367 GMVFQEL 373
G VF++L
Sbjct: 403 GEVFEKL 409
>gi|359796560|ref|ZP_09299157.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
arsenitoxydans SY8]
gi|359365523|gb|EHK67223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
arsenitoxydans SY8]
Length = 510
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 129/396 (32%), Positives = 183/396 (46%), Gaps = 66/396 (16%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R +++L + PR +LAVTGTNGK+TV Q++ G+ GN+ +P + AA
Sbjct: 118 RALADLAQTREYRPR---LLAVTGTNGKTTVTALTRQLIEASGMTVLAAGNI-SPAALAA 173
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ P QV V+E+SS+Q+E + +VVLN+T DHL+ H M+ YA K
Sbjct: 174 LMDALDTEALP--QVWVLELSSFQLETTHTLMA-DAAVVLNVTQDHLDWHGGMQPYAQAK 230
Query: 147 CHLFS----HMVNTK----LGLLPFGN--------QHLNEAIKGHRFNL----AWIGAFP 186
L +VN + ++P N + L E + L AW+ A
Sbjct: 231 ARLLKMARVAIVNRDDSYTVDMVPALNAMHVRSFGRDLPELVGDMGLELGQGVAWLTACE 290
Query: 187 GVKIDTEA------KTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIG 239
D A K A V A G +S+L + +++ G HN NA A LD+G
Sbjct: 291 PSDFDEPAPPVRRKKDAPEPVRAKGRMSRLMPVDALRIRGIHNALNALAALQLARCLDLG 350
Query: 240 VDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV 296
+ + LR PHR V R I GV +++DSK TN+ AT L L G V
Sbjct: 351 -----WGAMLRALREYAGEPHRAAFV-RTIGGVDYINDSKGTNVGATVAALEGL-GQPVV 403
Query: 297 ILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVN 336
++ GGQ K G G I + L G++ C A+++DAV
Sbjct: 404 LIAGGQGKGQDFSPLIPVVSRHARAVMLIGADGPEIGRVLAPTGVN--CVTAASLRDAVR 461
Query: 337 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
A +A GDA++LSP CAS D FRN+ HRG VF E
Sbjct: 462 GAAELAQPGDAVLLSPACASLDMFRNYPHRGQVFVE 497
>gi|392389974|ref|YP_006426577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ornithobacterium
rhinotracheale DSM 15997]
gi|390521052|gb|AFL96783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ornithobacterium
rhinotracheale DSM 15997]
Length = 444
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 188/381 (49%), Gaps = 41/381 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + +++SE++FA+ + I +A+TG+NGK+T + + ML G +
Sbjct: 76 KAALIQKLRKQNVKIISEIEFASWFTQKPI--IAITGSNGKTTTTSLIAHMLRKAGKKVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDH 132
+GGN+G +E + + ++ V+E+SS+Q++ I N F P V+++LN+TPDH
Sbjct: 134 LGGNIGYSFAELVLN-------DEEHELYVLELSSFQLDDIDN--FKPHVAILLNITPDH 184
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+++ + Y K + + + + E +K H +G +K +
Sbjct: 185 LDQYDYDIDKYGEAKLRIAKNQTEEDFFIYNVDDPKTVELLKKHTIKAKMLGY--SLKDE 242
Query: 192 TEAKTASFE--VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS--VLGLDIGVDVEALNS 247
+ A+ E + +++L + ++G HN N+ +AL+ +L L + E+L
Sbjct: 243 HQPAYANEENLILTYPETFRMKLEELALLGEHNVSNSLASALNGNILKLRKKIIQESLTD 302
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGY 307
HR++ V ++G+ +++DSKATN+ AT L +K I+ G Y
Sbjct: 303 ----FDAVEHRLEPV-LSVRGIEFINDSKATNINATFYALQSMKKPTVWIVGGKDKGNDY 357
Query: 308 SGV--LIWKTL-------VNNGLSIPCF--------AVANMKDAVNHARRMATNGDAIVL 350
S + L+ K + V+N + C+ +M+DAV A NGD ++L
Sbjct: 358 SELIPLVKKKVKAIVCLGVDNSKIVECYRDIVPNITETKSMEDAVKAAYEYGENGDTVLL 417
Query: 351 SPGCASFDEFRNFEHRGMVFQ 371
SP CASFD F N+E RG +F+
Sbjct: 418 SPACASFDLFENYEQRGKLFK 438
>gi|313673685|ref|YP_004051796.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940441|gb|ADR19633.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 416
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 181/371 (48%), Gaps = 57/371 (15%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+R+ SEL+ A + I + KI+ +TGTNGKSTV Q+L ++GI A GN+G + +
Sbjct: 67 ERITSELELAFEFI-KDKKIIGITGTNGKSTVTFLTAQLLKNIGINAEFCGNIGVTVGDT 125
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
+ + P V VVEVSS+Q+++ ++ T S + N+TPDHL+R+KTM Y +
Sbjct: 126 --YLLKNP------DVYVVEVSSFQLDLLKRFRFDT-STITNITPDHLDRYKTMDRYITS 176
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG----AFPGVKIDTEAKTASFEV 201
K S MV G+ NE K + N+ ++ ++P + FE
Sbjct: 177 K----SRMVEFTEGVSFLEKGGWNEIFKKYE-NIKYVDGELKSYPLLN----GNLLEFED 227
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL-DIGVDVEALNSTIEILRTPPHRMQ 260
V V + + G HN N + A L + + DV L +E L HR +
Sbjct: 228 FYVDV------NRYNLFGFHNIVNLSFALLLTNQIVRLKGDVTGL---VENLTPLEHRCE 278
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVL--------- 311
+V +I GV +++DSK TN+++T T L + ++LGG+ K G VL
Sbjct: 279 LVT-EINGVKYINDSKGTNVDSTLTALKS-SSYPTTLILGGKDKNGDFSVLSDEINKKAK 336
Query: 312 -----------IWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
I+ +L + + + V +KDA++ A R G ++ SP CASFDEF
Sbjct: 337 LVICCGAAGEKIYNSL-KDIIDVKIVRVELLKDAISLAYRETKEG-TVLFSPACASFDEF 394
Query: 361 RNFEHRGMVFQ 371
NFE RG F+
Sbjct: 395 NNFEERGRFFK 405
>gi|225619140|ref|YP_002720366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hyodysenteriae WA1]
gi|225213959|gb|ACN82693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hyodysenteriae WA1]
Length = 471
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 183/372 (49%), Gaps = 42/372 (11%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+++ E++FA +P +AVTGT+GK+T VT V ++ +A + GN+GN S+
Sbjct: 111 KIIGEIEFAYNFLPNR-NYIAVTGTDGKTTTVTLVHDIIKSYK-KARLLGNVGNTFSKEI 168
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + + ++E+SS+Q+E K F ++ VLN+ DHL+R+K +++Y TK
Sbjct: 169 -------ETIEEDEDVILELSSFQLETVEK-FHAHIAAVLNIAEDHLDRYKDIEDYFNTK 220
Query: 147 CHLFSHMVNTKLGLLPFGN-------QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
++ + +L + N LN K + F + + E + +
Sbjct: 221 KNITINQNKNDFLILNYDNIYTNIWYNELNGNCKMKLLTFSLKSKFATIYYNEEDEYIYY 280
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E + + N KV+G+HN N A L L DI V E + + + HR+
Sbjct: 281 ENEKL-----FSIANRKVIGKHNIANILAAVLICLKDDIPV--EYIEKAVNNFKGIEHRV 333
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLI---W 313
++V I GV +V+DSKAT++ + + L ++++GG+ K F + +I
Sbjct: 334 ELVAT-INGVKYVNDSKATSMNSVMSALKSF-DKDIILIMGGRNKNIDFTHLNNIINARV 391
Query: 314 KTLVNNGLSIPCFA----------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
K L+ G + + V ++ DA N+A ++ NGD ++LSPGC SFD F+N+
Sbjct: 392 KKLILIGEAAEALSEMLHFENKIIVRDLTDAFNYASAISINGDTVLLSPGCTSFDMFKNY 451
Query: 364 EHRGMVFQELAF 375
E RG F+ L +
Sbjct: 452 EERGKYFKSLVY 463
>gi|88807416|ref|ZP_01122928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. WH 7805]
gi|88788630|gb|EAR19785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. WH 7805]
Length = 462
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 185/385 (48%), Gaps = 44/385 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G RV E+ A + R I + +TGTNGK+TV + +L H G+EA + GN
Sbjct: 86 LHALRAHGFRVRGEMSVAWDAL-RGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +E A L ++PK V+E+SSYQ+E + P + + LTPDHLERH
Sbjct: 145 VGYSAAELALEV--LQGTRPKPDWVVMEMSSYQIEAAAE-VSPRIGIWTTLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFPGVKIDTEAK 195
T++ Y K L +++ +L + + + GH R + W+ E
Sbjct: 202 TIEAYRAIKRGLLE---RSEIPVLNADDADIRQHC-GHWSRSCIRWVSCG---DHSPEGG 254
Query: 196 TASFEVPAVGVVSQLQLH-----NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
V A G VS+ + H ++ + G HN N + ++ L GV + + +
Sbjct: 255 NPQLTVNAQGWVSRGEQHLFPADSLPLPGEHNRQN--MLLVTAAALAAGVSASTIEAALR 312
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG---- 306
PHR++ + + G+ +DSKATN +A GL ++ V+L GGQ K G
Sbjct: 313 CFTGVPHRLEPLG-SVGGIPVFNDSKATNYDAAAVGLRSVQA-PVVLLAGGQTKKGDAVP 370
Query: 307 --------YSGVLIW--------KTLVNNGLSIPCFAVANMKDAVNHARRMATN--GDAI 348
+GV+++ + +G + P A++ AV+ A +A N +++
Sbjct: 371 WLKLIQSQVAGVVLFGEGAGELADLIETSGFAGPMIHCADLDSAVSQALSLARNCQANSV 430
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+LSP CASFD++ NFE RG F++L
Sbjct: 431 LLSPACASFDQYPNFEARGDHFRQL 455
>gi|319776623|ref|YP_004139111.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
influenzae F3047]
gi|329124136|ref|ZP_08252683.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
aegyptius ATCC 11116]
gi|317451214|emb|CBY87447.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
influenzae F3047]
gi|327467561|gb|EGF13059.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
aegyptius ATCC 11116]
Length = 437
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 188/404 (46%), Gaps = 66/404 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA +L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTVLKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ +LN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATILNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVAN 330
K +LLGG K FG G L+ K S +
Sbjct: 336 IEGKLHLLLGGDGKGADFSELAELINQPHIICYCFGRDGALLAK------FSSQSYLFET 389
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 390 MEQAIAFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|363897965|ref|ZP_09324502.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oribacterium sp.
ACB7]
gi|361957610|gb|EHL10917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oribacterium sp.
ACB7]
Length = 454
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 183/374 (48%), Gaps = 50/374 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ E++ A Q K+ AVTGTNGK+T V+ +G++L + V GN+GNP + A
Sbjct: 97 VIGEIELAYQSCKG--KLCAVTGTNGKTTTVSLIGEILKSQYPDTHVVGNIGNPFTAEAL 154
Query: 88 HCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ V V EVSS+Q+E I + F P VS + N+TPDHL+RHKTMKNY K
Sbjct: 155 DT-------EEQSVTVCEVSSFQLESIVD--FRPNVSAITNITPDHLDRHKTMKNYIAIK 205
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + +L + + L + +G + N+ W + K + F
Sbjct: 206 ESIAVNQTEEDSIVLNYMDSELRKFGKKRGLKPNVLWFSSEEEPKEGFFLRGEEFIYKNK 265
Query: 205 GVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+L + +++++G+HNY N + A+ V L +GV ++ + + + HR++ V
Sbjct: 266 EKEEKLFKTGDLQLLGKHNYENV-MCAMGV-ALKMGVPMDKIVKVCKKFKPVEHRIEFV- 322
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG-------------- 309
R+ GV + +DSK TN++A L + G V+L+GG GY
Sbjct: 323 RERSGVRYYNDSKGTNVDAAIQALRAMPGP--VLLIGG----GYDKHVDFDAWVKEFKGR 376
Query: 310 ----VLIWKT-------LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
VLI +T +G FA +M +AV A GD ++LSP CAS+
Sbjct: 377 VKYLVLIGETRNQIAACAKKHGFHNLMFA-EDMDEAVKDCAAYADPGDYVLLSPACASWG 435
Query: 359 EFRNFEHRGMVFQE 372
F+++E RG +F++
Sbjct: 436 MFKDYEERGRIFKD 449
>gi|16273062|ref|NP_439294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae Rd KW20]
gi|260580220|ref|ZP_05848050.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
influenzae RdAW]
gi|1171072|sp|P45063.1|MURD_HAEIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|1574691|gb|AAC22791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Haemophilus
influenzae Rd KW20]
gi|260093504|gb|EEW77437.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
influenzae RdAW]
Length = 437
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 187/404 (46%), Gaps = 66/404 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVAN 330
K +LLGG K FG G L+ K S +
Sbjct: 336 IEGKLHLLLGGDGKGADFSELAELINQPHIICYCFGRDGALLAK------FSSQSYLFDT 389
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 390 MEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|329122141|ref|ZP_08250749.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
micraerophilus DSM 19965]
gi|327466948|gb|EGF12464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
micraerophilus DSM 19965]
Length = 449
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 187/379 (49%), Gaps = 52/379 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A + SI LAVTGTNGK+T +G ML + G + V GNLG LS+ A
Sbjct: 91 VISEIELAFCITKASI--LAVTGTNGKTTTTKLLGLMLKNSGKKFAVAGNLGVSLSDKA- 147
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
L K + EVSS+Q+E K F P + +LN+TPDHLERH TM+ Y K
Sbjct: 148 ---DLIDEKS---IIAAEVSSFQLEFI-KNFKPKTAAILNITPDHLERHHTMEAYVQAKA 200
Query: 148 HLFSHMVNTKLGLLPFGNQHLNE----AIKGHRFNLAWI------GAFPGVKIDTEAKTA 197
+F +M LL +++ NE A K L I GAF +D E
Sbjct: 201 RIFENMNFENCILLNADDKYTNELTEMANKHTNVCLFSIQKNIDNGAF----LDGEELVI 256
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
S++ + + ++ +L ++ G+ NY NA A S L G+ +EA+ + ++ + PH
Sbjct: 257 SYKGNKINICNKNEL---QIKGKQNYANALAA--SFLAFFSGISLEAIRAALKEFKGLPH 311
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------- 304
R++ V R + + + +DSKATN +A+ G M+ +++ GG K
Sbjct: 312 RIEFV-RKFKNINYYNDSKATNTDASIKG-MEAFDKPVILIAGGHDKGIPLSEYMKKVKE 369
Query: 305 -------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
G + K + G+S A +M+DAV A + A GD I+LSP C+SF
Sbjct: 370 HTKELILIGEATERFEKVAIKEGVSNITRA-KDMEDAVYKATKFAEAGDIIILSPACSSF 428
Query: 358 DEFRNFEHRGMVFQELAFS 376
D ++N RG F+ + S
Sbjct: 429 DMYKNMAERGNDFKRIVNS 447
>gi|385340654|ref|YP_005894526.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis G2136]
gi|416200857|ref|ZP_11619754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 961-5945]
gi|421556477|ref|ZP_16002392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 80179]
gi|433466620|ref|ZP_20424081.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 87255]
gi|325142974|gb|EGC65331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 961-5945]
gi|325198898|gb|ADY94354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis G2136]
gi|402337150|gb|EJU72400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 80179]
gi|432204730|gb|ELK60769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis 87255]
Length = 445
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 179/379 (47%), Gaps = 60/379 (15%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
T + G + ++ + G HN N AAVA +GL N +E ++
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGL-------PRNELLEHVK 302
Query: 254 T---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL------------ 298
T PHR++ + + GV ++DDSK TN+ AT + L+ VIL
Sbjct: 303 TFQGLPHRVEKIGKK-NGVVFIDDSKGTNVGATAAAITGLQNPLFVILGGMGKGQDFTPL 361
Query: 299 ---LGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 351
L G+AK G I + L +G + A +++AV A A GD ++LS
Sbjct: 362 RDALAGKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYAQAEAGDIVLLS 419
Query: 352 PGCASFDEFRNFEHRGMVF 370
P CASFD F+ + HR VF
Sbjct: 420 PACASFDMFKGYAHRSEVF 438
>gi|384209182|ref|YP_005594902.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
intermedia PWS/A]
gi|343386832|gb|AEM22322.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
intermedia PWS/A]
Length = 471
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 186/372 (50%), Gaps = 42/372 (11%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+++ E++FA IP +AVTGT+GK+T VT + +++ +A + GN+GN S+
Sbjct: 111 KIIGEIEFAYNFIPNR-NYIAVTGTDGKTTTVTLIHEIIKSYK-KARLLGNVGNTFSKE- 167
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + +P + ++E+SS+Q+E K F ++ +LN+ DHL+R++ +++Y TK
Sbjct: 168 -----IETIEPDEDI-ILELSSFQLETVEK-FHAHIAAILNIAEDHLDRYRDIEDYFNTK 220
Query: 147 CHLFSHMVNTKLGLLPFGN-------QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
++ + +L + N LN K + F + + E + +
Sbjct: 221 KNIIINQNKNDFLVLNYDNIYTNIWYNELNGNSKSKLLTFSLKSKFATIYYNEEDEYIYY 280
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E + + N K++G+HN N A L + L G+ + + + + HR+
Sbjct: 281 ENEKL-----FSIANRKLIGKHNIANILAAVL--ICLKDGIPADNIEKVVNNFKGIEHRV 333
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLI---W 313
++V +I GV +++DSKAT++ + + L ++++GG+ K F ++
Sbjct: 334 ELVS-EINGVKYINDSKATSMNSVMSALKSF-DKDIILIMGGRNKNIDFTPLNSIVNARV 391
Query: 314 KTLVNNGLSIPCFA----------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
K L+ G + + V ++ DA N+A +A NGD ++LSPGC SFD F+N+
Sbjct: 392 KKLILMGEAANVLSDMLHFDNKIIVRDLTDAFNYASSIAINGDTVLLSPGCTSFDMFKNY 451
Query: 364 EHRGMVFQELAF 375
E RG F+ L +
Sbjct: 452 EERGKYFKSLVY 463
>gi|375131958|ref|YP_004994058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
NCTC 11218]
gi|315181132|gb|ADT88046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
NCTC 11218]
Length = 439
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 164/354 (46%), Gaps = 52/354 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N GI VGGN+G P A +A P+ ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANAAGIATAVGGNIGVP----ALDLLAQPA-----ELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + T + LNL+ DH++R+ M Y K +F H +VN
Sbjct: 161 ELSSFQLETTSS-LAVTAAAFLNLSEDHMDRYDGMTGYRQAKLRIFEHAQTAVVNAD--- 216
Query: 161 LPFGNQHLNEAIKGH--RFNLAWIGAFPGVKID-TEAKTASFEVPAVGVVSQLQLHNMKV 217
Q +A G RF L F + D E A+ EV L ++ +
Sbjct: 217 ---DTQTYPDAYSGRTVRFGLEQSAEFTTAQHDGKEVLLANGEV-------VLPTSDLSL 266
Query: 218 MGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
+GRHN N +A L G++ + AL S + HR Q+V D QG+ WV+DS
Sbjct: 267 VGRHNVANVLTVLALLDAAGVNYTNTLPALKSYTGLT----HRCQVV-ADNQGIKWVNDS 321
Query: 276 KATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA-------- 327
KATN+ +T L L + + LL G G + L L++ CF
Sbjct: 322 KATNVASTLAALSGLTLNGTLYLLVGGVGKGADFTPLKPVLETLPLTLCCFGRDGDQFMP 381
Query: 328 -------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ + R GD ++LSP CASFD+F+NF RG VF ELA
Sbjct: 382 LHASAQRFDTMEAIIASIRPQLKAGDMVLLSPACASFDQFKNFMARGDVFAELA 435
>gi|357633649|ref|ZP_09131527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
FW1012B]
gi|357582203|gb|EHJ47536.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
FW1012B]
Length = 442
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/366 (31%), Positives = 166/366 (45%), Gaps = 55/366 (15%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G +V+SEL+ A+ + I+AVTG+NGK+T V + +L G + F GGN+G PLSE
Sbjct: 99 GAQVVSELELASWFT--AEPIVAVTGSNGKTTTVMLISHLLEAAGRKVFTGGNIGTPLSE 156
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ P V V+EVSS+Q+++ + F P V V+LN +P+HL+ H + Y
Sbjct: 157 YVL------AGDPA-DVVVLEVSSFQLQL-VRTFRPRVGVLLNFSPNHLDWHADLDEYLD 208
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +LF L L+P + L E + G + + F A + F P
Sbjct: 209 AKLNLFKAQRPGDLALVP---EELRETLAGRTLSKGEVVWF--------APSGRFHCP-- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
++ G HN N A L+ GV E + E PHR+QI+
Sbjct: 256 -----------RLAGLHNRQNMEAAYLAC--QPFGVTEETAKAAFESFAPAPHRLQIIG- 301
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV---LIWKTLVNNGL 321
+ +GV +VDDSKAT + A L +L GG K G L+ + + GL
Sbjct: 302 EKRGVLFVDDSKATTVAAMEAALKSFD-RPVRLLCGGVWKGGDLAALLPLLKGKVASVGL 360
Query: 322 --------------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
+P F K AV A GD I+LSP ASFD + +++ RG
Sbjct: 361 FGASREIFEAAWAGQVPLFYEPTQKAAVTRLFAEAVPGDVILLSPATASFDLYDSYKARG 420
Query: 368 MVFQEL 373
FQE+
Sbjct: 421 RDFQEI 426
>gi|434382206|ref|YP_006703989.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
pilosicoli WesB]
gi|404430855|emb|CCG56901.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
pilosicoli WesB]
Length = 463
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 192/378 (50%), Gaps = 56/378 (14%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V+ E++FA +IP ++VTGT+GK+T V + +++ +A + GN+GN S+
Sbjct: 108 KVIGEIEFAYNLIPDR-NYISVTGTDGKTTTVNLIYSIISSYK-KARLLGNVGNTFSKEV 165
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
S K + V+E+SS+Q+E + F +SV+LN+ DHL+R+K +++Y K
Sbjct: 166 -------ESIEKDEDIVLELSSFQLETVDN-FHSHISVILNIAEDHLDRYKDIEDYFNAK 217
Query: 147 CHLFSHMVNTKLGLL----PFGNQHLNEAIKGH--RFN-LAWIGAFPGVKIDTEAKTASF 199
++ + + +L + N++ NE IK FN L + + + ++
Sbjct: 218 KNITKNQNSNDFLILNYDNSYTNRYYNELIKTKDISFNVLTFSTKYREANLYYNSEDECL 277
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
A + S + K++G HN N + L+ + +I + E ++ + ++ HR+
Sbjct: 278 YYNAEKIFS---IAKRKLLGMHNIENILASVLACIKDNIPI--EYIDKAVNNFQSIEHRL 332
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGL-----------------MDLKGHKCVI----- 297
+ V ++I GV +++DSKAT++ A + L +D K K +I
Sbjct: 333 EFV-KEIDGVRYINDSKATSMSAVMSALKSFDKNIILIMGGRNKGIDFKPLKSIIEERVK 391
Query: 298 --LLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
+L G+A S ++ V+N + I F +A ++A+++A GD ++LSPGCA
Sbjct: 392 KLILTGEASEDLSSMID----VSNKIIIKDFT-----EAFDYAKKIALKGDTVLLSPGCA 442
Query: 356 SFDEFRNFEHRGMVFQEL 373
SFD F+N+E RG F+ L
Sbjct: 443 SFDSFKNYEERGKYFKSL 460
>gi|150390641|ref|YP_001320690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Alkaliphilus
metalliredigens QYMF]
gi|167017285|sp|A6TS63.1|MURD_ALKMQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|149950503|gb|ABR49031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
metalliredigens QYMF]
Length = 455
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 194/394 (49%), Gaps = 60/394 (15%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
Q+KA G+ ++ E++ A + + R KI+A+TGTNGK+T G++ G
Sbjct: 89 QIKAQGI--------EIIGEVELAFR-LSRG-KIVAITGTNGKTTTTALTGEIFKGAGKN 138
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
+V GN+G P E A + V V+EVSS+Q+E K F P V +LNLTPD
Sbjct: 139 TYVVGNIGVPFIEKALDT-------TEEDVIVIEVSSFQLE-SIKEFHPKVGTLLNLTPD 190
Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--------HRFNLAWIG 183
HL RHKT++NY K +LF + +L + + EA K R + G
Sbjct: 191 HLNRHKTIENYREAKLNLFMNQSLQDYAVLNYDDITSREAGKTLAAQKIYFSRKQILEEG 250
Query: 184 AFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
F ++ T + K ++V + + +K++G+HN NA A + + +GV
Sbjct: 251 VFVDNQLITIQTKEKRYDV--------IHIDEIKILGQHNLENALAA--TAMTFILGVSA 300
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302
E + + HR++ V +I+GV +++DSK TN +A+ + + ++L GGQ
Sbjct: 301 EDIAKGLRNFPGVAHRLEFVE-EIEGVKYINDSKGTNTDASIKAIEAAQA-PIILLAGGQ 358
Query: 303 AK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 342
K +G + I++T ++N + V ++++AV A+ +A
Sbjct: 359 DKGGDFTDFVKAFDGKVKHLLVYGETSDNIYETALHNNFKVVS-QVRDLEEAVIRAKGIA 417
Query: 343 TNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
GD I+LSP CAS+D + NFE RG F++L S
Sbjct: 418 QAGDTILLSPACASWDMYPNFEARGQHFKKLVSS 451
>gi|445062049|ref|ZP_21374491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hampsonii 30599]
gi|444506568|gb|ELV06888.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hampsonii 30599]
Length = 471
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 181/372 (48%), Gaps = 42/372 (11%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+++ E++FA +P +AVTGT+GK+T VT V ++++ +A + GN+GN S+
Sbjct: 111 KIIGEIEFAYNFLPNR-NYIAVTGTDGKTTTVTLVHKIISSYK-KARLLGNVGNTFSKE- 167
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
I S ++E+SS+Q+E K F ++ VLN+ DHL+R+K +++Y TK
Sbjct: 168 ---IETIESDEDI---ILELSSFQLETVEK-FHAHIAAVLNIAEDHLDRYKDIEDYFNTK 220
Query: 147 CHLFSHMVNTKLGLLPFGN-------QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
++ + +L + N LN K + F + + E +
Sbjct: 221 KNIAINQNKNDFLILNYDNIYTNIWYNELNYNCKMKLLTFSLKSKFATIYYNEEDDCIYY 280
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E + + N KV+G+HN N A L L DI D + + R HR+
Sbjct: 281 ENQKL-----FSIANRKVIGKHNIANILAAVLICLKDDIPAD--HIEKAVNNFRGIEHRL 333
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLIW--- 313
++V +I GV +++DSKAT++ + + L ++++GG+ K F +I
Sbjct: 334 ELV-AEINGVKYINDSKATSMNSVMSALKSF-DKDIILIMGGRNKNIDFTSLNNIIESRV 391
Query: 314 KTLVNNGLSIPCF----------AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
K L+ G + + + DA N+A ++ NGD ++LSPGC+SFD F+N+
Sbjct: 392 KKLILIGEAADTLNEMIHFENKIIIKDFTDAFNYASAISINGDTVLLSPGCSSFDMFKNY 451
Query: 364 EHRGMVFQELAF 375
E RG F+ L +
Sbjct: 452 EERGKYFKSLVY 463
>gi|153952827|ref|YP_001393592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
kluyveri DSM 555]
gi|219853492|ref|YP_002470614.1| hypothetical protein CKR_0149 [Clostridium kluyveri NBRC 12016]
gi|189082874|sp|A5N4L3.1|MURD_CLOK5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|254766045|sp|B9DY75.1|MURD_CLOK1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|146345708|gb|EDK32244.1| MurD [Clostridium kluyveri DSM 555]
gi|219567216|dbj|BAH05200.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 458
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 187/380 (49%), Gaps = 53/380 (13%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ + P KI VTG++GK+T T + +L G ++++GGN+G PL
Sbjct: 99 EKGAYITSEMEEFIRYCP--AKIYGVTGSDGKTTTTTLMYNILKKQGYKSWIGGNIGTPL 156
Query: 83 -SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE + P +V V+E+SS+Q+ N P V+V+ N++P+HL+ HK M+
Sbjct: 157 FSE-------VEEITPDDRV-VIELSSFQLMTMN--ISPEVAVITNVSPNHLDIHKDMEE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y + K ++F + N+ L +L N+ L ++ G L + F + + + +
Sbjct: 207 YIMAKKNIFKYQSNSDLLVLNKDNE-LTNSMTGEA--LGKVRQFSIKEKLNKGGYLNKDS 263
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ +L +K+ G HN N +AA L D V++E++ HR +
Sbjct: 264 LCIDGDEVCKLSEIKLKGMHNVENL-LAAFCALKDD--VNIESMREIATTFSGVEHRCEF 320
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------AKFGYSGVL 311
V R+I GV + +DS A++ T GL K VIL+ G A+ GYS +
Sbjct: 321 V-REINGVKYYNDSIASSPTRTLAGLKAF--EKPVILIAGGYDKKIPFDILAEEGYSKI- 376
Query: 312 IWKTLVNNGLS------------------IPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
KTLV G + IP ++ +AVN AR+++ GD + LSP
Sbjct: 377 --KTLVLMGATKYKIKEAFENLELKKHVHIPIIMANSLVEAVNSARKVSCRGDVVTLSPA 434
Query: 354 CASFDEFRNFEHRGMVFQEL 373
CASFD F NFE RG +F+E+
Sbjct: 435 CASFDMFANFEIRGNMFKEI 454
>gi|378952681|ref|YP_005210169.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens F113]
gi|359762695|gb|AEV64774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens F113]
Length = 448
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 171/362 (47%), Gaps = 60/362 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + + V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTD-HLGAEVATVLNVSEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMK 216
Q L E + F L + F G + E K +FE + + + +K
Sbjct: 216 RQDALTRPLLGEGMPCWSFGLG-VPDFKGFGLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN A A LG +G+ +A+ S + HR Q V RD+ GV W +DSK
Sbjct: 270 IRGAHN--QANALAALALGHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVAWYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLI 312
ATN+ A + D++G K V++ GG K G LI
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGADFKDLRDPVAANCRAVVLMGRDRELI 385
Query: 313 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+ L G ++P V ++ +AV R +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 386 AQAL---GDAVPLVRVGSLDEAVQQCRALAHPGDAVLLSPACASFDMFKNYEERGQLFAR 442
Query: 373 LA 374
A
Sbjct: 443 AA 444
>gi|424807602|ref|ZP_18233010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
SX-4]
gi|342325544|gb|EGU21324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
SX-4]
Length = 408
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 185/412 (44%), Gaps = 75/412 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 29 WNLEWLLSADLVVTNPGIALATPEIQQVLATGIPVVGDIELFAWHVDK--PVIAITGSNG 86
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 87 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 137
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 138 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 181
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHN--------------MKVMG 219
N + FP + T E PA V++ Q H + ++G
Sbjct: 182 ----NADDVQTFPDHAAHLQVVTFGVEQPAQFSVAEHQGHEYLFARDNAVLASSELSLVG 237
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 238 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 292
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA-------- 329
TN+ +T L LK + LL G G + L + CF V
Sbjct: 293 TNVASTLAALSGLKVEGQLYLLVGGVGKGADFTPLAPVFATLPLQLCCFGVDGDKFMPLH 352
Query: 330 -------NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ V R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 353 PSARFYDSMESIVRSIRPELKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 404
>gi|296125387|ref|YP_003632639.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
murdochii DSM 12563]
gi|296017203|gb|ADG70440.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
murdochii DSM 12563]
Length = 471
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 185/376 (49%), Gaps = 42/376 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G +++ E++FA ++P +AVTGT+GK+T VT + ++++ +A + GN+GN
Sbjct: 107 RRGIKIIGEIEFAYNLLPNR-NYIAVTGTDGKTTTVTLIYKIISSYK-KARLVGNVGNTF 164
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
S+ L + +P + V+E+SS+Q+E K F ++ +LN+ DHL+R+K ++ Y
Sbjct: 165 SKE------LETIEPDEDI-VLELSSFQLETVEK-FHAHIAAILNIAEDHLDRYKDIEEY 216
Query: 143 ALTKCHLFSHMVNTKLGLLPFGN-------QHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
K ++ + +L + N LN K + F + + E +
Sbjct: 217 FNAKKNISINQNKNDFLILNYDNIYTNIWYNELNNNCKMKLLTFSLKSKFADIYYNEEDE 276
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+E + + K++G+HN N A L L +I E + + +
Sbjct: 277 YIYYENEKL-----FSIKERKILGKHNVANILAAVLVCLKDNIPA--EHIEHVVNNFKGI 329
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLI 312
HR+++V +I GV +++DSKAT++ A + L ++++GG+ K F LI
Sbjct: 330 EHRVELV-AEINGVKYINDSKATSMNAVMSALKSF-DKDIILIMGGRNKNIDFTSLNNLI 387
Query: 313 W---KTLVNNGLSIPCFA----------VANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
K L+ G + + + DA N+A ++ NGD ++LSPGCASFD
Sbjct: 388 ESRVKKLILIGEAAEALDDMIHFENKIIIKDFTDAFNYASAISINGDTVLLSPGCASFDM 447
Query: 360 FRNFEHRGMVFQELAF 375
F+N+E RG F+ L +
Sbjct: 448 FKNYEERGKYFKSLVY 463
>gi|429331489|ref|ZP_19212243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida CSV86]
gi|428763821|gb|EKX85982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida CSV86]
Length = 448
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/361 (31%), Positives = 172/361 (47%), Gaps = 58/361 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLGDDVELYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 ---LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKV 217
LP Q N AF G++ + K +FE + + + +K+
Sbjct: 221 SRPLPVEGQ----PCWTFGLNTPDFKAF-GLREENGEKYLAFEFRNL-----MPVRELKI 270
Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
G HN NA A G +G+ EA+ ++ HR Q V R++ GV + DDSKA
Sbjct: 271 RGAHNQSNALAALAL--GHAVGLPFEAMLESLRSFAGLAHRCQWV-RELNGVNYYDDSKA 327
Query: 278 TNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIW 313
TN+ A + D+ G K V++ GG K G L+
Sbjct: 328 TNVGAALAAIEGLGADIDG-KLVLIAGGDGKGADFSALRAPVGEHCRAVVLLGRDAELLA 386
Query: 314 KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ L G S+P V ++DAV A +A +GDA++LSP CAS D F+NFE RG +F +
Sbjct: 387 EAL---GDSVPLVRVKTLEDAVQKAAELARSGDAVLLSPACASLDMFKNFEERGRLFAQA 443
Query: 374 A 374
A
Sbjct: 444 A 444
>gi|145633134|ref|ZP_01788866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 3655]
gi|145635587|ref|ZP_01791285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittAA]
gi|229844909|ref|ZP_04465047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 6P18H1]
gi|144986360|gb|EDJ92939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 3655]
gi|145267149|gb|EDK07155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittAA]
gi|229812290|gb|EEP47981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 6P18H1]
Length = 437
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 187/404 (46%), Gaps = 66/404 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA +L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTVLKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ +LN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATILNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+ H+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRAALRHFKGLDHRFQLAHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVAN 330
K +LLGG K FG G L+ K S +
Sbjct: 336 IEGKLHLLLGGDGKGANFSELAELINQPHIICYCFGRDGALLAK------FSSQSYLFET 389
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 390 MEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|435854480|ref|YP_007315799.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halobacteroides
halobius DSM 5150]
gi|433670891|gb|AGB41706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halobacteroides
halobius DSM 5150]
Length = 454
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 182/379 (48%), Gaps = 54/379 (14%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V+SE++ A + + +ILA+TG+NGK+T G++ + VGGN+G L
Sbjct: 92 AGIEVISEVELAYRYT--TAQILAITGSNGKTTTTMLTGEIFKETDFKTIVGGNIGRALI 149
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ + K +A+ E+SS+Q+E K F P +S+VLNLTPDHL+RH T +NYA
Sbjct: 150 KDLPYL-------SKEDLAIAEISSFQLE-GTKEFRPKISLVLNLTPDHLDRHGTFENYA 201
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF-PGVKIDTEA 194
K + + +L + +Q + + + + G F KI +
Sbjct: 202 AAKKKIVVNQRKEDYAILNYDDQDVRQFANSTAAEVVFFSQQEELEKGVFVTDNKIVSNL 261
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA-ALSVLGLDIGVDVEALNSTIEILR 253
K + E+ + + + + G HN NA A A+S+L +GV + L +
Sbjct: 262 KGQTEEI--------ISIEQLGLKGPHNLENALGAIAMSLL---MGVSKDKLVKVLSEFT 310
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
+ HR++ V I+GV +V+DSK TN A L +++ GG K
Sbjct: 311 SVEHRIEGVAT-IKGVKYVNDSKGTNPAAAIKALETF-NEPIILIAGGMNKESDFTDFAK 368
Query: 305 -----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
G + I + G + + V+ +++A + A ++A+ GD ++LSP
Sbjct: 369 IAANKIKGLVLLGETADEIEDKVKEFGFT-DTYQVSGIEEATHQASQLASQGDIVLLSPA 427
Query: 354 CASFDEFRNFEHRGMVFQE 372
CAS+D F +++HRG +F++
Sbjct: 428 CASWDMFSSYKHRGKMFKK 446
>gi|110639124|ref|YP_679333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
hutchinsonii ATCC 33406]
gi|118595652|sp|Q11RH3.1|MURD_CYTH3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|110281805|gb|ABG59991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
hutchinsonii ATCC 33406]
Length = 450
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 190/389 (48%), Gaps = 49/389 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + V+SE++FA + I K +A+TG+NGK+T +L LG
Sbjct: 76 KAPIMKLIRSKAIEVISEIEFAYRHIHPGAKFIAITGSNGKTTTTLLTHHILAQLGYSVG 135
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+GGN+G L+ H K V V+E+SS+Q++ + Y F V+V+LN+TPDH
Sbjct: 136 LGGNIGTSLARQIIH--------EKKDVYVLELSSFQLD--DMYTFKADVAVLLNITPDH 185
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------- 182
L+R++ +NY +K +F ++ + + + K H + ++
Sbjct: 186 LDRYEYKFENYTASKFRIFQNLTPADYYITYSEDSVIESYKKDHPVDARYVPVSLKQLYS 245
Query: 183 -GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241
GA+ ++ KT VV+ + G+HNY N +AAL+ + IG D
Sbjct: 246 AGAY------SDEKTIQIHALDDTVVT-CNTEEFPLQGKHNYIN-IMAALNA-AVSIGAD 296
Query: 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
+ ++I+ R PHR++ V I GV +V+DSKATN+++ L +K +I+ G
Sbjct: 297 IHKSIASIKSFRNAPHRLEFVGS-IYGVKFVNDSKATNVDSVWYALDSMKTPVVLIVGGV 355
Query: 302 QAKFGYSGV--LIWK---TLV----NNGLSIPCFA--------VANMKDAVNHARRMATN 344
YS + L+ + T+V +N + FA +M +A+ A A
Sbjct: 356 DKGNDYSQIEALVKEKVHTVVALGKDNSKVLSGFASMVSEIKEAHSMVEAIRIAHDSAKK 415
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
GD ++LSP CASFD F+N+E RG F+ L
Sbjct: 416 GDTVLLSPACASFDLFKNYEDRGTQFRNL 444
>gi|393719279|ref|ZP_10339206.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
echinoides ATCC 14820]
Length = 377
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 181/373 (48%), Gaps = 60/373 (16%)
Query: 24 SGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+G ++ +++ AQ P K++ VTGTNGKST V+ + +L G+ + +GGN+G P
Sbjct: 37 AGVPIIGDIELFAQARPALPPHKVVGVTGTNGKSTTVSLIDHILQTAGVPSRLGGNIGLP 96
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ E P V V+E+SSYQ+++ C V+V+LN+TPDHL+R+
Sbjct: 97 ILEQ--------EPLPDGGVYVLELSSYQIDLTQTLDC-DVAVLLNITPDHLDRYDGFDA 147
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
YA +K LF+ T ++ G+ + ++ +L I PGV +D
Sbjct: 148 YAASKARLFAMQSATHAAIIGIGDTPSAQIARSLSARAEHLTKIA--PGVCMD------- 198
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
Q + G HN NA A L GV +++ ++ HR
Sbjct: 199 ------------QSRWPSLQGPHNAQNALAAIAVAQAL--GVPEAVIDAALQSFVGLAHR 244
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------FGYS 308
M+ V R ++GVT+V+DSKATN E+T L + +LGG+AK FG+
Sbjct: 245 MERV-RVLRGVTYVNDSKATNPESTAPALAAFG--RIHWILGGKAKADDLDACAPQFGH- 300
Query: 309 GVLIWKTLVNNGL--------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
V+ T+ +G ++P ++ AV A R A GD ++LSP CASFD+F
Sbjct: 301 -VVRAYTIGQSGPRFAEILQGTVPVEQSGDLATAVAAAARNAQPGDTVLLSPACASFDQF 359
Query: 361 RNFEHRGMVFQEL 373
R+FE RG F+ L
Sbjct: 360 RDFEDRGEQFRRL 372
>gi|330811581|ref|YP_004356043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|423699137|ref|ZP_17673627.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
fluorescens Q8r1-96]
gi|327379689|gb|AEA71039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|387997119|gb|EIK58449.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
fluorescens Q8r1-96]
Length = 448
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 170/362 (46%), Gaps = 60/362 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + + V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTD-HLGAEVATVLNVSEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMK 216
Q L E + F L + F G + E K +FE + + + +K
Sbjct: 216 RQDALTRPLLGEGMPCWSFGLG-VPDFKGFGLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN A A LG +G+ +A+ S + HR Q V RD+ GV W +DSK
Sbjct: 270 IRGAHN--QANALAALALGHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVAWYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLI 312
ATN+ A + D++G K V++ GG K G LI
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGADFKDLRDPVAANCRAVVLMGRDRELI 385
Query: 313 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+ L G ++P V ++ +AV R +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 386 AQAL---GDAVPLVRVGSLDEAVQQCRALAHPGDAVLLSPACASFDMFKNYEERGQLFAR 442
Query: 373 LA 374
A
Sbjct: 443 AA 444
>gi|423015706|ref|ZP_17006427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
xylosoxidans AXX-A]
gi|338781209|gb|EGP45602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Achromobacter
xylosoxidans AXX-A]
Length = 510
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 128/395 (32%), Positives = 178/395 (45%), Gaps = 64/395 (16%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R ++EL + PR +LAVTGTNGK+TV ++ G+ GN+ +P + A
Sbjct: 118 RALAELAETREYRPR---VLAVTGTNGKTTVTALTRDLVQASGLSVLAAGNI-SPAALTA 173
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
P QV V+E+SS+Q+E + +VVLN+T DHL+ H M YA K
Sbjct: 174 LMGALDADDLP--QVWVLELSSFQLETTHTLMA-DAAVVLNVTQDHLDWHGGMDAYAHAK 230
Query: 147 CHLFS----HMVNTK----------LGLLP---FGNQHLNEAIKGHRF-----NLAWIGA 184
L +VN L +P FG A+ G +AW+ A
Sbjct: 231 ARLLKMARIAIVNRDDPYTVDMVPSLDAMPVRSFGRDV--PALVGDMGLELGQGVAWLVA 288
Query: 185 FPGVKIDT------EAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLD 237
V D K A V A G +S+L + +++ G HN NA A LD
Sbjct: 289 AEPVDFDEPVAPVRRKKDAPEPVRAKGRMSRLMPVDALRIRGIHNALNALAALQLARCLD 348
Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
+G A+ T+ PHR V R+I GV +++DSK TN+ AT L + G V+
Sbjct: 349 LGWG--AMLRTLREYAGEPHRAAFV-RNIGGVDYINDSKGTNVGATVAALEGM-GQPVVL 404
Query: 298 LLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNH 337
+ GGQ K G G I + L G + C AV +++DAV
Sbjct: 405 IAGGQGKGQDFSPLVPVVSRHARAVLLIGQDGPEIGRVLAATG--VDCIAVESLRDAVRR 462
Query: 338 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
A +A GD ++LSP CAS D FRN+ HRG VF E
Sbjct: 463 AAELAQAGDVVLLSPACASLDMFRNYPHRGQVFVE 497
>gi|258620874|ref|ZP_05715908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM573]
gi|258586262|gb|EEW10977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM573]
Length = 440
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/412 (28%), Positives = 185/412 (44%), Gaps = 75/412 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATPEIQQVLATGIPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 213
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHN--------------MKVMG 219
N + FP + T E PA V++ Q H + ++G
Sbjct: 214 ----NADDVQTFPDHAAHLQVVTFGVEQPAQFSVAEHQGHEYLFARDNAVLASSELSLVG 269
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 324
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA-------- 329
TN+ +T L LK + LL G G + L + CF V
Sbjct: 325 TNVASTLAALSGLKVEGQLYLLVGGVGKGADFTPLAPVFATLPLQLCCFGVDGDKFMPLH 384
Query: 330 -------NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ V R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 385 PSARFYDSMESIVRSIRPELKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|145641278|ref|ZP_01796858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae R3021]
gi|145274115|gb|EDK13981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 22.4-21]
Length = 437
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 186/404 (46%), Gaps = 66/404 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTLEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+ H+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLAHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVAN 330
K +LLGG K FG G L+ K S +
Sbjct: 336 IEGKLHLLLGGDGKGADFSELAELINQPHIICYCFGRDGALLAK------FSSQSYLFET 389
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 390 MEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|255527653|ref|ZP_05394513.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
carboxidivorans P7]
gi|296186918|ref|ZP_06855319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
carboxidivorans P7]
gi|255508666|gb|EET85046.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
carboxidivorans P7]
gi|296048632|gb|EFG88065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
carboxidivorans P7]
Length = 458
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 120/379 (31%), Positives = 180/379 (47%), Gaps = 51/379 (13%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ + P K+ VTG++GK+T T + +L G + +VGGN+G PL
Sbjct: 99 KQGAYITSEMEEFIKYCP--AKVYGVTGSDGKTTTTTLIYNILKQQGYKTWVGGNIGTPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
F I S K V+E+SS+Q+ N P V+VV NL+P+HL+ HK M+ Y
Sbjct: 157 ----FTEIEKMKSDDK---VVLELSSFQLMTMN--VSPEVAVVTNLSPNHLDIHKDMQEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-ASFEV 201
+K ++F + + L +L N N FN A G I + K A FE
Sbjct: 208 IDSKKNIFKYQQSESLLILNRDNNLTN-----SMFNEAK-GRVLEFSIKEKVKDGAYFEE 261
Query: 202 PAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ + + +L+ +++ G HN N +AA + D V++E + T HR
Sbjct: 262 NKLYIKEKEVCKLNEIQIKGMHNVENL-LAAFCAVSDD--VNIENMRKTAISFTGVEHRC 318
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------AKFGYSG 309
+ + R+I GV + +DS AT+ T GL K VIL+ G A+ GY
Sbjct: 319 EFI-REIDGVKYYNDSIATSPSRTLAGLKAF--EKPVILIAGGYDKKIPLDVLAEEGYEN 375
Query: 310 V--LIW-------------KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
+ LI K + + IP +++ A++ AR A GD I LSP C
Sbjct: 376 IKALILVGATKDKIKDAFSKVMKKKNIEIPMVIEESLEKALSSARGFAKEGDIITLSPAC 435
Query: 355 ASFDEFRNFEHRGMVFQEL 373
ASFD F NFE RG F+EL
Sbjct: 436 ASFDMFPNFEARGNKFKEL 454
>gi|320106152|ref|YP_004181742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Terriglobus
saanensis SP1PR4]
gi|319924673|gb|ADV81748.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
saanensis SP1PR4]
Length = 452
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 178/367 (48%), Gaps = 36/367 (9%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ A++ + S+ +A+TG+NGK+T + +G++L G+ VGGN+G P+ E
Sbjct: 92 GVEMIGEVELASRFLNGSV--VAITGSNGKTTTTSLIGEILRGAGVPTLVGGNIGLPVVE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ + +V+E+SS+Q+E + F P ++VVLN+TPDHL+RH T + YA
Sbjct: 150 -------MVAESTDTTWSVLEISSFQLET-VETFAPKIAVVLNITPDHLDRHGTFEKYAE 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE-VPA 203
K + +L ++ + + W +K S +P
Sbjct: 202 AKTRITEMQTPADFLVLNAEDKPTQMVAAKTKAQIFWFSPRRPIKQGAFVHGDSILFLPR 261
Query: 204 VGVVSQ--LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
G ++ + + + ++G HN N AAV A + GV E + + + HR+
Sbjct: 262 EGGKAEPVMPVSEIPLVGAHNVENVLAAVCACRL----AGVSSEKIREGVRGFKAVDHRL 317
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV--LIWKTLV 317
Q V ++ GV + +DSKATN++AT L +G+ +IL G Y+ + L+ + +V
Sbjct: 318 QFVA-EVAGVKYYNDSKATNVDATAKALASFEGNVLLILGGKDKGSDYTELNDLLRERVV 376
Query: 318 N--------NGLSIPCFAVANMK------DAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
+ V +K AV A A GD ++L+P CASFD+F ++
Sbjct: 377 TVYTIGSAAEKIETQLAGVMTLKHAETLERAVALATEDAKAGDTVLLAPACASFDQFESY 436
Query: 364 EHRGMVF 370
EHRG F
Sbjct: 437 EHRGREF 443
>gi|429740559|ref|ZP_19274243.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
catoniae F0037]
gi|429160767|gb|EKY03217.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
catoniae F0037]
Length = 459
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 110/388 (28%), Positives = 194/388 (50%), Gaps = 47/388 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + + G V+SE++ A + + K++ +TG+NGK+T ++ +L+ G+
Sbjct: 79 KAPIMQAIREQGIPVISEIELAGRYLKG--KVIGITGSNGKTTTTMWLHHILSEAGLRVG 136
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+G L+ + ++P++ VVE+SS+Q++ + Y F +++++N+TPDH
Sbjct: 137 LAGNVGFSLARQV-----ITDNQPEY--FVVELSSFQLD--DMYQFRVHIALLMNITPDH 187
Query: 133 LER-HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR---FNLAWIGAFPGV 188
L+R H + YAL K + + + ++ ++ + H+ +L +P V
Sbjct: 188 LDRYHYNFEEYALAKMRILQNQTEEDAFIYWGEDEFVSRYVMMHQPMPMHLLPFLTYPQV 247
Query: 189 -----KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVE 243
K D FE G + + + + G HN NA A S+ L IGV +
Sbjct: 248 GSAADKSDDNMMRLHFE----GKSFEFPIDQLALQGPHNLQNAMAA--SIAALHIGVSED 301
Query: 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303
L +E PHR++ V + GV +++DSKATN+ +T L + V++LGG+
Sbjct: 302 VLTRALEDFVNVPHRLEKVGV-LDGVRYINDSKATNISSTYYALRTMTT-PYVLILGGED 359
Query: 304 K------------FGYSGVLIWKTLV------NNGLSIPCFAVANMKDAVNHARRMATNG 345
K G G++ T V +G + +M++A+ HAR+MA G
Sbjct: 360 KGNDYLDITEQIVSGARGLIFLTTDVLKLYKAFHGKVKHIASALSMEEAIAHARQMAQPG 419
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQEL 373
D ++LSP CASFD F ++ HRG F+E+
Sbjct: 420 DTVLLSPACASFDLFTSYIHRGDCFREI 447
>gi|323491031|ref|ZP_08096223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
brasiliensis LMG 20546]
gi|323314695|gb|EGA67767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
brasiliensis LMG 20546]
Length = 441
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 112/353 (31%), Positives = 168/353 (47%), Gaps = 50/353 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV + GQ+ G++ VGGN+G P + + V+
Sbjct: 112 VIAITGSNGKSTVTDWTGQVAKATGLKVGVGGNIGVPALDLLTLDAD---------LYVL 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT--KL 158
E+SS+Q+E + P + LNLT DH++R++ M++Y K +F H +VN K
Sbjct: 163 ELSSFQLETTSS-LAPKAAAFLNLTEDHMDRYQGMEDYRQAKLRIFDHAQSCIVNAEDKQ 221
Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
N+HL E F+L F + D E A+ + + ++
Sbjct: 222 TYPDQNNKHLVE------FSLTDSTQFSVIDCD------GIEYLAMNGKQIIPAAELSLV 269
Query: 219 GRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
GRHN NA V A LS +G+DI ++AL S + HR Q+V D +G+ WV+DSK
Sbjct: 270 GRHNVANALVVLALLSQVGVDIEKGLDALKSYNGL----THRCQVV-ADNRGIKWVNDSK 324
Query: 277 ATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA--------- 327
ATN+ +T L L+ + LL G G + L L + CF
Sbjct: 325 ATNVASTMAALAGLELAGTLYLLVGGMGKGADFSQLAPVLDKLDLQLCCFGEDGDQFMSL 384
Query: 328 ------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
++M++ + T GD ++LSP CASFD+F NF RG F ELA
Sbjct: 385 HPSAQRFSSMEEIIQWLSPKVTAGDMVLLSPACASFDQFSNFMARGDAFTELA 437
>gi|145630236|ref|ZP_01786018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae R3021]
gi|144984517|gb|EDJ91940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae R3021]
Length = 437
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 186/404 (46%), Gaps = 66/404 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+ H+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLAHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVAN 330
K +LLGG K FG G L+ K S +
Sbjct: 336 IEGKLHLLLGGDGKGADFSELAELINQPHIICYCFGRDGALLAK------FSSQSYLFET 389
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 390 MEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|311103999|ref|YP_003976852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
xylosoxidans A8]
gi|310758688|gb|ADP14137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
xylosoxidans A8]
Length = 510
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 180/397 (45%), Gaps = 68/397 (17%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R +++L + PR +L VTGTNGK+TV Q++ G+ GN+ +P + AA
Sbjct: 118 RALADLAETREYRPR---LLTVTGTNGKTTVTALTRQLIEASGLSVVAAGNI-SPAALAA 173
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
S P QV V+E+SS+Q+E + VVLN+T DHL+ H +M+ YA K
Sbjct: 174 LMDALDAESLP--QVWVLELSSFQLETTHSLMA-DAGVVLNVTQDHLDWHGSMEAYAQAK 230
Query: 147 CHLFS---------------HMVNT--KLGLLPFGNQHLNEAIKGHRFNL----AWIGAF 185
L MV T L + FG + + E + L AW+ A
Sbjct: 231 ARLLKMARVAIVNRDDPYTVDMVATLNALNVRSFG-RDVPELVGDMGLELGQGVAWLVAC 289
Query: 186 PGVKIDTEA------KTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDI 238
D A K A V A G +S+L + +++ G HN NA A LD+
Sbjct: 290 EPNDFDEPAPPVRRKKDAPEPVRAKGRMSRLMPVDALRIRGIHNALNALAALQLARCLDL 349
Query: 239 GVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
G + + LR PHR V R I GV +++DSK TN+ AT L L G +
Sbjct: 350 G-----WGAMLRALREYAGEPHRAAFV-RTIGGVDYINDSKGTNVGATVAALEGL-GQQV 402
Query: 296 VILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 335
V++ GGQ K G G I + L + G + C ++DAV
Sbjct: 403 VLIAGGQGKGQDFAPLIPGVTQHARAVMLIGQDGPEIGRVLASTG--VQCVMAETLRDAV 460
Query: 336 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
A +A GDA++LSP CAS D FRN+ HRG VF E
Sbjct: 461 RGAAELAQPGDAVLLSPACASLDMFRNYPHRGQVFVE 497
>gi|145627896|ref|ZP_01783697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 22.1-21]
gi|145639344|ref|ZP_01794950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittII]
gi|144979671|gb|EDJ89330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 22.1-21]
gi|145271647|gb|EDK11558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittII]
gi|309751218|gb|ADO81202.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
influenzae R2866]
Length = 437
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 187/404 (46%), Gaps = 66/404 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRTATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYSL 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
V+V LN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 171 KAAAVTV-LNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVAN 330
K +LLGG K FG G + K S +
Sbjct: 336 IEGKLHLLLGGDGKGADFSELAELINQPHIICYCFGRDGAQLAK------FSSQSYLFET 389
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 390 MEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|300869645|ref|YP_003784516.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
gi|300687344|gb|ADK30015.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
Length = 465
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 189/381 (49%), Gaps = 62/381 (16%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V+ E++FA +IP ++VTGT+GK+T V + +++ +A + GN+GN S+
Sbjct: 110 KVIGEIEFAYNLIPDR-NYISVTGTDGKTTTVNLIYSIISSYK-KARLLGNVGNTFSKEV 167
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
S K + V+E+SS+Q+E + F +SV+LN+ DHL+R+K +++Y K
Sbjct: 168 -------ESIEKDEDIVLELSSFQLETVDN-FHSHISVILNIAEDHLDRYKDIEDYFNAK 219
Query: 147 CHLFSHMVNTKLGLL----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--- 199
++ + + +L + N + NE IK +F + T+ K A+
Sbjct: 220 KNITKNQNSNDFLILNYDNSYTNSYYNELIKTKDI------SFNVLTFSTKNKEANLYYN 273
Query: 200 ---EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
E + K++G HN N + L+ + +I + E ++ + ++
Sbjct: 274 SEDECLYYNGEKIFSIAKRKLLGMHNIENILASVLACIKDNIPI--EYIDKAVNNFKSIE 331
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGL-----------------MDLKGHKCVI-- 297
HR++ V ++I GV +++DSKAT++ A + L +D K K +I
Sbjct: 332 HRLEFV-KEIDGVRYINDSKATSMSAVMSALKSFDKNIILIMGGRNKGIDFKPLKSIIEE 390
Query: 298 -----LLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
+L G+A S ++ V+N + I F +A ++A+++A GD ++LSP
Sbjct: 391 RVKKLILTGEASEDLSSMID----VSNKIIIKDFT-----EAFDYAKKIAVKGDTVLLSP 441
Query: 353 GCASFDEFRNFEHRGMVFQEL 373
GCASFD F+N+E RG F+ L
Sbjct: 442 GCASFDSFKNYEERGKYFKSL 462
>gi|337288495|ref|YP_004627967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermodesulfobacterium sp. OPB45]
gi|334902233|gb|AEH23039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermodesulfobacterium geofontis OPF15]
Length = 467
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 180/372 (48%), Gaps = 42/372 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SEL+ A Q + + +A+TGTNGK+T V ++L G + F GGN G PLSE
Sbjct: 94 VLSELEIAWQFLKNKEETIAITGTNGKTTTTAMVSELLKLSGYKVFTGGNYGIPLSELVV 153
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + V+EVSS+Q+E N Y F P V ++LN++PDHLER+ + + YA K
Sbjct: 154 SNVLVDK-------IVLEVSSFQLE--NIYTFSPKVGILLNISPDHLERYNSYEEYAYYK 204
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
LF +LPF K + + + K K ++ + +
Sbjct: 205 YRLFEFQKEDNYAILPFNEPWFERFGKLIKSRILFFDEKENEKATAYLKLSNISSEDLFI 264
Query: 207 VSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
++ K++G HN N VA+L L E++ I+ R PHR++
Sbjct: 265 INLGNKEFYSFSGFKLLGIHNKINFMVASLGARLL--SATKESIERLIKEFRGFPHRLEY 322
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
+ + GV +++DSKATN++AT L L G +++LGG+ K
Sbjct: 323 IG-EFGGVYFINDSKATNVDATLQALKSLPG-PIILILGGKHKGASYAPLISYIKEKVRI 380
Query: 305 ---FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
G S ++ + L NG++ + + A A + A GD ++LSP C+SFD+F
Sbjct: 381 LILMGESRFIMAEEL--NGIT-ETYLSETLSSATLLAIKFAKPGDTVLLSPACSSFDQFN 437
Query: 362 NFEHRGMVFQEL 373
+++ RG VF+++
Sbjct: 438 DYKERGEVFRKI 449
>gi|78484911|ref|YP_390836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
crunogena XCL-2]
gi|118595701|sp|Q31I61.1|MURD_THICR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|78363197|gb|ABB41162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
crunogena XCL-2]
Length = 449
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 184/386 (47%), Gaps = 65/386 (16%)
Query: 20 CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
C+ Q G V+ +++ A+ + I +A+TG+NGKSTV T V + L G VGGN+G
Sbjct: 80 CINQ-GTEVIGDIELFARAAGKPI--VAITGSNGKSTVTTLVAEALKEAGYAVGVGGNIG 136
Query: 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS-VVLNLTPDHLERHKT 138
P A + P+ +F V V+E+SS+Q+E Y T++ VLN++ DH++R+
Sbjct: 137 CP----ALDLLTHPT---EFDVYVLELSSFQLE--TTYSLQTIAATVLNISEDHMDRYLA 187
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP----GVKIDT 192
+++Y K + + NT+L +LP + + A G RF L + A P G+ +
Sbjct: 188 LEDYIQAKMTILN---NTELAVLPLDFERVGIARPGDEVRFGLNYAEALPPKEYGIVMKN 244
Query: 193 EAKTASFE----VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+E VP + Q G H+ NA A+ L +
Sbjct: 245 GQAWLGWEDHASVPVTAMAQQ---------GLHHQLNAL--AMMALCRPFDLSDAVFEKV 293
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAK- 304
++ + PHR Q+V +GV W++DSK TN+ AT T + +K + +++ GG K
Sbjct: 294 LKTFKGLPHRTQVVLEQ-EGVRWINDSKGTNVGATVTAIESIKETLDGQVILIAGGVGKE 352
Query: 305 -------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 345
FG +I + L + + V + +AV A+ +A +G
Sbjct: 353 ADFNELGQAVVQSCRQAILFGQDKAIIAQQLPQEKIQL----VDTLSEAVLLAKTIAKSG 408
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQ 371
DA++ SP CASFD+F+N+ RG F+
Sbjct: 409 DAVLFSPACASFDQFKNYIERGNAFE 434
>gi|395209423|ref|ZP_10398517.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. ACB8]
gi|394705054|gb|EJF12583.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
sp. ACB8]
Length = 448
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 182/376 (48%), Gaps = 54/376 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ E++ A Q + K+ AVTGTNGK+T V+ +G++L + V GN+GNP + A
Sbjct: 91 VIGEIELAYQSLKG--KLCAVTGTNGKTTTVSLIGEILKSQYADTHVVGNIGNPFTAEAL 148
Query: 88 HCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ V EVSS+Q+E I + F P VS + N+TPDHL+RHKTMKNY K
Sbjct: 149 DTEEQSAT-------VCEVSSFQLESIVD--FRPHVSAITNITPDHLDRHKTMKNYIAVK 199
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA----WIGAFPGVKIDTEAKTASFEVP 202
+ + +L + + L + G + NL W + K + F
Sbjct: 200 ESISINQTEEDSIVLNYMDPELRKF--GKKRNLKPKVLWFSSEEEPKEGFFLRDDEFIYK 257
Query: 203 AVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ +L + +++++G+HNY N + + L +GV ++ + + + HR++
Sbjct: 258 SKDKEEKLFKTKDVQLLGKHNYEN--IMCSMAVALKMGVPMDKIIKVCKKFKPVEHRIEF 315
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG------------ 309
V R+ GV + +DSK TN++A L + G V+L+GG GY
Sbjct: 316 V-RERSGVRYYNDSKGTNVDAAIQALRAMPGP--VLLIGG----GYDKHVDFDAWVKEFK 368
Query: 310 ------VLIWKT-------LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
VLI +T +G FA +M +AV A GD ++LSP CAS
Sbjct: 369 GRVKYLVLIGETRNQIAACAKKHGFHNLMFA-EDMDEAVKDCAAYADPGDYVLLSPACAS 427
Query: 357 FDEFRNFEHRGMVFQE 372
+ F+++E RG VF++
Sbjct: 428 WGMFKDYEERGRVFKD 443
>gi|392552613|ref|ZP_10299750.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
spongiae UST010723-006]
Length = 435
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 178/373 (47%), Gaps = 61/373 (16%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ +++ A++ +++ AVTG+NGKS+VVT +L G + + GN+G P+
Sbjct: 93 GVEVIGDVELFARINTKAV--YAVTGSNGKSSVVTLTRDVLKQAGYKVALAGNIGTPV-- 148
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L + V+E+SS+Q+E + C S VLN++ DH++R+ ++ +YA
Sbjct: 149 -------LDVIDQDYDCYVLELSSFQLETTHSLVCEA-SCVLNISEDHMDRYDSLGDYAY 200
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K + H +K ++ F + L PGV + +
Sbjct: 201 AKQRIHLH---SKHVVVNFDDA------------LTHCEQTPGVSFGAQQGDYTISQQCF 245
Query: 205 GVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP------- 255
V + L +KV+G HN NA L+V+ L +E L +++ +T
Sbjct: 246 NVHGKQMLSTDELKVIGLHNQLNA----LAVMAL-----LENLKLPVDVFKTAFNQFSGL 296
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----AKFGYSGVL 311
HR Q+V D GV +V+DSKATN+ AT L L K +ILL G A F V
Sbjct: 297 AHRCQLVCED-NGVLYVNDSKATNVGATQAALTSLAKGKNIILLAGGVGKGADFSPLKVD 355
Query: 312 IW---KTLVNNG--------LSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
I K L+ G L ++ +DAV A+ +A +GD ++L+P CASFD F
Sbjct: 356 IETTVKQLITFGKDKAQIAALCENAIQTSSFEDAVLQAKAIAVSGDIVLLAPACASFDMF 415
Query: 361 RNFEHRGMVFQEL 373
+FEHRG VF EL
Sbjct: 416 NSFEHRGDVFVEL 428
>gi|386393822|ref|ZP_10078603.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio sp.
U5L]
gi|385734700|gb|EIG54898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio sp.
U5L]
Length = 442
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/366 (30%), Positives = 165/366 (45%), Gaps = 55/366 (15%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G +V+SEL+ A+ + I+AVTG+NGK+T V + +L G + F GGN+G PLSE
Sbjct: 99 GAQVVSELELASWFT--AEPIVAVTGSNGKTTTVMLISHLLEAAGRKVFTGGNIGTPLSE 156
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ P V V+EVSS+Q+++ + F P V V+LN +P+HL+ H ++ Y
Sbjct: 157 YVL------AGDPA-DVVVLEVSSFQLQL-VRTFRPRVGVLLNFSPNHLDWHADLEEYLS 208
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +LF L L+P + L R + W A + F P
Sbjct: 209 AKLNLFRAQRPGDLALVPEELRGLLSGRTLSRGEVVWF-----------APSGRFHCP-- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
++ G HN N A L+ GV E + E PHR+QI+
Sbjct: 256 -----------RLAGLHNRQNMEAAFLAA--QPFGVTEEMAKAAFESFAPAPHRLQIIG- 301
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV---LIWKTLVNNGL 321
+ +GV +VDDSKAT + A L +L GG K G L+ + + + GL
Sbjct: 302 EKRGVLFVDDSKATTVAAMEAALKSFD-RPVRLLCGGVWKGGDLAALLPLLKEKVASVGL 360
Query: 322 --------------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
+P F K AV A GD I+LSP ASFD + +++ RG
Sbjct: 361 FGASREIFEAAWAGQVPLFYEPTQKAAVTRLFAEAVPGDVILLSPATASFDLYGSYKARG 420
Query: 368 MVFQEL 373
FQE+
Sbjct: 421 RDFQEI 426
>gi|325954319|ref|YP_004237979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
DSM 16922]
gi|323436937|gb|ADX67401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
DSM 16922]
Length = 443
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 185/365 (50%), Gaps = 33/365 (9%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+SE++FA++ KI+A+TG+NGK+T + + ++ G++ + GN+G ++
Sbjct: 88 EVISEIEFASRFTES--KIIAITGSNGKTTTTSLMYHIMKEAGLDVGLCGNIGKSFAQ-- 143
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALT 145
L + P + V+E+SS+Q++ ++F P ++++LN+TPDHL+R++ YA +
Sbjct: 144 -----LVAEDP-HEYYVIEISSFQLD-DIRFFKPYIAIILNITPDHLDRYENNFDKYAHS 196
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG-AFPGVKIDTEAKTASFEVPAV 204
K + + + + + ++ +NE IK + + K A FE+
Sbjct: 197 KFRITENQTDKEYFVYNVDDEKINELIKELKIKANKTSFSMKDKKQKAYANEKIFEIKDN 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ + ++ ++G+HN N+ AA + L I DV + ++ ++ HR++ V +
Sbjct: 257 DNSFLMPIADLGLIGKHNVSNSLAAATAANILKIRKDV--IKRSLSDFKSVEHRLENVLK 314
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVL--IWKTL------ 316
I G+ +++DSKATN+ AT L +K I+ G YS ++ + K +
Sbjct: 315 -IGGIEFINDSKATNVNATYFALESMKNPVIWIVGGTDKGNDYSELMPFVKKKVKAIVCL 373
Query: 317 -VNNGLSIPCFA--------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
V+N I F+ MKDAV A GD ++LSP CASFD F +++ RG
Sbjct: 374 GVDNHKIIEAFSGVVEKITETKTMKDAVRAAYMYGEKGDTVLLSPACASFDLFTSYQDRG 433
Query: 368 MVFQE 372
F++
Sbjct: 434 NQFKK 438
>gi|388259729|ref|ZP_10136898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellvibrio sp. BR]
gi|387936455|gb|EIK43017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellvibrio sp. BR]
Length = 446
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 170/362 (46%), Gaps = 54/362 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M GI VGGNLG P AL ++ V+
Sbjct: 109 IVAITGSNAKSTVTTLVGEMAKAAGINVAVGGNLGTP---------ALELLNDSVELYVM 159
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF---SHMVNTKLGLL 161
E+SS+Q+E K V+ +LN++ DHL+R++ M+ Y L K ++ H+V + +L
Sbjct: 160 ELSSFQLETVTK-LNAKVATILNISADHLDRYENMRAYILAKLRVYFGAEHIVVNRNDVL 218
Query: 162 PFGNQHLNEAIKGHRFN-LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ L +K F A G+F + D E A + + +KV GR
Sbjct: 219 T--HPPLAAGVKPIYFGGRADFGSFGLLTRD------GIEYLAKNLTPLMAASELKVRGR 270
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN NA A I +D A+ T++ HR + V V + +DSK TN+
Sbjct: 271 HNIDNALAALALGDAAGIPLD--AMLGTLKTFSGLRHRCEFVAEK-NAVEFYNDSKGTNI 327
Query: 281 EATCTGLMDL--KGHKCVILLGGQAK--------------------FGYSGVLIWKTLVN 318
AT + L + +++LGG+ K G +I + + +
Sbjct: 328 GATLAAISGLARDPQQLIVILGGEGKGQDFTELTPALRAINSCLVLIGRDATVIEQAVAD 387
Query: 319 NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF----QELA 374
+ P +M+DAVN A +A GDA++LSP CASFD F+N+E RG F QEL
Sbjct: 388 ---AAPIIHAGSMQDAVNKAFALAQPGDAVLLSPACASFDMFKNYEDRGEKFCQAVQELC 444
Query: 375 FS 376
S
Sbjct: 445 SS 446
>gi|375013443|ref|YP_004990431.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Owenweeksia
hongkongensis DSM 17368]
gi|359349367|gb|AEV33786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Owenweeksia
hongkongensis DSM 17368]
Length = 447
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 184/392 (46%), Gaps = 62/392 (15%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + ++G V+SE++F + KI+A+TG+NGK+T +L G+
Sbjct: 78 KAAVMKAIREAGIEVISEIEFGYRYCKG--KIIAITGSNGKTTTTLLTYDILKKAGVSVA 135
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+GN A ++ V+E+SS+Q++ N F P ++++ N+TPDHL
Sbjct: 136 LGGNVGNSF--------AASVAESDHDYYVLEISSFQLDDINS-FKPHIAILCNITPDHL 186
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGL--------LPFGNQH------LNEAIKGHRFN 178
+R+ M+NYA +K + + T + L + QH L ++
Sbjct: 187 DRYDYKMENYAASKFAITKYQDETDFFIYNKDDAETLKYMPQHTIKSKPLAITLQNENTE 246
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
AW+ + I + Q+ ++ + + G+HN +N+ + L+ L
Sbjct: 247 GAWLDETNTIHI------------TINNQEQMNINELALQGKHNTYNSMASGLASKLL-- 292
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
G+ EA+ ++ + HR++ V + + G+ +++DSKATN+ +T L ++ H+ I
Sbjct: 293 GIRKEAIRESLAGFESIEHRLEPVLQ-VYGMQFINDSKATNVNSTWYALDNM--HEPTIW 349
Query: 299 LGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------------------ANMKDAVNHAR 339
+ G G ++ + +I C V A+M +AV A
Sbjct: 350 IAGGVDKGNDYSQLFGLVEKKVKAIICLGVDNSKLHQEFEGKVDLIIDAADMDEAVRMAY 409
Query: 340 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
+M GD I+LSP CASFD F N+E RG F+
Sbjct: 410 KMGEKGDNILLSPACASFDLFENYEDRGRQFK 441
>gi|392407236|ref|YP_006443844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerobaculum
mobile DSM 13181]
gi|390620372|gb|AFM21519.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerobaculum
mobile DSM 13181]
Length = 453
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 182/384 (47%), Gaps = 58/384 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q G + ELDF + S KI+ VTGTNGKST V +L LG A + GN G PL
Sbjct: 82 QEGLPLKGELDFIYPYL--SGKIIGVTGTNGKSTTAALVHHLLTKLGYNAALAGNFGIPL 139
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ A KF V+EVSS+Q+ +F +++V N+ PDH++ H + + Y
Sbjct: 140 ANFAM---------KKFDYIVIEVSSFQLHWAT-HFSFDIAIVTNICPDHIDWHGSFEAY 189
Query: 143 ALTKCHLFSHMV--------NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP--GVKIDT 192
K + + + LL GN+ KG R L W P G +
Sbjct: 190 VKAKRRIIDLLAPDGYCIYRTKEEDLLQIGNR------KGAR--LYWSSNTPVYGNAVQD 241
Query: 193 EAKTASFEVPAVGVVSQLQLHN---MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+ ++ EV + L+L + + + GRHN NAA+A +V L G DV + ++
Sbjct: 242 DLVLSNSEVVLMANDHNLKLFSPTTLPLFGRHNVENAAMAMAAVYYL--GRDVNKASKSL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----- 304
+ PHR + V GV ++DDSK TN+ +T T + + G K V++LGG+ K
Sbjct: 300 LDFKNLPHRCERVGEK-DGVLFIDDSKGTNVASTITAITSIPGRK-VVILGGRGKGEQYD 357
Query: 305 ---------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 349
G I K L F V++M++AV+ A ++A G+ ++
Sbjct: 358 ELAKVVKEHVKAAILLGEEKEAISKALEEAKFYNFYF-VSSMEEAVSMAFKIADQGEIVL 416
Query: 350 LSPGCASFDEFRNFEHRGMVFQEL 373
LSP C S+D ++N+ RGM FQ++
Sbjct: 417 LSPACTSWDMYKNYHERGMHFQKI 440
>gi|319639041|ref|ZP_07993799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
C102]
gi|317399945|gb|EFV80608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
C102]
Length = 445
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 184/381 (48%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A V+ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADVVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + ++S ++ + G H + A V A L IG+ EAL ++ +
Sbjct: 253 TGRLKQGNEDLIST---QDIPLQGLH--NAANVMAAVALCEAIGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL---------------LG 300
PHR++ + + GV ++DDSK TN+ AT + L+ VIL L
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALA 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L GL++ A +++AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFIE-AFKA 444
>gi|116626353|ref|YP_828509.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Solibacter usitatus Ellin6076]
gi|122251657|sp|Q01Q46.1|MURD_SOLUE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|116229515|gb|ABJ88224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Solibacter usitatus Ellin6076]
Length = 442
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 174/367 (47%), Gaps = 32/367 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G RV+ E++ AA + + + +TG+NGK+T + G +L G+ VGGN+G P+
Sbjct: 84 RHGVRVIGEVELAAPFL--KGRTIGITGSNGKTTTTSLTGHILREAGVPVQVGGNIGLPV 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ A+ S V+E+SS+Q+E ++ F + + LN+T +HL+RH T +NY
Sbjct: 142 T-------AMVESSRDDGWNVLELSSFQLETIHE-FRAHIGLALNVTQNHLDRHHTFENY 193
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
A K LF +L + R + W + K+D A ++
Sbjct: 194 AAIKGRLFETQQAGDYAVLNAEDPVCVAYAARTRATVQWFSSRK--KVDPGATLCGNKLV 251
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
G + ++ + + GRHN N V A ++ GV+ A+ + + R HR++ V
Sbjct: 252 LFGKL-LMEAGEIPIRGRHNIEN--VLAAAIAASRAGVEHAAIAAAVRSFRAVEHRLEFV 308
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV------------ 310
R + GV + +DSKAT+++AT L G VIL G Y+ +
Sbjct: 309 -RKLNGVDFYNDSKATSVDATLKALDAFPGGLWVILGGKDKGLDYAALREPLTEKARAAL 367
Query: 311 ----LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
K ++P + AV HA A GD ++L+P CASFD+F+++EHR
Sbjct: 368 LIGAAAGKIAEQIAGAVPLVDAKTLDGAVRHAFAHAAPGDTVLLAPACASFDQFKSYEHR 427
Query: 367 GMVFQEL 373
G F+++
Sbjct: 428 GETFKQI 434
>gi|312885132|ref|ZP_07744816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309367205|gb|EFP94773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 441
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 186/401 (46%), Gaps = 58/401 (14%)
Query: 5 WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + G+A +L SG V+ +++ A ++A+TG+NGKSTV
Sbjct: 67 WLLNADLVVTNPGIALATPEIQQVLASGIPVVGDIELFAW--DNDKPVIAITGSNGKSTV 124
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
+ GQ L+ G++ VGGN+G P AL + + + V+E+SS+Q+E +
Sbjct: 125 TDWTGQALSAAGLDVAVGGNIGVP---------ALDLLQHQADIYVLELSSFQLETTSS- 174
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHLNEAI 172
V+V LNL+ DH++R+++M +Y K +F + +VN + P + E
Sbjct: 175 LKSKVAVFLNLSEDHMDRYRSMDDYRNAKLRIFDNADVRIVNADDIATYPLKDSSYLEFS 234
Query: 173 KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232
+ + A + T+ F + V+S ++ ++GRHN N V
Sbjct: 235 LDKKTDFA---------VTTQDDVEFFTLQGKKVLSTSEI---SLVGRHNVSNCLV---- 278
Query: 233 VLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290
VL L +GVD+E I+ HR Q+V D G+ WV+DSKATNL +T L L
Sbjct: 279 VLALLHSVGVDIERALPVIKSYSGLTHRCQVV-LDNGGIKWVNDSKATNLASTKAALTGL 337
Query: 291 KGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA---------------VANMKDAV 335
+ + LL G G + L N + + CF ++ + +
Sbjct: 338 RMEGKLFLLVGGVSKGADFSELAPILKNLNVQLCCFGQDGDAFMSLHPSAKRFESINEII 397
Query: 336 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
+ GD ++LSP CASFD+F+NF RG F ELA S
Sbjct: 398 HWISGQMKRGDVVMLSPACASFDQFKNFMARGDEFTELARS 438
>gi|365121357|ref|ZP_09338348.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Tannerella sp.
6_1_58FAA_CT1]
gi|363645980|gb|EHL85233.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Tannerella sp.
6_1_58FAA_CT1]
Length = 445
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 189/378 (50%), Gaps = 50/378 (13%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G ++SE++FA + K++ +TG+NGK+T +L + G+ + GN+G L
Sbjct: 85 KEGIPIISEIEFAGRYT--HAKMICITGSNGKTTTTLLTYHILKNAGLNVGLAGNVGKSL 142
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH-KTMK 140
AL + F V+E+SS+Q++ N Y F ++V+LN+TPDHL+R+ M+
Sbjct: 143 --------ALQVATENFDYYVIELSSFQLD--NMYKFKADIAVLLNITPDHLDRYGYDMQ 192
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-----PGVKIDTEAK 195
NY K + + + + + + +K H A + F GVK TE
Sbjct: 193 NYINAKFRITQNQTPNDAFIYWNDDPIITKELKAHDLK-ARLYPFSEEKEEGVKAYTENN 251
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ P + + ++ + GRHN +N+ A++S LDI E + ++ +
Sbjct: 252 QIVIDAPNDTLT--ITEDDLALQGRHNLYNSMAASISAKVLDIKK--EDIREGLKDFKGV 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGVL-IW 313
HR++ V R ++GV +++DSKATN+ + L ++ K +++LGG+ K YS + +
Sbjct: 308 EHRLEKVAR-VRGVEFINDSKATNVNSCWYALESMRT-KVILILGGKDKGNDYSEIEELV 365
Query: 314 KTLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGC 354
K VN +I C V N MK+AV+ A A G+ ++LSP C
Sbjct: 366 KEKVN---AIICLGVDNSKLHAFFEGKVPHIEDASSMKEAVDKAFACAQKGETVLLSPCC 422
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F+++E RG F+E
Sbjct: 423 ASFDLFKSYEDRGEQFKE 440
>gi|363898946|ref|ZP_09325457.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oribacterium sp.
ACB1]
gi|361959276|gb|EHL12563.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oribacterium sp.
ACB1]
Length = 454
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 182/376 (48%), Gaps = 54/376 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ E++ A Q + K+ AVTGTNGK+T V+ +G++L + V GN+GNP + A
Sbjct: 97 VIGEIELAYQSLKG--KLCAVTGTNGKTTTVSLIGEILKSQYADTHVVGNIGNPFTAEAL 154
Query: 88 HCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ V EVSS+Q+E I + F P VS + N+TPDHL+RHKTMKNY K
Sbjct: 155 DTEEQSAT-------VCEVSSFQLESIVD--FRPHVSAITNITPDHLDRHKTMKNYIAVK 205
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA----WIGAFPGVKIDTEAKTASFEVP 202
+ + +L + + L + G + NL W + K + F
Sbjct: 206 ESISINQTEEDSIVLNYMDPELRKF--GKKRNLKPKVLWFSSEEEPKEGFFLRDDEFIYK 263
Query: 203 AVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ +L + +++++G+HNY N + + L +GV ++ + + + HR++
Sbjct: 264 SKDKEEKLFKTKDVQLLGKHNYEN--IMCSMAVALKMGVPMDKIIKVCKKFKPVEHRIEF 321
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG------------ 309
V R+ GV + +DSK TN++A L + G V+L+GG GY
Sbjct: 322 V-RERSGVRYYNDSKGTNVDAAIQALRAMPGP--VLLIGG----GYDKHVDFDAWVKEFK 374
Query: 310 ------VLIWKT-------LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
VLI +T +G FA +M +AV A GD ++LSP CAS
Sbjct: 375 GRVKYLVLIGETRNQIAACAKKHGFHNLMFA-EDMDEAVKDCAAYADPGDYVLLSPACAS 433
Query: 357 FDEFRNFEHRGMVFQE 372
+ F+++E RG VF++
Sbjct: 434 WGMFKDYEERGRVFKD 449
>gi|148244846|ref|YP_001219540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Vesicomyosocius okutanii HA]
gi|146326673|dbj|BAF61816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Vesicomyosocius okutanii HA]
Length = 432
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 179/358 (50%), Gaps = 60/358 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++ +TG+NGKSTV + QM+ G+ +GGN+G P A C+ K + V+
Sbjct: 103 VIGITGSNGKSTVTKLLTQMIADSGMLVAIGGNIGIP----ALDCL-----NEKIEYYVL 153
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SSYQ++ + + VVLN+TPDHL+R+ + + Y +K L+ + +
Sbjct: 154 ELSSYQLDY-SYHLNLITGVVLNITPDHLDRYSSFEYYIHSKLSLYQY--------CQYS 204
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV--------GVVSQLQLHNMK 216
+L+E + + N+ + G I+ + F G + + + ++
Sbjct: 205 VVNLDEPLIPKQTNVKYFG------INIPKRANDFGTVTCHNICYLLKGNNTLMSVDEVQ 258
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
++G HN N +AAL+ LG I + + ++ +I+ + HR++ V + Q + + +DSK
Sbjct: 259 LIGEHNTKNI-LAALA-LGDQIKLPISSMIQSIKNFKALEHRLEWVIKK-QNIDYYNDSK 315
Query: 277 ATNLEATCTGLMDL--KGHKCVILLGGQAKFGYSGVLIWKTLVNNGL------------- 321
ATN +T + L K V++LGG AK L++K +N G+
Sbjct: 316 ATNAISTIIAIQTLMYKHQNIVLILGGIAK-KEDYTLLFK-FINKGITGVVLIGQSTRQF 373
Query: 322 -------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
SI M++AVN AR M +NG I+LSPGCASFD F NFEHRG VF++
Sbjct: 374 LQEINTNSIIYANTNTMQEAVNIARSMISNG-VILLSPGCASFDMFDNFEHRGRVFKD 430
>gi|240948408|ref|ZP_04752786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus minor NM305]
gi|240297234|gb|EER47792.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus minor NM305]
Length = 434
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 116/402 (28%), Positives = 182/402 (45%), Gaps = 67/402 (16%)
Query: 5 WLFLLEFQLKATGLACL-------LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA +Q+G V+ +++ + I+A+TG NGKSTV
Sbjct: 63 WLLSSDLIVISPGLALATPEIQQAIQAGVEVVGDIELFCR--EAKAPIIAITGANGKSTV 120
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T +M GI+ +GGN+G P AL K +++ V+E+SS+Q+E
Sbjct: 121 TTLTTEMAKQAGIKVGMGGNIGVP---------ALSLLKSDYELYVLELSSFQLETTYS- 170
Query: 118 FCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG---LLPFGNQHLNEAIK 173
+ +LN++ DH++R+ +++ Y K ++ + N + L + Q + + I+
Sbjct: 171 LKAKAATILNISEDHMDRYNNSVEEYRAAKLRIYQNAENIIVNGEDPLTYPTQAVEKLIR 230
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233
N + K DT +++ +G+ M + GRHN NA A
Sbjct: 231 FAEQNAEY-----SKKNDT---LYAYDDAVIGI------KQMLIRGRHNEMNALAAMALA 276
Query: 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-G 292
G+ E + ++I PHR Q V + GV WV+DSKATN+ +T L L+
Sbjct: 277 E--AAGIPREGIVKALQIYGGLPHRFQAVATN-DGVRWVNDSKATNVGSTVAALNGLEVA 333
Query: 293 HKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMK 332
+LLGG K FG G + K LS VA M+
Sbjct: 334 GTLYLLLGGDGKAADFSELVPLVNKSNIVCYCFGQDGEQLAK------LSTQSVLVATMQ 387
Query: 333 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+AV R GD ++LSP CAS D+F+NFE RG +F LA
Sbjct: 388 EAVEQIRPQLKTGDMVLLSPACASLDQFKNFEERGNIFMALA 429
>gi|424592101|ref|ZP_18031525.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1037(10)]
gi|408029846|gb|EKG66545.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1037(10)]
Length = 440
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 187/407 (45%), Gaps = 65/407 (15%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G RV+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIRVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------------- 328
T L LK + LL G G + L + + CF V
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARF 389
Query: 329 -ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 390 YDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|298369637|ref|ZP_06980954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
oral taxon 014 str. F0314]
gi|298282194|gb|EFI23682.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
oral taxon 014 str. F0314]
Length = 445
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 183/381 (48%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEQEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALIEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL---------------LG 300
PHR++ + + GV ++DDSK TN+ AT + L+ VIL L
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALA 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L GL++ A +++AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFIE-AFKA 444
>gi|343500667|ref|ZP_08738557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
tubiashii ATCC 19109]
gi|418477397|ref|ZP_13046530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
tubiashii NCIMB 1337 = ATCC 19106]
gi|342820029|gb|EGU54860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
tubiashii ATCC 19109]
gi|384575137|gb|EIF05591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
tubiashii NCIMB 1337 = ATCC 19106]
Length = 440
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 194/405 (47%), Gaps = 70/405 (17%)
Query: 5 WLFLLEFQLKATGLACLLQSGKRVMS---------ELDFAAQVIPRSIKILAVTGTNGKS 55
WL + + G+A L ++V++ EL FA QV + ++A+TG+NGKS
Sbjct: 67 WLMAADLVVTNPGIALALPEIEQVINAKILVVGDIEL-FAWQV---NKPVIAITGSNGKS 122
Query: 56 TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPN 115
TV + GQ+ G++ VGGN+G P AL + + V+E+SS+Q+E +
Sbjct: 123 TVTDWTGQVAQATGLKVGVGGNIGVP---------ALDLLRQDADLYVLELSSFQLETTS 173
Query: 116 KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHLNE 170
P + LNL+ DH++R++ M++Y K +F+H +VN P +L E
Sbjct: 174 S-LAPRAAAFLNLSEDHMDRYQGMEDYRQAKLRIFNHASACIVNADDRATYPEQASNLVE 232
Query: 171 AI--KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228
+ RF+L + ID + AS ++ ++GRHN NA V
Sbjct: 233 FSLNQATRFSLLEHEKTEYLAIDGKPICAS--------------SDLSLVGRHNVANALV 278
Query: 229 --AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTG 286
A L+ G+D+ + AL S + HR Q+V D QGV WV+DSKATN+ +T
Sbjct: 279 VLALLTEAGVDVAKGLSALKSYNGL----THRCQVV-ADNQGVKWVNDSKATNVASTMAA 333
Query: 287 L--MDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA---------------VA 329
L ++L+G K +L+GG K G + L + + + CF
Sbjct: 334 LAGLELEG-KLYLLVGGVGK-GADFSELAPILKSLNVQLCCFGEDGEQFMPLHSSAKRFD 391
Query: 330 NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M + + ++GD ++LSP CASFD+F NF RG F ELA
Sbjct: 392 TMHEIIKWVATQVSSGDMVLLSPACASFDQFNNFMARGDAFTELA 436
>gi|389577327|ref|ZP_10167355.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
cellulosolvens 6]
gi|389312812|gb|EIM57745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
cellulosolvens 6]
Length = 452
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 171/350 (48%), Gaps = 32/350 (9%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+LAVTGTNGK+T VT +G+++ E +V GN+G P ++ + L ++ + VA
Sbjct: 108 KVLAVTGTNGKTTTVTLLGEIMKDYYPEVYVVGNIGTPYTD-----VVLQQTENAWTVA- 161
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
EVSS+QME + F P S + N+T DHL RH TM+ Y K + + +L +
Sbjct: 162 -EVSSFQMETIEE-FHPVASALTNITEDHLNRHHTMEEYIRCKARVTENQTAEDCCVLNY 219
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG-VVSQLQLHNMKVMGRHN 222
++ L + + + + ++ + + + G V+ ++ +++++G HN
Sbjct: 220 EDEVLRPFAEKVNAKVIFFSSRRVLEKGIYLEGDTIRLKDGGEVIDVVKTGDLQLLGLHN 279
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
+ N VA + GV ++++ TI R HR++ V +GV + +DSK TN +A
Sbjct: 280 FENVMVAV--AMAYFAGVPMDSIRRTICAFRGVEHRIEFVEEK-KGVRYYNDSKGTNPDA 336
Query: 283 TCTGLMDLKGHKCVILLG---------------GQAKF----GYSGVLIWKTLVNNGLSI 323
G+ + C+I G G+ KF G + I T G
Sbjct: 337 AIKGIQAMDRPTCLIGGGFDKQLPFDDWINAFDGKVKFFALIGQTAQTIAGTAERLGFPK 396
Query: 324 PCFAVA-NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
A N+++AV A GDA++LSP CAS+ +F N+E RG +F+E
Sbjct: 397 EKIAFCDNLEEAVKACASHAVEGDAVLLSPACASWGQFDNYEQRGDMFKE 446
>gi|357406920|ref|YP_004918844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylomicrobium
alcaliphilum 20Z]
gi|351719585|emb|CCE25261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylomicrobium
alcaliphilum 20Z]
Length = 458
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 173/361 (47%), Gaps = 72/361 (19%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T +G M G + VGGNLG P AL P ++ ++
Sbjct: 126 IVAITGSNGKSTVTTMLGAMAKEAGKKTAVGGNLGTP---------ALDLLAPDIELYIL 176
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E + + + VLN++PDHL+R+ + YA K +F + ++N L
Sbjct: 177 ELSSFQLE-RTEILNASAATVLNISPDHLDRYDNVAEYAREKQKIFRGTGAMVLNADDPL 235
Query: 161 LPFGNQHLNEAIKGHR-----------FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ 209
+ ++ A+ G + F+LAW G G + +
Sbjct: 236 V------IDMAVPGRKISTFSINSEAEFHLAWDG-HKGYLMQNHKRL------------- 275
Query: 210 LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGV 269
+ L + + G HN A A LG IG+D +++ ++ + HRMQ V G+
Sbjct: 276 MMLDELPLEGLHNA--ANALAAIALGTAIGLDEQSMCKALKKFKGLEHRMQRVAVK-NGI 332
Query: 270 TWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------------------FGYSG 309
TWV+DSKATN+ A C ++ + +++ GG AK G G
Sbjct: 333 TWVNDSKATNIGA-CVAALEGYTRQVILIAGGDAKGADMNELVPAIQRKAKSVILMGKDG 391
Query: 310 VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 369
LI + L NG S+P + N+ AV A +A GD ++LSP CAS D++++++ RG
Sbjct: 392 PLIEQAL--NG-SVPIYKAENVARAVKIAAEIADEGDTVLLSPACASLDQYKSYKERGEK 448
Query: 370 F 370
F
Sbjct: 449 F 449
>gi|402846605|ref|ZP_10894916.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
sp. oral taxon 279 str. F0450]
gi|402267821|gb|EJU17212.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
sp. oral taxon 279 str. F0450]
Length = 481
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 194/394 (49%), Gaps = 59/394 (14%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + + G V+SE++ A + + K++ +TG+NGK+T ++ +L G++
Sbjct: 101 KAPIMVAIRERGIPVISEIELAGRYL--KGKVIGITGSNGKTTTTMWLHHILTEAGMKPA 158
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+ GN+G L+ +P +P + VVE+SS+Q++ K F +++++N+TPDHL
Sbjct: 159 LAGNVGFSLARQV-----IPDEQPDY--FVVELSSFQLDDMYK-FRVHIALLMNITPDHL 210
Query: 134 ER-HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR---------FNLAWIG 183
+R H + YA+ K + + + ++ ++ + H+ +G
Sbjct: 211 DRYHYNFEEYAMAKMRILQNQTAEDAFIYWGEDEFVSRYVMSHQPMPMQTLSFLTYPQVG 270
Query: 184 AFPGVKIDTEAKT----ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239
+ D + SFE P + QL L G HN NA A+++ L L +
Sbjct: 271 SAADKSDDNMMRLHFDGKSFEFP----IDQLALQ-----GPHNLQNAMAASIAALRLGVS 321
Query: 240 VDV--EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
DV AL+ + + PHR++ V + GV +++DSKATN+ +T L + V+
Sbjct: 322 HDVLRRALSDFVNV----PHRLEKVGV-LDGVRYINDSKATNVSSTYYALRTMTT-PYVL 375
Query: 298 LLGGQAK------------FGYSGVLIWKTLVNNGLS-----IPCFAVA-NMKDAVNHAR 339
+LGG+ K G G++ T V +P A A +M++A+ HAR
Sbjct: 376 ILGGEDKGNDYMDITELITSGARGLVFLTTDVLKLYKSFHGKVPQIASALSMEEAIAHAR 435
Query: 340 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
MA GD ++LSP CASFD F ++ HRG F+E+
Sbjct: 436 EMAQPGDTVLLSPACASFDLFTSYIHRGDRFREV 469
>gi|405354263|ref|ZP_11023643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chondromyces
apiculatus DSM 436]
gi|397092506|gb|EJJ23264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 455
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 175/375 (46%), Gaps = 41/375 (10%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V E++ A +++ S+ + +TGTNGKST G + + G FVGGNLG P S
Sbjct: 93 AGVAVWGEVELAGRLL-SSVPLFGITGTNGKSTTTALTGTLFSTGGKRTFVGGNLGRPFS 151
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
EAA + + VVE+SSYQ+E + P + +LNLTPDH++R+ + Y
Sbjct: 152 EAAM-------APEDWDALVVELSSYQLE-GIRALRPRGAAILNLTPDHIDRYPSHAAYG 203
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGA----FPGVKIDTEAKT 196
K +F ++ + L A K + + G P + A+
Sbjct: 204 EAKARIFQSQQAGDFAVVNADDADVLGLARAAKAPVYGFSLTGTPVADAPKLAGLAVAEP 263
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEILRTP 255
F + +G L N + G HN NA AAL LG GV A+ + ++
Sbjct: 264 GGFRLAFLG--EHYTLTNRALRGAHNAQNAMAAALLARLG---GVASGAVQAGLDGYPGL 318
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI--W 313
PHR++ V R + GV WV+DSKATN+++ L G +I GG+ K ++
Sbjct: 319 PHRLESV-RMLDGVEWVNDSKATNVDSVLVALRAFAGGVWLI-AGGKGKGAPYAPMVDAG 376
Query: 314 KTLVNNGLSI---------------PCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+ VN L+I A + AV AR + GD ++LSP CASFD
Sbjct: 377 RGKVNGVLTIGDDADTLAQAYAGAAQVHACGTLDRAVAKARELTRPGDTVLLSPACASFD 436
Query: 359 EFRNFEHRGMVFQEL 373
+F+NFE RG F+ L
Sbjct: 437 QFKNFEDRGESFKRL 451
>gi|261364816|ref|ZP_05977699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
mucosa ATCC 25996]
gi|288566851|gb|EFC88411.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
mucosa ATCC 25996]
Length = 445
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQRESKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL---------------LG 300
PHR++ + GV ++DDSK TN+ AT + L+ VIL L
Sbjct: 308 PHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQNLLFVILGGMGKGQDFTPLRTALA 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L GL++ A +++AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFIE-AFKA 444
>gi|349610789|ref|ZP_08890115.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria sp.
GT4A_CT1]
gi|348615608|gb|EGY65120.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria sp.
GT4A_CT1]
Length = 445
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 183/381 (48%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGDEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL---------------LG 300
PHR++ + + GV ++DDSK TN+ AT + L+ VIL L
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALA 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L GL++ A +++AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFIE-AFKA 444
>gi|347758651|ref|YP_004866213.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micavibrio
aeruginosavorus ARL-13]
gi|347591169|gb|AEP10211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micavibrio
aeruginosavorus ARL-13]
Length = 467
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 178/365 (48%), Gaps = 51/365 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K + +TGTNGKST +G +LN G+ A VGGN+G AA I LP PK V V
Sbjct: 115 KTIGITGTNGKSTTTALIGHILNAGGVTASVGGNIG----RAALD-IELP---PKDGVIV 166
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ F P + V +NLTPDHL+RH M YA K +F +G+
Sbjct: 167 LELSSYQLDL-CPTFAPDIGVHMNLTPDHLDRHGDMAGYAAAKMRIFRGAGAAIIGVDDE 225
Query: 164 GNQHLNEAIK--GHR--FNLAWIGAFP-GVKIDTEA--KTASFEVPAVGVVSQLQLHNMK 216
++ + + ++ G R + ++ + A GV + E +G VS L
Sbjct: 226 PSRAMFKQVQDTGDRDVYAISVVNAVERGVYVSNGVLFDCMDGEAREIGSVSALT----T 281
Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
+ G HN+ N AA A + GL D + + + I+ PHR Q + R I GV +V+D
Sbjct: 282 LPGVHNHQNICAAYIATRLSGL----DADTIMNAIKTYPGLPHR-QFMTRVINGVAYVND 336
Query: 275 SKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIP------CFAV 328
SKATN +AT L+ + + C I+ G G +G+ + V I C +
Sbjct: 337 SKATNADATAKALVCYR-NICWIVGGKPKDGGLNGLEPFMDRVRKAFVIGAAMDDFCKWL 395
Query: 329 AN----------MKDAVN--HARRMATNGD-----AIVLSPGCASFDEFRNFEHRGMVFQ 371
N + AVN H A G+ ++LSP CASFD+FR+FEHRG F
Sbjct: 396 DNHGVEYVRSETLDRAVNDAHITAQAARGEPGGAGVVLLSPACASFDQFRSFEHRGDEFT 455
Query: 372 ELAFS 376
++ +
Sbjct: 456 KMVMA 460
>gi|256425925|ref|YP_003126578.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chitinophaga
pinensis DSM 2588]
gi|256040833|gb|ACU64377.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
pinensis DSM 2588]
Length = 446
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 185/374 (49%), Gaps = 51/374 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA + S K++A+TG+NGKST + G+ A + GN+G LS A
Sbjct: 90 VISEIEFAYRYSKDS-KVIAITGSNGKSTTTALTFNIFETAGLHAAMVGNIG--LSYAR- 145
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
P+ +VEVSS+Q++ + F P V+++LN+TPDHL+R+ M NY +K
Sbjct: 146 QIATAPAD-----YYIVEVSSFQLD-DIRDFKPNVAILLNITPDHLDRYDYKMANYVASK 199
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-------FNLAWIGAFPGVKIDTEAKTASF 199
+ + + + + +K H F + G + +
Sbjct: 200 FRIAMNQGPEDYFVYCIDDPEITNYLKEHTIYSTTIPFTIMEPLKQGGFMANEQVNIQVN 259
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ P + + ++++ + G+HN +N+ A ++ +DI E + ++ ++ HRM
Sbjct: 260 DEPMI-----VSMYDLALKGKHNLYNSMAAGIAGRTMDIR--KEKIRESLTSFKSLEHRM 312
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGVLIWKTLVN 318
+ V ++GV +++DSKATN+ + L ++ H V+++GG K YS + + LV
Sbjct: 313 EYVAT-VRGVDFINDSKATNVNSLWFALESME-HPVVLVMGGVDKGNDYSAI---RDLVK 367
Query: 319 NGL-SIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFD 358
+ +I C V N MKDAVN A + A GD ++LSP CASFD
Sbjct: 368 EKVKAIICLGVDNAPIQDALSGYTPVMIDTRSMKDAVNAAFQYAAKGDVVLLSPACASFD 427
Query: 359 EFRNFEHRGMVFQE 372
F+N+E RG F+E
Sbjct: 428 LFKNYEDRGRQFKE 441
>gi|429124553|ref|ZP_19185085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hampsonii 30446]
gi|426279564|gb|EKV56586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
hampsonii 30446]
Length = 471
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 185/372 (49%), Gaps = 42/372 (11%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+++ E++FA +P +AVTGT+GK+T VT V ++++ +A + GN+GN S+
Sbjct: 111 KIIGEIEFAYNFLPNR-NYIAVTGTDGKTTTVTLVHKIISSYK-KARLVGNVGNTFSKE- 167
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + +P + V+E+SS+Q+E K F ++ VLN+ DHL+R+K + +Y TK
Sbjct: 168 -----IETIEPDEDI-VLELSSFQLETVEK-FHAHIAAVLNIAEDHLDRYKDIDDYFNTK 220
Query: 147 CHLFSHMVNTKLGLLPFGN-------QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
++ + +L + N LN K + F + + E + +
Sbjct: 221 KNIAINQNKNDFLILNYDNIYTNIWYNELNNNCKMKLLTFSLKSKFADIYYNEEDEYIYY 280
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E + + + K++G+HN N A L L I VD+ + T+ + HR+
Sbjct: 281 ENEKL-----FSIADRKLIGKHNIANILAAVLICLKDKIPVDI--IEKTVNNFKGIEHRV 333
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLIW--- 313
++V +I GV +++DSKAT++ + + L ++++GG+ K F +I
Sbjct: 334 ELV-AEINGVKYINDSKATSMNSVMSALKSF-DKDIILIMGGRNKNIDFTSLNNIIESRV 391
Query: 314 KTLVNNGLSIPCF----------AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
K L+ G + + + DA +A ++ +GD ++LSPGCASFD F+N+
Sbjct: 392 KKLILIGEAADALNEMIHFENKIIIKDFTDAFYYASAISISGDTVLLSPGCASFDMFKNY 451
Query: 364 EHRGMVFQELAF 375
E RG F+ L +
Sbjct: 452 EERGKYFKSLVY 463
>gi|340363640|ref|ZP_08685963.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
macacae ATCC 33926]
gi|339885319|gb|EGQ75048.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
macacae ATCC 33926]
Length = 445
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 183/381 (48%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL---------------LG 300
PHR++ + + GV ++DDSK TN+ AT + L+ VIL L
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALA 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L GL++ A +++AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFIE-AFKA 444
>gi|157413927|ref|YP_001484793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9215]
gi|157388502|gb|ABV51207.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9215]
Length = 478
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 100/390 (25%), Positives = 184/390 (47%), Gaps = 55/390 (14%)
Query: 16 TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
T + L + G +V+ E++ A +++ + + +TGTNGK+TV + +L G+ A
Sbjct: 94 TTIMELKKKGLKVIGEINVAWEIL-KDTNWIGITGTNGKTTVTHLLSHILCDTGLYAPFA 152
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G PL + A+ K V E+SSYQ+EI + P + + T DHLER
Sbjct: 153 GNIGTPLCKYAY-----SKKTEKIDWVVAELSSYQIEISPE-VKPNIGIWTTFTEDHLER 206
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
HKT++NY K L + + + + +++L + H +L+ GV I T
Sbjct: 207 HKTLENYFNIKKSL---LEKSDFRIYNYDDKNL----RNHYSSLS-----RGVWITTSFD 254
Query: 196 TASFEVPAVGVVSQ----------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
++F + Q +L + + G HN N + + +G+ + +
Sbjct: 255 KSNFIQCDYWIDDQAFIVERGKKLFKLEHFSLKGMHNLQNLLLVIAA--ARKVGLSGKEI 312
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK- 304
++ + PHRM+ ++++ + ++DSKATN +++ G+ ++G + +I+ GG+ K
Sbjct: 313 KDSLSNYKQLPHRMETIYKN-DDLEIINDSKATNFDSSIAGISSIEG-QIIIIAGGRLKG 370
Query: 305 -------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 345
FG S ++ L+N G F + +K+ +N N
Sbjct: 371 NEYSEWIKVLKKKVKCVFLFGESSKVLKMALINEGFKKNIFEFSELKELLNFVFHYLQNN 430
Query: 346 D--AIVLSPGCASFDEFRNFEHRGMVFQEL 373
++ SP C+SFD+F+N+E RG F++L
Sbjct: 431 KVGTLLFSPSCSSFDQFKNYEERGDYFKKL 460
>gi|419798035|ref|ZP_14323478.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
VK64]
gi|385696376|gb|EIG26865.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
VK64]
Length = 445
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 183/381 (48%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL---------------LG 300
PHR++ + + GV ++DDSK TN+ AT + L+ VIL L
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALA 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L GL++ A +++AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFIE-AFKA 444
>gi|329118771|ref|ZP_08247469.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
bacilliformis ATCC BAA-1200]
gi|327465118|gb|EGF11405.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
bacilliformis ATCC BAA-1200]
Length = 450
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 184/380 (48%), Gaps = 49/380 (12%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A + R KI+A+TG+NGK+TV + VG + G++ V GN+G P
Sbjct: 94 QNGGRVLGDIEIFAHIANRRGDKIIAITGSNGKTTVTSLVGHLCEKCGLDTVVAGNIGTP 153
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA K V V+E+SS+Q+E + P+ + VLN++ DHL+R+ + +
Sbjct: 154 VLEAEMQ-----RGGKKAGVWVLELSSFQLE-NTESLRPSAAAVLNISEDHLDRYDDLLD 207
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF-- 199
YA TK +F + G Q LN R A A GVK + K A +
Sbjct: 208 YAHTKDKIFRGV----------GVQVLNADDALCR---AMKRAGRGVKWFSLEKQADYWL 254
Query: 200 --EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E + VS ++ + + ++ A V A L +G+ E L I+ + PH
Sbjct: 255 ERETGRLKAVSDDLMNTTDIPLQGLHNAANVMAAVALCEAVGLPREELVKHIQTFKGLPH 314
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG---------------GQ 302
R++ + + GV ++DDSK TN+ AT + L+ IL G G+
Sbjct: 315 RVEKIG-EKNGVVFIDDSKGTNVGATAAAISGLQSPLFAILGGLGKGQDFTPLAQVLRGK 373
Query: 303 AK----FGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
K G I + L GL+ I C A +++AV A A +GD ++LSP CAS
Sbjct: 374 VKAVLLIGRDAPQIRRDLAGAGLNLIDC---ATLQEAVQTAYAQAQSGDIVLLSPACASM 430
Query: 358 DEFRNFEHRGMVFQELAFSA 377
D F+N+ HR VF E AF A
Sbjct: 431 DMFQNYAHRSQVFAE-AFQA 449
>gi|192359523|ref|YP_001983387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cellvibrio
japonicus Ueda107]
gi|190685688|gb|ACE83366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellvibrio
japonicus Ueda107]
Length = 455
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 163/352 (46%), Gaps = 50/352 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M GI+ VGGNLG P AL + ++ V+
Sbjct: 118 MVAITGSNAKSTVTTLVGEMAKAAGIQVAVGGNLGTP---------ALELLRDDIELYVM 168
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF---SHMVNTKLGLL 161
E+SS+Q+E NK V+ +LN++ DHL+R+ M+ Y L K ++ ++V + +L
Sbjct: 169 ELSSFQLETVNK-LNAKVATILNISADHLDRYPDMRAYILAKLRIYFGAENIVVNRNDIL 227
Query: 162 PFGNQHLNEAIKGHRFN-LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ L K F A GAF + D E A P L +K+ GR
Sbjct: 228 T--HPPLAVGAKPVYFGGRADFGAFGLLDRDGEEYLAKNLTPL------LPARELKIRGR 279
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN NA A I + A+ + R HR + V I GV + +DSK TN+
Sbjct: 280 HNIDNALAALALGDAAGI--PMAAMLGALREFRGLRHRCEYVA-SIDGVEFYNDSKGTNI 336
Query: 281 EATCTGLMDLK--GHKCVILLGGQAK--------------------FGYSGVLIWKTLVN 318
AT + L + ++ GG K G LI +
Sbjct: 337 GATLAAINGLARVPSRLFVIAGGDGKGQDFTELTASLVASRCVLVLIGRDAPLIASAV-- 394
Query: 319 NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
G +P +KDAVN + +AT GDA++LSP CASFD F+N+E RG F
Sbjct: 395 -GEQVPVHVAQTLKDAVNLSLALATAGDAVLLSPACASFDMFKNYEDRGEQF 445
>gi|229588488|ref|YP_002870607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens SBW25]
gi|229360354|emb|CAY47211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens SBW25]
Length = 448
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 173/356 (48%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGLPCWTFGLSKPDFKAF-GIREEHGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFGGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D++G K V++ GG K G LI
Sbjct: 329 NVGAALAAIEGLGADIEG-KLVLIAGGDGKGADFKDLKGPVATHCRAVVLIGRDSDLIAA 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L G ++P ++ DA+ H + +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 388 AL---GDAVPQVRATSLDDAIAHCKALAQPGDAVLLSPACASFDMFKNYEERGQLF 440
>gi|371778096|ref|ZP_09484418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerophaga sp.
HS1]
Length = 450
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 192/382 (50%), Gaps = 48/382 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+ Q G ++SE++FA + K++ +TG+NGK+T T+ M+ G + + GN+G
Sbjct: 83 IRQKGIPIISEIEFAGRF--SKAKMIGITGSNGKTTTATWTYHMIKKGGKDVRLAGNIGT 140
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139
L A H I SS P ++ V+E+SS+Q+E + C V+V+ NL+PDHL+R+
Sbjct: 141 SL---ARHLI---SSDP--ELFVLELSSFQLEDMYDFKC-DVAVITNLSPDHLDRYDYRF 191
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG-AFPGVKIDTEAKTAS 198
+ Y K + ++ + K + + N H E +K ++ + G +P D + A
Sbjct: 192 EKYVDAKFRILNN--HDKQSVFIY-NAHDQEIMK-RMGDMQYPGIRYPFALSDVYGQGAC 247
Query: 199 FEVPAVGVVSQLQ------LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
E + V+ L+ L+ + + G+HN N A+L+ L +D ++A+ ++
Sbjct: 248 VEYEQM-VIKTLENRVTFPLNQLALSGKHNICNGMAASLAALSVD--TPIQAVIEGLKDF 304
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI 312
HR++ V ++ GV +++DSKATN+++ L + K V+ + G G L+
Sbjct: 305 DGVEHRLESVD-EVNGVLYINDSKATNVDSVWYALESM--DKPVVWIAGGTDKGNDYTLL 361
Query: 313 WKTLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPG 353
++ C V N M DAV+ A++ + GD ++LSP
Sbjct: 362 EDLAGQKVKTLICLGVDNRKLISAFTGKIPEIVETRSMADAVSVAQKQSKPGDVVLLSPA 421
Query: 354 CASFDEFRNFEHRGMVFQELAF 375
CASFD F+N+EHRG +F+E +
Sbjct: 422 CASFDLFKNYEHRGKLFKEEVY 443
>gi|410478394|ref|YP_006766031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
ferriphilum ML-04]
gi|406773646|gb|AFS53071.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Leptospirillum
ferriphilum ML-04]
Length = 391
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 191/385 (49%), Gaps = 46/385 (11%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+ VM E+++A+ ++ ++AV GTNGKST + L G F+GGN G PLS+
Sbjct: 4 RNVMGEMEWASSWT--AVPLVAVGGTNGKSTTSALLAHFLEAAGERVFLGGNFGTPLSDM 61
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
S P VAVVE+SS+Q E F P V+++LN+TPDHL+R+ ++ +Y
Sbjct: 62 VLS--ERRGSSPLPTVAVVELSSFQAETMG-IFRPVVNLLLNITPDHLDRYLSVDHYRNA 118
Query: 146 KCHLFSHMVNTKLGLL---PFGNQHLNEAIKGHRFNLAWI----GAFP----GVKIDTEA 194
K + F M +L P + + R LAW G+ P G+ ++ +A
Sbjct: 119 KWNAFQTMEKESFTVLNRDPACGVYPPFSPISSR--LAWFYGSKGSCPDRTGGLILEGDA 176
Query: 195 KTASFE-VPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL-SVLGLD-IGVDVEALNSTIE- 250
+A+ + + + +S L + G N N A + L +VL L G E + + +E
Sbjct: 177 LSATLDGIEGLPPIS-WNLEKFPLEGMGNRQNLAASLLGAVLYLKATGKHPEQVTTVLEE 235
Query: 251 ---ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI--LLGGQAKF 305
R PHRM++V + +G+ +++DSKATN++AT L GH + +LGG+ K
Sbjct: 236 AAASFRGLPHRMEVVG-EWKGIRFINDSKATNVDATRLALEGYAGHSPFVHLILGGRDKG 294
Query: 306 GYSGVLIW--KTLVNN---------------GLSIPCFAVANMKDAVNHARRMATNGDAI 348
L +T V + G +P ++++AV+ A A+ GD +
Sbjct: 295 APYAPLREGIRTSVKSIAVLGEARDKIREELGSLVPLRMCESLEEAVDVAAGQASEGDRV 354
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+LSP C+S+D F +E RG VF+ +
Sbjct: 355 LLSPACSSYDMFHGYEERGAVFRSI 379
>gi|402698518|ref|ZP_10846497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fragi A22]
Length = 448
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 181/353 (51%), Gaps = 50/353 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMALAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E N+ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTNQ-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
++E + F L+ AF G++ + K +FE + + + +KV
Sbjct: 221 T---RPLMSEGLPCWTFGLSAPDFKAF-GLREENGEKYLAFEFENL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ S + HR Q V R+ +GV++ +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLSGLRSFTGLEHRCQWV-REFEGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKFG-YSG------------VLIWKT--LVNN 319
N+ A + D+ G K V++ GG K +SG VL+ + L+ +
Sbjct: 329 NVGAALAAIEGLGADMDG-KLVLIAGGDGKGADFSGLHDSVARYCRAVVLMGRDAGLIAD 387
Query: 320 GL--SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L S+P V+++ +A+ +R +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 388 ALGDSVPQVRVSSLDEAIAQSRSLARPGDAVLLSPACASFDMFKNYEERGHLF 440
>gi|384086037|ref|ZP_09997212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 449
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/367 (31%), Positives = 168/367 (45%), Gaps = 36/367 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G VM +++ A + S I+A+TG+NGKSTV T V ++ GI GGNLG P
Sbjct: 88 KAGITVMGDIELFALLA--SAPIIAITGSNGKSTVTTLVSEIARKAGIMVATGGNLGTPA 145
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
E LP S P+ ++E+SS+Q++ F P V+ +LNL+PDHL+ H Y
Sbjct: 146 LE------LLPESGPEPAWYILELSSFQLDACTT-FRPRVAAILNLSPDHLDWHGDYAQY 198
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F +M N L+ G ++ G + I F ++A + +
Sbjct: 199 GAAKARIFQNM-NAGDVLVLNGEDAFTSSLPGQVPDSVAIRCFAVHDERSDAYVLNDRLT 257
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ L ++++ G HN NA AAL + A+ PHR+ V
Sbjct: 258 LRNSGALLPAADLRMQGGHNIENALAAALLAEAAQF--PLAAIQEVFCQFSGLPHRLAWV 315
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------------ 304
+ QGV + DDSK TNL AT + L G V++LGG K
Sbjct: 316 A-EYQGVNYYDDSKGTNLGATLKAMSGLSG-PLVMILGGDVKGADLSPLQQACRDQRAAV 373
Query: 305 -FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
G I + L N IP +M+DAV A A GD ++LSP CAS D FR++
Sbjct: 374 VLGKDAKKIAQMLEN---VIPVDYADSMQDAVLKAASRAMPGDQVLLSPACASTDMFRDY 430
Query: 364 EHRGMVF 370
+ RG F
Sbjct: 431 QDRGQQF 437
>gi|320157425|ref|YP_004189804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
MO6-24/O]
gi|319932737|gb|ADV87601.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
MO6-24/O]
Length = 442
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 168/366 (45%), Gaps = 73/366 (19%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N G++ +GGN+G P AL + + ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP---------ALDLLEQEVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTK--- 157
E+SS+Q+E + + LNL+ DH++R++ M +Y K +F H +VN
Sbjct: 161 ELSSFQLETTSSLHL-VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNRDDRQ 219
Query: 158 -----------LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L L+ FG+ + H+ +W+ + + AS E
Sbjct: 220 TYPETSHGQQLLALVTFGSDDKEFGVMSHQGE-SWL------SYNQQPILASRE------ 266
Query: 207 VSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+K++G+HN N V A L+ G+D + AL S + HR Q+V
Sbjct: 267 --------LKLVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGL----THRCQVV-A 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSI 323
D +G+ WV+DSKATNL +T L L K +L+GG K G + L L +
Sbjct: 314 DNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLVGGDGK-GADFSPLKPILAQLNLQL 372
Query: 324 PCFAV---------------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
CF M+D + H +GD ++LSP CASFD+F NF RG
Sbjct: 373 CCFGADGDQFMPLHASATRFERMEDVIEHISPQLQSGDMVMLSPACASFDQFSNFMARGD 432
Query: 369 VFQELA 374
F ELA
Sbjct: 433 RFAELA 438
>gi|148828296|ref|YP_001293049.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittGG]
gi|166224763|sp|A5UIR0.1|MURD_HAEIG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|148719538|gb|ABR00666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittGG]
Length = 437
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 186/404 (46%), Gaps = 66/404 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYSL 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
V+V LN+T DH++R+ +++Y K + N K+G+L FG NE
Sbjct: 171 KAAAVTV-LNVTEDHMDRYMDLEDYRQAKLRIHH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVAN 330
K +LLGG K FG G + K S +
Sbjct: 336 IEGKLHLLLGGDGKGADFSELAELINQPHIICYCFGRDGAQLAK------FSSQSYLFET 389
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 390 MEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|385850666|ref|YP_005897181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M04-240196]
gi|325205489|gb|ADZ00942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M04-240196]
Length = 445
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 181/381 (47%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRDDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L IG+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAIGLSREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG--------------- 300
PHR++ + GV ++DDSK TN+ AT + L+ VIL G
Sbjct: 308 PHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALV 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L GL++ A + +AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLGEAVQTAYAQAEAGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFIE-AFKA 444
>gi|337285808|ref|YP_004625281.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermodesulfatator
indicus DSM 15286]
gi|335358636|gb|AEH44317.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermodesulfatator
indicus DSM 15286]
Length = 463
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 127/366 (34%), Positives = 184/366 (50%), Gaps = 40/366 (10%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ EL+ + + KILA+TGTNGK+T +L G + FVGGN G PLSE
Sbjct: 97 VIGELELGYRFLLPGKKILAITGTNGKTTTTAMATDILRLSGKQVFVGGNYGTPLSEFII 156
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ K V+E SS+Q+E + F P V+V+LN+TPDHLER+ K YAL K
Sbjct: 157 NG-------QKADYLVLETSSFQLESIDT-FRPQVAVILNITPDHLERYAGFKEYALAKA 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
++ + +LP + L E + + + ++G G E K +SF +
Sbjct: 209 RIYENQTPEDFVILP---EELLEILPTPKSKMFFLGK-KGTN-GAELKGSSFVLHLPSGP 263
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDI---GVDVEALNSTIEILRTPPHRMQIVHR 264
+ L K++G HN N VAAL+ L G+ EA+ S I PHR++ V
Sbjct: 264 EEYSLAGFKLLGEHNRLNFTVAALAARLLGATPQGIK-EAIKSFIGF----PHRLEFVG- 317
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW------KTLVN 318
GV +V+DSKATN++AT L L ++++GG+ K L+ K L+
Sbjct: 318 TFGGVYFVNDSKATNVDATLKALRGLSA-PIILIMGGKHKGSSYRPLMGEIKRKVKLLIL 376
Query: 319 NGLSIPCFA-----------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
G S A V N+++AV A AT GD ++LSP ASFD+F N++ RG
Sbjct: 377 MGESRYVMAEDLRECTDMKIVENLEEAVAVAISEATLGDTVLLSPAAASFDQFENYQERG 436
Query: 368 MVFQEL 373
VF+EL
Sbjct: 437 DVFKEL 442
>gi|293603442|ref|ZP_06685867.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
piechaudii ATCC 43553]
gi|292818144|gb|EFF77200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
piechaudii ATCC 43553]
Length = 510
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 178/397 (44%), Gaps = 68/397 (17%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R +++L + PR +L VTGTNGK+TV +++ G+ GN+ A
Sbjct: 118 RALADLAETQEYRPR---LLTVTGTNGKTTVTALTRDLIDASGLSVVAAGNISPAALTAL 174
Query: 87 FHCI---ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ ALP QV V+E+SS+Q+E + +VVLN+T DHL+ H M YA
Sbjct: 175 MDALDNDALP------QVWVLELSSFQLET-TRSLMADAAVVLNVTQDHLDWHGGMDAYA 227
Query: 144 LTKCHLFS---------------HMVNT--KLGLLPFGNQHLNEAIKGHRFNL----AWI 182
K + + MV T L + FG + + E + L AW+
Sbjct: 228 AAKARILTMARIAIVNRDDPLTIAMVPTVSALNVRSFG-RDMPELVGDMGLELGQGVAWL 286
Query: 183 GAFPGVKIDTEA------KTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLG 235
A D A K A V A G +S+L + +++ G HN NA A
Sbjct: 287 VASEPSDFDEPAPPTRRKKDAPEPVRANGRMSRLMPVDALRIRGIHNALNALAALQLARC 346
Query: 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC 295
LD+G A+ T+ PHR V R I GV +++DSK TN+ AT L L G
Sbjct: 347 LDLGWG--AMLRTLREYAGEPHRAAFV-RQIGGVDYINDSKGTNVGATVAALEGL-GQPV 402
Query: 296 VILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAV 335
V++ GGQ K G G I + L + G++ C V ++ AV
Sbjct: 403 VLIAGGQGKGQDFSPLIPVVSRHARAVMLIGVDGPEIGRVLASTGVN--CITVDSLHAAV 460
Query: 336 NHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
A +A GDA++LSP CAS D FRN+ HRG VF E
Sbjct: 461 RGAAELAQPGDAVLLSPACASLDMFRNYPHRGQVFME 497
>gi|296314335|ref|ZP_06864276.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
polysaccharea ATCC 43768]
gi|296838885|gb|EFH22823.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
polysaccharea ATCC 43768]
Length = 445
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 183/381 (48%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNHRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGTLK---QGDEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL---------------LG 300
PHR++ + GV ++DDSK TN+ AT + L+ VIL L
Sbjct: 308 PHRVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALA 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L GL++ A +++AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYAQAEAGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFIE-AFKA 444
>gi|319897397|ref|YP_004135594.1| udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Haemophilus
influenzae F3031]
gi|317432903|emb|CBY81269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
influenzae F3031]
Length = 437
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 185/404 (45%), Gaps = 66/404 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRTATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+ H G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLAHH-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVAN 330
K +LLGG K FG GV + K S +
Sbjct: 336 IEGKLHLLLGGDGKGADFSELAELINQPHIICYCFGRDGVQLAK------FSSQSYLFET 389
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 390 MEQAIAFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|344941238|ref|ZP_08780526.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacter
tundripaludum SV96]
gi|344262430|gb|EGW22701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacter
tundripaludum SV96]
Length = 479
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 187/374 (50%), Gaps = 50/374 (13%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+ +G +++S++D FA V I+A++G+NGKSTV T +G+M G++ VGGNLG
Sbjct: 114 IANGSKIVSDIDLFACSV---DAPIVAISGSNGKSTVTTMLGEMAKATGMKVGVGGNLGT 170
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P A +AL + Q+ V+E+SS+Q+E + VLN++ DHL+RH M
Sbjct: 171 P----ALDLLALNA-----QLYVLELSSFQLE-RTSALNAVAATVLNVSADHLDRHVDMA 220
Query: 141 NYALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAK 195
YA K +F ++N P ++ K F++ F G K DTE
Sbjct: 221 EYAREKQRVFRGDGVMVINADD---PVVYAMRDDGRKVFTFSINKKADFYLGYKDDTEYL 277
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ L + + GRHN NA A + + G+D + + + I +
Sbjct: 278 MHD-------EACLMPLAELPLEGRHNAANALAALALGVAV--GLDEQIMCDALRIFKGL 328
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------- 304
HRMQ V +I+GVTWV+DSKATN+ A C + K +++ GG AK
Sbjct: 329 SHRMQRVA-EIRGVTWVNDSKATNIGA-CVAALQGYARKVILIAGGDAKGADMNELTPAI 386
Query: 305 --FGYSGVLIWKT--LVNNGLS--IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
S VL+ K L+ L+ +P ++ NM AV A +A G++++LSP CAS D
Sbjct: 387 KEKAKSVVLMGKDAGLIKQALNGCVPVYSADNMAQAVEIAAGLADVGESVLLSPACASLD 446
Query: 359 EFRNFEHRGMVFQE 372
+++N++ RG F +
Sbjct: 447 QYKNYQDRGEKFTK 460
>gi|260589604|ref|ZP_05855517.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
hansenii DSM 20583]
gi|260540172|gb|EEX20741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
hansenii DSM 20583]
Length = 457
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 193/396 (48%), Gaps = 64/396 (16%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
Q+KA G+ V E++ A Q+ ++ LA+TGTNGK+T +G+++
Sbjct: 91 QIKAAGIP--------VWGEIELAYQMSAGTV--LAITGTNGKTTTTALLGEIMKAYADS 140
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
FV GN+GNP ++AA L ++ + VA E+SS+Q+E + F P VS +LN+T D
Sbjct: 141 VFVVGNIGNPYTDAA-----LSMTEDSYTVA--EISSFQLETIDT-FAPKVSAILNITED 192
Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------- 182
HL RH TM+ Y K + ++ +L + ++ L G R +
Sbjct: 193 HLNRHHTMEEYIRVKELITANQTKEDYCILNYEDEVLRAF--GERCPAKTVFFSSERKLE 250
Query: 183 -GAF-PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
GAF G I + T + E+ G +K++G+HNY N V A S + GV
Sbjct: 251 KGAFLDGDAICLKTDTETLEIVKTG--------ELKILGKHNYEN--VMAASAMAYYTGV 300
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
VE ++ I R HR++ V +I G+ + +DSK TN +A G+ + ++ +L+G
Sbjct: 301 PVEVIHKAITEFRAVAHRIEFVD-EINGIAYYNDSKGTNPDAAIKGIQAM--NRPTLLIG 357
Query: 301 G----QAKF-----GYSGVLIWKTLVNNGLS-----------IPCFAVANMKDAVNHARR 340
G ++ + + G + + L+ + N+++AV+ +
Sbjct: 358 GGYDKESSYEEWIQSFDGKVKYLVLIGQTREKIQEVAHKCGFVNTILADNLEEAVSMCTQ 417
Query: 341 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
A GDA++LSP CAS+ +F N+E RG F+E ++
Sbjct: 418 KAEKGDAVLLSPACASWGQFDNYEQRGDKFKEYVYA 453
>gi|449143733|ref|ZP_21774556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
mimicus CAIM 602]
gi|449080731|gb|EMB51642.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
mimicus CAIM 602]
Length = 440
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/412 (27%), Positives = 184/412 (44%), Gaps = 75/412 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATPEIQQVLATGIPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 213
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------------LQLHNMKVMG 219
N + FP + T E PA V++ L + ++G
Sbjct: 214 ----NADDVQTFPDHAAHLQVVTFGVEQPAQFSVAEHQGREYLFARDNAVLASSELSLVG 269
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 324
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA-------- 329
TN+ +T L LK + LL G G + L + CF V
Sbjct: 325 TNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVFATLPLQLCCFGVDGDKFMPLH 384
Query: 330 -------NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ V R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 385 PSARFYDSMESIVRSIRPELKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|255066179|ref|ZP_05318034.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
ATCC 29256]
gi|255049724|gb|EET45188.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
ATCC 29256]
Length = 445
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 182/381 (47%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL---------------LG 300
PHR++ + + GV ++DDSK TN+ AT + L+ VIL L
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALA 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L +G + A +++AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQTAYAQAEAGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFIE-AFKA 444
>gi|37678796|ref|NP_933405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
vulnificus YJ016]
gi|60390522|sp|Q7MNV3.1|MURD_VIBVY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|37197537|dbj|BAC93376.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
YJ016]
Length = 442
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 167/366 (45%), Gaps = 73/366 (19%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N G++ +GGN+G P AL + + ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP---------ALDLLEQEVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVN----- 155
E+SS+Q+E + LNL+ DH++R++ M +Y K +F H +VN
Sbjct: 161 ELSSFQLETTTSLHL-VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNRDDRQ 219
Query: 156 ---------TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L L+ FG+ + H+ +W+ + + AS E
Sbjct: 220 TYPETSHGQQSLALVTFGSDDKEFGVMSHQGE-SWL------SYNQQPILASRE------ 266
Query: 207 VSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+K++G+HN N V A L+ G+D + AL S + HR Q+V
Sbjct: 267 --------LKLVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGL----THRCQVV-A 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSI 323
D +G+ WV+DSKATNL +T L L K +L+GG K G + L L +
Sbjct: 314 DNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLVGGDGK-GADFSPLKPILAQLNLQL 372
Query: 324 PCFAV---------------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
CF M+D + H +GD ++LSP CASFD+F NF RG
Sbjct: 373 CCFGADGDQFMPLHASATRFERMEDVIEHISPQLQSGDMVMLSPACASFDQFSNFMARGD 432
Query: 369 VFQELA 374
F ELA
Sbjct: 433 RFAELA 438
>gi|213963298|ref|ZP_03391555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
sputigena Capno]
gi|213954160|gb|EEB65485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
sputigena Capno]
Length = 447
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 190/383 (49%), Gaps = 59/383 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G R++SE++FA++ S+ I+ +TG+NGK+T Q+ G++ +GGN+G
Sbjct: 84 EKGIRIISEIEFASEYT-HSL-IVGITGSNGKTTTTLLTHQIFKDAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI----------GAF---PGV 188
Y +K + + + + + E ++ H + I GAF +
Sbjct: 193 YIASKFRIAMNQTENDYLIYDADDPVIEEWLQNHILKVKLIPFSIEKELPYGAFLKDNKI 252
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
I E +TA +++ + + + G+HN N A SV + + +L +
Sbjct: 253 HIMLENQTAE--------TTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRDS 302
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---- 304
++ + HR++ V + ++GVT+V+DSKATN+ + L +K V ++GGQ K
Sbjct: 303 LKGFKGVDHRLEEV-KVVEGVTYVNDSKATNVNSVYFALDTIKT-PIVWIVGGQDKGNDY 360
Query: 305 ----------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
G I ++ N+G + +M +AV A++ AT GD +
Sbjct: 361 NALLPYVHEKVKAIVCLGVDNEPILRSFSNSGKEM--IETQSMDEAVRIAKKFATEGDTV 418
Query: 349 VLSPGCASFDEFRNFEHRGMVFQ 371
+LSP CASFD F+++E RG F+
Sbjct: 419 LLSPACASFDLFKSYEDRGDQFK 441
>gi|416181866|ref|ZP_11611807.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M13399]
gi|416212080|ref|ZP_11621685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M01-240013]
gi|325134887|gb|EGC57520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M13399]
gi|325144959|gb|EGC67242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
meningitidis M01-240013]
Length = 445
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L IG+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAIGLSREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG--------------- 300
PHR++ + + GV ++DDSK TN+ AT + L+ VIL G
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALV 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L GL++ A + +AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLGEAVQTAYAQAEAGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFIE-AFKA 444
>gi|294670612|ref|ZP_06735490.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307651|gb|EFE48894.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 445
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 182/381 (47%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A V+ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADVVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGG----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + ++S ++ + G H + A V A L G+ EAL I+ +
Sbjct: 253 TGRLKQGNEDLIST---QDIPLQGLH--NAANVMAAVALCEAAGLPREALLEHIKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL---------------LG 300
PHR++ + + GV ++DDSK TN+ AT + L+ VIL L
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALA 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L +G + A +++AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQKAYTQAEAGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFIE-AFKA 444
>gi|239907965|ref|YP_002954706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
magneticus RS-1]
gi|239797831|dbj|BAH76820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
magneticus RS-1]
Length = 442
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 173/370 (46%), Gaps = 56/370 (15%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G +V+SEL+ A+ P I+AVTG+NGK+T V + +L G F GGN+G PLS+
Sbjct: 99 GAQVVSELELASWFTPE--PIVAVTGSNGKTTTVMLISALLEAAGRRVFTGGNIGTPLSD 156
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
H + S +P V V+EVSS+Q+++ K F P V+V+LN +HL+ H + Y
Sbjct: 157 ---HVL---SEEPA-DVVVLEVSSFQLQL-TKTFRPKVAVLLNFAANHLDWHADLDEYLD 208
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F+ ++ ++ L + + G F A + + A + F P
Sbjct: 209 AKLRIFATQRPDDTAIV---SEELRDLLSGRPFTRAGVTWY--------AAASGFLCP-- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
++ G HN N A L+ GVD++ PHR+QI+
Sbjct: 256 -----------RLAGVHNQANMEAAYLACRAF--GVDIKLARQVFADFVPAPHRIQIIG- 301
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV---LIWKTLVNNGL 321
+ GV +VDDSKAT + A + +L GG K G L+ + +V GL
Sbjct: 302 EKGGVLFVDDSKATTVTAMEAAIRSFD-RPVRLLCGGVWKGGDLEAMLPLVKEKVVAVGL 360
Query: 322 --------------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
+P + +AV A GDA++LSPG +SFD++ N++ RG
Sbjct: 361 FGGSREVFETAFAGVVPVRYAPTLAEAVARIYADAAPGDAVLLSPGTSSFDQYPNYKARG 420
Query: 368 MVFQELAFSA 377
FQ+ AF+A
Sbjct: 421 RDFQQ-AFAA 429
>gi|262170650|ref|ZP_06038328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
MB-451]
gi|261891726|gb|EEY37712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
MB-451]
Length = 440
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/412 (27%), Positives = 184/412 (44%), Gaps = 75/412 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 213
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------------LQLHNMKVMG 219
N + FP + T E PA V++ L + ++G
Sbjct: 214 ----NADDVQTFPDHAAHLQVVTFGVEQPAQFSVAEHQGREYLFARDNAVLASSELSLVG 269
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 324
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA-------- 329
TN+ +T L LK + LL G G + L + CF V
Sbjct: 325 TNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVFATLPLQLCCFGVDGDKFMPLH 384
Query: 330 -------NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ V R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 385 PSARFYDSMESIVRSIRPELKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|229846167|ref|ZP_04466279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 7P49H1]
gi|229811171|gb|EEP46888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae 7P49H1]
Length = 437
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 187/407 (45%), Gaps = 72/407 (17%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRTATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGN-QHLNE 170
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG ++ E
Sbjct: 170 LKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYH---NAKVGVLNNEDSLTFGEGENQAE 226
Query: 171 AIKGHRFNLA--WIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228
I N A W+ G + A EV L ++GRHNY N +
Sbjct: 227 QIVSFAENGADYWLKTENG----KQYLMAKDEVI-------LPCEEATLVGRHNYMN--I 273
Query: 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLM 288
A + L +G++++A+ + + + HR Q+ H+ GV W++DSKATN+ +T L
Sbjct: 274 LAATALAQAVGINLDAIRTALRQFKGLDHRFQLAHQ-ANGVRWINDSKATNVGSTVAALA 332
Query: 289 DLKGH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFA 327
L K +LLGG K FG G + K LS +
Sbjct: 333 GLYVEGKLHLLLGGDGKGADFSELADLINQPQIICYCFGRDGAQLAK------LSSQSYL 386
Query: 328 VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 387 FETMEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTRLA 433
>gi|417926599|ref|ZP_12569996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna SY403409CC001050417]
gi|341588967|gb|EGS32337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna SY403409CC001050417]
Length = 441
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 184/366 (50%), Gaps = 32/366 (8%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+S+L+ A Q I IKI+A+TGTNGK+T + + +MLN G +A GN+G +
Sbjct: 83 EVVSDLELA-QRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGMLWEI 141
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ S K F V+E SS+Q+E K+F P S ++N+TPDH++ H +M+NY K
Sbjct: 142 YN-----SDKDTF--FVIECSSFQLE-STKHFKPQYSCIINITPDHIDWHGSMQNYVNAK 193
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + +L +++ E K + N+ I VK + K S
Sbjct: 194 KNVLKNQDENCYTVLNANDEYYEECKKFTKANVYDISTSKNVKRGSFIKDNSIYFSDSDC 253
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L ++K++G HNY N L IG++ +++ T+ HR++ V RD+
Sbjct: 254 DKIIDLKDVKLIGYHNYQNVLFCV--TLAKLIGINDDSIRETLMSFSGVEHRLEFV-RDL 310
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------FGYSGVLIWKTLVNNG 320
GV + +DSK TN++A+ + + +IL GG K F +G +K L+ G
Sbjct: 311 SGVKYYNDSKGTNVDASVKAIESFDKN-VIILAGGYDKKVSLDNFFIAGKDKFKALILMG 369
Query: 321 LSIPCFA-------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
+ F V +MK AV A ++A +GD ++LSP AS+ + N+E RG
Sbjct: 370 QTRDLFEQKAKEYGFKNIYLVDDMKQAVTKANKIAESGDVVLLSPASASWGMYNNYEERG 429
Query: 368 MVFQEL 373
F++L
Sbjct: 430 NEFKDL 435
>gi|256821912|ref|YP_003145875.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kangiella
koreensis DSM 16069]
gi|256795451|gb|ACV26107.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
DSM 16069]
Length = 444
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 180/379 (47%), Gaps = 55/379 (14%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+SG V+ +++ AQ ++ ++A+TG+NGKSTV VG+++N G +A VGGN+G P
Sbjct: 89 ESGVSVIGDIELFAQA--NTLPVIAITGSNGKSTVTDLVGELINASGKKALVGGNIGVP- 145
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
AL K + +E+SS+Q+E + P + VLN++ DHL+R+K + Y
Sbjct: 146 --------ALDLLKLEGDYVALELSSFQLE-STRSLEPVAATVLNVSEDHLDRYKNYQEY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGVKIDTEAKTASF 199
K +++ T L N + A G RF L+ +D E T
Sbjct: 197 IDAKRSIYAK-ARTCLVNADDENTWIKSAESGQNILRFGLSNNSDKIDWAVDFETCTIMH 255
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP---- 255
+ + L+L + + G HN N AVA L L VD+ + T +L
Sbjct: 256 DGNEI-----LKLDELTLQGIHNALNVAVA----LAL---VDIAEIELTQAVLDAAKSYQ 303
Query: 256 --PHRMQIVH-RDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKFGYSG 309
PHR Q+V +D G+T+++DSKATN+ AT + + G +++ GG AK
Sbjct: 304 GLPHRSQLVAIKD--GITFINDSKATNVGATVAAIHSFEPQFGKNIILIAGGDAKGADLS 361
Query: 310 VL------IWKTLVNNGLSIPCFA---------VANMKDAVNHARRMATNGDAIVLSPGC 354
L K +V G P A V+N+++AV A A GD ++LSP C
Sbjct: 362 SLQEIIKETVKAVVCFGKDAPAIAKLAPAKTQLVSNLEEAVRIAYEQAQKGDLVLLSPAC 421
Query: 355 ASFDEFRNFEHRGMVFQEL 373
AS D F N+ RG F L
Sbjct: 422 ASLDMFANYMQRGEQFAHL 440
>gi|27364041|ref|NP_759569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
vulnificus CMCP6]
gi|30316015|sp|Q8DEK8.1|MURD_VIBVU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|27360158|gb|AAO09096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
CMCP6]
Length = 442
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 168/366 (45%), Gaps = 73/366 (19%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N G++ +GGN+G P AL + + ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP---------ALDLLEQEVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVN----- 155
E+SS+Q+E + + LNL+ DH++R++ M +Y K +F H +VN
Sbjct: 161 ELSSFQLETTSSLHL-VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNRDDRQ 219
Query: 156 ---------TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L L+ FG+ + H+ +W+ + + AS E
Sbjct: 220 TYPETSHGQQSLALVTFGSDDKEFGVISHQGE-SWL------SYNQQPILASRE------ 266
Query: 207 VSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+K++G+HN N V A L+ G+D + AL S + HR Q+V
Sbjct: 267 --------LKLVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGLT----HRCQVV-A 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSI 323
D +G+ WV+DSKATNL +T L L K +L+GG K G + L L +
Sbjct: 314 DNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLVGGDGK-GADFSPLKPILAQLNLQL 372
Query: 324 PCFAV---------------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
CF M+D + H +GD ++LSP CASFD+F NF RG
Sbjct: 373 CCFGADGDQFMPLHASATRFERMEDVIEHISPQLQSGDMVMLSPACASFDQFSNFMARGD 432
Query: 369 VFQELA 374
F ELA
Sbjct: 433 RFAELA 438
>gi|262166446|ref|ZP_06034183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM223]
gi|262026162|gb|EEY44830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM223]
Length = 440
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/412 (27%), Positives = 185/412 (44%), Gaps = 75/412 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATPEIQQVLATGIPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 213
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------------LQLHNMKVMG 219
N + FP + T E+PA V++ L + ++G
Sbjct: 214 ----NADDMQTFPDHAAHLQVVTFGVELPAQFSVAEHQGREYLFARDNAVLASSELSLVG 269
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 324
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA-------- 329
TN+ +T L LK + LL G G + L + CF V
Sbjct: 325 TNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPIFATLPLQLCCFGVDGDKFMPLH 384
Query: 330 -------NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 385 PSARFYDSMESIIRSIRPELKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|345874734|ref|ZP_08826534.1| hypothetical protein l11_06150 [Neisseria weaveri LMG 5135]
gi|343970093|gb|EGV38291.1| hypothetical protein l11_06150 [Neisseria weaveri LMG 5135]
Length = 445
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 178/377 (47%), Gaps = 43/377 (11%)
Query: 23 QSGKRVMSELDFAA-QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
QSG V+ +++ A ++ +S KI+A+TG+NGK+TV + VG + G++ V GN+G P
Sbjct: 89 QSGGVVLGDVEILAHELKGKSDKIIAITGSNGKTTVTSLVGYLCEKCGLDTVVAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA V V+E+SS+Q+E + + +VVLN++ DHL+R+ + +
Sbjct: 149 VLEAYMQ-----RGGKAADVWVLELSSFQLENTD-HLAADAAVVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA K +F L + + A+K ++ W T+ +T +
Sbjct: 203 YAHAKDKIFRGSGVQVLN----ADDAMCRAMKRPNRDIKWFSLEGQADYWTDVQTGRLKA 258
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G L + + G HN N A +G+ L I+ + PHR++
Sbjct: 259 ---GANDLLDTAAIPLQGLHNAANVLAALALCEA--VGLPRTELLQHIQTFKGLPHRVEK 313
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V G+T++DDSK TN+ AT + L+ V++ GGQ K
Sbjct: 314 VGEK-NGITFIDDSKGTNVGATAAAIAGLQ-SPLVLIAGGQGKGQDFTPLRAALHNKARA 371
Query: 305 ---FGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
G LI + L G+ I C A +++AV A ++A +GD ++LSP CASFD F
Sbjct: 372 VLLIGEDAPLIRRDLAGCGVDLIDC---ATLEEAVQTAYKLAQSGDIVLLSPACASFDMF 428
Query: 361 RNFEHRGMVFQELAFSA 377
+ HR VF E AF A
Sbjct: 429 EGYAHRAQVFVE-AFEA 444
>gi|406672326|ref|ZP_11079552.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bergeyella
zoohelcum CCUG 30536]
gi|405588014|gb|EKB61732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bergeyella
zoohelcum CCUG 30536]
Length = 451
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 194/382 (50%), Gaps = 41/382 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA L + G R+ SE++FAA+ + KI+A+TG+NGK+T + + +L + G+
Sbjct: 84 KAGILQKIQAKGIRLSSEIEFAAEFT--NAKIIAITGSNGKTTTTSLIYHILKNAGLHVG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDH 132
+GGN+G ++ + + V+EVSS+Q+ +I N F P ++++LNL+PDH
Sbjct: 142 LGGNIGTSFAKQV--------ADENYDYFVLEVSSFQLDDIQN--FQPYIALLLNLSPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+++ ++YAL K + + N + + ++ +E +K + K+D
Sbjct: 192 LDQYNYNYEDYALAKLRITENQKNHQFFIYNHEDEMTHELLKKIEVKAKTLPFSLNEKLD 251
Query: 192 TEAKTASFEVPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
E A+ + V + + ++++ + ++G+HN N + A S++G + + E L + +
Sbjct: 252 -EGAYATVDKIFVKLEEEFSMKINELPLVGKHNVAN--ILAASMVGKLLHISDENLQNAL 308
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG 309
R HR+++ +I GV +++DSKATN+ A L + V + GG K G
Sbjct: 309 MTFRAVEHRLELF-AEIDGVKYINDSKATNVNAAYYALESMTS-PTVWIAGGVDK-GNDY 365
Query: 310 VLIWKTLVNNGLSIPC-------------------FAVANMKDAVNHARRMATNGDAIVL 350
I + ++ C ++ + +++ V A+ +A NGD ++L
Sbjct: 366 TEIEDLVKEKVKAVICLGKDNEKIIEFFQDKMKLIYSTSTLEECVKIAKSIAQNGDTVLL 425
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CASFD F N+E RG F++
Sbjct: 426 SPCCASFDLFENYEDRGEKFKK 447
>gi|219681589|ref|YP_002467975.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. 5A (Acyrthosiphon pisum)]
gi|219682147|ref|YP_002468531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. Tuc7 (Acyrthosiphon pisum)]
gi|257471275|ref|ZP_05635274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. LSR1 (Acyrthosiphon pisum)]
gi|384226027|ref|YP_005617190.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|384226562|ref|YP_005618313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. JF98 (Acyrthosiphon pisum)]
gi|384227083|ref|YP_005618833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|414562578|ref|YP_005617769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. JF99 (Acyrthosiphon pisum)]
gi|254766040|sp|B8D916.1|MURD_BUCA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|254766041|sp|B8D7C1.1|MURD_BUCAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|219621880|gb|ACL30036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|219624432|gb|ACL30587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|311085959|gb|ADP66041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|311086534|gb|ADP66615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|311087114|gb|ADP67194.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. JF99 (Acyrthosiphon pisum)]
gi|311087659|gb|ADP67738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. JF98 (Acyrthosiphon pisum)]
Length = 440
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 197/379 (51%), Gaps = 63/379 (16%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++S+++ ++ + + I+++TGTNGKSTV T + ++ G +AF+GGN+G P+ E
Sbjct: 90 GIEIISDIELFSREV--TCPIISITGTNGKSTVATMIEKIAKKSGYKAFLGGNIGVPVLE 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT-VSVVLNLTPDHLERHKT-MKNY 142
+ + ++E+SS+Q+E N + + ++V+LN++ DH+ R+ + Y
Sbjct: 148 IL---------DKEADLYIIELSSFQLE--NTFNLKSKIAVILNISEDHINRYPNGFQQY 196
Query: 143 ALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
TK +++ ++N+ N + +++ H N WI +F + D + S
Sbjct: 197 KNTKLSVYNQAEICIINS--------NDKIEKSLI-HSKNKKWI-SFGTNRSDYRICSKS 246
Query: 199 FEVPAVGVVSQLQLHNMKVM--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT-- 254
+ P + ++ L+ +++ G HNY+N V+ L + + N I +L++
Sbjct: 247 ND-PILFFKNKKILNTSEILLYGYHNYNNILVS----LAISDAMQFPR-NDAINVLKSFS 300
Query: 255 -PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVL- 311
PHR QI+ + +GV W++DSK+TN+ +T L +K + +LLGG +K +L
Sbjct: 301 NLPHRFQIIKNE-KGVRWINDSKSTNVNSTQVALNSIKTTGTIRLLLGGDSKSANFNILK 359
Query: 312 -IWKTLVNNGLSIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGC 354
I++TL + I CF V N+K AV + +GD ++LSPGC
Sbjct: 360 NIFRTL---KIKIYCFGRDGIKLSKICEKKSIYVENLKKAVILISKQVKSGDTVLLSPGC 416
Query: 355 ASFDEFRNFEHRGMVFQEL 373
+S D+F NFE RG +F +L
Sbjct: 417 SSLDQFSNFEERGNLFIKL 435
>gi|258625125|ref|ZP_05720042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM603]
gi|258582576|gb|EEW07408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio mimicus
VM603]
Length = 440
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/412 (27%), Positives = 184/412 (44%), Gaps = 75/412 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATPEIQQVLAAGLPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++ VGGN+G P AL P+ ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKTAVGGNIGVP---------ALDLISPEVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 213
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------------LQLHNMKVMG 219
N + FP + T E PA V++ L + ++G
Sbjct: 214 ----NADDVQTFPDHAAHLQVVTFGVEQPAQFSVAEHQGREYLFARDNAVLASSELSLVG 269
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G+++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 270 RHNVANVLTVLALLDSAGVNVRLALDALKSYTGLT----HRCQVV-ADNHGIKWVNDSKA 324
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA-------- 329
TN+ +T L LK + LL G G + L + CF V
Sbjct: 325 TNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVFATLPLQLCCFGVDGDKFMPLH 384
Query: 330 -------NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 385 PSARFYDSMESIIRSIRPELKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|392399186|ref|YP_006435787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flexibacter
litoralis DSM 6794]
gi|390530264|gb|AFM05994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flexibacter
litoralis DSM 6794]
Length = 471
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 189/382 (49%), Gaps = 57/382 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA++ + + KI+A+TGTNGK+T +L + G+ + GN+G + A
Sbjct: 104 VVSEIEFASRFV--TGKIIAITGTNGKTTTALLTYHLLKNAGLSVCLVGNIGKSFAREAI 161
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
+ ++ V+EVSS+Q++ ++ F P V+V+LN+TPDHL+R+ ++NY +K
Sbjct: 162 --------EDEYDYYVIEVSSFQLDDIDE-FRPHVAVLLNITPDHLDRYNYQIENYVNSK 212
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE------ 200
+ + N + N+ E++K RF+ G + I + + S +
Sbjct: 213 FKINENQSNKDFFIY---NEEDIESLKYIRFH-RLAGRMLPINISKQKEYLSLQNKLRIS 268
Query: 201 -VPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL--SVLGLDIGVDVEALNSTIEILRTPPH 257
PA + + + ++ + G HN N A A + ++ L ++ L S + PH
Sbjct: 269 ATPAQML--DIPISDLPLQGAHNLLNIAAAGMIAQIIRLSDKQIIKGLKS----FKNAPH 322
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLV 317
R++ + + I+G+T+++DSKATN++A L + +I + G G +I ++
Sbjct: 323 RLEKI-KTIKGITFINDSKATNVDAVSYALESF--DRSLIWIVGGVDKGNEYEIIEGSVK 379
Query: 318 NNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFD 358
N I C N MK A+ A +A N D ++LSP CASFD
Sbjct: 380 KNVRVIVCLGKDNKKLTTFFKGKVSEIRETNSMKKAIEIAFSLAENEDIVLLSPACASFD 439
Query: 359 EFRNFEHRGMVF----QELAFS 376
F+N+E RG F QELA +
Sbjct: 440 LFKNYEDRGDQFRRYVQELALN 461
>gi|331083028|ref|ZP_08332147.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330399765|gb|EGG79426.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 457
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 193/396 (48%), Gaps = 64/396 (16%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
Q+KA G+ V E++ A Q+ ++ LA+TGTNGK+T +G+++
Sbjct: 91 QIKAVGIP--------VWGEIELAYQMSAGTV--LAITGTNGKTTTTALLGEIMKAYADS 140
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
FV GN+GNP ++AA L ++ + VA E+SS+Q+E + F P VS +LN+T D
Sbjct: 141 VFVVGNIGNPYTDAA-----LSMTEDSYTVA--EISSFQLETIDT-FAPKVSAILNITED 192
Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------- 182
HL RH TM+ Y K + ++ +L + ++ L G R +
Sbjct: 193 HLNRHHTMEEYIRVKELITANQTKEDYCILNYEDEVLRAF--GERCPAKTVFFSSERKLG 250
Query: 183 -GAF-PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
GAF G I + T + E+ G +K++G+HNY N V A S + GV
Sbjct: 251 KGAFLDGDAICLKTDTETLEIVKTG--------ELKILGKHNYEN--VMAASAMAYYTGV 300
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
VE ++ I R HR++ V +I G+ + +DSK TN +A G+ + ++ +L+G
Sbjct: 301 PVEVIHKAITEFRAVAHRIEFVD-EINGIAYYNDSKGTNPDAAIKGIQAM--NRPTLLIG 357
Query: 301 G----QAKF-----GYSGVLIWKTLVNNGLS-----------IPCFAVANMKDAVNHARR 340
G ++ + + G + + L+ + N+++AV+ +
Sbjct: 358 GGYDKESSYEEWIQSFDGKVKYLVLIGQTREKIQEVAHKCGFVNTILADNLEEAVSICTQ 417
Query: 341 MATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
A GDA++LSP CAS+ +F N+E RG F+E ++
Sbjct: 418 KAEKGDAVLLSPACASWGQFDNYEQRGDKFKEYVYA 453
>gi|417825623|ref|ZP_12472211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE48]
gi|422308334|ref|ZP_16395485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1035(8)]
gi|340047108|gb|EGR08038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE48]
gi|408617803|gb|EKK90908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1035(8)]
Length = 440
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 188/408 (46%), Gaps = 67/408 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 117
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N +G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 118 GKSTVTDLSGVLANAVGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 168
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M++Y K +F H +VN P H
Sbjct: 169 TTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 227
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 228 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 273
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 274 ANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 328
Query: 282 ATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV------------- 328
+T L LK + LL G G + L + + CF V
Sbjct: 329 STLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSAR 388
Query: 329 --ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 389 FYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|334144431|ref|YP_004537587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thioalkalimicrobium cyclicum ALM1]
gi|333965342|gb|AEG32108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thioalkalimicrobium cyclicum ALM1]
Length = 448
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 182/397 (45%), Gaps = 72/397 (18%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L+ T L Q G ++ +++ A+ S I+ +TG+NGKSTV + Q+L+ G +A
Sbjct: 72 LRQTWLQVFKQKGIEIIGDIELFARAA--SAPIIGITGSNGKSTVTSLTAQLLSAAGYKA 129
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS-VVLNLTPD 131
+GGN+G P + L + V V+E+SS+Q++ Y TV+ VLN+ D
Sbjct: 130 GLGGNIGKP-------ALDLLKENQDYDVFVLELSSFQLD--TTYSLHTVAATVLNICED 180
Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLP-----------------FGNQHLNEAIKG 174
HL+R+ M Y +K ++ +T+L ++P FG QH
Sbjct: 181 HLDRYDGMDAYIQSKNTIYQ---DTELAVMPLEEPTHFWVPGITPRYYFGLQH------- 230
Query: 175 HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234
R + W G+ ID + F A G + + +K+ H NA A V
Sbjct: 231 PRNSSDW-----GLVIDKQG----FRYLARGEQLIMPVQELKLQAPHQLLNALAALALVD 281
Query: 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH- 293
+ + E + + PHR + V ++ GVTW++DSK TN+ AT T + L +
Sbjct: 282 --EFAIPPEIIRHVLAEFTGLPHRTEWV-AEMNGVTWINDSKGTNVGATLTAINSLGSNV 338
Query: 294 ---KCVILLGGQAK-------------FGYSGVLIW----KTLVNNGLSIPCFAVANMKD 333
K V+L GG AK F + +L K +PC + + +
Sbjct: 339 APGKLVLLAGGDAKGADMAPLAAPLAQFARAAILYGRDADKLYQAWSADLPCHRLETLDE 398
Query: 334 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
AV A +A GDA++LSP CAS D+F N++HRG F
Sbjct: 399 AVVLAASLAKAGDAVLLSPACASLDQFTNYQHRGQHF 435
>gi|260767159|ref|ZP_05876102.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
CIP 102972]
gi|260617833|gb|EEX43009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio furnissii
CIP 102972]
Length = 439
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 162/354 (45%), Gaps = 52/354 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N GI VGGN+G P A +A P+ ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANAAGIATAVGGNIGVP----ALDLLAQPA-----ELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + + LNL+ DH++R+ M Y K +F H +VN
Sbjct: 161 ELSSFQLETTSS-LALKAAAFLNLSEDHMDRYDGMAGYRQAKLRIFEHAQTAVVNAD--- 216
Query: 161 LPFGNQHLNEAIKGH--RFNLAWIGAFPGVKID-TEAKTASFEVPAVGVVSQLQLHNMKV 217
Q +A G RF L F + D E A+ EV L ++ +
Sbjct: 217 ---DTQTYPDAYSGRTVRFGLEQPAEFTTAQHDGKEVLLANGEV-------VLPTSDLSL 266
Query: 218 MGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
+GRHN N +A L G++ + AL S + HR Q+V D QG+ WV+DS
Sbjct: 267 VGRHNVANVLTVLALLDAAGVNYTNALPALKSYTGLT----HRCQVV-ADNQGIKWVNDS 321
Query: 276 KATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA-------- 327
KATN+ +T L L + + LL G G + L L + CF
Sbjct: 322 KATNVASTLAALSGLTLNGTLYLLVGGVGKGADFTPLKPVLETLPLMLCCFGRDGDQFMP 381
Query: 328 -------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ + R GD ++LSP CASFD+F+NF RG VF ELA
Sbjct: 382 LHASAQRFDTMEAIIASIRPQLKAGDMVLLSPACASFDQFKNFMARGDVFAELA 435
>gi|224541556|ref|ZP_03682095.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
15897]
gi|224525523|gb|EEF94628.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Catenibacterium
mitsuokai DSM 15897]
Length = 446
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 184/380 (48%), Gaps = 51/380 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V +E++ +V + +AVTGTNGK+T VT + ++L G +A + GN G
Sbjct: 87 LKERGIPVYTEIELGYKVAKKQ-HYIAVTGTNGKTTTVTLIYEILKAAGRKAHICGNYGI 145
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P E + VVE+S++Q+ I + F P V+ VLNLTPDHL+ ++
Sbjct: 146 PYCEVVLNEHLYEEEGHDI---VVEMSNFQL-IDIEEFKPEVATVLNLTPDHLDYMDSLD 201
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
Y +K ++ + L F N +E ++ +++ +P ++ +F
Sbjct: 202 EYYASKMRIYMNQDEKDL----FINNSDDETLQ------SYLAKYP-----VPSRIETFS 246
Query: 201 VPAVGVVS------------QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
V G V + +K++G HN N VA + +GV +++++ T
Sbjct: 247 VKGQGDVELKDNAIYYKGQKVIDRDEIKIVGLHNVANMMVAIAACAS--VGVSLDSIHDT 304
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGY 307
+ + HR++ V R++ GV + +DSK TN +A + + ++L+GG K
Sbjct: 305 LAAFKGVEHRIEFV-RELDGVRYYNDSKGTNTDAAVIAIKAFE-KPVILLMGGHEKNLDL 362
Query: 308 SGVL----IWKTLVNNGLSIPCFA----------VANMKDAVNHARRMATNGDAIVLSPG 353
V + KTL+ G + F+ V +MKDA+ A+ +A GD ++LSP
Sbjct: 363 KDVREQNPLIKTLICFGETKERFSKDMAHPHTIVVDHMKDAILKAKEIAKEGDVVLLSPS 422
Query: 354 CASFDEFRNFEHRGMVFQEL 373
+SFDEF ++ RG VF+++
Sbjct: 423 TSSFDEFHSYVERGNVFKDI 442
>gi|410465721|ref|ZP_11318936.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
magneticus str. Maddingley MBC34]
gi|409981237|gb|EKO37833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
magneticus str. Maddingley MBC34]
Length = 442
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 171/365 (46%), Gaps = 55/365 (15%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G +V+SEL+ A+ P I+AVTG+NGK+T V + +L G F GGN+G PL++
Sbjct: 99 GAQVVSELELASWFTPE--PIVAVTGSNGKTTTVMLISALLEAAGRRVFTGGNIGTPLAD 156
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
H + S +P V V+EVSS+Q+++ K F P V+V+LN +HL+ H + Y
Sbjct: 157 ---HVL---SEEPA-DVVVLEVSSFQLQL-AKTFRPKVAVLLNFAANHLDWHADLDEYLD 208
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F+ ++ ++ L + + G F A + + A + F P
Sbjct: 209 AKLKIFAAQRPDDTAIV---SEELRDLLGGRPFTRAGVTWY--------AAASGFLCP-- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
++ G HN N A L+ GVD++ PHR+QI+
Sbjct: 256 -----------RLAGVHNQANMEAAYLACRAF--GVDIDLARQVFADFVPAPHRIQIIG- 301
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV---LIWKTLVNNGL 321
+ GV +VDDSKAT + A + +L GG K G L+ + +V GL
Sbjct: 302 EKGGVLFVDDSKATTVTAMEAAIRSFD-RPVRLLCGGVWKGGDLEAMLPLVKEKVVAVGL 360
Query: 322 --------------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
++P ++ DAV A GDA++LSPG +SFD++ N++ RG
Sbjct: 361 FGGSREVFEAAFAGTVPVSYDPSLADAVARIYADAAPGDAVLLSPGTSSFDQYPNYKARG 420
Query: 368 MVFQE 372
FQ+
Sbjct: 421 RDFQQ 425
>gi|241760241|ref|ZP_04758337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
flavescens SK114]
gi|241319352|gb|EER55817.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
flavescens SK114]
Length = 445
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 182/381 (47%), Gaps = 51/381 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDVFCHAMKRAGREVKWFSLEHKADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL---------------LG 300
PHR++ + + GV ++DDSK TN+ AT + L+ VIL L
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPLRDALA 366
Query: 301 GQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+AK G I + L +G + A +++AV A A GD ++LSP CAS
Sbjct: 367 GKAKGVFLIGVDAPQIRRDL--DGCDLNMTDCATLEEAVQTAYAQAEVGDIVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQELAFSA 377
FD F+ + HR VF E AF A
Sbjct: 425 FDMFKGYAHRSEVFTE-AFKA 444
>gi|365538540|ref|ZP_09363715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
ordalii ATCC 33509]
Length = 439
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 168/353 (47%), Gaps = 50/353 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + G++ VGGN+G P AL + + + V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVLAKAAGVKVAVGGNIGVP---------ALDLLQQEADLYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + + + LNLT DH++R+ M++Y K +F + +VN
Sbjct: 161 ELSSFQLETTSSLKLVSAAF-LNLTEDHMDRYDGMESYRQAKLRIFKYAQAAVVNAD--- 216
Query: 161 LPFGNQHLNEAIKGH--RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+Q + GH RF++ + ID ++ + P L ++++
Sbjct: 217 ---DSQTEPPSFSGHIARFSVEHDADYCTQMIDGKSFLVAKGTPL------LASEELRLV 267
Query: 219 GRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
GRHN N +A L + G+D ++AL S R HR Q+V D GV WV+DSK
Sbjct: 268 GRHNSANVLTVLALLDLAGVDYSSALDALKS----YRGLTHRCQVV-ADNHGVKWVNDSK 322
Query: 277 ATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------- 328
ATN+ +T L L + LL G G L+ L + + CF V
Sbjct: 323 ATNVASTQAALSGLNCQGTLYLLVGGVGKGADFSLLAPILKTLNVKLCCFGVDGGQFMPL 382
Query: 329 -------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
++M++ + + GD ++LSP CASFD+F+NF RG F ELA
Sbjct: 383 HPSAQFYSSMEEIIVSIKPQLRRGDMVMLSPACASFDQFKNFMARGDAFAELA 435
>gi|114798168|ref|YP_761703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hyphomonas
neptunium ATCC 15444]
gi|114738342|gb|ABI76467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hyphomonas
neptunium ATCC 15444]
Length = 471
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 176/382 (46%), Gaps = 72/382 (18%)
Query: 35 AAQVIPRSI--KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP-LSEAAFHCIA 91
A Q +P K++AVTGTNGKST +G +L G +A VGGN+G L AA H A
Sbjct: 106 AVQALPERARPKVVAVTGTNGKSTTTALIGHILKQAGRDARVGGNIGTGVLDLAALHSNA 165
Query: 92 LPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151
+ V+E+SSYQ+++ C VSV +NL+PDHL+RH M Y K +F
Sbjct: 166 ---------IYVLELSSYQLDLVKSLHC-DVSVFMNLSPDHLDRHGGMDGYQAAKMRIFQ 215
Query: 152 HMVNTKLGLLPFGNQHLNE-----AIKGHR--------FNLA-WIGAFPGVKIDTEAKTA 197
+ + + ++ F + + + KG + + L I A G D ++ A
Sbjct: 216 NQTDKNVAVIGFDDIYTQSIAIGLSAKGPQKVVQISSTYTLGKGISAVDGRLYDNQSGKA 275
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F VG + + ++GRHN+ NAA A + L G+D + + + H
Sbjct: 276 EF----VGKLDECP----ALIGRHNHQNAAAAYAACRAL--GLDPATIMAGLRTFPGLAH 325
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG----------------------HKC 295
RM+ V ++ G+ +++DSKATN +A L K +
Sbjct: 326 RMEAVG-ELDGIRFINDSKATNAQAAEQALRSFKNIYWIAGGVPKAEGIAPLASLFPNVT 384
Query: 296 VILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN----GDAIVLS 351
L GQA+ ++ L NG +P ++ AV A R A G I+ S
Sbjct: 385 KAYLIGQAEDAFAATL-------NG-KVPSQVCGSLDRAVEAAYRDAKAAGEPGAVILFS 436
Query: 352 PGCASFDEFRNFEHRGMVFQEL 373
P CASFD+F+++EHRG F+ L
Sbjct: 437 PACASFDQFKDYEHRGDAFRTL 458
>gi|333376752|ref|ZP_08468488.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas mossii
DSM 22836]
gi|332885965|gb|EGK06209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas mossii
DSM 22836]
Length = 444
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 190/384 (49%), Gaps = 62/384 (16%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G ++SE++FA + S K++ +TG+NGK+T + + +L G+ +GGN+G
Sbjct: 84 EKGIPILSEMEFAKRYT--SAKMICITGSNGKTTTTSLIYHILKSAGLNVGLGGNIG--- 138
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-TMK 140
A ++ F V+E+SS+Q+E N Y F ++++LN+TPDHL+R+ M+
Sbjct: 139 -----RSFARQVAEDNFDYYVLELSSFQLE--NMYSFKADIAILLNITPDHLDRYDHDMQ 191
Query: 141 NYALTKCHLFSHMVNTKLGLL----PFGNQHLNEAI-KGHRFNLA--WIG---AFPG--- 187
Y K + + + P ++ + + + KG ++ A +G A+P
Sbjct: 192 KYVDAKMRIVQNQTEEDAFIFWEEDPIVSKEIQKLVSKGKQYTFADHKVGNAIAYPENNE 251
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
+KIDT P + + L + + G HN +N+ + ++ LDI E L
Sbjct: 252 IKIDT---------PKSIFIMKEDL--LALEGTHNLYNSLASGITAKLLDITD--ENLRH 298
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGY 307
++ + HR++ V R ++G+ +++DSKATN+ + L +K K V++LGG K G
Sbjct: 299 SLSDFQGVEHRLEKVAR-VRGIQFINDSKATNVNSCWYALQSMKT-KVVLILGGTDK-GN 355
Query: 308 SGVLIWKTLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAI 348
I + + + ++ V N MKDAV + +A GD +
Sbjct: 356 DYTEIEQLVKDKVRALVFLGVDNSKLHKFFDGKIDNIVDTSSMKDAVEKSYALAQEGDTV 415
Query: 349 VLSPGCASFDEFRNFEHRGMVFQE 372
+LSP CASFD F+N+E RG F+E
Sbjct: 416 LLSPCCASFDLFQNYEDRGDQFKE 439
>gi|346224875|ref|ZP_08846017.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Anaerophaga
thermohalophila DSM 12881]
Length = 450
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 184/376 (48%), Gaps = 56/376 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA + S K++ +TG+NGK+T + ++ G++ + GN+G L+
Sbjct: 90 VISEIEFAGRY--SSAKMIGITGSNGKTTTAIWTYHLMKKGGLDVVLAGNVGTSLARQ-- 145
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
L P F V+E+SS+Q+E + C T +V+ N+TPDHL+R+ +NYA K
Sbjct: 146 ----LLKGDPGF--FVIELSSFQLEGMYDFKCNT-AVITNITPDHLDRYDHRFENYADAK 198
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIK-----GHRFNLAWIGAF-PGVKIDTEAKTAS-- 198
+ ++ + + ++ + +K GHR A+ + G +D + +
Sbjct: 199 FRILNNHDEDSVFVFNAHDKEIMTRLKKMKYPGHRCPFAYDNIYGEGACLDKDKIVVNTP 258
Query: 199 ---FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
F P VS+L L G+HN NA A L+ L G VEA+ +
Sbjct: 259 RQHFTFP----VSELAL-----AGKHNLSNAMAATLAALS--AGTPVEAVKEGLSDFSGV 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG--YSG---- 309
HR++ V ++ G +++DSKATN +A L ++ + VI + G G YS
Sbjct: 308 EHRLENVE-EVNGALYINDSKATNTDAAWFALESME--RPVIWIAGGTDKGNDYSSLEEL 364
Query: 310 ------VLIWKTLVNNGL------SIP-CFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
VLI + N+ L IP ++MK+AV A +MA D ++LSP CAS
Sbjct: 365 AVQKVKVLICLGVDNSKLVSFFKGKIPEIIETSSMKEAVRRAWKMAEPEDVVLLSPACAS 424
Query: 357 FDEFRNFEHRGMVFQE 372
FD F NFEHRG F+E
Sbjct: 425 FDLFENFEHRGRQFKE 440
>gi|374296029|ref|YP_005046220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
clariflavum DSM 19732]
gi|359825523|gb|AEV68296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
clariflavum DSM 19732]
Length = 464
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 177/382 (46%), Gaps = 45/382 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G +V SE++ ++ P +I AVTG++GK+T T + +ML G ++GGN+G PL
Sbjct: 99 RNGSQVTSEMEVFFELCPA--QIFAVTGSDGKTTTTTLIYKMLVEQGYNCWLGGNIGTPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + V+E+SS+Q+ + P V+VV NL P+HL+ HK+M Y
Sbjct: 157 LDRIDEI-------NETDKVVLELSSFQLHTMKR--SPHVAVVTNLAPNHLDVHKSMDEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK-TASFEV 201
K +++ H ++ F N + I + + + KID+ AK + V
Sbjct: 208 VEAKKNIYLHQTGNDKLVINFDNDITRDFINDAKGKVVYFSRIN--KIDSGAKMKGNMLV 265
Query: 202 PAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ G + + ++ + G HN N A +V+ V+++ + + HR+
Sbjct: 266 YSDGKEEKEIINADDIVIPGVHNIENYLAAIAAVIDY---VEIDTIRKVATTFKGVEHRI 322
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-------------------------K 294
++V R++ GV + +DS A++ T GL K K
Sbjct: 323 ELV-RELNGVKFYNDSIASSPSRTIAGLNSFKQKVILIAGGYDKKIPYDVMGEVLVNKVK 381
Query: 295 CVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
C++L+G A +L G IP +K+AV A + +GD I++SP
Sbjct: 382 CLVLIGQTAPKIEQALLKEIERTGKGKDIPIIHCDTLKEAVEKAYESSKSGDIIIMSPAS 441
Query: 355 ASFDEFRNFEHRGMVFQELAFS 376
ASFD F+NFE RG F+++ S
Sbjct: 442 ASFDMFKNFEERGKQFKDIVNS 463
>gi|404487173|ref|ZP_11022360.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Barnesiella
intestinihominis YIT 11860]
gi|404335669|gb|EJZ62138.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Barnesiella
intestinihominis YIT 11860]
Length = 447
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 192/383 (50%), Gaps = 44/383 (11%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
+A +A L + ++SE++FA + +++ +TG+NGK+T +L G++
Sbjct: 78 RAPMIAALREKNIPIISEIEFAGRYT--RARMICITGSNGKTTTTLLTYHILKSAGLKVG 135
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+G L+ C + V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 136 LAGNVGKSLALQVATC--------DYDYYVIELSSFQLD--NMYDFKAHIAILLNITPDH 185
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFP 186
L+R+ M+NY K + + + P + L++ +K R+ A P
Sbjct: 186 LDRYDYKMENYVDAKFRIIRNQTEDDAFIYWNDDPVITEKLSQLPLKSQRYPFAETHE-P 244
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
G + TE + + P + ++ + + GRHN +N+ A LS L+ V E +
Sbjct: 245 GTQAYTEDGALTIDTPEEKLT--METDELSLHGRHNLYNSMAAGLSACLLN--VKKEYVR 300
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-F 305
+ + HR++ V ++GV +++DSKATN+ + L +K V++LGG+ K
Sbjct: 301 KALSDFESVEHRLERVAS-VRGVQFINDSKATNVNSCWYALESMKT-PVVLILGGKDKGN 358
Query: 306 GYSGV----------LIWKTLVNNGL------SIPCFAVAN-MKDAVNHARRMATNGDAI 348
YS + L++ + N+ L +P A+ MK+AV+ + +A GD +
Sbjct: 359 DYSEIEQLVRDKVKALVFLGVDNSKLHAFFEGKVPYITEASSMKEAVDKSFALAAPGDTV 418
Query: 349 VLSPGCASFDEFRNFEHRGMVFQ 371
+LSP CASFD F+++E RG F+
Sbjct: 419 LLSPCCASFDLFKSYEDRGDQFK 441
>gi|395650346|ref|ZP_10438196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 448
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 171/356 (48%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGLPCWTFGLGKPDFKAF-GIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFGGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K +++ GG K G LI
Sbjct: 329 NVGAALAAIEGLGADIDG-KLLLIAGGDGKGADFKDLKGPVAEHCRAVVLLGRDADLIAA 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L G ++P +++ DA+ R +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 388 AL---GDAVPQVRASSLDDAIAQCRALAQPGDAVLLSPACASFDMFKNYEERGHLF 440
>gi|417958025|ref|ZP_12600942.1| hypothetical protein l13_13540 [Neisseria weaveri ATCC 51223]
gi|343967417|gb|EGV35662.1| hypothetical protein l13_13540 [Neisseria weaveri ATCC 51223]
Length = 445
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 185/386 (47%), Gaps = 43/386 (11%)
Query: 14 KATGLACLLQSGKRVMSELDFAA-QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
+A + QSG V+ +++ A ++ +S KI+A+TG+NGK+TV + VG + G++
Sbjct: 80 RAPEIEAFKQSGGVVLGDVEILAHELKGKSDKIIAITGSNGKTTVTSLVGYLCEKCGLDT 139
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
V GN+G P+ EA V V+E+SS+Q+E + + +VVLN++ DH
Sbjct: 140 VVAGNIGTPVLEAYMQ-----RGGKAADVWVLELSSFQLENTD-HLAADAAVVLNISEDH 193
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
L+R+ + +YA K +F L + + A+K ++ W + G + D
Sbjct: 194 LDRYDDLLDYAHAKDKIFRGSGVQVLN----ADDAMCRAMKRPNRDIKWF-SLEG-QADY 247
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
A + + A G L + + G HN N A +G+ L I+
Sbjct: 248 WADVQAGRLKA-GANDLLDTAAIPLQGLHNAANVLAALALCEA--VGLPRTELLQHIQTF 304
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
+ PHR++ V G+T++DDSK TN+ AT + L+ V++ GGQ K
Sbjct: 305 KGLPHRVEKVGEK-NGITFIDDSKGTNVGATAAAIAGLQ-SPLVLIAGGQGKGQDFTPLR 362
Query: 305 ------------FGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLS 351
G LI + L G+ I C A +++AV A ++A +GD ++LS
Sbjct: 363 AALHNKARAVLLIGEDAPLIRRDLTGCGVDLIDC---ATLEEAVQTAYKLAQSGDIVLLS 419
Query: 352 PGCASFDEFRNFEHRGMVFQELAFSA 377
P CASFD F+ + HR VF E AF A
Sbjct: 420 PACASFDMFKGYAHRAQVFVE-AFEA 444
>gi|254525588|ref|ZP_05137640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9202]
gi|221537012|gb|EEE39465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9202]
Length = 478
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/390 (26%), Positives = 183/390 (46%), Gaps = 55/390 (14%)
Query: 16 TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
T + L + G +V+ E++ A +++ + + +TGTNGK+TV + +L G+ A
Sbjct: 94 TTIIELKKKGIKVVGEINVAWEIL-KDTNWIGITGTNGKTTVTHLLSHILCDNGLYAPFA 152
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G PL + A C K V E+SSYQ+EI + P + + T DHLER
Sbjct: 153 GNIGTPLCKYA--C---SKKLEKIDWVVAELSSYQIEISPE-VKPNIGIWTTFTEDHLER 206
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
HKT++NY K L + + + +++L + H +L+ GV I T
Sbjct: 207 HKTLENYFNIKKSLLEK---SDFRIYNYDDKNL----RNHYSSLS-----RGVWITTSLD 254
Query: 196 TASFEVPAVGVVSQ----------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
++F + Q +L + G HN N + +V +G+ + +
Sbjct: 255 KSNFIQCDYWIDDQAYIVERGKRLFKLEYFSLRGMHNLQNLLLVIAAV--RKVGLSGKEI 312
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK- 304
++ + PHRM+ ++++ + ++DSKATN +++ G+ ++G + +I+ GG+ K
Sbjct: 313 KDSLSNYKQLPHRMETIYKN-NYLEIINDSKATNFDSSIAGISSIEG-QMIIIAGGRLKG 370
Query: 305 -------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 345
FG S ++ L+N G F + +KD +N N
Sbjct: 371 NEYSEWIKVLKKKVKCIFLFGESSKVLKMALINEGFKKSIFEFSELKDLLNFVFHYLQNN 430
Query: 346 --DAIVLSPGCASFDEFRNFEHRGMVFQEL 373
++ SP C+SFD+F+N+E RG F++L
Sbjct: 431 RVRTLLFSPSCSSFDQFKNYEERGDYFKKL 460
>gi|291542832|emb|CBL15942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
bromii L2-63]
Length = 463
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 172/383 (44%), Gaps = 44/383 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G + SE++ + P +I+AVTG++GK+T T + + L G +GGN
Sbjct: 93 LVALRNKGVVLTSEMEVFFDLCP--CRIIAVTGSDGKTTTTTIISEFLKAAGFNVHLGGN 150
Query: 78 LGNPLSEAAFHCIALP--SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
+G PL LP S AVVE+SS+Q+ K P ++VV NL P+HL+
Sbjct: 151 IGKPL---------LPEIESVNDDDCAVVELSSFQLISMRK--SPDIAVVTNLAPNHLDI 199
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
HK M+ Y +K ++ H +L N+ N + R LA V
Sbjct: 200 HKDMQEYIDSKKNIILHQNAFSKAVLNLDNEITNGFSESVRGQLAKFSVKENVSNGAFLD 259
Query: 196 TASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ G +++ + +H++K+ G HN N A +V GL VD E + + +
Sbjct: 260 GDTICYNDYGKITRIMNIHDIKIPGMHNVENYLAAISAVWGL---VDAETMTAVAKTFGG 316
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---------- 304
HR + V R++ GV + +DS A++ T G + L K I+ GG K
Sbjct: 317 VAHRAEFV-REVDGVKYYNDSIASSPTRTALGTLSLYKQKICIIAGGYDKHIPYEPLGPV 375
Query: 305 ----------FGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAIVL 350
G + I K + + I V NM++AV AR +T GD + L
Sbjct: 376 INDKVKLLILLGDTAPKIEKAVKEASNYDADEIEIVNVTNMEEAVAVARERSTKGDIVSL 435
Query: 351 SPGCASFDEFRNFEHRGMVFQEL 373
SP ASF ++NFE RG F+ +
Sbjct: 436 SPASASFGLYKNFEERGNHFKSI 458
>gi|229514032|ref|ZP_04403494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
TMA 21]
gi|229349213|gb|EEO14170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
TMA 21]
Length = 467
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 137 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 187
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 188 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 246
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 247 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 292
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 293 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 347
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----- 328
DSKATN+ +T L LK + LL G G + L + + CF V
Sbjct: 348 DSKATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQF 407
Query: 329 ----------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 408 MPLHPSARFYDSMESIIRSIRTQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 463
>gi|152998950|ref|YP_001364631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
baltica OS185]
gi|151363568|gb|ABS06568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS185]
Length = 439
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 176/373 (47%), Gaps = 54/373 (14%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+M GI VGGN+G P
Sbjct: 90 GIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMAREAGIAVAVGGNIGVP-- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AL + V+E+SS+Q+E + C V+ LN++ DH++R+ + Y
Sbjct: 148 -------ALDLLHENADLFVLELSSFQLETTHSLKC-VVATCLNISEDHMDRYSDIAAYR 199
Query: 144 LTKCHLFSHM------VNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
K L+ + KL + P E + + F LA A D++
Sbjct: 200 EAKLRLYKQSRAVLFNRDDKLTVPP-------EPMNQNSFGLAAPEADEWGISDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTP 255
S E+ + + + ++G HN+ N AA+A + V +GVD + +
Sbjct: 253 SSEI--------MPITEVSLIGSHNHANLLAAMALVDV----VGVDKQIMAKVARSFTGL 300
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAK---FGYSGV 310
HR ++V GVT+V+DSKATN+ AT L L H +++ GG K F GV
Sbjct: 301 SHRCEVVGIK-NGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFKPLGV 359
Query: 311 LIWK-----TLVNNGLSIPCFA-----VANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
+ K TL +G I V M AV A +AT+GD ++LSP CAS D +
Sbjct: 360 ALAKVTHLITLGRDGKKIAALKDGAVRVETMAAAVTKAAELATSGDIVLLSPACASLDMY 419
Query: 361 RNFEHRGMVFQEL 373
NF RG F+ L
Sbjct: 420 SNFMARGDDFRNL 432
>gi|409196667|ref|ZP_11225330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinilabilia
salmonicolor JCM 21150]
Length = 447
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 188/385 (48%), Gaps = 56/385 (14%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L Q G V+SE++FA + + K++ VTG+NGK+T ++ ++ G+ + GN
Sbjct: 80 IKALHQQGIPVISEIEFAGRY--SNAKMVGVTGSNGKTTTAMWIFHLMKKSGLNVVLAGN 137
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+GN ++ L P + V+E+SS+Q++ + C T +++ N+TPDHL+R+
Sbjct: 138 VGNSMARE------LLEKDP--DIFVLELSSFQLDGMKDFKCHT-AIITNITPDHLDRYD 188
Query: 138 -TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK-----GHRFNLAWIGAF------ 185
+NY K + ++ N ++ + ++ + +K GHR A+ +
Sbjct: 189 YKFENYVDAKFRILNNHTNDEIFIFNAHDKEIMVRLKMMKYPGHRCPFAFDDVYGEGACV 248
Query: 186 PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
G K+ F +P V ++ + G+HN NA A+L+ L + G EA+
Sbjct: 249 DGEKVVFNTPRHHFSIPVV---------DIALPGKHNLSNAMAASLAALRM--GASEEAV 297
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF 305
+ + HR++ V ++ GV +++DSKATN++++ L ++ + VI + G
Sbjct: 298 KEGLTDFPSVAHRLESV-AELNGVLYINDSKATNIDSSWYALESME--RPVIWIAGGTDK 354
Query: 306 G--YS----------------GVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGD 346
G YS GV K L G +P AN M AV A A +GD
Sbjct: 355 GNDYSELEELAIQKVKHLICLGVDNRKLLAVFGNKLPVVTEANSMSQAVEQAVDAARSGD 414
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQ 371
++LSP CASFD F N+ HRG +F+
Sbjct: 415 VVLLSPACASFDLFDNYVHRGDMFK 439
>gi|289578675|ref|YP_003477302.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
italicus Ab9]
gi|289528388|gb|ADD02740.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
italicus Ab9]
Length = 454
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 190/378 (50%), Gaps = 48/378 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q V E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL
Sbjct: 90 QKKIEVFGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
A + +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY
Sbjct: 148 IYAV-----MEAAEDDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TEAKTA 197
K +F + + +L + ++ + + N A FP + K
Sbjct: 200 RDIKGRIFENQREDEYTVLNY-----DDPVTWNLKNKAKCRVFPFSRKSLLENGAYVKDG 254
Query: 198 SFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
S + G + + + + + G HN N A+AA SV L G+ + + +T++ +
Sbjct: 255 SIYISVYGNAEKIIDIEEIYIPGEHNLEN-ALAASSVAYLS-GISADVIANTLKTFKGVE 312
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------FGYS 308
HR++ V +I GV + +DSK TN +A+ + LK V++ GG K ++
Sbjct: 313 HRIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDKGSEFDEFVKAFN 370
Query: 309 G-----VLIWKTL-----VNNGLSIP----CFAVANMKDAVNHARRMATNGDAIVLSPGC 354
G +LI +T S P FA +++AV A A GD+++LSP C
Sbjct: 371 GKVKKLILIGQTAKKIKDTARKYSYPEDDILFA-GTLEEAVKKAYESAKEGDSVLLSPAC 429
Query: 355 ASFDEFRNFEHRGMVFQE 372
AS+D FRNFE RG +F++
Sbjct: 430 ASWDMFRNFEERGRIFKK 447
>gi|217971631|ref|YP_002356382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
baltica OS223]
gi|217496766|gb|ACK44959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
OS223]
Length = 439
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 176/373 (47%), Gaps = 54/373 (14%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+M GI VGGN+G P
Sbjct: 90 GIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMAREAGIAVAVGGNIGVP-- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AL + V+E+SS+Q+E + C V+ LN++ DH++R+ + Y
Sbjct: 148 -------ALDLLHENADLFVLELSSFQLETTHSLKC-VVATCLNISEDHMDRYSDIAAYR 199
Query: 144 LTKCHLFSHM------VNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
K L+ + KL + P E + + F LA A D++
Sbjct: 200 EAKLRLYKQSRAVLFNRDDKLTVPP-------EPMNQNSFGLAAPEADEWGISDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTP 255
S E+ + + + ++G HN+ N AA+A + V +GVD + +
Sbjct: 253 SSEI--------MPITEVSLIGSHNHANLLAAMALVDV----VGVDKQIMAKVARSFTGL 300
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAK---FGYSGV 310
HR ++V GVT+V+DSKATN+ AT L L H +++ GG K F GV
Sbjct: 301 SHRCEVVGIK-NGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFKPLGV 359
Query: 311 LIWK-----TLVNNGLSIPCFA-----VANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
+ K TL +G I V M AV A +AT+GD ++LSP CAS D +
Sbjct: 360 ALAKVTHLITLGRDGKKIAALKDGAVRVETMAAAVTKAAELATSGDIVLLSPACASLDMY 419
Query: 361 RNFEHRGMVFQEL 373
NF RG F+ L
Sbjct: 420 SNFMARGDDFRNL 432
>gi|417821720|ref|ZP_12468334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE39]
gi|340039351|gb|EGR00326.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE39]
Length = 406
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 76 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 126
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 127 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAEAAVVNADDTQ 185
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 186 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 231
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 232 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 286
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----- 328
DSKATN+ +T L LK + LL G G + L + + CF V
Sbjct: 287 DSKATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTSLAPVLATLPVQLCCFGVDGHQF 346
Query: 329 ----------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 347 MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 402
>gi|161581989|ref|NP_232033.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae O1 biovar El Tor str. N16961]
gi|254849525|ref|ZP_05238875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
MO10]
gi|298500237|ref|ZP_07010042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
757]
gi|254845230|gb|EET23644.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
MO10]
gi|297540930|gb|EFH76984.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
757]
Length = 444
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 186/407 (45%), Gaps = 65/407 (15%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 65 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 122
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 123 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 173
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 174 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 232
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 233 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 278
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 279 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 333
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------------- 328
T L LK + LL G G + L + + CF V
Sbjct: 334 TLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARF 393
Query: 329 -ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 394 YDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 440
>gi|423957693|ref|ZP_17735436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-40]
gi|423985678|ref|ZP_17738992.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-46]
gi|408656527|gb|EKL27621.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-40]
gi|408663521|gb|EKL34390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-46]
Length = 440
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 161 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAEAAVVNADDTQ 219
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 220 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 265
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 266 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 320
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----- 328
DSKATN+ +T L LK + LL G G + L + + CF V
Sbjct: 321 DSKATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTSLAPVLATLPVQLCCFGVDGHQF 380
Query: 329 ----------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 381 MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|350570241|ref|ZP_08938609.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
wadsworthii 9715]
gi|349797290|gb|EGZ51057.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
wadsworthii 9715]
Length = 445
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 183/383 (47%), Gaps = 55/383 (14%)
Query: 23 QSGKRVMSELDFAA-QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
QSG V+ +++ A ++ +S KI+A+TG+NGK+TV + VG + G++ V GN+G P
Sbjct: 89 QSGGVVLGDVEILAHELKGKSDKIIAITGSNGKTTVTSLVGYLCEKCGLDTVVAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA V V+E+SS+Q+E + + +VVLN++ DHL+R+ + +
Sbjct: 149 VLEAYMQ-----RDGKAADVWVLELSSFQLENTD-HLAADAAVVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA K +F G Q LN A+K ++ W + G + D A
Sbjct: 203 YAHAKDKIFRGN----------GVQVLNADDVMCRAMKRPNRDIKWF-SLEG-QADYWAD 250
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ + A G L + + G HN N A +G+ L I+ +
Sbjct: 251 VQAGRLKA-GADDLLDTAAIPLQGLHNAANVLAALALCEA--VGLPRTELLQHIQTFKGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------- 304
PHR++ V G+T++DDSK TN+ AT + L+ V++ GGQ K
Sbjct: 308 PHRVEKVGEK-NGITFIDDSKGTNVGATAAAIAGLQ-SPLVLIAGGQGKGQDFTPLRAAL 365
Query: 305 ---------FGYSGVLIWKTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
G LI + L G+ I C A +++AV A ++A +GD ++LSP C
Sbjct: 366 HNKARAVLLIGVDAPLIRRDLTGCGVDLIDC---ATLEEAVQTAYKLAQSGDIVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVFQELAFSA 377
ASFD F+ + HR VF E AF A
Sbjct: 423 ASFDMFKGYAHRAQVFVE-AFEA 444
>gi|417818160|ref|ZP_12464788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HCUF01]
gi|419827348|ref|ZP_14350847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1033(6)]
gi|421322153|ref|ZP_15772705.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1038(11)]
gi|421329609|ref|ZP_15780119.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1042(15)]
gi|421337107|ref|ZP_15787568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1048(21)]
gi|421340535|ref|ZP_15790967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-20A2]
gi|421348325|ref|ZP_15798702.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-46A1]
gi|423161095|ref|ZP_17148033.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-33A2]
gi|423165923|ref|ZP_17152643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-48B2]
gi|424602633|ref|ZP_18041772.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1047(20)]
gi|424622963|ref|ZP_18061466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-47A1]
gi|424657513|ref|ZP_18094797.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-81A2]
gi|340035756|gb|EGQ96734.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HCUF01]
gi|356443588|gb|EHH96407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-33A2]
gi|356449647|gb|EHI02390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-48B2]
gi|395917893|gb|EJH28720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1038(11)]
gi|395928143|gb|EJH38906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1042(15)]
gi|395932206|gb|EJH42950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1048(21)]
gi|395939818|gb|EJH50500.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-20A2]
gi|395942904|gb|EJH53580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-46A1]
gi|395970188|gb|EJH79986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-47A1]
gi|395974677|gb|EJH84196.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1047(20)]
gi|408051931|gb|EKG87000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-81A2]
gi|408608138|gb|EKK81541.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1033(6)]
Length = 406
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 76 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 126
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 127 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 185
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 186 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 231
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 232 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 286
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----- 328
DSKATN+ +T L LK + LL G G + L + + CF V
Sbjct: 287 DSKATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQF 346
Query: 329 ----------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 347 MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 402
>gi|338536724|ref|YP_004670058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus fulvus
HW-1]
gi|337262820|gb|AEI68980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus fulvus
HW-1]
Length = 455
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 175/381 (45%), Gaps = 53/381 (13%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V E++ A +V+ + + +TGTNGKST G + FVGGNLG P S
Sbjct: 93 AGVAVWGEVELAGRVLA-GVPLFGITGTNGKSTTTALTGALFAAGDKRTFVGGNLGRPFS 151
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
EAA S + VVE+SSYQ+E + P + +LNLTPDH++R+ + Y
Sbjct: 152 EAAM-------SPEAWDALVVELSSYQLE-GIRALRPRGAAILNLTPDHIDRYPSHAAYG 203
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQH------LNEAIKGHRFNLAWIG-------AFPGVKI 190
K +F +N + G N L A K + + G A G+ +
Sbjct: 204 EAKARIF---LNQQAGDFAVVNADDADVLGLARAAKASVYGFSLTGEPVADAPALAGLAV 260
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
A+ F + +G L N + G HN NA AAL LG GV A+ + +
Sbjct: 261 ---AEPGGFRLEFLG--EHYTLTNRALRGAHNAQNAMAAALLARLG---GVASGAVQAGL 312
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG 309
+ PHR++ V R + GV WV+DSKATN+++ L ++ GG+ K
Sbjct: 313 DGYPGLPHRLESV-RVLDGVEWVNDSKATNVDSVLVALRAFS-SGVWLIAGGKGKGAPYA 370
Query: 310 VLIW------KTLVNNGLSIPCFAVA-----------NMKDAVNHARRMATNGDAIVLSP 352
++ K ++ G A A + AV AR +A GD ++LSP
Sbjct: 371 PMVEAGRGKVKGVLTMGDDADTLARAYAGAARVHACGTLAQAVARAREVAERGDTVLLSP 430
Query: 353 GCASFDEFRNFEHRGMVFQEL 373
CASFD+F+NFE RG F+ L
Sbjct: 431 ACASFDQFKNFEDRGETFKRL 451
>gi|408483717|ref|ZP_11189936.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. R81]
Length = 448
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 170/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGLPCWTFGLGKPDFKAF-GIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRTFGGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D++G K V++ GG K G LI
Sbjct: 329 NVGAALAAIEGLGADIEG-KLVLIAGGDGKGADFKDLKGPVAEHCRAVVLMGRDSDLIAA 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L G ++P ++ DA+ + +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 388 AL---GDAVPQVRATSLDDAIAQCKALAQPGDAVLLSPACASFDMFKNYEERGQLF 440
>gi|169343170|ref|ZP_02864191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens C str. JGS1495]
gi|169298722|gb|EDS80798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens C str. JGS1495]
Length = 458
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 174/360 (48%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDAEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGVTKEKIKAAFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>gi|300774251|ref|ZP_07084118.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Sphingobacterium spiritivorum ATCC 33861]
gi|300758930|gb|EFK55759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Sphingobacterium spiritivorum ATCC 33861]
Length = 457
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 182/384 (47%), Gaps = 50/384 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L Q G V+ E++FAAQ + ++ +TG+NGKST +L G+ + GN
Sbjct: 90 VVALKQKGIPVIGEIEFAAQYT--NARLYCITGSNGKSTTTMLTYYILQKAGVNVGLAGN 147
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH 136
+G AL ++ KF V V+E+SS+ ++ + Y F V+V+LN+TPDHL+R+
Sbjct: 148 IG--------RSFALQVAQEKFDVYVLEISSFMLD--DMYQFRADVAVILNITPDHLDRY 197
Query: 137 K-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA-WIGAF-----PGVK 189
M+NY +K + + + ++ + ++ H A W PG
Sbjct: 198 DHKMENYVDSKFRMIRNQTANDYFIYCLDDEETVKGLERHHTEAAIWPMTQEQVINPGAY 257
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL--SVLGLDIGVDVEALNS 247
+D E K P G + ++ + G+HN +N A L V L E+++S
Sbjct: 258 LDQE-KNIIINTPK-GEQFIMNTEDLSLQGKHNVYNNMAAGLVAKVQELRNRSMQESMSS 315
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGY 307
+ I PHR++ V I GV +++DSKATN+ + L + V+++GG K G
Sbjct: 316 YVNI----PHRLEHVAC-IGGVNYINDSKATNVNSVWYALESF-SPQIVLIMGGVDK-GN 368
Query: 308 SGVLIWKTLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAI 348
++ + + +I C N MKDAV A +A GD +
Sbjct: 369 DYEMLRDLVRSKVRAIICIGKDNTRIHESFEEDTDVIVNSSSMKDAVEIASHIAQKGDTV 428
Query: 349 VLSPGCASFDEFRNFEHRGMVFQE 372
+LSP CASFD F+N+E RG F+E
Sbjct: 429 LLSPACASFDWFKNYEERGDKFKE 452
>gi|422911230|ref|ZP_16945856.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-09]
gi|341632036|gb|EGS56910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-09]
Length = 440
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 117/413 (28%), Positives = 185/413 (44%), Gaps = 77/413 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKASVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK 173
+ + LNL+ DH++R++ M++Y K +F H +
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVV--------------- 213
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHN--------------MKVMG 219
N FP + T E A V+Q Q H + ++G
Sbjct: 214 ----NADDTQTFPDHAAHLQVVTFGVEQAAQFTVAQHQGHEYLFARDEAVMACAELSLVG 269
Query: 220 RHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
RHN N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKA
Sbjct: 270 RHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKA 324
Query: 278 TNLEATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA------- 329
TN+ +T L LK + +L+GG K G + L + + CF V
Sbjct: 325 TNVASTLAALSGLKIAGQLYLLVGGVGK-GADFTPLAPVLATLPVQLCCFGVDGHQFMPL 383
Query: 330 --------NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 384 HPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|168206854|ref|ZP_02632859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens E str. JGS1987]
gi|170661761|gb|EDT14444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens E str. JGS1987]
Length = 458
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 169/360 (46%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIYAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGH--RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
N+ +L++ KG RF+ D + EV + N+ +
Sbjct: 229 ENEITKNLDKEAKGKVVRFSSKKTKGEDAYYKDGKLYVHGKEV--------CKKDNIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGVTKEKIKAAFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>gi|227082526|ref|YP_002811077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae M66-2]
gi|229507535|ref|ZP_04397040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
330286]
gi|229512269|ref|ZP_04401748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
B33]
gi|229519405|ref|ZP_04408848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
RC9]
gi|229607041|ref|YP_002877689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae MJ-1236]
gi|9656976|gb|AAF95546.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|227010414|gb|ACP06626.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
M66-2]
gi|229344094|gb|EEO09069.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
RC9]
gi|229352234|gb|EEO17175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
B33]
gi|229355040|gb|EEO19961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
330286]
gi|229369696|gb|ACQ60119.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
MJ-1236]
Length = 467
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 137 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 187
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 188 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 246
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 247 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 292
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 293 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 347
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----- 328
DSKATN+ +T L LK + LL G G + L + + CF V
Sbjct: 348 DSKATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQF 407
Query: 329 ----------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 408 MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 463
>gi|419838094|ref|ZP_14361532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-46B1]
gi|423736055|ref|ZP_17709246.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-41B1]
gi|424010388|ref|ZP_17753322.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-44C1]
gi|408629138|gb|EKL01848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-41B1]
gi|408856642|gb|EKL96337.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-46B1]
gi|408863131|gb|EKM02624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-44C1]
Length = 440
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 186/407 (45%), Gaps = 65/407 (15%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALARPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------------- 328
T L LK + LL G G + L + + CF V
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARF 389
Query: 329 -ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 390 YDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|297581030|ref|ZP_06942955.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
RC385]
gi|297534856|gb|EFH73692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
RC385]
Length = 444
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 186/408 (45%), Gaps = 67/408 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 65 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 121
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P + V+E+SS+Q+E
Sbjct: 122 GKSTVTDLSGMLANAAGVKAAVGGNIGVP---------ALDLISPDVDLYVLELSSFQLE 172
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M++Y K +F H +VN P H
Sbjct: 173 TTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 231
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 232 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 277
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 278 ANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 332
Query: 282 ATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV------------- 328
+T L LK + LL G G + L + + CF V
Sbjct: 333 STLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSAR 392
Query: 329 --ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 393 FYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 440
>gi|424660897|ref|ZP_18098144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-16]
gi|408049959|gb|EKG85139.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-16]
Length = 440
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 189/408 (46%), Gaps = 67/408 (16%)
Query: 2 WML-WLFLLEFQLKATGLACL-------LQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A + L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALVTPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTK-LGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P +HL
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDQAEHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F +A + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFTVAQHQGHEYLFARDEAVMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA------------ 329
T L LK + +L+GG K G + L + + CF V
Sbjct: 330 TLAALSGLKIAGQLYLLVGGVGK-GADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSAR 388
Query: 330 ---NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 389 FYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|421344606|ref|ZP_15795009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-43B1]
gi|395940686|gb|EJH51367.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-43B1]
Length = 406
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 76 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 126
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 127 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 185
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 186 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 231
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 232 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 286
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----- 328
DSKATN+ +T L LK + LL G G + L + + CF V
Sbjct: 287 DSKATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQF 346
Query: 329 ----------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 347 MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 402
>gi|421355087|ref|ZP_15805419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-45]
gi|395954212|gb|EJH64825.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-45]
Length = 440
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 186/407 (45%), Gaps = 65/407 (15%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------------- 328
T L LK + LL G G + L + + CF V
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARF 389
Query: 329 -ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 390 YDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|419834523|ref|ZP_14357978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-61A2]
gi|423857096|ref|ZP_17720945.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-59A1]
gi|423884370|ref|ZP_17724537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-60A1]
gi|424017556|ref|ZP_17757382.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55B2]
gi|424637466|ref|ZP_18075472.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55A1]
gi|443528361|ref|ZP_21094398.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-78A1]
gi|408022586|gb|EKG59791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55A1]
gi|408639700|gb|EKL11507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-59A1]
gi|408640020|gb|EKL11821.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-60A1]
gi|408649345|gb|EKL20662.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-61A2]
gi|408859063|gb|EKL98732.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55B2]
gi|443453278|gb|ELT17108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-78A1]
Length = 406
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 76 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 126
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 127 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 185
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 186 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 231
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 232 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 286
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----- 328
DSKATN+ +T L LK + LL G G + L + + CF V
Sbjct: 287 DSKATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQF 346
Query: 329 ----------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 347 MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 402
>gi|312959055|ref|ZP_07773574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
fluorescens WH6]
gi|311286825|gb|EFQ65387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
fluorescens WH6]
Length = 448
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 171/356 (48%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGMPCWTFGLGKPDFKAF-GIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRAFGGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G LI
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGADFKDLKAPVAEHCRAVVLMGRDADLIAA 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L G ++P ++ DA+ + +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 388 AL---GDAVPQVRATSLDDAIAQCKALAQPGDAVLLSPACASFDMFKNYEERGQLF 440
>gi|262190386|ref|ZP_06048646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
5369-93]
gi|262033726|gb|EEY52206.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
5369-93]
Length = 440
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 186/407 (45%), Gaps = 65/407 (15%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLVARNEAFMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------------- 328
T L LK + LL G G + L + + CF V
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARF 389
Query: 329 -ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 390 YDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|229521234|ref|ZP_04410654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
11079-80]
gi|229341766|gb|EEO06768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
11079-80]
Length = 467
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 137 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 187
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 188 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 246
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 247 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 292
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 293 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 347
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----- 328
DSKATN+ +T L LK + LL G G + L + + CF V
Sbjct: 348 DSKATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQF 407
Query: 329 ----------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 408 MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 463
>gi|387791883|ref|YP_006256948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Solitalea
canadensis DSM 3403]
gi|379654716|gb|AFD07772.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Solitalea
canadensis DSM 3403]
Length = 447
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 190/382 (49%), Gaps = 42/382 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + +++ G R++SE++FA + K + +TG+NGK+T +L G+
Sbjct: 78 KAPIVKKIIEKGIRIVSEIEFAGRY--NKAKTICITGSNGKTTTTMLTYHILQKAGLNVG 135
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+G ++ ++ + V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 136 LAGNVGQSFAKQV--------AEDNYDYYVLELSSFQLD--NMYEFKADIAILLNITPDH 185
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+R+ M+NY +K + + + + ++ + + ++F A + F +
Sbjct: 186 LDRYDYKMQNYVDSKFRVTQNQTSADAFIYCLDDEETMKVMANNKFE-ARLFPFSLAQKV 244
Query: 192 TEAKTASFEVPAVGVVSQ---LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ A+ + + + + + + G+HN +N+ A ++ L+I D +L +
Sbjct: 245 EQGAYATEDTIYIQTNKNNFNMTISELALQGKHNVNNSMAAGIAAKLLEIRSD--SLRES 302
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS 308
+ + PHR++ V R IQG+ +++DSKATN+ + L + K V + GG K G
Sbjct: 303 LGDFQNVPHRLEHVAR-IQGIEFINDSKATNVNSVWFALESM-NTKVVWIAGGVDK-GND 359
Query: 309 GVLIWKTLVNNGLSIPCFAVANMK-------------------DAVNHARRMATNGDAIV 349
++++ + + +I C N K +AVN A +AT GD ++
Sbjct: 360 YSMLYELVKDKVKAIVCLGKDNKKIHDAFDDKVEIIVNTASAEEAVNVAYHLATKGDTVL 419
Query: 350 LSPGCASFDEFRNFEHRGMVFQ 371
LSP CASFD F+++E RG F+
Sbjct: 420 LSPACASFDLFKSYEDRGDQFK 441
>gi|261211501|ref|ZP_05925789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
gi|260839456|gb|EEX66082.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
Length = 440
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 188/410 (45%), Gaps = 78/410 (19%)
Query: 5 WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKST 56
WL + + G+A +L +G V+ +++ FA V ++A+TG+NGKST
Sbjct: 65 WLLSADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSNGKST 121
Query: 57 VVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK 116
V G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E +
Sbjct: 122 VTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLETTSS 172
Query: 117 YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTK-----------LGLL 161
+ LNL+ DH++R++ M++Y K +F H +VN L ++
Sbjct: 173 LKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGHAETAVVNADDTQTFPDHAAHLQVV 231
Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
FG +H +F++A + EA A E + ++GRH
Sbjct: 232 TFGVEH------AAQFSVAQHQGREYLFARDEAVMACAE--------------LSLVGRH 271
Query: 222 NYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
N N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN
Sbjct: 272 NVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATN 326
Query: 280 LEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----------- 328
+ +T L LK + LL G G + L + + CF V
Sbjct: 327 VASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGDKFMPLHPS 386
Query: 329 ----ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 387 ARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|404475939|ref|YP_006707370.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
pilosicoli B2904]
gi|404437428|gb|AFR70622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
pilosicoli B2904]
Length = 463
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 192/377 (50%), Gaps = 54/377 (14%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V+ E++FA +IP ++VTGT+GK+T V + +++ +A + GN+GN S+
Sbjct: 108 KVIGEIEFAYNLIPDR-NYISVTGTDGKTTTVNLIYSIISSYK-KARLLGNVGNTFSKEV 165
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
S K + V+E+SS+Q+E + F +SV+LN+ DHL+R+ +++Y K
Sbjct: 166 -------ESIEKDEDIVLELSSFQLETVHN-FHSHISVILNIAEDHLDRYDDIEDYFNAK 217
Query: 147 CHLFSHMVNTKLGLL----PFGNQHLNEAIKGH--RFNLAWIGAF---PGVKIDTEAKTA 197
++ + + +L + N++ NE IK FN+ + ++E +
Sbjct: 218 KNITKNQNSNDFLILNYDNSYTNRYYNELIKTKDISFNVLTFSTKCKKANLYYNSEDECL 277
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ + +++ QL +G HN N + L+ L +I V E ++ + ++ H
Sbjct: 278 YYNGEKLFSIAKRQL-----LGMHNIENILASVLACLKDNIPV--EYIDKAVNNFKSIEH 330
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------- 304
R++ V ++I GV +++DSKAT++ A + L + ++++GG+ K
Sbjct: 331 RLEFV-KEINGVKYINDSKATSMSAVMSALKSFDKN-IILIMGGRNKGIDFKPLKSIIEE 388
Query: 305 -------FGYSGVLIWKTL-VNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G + + K + V+N + I F +A ++A+++A GD ++LSPGCAS
Sbjct: 389 RVKKLILTGEASEDLNKMIDVSNKIIIKDFT-----EAFDYAKKIAVKGDTVLLSPGCAS 443
Query: 357 FDEFRNFEHRGMVFQEL 373
FD F+N+E RG F+ L
Sbjct: 444 FDSFKNYEERGKYFKSL 460
>gi|153803325|ref|ZP_01957911.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
MZO-3]
gi|254226621|ref|ZP_04920201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
V51]
gi|254291799|ref|ZP_04962584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
AM-19226]
gi|384425346|ref|YP_005634704.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
LMA3984-4]
gi|419830839|ref|ZP_14354324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-1A2]
gi|422918235|ref|ZP_16952549.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-02A1]
gi|422923697|ref|ZP_16956842.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
BJG-01]
gi|423823132|ref|ZP_17717140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55C2]
gi|423998656|ref|ZP_17741906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-02C1]
gi|424020476|ref|ZP_17760257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-59B1]
gi|424625854|ref|ZP_18064313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-50A1]
gi|424630341|ref|ZP_18068623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-51A1]
gi|424634388|ref|ZP_18072486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-52A1]
gi|424641370|ref|ZP_18079250.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-56A1]
gi|424649439|ref|ZP_18087100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-57A1]
gi|429884935|ref|ZP_19366540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
PS15]
gi|124121143|gb|EAY39886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
MZO-3]
gi|125620840|gb|EAZ49194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
V51]
gi|150422311|gb|EDN14273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
AM-19226]
gi|327484899|gb|AEA79306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
LMA3984-4]
gi|341635570|gb|EGS60284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-02A1]
gi|341643728|gb|EGS68005.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
BJG-01]
gi|408011165|gb|EKG48996.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-50A1]
gi|408017244|gb|EKG54760.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-52A1]
gi|408022073|gb|EKG59300.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-56A1]
gi|408031416|gb|EKG68041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-57A1]
gi|408053413|gb|EKG88427.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-51A1]
gi|408620612|gb|EKK93624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-1A2]
gi|408634405|gb|EKL06663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-55C2]
gi|408852202|gb|EKL92043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-02C1]
gi|408866674|gb|EKM06051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-59B1]
gi|429228267|gb|EKY34195.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
PS15]
Length = 440
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 186/407 (45%), Gaps = 65/407 (15%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------------- 328
T L LK + LL G G + L + + CF V
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARF 389
Query: 329 -ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 390 YDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|332295506|ref|YP_004437429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
narugense DSM 14796]
gi|332178609|gb|AEE14298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
narugense DSM 14796]
Length = 464
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 172/374 (45%), Gaps = 60/374 (16%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ ELD ++P + + VTGTNGK+TV ++G + +V GN+G PLSE +
Sbjct: 100 VVGELDLVFGLLPDGVNTIGVTGTNGKTTVTEWIGYGFEVAKMPYYVAGNVGTPLSEIIY 159
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFC-PTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + V+E+SSYQ+E N F P ++++ NLT DH++R+ + Y K
Sbjct: 160 DIVTGSN-------LVLELSSYQIE--NSIFLKPKIAMITNLTLDHIDRYANLDEYFNAK 210
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV-- 204
HLF + N + + +L + IK NL KI +K F + V
Sbjct: 211 VHLFKNQENG-YSIYNKDDPYLEKNIK----NLTL-----KTKILNVSKRKDFSIAGVIE 260
Query: 205 ---------GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
V + L ++ + G HN NA A S L L V+ + + +
Sbjct: 261 NKIFVKDNLDFVKIIDLSDLSLKGEHNIENALFVA-SSLYLS-SVEPKHIEKALSTFSGV 318
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAK---------- 304
HR + + +G+TW++DSK+TN E+T L + + +++LGG+ K
Sbjct: 319 EHRQERFYTH-KGITWINDSKSTNPESTIVALKTWGENNNLILILGGKDKNTPLDELVSL 377
Query: 305 ----------FGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIVLSPG 353
FG + K ++ S P F + ++ D ++ A +A D ++ SP
Sbjct: 378 ASKTCKAIILFGEAK----KRFFDHFKSFPNLFVLNSLDDVIDKAFELAKPNDIVLFSPA 433
Query: 354 CASFDEFRNFEHRG 367
CASFD F NFE RG
Sbjct: 434 CASFDMFANFEERG 447
>gi|298531031|ref|ZP_07018432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509054|gb|EFI32959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 433
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 108/369 (29%), Positives = 171/369 (46%), Gaps = 57/369 (15%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L +G+ V+SEL+ A+ I S ++AVTGTNGK+T + ++L G F GGN+G
Sbjct: 92 LCPAGQTVISELELASWFI--SEPVIAVTGTNGKTTTCMLIQKVLEKAGRRVFTGGNIGT 149
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PLS+ H + S + + V+EVSS+Q++ + F P V V+LN + +HL+ H++
Sbjct: 150 PLSD---HVL----SGKRADILVLEVSSFQLQGCSG-FTPHVGVLLNFSANHLDHHESED 201
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
Y K LF+ L +LP + E+ + N+ + A T F
Sbjct: 202 EYFRAKMQLFARQGPMDLAVLPLDLRARVESDFRIKSNITYF-----------APTGRFH 250
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
P + G HN N A L+ +D+ ++ + + PPHR +
Sbjct: 251 CPG-------------LPGAHNQANMEAAMLACGFVDVSRNI--FDQALLEFVPPPHRQE 295
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNG 320
+ +D +GV +++DSKAT LEA L +L GG+ K G L+ TL
Sbjct: 296 VFLQD-KGVRYINDSKATTLEAMTAALKAFDS-PIRLLAGGRYK-GGDFSLLAGTLQEKA 352
Query: 321 LSIPCFA------------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
+ F A+++ A A + A GD ++LSPG +SFD F N
Sbjct: 353 AKVYLFGDSREIFEDAWKNSADMEHFADLEQAAARAVQEAGPGDNVLLSPGTSSFDLFNN 412
Query: 363 FEHRGMVFQ 371
++ RG F+
Sbjct: 413 YQERGEAFK 421
>gi|295698678|ref|YP_003603333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Riesia
pediculicola USDA]
gi|291157135|gb|ADD79580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Riesia
pediculicola USDA]
Length = 439
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 186/372 (50%), Gaps = 44/372 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G ++ +++ + + R KI+++TG+NGKST + + ++ ++ +GGN+G P+
Sbjct: 87 RKGIEIIGDIELFCREVDRDKKIISITGSNGKSTTASVLTEIAKKANLKVGLGGNIGVPV 146
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
E + + + ++E+SS+Q+EI + +V+LN++ +H++R+ M
Sbjct: 147 LELLNY---------DYDIYILELSSFQLEITST-LKSIGAVILNISENHMDRYPFGMYQ 196
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-ASFE 200
Y K ++ N + ++ N+ + I F L++ +++T+ T FE
Sbjct: 197 YLSAKLKIYDFAKNCVINIMD--NRIWPKEIDKRNF-LSFGINSGDYRLNTKKNTIQRFE 253
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ + +K++G+HN+ N A + ++G+ I + + ++ + PHR
Sbjct: 254 KDLI------HIKFIKIIGQHNHMNFLATLCLSEIIGIPINISLFVISRYSGL----PHR 303
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKFGYSGVLIWKTLV 317
+Q+VH+ GV W++DSK+TN+E+T L +K + K +LLGG + L
Sbjct: 304 LQVVHKK-NGVIWINDSKSTNIESTIAALKSIKANNKIHLLLGGDKRKSKISRLKEFVSY 362
Query: 318 NNGLSIPCFAVANMK------DAVN---------HARRMATNGDAIVLSPGCASFDEFRN 362
+ I CF +K D++ + +GD I+LSP C+S D+F N
Sbjct: 363 KKKIRIYCFGKDKLKFGKLRNDSIVLNTLEQCMLKVSKNTESGDIILLSPACSSLDQFSN 422
Query: 363 FEHRGMVFQELA 374
FEHRG VF E+A
Sbjct: 423 FEHRGSVFSEIA 434
>gi|229528610|ref|ZP_04418000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
12129(1)]
gi|229332384|gb|EEN97870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
12129(1)]
Length = 467
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 137 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 187
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 188 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNAYDTQ 246
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 247 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 292
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 293 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 347
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----- 328
DSKATN+ +T L LK + LL G G + L + + CF V
Sbjct: 348 DSKATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQF 407
Query: 329 ----------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 408 MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 463
>gi|121587626|ref|ZP_01677390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
2740-80]
gi|153818416|ref|ZP_01971083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
NCTC 8457]
gi|153830351|ref|ZP_01983018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
623-39]
gi|255746924|ref|ZP_05420869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
CIRS 101]
gi|262161533|ref|ZP_06030643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
INDRE 91/1]
gi|360036277|ref|YP_004938040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae O1 str. 2010EL-1786]
gi|379742192|ref|YP_005334161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae IEC224]
gi|417814419|ref|ZP_12461072.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-49A2]
gi|418335404|ref|ZP_12944313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-06A1]
gi|418339367|ref|ZP_12948257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-23A1]
gi|418346939|ref|ZP_12951692.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-28A1]
gi|418350696|ref|ZP_12955427.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-43A1]
gi|418355998|ref|ZP_12958717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-61A1]
gi|421318515|ref|ZP_15769083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1032(5)]
gi|421325950|ref|ZP_15776474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1041(14)]
gi|421333564|ref|ZP_15784041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1046(19)]
gi|422897494|ref|ZP_16934933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-40A1]
gi|422903692|ref|ZP_16938657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-48A1]
gi|422907577|ref|ZP_16942370.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-70A1]
gi|422914417|ref|ZP_16948921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HFU-02]
gi|422926621|ref|ZP_16959633.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-38A1]
gi|423145944|ref|ZP_17133537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-19A1]
gi|423150620|ref|ZP_17137933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-21A1]
gi|423154454|ref|ZP_17141618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-22A1]
gi|423157522|ref|ZP_17144614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-32A1]
gi|423731954|ref|ZP_17705255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-17A1]
gi|423770797|ref|ZP_17713520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-50A2]
gi|423896731|ref|ZP_17727563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-62A1]
gi|423931934|ref|ZP_17731956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-77A1]
gi|424003370|ref|ZP_17746444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-17A2]
gi|424007163|ref|ZP_17750132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-37A1]
gi|424025143|ref|ZP_17764792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-62B1]
gi|424028029|ref|ZP_17767630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-69A1]
gi|424587308|ref|ZP_18026886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1030(3)]
gi|424595964|ref|ZP_18035282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1040(13)]
gi|424599873|ref|ZP_18039051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio Cholerae
CP1044(17)]
gi|424607568|ref|ZP_18046508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1050(23)]
gi|424611386|ref|ZP_18050224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-39A1]
gi|424614210|ref|ZP_18052994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-41A1]
gi|424618179|ref|ZP_18056849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-42A1]
gi|424645922|ref|ZP_18083656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-56A2]
gi|424653693|ref|ZP_18091072.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-57A2]
gi|440710629|ref|ZP_20891277.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
4260B]
gi|443504743|ref|ZP_21071695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-64A1]
gi|443508649|ref|ZP_21075404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-65A1]
gi|443512487|ref|ZP_21079120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-67A1]
gi|443516046|ref|ZP_21082551.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-68A1]
gi|443519837|ref|ZP_21086225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-71A1]
gi|443524733|ref|ZP_21090936.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-72A2]
gi|443532317|ref|ZP_21098331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-7A1]
gi|443536130|ref|ZP_21101997.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-80A1]
gi|443539659|ref|ZP_21105512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-81A1]
gi|449055156|ref|ZP_21733824.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1
str. Inaba G4222]
gi|30316132|sp|Q9KPG5.2|MURD_VIBCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|121548136|gb|EAX58209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
2740-80]
gi|126511049|gb|EAZ73643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
NCTC 8457]
gi|148874158|gb|EDL72293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
623-39]
gi|255735326|gb|EET90726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
CIRS 101]
gi|262028844|gb|EEY47498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
INDRE 91/1]
gi|340036905|gb|EGQ97881.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-49A2]
gi|341619867|gb|EGS45654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-70A1]
gi|341619975|gb|EGS45761.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-48A1]
gi|341620672|gb|EGS46438.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-40A1]
gi|341636229|gb|EGS60931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HFU-02]
gi|341645622|gb|EGS69751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-38A1]
gi|356416439|gb|EHH70070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-06A1]
gi|356417297|gb|EHH70915.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-21A1]
gi|356422188|gb|EHH75671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-19A1]
gi|356427659|gb|EHH80900.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-22A1]
gi|356428327|gb|EHH81554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-23A1]
gi|356429467|gb|EHH82683.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-28A1]
gi|356438992|gb|EHH91992.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-32A1]
gi|356445192|gb|EHH98001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-43A1]
gi|356452496|gb|EHI05175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-61A1]
gi|356647431|gb|AET27486.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae O1 str. 2010EL-1786]
gi|378795702|gb|AFC59173.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae IEC224]
gi|395916773|gb|EJH27603.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1032(5)]
gi|395917788|gb|EJH28616.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1041(14)]
gi|395928966|gb|EJH39719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1046(19)]
gi|395957799|gb|EJH68319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-56A2]
gi|395958258|gb|EJH68756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-57A2]
gi|395960906|gb|EJH71257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-42A1]
gi|395972113|gb|EJH81725.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1030(3)]
gi|408006240|gb|EKG44409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-39A1]
gi|408011032|gb|EKG48869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-41A1]
gi|408030692|gb|EKG67344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1040(13)]
gi|408040709|gb|EKG76874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio Cholerae
CP1044(17)]
gi|408041986|gb|EKG78062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
CP1050(23)]
gi|408622399|gb|EKK95383.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-17A1]
gi|408632924|gb|EKL05345.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-50A2]
gi|408653526|gb|EKL24688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-77A1]
gi|408654019|gb|EKL25162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-62A1]
gi|408844262|gb|EKL84394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-37A1]
gi|408845019|gb|EKL85140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-17A2]
gi|408869532|gb|EKM08828.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-62B1]
gi|408878305|gb|EKM17315.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-69A1]
gi|439973958|gb|ELP50162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
4260B]
gi|443430822|gb|ELS73380.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-64A1]
gi|443434652|gb|ELS80804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-65A1]
gi|443438545|gb|ELS88265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-67A1]
gi|443442582|gb|ELS95890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-68A1]
gi|443446471|gb|ELT03135.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-71A1]
gi|443449186|gb|ELT09487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-72A2]
gi|443457707|gb|ELT25104.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-7A1]
gi|443460633|gb|ELT31717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-80A1]
gi|443464789|gb|ELT39450.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HC-81A1]
gi|448265198|gb|EMB02433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1
str. Inaba G4222]
Length = 440
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 186/407 (45%), Gaps = 65/407 (15%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------------- 328
T L LK + LL G G + L + + CF V
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARF 389
Query: 329 -ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 390 YDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|381187413|ref|ZP_09894977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
frigoris PS1]
gi|379650541|gb|EIA09112.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
frigoris PS1]
Length = 443
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 190/381 (49%), Gaps = 38/381 (9%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L++ G V+SE++FAA R+I I +TG+NGK+T V +L G+
Sbjct: 74 KAPIVKKLIERGIPVISEIEFAAP-FTRAITI-GITGSNGKTTTTMLVYHLLKSAGLNVG 131
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+G ++ ++ KF V+E+SS+Q++ Y P ++++ N++PDHL
Sbjct: 132 LGGNIGKSFAQQV--------AEDKFDSYVLELSSFQLDGIVDY-KPHIAIITNISPDHL 182
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R+ +NY +K + + + ++ + E +K + I F K
Sbjct: 183 DRYDYKYENYIDSKFRITMNQTEDDYLIYDADDEAIAEWLKNNTTKAKLI-PFSLTKTFN 241
Query: 193 EA---KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
E K + EV +++ ++ + G+HN NA +AA SV L + + + ++
Sbjct: 242 EGAFIKNNNMEVIINQDEFKMETESIALEGKHNMKNA-MAATSVAKL-MQIRKATIRESL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FG 306
+ HR++ V + IQ V +++DSKATN+ AT L D V ++GG K +
Sbjct: 300 SNFQGVEHRLEKVLK-IQNVQYINDSKATNVNATFFAL-DSMNSPTVWIVGGVDKGNDYN 357
Query: 307 YSGVLIWKTL-------VNNGLSIPCFA--------VANMKDAVNHARRMATNGDAIVLS 351
L+ + + V+N I F V+NM DAV A+R+ GD ++LS
Sbjct: 358 ELMSLVREKVKAIVCLGVDNKKIIDAFGNVVDMMIEVSNMNDAVRMAQRLTEKGDTVLLS 417
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CASFD F N+E RG F++
Sbjct: 418 PACASFDLFENYEDRGNQFKQ 438
>gi|422347524|ref|ZP_16428435.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
perfringens WAL-14572]
gi|373223794|gb|EHP46138.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
perfringens WAL-14572]
Length = 458
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 174/360 (48%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVNGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGVTKEKIKAAFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>gi|374301716|ref|YP_005053355.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
africanus str. Walvis Bay]
gi|332554652|gb|EGJ51696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
africanus str. Walvis Bay]
Length = 435
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 171/366 (46%), Gaps = 55/366 (15%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
++V+SEL+ A+ + S ILAVTGTNGK+T V+ G +L G FVGGN+G PLSE
Sbjct: 98 RKVVSELELASWFV--SEPILAVTGTNGKTTTVSLCGHILRESGKRVFVGGNIGTPLSEY 155
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
+ + V+EVSS+Q++ + F P V V+LN + +HL+ H++M+ Y
Sbjct: 156 LL-------GGERADILVLEVSSFQLQ-NCRTFKPHVGVLLNFSANHLDYHESMEEYLEA 207
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K LF+ L + P ++ + ++ F T+AK +
Sbjct: 208 KLKLFARQTEQDLAIAPL---NMKDELEARGF--------------TKAKRVYY------ 244
Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
V + +++G HN N A L+ GV + + + + HR++ V +
Sbjct: 245 -VPSNRFEGARLLGVHNKANMEAAWLACRAF--GVSDDQARAAVMSFKPLSHRIEPVI-E 300
Query: 266 IQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI--WKTLVNN-GL- 321
GV +VDDSKAT ++A + +L GG K G L+ K V + GL
Sbjct: 301 TGGVLFVDDSKATTIDAMAAAITAFD-RPVRLLAGGVWKGGDVAALVPLLKDRVKSVGLF 359
Query: 322 -------------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
+P F ++ AV A GD I+LSP ASFD +++++ RG
Sbjct: 360 GKAREVFEGAWQGHVPLFWEPTLEPAVKRLYAEAQPGDVILLSPATASFDLYKDYKARGD 419
Query: 369 VFQELA 374
FQ +A
Sbjct: 420 DFQRIA 425
>gi|325280027|ref|YP_004252569.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
splanchnicus DSM 20712]
gi|324311836|gb|ADY32389.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
splanchnicus DSM 20712]
Length = 449
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 110/404 (27%), Positives = 189/404 (46%), Gaps = 51/404 (12%)
Query: 3 MLWLFLLEFQLKATGL-------ACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKS 55
M +F E +K+ G+ L + G V+SE++FA + K++ +TG+NGK+
Sbjct: 56 MDRIFAAELVVKSPGIPDTVPMVVALRERGIEVISEIEFAGR--HTEAKMVCITGSNGKT 113
Query: 56 TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPN 115
T +L GI+A + GN+G L A ++ + VVE+SS+Q++
Sbjct: 114 TTTLLTCHILTTAGIDAGLAGNVGRSL--------AAQVAEDAHPLYVVELSSFQLDGMF 165
Query: 116 KYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG 174
F ++V+ N+TPDHL+R+ +NY +K + ++M L + ++ + ++
Sbjct: 166 D-FRADIAVLTNITPDHLDRYDHKFENYIDSKFRILNNMRPQDLFIYGLDSEAVGHRLRQ 224
Query: 175 HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHN---------MKVMGRHNYHN 225
R G + E T G +QL N + + GRHN +N
Sbjct: 225 VRVVPRMAGFIYADRSIWEKNTCRSGAWMEGEEVVVQLENRQFRIAKQEISIQGRHNVYN 284
Query: 226 AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCT 285
A A L+ + +GV E + + HR++ V R ++GVT+++DSKATN+++
Sbjct: 285 AMAAILACM--QVGVSDEKIAEGLRTFPQVEHRLETV-RVVEGVTYINDSKATNVDSAWY 341
Query: 286 GLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVAN--------------- 330
L + VI + G G +++ + + C V N
Sbjct: 342 ALDSMT--TPVIWIAGGTDKGNDYSVLFDLVRQKVKVLICMGVDNRKLIDNFSGICQVVD 399
Query: 331 ---MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
+KDA+ AR+ A GD ++LSP CASFD F+N+E+RG +F+
Sbjct: 400 THSLKDALAAARQYAVEGDTVLLSPCCASFDLFKNYENRGELFK 443
>gi|421863476|ref|ZP_16295173.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379066|emb|CBX22368.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 445
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 182/382 (47%), Gaps = 53/382 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKAGVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKAKIFRGD----------GVQVLNADDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGDEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------- 304
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKGQDFTPLRDAL 365
Query: 305 ---------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
G I + L GL++ A +++AV A A GD ++LSP CA
Sbjct: 366 KDKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYARAEAGDIVLLSPACA 423
Query: 356 SFDEFRNFEHRGMVFQELAFSA 377
SFD F+ + HR VF E AF A
Sbjct: 424 SFDMFKGYAHRSEVFIE-AFKA 444
>gi|451975660|ref|ZP_21926844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
alginolyticus E0666]
gi|451930403|gb|EMD78113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
alginolyticus E0666]
Length = 437
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/392 (29%), Positives = 181/392 (46%), Gaps = 78/392 (19%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L+ G V+ +++ A + + + +A+TG+NGKSTV G M G++ VGGN
Sbjct: 85 IQAVLEKGTTVVGDIELFAWAVQKPV--IAITGSNGKSTVTDLTGVMAKAAGLDVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEHDADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQ 192
Query: 138 TMKNYALTKCHLFSH----MVN---------TKLGLLPFG--NQHLNEAIKGHRFNLAWI 182
M +Y K +F H +VN ++ L+ FG NQ + G+R W+
Sbjct: 193 GMSDYRQAKLRIFDHADLAVVNRDDQETFPDAEMPLVTFGSDNQDFGLEVDGNR---TWL 249
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGV 240
+D + + + +K++G+HN NA V A L G+D
Sbjct: 250 -------LDHGQRVVASD-------------ELKLVGKHNLSNALVVLALLKAAGVDYHN 289
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILL 299
+ AL + + HR Q+V D QGV WV+DSKATN+ +T L L+ K +L+
Sbjct: 290 ALNALKNYTGL----THRCQVV-ADNQGVKWVNDSKATNIASTMAALSGLESTGKLYLLV 344
Query: 300 GGQAKFGYSGVL--IWKTLVNNGLSIPCFAVA---------------NMKDAVNHARRMA 342
GG K L I+ TL L + CF V M+D +
Sbjct: 345 GGVGKGADFSPLKPIFATL---NLQLCCFGVDGDEFMPLHESAIRFDTMEDVIQQVSSQL 401
Query: 343 TNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
GD ++LSP CASFD+F NF RG F LA
Sbjct: 402 KPGDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|303233989|ref|ZP_07320638.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna BVS033A4]
gi|302494914|gb|EFL54671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna BVS033A4]
Length = 441
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 184/366 (50%), Gaps = 32/366 (8%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+S+L+ A Q I IKI+A+TGTNGK+T + + +MLN G +A GN+G +
Sbjct: 83 EVVSDLELA-QRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGMLWEI 141
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ S K + V+E SS+Q+E K+F P S ++N+TPDH++ H +MKNY K
Sbjct: 142 YN-----SDKDTY--FVIECSSFQLE-STKHFKPQYSCIINITPDHIDWHGSMKNYVNAK 193
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + +L +++ E K + N+ I ++ + K S
Sbjct: 194 KNVLKNQDENCYTVLNADDEYYEECKKFTKANIYDISTSKNIERGSFIKDNSIYFSDSYC 253
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L ++K++G HNY N L IG++ +++ T+ HR++ V RD+
Sbjct: 254 DKIIDLKDVKLIGYHNYQNVLFCV--TLAKLIGINDDSIRETLMSFSGVEHRLEFV-RDL 310
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------FGYSGVLIWKTLVNNG 320
GV + +DSK TN++A+ + + +IL GG K F +G +K L+ G
Sbjct: 311 SGVKYYNDSKGTNVDASVKAIESFDKN-VIILAGGYDKKVSLDNFFIAGKDKFKALILMG 369
Query: 321 LSIPCFA-------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
+ F V +MK AV A ++A +GD ++LSP AS+ + N+E RG
Sbjct: 370 QTRDLFEQKAKEYGFKNIYLVDDMKQAVTQANKIAESGDVVLLSPASASWGMYNNYEERG 429
Query: 368 MVFQEL 373
F++L
Sbjct: 430 NEFKDL 435
>gi|46446885|ref|YP_008250.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase murD [Candidatus
Protochlamydia amoebophila UWE25]
gi|62900536|sp|Q6MBS4.1|MURD_PARUW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|46400526|emb|CAF23975.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
[Candidatus Protochlamydia amoebophila UWE25]
Length = 444
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 176/367 (47%), Gaps = 41/367 (11%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
K V+ E++ + SI + VTGTNGK+TV + +LN G++A GN+G PL+
Sbjct: 96 KEVIGEIELGCRASCHSI--IGVTGTNGKTTVTLLITHILNANGLKAKALGNVGTPLTRE 153
Query: 86 AFHCIALPSSKPKFQ-VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
FQ +AV+E+SSYQ++ + +VVLN+TPDHLER++TM+NYA
Sbjct: 154 ILTL--------DFQEIAVLELSSYQLDTFQQQVLDE-AVVLNITPDHLERYETMENYAK 204
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+K + + K G L + E F + G P T+ + E
Sbjct: 205 SKFQIGKCL--KKSGKLFVERKAAVEYQHLLNFPHSTYGYLPSCHTYTDLCSVFLEG--- 259
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ Q +L ++ G+ N+ + A + G+ + ++ + P HR++ V
Sbjct: 260 --MQQFEL-PLEWQGKENHDLENLLAAYAICARRGIKPQQFLQALKTFQKPSHRVEFV-L 315
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVL---IWKTLVNN-- 319
+ G+ + DDSK TN++A + + ++ V L+ G G S V ++K V
Sbjct: 316 EKNGIHFYDDSKGTNIDAVMRAVQSI--NRPVFLIAGGVDKGASYVAWLNVFKGHVKKVY 373
Query: 320 -------------GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
L I AN+ DAV A + A GDA++LSPGCASFD F+++ HR
Sbjct: 374 AIGQAANKIQKELSLHIRVQIEANLDDAVKQAYQDAKEGDAVLLSPGCASFDMFKDYIHR 433
Query: 367 GMVFQEL 373
G F+ L
Sbjct: 434 GEEFKRL 440
>gi|385810783|ref|YP_005847179.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ignavibacterium
album JCM 16511]
gi|383802831|gb|AFH49911.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ignavibacterium
album JCM 16511]
Length = 448
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 190/381 (49%), Gaps = 54/381 (14%)
Query: 23 QSGK-RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
QS K +V+SEL+FA+ + I+ +TGTNGK+T + G + N G++ +V GN+G
Sbjct: 88 QSKKIKVISELEFASWFCKGT--IVGITGTNGKTTTTSLCGYLFNECGVKTYVAGNIGLA 145
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMK 140
SE A + + +E+SS+Q+++ +K F P V+++LN+TPDHL R++ +++
Sbjct: 146 FSEIADQV-------KENEFVSLEISSFQLDLIDK-FNPKVAMILNITPDHLNRYENSVE 197
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA----FPGVKIDTE--- 193
YAL+K ++ + + +L ++ LN+ I H+ W + G +DT
Sbjct: 198 KYALSKQRIYKNQTENEFLILNRDSELLNQYILQHKSKTFWYSTKEKVYDGCWLDTNRVV 257
Query: 194 -AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
++ + E ++++ + G HN NA ++ D E + + ++
Sbjct: 258 FSRNGNEEFSC-------NVNDILIRGEHNIQNAMAVIIAAKIFDFK--NEKIIAALKTF 308
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
R HR++ V ++I+G+ +++DSKATN+++ L ++LGG K
Sbjct: 309 RGVEHRLEFV-KEIEGIKFINDSKATNIDSVIVALKSF-DEPIFLILGGLDKGNDYSTIE 366
Query: 305 ------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
G S I+ N + ++++ V A A GD ++LSP
Sbjct: 367 ELVIKKVQKIYAIGSSAEKIFNYFHN---KVKTEIRKDLEEVVASALSEARAGDVVLLSP 423
Query: 353 GCASFDEFRNFEHRGMVFQEL 373
CASFD F N+EHRG VF+E+
Sbjct: 424 ACASFDMFENYEHRGKVFKEI 444
>gi|194335053|ref|YP_002016913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prosthecochloris
aestuarii DSM 271]
gi|194312871|gb|ACF47266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
aestuarii DSM 271]
Length = 469
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 184/395 (46%), Gaps = 77/395 (19%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQML-NHL---GIEAFVGGNLGNPLS 83
V SE++ A+ P +I+AVTGT+GK+T T + + +H G F GN+G P S
Sbjct: 97 VYSEIEAASWFCP--ARIIAVTGTDGKTTTATLIAAICADHALAAGYRVFSVGNIGVPFS 154
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNY 142
++ S +AVVEVSSYQ+E +F P ++++ N+TPDHL+R+ +M+ Y
Sbjct: 155 -------SMVGSMASGDIAVVEVSSYQLE-GCTWFRPDIALMTNITPDHLDRYDGSMRLY 206
Query: 143 ALTKCHLFSH-------MVNT-----------KLGLLP----FG---NQHLNEAIKGHRF 177
A K +FS +VN +LG++P FG + A G
Sbjct: 207 AEAKYRIFSRQRQDDTLIVNADDPILRQRFEERLGVVPQLAAFGLDAGRTRAFAASGAVT 266
Query: 178 NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237
WI F +D V++ L MGRHN NA AAL+
Sbjct: 267 EGGWITLFKSGSLDER------------VIAHEDLLKRGFMGRHNLSNALAAALAAD--A 312
Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
GV + ++ ++ HR + V +I GV ++DSKATNL A L + G V+
Sbjct: 313 AGVPLSSIKRALKAFGGVEHRQEYVC-EIDGVICINDSKATNLNAMRQALEAVSG-PVVL 370
Query: 298 LLGGQAKFGYSGVLIWKTLVNN-------------------GLSIPCFAVANMKDAVNHA 338
+ GG+ K G L + LV + G S+P ++++AV
Sbjct: 371 IAGGRDKDGDYREL--RDLVASKVEMLVALGEAADRFTGAYGESVPAVTAGSLREAVRLG 428
Query: 339 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ A G ++ SPGC+SFD F NFEHRG +F+ +
Sbjct: 429 LQHARRGSTLLFSPGCSSFDMFDNFEHRGAMFKSI 463
>gi|408418665|ref|YP_006760079.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase MurD
[Desulfobacula toluolica Tol2]
gi|405105878|emb|CCK79375.1| MurD: UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase
[Desulfobacula toluolica Tol2]
Length = 451
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 179/371 (48%), Gaps = 40/371 (10%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+G + ELD ++ + I+A+TGTNGK+T T +G ML G+ FVGGN+G PL
Sbjct: 89 DNGVGITGELDIFSRY--NDLPIIAITGTNGKTTTTTLIGDMLKACGMNPFVGGNIGTPL 146
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ H + K + V E+SS+Q+++ K F P V V+LN++ DHL+R+ + Y
Sbjct: 147 VD---HLM----DKKNTDIIVAEISSFQLDLA-KRFKPDVGVLLNISEDHLDRYDSYSAY 198
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
+K +F H + ++ NQ +NE K + + I AF K A+
Sbjct: 199 KDSKWRIFKHQDASDKAII---NQSVNEFDKKSQKLKSMIFAFSSQKSIQTQWGANIGSD 255
Query: 203 AVGVVSQLQLHNMK------VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ ++++ H +K + GRHN N A A L+ LG G + + ++ +
Sbjct: 256 TIDIITKNVSHKIKAAQVKGLQGRHNRENIAAAVLACLGA--GAKMSGILKGLKTFKNLA 313
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI---- 312
HR++ + + I G+++ +DSKATN +A L + + +++LGG+ K +LI
Sbjct: 314 HRIEFI-KTINGISFYNDSKATNTDAVIRAL-ECFDNNIILILGGREKDTDFSLLIKAVK 371
Query: 313 -----------WKTLVNNGLSIPCFA--VANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
KT + N C M AV A A D I+LSP CASFD
Sbjct: 372 QKVKTIVAIGESKTHIKNTFETVCIVKKAQTMNHAVQKAFDSAAKNDIILLSPACASFDM 431
Query: 360 FRNFEHRGMVF 370
+ N+ RG F
Sbjct: 432 YENYASRGDDF 442
>gi|422875404|ref|ZP_16921889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
perfringens F262]
gi|380303615|gb|EIA15915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
perfringens F262]
Length = 458
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 174/360 (48%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGVTKEKIKAVFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>gi|398937643|ref|ZP_10667352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM41(2012)]
gi|398166760|gb|EJM54851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM41(2012)]
Length = 448
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 171/356 (48%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLNGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G LI +
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAEFKDLRDPVAANCRAVVLMGRDSDLIAQ 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G +P V ++ +AV R +A GDA++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDGVPLIRVNSLIEAVEQCRAIAETGDAVLLSPACASFDMFKNYEDRGHQF 440
>gi|78042912|ref|YP_360890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Carboxydothermus hydrogenoformans Z-2901]
gi|122063239|sp|Q3AAE4.1|MURD_CARHZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|77995027|gb|ABB13926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 451
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 193/395 (48%), Gaps = 36/395 (9%)
Query: 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
W L + L +A L+ G V+ E++ A + + I+AVTGTNGK+T +++
Sbjct: 69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
G++L G + + GN+G PL EA + ++ +EVSS+Q+E K F P
Sbjct: 127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
V+V+LNLTPDHL+RHKT++ Y K +F + T + +L + + + + + +
Sbjct: 177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236
Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
++ K V ++GV + + + N+ + G HN NA + GV
Sbjct: 237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENALATVAACWSF--GV 294
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
+ + + + HR++ V +I GV +V+DSK TN ++T L + V++ G
Sbjct: 295 SGKNIERGLRNFQGVAHRLEKVA-EINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352
Query: 301 GQAK---FGYSGVLIWKTLVNNGLSIPC---------------FAVA-NMKDAVNHARRM 341
G+ K FG I + + L C + VA + +DAV A+ +
Sbjct: 353 GRNKGNSFGELAREIREKVRFTILVGECREELKEALEMVGYDKYVVAESFEDAVKKAKEL 412
Query: 342 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
A GD ++LSP AS+D F+N+E RG +F+ L +
Sbjct: 413 ARPGDVVLLSPAAASWDMFKNYEERGELFKRLVLN 447
>gi|421352109|ref|ZP_15802474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-25]
gi|395952554|gb|EJH63168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HE-25]
Length = 440
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 185/407 (45%), Gaps = 65/407 (15%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAGAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------------- 328
T L LK + LL G G + L + + CF V
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARF 389
Query: 329 -ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 390 YDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|297588289|ref|ZP_06946932.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna ATCC 53516]
gi|297573662|gb|EFH92383.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna ATCC 53516]
Length = 441
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 183/366 (50%), Gaps = 32/366 (8%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+S+L+ A Q I IKI+A+TGTNGK+T + + +MLN G +A GN+G +
Sbjct: 83 EVVSDLELA-QRIFEDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGMLWEI 141
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ S K + V+E SS+Q+E K F P S ++N+TPDH++ H +M+NY K
Sbjct: 142 YN-----SDKDTY--FVIECSSFQLE-STKNFKPQYSCIINITPDHIDWHGSMQNYVNAK 193
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + +L +++ E K + N+ + VK + K S
Sbjct: 194 KNVLKNQDENCYTVLNVDDEYYEECKKFTKSNVYDVSTSTDVKKGSFIKDDSIYFSDSDC 253
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L ++K++G HNY N L IG++ +++ T+ HR++ V R++
Sbjct: 254 NKIIDLKDVKLIGYHNYQNVLFCV--TLAKLIGINDDSIRQTLMSFSGVEHRLEFV-REL 310
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------FGYSGVLIWKTLVNNG 320
GV + +DSK TN++A+ + + +IL GG K F +G +K L+ G
Sbjct: 311 SGVKYYNDSKGTNVDASVKAIESFDKN-VIILAGGYDKKVSLDNFFIAGKDKFKALILMG 369
Query: 321 LSIPCFA-------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
+ F V +MK AV A ++A +GD ++LSP AS+ + N+E RG
Sbjct: 370 QTRDLFEKKAREYGFGNIFLVDDMKQAVTQANKIAESGDVVLLSPASASWGMYNNYEERG 429
Query: 368 MVFQEL 373
F+EL
Sbjct: 430 NEFKEL 435
>gi|373947900|ref|ZP_09607861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS183]
gi|386326252|ref|YP_006022369.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
BA175]
gi|333820397|gb|AEG13063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
BA175]
gi|373884500|gb|EHQ13392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS183]
Length = 439
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 114/371 (30%), Positives = 177/371 (47%), Gaps = 50/371 (13%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+M GI VGGN+G P
Sbjct: 90 GIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMAREAGIAVAVGGNIGVP-- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AL + V+E+SS+Q+E + C V+ LN++ DH++R+ + Y
Sbjct: 148 -------ALDLLHENADLFVLELSSFQLETTHSLKC-VVATCLNISEDHMDRYSDIAAYR 199
Query: 144 LTKCHLFSHM------VNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
K L+ + KL + P E + + F LA A D++
Sbjct: 200 EAKLRLYKQSRAVLFNRDDKLTVPP-------EPMNQNSFGLAAPEADEWGISDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
S E+ + + + ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 SSEI--------MPITEVSLIGSHNHAN-LLAAMALVDA-VGVDKQVMAKVARSFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAK---FGYSGVLI 312
R ++V GVT+V+DSKATN+ AT L L H +++ GG K F GV +
Sbjct: 303 RCEVVGIK-NGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFKPLGVAL 361
Query: 313 WK-----TLVNNGLSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
K TL +G I V M AV A +AT+GD ++LSP CAS D + N
Sbjct: 362 AKVTHLITLGRDGKKIAALKDGAVKVDTMAAAVTKAAELATSGDIVLLSPACASLDMYSN 421
Query: 363 FEHRGMVFQEL 373
F RG F+ L
Sbjct: 422 FMARGDDFRNL 432
>gi|388470745|ref|ZP_10144954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
synxantha BG33R]
gi|388007442|gb|EIK68708.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
synxantha BG33R]
Length = 448
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 169/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGVP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L F G I E K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGMPCWTFGLGKPD-FKGFGIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ +++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLASLRTFAGLEHRCQWV-RDLNGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G LI
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGADFKDLANPVAAHCRAVVLMGRDSDLIAA 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L G ++P ++ DA+ H + +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 388 AL---GDAVPQVRATSLDDAIAHCKALAQPGDAVLLSPACASFDMFKNYEERGQLF 440
>gi|168218219|ref|ZP_02643844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens NCTC 8239]
gi|182379758|gb|EDT77237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens NCTC 8239]
Length = 458
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 174/360 (48%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGITKEKIKAAFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>gi|336451749|ref|ZP_08622186.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Idiomarina sp.
A28L]
gi|336281562|gb|EGN74842.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Idiomarina sp.
A28L]
Length = 451
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 181/369 (49%), Gaps = 37/369 (10%)
Query: 23 QSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+G ++S+++ FA +V + ++ VTG+NGKSTVV +L GI A GN+G P
Sbjct: 92 DAGVEMISDIELFAWEV---EVPVVGVTGSNGKSTVVELTTHILRQCGINAVAAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ ++ LP +K K V+E+SS+Q+E+ N T + +LN++ DHL+R+ +
Sbjct: 149 VLDSL-----LPGAK-KADCYVLELSSFQLELVNSLQL-TAATILNISSDHLDRYDDERG 201
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ H TKL + + + L G+ K D T E+
Sbjct: 202 YERAKHRIYQH---TKLCVWNRDDTKTKPLFRRQGMQLISFGSTDAAK-DFGITTVKDEL 257
Query: 202 PAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
A+ ++ ++ + + G HN N VA L +GV++ + + ++ PHR
Sbjct: 258 -ALTYANKPFIKESELPIQGTHNLLNVQVAV--ALAQALGVNLAEAVAGLAGYKSLPHRC 314
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAKFGYSGVL----- 311
++V + + V W+DDSKATN AT + ++ K +++ GG AK VL
Sbjct: 315 ELVG-EFEKVRWIDDSKATNPGATIAAIEGIRASAKGKLILIAGGDAKGADLSVLKDSLA 373
Query: 312 ---IWKTLVNNGLSIP-----CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
I TL +G I V ++ +AV +A + AT ++LSP CAS D F+N+
Sbjct: 374 QVDILITLGRDGDKIAEQKTRSRKVHSLNEAVAYAAKEATENSVVLLSPACASLDMFKNY 433
Query: 364 EHRGMVFQE 372
RG F+E
Sbjct: 434 AERGQKFRE 442
>gi|169824312|ref|YP_001691923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
ATCC 29328]
gi|167831117|dbj|BAG08033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
ATCC 29328]
Length = 441
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 183/366 (50%), Gaps = 32/366 (8%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+S+L+ A Q I IKI+A+TGTNGK+T + + +MLN G +A GN+G +
Sbjct: 83 EVVSDLELA-QRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGMLWEI 141
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ S K + V+E SS+Q+E K F P S ++N+TPDH++ H +M+NY K
Sbjct: 142 YN-----SDKDTY--FVIECSSFQLE-STKNFKPQYSCIINITPDHIDWHGSMQNYVNAK 193
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + +L +++ E K + N+ I VK + K S
Sbjct: 194 KNVLKNQDENCYTVLNADDEYYEECKKFTKANVYDISTSKNVKRGSFIKDNSIYFSDSDC 253
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L ++K++G HNY N L IG++ +++ T+ HR++ V RD+
Sbjct: 254 DKIIDLKDVKLIGYHNYQNVLFCV--TLAKLIGINDDSIRETLMSFSGVEHRLEFV-RDL 310
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------FGYSGVLIWKTLVNNG 320
GV + +DSK TN++A+ + + +IL GG K F +G +K L+ G
Sbjct: 311 SGVKYYNDSKGTNVDASVKAIESFDKN-VIILAGGYDKKVSLDNFFIAGKDKFKALILMG 369
Query: 321 LSIPCFA-------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
+ F V +MK AV A ++A +GD ++LSP AS+ + N+E RG
Sbjct: 370 QTRDLFEQKAKEYGFKHIYLVDDMKQAVTQANKIAESGDVVLLSPASASWGMYNNYEERG 429
Query: 368 MVFQEL 373
F++L
Sbjct: 430 NEFKDL 435
>gi|451823281|ref|YP_007459555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776081|gb|AGF47122.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 495
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 188/398 (47%), Gaps = 76/398 (19%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
R++ +L PR I+A+TGTNGK+TV + +L+++G+ GN+G P+
Sbjct: 114 RILDDLYKDINYCPR---IIAITGTNGKTTVTSLCHYILHNIGVSVCKAGNIGPPVITVL 170
Query: 87 FHCIA---LPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ LP V VVE+SS+Q+ K VSVVLNL DH++ H +++Y
Sbjct: 171 MDLLKANKLP------DVWVVELSSFQL-FNVKSLKIEVSVVLNLDFDHIDWHGDIESYW 223
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+K + + TK L+ + + E K + ++ G ID +K+ F +
Sbjct: 224 DSKISIINF---TKTSLINRNDPKIVEKSKRLKDDIYSFG------IDKPSKSGCFGMVL 274
Query: 204 VG-----VVSQLQLHNM------------------------KVMGRHNYHNAAVAALSVL 234
G V+ +L+ N+ K+ G HNY N +AAL ++
Sbjct: 275 YGGNKWLVLYKLETDNLNLINDADSYFYDNSLVYLLKADLLKIKGDHNYANV-LAALQLI 333
Query: 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHK 294
I E + + R HR++ + ++ GV ++DDSKATN+ AT L K
Sbjct: 334 SF-ITPITEKIIDVLCHYRGEHHRIEFI-SEVNGVKYIDDSKATNISATIAALRSCCNKK 391
Query: 295 CVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDA 334
+++ GG K G S I++ + + +IPCF V +M++A
Sbjct: 392 AILIAGGLGKGQDFSQLRDAIVEYTKSIILLGSSKFDIFEIIKDT--NIPCFFVDSMEEA 449
Query: 335 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
V + ++AT GD ++LSP C+S D F++++HRG +F +
Sbjct: 450 VLKSFQIATPGDIVLLSPACSSLDMFKDYDHRGKIFAK 487
>gi|262404717|ref|ZP_06081272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
gi|262349749|gb|EEY98887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
Length = 440
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 189/413 (45%), Gaps = 77/413 (18%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L G V+ +++ A + + ++A+TG+NG
Sbjct: 61 WNLEWLLSADLVVTNPGIALATAEIQQVLAVGIPVVGDIELFAWHVDK--PVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTK-----------L 158
+ + LNL+ DH++R++ M++Y K +F H +VN L
Sbjct: 170 TSSLKLKA-AAFLNLSEDHMDRYQGMEDYRQAKLRIFGHAETAVVNADDTQTFPDRAAHL 228
Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
++ FG +H +F++A + EA A E + ++
Sbjct: 229 QVVTFGVEH------AAQFSVAQHQGREYLFAHDEAVMACDE--------------LSLV 268
Query: 219 GRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+DSK
Sbjct: 269 GRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-VDNHGIKWVNDSK 323
Query: 277 ATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------- 328
ATN+ +T L LK + LL G G + L + + CF V
Sbjct: 324 ATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGDKFMPL 383
Query: 329 -------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 384 HSSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|260591742|ref|ZP_05857200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
veroralis F0319]
gi|260536026|gb|EEX18643.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
veroralis F0319]
Length = 443
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 183/377 (48%), Gaps = 43/377 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + + K++ +TG+NGK+T + + + G + + GN+GN
Sbjct: 82 LMAKGTHIISEIEFAGRYT--NSKMICITGSNGKTTTTSLIYHIFKDAGYDVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDPHAYYIIELSSFQLD--NMYNFRANIAILLNITPDHLDRYDFK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + + + + + +K + + +P ++
Sbjct: 190 FENYADAKMRIIQNQTKDDSFIYWNDDPVIKKELKKYDVHAV---CYPFSELKEHGSIGY 246
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILR 253
E + ++ ++ + GRHN +N+ A ++ +I G+ E++ ++
Sbjct: 247 IEEGQYKIEQPEPFNMEQEDLSLTGRHNIYNSLAAGIAS---NISGIKKESIRKSLSDFP 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV--- 310
HR++ V + + GV +++DSKATN++A L ++ +IL G YS +
Sbjct: 304 GVEHRLEKVCK-VAGVQYINDSKATNVDACWYALESMRTPTILILGGKDKGNDYSAIKDL 362
Query: 311 -------LIW-----KTLVNN--GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
L++ K L +N L IP +MKD V MA GD ++LSP CAS
Sbjct: 363 VKEKCTGLVYLGADNKKLHDNFDSLGIPVRDTHSMKDCVTACAEMAKPGDTVLLSPCCAS 422
Query: 357 FDEFRNFEHRGMVFQEL 373
FD F+N E RG F+ L
Sbjct: 423 FDLFKNMEDRGDQFKAL 439
>gi|336407786|ref|ZP_08588282.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_56FAA]
gi|375356688|ref|YP_005109460.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Bacteroides fragilis 638R]
gi|383116600|ref|ZP_09937348.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_2_5]
gi|423248261|ref|ZP_17229277.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL03T00C08]
gi|423253210|ref|ZP_17234141.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL03T12C07]
gi|423259356|ref|ZP_17240279.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL07T00C01]
gi|423263672|ref|ZP_17242675.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL07T12C05]
gi|251948126|gb|EES88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
3_2_5]
gi|301161369|emb|CBW20909.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Bacteroides fragilis 638R]
gi|335944865|gb|EGN06682.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_56FAA]
gi|387776936|gb|EIK39036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL07T00C01]
gi|392657110|gb|EIY50747.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL03T12C07]
gi|392660368|gb|EIY53982.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL03T00C08]
gi|392707094|gb|EIZ00214.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL07T12C05]
Length = 444
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 190/383 (49%), Gaps = 56/383 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGY 307
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDY 356
Query: 308 SGV----------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIV 349
+ + L++ L N + L +P V MKDAV A ++A G+ ++
Sbjct: 357 TEIEELVREKCSALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVL 416
Query: 350 LSPGCASFDEFRNFEHRGMVFQE 372
LSP CASFD F+++E RG F++
Sbjct: 417 LSPCCASFDLFKSYEDRGEQFKK 439
>gi|265764983|ref|ZP_06093258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_16]
gi|263254367|gb|EEZ25801.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_16]
Length = 444
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 190/383 (49%), Gaps = 56/383 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGY 307
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDY 356
Query: 308 SGV----------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIV 349
+ + L++ L N + L +P V MKDAV A ++A G+ ++
Sbjct: 357 TEIEELVREKCSALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVL 416
Query: 350 LSPGCASFDEFRNFEHRGMVFQE 372
LSP CASFD F+++E RG F++
Sbjct: 417 LSPCCASFDLFKSYEDRGEQFKK 439
>gi|423269850|ref|ZP_17248822.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL05T00C42]
gi|423272696|ref|ZP_17251643.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL05T12C13]
gi|392700696|gb|EIY93858.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL05T00C42]
gi|392708610|gb|EIZ01716.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis CL05T12C13]
Length = 444
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 190/383 (49%), Gaps = 56/383 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGY 307
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDY 356
Query: 308 SGV----------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIV 349
+ + L++ L N + L +P V MKDAV A ++A G+ ++
Sbjct: 357 TEIEELVREKCSALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVL 416
Query: 350 LSPGCASFDEFRNFEHRGMVFQE 372
LSP CASFD F+++E RG F++
Sbjct: 417 LSPCCASFDLFKSYEDRGEQFKK 439
>gi|53711599|ref|YP_097591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
fragilis YCH46]
gi|60679849|ref|YP_209993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
fragilis NCTC 9343]
gi|60389935|sp|Q64ZL9.1|MURD_BACFR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|81174945|sp|Q5LIJ5.1|MURD_BACFN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|52214464|dbj|BAD47057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
fragilis YCH46]
gi|60491283|emb|CAH06031.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Bacteroides fragilis NCTC 9343]
Length = 444
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 190/383 (49%), Gaps = 56/383 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGY 307
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDY 356
Query: 308 SGV----------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIV 349
+ + L++ L N + L +P V MKDAV A ++A G+ ++
Sbjct: 357 TEIEELVREKCSALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVL 416
Query: 350 LSPGCASFDEFRNFEHRGMVFQE 372
LSP CASFD F+++E RG F++
Sbjct: 417 LSPCCASFDLFKSYEDRGEQFKK 439
>gi|126172652|ref|YP_001048801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
baltica OS155]
gi|386339427|ref|YP_006035793.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS117]
gi|125995857|gb|ABN59932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS155]
gi|334861828|gb|AEH12299.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
OS117]
Length = 439
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 175/373 (46%), Gaps = 54/373 (14%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+M GI VGGN+G P
Sbjct: 90 GIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMAREAGIAVAVGGNIGVP-- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AL + V+E+SS+Q+E + C V+ LN++ DH++R+ + Y
Sbjct: 148 -------ALDLLHENADLFVLELSSFQLETTHSLKC-VVATCLNISEDHMDRYSDIAAYR 199
Query: 144 LTKCHLFSHM------VNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
K L+ + KL + P E + + F LA D++
Sbjct: 200 EAKLRLYKQSRAVLFNRDDKLTVPP-------EPMNQNSFGLAAPETDEWGISDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTP 255
S E+ + + + ++G HN+ N AA+A + V +GVD + +
Sbjct: 253 SSEI--------MPITEVSLIGSHNHANLLAAMALVDV----VGVDKQVMAKVARSFTGL 300
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAK---FGYSGV 310
HR ++V GVT+V+DSKATN+ AT L L H +++ GG K F GV
Sbjct: 301 SHRCEVVGIK-NGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFKPLGV 359
Query: 311 LIWK-----TLVNNGLSIPCFA-----VANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
+ K TL +G I V M AV A +AT+GD ++LSP CAS D +
Sbjct: 360 ALAKVTHLITLGRDGKKIAALKDGAVRVETMAAAVTKAAELATSGDIVLLSPACASLDMY 419
Query: 361 RNFEHRGMVFQEL 373
NF RG F+ L
Sbjct: 420 SNFMARGDDFRNL 432
>gi|443242723|ref|YP_007375948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nonlabens
dokdonensis DSW-6]
gi|442800122|gb|AGC75927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nonlabens
dokdonensis DSW-6]
Length = 453
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 179/379 (47%), Gaps = 58/379 (15%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++FAA+ KI+AVTG NGK+TV + + + N +E GGN+G ++
Sbjct: 95 GIEVISEIEFAARFTDE--KIIAVTGANGKTTVTSLIDHIFNVANLEHTTGGNIGKSFAQ 152
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYA 143
+ + K ++EVSS+Q++ + F P ++++LN+TPDHL+R+ +NY
Sbjct: 153 QVY--------EGKSTYRLLEVSSFQLDGIST-FKPHIAILLNITPDHLDRYDYKFENYI 203
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI----------GAFP-GVKIDT 192
+K + + + + + EAIK I GA+ +I
Sbjct: 204 ASKMRITMNQDENDFLIYNTDDPAITEAIKNANIKAQLIPFSMENELEKGAYLLNNQIHI 263
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ F +P + + G+HN NA A+ + L I E + ++
Sbjct: 264 NTHNSLFTMPT---------EQLPIKGKHNTANAMAASTTAKLLQI--RKETIRQSLTSF 312
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI 312
HR++ V + I V +++DSKATN+ AT L D V ++GG K L
Sbjct: 313 EGVEHRLENVLK-INKVQYINDSKATNVNATYYAL-DSMEQPTVWIVGGVDKGNNYKDLY 370
Query: 313 WKTLVNNGL-SIPCFAV-------------------ANMKDAVNHARRMATNGDAIVLSP 352
+LVN + +I C +NM+DAV A ++AT GD ++LSP
Sbjct: 371 --SLVNRKVKAIVCLGTDNSKIVEAFGNCVEQMVETSNMEDAVRVAYKLATAGDNVLLSP 428
Query: 353 GCASFDEFRNFEHRGMVFQ 371
CASFD F+N+E RG F+
Sbjct: 429 ACASFDLFQNYEDRGRQFK 447
>gi|317132325|ref|YP_004091639.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ethanoligenens
harbinense YUAN-3]
gi|315470304|gb|ADU26908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
harbinense YUAN-3]
Length = 458
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 112/378 (29%), Positives = 177/378 (46%), Gaps = 48/378 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V SE++ +V P +I+AVTG++GK+T T + ++L G +GGN+G PL
Sbjct: 96 GVAVTSEMEVFFEVCP--CRIIAVTGSDGKTTTTTLISEILKREGRRVHLGGNIGRPL-- 151
Query: 85 AAFHCIALPSSKP--KFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
LP + + VAVVE+SS+Q+ + P V+V+ N+TP+HL+ HK M Y
Sbjct: 152 -------LPEIETIREDDVAVVELSSFQLISMRR--SPDVAVITNITPNHLDMHKDMVEY 202
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
K H+F H +L F N + E ++G + + P T+A +
Sbjct: 203 IQAKKHIFLHQNGCSKTVLNFDNAITVPMAEEVRGQCLGFS-LKEPPRFGCYTDADGVIW 261
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ + ++ + G HN N AA +V GL E + HR+
Sbjct: 262 FLSGEQKHYVMHRDDILLPGSHNVENYMAAAAAVWGL---AKPETILGVARSFTGVEHRI 318
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------FGYSGVLIW 313
++V R++ GV + +DS AT T GL K +++ GG K G + V
Sbjct: 319 ELV-RELDGVRYYNDSIATTPSRTLAGLRAFS-QKVILIAGGYDKHIPFDVLGPAAVQSV 376
Query: 314 KTLVNNGLSI------------------PCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
K L+ G + P V+ +++AV AR A +GD ++LSP CA
Sbjct: 377 KCLILLGATADKIATAVEGAEGYATGEPPILRVSGLEEAVQTARAQAASGDVVLLSPACA 436
Query: 356 SFDEFRNFEHRGMVFQEL 373
SFD F++FE RG +F+ +
Sbjct: 437 SFDMFKDFETRGDLFKNI 454
>gi|121728372|ref|ZP_01681401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
V52]
gi|147674702|ref|YP_001217905.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
cholerae O395]
gi|262168384|ref|ZP_06036081.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
RC27]
gi|172047587|sp|A5F5N1.1|MURD_VIBC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|121629363|gb|EAX61794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
V52]
gi|146316585|gb|ABQ21124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
O395]
gi|262023276|gb|EEY41980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
RC27]
Length = 440
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 186/408 (45%), Gaps = 67/408 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 117
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 118 GKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 168
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M +Y K +F H +VN P H
Sbjct: 169 TTSSLKL-KAAAFLNLSEDHMDRYQGMGDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 227
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 228 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 273
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 274 TNVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 328
Query: 282 ATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV------------- 328
+T L LK + LL G G + L + + CF V
Sbjct: 329 STLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSAR 388
Query: 329 --ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 389 FYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|254230420|ref|ZP_04923800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
gi|262395261|ref|YP_003287115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
gi|151937053|gb|EDN55931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
gi|262338855|gb|ACY52650.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
Length = 437
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 114/392 (29%), Positives = 178/392 (45%), Gaps = 78/392 (19%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M+ G++ VGGN
Sbjct: 85 IQAVLAKGTTVVGDIELFAWAVQKPV--IAITGSNGKSTVTDLTGVMVKAAGLDVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQ 192
Query: 138 TMKNYALTKCHLFSHMV-------------NTKLGLLPFG--NQHLNEAIKGHRFNLAWI 182
M +Y K +F H + ++ L+ FG NQ + G+R W+
Sbjct: 193 GMSDYRQAKLRIFDHAALAVVNRDDQETFPDAEMPLVTFGSDNQDFGLEVDGNR---TWL 249
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGV 240
+D + + + +K++G+HN NA V A L G+D
Sbjct: 250 -------LDHGQRVVASD-------------ELKLVGKHNLSNALVVLALLKAAGVDYHN 289
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILL 299
+ AL + + HR Q+V D QGV WV+DSKATN+ +T L L+ K +L+
Sbjct: 290 ALNALKNYTGL----THRCQVV-ADNQGVKWVNDSKATNIASTMAALSGLESTGKLYLLV 344
Query: 300 GGQAKFGYSGVL--IWKTLVNNGLSIPCFAVA---------------NMKDAVNHARRMA 342
GG K L I+ TL L + CF M+D +
Sbjct: 345 GGVGKGADFSPLKPIFATL---NLQLCCFGADGDDFMPLHESAIRFDTMEDVIQQVSSQL 401
Query: 343 TNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
GD ++LSP CASFD+F NF RG F LA
Sbjct: 402 KPGDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|227118847|ref|YP_002820743.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
O395]
gi|227014297|gb|ACP10507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
O395]
Length = 467
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 185/407 (45%), Gaps = 65/407 (15%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 88 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 145
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 146 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 196
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M +Y K +F H +VN P HL
Sbjct: 197 TSSLKL-KAAAFLNLSEDHMDRYQGMGDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 255
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 256 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVT 301
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 302 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 356
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------------- 328
T L LK + LL G G + L + + CF V
Sbjct: 357 TLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARF 416
Query: 329 -ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 417 YDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 463
>gi|302380550|ref|ZP_07269015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna ACS-171-V-Col3]
gi|302311493|gb|EFK93509.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
magna ACS-171-V-Col3]
Length = 441
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 182/366 (49%), Gaps = 32/366 (8%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+S+L+ A Q I IKI+A+TGTNGK+T + + +MLN G +A GN+G +
Sbjct: 83 EVVSDLELA-QRIFGDIKIVAITGTNGKTTTTSLMTKMLNDSGRKAISIGNIGVGMLWEI 141
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ S K + V+E SS+Q+E K F P S ++N+TPDH++ H +M+NY K
Sbjct: 142 YN-----SDKDTY--FVIECSSFQLE-STKNFKPQYSCIINITPDHIDWHGSMQNYVNAK 193
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + +L +++ E K + N+ I VK + K S
Sbjct: 194 KNVLKNQDENCYTVLNADDEYYEECKKFTKANVYDISTSKNVKRGSFIKDNSIYFSDSDC 253
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L N+ ++G HNY N L IG++ +++ T+ HR++ V RD+
Sbjct: 254 DKIIDLKNVNLIGYHNYQNVLFCV--TLAKLIGINDDSIRETLMSFSGVEHRLEFV-RDL 310
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------FGYSGVLIWKTLVNNG 320
GV + +DSK TN++A+ + + +IL GG K F +G +K L+ G
Sbjct: 311 SGVKYYNDSKGTNVDASVKAIESFDKN-VIILAGGYDKKVSLDNFFIAGKDKFKALILMG 369
Query: 321 LSIPCFA-------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
+ F V +MK AV A ++A +GD ++LSP AS+ + N+E RG
Sbjct: 370 QTRDLFEQKAKEYGFMNIYLVDDMKQAVTQANKIAESGDVVLLSPASASWGMYNNYEERG 429
Query: 368 MVFQEL 373
F++L
Sbjct: 430 NEFKDL 435
>gi|258514340|ref|YP_003190562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Desulfotomaculum acetoxidans DSM 771]
gi|257778045|gb|ACV61939.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
acetoxidans DSM 771]
Length = 449
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 187/374 (50%), Gaps = 44/374 (11%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ EL+ AA+ I ++A+TGTNGK+T + +G++ + GI+ V GN+G PL
Sbjct: 89 GIEVIGELELAARFI--KAPVVAITGTNGKTTTTSLIGEIFRNNGIKTLVAGNIGLPL-- 144
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ P + V EVSS+Q+E +F P V+V+LN+TPDHL+RH TM+NYA
Sbjct: 145 ----VTEVEKYGPG-DIIVAEVSSFQLET-TVHFRPNVAVILNITPDHLDRHATMQNYAQ 198
Query: 145 TKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFE 200
K +++ +++ +L + + L + G + GV + E A+ +
Sbjct: 199 AKANIYKQQLSSDYTVLNYDDSLTASLAVKVPGRVIFFSRKHILDRGVFVRNEEIIAALD 258
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ ++ +K+ G HN N A+VAA G +GV + L +T++ HR
Sbjct: 259 GDETAIC---RVDEVKIPGAHNLENALASVAA----GFVLGVGRQVLANTLKTFPGVEHR 311
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------FGYSGVLI 312
++ V +I GV +++DSK TN +A GL V++ GG+ K F +
Sbjct: 312 LEFVA-EINGVRYINDSKGTNPDAAVKGLQAY-SQPIVLIAGGRNKGSDFKEFMQAAKEK 369
Query: 313 WKTLVNNGLSIP-------------CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
+T+V G + AV A + A +GD ++LSP CAS+D
Sbjct: 370 VRTMVVLGECAQELLEAAQAVGFGNVIQATDFISAVKLAAQTARSGDVVLLSPACASWDM 429
Query: 360 FRNFEHRGMVFQEL 373
F+N+E RG +F+E+
Sbjct: 430 FKNYEERGRLFKEI 443
>gi|154498031|ref|ZP_02036409.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
29799]
gi|150273021|gb|EDN00178.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 461
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 176/383 (45%), Gaps = 41/383 (10%)
Query: 16 TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
T L + G + SE++ QV P +I+AVTG++GK+T T + ++L G +VG
Sbjct: 91 TPLLAARERGSVITSEMEVFFQVCP--CEIIAVTGSDGKTTTTTIISELLKKAGYNVYVG 148
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G PL P+ +P V V+E+SS+Q+ + P ++VV N+ P+HL+
Sbjct: 149 GNIGKPL------LAETPNMEPDDMV-VLELSSFQLMTMD--MSPDIAVVTNVAPNHLDV 199
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
HK+M+ Y K ++F+H L + + N+ + K N+ ++ K
Sbjct: 200 HKSMEEYVEAKENIFAHQSTENLAVFNWDNEITRDFSKKAPGNVMCFSRREMLERGIYVK 259
Query: 196 -TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
A + G L L ++ + G HN N A +V GL V E +
Sbjct: 260 DDAIWCADRDGHRKVLLLSDILLPGNHNVENYMAAIAAVNGL---VSDETIRLFARSFGG 316
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF--------- 305
HR+++V R + GV + +DS A++ T GL + K +++ GG K
Sbjct: 317 VEHRIELV-RTVDGVRYYNDSIASSPTRTIAGLRSFE-EKVILIAGGYDKHIPFDVLGPE 374
Query: 306 -----------GYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAIVL 350
G + I + N NG + P + + AV A MA GD ++L
Sbjct: 375 IIEHVKELILTGDTAEKIRAAVENAPGYNGSNPPIRMYQDFEQAVLAAHSMAQPGDVVIL 434
Query: 351 SPGCASFDEFRNFEHRGMVFQEL 373
SP CASFD F+NF RG F+ +
Sbjct: 435 SPACASFDRFKNFMERGNAFKRI 457
>gi|153214090|ref|ZP_01949224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
1587]
gi|153826875|ref|ZP_01979542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
MZO-2]
gi|124115516|gb|EAY34336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
1587]
gi|149739291|gb|EDM53547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
MZO-2]
Length = 440
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 166/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P +L P ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------SLDLISPDVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 161 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 219
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 220 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 265
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L G++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 266 SLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 320
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----- 328
DSKATN+ +T L LK + LL G G + L + + CF V
Sbjct: 321 DSKATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQF 380
Query: 329 ----------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 381 MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>gi|319900364|ref|YP_004160092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
helcogenes P 36-108]
gi|319415395|gb|ADV42506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
helcogenes P 36-108]
Length = 444
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 189/378 (50%), Gaps = 42/378 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGTPVISEIEFAGRYT--DAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVATEKHDYYIIELSSFQLD--NMYRFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAK 195
M+NY K + + + + + + H A + F VK D +
Sbjct: 190 MQNYIDAKFRITRNQTPDDAFIYWNDDPIIKRELAKHGLK-AHLYPFASVKEDGAIAYVE 248
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
E+ A + ++ + + G HN +N+ A +S L G++ E + + +
Sbjct: 249 DGEIEINA-PIAFNMEQEELALRGTHNLYNSLAAGISA-NL-AGIEKEYIRKALSDFKGV 305
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV---- 310
HR++ V D++G+ +++DSKATN+ + L + K V++LGG+ K Y+ +
Sbjct: 306 EHRLEKVC-DVRGIHFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTEIEDLV 363
Query: 311 ------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIVLSPGCAS 356
L++ L N + L +P V MKDAV+ A R+A G+ I+LSP CAS
Sbjct: 364 REKCSALVYLGLHNEKLHGFFDRLGLPVADVQTGMKDAVDAAFRLAKKGETILLSPCCAS 423
Query: 357 FDEFRNFEHRGMVFQELA 374
FD F+++E RG F+ A
Sbjct: 424 FDLFKSYEDRGDQFKACA 441
>gi|261367771|ref|ZP_05980654.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
variabile DSM 15176]
gi|282570568|gb|EFB76103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
variabile DSM 15176]
Length = 465
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 121/398 (30%), Positives = 182/398 (45%), Gaps = 53/398 (13%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
++ L L++G V SE++ + P +I+AVTG++GK+T T + +M+ G
Sbjct: 87 YEYYKPELQAALKAGAMVTSEVELFFEFCP--CEIIAVTGSDGKTTTTTLISKMMEAAGR 144
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+ F+GGN+G L L P+ VAVVE+SS+Q+ + P V+VV N+TP
Sbjct: 145 KVFLGGNIGAAL------LPQLADVTPE-AVAVVELSSFQLISMRR--SPKVAVVTNVTP 195
Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWI 182
+HL+ HK M+ Y K ++ V +L + N+ + KG R +
Sbjct: 196 NHLDHHKDMQEYIDAKRNILLWQVPPCRAVLGYENEISRSMQSDCKGEQVWFTRLHETDN 255
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
GAF + DT + V V S+++L G HN N A +V G V V
Sbjct: 256 GAFLRAEDDTLCYAENGTVTPVVARSEVKLR-----GLHNVENLLAAIAAVWGR---VPV 307
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG- 301
EA+ HR++ V R + GVT+ +DS A++ T GL K +++ GG
Sbjct: 308 EAMRQVASTFTGVEHRIEPV-RTLDGVTYYNDSIASSPTRTIAGLRSFD-QKIILIAGGY 365
Query: 302 QAKFGYSGVLIW-----KTLVNNGLSIPCFAVA------------------NMKDAVNHA 338
K Y + KTLV G + P A NM+DAV A
Sbjct: 366 DKKIPYEPLAPEILAHVKTLVLMGATAPRIEKAVREHPDFPNSDLKIVHADNMQDAVEKA 425
Query: 339 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
R A GD + LSP ASFD + NFE RG ++ + +
Sbjct: 426 RAAAVPGDVVSLSPASASFDLYPNFEVRGRDYKRIVMA 463
>gi|423690027|ref|ZP_17664547.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
fluorescens SS101]
gi|388001307|gb|EIK62636.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
fluorescens SS101]
Length = 448
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 169/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGVP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L F G I E K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGMPCWTFGLGKPD-FKGFGIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ +++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLASLRTFAGLEHRCQWV-RDLNGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G LI
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGADFKDLKAPVAAHCRAVVLMGRDSDLIAA 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L G ++P A++ DA+ + +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 388 AL---GDAVPQVRAASLDDAIAQCKALAQPGDAVLLSPACASFDMFKNYEERGQLF 440
>gi|357043585|ref|ZP_09105276.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella
histicola F0411]
gi|355368249|gb|EHG15670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella
histicola F0411]
Length = 454
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 184/377 (48%), Gaps = 43/377 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + + K++ +TG+NGK+T + + + + G + + GN+GN
Sbjct: 93 LIAQGTHIISEIEFAGRYT--NSKMICITGSNGKTTTTSLIYHIFKNAGYDVGLAGNIGN 150
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 151 SL--------ALQVAESPHAYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYK 200
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + TK + N + +F++ + +P ++ +
Sbjct: 201 FENYADAKMRIIQNQ--TKEDSFIYWNDDPVIRKELEKFDVHAV-CYPFSELKEKGSIGY 257
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILR 253
E + ++ ++ + G+HN +N+ A ++ DI G+ E + ++
Sbjct: 258 IEEGQYTIEQPEPFNMEQEDLSLTGKHNIYNSLAAGIAS---DISGIKKENIRKSLSDFP 314
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV--L 311
HR++ V + + GV +++DSKATN++A L ++ +IL G Y+ + L
Sbjct: 315 GVEHRLEKVCK-VAGVQYINDSKATNVDACWYALESMRTPTILILGGKDKGNDYNAIKDL 373
Query: 312 IWKTLVN---------------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
+ K V + L IP +MKD V MA GD ++LSP CAS
Sbjct: 374 VKKKCVGLVYLGADNKKLHENFDTLGIPVRDTHSMKDCVAACAEMAKPGDTVLLSPCCAS 433
Query: 357 FDEFRNFEHRGMVFQEL 373
FD F+N E RG F+ L
Sbjct: 434 FDLFKNMEDRGEQFKSL 450
>gi|313667815|ref|YP_004048099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
lactamica 020-06]
gi|313005277|emb|CBN86710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
lactamica 020-06]
Length = 445
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 182/382 (47%), Gaps = 53/382 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVWGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----RAGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ EAL ++ +
Sbjct: 253 TGRLK---QGNEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------- 304
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKGQDFTPLRDAL 365
Query: 305 ---------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
G I + L GL++ A +++AV A A GD ++LSP CA
Sbjct: 366 KDKAKGVFLIGVDAPQIRRDLDGCGLNLT--DCATLEEAVQTAYAQAEAGDIVLLSPACA 423
Query: 356 SFDEFRNFEHRGMVFQELAFSA 377
SFD F+ + HR VF E AF A
Sbjct: 424 SFDMFKGYAHRSEVFIE-AFKA 444
>gi|407363737|ref|ZP_11110269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
mandelii JR-1]
Length = 448
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 173/356 (48%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V R++ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RELDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G LI +
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAEFKDLRDPVAANCRAVVLMGRDSDLIGQ 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P V+++ +AV R +A GDA++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRVSSLDEAVAQCRAVAEPGDAVLLSPACASFDMFKNYEDRGHQF 440
>gi|376296424|ref|YP_005167654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
desulfuricans ND132]
gi|323458985|gb|EGB14850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
desulfuricans ND132]
Length = 434
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 171/373 (45%), Gaps = 57/373 (15%)
Query: 18 LACLLQS--GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
LA +L+ + V+SEL+FA+ I ILAVTG+NGK+T T + ++L G F G
Sbjct: 92 LAPVLEGVPARNVVSELEFASWFI--EAPILAVTGSNGKTTTTTLISEILEKAGRRVFTG 149
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G PL C L +P ++ V+EVSS+Q++ + F P V + LN + +HL+
Sbjct: 150 GNIGVPL------CEYLLDMEPA-EIIVLEVSSFQLQNCLR-FKPHVGLFLNFSANHLDY 201
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
H + Y K HLFS M + LL ++ L+ + G F A I F
Sbjct: 202 HADLDEYLDAKLHLFSRMGPEDIALL---HESLHPLLDGRSFTEAHIEWF--------GP 250
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T FE P ++G HN N A +V GV E I R
Sbjct: 251 TNRFEAP-------------HLLGEHNRSNVEAAWQAV--KRFGVSEEQAAEAIRDFRPL 295
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG------QAKF--GY 307
PHR++ V + GV +V+DSKAT L+A + + IL+GG AKF G
Sbjct: 296 PHRIEPV-AERNGVLYVNDSKATTLDAAEAAVHAFE-RPVRILMGGVWKGGDVAKFAEGI 353
Query: 308 SGVLIWKTLVNNGLSI--PCFAV-------ANMKDAVNHARRMATNGDAIVLSPGCASFD 358
G + L I P A + +AV +A GD ++LSP +SFD
Sbjct: 354 KGRVAAVGLFGGSREILEPELARHFSVTWDETLTEAVRRQAGLAAPGDVVLLSPATSSFD 413
Query: 359 EFRNFEHRGMVFQ 371
++ N RG F+
Sbjct: 414 QYHNMAERGADFK 426
>gi|110801072|ref|YP_697147.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
perfringens ATCC 13124]
gi|168215153|ref|ZP_02640778.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens CPE str. F4969]
gi|118595650|sp|Q0TMJ3.1|MURD_CLOP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|110675719|gb|ABG84706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens ATCC 13124]
gi|170713450|gb|EDT25632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens CPE str. F4969]
Length = 458
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 169/360 (46%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGH--RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
N+ +L++ KG RF+ D + EV + ++ +
Sbjct: 229 ENEITKNLDKEAKGKVVRFSSKKTAGEDAYYKDGKLYVHGKEV--------CKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGVTKEKIKAAFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>gi|399114889|emb|CCG17685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
equigenitalis 14/56]
Length = 478
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 181/389 (46%), Gaps = 56/389 (14%)
Query: 27 RVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+++SE+D + + + IKI+ +TGTNGK+TV + V M + G+++ GN+ S
Sbjct: 102 KIISEIDLFYEAVKSNSKQIKIIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGNI----S 157
Query: 84 EAAFHCIALPSSKPKF-QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+A + K + V +E+SS Q+ Y C S +LN+T DH++ H +M+ Y
Sbjct: 158 PSALTVVCEFEEKNSWPDVISLELSSAQL-FYTDYICLDASTILNITQDHIDWHGSMEAY 216
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS-FEV 201
+K +FSH + F L+ A L + + P K D K + +
Sbjct: 217 IASKKKIFSHSKIAAVDENQFKEFGLSNA-------LVYRDSLPINKEDIGIKEVNGMKW 269
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + MK+ G HN NA A +D+ E L + + HR
Sbjct: 270 FCTTDKNLMPVEAMKIRGNHNVLNAMAAMQLCRAIDLPF--EPLLTALRDYEAHNHRCTY 327
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVN--- 318
V RDIQGV ++DDSK TN+ AT + D V++LGG+ K G ++++L N
Sbjct: 328 V-RDIQGVNFIDDSKGTNVGATVAAI-DGMYRNLVVILGGEGK-GQDFTPLYESLRNRTK 384
Query: 319 -NGL--------------------------SIPCFAVANMKDAVNHARRMATNGDAIVLS 351
NGL +IP V + +AV + ++A +GD ++LS
Sbjct: 385 SNGLKGIVLIGKDKNILSHYLNIKDFKFEETIPVVVVNTIDEAVVESFKLAQSGDLVLLS 444
Query: 352 PGCASFDEFRNFEHRGMVF----QELAFS 376
P CAS D F+N+ RG+ F ELA S
Sbjct: 445 PACASIDMFKNYHERGVKFVEAINELALS 473
>gi|119478638|ref|ZP_01618541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
proteobacterium HTCC2143]
gi|119448415|gb|EAW29666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
proteobacterium HTCC2143]
Length = 453
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 173/378 (45%), Gaps = 38/378 (10%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L +A + SG V ++D + I A+TG+NGK+TV T VG M G A
Sbjct: 81 LDQPAIARAIDSGIIVCGDIDLFCE--EAKAPIAAITGSNGKTTVTTLVGLMAERCGRSA 138
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
VGGN+G P + +P+ + V+E+SS+Q+E + + VLN++ DH
Sbjct: 139 AVGGNIGVPALDLLL--------EPEPDMYVLELSSFQLERAD-VLGFEAATVLNISADH 189
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLL-PFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
++R+ + Y K +F+H + P + E + F L PG+K
Sbjct: 190 MDRYPDLSTYRRAKYRIFNHCKKKIINRADPLAAPYCGEDLDVLSFGLDR----PGLKGF 245
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
E A + + +K++GRHN NA A G +G+++ + +
Sbjct: 246 GLIDVNGVEYLAYQTEPLMAVGALKMVGRHNIENALAALAL--GFAMGLELSLMTEVLSE 303
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAK----- 304
HR Q+V + Q + + +DSK TN+ A + L K +++ GG+ K
Sbjct: 304 FSGLDHRCQLVG-EYQQIKYYNDSKGTNVGAAIAAIEGLAAVAKKVILIAGGEGKGADFS 362
Query: 305 --------FGYSGVLIWKT----LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
F + V+I + L G I ++M+ AV A +A +GDA++LSP
Sbjct: 363 PLLPVLKQFARAIVVIGEASEQLLKLCGDEIIALRASSMQQAVEKAAMLAVSGDAVLLSP 422
Query: 353 GCASFDEFRNFEHRGMVF 370
CASFD F N+EHRG VF
Sbjct: 423 ACASFDMFENYEHRGDVF 440
>gi|260893414|ref|YP_003239511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ammonifex degensii
KC4]
gi|260865555|gb|ACX52661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ammonifex degensii
KC4]
Length = 457
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 182/372 (48%), Gaps = 38/372 (10%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G ++ EL+ A + ++AVTGTNGK+T G + G+ +V GN+G PL
Sbjct: 87 EAGIEIVGELELAFRFA--RAPVVAVTGTNGKTTTTALTGAIFQAAGLRTWVAGNIGLPL 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
SE + ++P+ + VVEVSS+Q+E F P V+V+LNLTPDHL+RH +Y
Sbjct: 145 SEV------VEEARPE-DILVVEVSSFQLET-TSTFKPVVAVILNLTPDHLDRHGDFNSY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F+ + ++ +L + + + + + + V
Sbjct: 197 RQAKARIFARQTDKEVTVLNYDDPEVRNMAADSCGRVLFFSRRHKLATGVWVAKGEILVK 256
Query: 203 AVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
GV ++ ++ ++ + G HN NA A + + + V +E + + + HR+++
Sbjct: 257 WEGVEGKVTEVASLALPGAHNLENALAATAAAVAQN--VPLEVIGRVLREFKGVAHRLEL 314
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL--GGQAKFGYSGVLIWK----- 314
V +I GV +V+DSK TN EAT L + + C I+L GG+ K +L K
Sbjct: 315 VA-EINGVKYVNDSKGTNPEATIKAL---EAYDCPIVLIAGGRNKGSDFRLLASKMKEKV 370
Query: 315 -TLVNNGLSIPCFAVA-------------NMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
LV G S P A ++ DAV AR A GD ++LSP CAS+D F
Sbjct: 371 KALVLIGESAPLLAAQAKAAGVSDIVLARDLPDAVRRAREKARPGDVVLLSPACASWDMF 430
Query: 361 RNFEHRGMVFQE 372
RN+E RG F++
Sbjct: 431 RNYEERGECFRQ 442
>gi|94501898|ref|ZP_01308408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
RED65]
gi|94425951|gb|EAT10949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
RED65]
Length = 446
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 184/375 (49%), Gaps = 46/375 (12%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V+S++ A+ + I+A+TG+N KSTV T VG+M G++A VGGNLG P
Sbjct: 91 IDAGVPVVSDIQVFAEA--ANAPIIAITGSNAKSTVTTLVGEMAKQCGLKAAVGGNLGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL V V+E+SS+Q+E ++ V+ VLN++PDHL+R+ + +
Sbjct: 149 ---------ALELLNSDIDVYVMELSSFQLE-ATEHLNAKVATVLNISPDHLDRYDSYEG 198
Query: 142 YALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y TK +F+ ++N L + E I F++ GA +D A+
Sbjct: 199 YYQTKYKIFNGCEKAVINLDDNLAQPKTLNCPEQIG---FSIDGKGA--DFVLDRTAQPW 253
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
V ++S QL K+ G HNY N A+AAL+ LG G+D++ + ++ H
Sbjct: 254 QLIVEGDALLSVDQL---KIKGLHNYSN-ALAALA-LGHGFGLDMDGMLKALKSFPGLDH 308
Query: 258 RMQIVHRDIQGVTWVDDSKATNL---EATCTGLMDLKGHKCVILLGGQAKFG-------- 306
R Q + + + V + +DSK TN+ EA GL + V++LGG K
Sbjct: 309 RCQWI-KQVDEVDFYNDSKGTNVGATEAALKGLGPEYAKRIVLMLGGVGKDADFKVLRPV 367
Query: 307 ----YSGVLIW---KTLVNNGLS-IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
S V+++ + ++ LS + + + A A R A + A+V SP CASFD
Sbjct: 368 IDQYVSKVIVYGQDQDIIAKDLSGVDLDRAESFEQAFEMAYRNADHKGAVVFSPACASFD 427
Query: 359 EFRNFEHRGMVFQEL 373
F FE RG F+ +
Sbjct: 428 MFSGFEARGEAFKSM 442
>gi|423282438|ref|ZP_17261323.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 615]
gi|404582006|gb|EKA86701.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 615]
Length = 444
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 189/380 (49%), Gaps = 50/380 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFPGVKIDTEAKT 196
M+NY K + + + + + + + H R +L +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRGLDKHGIRAHL-----YPFSAIKEEGSI 244
Query: 197 ASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEI 251
A E V + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 245 AYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKALSD 301
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV 310
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+ +
Sbjct: 302 FQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTEI 359
Query: 311 ----------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIVLSP 352
L++ L N + L +P V MKDAV A ++A G+ ++LSP
Sbjct: 360 EELVREKCSALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVLLSP 419
Query: 353 GCASFDEFRNFEHRGMVFQE 372
CASFD F+++E RG F++
Sbjct: 420 CCASFDLFKSYEDRGEQFKK 439
>gi|260424625|ref|ZP_05732710.2| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
invisus DSM 15470]
gi|260402591|gb|EEW96138.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
invisus DSM 15470]
Length = 456
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 187/381 (49%), Gaps = 46/381 (12%)
Query: 21 LLQSGKR---VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
++++ KR V+SE++ A +V I LAVTGTNGK+T T +G M+ H I V GN
Sbjct: 89 VMEAFKRRIPVISEIELAYRVTKAPI--LAVTGTNGKTTTTTLLGSMIGHSSIPFAVAGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
LG LS A +A V EVSS+Q+E K FCP +V+LN+TPDH+ERH
Sbjct: 147 LGISLSREA-ELVAEDG------VIAAEVSSFQLEFI-KDFCPKAAVILNITPDHIERHH 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT- 196
TM+ Y K +F +M LL +++ +K + + + + D E
Sbjct: 199 TMERYVAAKARIFENMGKDNCLLLNAEDEYTPILMKKAKNTTVCLFS---ISRDVEEGAC 255
Query: 197 ---ASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
A + G V ++ + +++ G NY N AA L + G+ +EA++ I
Sbjct: 256 LNGADLVIKRRGKVLKVAGIDELQLTGNQNYQNVLAAAF--LAYEGGIPLEAIHDGIIEF 313
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
+ PHR++ V R++ GV++ +DSKATN +A G M+ +++ GG K
Sbjct: 314 KGLPHRIEFV-RELDGVSYYNDSKATNTDAAIKG-METFNRPIILIAGGYDKHTKLDKFM 371
Query: 305 ------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
G + G+ A +M+ AV + +A +GD ++LSP
Sbjct: 372 KTVKARVKCLILLGNAAARFKDEAEKAGIKTIVLA-DDMRGAVEKGKSIACSGDVVLLSP 430
Query: 353 GCASFDEFRNFEHRGMVFQEL 373
C+SFD + N+E RG F+++
Sbjct: 431 ACSSFDMYANYEARGFDFKKI 451
>gi|419801738|ref|ZP_14326952.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parainfluenzae HK262]
gi|419845825|ref|ZP_14369088.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parainfluenzae HK2019]
gi|385193117|gb|EIF40498.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parainfluenzae HK262]
gi|386414863|gb|EIJ29405.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parainfluenzae HK2019]
Length = 437
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 187/400 (46%), Gaps = 58/400 (14%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L +G V+ +++ + + I + +TG+NGKSTV
Sbjct: 63 WLLESDIIVISPGLAVKTPEIQTALSAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 120
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M GI+ +GGN+G P AL + V+E+SS+Q+E
Sbjct: 121 TTLVYEMAKSAGIKVGMGGNIGIP---------ALSLLNEDCDLYVLELSSFQLETTYS- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL---LPFGNQHLNEAIKG 174
+ VLN+T DH++R+ +++Y K ++ + L L FG N+A K
Sbjct: 171 LKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHKAETAVVNLEDKLTFGEGE-NQAKK- 228
Query: 175 HRFNLAWIGAFPGVKIDTEAKTAS---FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ +F + D KT + + + V+ L ++GRHNY N + A
Sbjct: 229 -------VVSFAENQADYWLKTENGKQYLMAKEEVI--LPCDEATLVGRHNYMN--ILAA 277
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L +G+++EA+ +T+ + HR Q+ ++ GV W++DSKATN+ +T L L
Sbjct: 278 TALAQAVGINLEAIRTTLRQFKGLDHRFQLAYQ-ANGVRWINDSKATNVGSTVAALAGLY 336
Query: 292 GHKCV-ILLGGQAKFGYSGVLIWKTLVNNG-LSIPCFA---------------VANMKDA 334
+ +LLGG K L L+N +S CF M+ A
Sbjct: 337 VEGTLHLLLGGDGKGADFSEL--ADLINQPHISTYCFGRDGKQLAALSSQSHLFETMEQA 394
Query: 335 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
++ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 395 ISFLRPRLKSGDMVLLSPACASLDQFSSFEKRGEEFTRLA 434
>gi|167040634|ref|YP_001663619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Thermoanaerobacter sp. X514]
gi|300914675|ref|ZP_07131991.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
sp. X561]
gi|307724091|ref|YP_003903842.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
sp. X513]
gi|226722952|sp|B0K3H2.1|MURD_THEPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|166854874|gb|ABY93283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
sp. X514]
gi|300889610|gb|EFK84756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
sp. X561]
gi|307581152|gb|ADN54551.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
sp. X513]
Length = 454
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 189/377 (50%), Gaps = 54/377 (14%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 ELLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY K
Sbjct: 152 -----MEAAEDDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFG--------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+F + + +L + N+ R +L GA+ K S
Sbjct: 204 GRIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLENGAY--------IKDGS 255
Query: 199 FEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ G + + + + + G HN N A+AA SV L G+ + + +T++ + H
Sbjct: 256 IYISVNGNAEKIIDIEEIYIPGEHNLEN-ALAASSVAYLS-GISADVIANTLKTFKGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------FGYSG 309
R++ V +I GV + +DSK TN +A+ + LK V++ GG K ++G
Sbjct: 314 RIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDKGSEFDEFVKAFNG 371
Query: 310 -----VLIWKTL-----VNNGLSIP----CFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
+LI +T S P FA +++AV A A GD+++LSP CA
Sbjct: 372 KVKKLILIGQTAKKIRDTARKYSYPEDDILFA-GTLEEAVKKAYESAKEGDSVLLSPACA 430
Query: 356 SFDEFRNFEHRGMVFQE 372
S+D FRNFE RG +F++
Sbjct: 431 SWDMFRNFEERGRIFKK 447
>gi|332878268|ref|ZP_08445994.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 329 str. F0087]
gi|332683719|gb|EGJ56590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 329 str. F0087]
Length = 444
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 188/371 (50%), Gaps = 48/371 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++SE++FA+Q +I +A+TG+NGK+T + G+E +GGN+G +E
Sbjct: 89 IISEIEFASQYTHSTI--VAITGSNGKTTTTLLTHHIFKQAGLEVGLGGNIGYSFAELVA 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
H S+ P + V+E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +NY +K
Sbjct: 147 H-----SNPPYY---VLEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFENYIASK 197
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF------E 200
+ + + + +N+ + H IG I+ E +F
Sbjct: 198 FRIAMNQTANDYFIYDADDPVINDWLTTHPLKPKCIG----FSIEKELSEGAFLKDNKIH 253
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+ + + + + + G+HN N AA++ ++I +L +++ + HR++
Sbjct: 254 IMLENQTTVIDVEEISLKGKHNIKNTMAAAVAARLVNI--RNASLRESLKGFQGAAHRLE 311
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGVLIWKTLVNN 319
V + ++GVT+++DSKATN+ + L +K V ++GGQ K Y+ +L + +
Sbjct: 312 EV-KVVEGVTYINDSKATNVNSVYFALDTIKT-PIVWIVGGQDKGNDYNSLLPY--VHQK 367
Query: 320 GLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFDEF 360
+I C V N M++AV A+R AT GD ++LSP CASFD F
Sbjct: 368 VKAIVCLGVDNTPILQSFYNVIDNMVETRSMEEAVKMAQRFATAGDTVLLSPACASFDLF 427
Query: 361 RNFEHRGMVFQ 371
+++E RG F+
Sbjct: 428 KSYEDRGDQFK 438
>gi|357031775|ref|ZP_09093718.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter
morbifer G707]
gi|356415005|gb|EHH68649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter
morbifer G707]
Length = 448
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 170/355 (47%), Gaps = 64/355 (18%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+ ++VTGTNGKST + +L+ G+ GGNLG +ALP P V V
Sbjct: 113 RFVSVTGTNGKSTTTALIAHLLDVAGLACAAGGNLGTA-------SLALPL-LPDQGVYV 164
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSY +E ++Y + + +LNLTPDHL+RH M+ YA K H+F +M L ++
Sbjct: 165 LEMSSYMLERLDRYHA-SAACLLNLTPDHLDRHGDMEGYAAAKAHVFDNMTGDDLAVIGQ 223
Query: 164 GN---QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-ASFEVPAVGVVSQLQLHNMKVMG 219
+ + + E++ +A + EA + ++ PA+ G
Sbjct: 224 DDVWCRRIAESVAARGIPVASL----------EADSLPPYDAPAL-------------PG 260
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
RHN N A A V L I D+ + + ++ HR+Q V + +G+++V+DSKATN
Sbjct: 261 RHNVQNIAAAWKIVRHLGISDDM--VRAGLKTFGGLEHRLQKVAK-CEGISFVNDSKATN 317
Query: 280 LEATCTGLMDLKGHKCVILLGGQAK-------------------FGYSGVLIWKTLVNNG 320
EA L + + + GG AK G L+ +TL +
Sbjct: 318 AEAASKALEAYD--RVMWIAGGMAKAGGIESLAPWFGHVAHAFLIGRDASLLARTLEAH- 374
Query: 321 LSIPCFAVANMKDAVNHARRMA--TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
++P ++ AV A + A T D ++LSP CASFD+FR+FE RG F ++
Sbjct: 375 -NVPFTLCDTLEKAVPAAFKAAEQTQTDTVLLSPACASFDQFRSFEDRGSHFLQI 428
>gi|345883073|ref|ZP_08834522.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella sp.
C561]
gi|345044111|gb|EGW48158.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella sp.
C561]
Length = 443
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 186/378 (49%), Gaps = 49/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + + K++ +TG+NGK+T + + + G +A + GN+GN
Sbjct: 82 LMAQGTHIISEIEFAGRYT--NSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + TK + N + +F++ + +P ++ +
Sbjct: 190 FENYADAKMRIIQNQ--TKEDSFIYWNDDPVIKKELEKFDVHAV-CYPFSELKEKGSIGY 246
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILR 253
E + ++ ++ + G+HN +N+ A ++ DI G+ E + ++
Sbjct: 247 IEEGQYTIEQPEPFNMEQEDLSLTGKHNIYNSLAAGIAS---DISGIKKENIRKSLSDFP 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW 313
HR++ V + + GV +++DSKATN++A C ++ V++LGG+ K VL
Sbjct: 304 GVEHRLEKVCK-VAGVQYINDSKATNVDA-CWYALESMNTPTVLILGGKDKGNDYSVL-- 359
Query: 314 KTLVN--------------------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
K LV + L IP +MKD V +A G+ ++LSP
Sbjct: 360 KDLVKQKCIGLVYLGADNKKLHDNFDSLGIPVRDTHSMKDCVTACAELAKPGNTVLLSPC 419
Query: 354 CASFDEFRNFEHRGMVFQ 371
CASFD F+N E RG F+
Sbjct: 420 CASFDLFKNMEDRGEQFK 437
>gi|387773943|ref|ZP_10129225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parahaemolyticus HK385]
gi|386903435|gb|EIJ68250.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Haemophilus
parahaemolyticus HK385]
Length = 433
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 173/388 (44%), Gaps = 59/388 (15%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
F L + + +G V+ +++ + + + I+A+TG+NGKSTV T V +M GI
Sbjct: 76 FALATPEIQQAINAGVEVVGDIELFCREV--TAPIIAITGSNGKSTVTTLVTEMAKQAGI 133
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+ +GGN+G P AL + + V+E+SS+Q+E + + VLN++
Sbjct: 134 KVGMGGNIGVP---------ALSLLNSDYALYVLELSSFQLETTSS-LKAVAATVLNVSE 183
Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTKL-GLLP--FGNQHLNEAIKGHRFNLAWIGAFPG 187
DH++R+ ++ +Y K ++++ N + G P + Q + I+ N +
Sbjct: 184 DHMDRYDSLADYRAAKLKIYNNAENVIVNGEDPQTYPEQAVKNLIRFAEHNAEY------ 237
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
T V G + + M + GRHN NA A G+ E +
Sbjct: 238 --------TLRHGVLYAGETAVMGTKQMLIHGRHNEMNALAAMALAD--AAGIPREGIVK 287
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAK-- 304
++I HR Q V + GV WV+DSKATN+ +T L L+ +LLGG K
Sbjct: 288 ALQIYGGLAHRFQAVPTN-DGVRWVNDSKATNVGSTVAALNGLEVAGTLYLLLGGDGKAA 346
Query: 305 ------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 346
FG G + K LS V M +AV R GD
Sbjct: 347 DFSELKPLINKPNIVCYCFGQDGAALAK------LSSQSVLVETMYEAVEKIRPQLKQGD 400
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQELA 374
++LSP CAS D+F+NFE RG +F LA
Sbjct: 401 MVLLSPACASLDQFKNFEQRGDIFMALA 428
>gi|395492283|ref|ZP_10423862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
PAMC 26617]
Length = 355
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 167/371 (45%), Gaps = 64/371 (17%)
Query: 28 VMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++ +++ AQ +PR K++ +TGTNGKST V +L I + +GGN+G P+ E
Sbjct: 19 ILGDIELFAQARSDLPRH-KVVGITGTNGKSTTTALVHHILQTAKIPSLMGGNIGLPILE 77
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
P+ V V+E+SSYQ+++ C V+V+LN+TPDHL+R+ YA
Sbjct: 78 Q--------QPLPEGGVYVLELSSYQIDLTQSLDC-DVAVLLNVTPDHLDRYDGFDAYAA 128
Query: 145 TKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
+K LF ++ G+ + ++ L I PGV +D
Sbjct: 129 SKARLFEMQSPGHAAIIGIGDTPSALIARSLSARGEQLTKIA--PGVCMD---------- 176
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
Q + G HN NA A L GV A++ + PHRM+
Sbjct: 177 ---------QSRWPSLQGPHNAQNALAAIAVAQAL--GVSEAAIDEGLRSFTGLPHRMER 225
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V R GV WV+DSKATN E+T L + +LGG+AK
Sbjct: 226 V-RTHNGVAWVNDSKATNPESTAPALAAFD--RIHWILGGEAKSDDLDACAPQFGHIASA 282
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
G +G L +P ++ AV A R A GD ++LSP CASFD+FR+
Sbjct: 283 YTIGAAGPRFAAILAGK---VPVEQCGDLATAVAAAARSAAPGDTVLLSPACASFDQFRD 339
Query: 363 FEHRGMVFQEL 373
FE RG F+ L
Sbjct: 340 FEDRGNQFRTL 350
>gi|15616836|ref|NP_240048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
gi|11133470|sp|P57313.1|MURD_BUCAI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|25293622|pir||F84955 UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9)
[imported] - Buchnera sp. (strain APS)
gi|10038899|dbj|BAB12934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
Length = 440
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 195/379 (51%), Gaps = 63/379 (16%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++S+++ ++ + + I+++TGTNGKSTV T + ++ G +AF+GGN+G P+ E
Sbjct: 90 GIEIISDIELFSREV--TCPIISITGTNGKSTVATMIEKIAKKSGYKAFLGGNIGVPVLE 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKT-MKNY 142
+ + ++E+SS+Q+E N + ++V+LN++ DH+ R+ + Y
Sbjct: 148 IL---------DKEADLYIIELSSFQLE--NTFNLKSKIAVILNISEDHINRYPNGFQQY 196
Query: 143 ALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
TK +++ ++N+ N + +++ H N WI +F + D + S
Sbjct: 197 KNTKLSVYNQAEICIINS--------NDKIEKSLI-HSKNKKWI-SFGTNRSDYRICSKS 246
Query: 199 FEVPAVGVVSQLQLHNMKVM--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT-- 254
+ P + ++ L+ +++ G HNY+N V+ L + + N I +L++
Sbjct: 247 ND-PILFFKNKKILNTSEILLYGYHNYNNILVS----LAISDAMQFPR-NDAINVLKSFS 300
Query: 255 -PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVL- 311
PHR QI+ + +GV W++DSK+TN+ +T L +K + +LLGG +K +L
Sbjct: 301 NLPHRFQIIKNE-KGVRWINDSKSTNVNSTQVALNSIKTTGTIRLLLGGDSKSANFNILK 359
Query: 312 -IWKTLVNNGLSIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGC 354
I++TL + I CF V N+K AV + +GD ++LSPGC
Sbjct: 360 NIFRTL---KIKIYCFGRDGIKLSKICEKKSIYVENLKKAVILISKQVKSGDTVLLSPGC 416
Query: 355 ASFDEFRNFEHRGMVFQEL 373
+S +F NFE RG +F +L
Sbjct: 417 SSLGQFSNFEERGNLFIKL 435
>gi|18311441|ref|NP_563375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
perfringens str. 13]
gi|30316081|sp|Q8XHM4.1|MURD_CLOPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|18146125|dbj|BAB82165.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
perfringens str. 13]
Length = 458
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 174/360 (48%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 RVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + N+ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDNIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGVTKEKIKAAFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ VN A+ +A +GD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVNIAKSIAESGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>gi|253681289|ref|ZP_04862087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
botulinum D str. 1873]
gi|253562527|gb|EES91978.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
botulinum D str. 1873]
Length = 458
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 180/380 (47%), Gaps = 53/380 (13%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+SG + SE++ + P K+ +TG++GK+T T V ML G + +VGGN+GNPL
Sbjct: 99 ESGSYITSEMEEFIKYCP--AKVFGITGSDGKTTTTTLVYNMLKSQGYKTWVGGNIGNPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
F I + + K V+E+SS+Q M I C ++V NL+P+HL+ HK M+
Sbjct: 157 ----FANIERMTKEDK---VVLELSSFQLMTINEDINC---ALVTNLSPNHLDVHKDMEE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-ASFE 200
Y K ++F + L +L N+ N+ + + G I E A F+
Sbjct: 207 YVNAKKNIFKYQNENDLLVLNRDNKITNDLVNEAK------GRVKQFSIKEEINNGAYFK 260
Query: 201 VPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ ++ + L +K+ G HN N +AA ++ D+ VD+ + HR
Sbjct: 261 NNKLFILDKEVCALEEVKLKGMHNVENL-LAAFCLVHEDVNVDI--MRKVATTFTGVEHR 317
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------AKFGY- 307
+ V R++ GV + +DS A++ T GL K VIL+ G A+ GY
Sbjct: 318 CEFV-RELDGVKYYNDSIASSPTRTIAGLRAF--EKPVILIAGGYDKHIPFEPLAEEGYD 374
Query: 308 -------SGVLIWK-------TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
+GV K + N IP + + ++A+ A+ ++ GD + LSP
Sbjct: 375 KIKALILTGVTKEKIKKAFDDVIKNKQYKIPIYMLEGFEEAIYKAKEISKMGDIVTLSPA 434
Query: 354 CASFDEFRNFEHRGMVFQEL 373
CASFD F NFE RG F+E+
Sbjct: 435 CASFDMFANFEIRGNKFKEI 454
>gi|148240320|ref|YP_001225707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. WH 7803]
gi|147848859|emb|CAK24410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
WH 7803]
Length = 463
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 178/389 (45%), Gaps = 51/389 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G RV E+ A + I + +TGTNGK+TV + +L H G+EA + GN
Sbjct: 86 LNALRAQGLRVRGEMSVAWDAL-SGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ +E A L ++PK V+E+SSYQ+E + P + + LTPDHLERH
Sbjct: 145 VGHSAAELALEV--LQGTRPKPDWVVMEMSSYQIEAAGE-VSPRIGIWTTLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-----RFNLAWI-GAFPGVKID 191
T+ Y K L L + I+ H R L W+ GA G D
Sbjct: 202 TLAAYRAIKRGLLERAETPVL-------NADDADIRQHCGAWSRPGLRWVSGADDGPDKD 254
Query: 192 TEAKTASFEVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
+ + V A G VSQ + + G HN N + + L+ V ++
Sbjct: 255 SIHR---ISVNAQGWVSQGERPLFPADALPLPGDHNRQN--MLLATAAALEASVSASSIE 309
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
+ + PHR++ + + G+ +DSKATN +A GL ++ V+L GGQ K G
Sbjct: 310 AALRCFTGVPHRLEPLG-SVGGIPVFNDSKATNYDAAAVGLRSVQA-PVVLLAGGQTKQG 367
Query: 307 YS------------GVLIWKT--------LVNNGLSIPCFAVANMKDAVNHARRMATNGD 346
+ GV+++ + G S P A++ AV A +A + +
Sbjct: 368 DADPWLELLQSQVCGVVLFGAGAGELADLIETAGFSGPVMHHADLNAAVPQALSLAKDFE 427
Query: 347 A--IVLSPGCASFDEFRNFEHRGMVFQEL 373
A ++LSP CASFD++ NFE RG F+ L
Sbjct: 428 AGSVLLSPACASFDQYPNFEARGDHFRRL 456
>gi|147678198|ref|YP_001212413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pelotomaculum
thermopropionicum SI]
gi|189082913|sp|A5D147.1|MURD_PELTS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|146274295|dbj|BAF60044.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pelotomaculum
thermopropionicum SI]
Length = 455
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 183/383 (47%), Gaps = 50/383 (13%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G V EL+ A RS I+AVTGTNGK+T T +G++ G+ VGGN+G+P
Sbjct: 91 VREGIPVTGELELA-YYFTRS-PIVAVTGTNGKTTTTTLIGEIFKDAGMNTLVGGNIGSP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L IA V V EVSS+Q+E + F P V VVLN+TPDHL+RH TM N
Sbjct: 149 L-------IAEVERYGPDDVIVAEVSSFQLETAST-FRPKVGVVLNITPDHLDRHGTMGN 200
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA TK +F++ +L + G R + + E K + V
Sbjct: 201 YAATKARMFANQGPGDFAVLNCDDPLAASLKAGVRSRVIFFSR------RKELKEGVW-V 253
Query: 202 PAVGVVSQLQLH--------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
+V+ L H + + G HN NA A + + G++ +L T+ +
Sbjct: 254 SGGMIVASLNGHREVVCRSDELGLPGAHNLENALAAVAAAKAM--GIESNSLAGTLRRFK 311
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
HR++ V ++ GV +++DSK TN +A L + G V++ GG+ K
Sbjct: 312 GVAHRLEFVA-EVDGVRYINDSKGTNPDAAIKAL-ESYGEPIVLIAGGKNKGSDFREFAR 369
Query: 305 -----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
G S LI + G +A ++AV ARR+A GD ++LSP
Sbjct: 370 KVKEKAKVLVVLGQSAGLIAEAARAEGFENILYA-DGFREAVLLARRVARPGDIVLLSPA 428
Query: 354 CASFDEFRNFEHRGMVFQELAFS 376
CAS+D F++FE RG +F+E+ S
Sbjct: 429 CASWDMFKSFEERGDLFKEIVLS 451
>gi|424866318|ref|ZP_18290159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum sp.
Group II 'C75']
gi|124515890|gb|EAY57399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
rubarum]
gi|387223115|gb|EIJ77487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum sp.
Group II 'C75']
Length = 487
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 188/384 (48%), Gaps = 44/384 (11%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+ VM E+++A+ ++ ++AV GTNGKST + L G F+GGN G PLS+
Sbjct: 100 RNVMGEMEWASSWT--AVPLVAVGGTNGKSTTSALLAHFLEAAGERVFLGGNFGTPLSDM 157
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
S P VAVVE+SS+Q E F P V+++LN+TPDHL+R+ ++ +Y
Sbjct: 158 VLS--ERRGSSPLPTVAVVELSSFQAET-MGIFRPVVNLLLNITPDHLDRYLSVDHYRNA 214
Query: 146 KCHLFSHMVNTKLGLL---PFGNQHLNEAIKGHRFNLAWI----GAFP----GVKIDTEA 194
K + F M +L P + + R LAW G P G+ ++ +A
Sbjct: 215 KWNAFQTMEKESFTVLNRDPACGVYPPFSPISSR--LAWFYGSKGPCPDRTGGLILERDA 272
Query: 195 KTASFE-VPAVGVVS-QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE-- 250
+A+ + + + +S L+ ++ MG AA+ + G E + + +E
Sbjct: 273 LSATLDGIEGLPPISWNLEKFPLEGMGNRQNLAAALLGAVLYLKATGKHPEQVTTVLEEA 332
Query: 251 --ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI--LLGGQAKFG 306
R PHRM++V + +G+ +++DSKATN++AT L GH + +LGG+ K
Sbjct: 333 AASFRGLPHRMEVVG-EWKGIRFINDSKATNVDATRLALEGYAGHSPFVHLILGGRDKGA 391
Query: 307 YSGVLIW--KTLVNN---------------GLSIPCFAVANMKDAVNHARRMATNGDAIV 349
L +T V + G +P ++++AV+ A A+ GD ++
Sbjct: 392 PYAPLREGIRTSVKSIAVLGEARDKIREELGSLVPLRMCESLEEAVDVAAGQASEGDRVL 451
Query: 350 LSPGCASFDEFRNFEHRGMVFQEL 373
LSP C+S+D F +E RG VF+ +
Sbjct: 452 LSPACSSYDMFHGYEERGAVFRSI 475
>gi|397904564|ref|ZP_10505469.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caloramator
australicus RC3]
gi|397162390|emb|CCJ32803.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caloramator
australicus RC3]
Length = 453
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 166/363 (45%), Gaps = 55/363 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI +TG++GK+T T + +ML G F+GGN+G PL E + V
Sbjct: 113 KIFGITGSDGKTTTTTLIYEMLKKQGYNVFLGGNIGIPLFEKIEEI-------KEDDYVV 165
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + P VSV+ NL+P+HL+ HK M+ Y +K ++F H + +L
Sbjct: 166 LELSSFQLMDFD--VSPIVSVITNLSPNHLDYHKDMEEYVNSKKNIFLHQNERGITILNK 223
Query: 164 GNQ---HLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH--NMKV 217
N+ + + +KG RF AF + ++ + V + H +++
Sbjct: 224 DNEITYSMRDEVKGEIRFFSMKEKAF-----------SYYDNGKLYVNDEFICHKDEVRL 272
Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
+G HN N A +V G V +E + HR++ V R+I GV + +DS A
Sbjct: 273 LGMHNIENLLTAFAAVYGF---VSIENMRYVAMNFGGVAHRIEFV-REINGVKFYNDSIA 328
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAK------FGYSGVLIWKTLV-------------- 317
++ T GL K +++ GG K G+ KTL+
Sbjct: 329 SSPTRTLAGLNSF-DRKVILIAGGYDKNVPFEPLAEKGIDKIKTLILLGMTKDKIKSAFL 387
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G + ++++AV A +A GD + LSP CASFD F+NFE RG F+E+
Sbjct: 388 DVMNKTGKRVDIIETNSLEEAVEKAYEVAEYGDIVTLSPACASFDMFKNFEERGNRFKEI 447
Query: 374 AFS 376
+
Sbjct: 448 VLN 450
>gi|397662261|ref|YP_006502961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
equigenitalis ATCC 35865]
gi|394350440|gb|AFN36354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
equigenitalis ATCC 35865]
Length = 478
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 181/389 (46%), Gaps = 56/389 (14%)
Query: 27 RVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+++SE+D + + + IKI+ +TGTNGK+TV + V M + G+++ GN +S
Sbjct: 102 KIISEIDLFYEAVKSNSKQIKIIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGN----IS 157
Query: 84 EAAFHCIALPSSKPKF-QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+A + K + V +E+SS Q+ Y C S +LN+T DH++ H +M+ Y
Sbjct: 158 PSALTVVCEFEEKNSWPDVISLELSSAQL-FYTDYICLDASTILNITQDHIDWHGSMEAY 216
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS-FEV 201
+K +FSH + F L+ A L + + P K D K + +
Sbjct: 217 IASKKKIFSHSKIAVVDENQFKEFGLSNA-------LVYRDSLPINKEDIGIKEVNGMKW 269
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + MK+ G HN NA A +D+ E L + + HR
Sbjct: 270 FCTTDKNLMPVEAMKIRGNHNVLNAMAAMQLCRAIDLP--FEPLLTALRDYEAHNHRCTY 327
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVN--- 318
V RDIQGV ++DDSK TN+ AT + D V++LGG+ K G ++++L N
Sbjct: 328 V-RDIQGVNFIDDSKGTNVGATVAAI-DGMYRNLVVILGGEGK-GQDFTPLYESLRNRTK 384
Query: 319 -NGL--------------------------SIPCFAVANMKDAVNHARRMATNGDAIVLS 351
NGL +IP V + +AV + ++A +GD ++LS
Sbjct: 385 SNGLKGIVLIGKDKNILSHYLHIKDFKFEETIPVVVVNTIDEAVVESFKLAQSGDLVLLS 444
Query: 352 PGCASFDEFRNFEHRGMVF----QELAFS 376
P CAS D F+N+ RG+ F ELA S
Sbjct: 445 PACASIDMFKNYHERGVKFVEAINELALS 473
>gi|345429823|ref|YP_004822941.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
parainfluenzae T3T1]
gi|301155884|emb|CBW15353.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
parainfluenzae T3T1]
Length = 437
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 187/400 (46%), Gaps = 58/400 (14%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L +G V+ +++ + + I + +TG+NGKSTV
Sbjct: 63 WLLESDIIVISPGLAVKTPEIQTALSAGVEVIGDIELFCRAATKPI--IGITGSNGKSTV 120
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M GI+ +GGN+G P AL + V+E+SS+Q+E
Sbjct: 121 TTLVYEMAKAAGIKVGMGGNIGIP---------ALSLLNEDCDLYVLELSSFQLETTYS- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL---LPFGNQHLNEAIKG 174
+ VLN+T DH++R+ +++Y K ++ + + L L FG N+A K
Sbjct: 171 LKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHNAETAVVNLEDKLTFGEGE-NQAKK- 228
Query: 175 HRFNLAWIGAFPGVKIDTEAKTAS---FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ +F + D KT + + + V+ L ++GRHNY N + A
Sbjct: 229 -------VVSFAENQADYWLKTENGKQYLMAKEEVI--LPCDEATLVGRHNYMN--ILAA 277
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L +G+++EA+ + + + HR Q+ H+ GV W++DSKATN+ +T L L
Sbjct: 278 TALAQAVGINLEAIRTALRQFKGLDHRFQLAHQ-ANGVRWINDSKATNVGSTVAALAGLY 336
Query: 292 GHKCV-ILLGGQAKFGYSGVLIWKTLVNNG-LSIPCFA---------------VANMKDA 334
+ +LLGG K L L+N +S CF M+ A
Sbjct: 337 VEGTLHLLLGGDGKGADFSEL--ADLINQPHISTYCFGRDGKQLAALSSQSHLFETMEQA 394
Query: 335 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
++ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 395 ISFLRPHLKSGDMVLLSPACASLDQFASFEKRGEEFTRLA 434
>gi|152979588|ref|YP_001345217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus succinogenes 130Z]
gi|150841311|gb|ABR75282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
succinogenes 130Z]
Length = 437
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 181/390 (46%), Gaps = 59/390 (15%)
Query: 13 LKATGLACLLQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
+K + L +G V+ +++ F + ++ ++A+TG+NGKSTV T V +M G+
Sbjct: 77 VKTPEIQTALSAGIEVVGDIELFCREANIQAKPVVAITGSNGKSTVTTLVAEMAKADGLR 136
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
A +GGN+G P AL ++ + V+E+SS+Q+E + VLN+T D
Sbjct: 137 AGMGGNIGIP---------ALSLLDAEYDLYVLELSSFQLETTFG-LRARAATVLNVTED 186
Query: 132 HLERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIK-GHRFNLAWIGAFP 186
H+ R+ +++Y K ++++ ++N + L Q G W+
Sbjct: 187 HMNRYADLEDYRQAKLKIYANAETAVINAEDSLTQDNKQRAKRQFSFGESHADYWLKTEN 246
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
G + + + VV L +K+ GRHNY N A+A+++ L +GV +
Sbjct: 247 GKQ---------YLMAGREVV--LPCDEVKISGRHNYMN-ALASIA-LAQAVGVKTHGIR 293
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHKCVILLGGQAK 304
+ + HR Q+ H GV W++DSKATN+ +T L + L+G+ +LLGG K
Sbjct: 294 TALRTFTGLDHRFQLAHL-ANGVRWINDSKATNVGSTVAALTGLYLEGN-LHLLLGGDGK 351
Query: 305 --------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN 344
FG G + K LS M+ AVN R +
Sbjct: 352 GADFSELEKLVNKPEIFCYCFGQDGAALAK------LSARSQLFETMEQAVNALRPALKS 405
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
GD ++LSP CAS D+F +FE RG F LA
Sbjct: 406 GDMVLLSPACASLDQFASFEKRGDEFTRLA 435
>gi|114330275|ref|YP_746497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrosomonas
eutropha C91]
gi|122314675|sp|Q0AJD9.1|MURD_NITEC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|114307289|gb|ABI58532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
eutropha C91]
Length = 470
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 178/373 (47%), Gaps = 33/373 (8%)
Query: 22 LQSGKRVMSELDFAA----QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LQ G V+ +++ A Q P KILA+TG+NGK+TV T VG+M + G + V GN
Sbjct: 88 LQQGVSVIGDIELFAIALDQHAPPGTKILAITGSNGKTTVATMVGEMARNTGWDVEVAGN 147
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +A I + + V+E+SS+Q+E + P +VVLNL+ DHL+R++
Sbjct: 148 IGLAALDALMQRI---DTGKWPHLWVLELSSFQLETTSS-LRPNAAVVLNLSEDHLDRYR 203
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
++ YA K +F N+ + +L + + + L + + P + +
Sbjct: 204 IIEEYAAAKARIFPDPHNSCVQVLNREDARVYAMAHENSKQLTFGLSAPAFDDEFGVLPS 263
Query: 198 SFEV-PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
++ A G +++ + V G HN NA A +D+ E L + I + P
Sbjct: 264 GSDLWLAQGTTRLMKVSELAVAGLHNAANALAALALCRAIDL--PFEPLLHALHIFKGLP 321
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS-------- 308
HRMQ + + GVT+ DDSK+TN+ + L + K VIL+ G G
Sbjct: 322 HRMQKI-AEFNGVTFYDDSKSTNVGSAVAALNGFR--KNVILIAGGDGKGQDFSPLEQPV 378
Query: 309 -----GVLIWKTLVN------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
GV++ G ++P VA M +AV + +A GD+++LSP CAS
Sbjct: 379 SKHTRGVVLLGRDAEKISQAIQGCNVPVHRVATMDEAVRVSFLLAERGDSVLLSPACASL 438
Query: 358 DEFRNFEHRGMVF 370
D F N+ HR VF
Sbjct: 439 DMFNNYIHRAEVF 451
>gi|298372208|ref|ZP_06982198.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
oral taxon 274 str. F0058]
gi|298275112|gb|EFI16663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
oral taxon 274 str. F0058]
Length = 468
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 181/395 (45%), Gaps = 61/395 (15%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L + G V+SE++FA + + K + +TG+NGK+T +L + G + GN
Sbjct: 90 IKSLREKGIPVISEIEFAGRYT--NAKTICITGSNGKTTTTMLTYHILRNAGYNVGLAGN 147
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH 136
+G A+ ++ F ++E+SS+Q++ Y F ++++ N+TPDHL+R+
Sbjct: 148 VGKSF--------AMQVAEDNFDYYILEISSFQLD--GMYSFRADIAIITNITPDHLDRY 197
Query: 137 K-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
+NY +K + + + G+ + I+ ++ KI +
Sbjct: 198 DYKFQNYVDSKFRILQNQTENDFFIFWAGDSTVANEIEKRGTSI------KARKIPFDLT 251
Query: 196 TASFEVPAVGVVS---------------QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
+ + VP V +++ +N+ + G HN +N+ A L+ GV
Sbjct: 252 SQTDNVPNYAFVDGKDIIFNNLTNKLFLEMETNNLPLKGNHNLYNSMAAGLA--SQVAGV 309
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
+A+ ++E HRM+ V ++GV +++DSKATN+ + L + +IL G
Sbjct: 310 SKDAIRRSLETFEGVEHRMEYVAT-VRGVRYINDSKATNVNSCWYALQSMTTPVVLILGG 368
Query: 301 GQAKFGYSGV----------LIWKTLVNN-------------GLSIPCFAVANMKDAVNH 337
YS + LI+ + N+ G IP +M++ V
Sbjct: 369 TDKGNDYSDISELVSDRVHHLIFLGVDNDKLIKFFGCHRNKEGKKIPYSEARSMEECVQQ 428
Query: 338 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
A ++A NGD ++LSP CASFD F N+E RG F+E
Sbjct: 429 AYKVAKNGDTVLLSPCCASFDLFNNYEDRGRQFKE 463
>gi|374602399|ref|ZP_09675392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
dendritiformis C454]
gi|374392001|gb|EHQ63330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
dendritiformis C454]
Length = 475
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 182/394 (46%), Gaps = 61/394 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + P I+ +TG+NGK+T T+VG ML G+ V GN+G P
Sbjct: 93 LALGIEVVTEVEVAYHLSP--APIIGITGSNGKTTTTTWVGNMLEAAGLRPIVAGNIGTP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L +AA A V V E+SS+Q++ ++ F P V+ +LNL+ HL+ H TM++
Sbjct: 151 LCQAAGEAAA-------DNVLVAELSSFQLKGTSE-FRPRVASLLNLSETHLDYHGTMED 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----GVKIDTEAKTA 197
Y +K LF +M N + +L + + W+ + GV ++ A
Sbjct: 203 YVQSKARLFRNMANGDIAVLNADDAACRALAPDIGARIWWVSSTRRVECGVYVEPPYPEA 262
Query: 198 SFEVPA-----VGVVSQLQLH------NMKVMGRHNYHNA-AVAALSVLGLDIGVDVEAL 245
S E V QLH + V GR+N NA A A+S+ G AL
Sbjct: 263 SREGEDEDRQLVYADEAGQLHPIIGVREIGVSGRYNVDNALAAVAISIAA---GAKPGAL 319
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC-VILLGGQAK 304
+ R HR++ V ++ G ++ ++SKATN +AT LM L+ + V+L+ G
Sbjct: 320 AEPLRSFRGVEHRLEYVG-EVNGTSYYNNSKATNTKAT---LMALEAFEAPVVLIAGGLD 375
Query: 305 FGYSGVLIWKTLVNNGLSIPCFA-----------------------VANMKDAVNHARRM 341
G + + L ++ V N DAV+ A R+
Sbjct: 376 RGLDFLELVPVLKERAAAVVTMGETREILAAIAAKAGLTKVAVVDNVDNASDAVSEAVRL 435
Query: 342 ATN----GDAIVLSPGCASFDEFRNFEHRGMVFQ 371
A GD ++LSP CAS+D F ++E RG +F+
Sbjct: 436 AAGYAKPGDVVLLSPACASWDMFPSYEERGRMFK 469
>gi|319778486|ref|YP_004129399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
equigenitalis MCE9]
gi|317108510|gb|ADU91256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
equigenitalis MCE9]
Length = 478
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 181/389 (46%), Gaps = 56/389 (14%)
Query: 27 RVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+++SE+D + + + IKI+ +TGTNGK+TV + V M + G+++ GN +S
Sbjct: 102 KIISEIDLFYEAVKSNSKQIKIIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGN----IS 157
Query: 84 EAAFHCIALPSSKPKF-QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+A + K + V +E+SS Q+ Y C S +LN+T DH++ H +M+ Y
Sbjct: 158 PSALTVVCEFEEKNSWPDVISLELSSAQL-FYTDYICLDASTILNITQDHIDWHGSMEAY 216
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS-FEV 201
+K +FSH + F L+ A L + + P K D K + +
Sbjct: 217 IASKKKIFSHSKIAVVDENQFKEFGLSNA-------LVYRDSLPINKEDIGIKEVNGMKW 269
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + MK+ G HN NA A +D+ E L + + HR
Sbjct: 270 FCTTDKNLMPVEAMKIRGNHNVLNAMAAMQLCRAIDLP--FEPLLTALRDYEAHNHRCTY 327
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVN--- 318
V RDIQGV ++DDSK TN+ AT + D V++LGG+ K G ++++L N
Sbjct: 328 V-RDIQGVNFIDDSKGTNVGATVAAI-DGMYRNLVVILGGEGK-GQDFTPLYESLRNRTK 384
Query: 319 -NGL--------------------------SIPCFAVANMKDAVNHARRMATNGDAIVLS 351
NGL +IP V + +AV + ++A +GD ++LS
Sbjct: 385 SNGLKGIVLIGKDKNILSHYLNIKDFKFEETIPVVVVNTIDEAVVESFKLAQSGDLVLLS 444
Query: 352 PGCASFDEFRNFEHRGMVF----QELAFS 376
P CAS D F+N+ RG+ F ELA S
Sbjct: 445 PACASIDMFKNYHERGVKFVEAINELALS 473
>gi|393782275|ref|ZP_10370460.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
salyersiae CL02T12C01]
gi|392673546|gb|EIY67005.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
salyersiae CL02T12C01]
Length = 444
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 187/379 (49%), Gaps = 48/379 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKEQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDKHDYYIIELSSFQLD--NMYDFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L + +K H + A + GV E
Sbjct: 190 MQNYIDAKFRITRNQTQDDAFIFWNDDPIIKRELEKHGLKAHLYPFAAVKE-DGVIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G+HN +N+ A +S L G+ + + +
Sbjct: 249 DHEVKINEP---IAFNMEQEKLALTGQHNLYNSLAAGISANLA---GITKDDIRKALSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV- 310
+ HR++ V R + G+ +++DSKATN+ + L + K V++LGG+ K Y+ +
Sbjct: 303 KGVEHRLEKVAR-VGGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTEIE 360
Query: 311 ---------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIVLSPG 353
L++ L N + L +P V MKDAV A ++A G+ ++LSP
Sbjct: 361 DLVREKCSALVYLGLHNEKLHAFFDRLGLPVADVQTGMKDAVEAAYKLAKKGETVLLSPC 420
Query: 354 CASFDEFRNFEHRGMVFQE 372
CASFD F+++E RG F+E
Sbjct: 421 CASFDLFKSYEDRGDQFKE 439
>gi|303250495|ref|ZP_07336692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307251537|ref|ZP_07533444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307256037|ref|ZP_07537825.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|302650483|gb|EFL80642.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306861001|gb|EFM93007.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306865459|gb|EFM97354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 436
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 164/353 (46%), Gaps = 52/353 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG NGKSTV T V +M GI+ +GGN+G P+ L ++++ V+
Sbjct: 108 IIAITGANGKSTVTTLVTEMAKQAGIKVGMGGNIGVPV---------LSLLNDEYELFVL 158
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN++ DH++R+ +++ Y L K ++ + +VN +
Sbjct: 159 ELSSFQLETTSS-LNAVAATILNISEDHMDRYNNSLEEYRLAKLRIYDNAENVIVNGEDR 217
Query: 160 L-LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
L P Q + + I+ +N + T + G + + M +
Sbjct: 218 LTYPLETQAVKKLIRFAEYNAEY--------------TMRNGILYSGDDAIIPTKEMLIS 263
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
GRHN NA A G+ E + +++ HR Q V + GV WV+DSKAT
Sbjct: 264 GRHNEMNALAAMALAE--AAGIPREGIVKALQVYGGLDHRFQAVKTN-DGVRWVNDSKAT 320
Query: 279 NLEATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNN----------------GL 321
N+ +T L L+ +LLGG K L K L+N L
Sbjct: 321 NVGSTVAALNGLQVAGTLYLLLGGDGKAADFSEL--KPLINKPNIVCYCFGQDGAQLAAL 378
Query: 322 SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
S V M+ A+ R GD ++LSP CAS D+F+NFE RG VF +LA
Sbjct: 379 SSQSVLVETMQQAIEQIRPQLKKGDMVLLSPACASLDQFKNFEERGQVFVKLA 431
>gi|427736837|ref|YP_007056381.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rivularia sp. PCC
7116]
gi|427371878|gb|AFY55834.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rivularia sp. PCC
7116]
Length = 469
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 192/395 (48%), Gaps = 62/395 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + E++ A + + SI +AVTGTNGK+TV + +G + G+ A GN+G
Sbjct: 87 KKGIETVGEMELAWRNLG-SIPWVAVTGTNGKTTVTSLIGAIFQTAGLNAPTCGNIGLAA 145
Query: 83 SEAAFH--------CIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
+E A + PSS + + E+SSYQ+E + P + + LTPDHL
Sbjct: 146 TEIALEDKQRGQNSSPSSPSSPSNLEWIIAELSSYQIESSDS-LSPKIGIWTTLTPDHLA 204
Query: 135 RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE------------AIKGHRFNLAWI 182
RHKT++NY K L +++ + N +L + +IKG L
Sbjct: 205 RHKTVENYYSIKARLLKR---SQMQVFNADNPYLRKVGETDWQDAYWTSIKGKDNLLTGK 261
Query: 183 GAF--PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDI 238
G + G ++T+ T++ E + VS L++ +G HN N +VAA +
Sbjct: 262 GFYIEDGWVVETQI-TSTSEDQKIMPVSALRM-----VGEHNLQNLLLSVAAARL----A 311
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
G++ A++ I PHR++ + R I+G+ +++DSKATN +A GL +K +++
Sbjct: 312 GIEKSAIHQAISEFSGVPHRLEHI-RTIEGIDFINDSKATNYDAAEVGLASVKS-PAILI 369
Query: 299 LGGQAKFGYSGVLIWK------TLVNNGLSIPCFA-------------VANMKDAVNHAR 339
GG AK G I + ++ G + P FA + M+ AV H
Sbjct: 370 AGGAAKAGNDKPWIDQIKQKAAAVLLIGDAAPVFAKRFEEEGYSNYEDMGTMEKAVTHGL 429
Query: 340 RMATNGDA--IVLSPGCASFDEFRNFEHRGMVFQE 372
++A DA ++LSP CASFD++ NFE RG F++
Sbjct: 430 KLAKQHDAKVVLLSPACASFDQYANFEVRGDDFRK 464
>gi|261378423|ref|ZP_05982996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
cinerea ATCC 14685]
gi|269145199|gb|EEZ71617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
cinerea ATCC 14685]
Length = 445
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 180/380 (47%), Gaps = 49/380 (12%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G V+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGCVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEA-----ELQREGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
YA TK +F ++N + A+K + W E +T
Sbjct: 203 YAHTKAKIFRGDGVQVLNA--------DDAFCRAMKRAGREVKWFSLEHEADFWLERETG 254
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ G + ++ + G H + A V A L +G+ EAL ++ + PH
Sbjct: 255 CLK---QGDEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPREALLEHVKTFQGLPH 309
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------- 304
R++ + GV ++DDSK TN+ AT + L+ + ++LGG K
Sbjct: 310 RVEKIGEK-NGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKGQDFTPLRDALKD 367
Query: 305 -------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
G I + L GL++ A +++AV A A GD ++LSP CASF
Sbjct: 368 KAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYTQAEAGDIVLLSPACASF 425
Query: 358 DEFRNFEHRGMVFQELAFSA 377
D F+ + HR VF E AF A
Sbjct: 426 DMFKGYAHRSEVFIE-AFKA 444
>gi|429748002|ref|ZP_19281229.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 380 str. F0488]
gi|429161719|gb|EKY04096.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 380 str. F0488]
Length = 444
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 184/376 (48%), Gaps = 48/376 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+SE++FA+Q I + +TG+NGK+T + G++ +GGN+G
Sbjct: 84 EKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTYHIFKEAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF-- 199
Y +K + + + ++ + + + H I I+ E +F
Sbjct: 193 YINSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEKELPQGAFLK 248
Query: 200 ----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ +++ + + + G+HN N A SV + + +L +++ +
Sbjct: 249 DNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRESLKGFKGA 306
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGVLIWK 314
PHR++ V + ++GVT+V+DSKATN+ + L +K V ++GGQ K Y+ +L +
Sbjct: 307 PHRLEEV-KVVEGVTYVNDSKATNVNSVYYALDTIKT-PIVWIVGGQDKGNDYNSLLPY- 363
Query: 315 TLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCA 355
+ +I C V N M +AV A+ A GD ++LSP CA
Sbjct: 364 -IHEKVRAIVCLGVDNSPIIQSFHNTIGTLVETRSMDEAVKLAQGFAQEGDTVLLSPACA 422
Query: 356 SFDEFRNFEHRGMVFQ 371
SFD F+N+E RG +F+
Sbjct: 423 SFDLFKNYEERGDLFK 438
>gi|404403189|ref|ZP_10994773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fuscovaginae UPB0736]
Length = 448
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 167/357 (46%), Gaps = 54/357 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G VGGNLG P AL + V+
Sbjct: 111 IVAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLGDDIDLYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTEQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
++E + F L F GV+ + K FE + + +H +K+
Sbjct: 221 ---SRPLMSEGLPCWTFGLGKPDFKTF-GVREENGEKYLGFEFQNL-----MPVHELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V R+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-REHHGVNYYNDSKAT 328
Query: 279 NLEATCTGLMDLK---GHKCVILLGGQAK--------------------FGYSGVLIWKT 315
N+ A + L G K V++ GG K G L+ +
Sbjct: 329 NVGAALAAIEGLGADIGGKLVLIAGGDGKGADFSALRAPVVANCRAVVLLGRDAELLAQA 388
Query: 316 LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
L G +P V + +AV + +A +GDA++LSP CAS D F+NFE RG +F +
Sbjct: 389 L---GDEVPLIRVQTLDEAVQRSAELAHSGDAVLLSPACASLDMFKNFEERGRLFAQ 442
>gi|429759638|ref|ZP_19292136.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica KON]
gi|429179599|gb|EKY20846.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica KON]
Length = 454
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 178/369 (48%), Gaps = 44/369 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A V I L VTGTNGK+T T + Q++ G+ VGGN+G+ LSEAA+
Sbjct: 95 VVSEVELAYDVCKSPI--LGVTGTNGKTTTTTLLTQVMESTGLPVKVGGNIGDSLSEAAY 152
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
H P+ V E+SSYQ+E K FCP ++VLN+TPDHL RHKTM+NYA K
Sbjct: 153 HM-------PEGGYLVAELSSYQLETI-KSFCPLGAIVLNVTPDHLARHKTMENYAAAKA 204
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT----EAKT--ASFEV 201
+F + +L + + KG + I K+D+ E T A +
Sbjct: 205 RIFMNQNPENFVVLNDDDPIVRAMKKGAHSKVLSISQHH--KVDSGAYFEGNTCYAVLDG 262
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
A V+ +H + G HN N + A+ L +GV VE + TIE HR++
Sbjct: 263 KATPVIDTEHIH---IKGSHNIEN--ILAVIALTYALGVKVEHIKHTIEQFHGVEHRLER 317
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF-----------GYSGV 310
V VT+ +DSKATN ++ L D ++L GG K Y+
Sbjct: 318 V-TTFHDVTFYNDSKATNTDSVVKAL-DAFDKPVILLAGGHDKMTPLEDFMNIVKAYTKE 375
Query: 311 LIWKTLVNNGLSIPCFAVA--------NMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
+I+ + + +MK+AV ++A GD ++LSP C+SFD +
Sbjct: 376 VIFMGEAADRFESVAVKMGVQHIHRAQSMKEAVALGYQLAKAGDIVLLSPACSSFDWYSC 435
Query: 363 FEHRGMVFQ 371
FE RG F+
Sbjct: 436 FEERGEDFK 444
>gi|269118797|ref|YP_003306974.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sebaldella
termitidis ATCC 33386]
gi|268612675|gb|ACZ07043.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sebaldella
termitidis ATCC 33386]
Length = 445
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/413 (26%), Positives = 189/413 (45%), Gaps = 71/413 (17%)
Query: 9 LEFQLKATGL---ACLLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
+EF +K+ G+ A LL+ V+SE+D A + + + KI+++TGTNGK+T T +
Sbjct: 50 IEFIVKSPGIPWDAELLEKADSLRISVISEIDLAYRYMDKKTKIISITGTNGKTTTATKI 109
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
++L G +A + GN A F L S + V+E+SSYQ+E +
Sbjct: 110 YELLKEAGFDAELAGN-------AGFSFAKLVSDGKEPDYVVLELSSYQLE-NDPEVHSH 161
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG----------NQHLNEA 171
++ ++NLTPDHL R+ ++ +Y TK ++F H L+ N+ +++
Sbjct: 162 IAGIINLTPDHLTRYNSLDDYYKTKFNIFDHQNENDYALINLDDKEILRIISENKDIDDK 221
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------LQLHNMKVMGRHNY 223
IK R L+ E K F+ + V+ ++ + + G+HN
Sbjct: 222 IKAKRIFLSG-----------EKKADVFQKDGMINVTDHNSQLIPLMKTSELSLKGKHNL 270
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT-WVDDSKATNLEA 282
N + + +G+ + VD+E + S + + HR++ +G T +++DSK TN E+
Sbjct: 271 EN--ILFIISVGMILNVDIEVMKSFLSSTKPLEHRLENFFE--KGKTVFINDSKGTNSES 326
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWK---------------TLVNNGLSIPCFA 327
T + G V++ GG K + LI K ++ L +
Sbjct: 327 TIKAIEAF-GKSTVLICGGYDKQASNKELIDKIAEKVEFVYLIGQTSDILEKELKDQKYT 385
Query: 328 -VANMKDAVNHARRMATNGD-----AIVLSPGCASFDEFRNFEHRGMVFQELA 374
N+K N + N D ++ SP +SFD+F+NFE RG +F+EL
Sbjct: 386 QYKNLKTLENVLNDIKDNLDFSKEQVVLFSPATSSFDQFKNFEDRGRIFKELT 438
>gi|409417636|ref|ZP_11257669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. HYS]
Length = 448
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 163/352 (46%), Gaps = 44/352 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS---HMVNTKLGLL 161
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +V + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
+ + N AF G++ + K +FE + + + +K+ G H
Sbjct: 221 SRPLLAEGQPVWTFGLNTPDFKAF-GLREENGEKYLAFEFHNL-----MPVRELKIRGAH 274
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N NA A G +G+ ++A+ S++ HR Q + R+ GV W DDSKATN+
Sbjct: 275 NQSNALAALAL--GHAVGLPMDAMLSSLRSFAGLAHRCQWI-RERNGVNWYDDSKATNVG 331
Query: 282 ATCTGL----MDLKGHKCVILLGGQAKFGYSGVLIWKTLVNN-----------------G 320
A + D+ G K V++ GG K L N G
Sbjct: 332 AALAAIEGLGADIDG-KLVLVAGGDGKGADFSALTAPVAANCRAVVLLGRDAERLAEALG 390
Query: 321 LSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+P V + +AV +A GDA++LSP CAS D F+NFE RG +F +
Sbjct: 391 DGVPLIRVKTLDEAVQQCAELARPGDAVLLSPACASLDMFKNFEERGRLFAQ 442
>gi|410658123|ref|YP_006910494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dehalobacter sp.
DCA]
gi|410661113|ref|YP_006913484.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dehalobacter sp.
CF]
gi|409020478|gb|AFV02509.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dehalobacter sp.
DCA]
gi|409023469|gb|AFV05499.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dehalobacter sp.
CF]
Length = 455
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 168/358 (46%), Gaps = 49/358 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I +TG+NGK+T T VG++ G E V GN+G L H + + V
Sbjct: 109 IAGITGSNGKTTTTTLVGELAKETGREMVVAGNIGLALCGQVEHL-------DQNGIIVA 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E+ N+ +++ LNLTPDHL+RH +++ YA K + + L +L +
Sbjct: 162 ELSSFQLELINRTRV-NIAIFLNLTPDHLDRHGSLEKYAAAKARILENQTEQDLAILNWD 220
Query: 165 NQHLNEAIKGHRFNLAWIGA---FP-GVKIDTE----AKTASFEVPAVGVVSQLQLHNMK 216
+ + E + + + P G+ ++ E K S +G +
Sbjct: 221 DPIVKELAAKAKARVVFFSLKENLPDGICLNGEDIVLKKDHSVAATIIG------RRELL 274
Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
+ G HN N AAVAA L+ G+D+ + + + HR +IV R V +++D
Sbjct: 275 LRGGHNLENVMAAVAA----ALEFGLDISKIADVLRHFQPVKHRQEIVGR-FDNVLYIND 329
Query: 275 SKATNLEATCTGLMDLKGHKCVILLGGQAK------FGYSGVLIWKTLVNNGLSIP---- 324
SK TN +++ L + V++ GG+ K F + K+L+ G++ P
Sbjct: 330 SKGTNPDSSIKALQSYE-EPIVLIAGGKNKGLDMTEFLQEARIRVKSLILVGMAAPELEE 388
Query: 325 ---------CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ KDAVN A A GD ++LSP C S+D F+++E RG +F++L
Sbjct: 389 IAVRLGFPNIIRTLDFKDAVNIAITEAVPGDVVLLSPACTSWDMFKSYEERGELFKDL 446
>gi|302344984|ref|YP_003813337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
melaninogenica ATCC 25845]
gi|302150055|gb|ADK96317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
melaninogenica ATCC 25845]
Length = 443
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 186/375 (49%), Gaps = 43/375 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + + K++ +TG+NGK+T + + + G +A + GN+GN
Sbjct: 82 LIAQGTHIISEIEFAGRYT--NSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + TK + N + +F++ + +P ++ +
Sbjct: 190 FENYADAKMRIIQNQ--TKEDSFIYWNDDPVIKKELEKFDVHAV-CYPFSELKEKGSIGY 246
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILR 253
E + ++ ++ + GRHN +N+ A ++ DI G+ E + ++
Sbjct: 247 IEEGQYTIEQPEPFNMEQEDLSLTGRHNIYNSLAAGIAS---DISGIKKENIRKSLSDFP 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV--- 310
HR++ V + + GV +++DSKATN++A L ++ +I+ G Y+ +
Sbjct: 304 GVEHRLEKVCK-VAGVQYINDSKATNVDACWYALESMRTPTILIIGGKDKGNDYNSIKDL 362
Query: 311 -------LIW-----KTLVNN--GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
+++ K L +N L +P +MKD V +A GD ++LSP CAS
Sbjct: 363 VKQKCAGIVYLGADNKKLHDNFDDLGLPIRDTHSMKDCVAACAELAKPGDTVLLSPCCAS 422
Query: 357 FDEFRNFEHRGMVFQ 371
FD F+N E RG F+
Sbjct: 423 FDLFKNMEDRGEQFK 437
>gi|91201183|emb|CAJ74243.1| similar to UDP-N-acetylmuramoylalanine D-glutamate ligase
[Candidatus Kuenenia stuttgartiensis]
Length = 476
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 168/366 (45%), Gaps = 57/366 (15%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+ VTG+NGKST T +G +L + +VGGN+G L + L KP + V+E
Sbjct: 132 IGVTGSNGKSTTTTLIGDILQQTSNKIWVGGNIGKSL------LLQLEEMKPA-DIVVLE 184
Query: 106 VSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
+SS+Q+E + + P +S+V N++P+HL+RHK + +Y K ++ H + +L +
Sbjct: 185 LSSFQLESLSSIKKSPCISIVTNISPNHLDRHKDIDSYIHAKKNIILHQKQSDSAILNYD 244
Query: 165 NQHLNEAIKGHRFNLAWI--------GAF---PGVKIDTEAKTASFEVPAVGVVSQLQLH 213
+ L K + W GAF + I + T S +P V
Sbjct: 245 DTELRTWGKECYGRVLWYSTQQPVENGAFRENEHIVISIDGNTIS--IPCVS-------- 294
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
+K+ G HN HN V A S G + + + T+ HR++ V R+ +G+ + +
Sbjct: 295 KIKLPGDHNLHN--VLAASCATYLHGANKQTIEKTVTSFCGLEHRLEFV-REAKGIRYYN 351
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------FGYSGVLIWKT----- 315
DSKAT E+ +M K V++ GG K + + VLI KT
Sbjct: 352 DSKATTPESAIAAIMSFKN--SVLIAGGYDKGSDFEEFAAICSNYCKAVVLIGKTANKIE 409
Query: 316 ----LVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L P VAN +KDA A + T G ++ SP CAS+D F N+E RG F
Sbjct: 410 ELISLKKGEKEYPHVCVANTLKDAFQTANTLTTPGGVLLFSPACASYDMFNNYEERGKQF 469
Query: 371 QELAFS 376
+ + S
Sbjct: 470 KNMVLS 475
>gi|167037226|ref|YP_001664804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320115645|ref|YP_004185804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|226722951|sp|B0K8K5.1|MURD_THEP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|166856060|gb|ABY94468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928736|gb|ADV79421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 454
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 189/377 (50%), Gaps = 54/377 (14%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 ELLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY K
Sbjct: 152 -----MEAAEGDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFG--------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+F + + +L + N+ R +L GA+ K S
Sbjct: 204 GRIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLENGAY--------IKDGS 255
Query: 199 FEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ G + + + + + G HN N A+AA SV L G+ + + +T++ + H
Sbjct: 256 IYISVNGNAEKIIDIEEIYIPGEHNLEN-ALAASSVAYLS-GISADVIANTLKTFKGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------FGYSG 309
R++ V +I GV + +DSK TN +A+ + LK V++ GG K ++G
Sbjct: 314 RIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDKGSEFDEFVKAFNG 371
Query: 310 -----VLIWKTL-----VNNGLSIP----CFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
+LI +T S P FA +++AV A A GD+++LSP CA
Sbjct: 372 KVKKLILIGQTAKKIRDTARKYSYPEDDILFA-GTLEEAVKKAYESAKEGDSVLLSPACA 430
Query: 356 SFDEFRNFEHRGMVFQE 372
S+D FRNFE RG +F++
Sbjct: 431 SWDMFRNFEERGRIFKK 447
>gi|256752933|ref|ZP_05493764.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
ethanolicus CCSD1]
gi|256748188|gb|EEU61261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
ethanolicus CCSD1]
Length = 450
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 189/377 (50%), Gaps = 54/377 (14%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 ELLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY K
Sbjct: 152 -----MEAAEGDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFG--------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+F + + +L + N+ R +L GA+ K S
Sbjct: 204 GRIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLENGAY--------IKDGS 255
Query: 199 FEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ G + + + + + G HN N A+AA SV L G+ + + +T++ + H
Sbjct: 256 IYISVNGNAEKIIDIEEIYIPGEHNLEN-ALAASSVAYLS-GISADVIANTLKTFKGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------FGYSG 309
R++ V +I GV + +DSK TN +A+ + LK V++ GG K ++G
Sbjct: 314 RIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDKGSEFDEFVKAFNG 371
Query: 310 -----VLIWKTL-----VNNGLSIP----CFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
+LI +T S P FA +++AV A A GD+++LSP CA
Sbjct: 372 KVKKLILIGQTAKKIRDTARKYSYPEDDILFA-GTLEEAVKKAYESAKEGDSVLLSPACA 430
Query: 356 SFDEFRNFEHRGMVFQE 372
S+D FRNFE RG +F++
Sbjct: 431 SWDMFRNFEERGRIFKK 447
>gi|281417761|ref|ZP_06248781.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum JW20]
gi|281409163|gb|EFB39421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum JW20]
Length = 466
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 179/397 (45%), Gaps = 75/397 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V SE++ ++ P +I AVTG++GK+T T + ML G + ++GGN+G PL
Sbjct: 99 EEGTEVTSEMEVFFELCP--AEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ K +V V+E+SS+Q+ K P V+VV N++P+HL+ HK+M+ Y
Sbjct: 157 ------LSKIEEIKDTDKV-VLELSSFQLHTMTK--SPNVAVVTNVSPNHLDVHKSMEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNE---AIKGH-----RFNLAWIGA--------FP 186
K ++F + +L F N E KG R + GA F
Sbjct: 208 VFAKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFR 267
Query: 187 GVKIDTE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ +TE AK + +P V HN N A +V+ VD + +
Sbjct: 268 DGETETEIAKASDIVIPGV----------------HNVENFLAATAAVIDC---VDRDVI 308
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK- 304
HR+++V R+I GV + +DS A++ T GL K K +++ GG K
Sbjct: 309 RKVATTFTGVEHRIELV-REINGVKFYNDSIASSPTRTIAGLNSFK-DKVILIAGGYDKK 366
Query: 305 -------------------FGYSGVLIWKTLVNN------GLSIPCFAVANMKDAVNHAR 339
G + I K L + G IP ++++AV A
Sbjct: 367 IPYDALGPVIAEKVKCLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEEAVKVAY 426
Query: 340 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
R A+ GD ++LSP ASFD F+NFE RG F+E+ S
Sbjct: 427 RFASVGDVVILSPASASFDMFKNFEERGNRFKEIVNS 463
>gi|427384544|ref|ZP_18881049.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
oleiciplenus YIT 12058]
gi|425727805|gb|EKU90664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
oleiciplenus YIT 12058]
Length = 444
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 185/378 (48%), Gaps = 46/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEQGTPVISEIEFAGRYT--HAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVATEQHDYYVIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+ Y K + + + + + + H A + F VK D E
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIFWNDDPIIKRELDKHGLR-AHLYPFSAVKEDGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G++ E + + +
Sbjct: 249 DGEVEINEP---IAFNMEQEKLALQGTHNLYNSLAAGISA-NL-AGIEKEYIRRALSDFK 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV-- 310
HR++ V ++GV +++DSKATN+ + L +K K V++LGG+ K Y+ +
Sbjct: 304 GVEHRLEKVAT-VRGVEFINDSKATNVNSCWYALQSMKT-KTVLILGGKDKGNDYTEIED 361
Query: 311 --------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLSPGC 354
L++ L N L +P V MKDAV+ A R+A G+ ++LSP C
Sbjct: 362 LVRDKCSALVYLGLHNEKLHDFFDRMGLPVADVQTGMKDAVDAAFRLAKKGETVLLSPCC 421
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F+++E RG F+E
Sbjct: 422 ASFDLFKSYEDRGDQFKE 439
>gi|299147132|ref|ZP_07040199.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
3_1_23]
gi|298515017|gb|EFI38899.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
3_1_23]
Length = 444
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 188/382 (49%), Gaps = 54/382 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GIAKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYS 308
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYT 357
Query: 309 GV----------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVL 350
+ L++ L N L +P V MKDAV A ++A G+A++L
Sbjct: 358 EIEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGEAVLL 417
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CASFD F+++E RG F+E
Sbjct: 418 SPCCASFDLFKSYEDRGDQFKE 439
>gi|227538299|ref|ZP_03968348.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Sphingobacterium spiritivorum ATCC 33300]
gi|227241814|gb|EEI91829.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Sphingobacterium spiritivorum ATCC 33300]
Length = 457
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 181/387 (46%), Gaps = 56/387 (14%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L Q G V+ E++FAAQ ++ +TG+NGKST +L G+ + GN
Sbjct: 90 VVALKQKGIPVIGEIEFAAQYT--DARLYCITGSNGKSTTTMLTYYILQKAGVNVGLAGN 147
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH 136
+G AL ++ +F V V+E+SS+ ++ + Y F V+V+LN+TPDHL+R+
Sbjct: 148 IG--------RSFALQVAQEQFDVYVLEISSFMLD--DMYQFRADVAVILNITPDHLDRY 197
Query: 137 K-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAF-----P 186
M+NY +K + + + ++ E +KG H W P
Sbjct: 198 DHKMENYVDSKFRMIRNQTANDYFIYCLDDE---ETVKGLERHHTEATIWPMTQEQVINP 254
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL--SVLGLDIGVDVEA 244
G +D E K P G + ++ + G+HN +N A L V L E+
Sbjct: 255 GAYLDQE-KNIIINTPK-GEQFIMNTEDLSLQGKHNVYNNMAAGLVAKVQELRNRSMQES 312
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
++S + I PHR++ V I GV +++DSKATN+ + L + V+++GG K
Sbjct: 313 MSSYVNI----PHRLEHVAC-IGGVNYINDSKATNVNSVWYALESF-SPQIVLIMGGVDK 366
Query: 305 FGYSGVLIWKTLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNG 345
G ++ + + +I C N MKDAV A +A G
Sbjct: 367 -GNDYEMLRDLVRSKVRAIICIGKDNTRIHESFEEDTDVIVNSSSMKDAVEIASHIAQKG 425
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQE 372
D ++LSP CASFD F+N+E RG F+E
Sbjct: 426 DTVLLSPACASFDWFKNYEERGDKFKE 452
>gi|378768550|ref|YP_005197023.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea ananatis
LMG 5342]
gi|365188036|emb|CCF10986.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea ananatis
LMG 5342]
Length = 438
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 176/370 (47%), Gaps = 82/370 (22%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---------ALSLLKAPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGADARCVSFGIDIGDYHLNK-----QQGSIWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A +GL + AL + + PHR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGL----PHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNG 320
H+ +GV W++DSKATN+ +T L L+ + + +LLGG K +S + + L +
Sbjct: 308 HQS-RGVRWINDSKATNVGSTEAALKGLQVNGTLWLLLGGDGKSADFSPLATY--LQGDR 364
Query: 321 LSIPCF-----AVANMK-----------DAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
+ + CF A+A ++ A+ R D ++LSP CAS D+FRNFE
Sbjct: 365 IRLYCFGRDGDALATLRPDAAVRTDTLQQAMEQIARQVQPDDMVLLSPACASLDQFRNFE 424
Query: 365 HRGMVFQELA 374
RG VF +LA
Sbjct: 425 QRGDVFAQLA 434
>gi|188532900|ref|YP_001906697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
tasmaniensis Et1/99]
gi|188027942|emb|CAO95799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia
tasmaniensis Et1/99]
Length = 438
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 167/354 (47%), Gaps = 44/354 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP----ALTLLQQPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +
Sbjct: 158 ELSSFQLETTSS-LKAAAATLLNVTEDHMDRYPLGMQQYRAAKLRIYENATACVVN---- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGA-FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ + I+G GA F + + + V V++ ++H ++G+HN
Sbjct: 213 ADDAMTMPIRGADARCVSFGADFGDYHLTRQQGSTWLRVQGEKVLNTDEMH---LVGQHN 269
Query: 223 YHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y NA A +GL ++AL + PHR Q+VH GV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRATSLKALTT----FNGLPHRFQLVHEH-NGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA------------ 327
+T L L + +LLGG K L + L + + CF
Sbjct: 325 GSTEAALNGLHPAGTLWLLLGGDGKSADFTPLT-RYLQGERIRVYCFGRDGAELAALRPE 383
Query: 328 ----VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA 377
A M +AV GD ++LSP CAS D+F+NFE RG +F +LA A
Sbjct: 384 IAVQTATMAEAVRQIAAQVRPGDLVLLSPACASLDQFKNFEQRGDLFAQLAREA 437
>gi|354582291|ref|ZP_09001193.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
lactis 154]
gi|353199690|gb|EHB65152.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
lactis 154]
Length = 477
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 118/411 (28%), Positives = 193/411 (46%), Gaps = 91/411 (22%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G V++E++ A + + ++ +TG+NGK+T T+VGQ+L G+ V GN+G P
Sbjct: 93 MELGVPVVTEVEVAYHIC--AAPMIGITGSNGKTTTTTWVGQLLEDAGLSPIVAGNIGTP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
LSEAA + P + VVE+SS+Q++ + F P ++ +LN+ HL+ H M +
Sbjct: 151 LSEAAQE------ANPDNWM-VVELSSFQLK-GTEDFRPRIAALLNIAETHLDYHGGMDD 202
Query: 142 YALTKCHLFSHMVNT-------------------KLGLLPFGNQHLNEAIKGHRFNLAWI 182
Y +K LF++ K +LPF +NE ++ + +
Sbjct: 203 YIASKAKLFANQTADDTAVLNWDDPVCRSLVPYIKARILPF---SMNEVLREGVYVMPPY 259
Query: 183 GA---FPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233
GA PG + + T+ K + E+ +++ N+ + GR N NA A S
Sbjct: 260 GAEGQMPGGEEPERTVVYTDEKGFTHEI--------IRVENIGLPGRFNVGNALAA--SA 309
Query: 234 LGLDIGVDVEALNSTIEILRTPPHRMQIV-HRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
+ + GV + L + R HR++ V RD G+ + ++SKATN +AT L K
Sbjct: 310 IAITAGVSPDRLEPVLSSFRGVEHRLEFVDERD--GIAYYNNSKATNSKATNMALTSFK- 366
Query: 293 HKCVILLGGQAKFGY--------------SGVLIWKT-----------------LVNNGL 321
+ V+L+ G G + VL+ +T LV+NG
Sbjct: 367 -EPVVLIAGGLDRGSDYEELVPSLRERVKAVVLLGQTKEKIAAAAEKAGLKQIILVDNGK 425
Query: 322 SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
A + AV A R+A GD ++LSP CAS+D F +FE RG +F+E
Sbjct: 426 D----AADTLTMAVQEAARLAEPGDIVLLSPACASWDMFPSFEVRGRIFKE 472
>gi|326391690|ref|ZP_08213215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
ethanolicus JW 200]
gi|325992268|gb|EGD50735.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
ethanolicus JW 200]
Length = 454
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 188/374 (50%), Gaps = 48/374 (12%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 EVLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNAGRKVYVAGNIGYPLIYA- 150
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL RHKT ++Y K
Sbjct: 151 ----VMEATEGDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLNRHKTFESYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEV 201
+F + + +L F ++ + N A FP + + K S +
Sbjct: 204 GRIFENQRGDEYTVLNF-----DDPVTWSLKNKAKCRVFPFSRKSSLENGAYVKDGSIYI 258
Query: 202 PAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
G + + + + + G HN N A+AA SV L G+ + ST++ + HR++
Sbjct: 259 SVNGNAKKIIDIEEIYIPGEHNLEN-ALAASSVAYLS-GISANVIASTLKSFKGVEHRIE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------FGYSG--- 309
V +I GV + +DSK TN +A+ + LK V++ GG K ++G
Sbjct: 317 FVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDKGSEFDEFVKAFNGKVK 374
Query: 310 --VLIWKTL-----VNNGLSIP----CFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+LI +T S P FA +++AV A A GD+++LSP CAS+D
Sbjct: 375 KLILIGQTAKKIRDTARKYSYPEDDILFA-GTLEEAVKKAYESAKEGDSVLLSPACASWD 433
Query: 359 EFRNFEHRGMVFQE 372
FRNFE RG +F++
Sbjct: 434 MFRNFEERGRIFKK 447
>gi|291616270|ref|YP_003519012.1| MurD [Pantoea ananatis LMG 20103]
gi|291151300|gb|ADD75884.1| MurD [Pantoea ananatis LMG 20103]
Length = 438
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 173/370 (46%), Gaps = 82/370 (22%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---------ALSLLKAPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGADARCVSFGIDIGDYHLNK-----QQGSIWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A +GL + AL + + PHR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGL----PHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNG 320
H+ +GV W++DSKATN+ +T L L+ + + +LLGG K +S + + L +
Sbjct: 308 HQS-RGVRWINDSKATNVGSTEAALKGLQVNGTLWLLLGGDGKSADFSPLATY--LQGDR 364
Query: 321 LSIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
+ + CF ++ A+ R D ++LSP CAS D+FRNFE
Sbjct: 365 IRLYCFGRDGDALAALRPDVAVRTDTLQQAMEQIARQVQPDDMVLLSPACASLDQFRNFE 424
Query: 365 HRGMVFQELA 374
RG VF +LA
Sbjct: 425 QRGDVFAQLA 434
>gi|212702355|ref|ZP_03310483.1| hypothetical protein DESPIG_00368 [Desulfovibrio piger ATCC 29098]
gi|212674233|gb|EEB34716.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio
piger ATCC 29098]
Length = 436
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 169/375 (45%), Gaps = 65/375 (17%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G +++E++ A + + +LAVTGT+GK+T V+ ML G+ F+GGN+G PLS
Sbjct: 103 EGTEILAEMELAWRALDGE-PVLAVTGTSGKTTTVSLAAAMLREQGLRVFLGGNIGTPLS 161
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
E S K V V+E SS+Q++ + F P V+VVLN++P+HL+ HK M+ Y
Sbjct: 162 EYLL-------SGEKADVLVLETSSFQLQCCST-FHPRVAVVLNISPNHLDYHKDMEEYI 213
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWI---GAFPGVKIDTEAKTAS 198
K LF L +L L E A G R WI G FP
Sbjct: 214 EAKFRLFRCQTEEDLAVLA---PELEETAARFGLRARKVWIRPEGRFP------------ 258
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ + G+HN NA A + GV +E + + P+R
Sbjct: 259 ---------------DCPLFGQHNQFNAEAAWQAC--RPFGVTLENAARAVAAFKPLPNR 301
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----FGYSGVLIWK 314
++ V R + GV +V+DSK T + A L + H +L GG+ K G +L K
Sbjct: 302 LESVAR-VHGVLYVNDSKCTTVAALEVALEAMD-HPVHLLCGGKFKGGDLDGMKDLLRRK 359
Query: 315 TLVNN--GLSIPCFAVA-----------NMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
N G S F A M+DAV + GD ++L+P +SFD++R
Sbjct: 360 AKSVNLYGASREIFEAAWQGVVPLCWHERMEDAVLALQDKVGEGDVVLLAPATSSFDQYR 419
Query: 362 NFEHRGMVFQELAFS 376
N+ RG F+ + S
Sbjct: 420 NYVERGNDFKRIVGS 434
>gi|398869798|ref|ZP_10625155.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM74]
gi|398210210|gb|EJM96862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM74]
Length = 448
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 170/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD++GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLEGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGKGAEFKDLRDPVAANCRAVVLMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P VA++ +AV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRVASLVEAVEQCRAAAQPGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|404252666|ref|ZP_10956634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
PAMC 26621]
Length = 364
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 168/373 (45%), Gaps = 68/373 (18%)
Query: 28 VMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++ +++ AQ +PR K++ +TGTNGKST V +L I + +GGN+G P+ E
Sbjct: 28 ILGDIELFAQARSDLPRH-KVVGITGTNGKSTTTALVHHILQTAKIPSLMGGNIGLPILE 86
Query: 85 AAFHCIALPSSKPKFQ--VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+P + V V+E+SSYQ+++ C V+V+LN+TPDHL+R+ Y
Sbjct: 87 ----------QQPLTEGGVYVLELSSYQIDLTQSLDC-DVAVLLNITPDHLDRYDGFDAY 135
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
A +K LF ++ G+ + ++ L I PGV +D
Sbjct: 136 AASKARLFEMQSPEHAAIIGIGDTPSALIARSLSARSEQLTKIA--PGVCMD-------- 185
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
Q + G HN NA A L GV A++ + PHRM
Sbjct: 186 -----------QSRWPSLQGPHNAQNALAAIAVAQAL--GVSEAAIDEGLRSFTGLPHRM 232
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------------- 304
+ V R GV WV+DSKATN E+T L + +LGG+AK
Sbjct: 233 ERV-RTHNGVAWVNDSKATNPESTAPALAAFD--RIHWILGGEAKSDDLDACAPRFGHIA 289
Query: 305 ----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
G +G L +P ++ AV A R A GD ++LSP CASFD+F
Sbjct: 290 SAYTIGAAGPRFAAILAGK---VPVEQCGDLATAVAAAYRSAAPGDTVLLSPACASFDQF 346
Query: 361 RNFEHRGMVFQEL 373
R+FE RG F+ L
Sbjct: 347 RDFEDRGNQFRTL 359
>gi|256820163|ref|YP_003141442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
ochracea DSM 7271]
gi|256581746|gb|ACU92881.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
ochracea DSM 7271]
Length = 444
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 183/376 (48%), Gaps = 48/376 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+SE++FA+Q I + +TG+NGK+T + G++ +GGN+G
Sbjct: 84 EKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTYHIFKEAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATKNPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF-- 199
Y +K + + + ++ + + + H I I+ E +F
Sbjct: 193 YIDSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEKELPQGAFLK 248
Query: 200 ----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ +++ + + + G+HN N A SV + + +L +++ +
Sbjct: 249 DNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRESLKGFKGA 306
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGVLIWK 314
PHR++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K Y+ +L +
Sbjct: 307 PHRLEEV-KVVDGVTYVNDSKATNVNSVFYALDTIKT-PIVWIVGGQDKGNDYNSLLPY- 363
Query: 315 TLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCA 355
+ +I C V N M +AV A+ A GD ++LSP CA
Sbjct: 364 -VHEKVRAIVCLGVDNTPIIQSFYNTIDTLVETRSMDEAVKLAQSFAQEGDTVLLSPACA 422
Query: 356 SFDEFRNFEHRGMVFQ 371
SFD F+N+E RG +F+
Sbjct: 423 SFDLFKNYEERGDLFK 438
>gi|167614190|gb|ABZ89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
aphidicola]
Length = 438
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 179/380 (47%), Gaps = 65/380 (17%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++S+++ ++ ++ I+++TGTNGKSTV T V + G + ++GGN+G P
Sbjct: 90 GIEIISDIELFSR--ETTVPIISITGTNGKSTVATIVKNIAKKSGYKVYLGGNIGFP--- 144
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT-VSVVLNLTPDHLERHKT-MKNY 142
AL + K + ++E+SS+Q+E N + + +SVVLN+ DHL+R+ + Y
Sbjct: 145 ------ALDMLEKKADLYILELSSFQLE--NIFSLKSKLSVVLNINEDHLDRYPDGFQQY 196
Query: 143 ALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
K ++ + ++N + F N+H G D++ +S
Sbjct: 197 KKIKLSIYKNSEICLINLREKKYCFKNKHKKYITFGTN--------------DSDYYVSS 242
Query: 199 FEVPAVGVVSQLQLHNMKVMGRH---NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ Q ++ +M H NY NA V+ ++ D + ++
Sbjct: 243 IKDKIFLYYKQKKIFDMSKTSIHEHQNYENALVSLAISDAMNFPRD--KVKYVFSNFKSL 300
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK---------- 304
PHR QIVH+ ++W++DSK+TN+ +T L ++ + +LLGG K
Sbjct: 301 PHRFQIVHKH-NDISWINDSKSTNINSTKIALSNINTKGTIWLLLGGDKKSANFQILKND 359
Query: 305 ----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
FG G+ I K + I N+KDA+ + +GD ++LSPGC
Sbjct: 360 LEKLKVKIYCFGKDGMNIAKIFQKKSIYI-----ENLKDAMILISKEVMSGDIVLLSPGC 414
Query: 355 ASFDEFRNFEHRGMVFQELA 374
+S D+F+NFE RG +F L+
Sbjct: 415 SSKDQFKNFEERGNLFITLS 434
>gi|297544895|ref|YP_003677197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842670|gb|ADH61186.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 454
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 189/377 (50%), Gaps = 46/377 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q V E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL
Sbjct: 90 QKKIEVFGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNAGRKVYVAGNIGYPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
A + +S+ F VA E+SS+Q+E K F P +S ++N+TPDHL RHKT +NY
Sbjct: 148 IYAV-----MEASEDAFIVA--EISSFQLETI-KEFKPKISCIINITPDHLNRHKTFENY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F + + +L F ++ + N A FP + ++ A +
Sbjct: 200 RDIKGRIFENQRENEYTVLNF-----DDPVTWSLKNKAKCRVFPFSRKNSLENGAYVKNG 254
Query: 203 AVGVVSQ------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
++ + + + + + G HN N A+AA SV L G+ V+ + +T++ +
Sbjct: 255 SIYISVDKNAKKIIDIEEIYIPGEHNLEN-ALAASSVAYLS-GISVDVIANTLKTFKGVE 312
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------FGYS 308
HR++ V +I GV + +DSK TN +A+ + LK V++ GG K ++
Sbjct: 313 HRIEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-PPIVLIAGGYDKGSEFDEFVKAFN 370
Query: 309 G-----VLIWKTLVNNGLSIPCFAVAN--------MKDAVNHARRMATNGDAIVLSPGCA 355
G +LI +T + + +++AV A A GD+++LSP CA
Sbjct: 371 GKVKKLILIGQTAKKIKDTAKKYYYPEDDILFADTLEEAVKKAYESAKEGDSVLLSPACA 430
Query: 356 SFDEFRNFEHRGMVFQE 372
S+D FRNF+ RG +F++
Sbjct: 431 SWDMFRNFDERGRIFKK 447
>gi|344200892|ref|YP_004785218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
ferrivorans SS3]
gi|343776336|gb|AEM48892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
ferrivorans SS3]
Length = 448
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 178/371 (47%), Gaps = 45/371 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G +M +++ ++ SI +A+TG+NGKSTV T +G+M + G+ A VGGNLG P
Sbjct: 88 QAGIEIMGDIELFGRIARTSI--VAITGSNGKSTVTTLLGEMAHAAGLHAAVGGNLGTPA 145
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ LP + P+ ++ V+E+SS+Q+ ++F P + +LNL+PDHL+ H Y
Sbjct: 146 LD------LLPETGPEPELYVLELSSFQLA-SCQHFHPCAAAILNLSPDHLDWHGGYTAY 198
Query: 143 ALTKCHLFSHMVNTKLGLL----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
K +F M +L PF + G + F G D +A TA
Sbjct: 199 GSAKARIFQAMGAGDTLVLNAEDPFTAALPAQVPAGVQLR------FFGRADDRDAYTAD 252
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
++ L L + + G HN NA AAL +DI + A+ + PHR
Sbjct: 253 DQLCLRTDGPLLALDQLLLRGGHNTENALAAALLARAVDI--PLTAIRQALRNFSGLPHR 310
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
+ + ++ GV + DDSK TNL AT + L G V++LGG AK
Sbjct: 311 LAWI-AEVNGVNYYDDSKGTNLGATLKAMSGLPG-PLVMILGGDAKGADLSPLREACRGQ 368
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G G I L + +P A +M AV A +MA +GD ++LSP CAS D
Sbjct: 369 RGAIVLGKDGPHIAALLAD---VLPVHAANSMPAAVRAAAQMAQSGDQVLLSPACASTDM 425
Query: 360 FRNFEHRGMVF 370
F +++ RG F
Sbjct: 426 FTDYQDRGRQF 436
>gi|110801958|ref|YP_699716.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
perfringens SM101]
gi|118595651|sp|Q0SQ91.1|MURD_CLOPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|110682459|gb|ABG85829.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens SM101]
Length = 458
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 174/360 (48%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKIAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGVTKEKIKAAFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ V+ A+ +A NGD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVSIAKSIAENGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>gi|223041554|ref|ZP_03611755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus minor 202]
gi|223017649|gb|EEF16059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Actinobacillus minor 202]
Length = 434
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 114/402 (28%), Positives = 180/402 (44%), Gaps = 67/402 (16%)
Query: 5 WLFLLEFQLKATGLACL-------LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA +Q+G V+ +++ + I+A+TG NGKSTV
Sbjct: 63 WLLSSDLIVISPGLALATPEIQQAIQAGVEVVGDIELFCR--EAKAPIIAITGANGKSTV 120
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T +M GI+ +GGN+G P AL K +++ V+E+SS+Q+E
Sbjct: 121 TTLTTEMAKQAGIKVGMGGNIGVP---------ALSLLKGDYELYVLELSSFQLETTYS- 170
Query: 118 FCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLG---LLPFGNQHLNEAIK 173
+ +LN++ DH++R+ +++ Y K ++ + N + L + Q + + I+
Sbjct: 171 LKAKAATILNISEDHMDRYNNSVEEYRAAKLRIYQNAENIIVNGEDPLTYPTQAVEKLIR 230
Query: 174 GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233
N + K DT +++ +G+ M + GRHN NA A
Sbjct: 231 FAEQNAEY-----SKKNDT---LYAYDDAVIGI------KQMLIRGRHNEMNALAAMALA 276
Query: 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-G 292
G+ E + ++ PHR Q V + V WV+DSKATN+ +T L L+
Sbjct: 277 E--AAGIPREGIVKALQTYGGLPHRFQAVATN-DCVRWVNDSKATNVGSTVAALNGLEVA 333
Query: 293 HKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMK 332
+LLGG K FG G + K LS VA M+
Sbjct: 334 GTLYLLLGGDGKAADFSELIPLVNKANIVCYCFGQDGEQLAK------LSTQSVLVATMQ 387
Query: 333 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+AV R GD ++LSP CAS D+F+NFE RG +F LA
Sbjct: 388 EAVEQIRPQLKTGDMVLLSPACASLDQFKNFEERGNIFMALA 429
>gi|238916668|ref|YP_002930185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
eligens ATCC 27750]
gi|259509787|sp|C4Z534.1|MURD_EUBE2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|238872028|gb|ACR71738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
eligens ATCC 27750]
Length = 450
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 174/354 (49%), Gaps = 40/354 (11%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+A+TGTNGK+T VGQ++ + FV GN+GN ++ L +S+ + VA
Sbjct: 109 KIIAITGTNGKTTTTALVGQIIAAYNEKTFVVGNIGN-----SYTGEVLKTSEDSYTVA- 162
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E ++ F P VS +LN+TPDHL RH TM+ YA TK + + +L
Sbjct: 163 -EISSFQLETVHE-FHPIVSAILNITPDHLNRHHTMECYAWTKERISENQTKADTCVLNL 220
Query: 164 GNQHLNEAIKGHRFNLAWIGAF--PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
+++L + + N+ W + P V + + + L +H+M ++G+H
Sbjct: 221 EDKYLTDFAPECKANVVWFSSERKPSVGAYVDGEMIKY-TDGTNDYDMLNVHDMNLLGKH 279
Query: 222 NYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
NY N AA+A G+ + +E ++ + HR++ V GV + +DSK TN
Sbjct: 280 NYENVCAAIAMTKAAGIPDDIIIE----QVKKFKAVEHRIEYVATK-NGVDYYNDSKGTN 334
Query: 280 LEATCTGLMDLKGHKCVILLGGQAKFGYSG--------------VLIWKTLVNNGLSIPC 325
EA + + K IL+GG G VLI +T +
Sbjct: 335 PEAAVKAIEAMV--KPTILIGGGYDKGSEFDLYVKAFKDKVKLLVLIGQTSAKIADTCKK 392
Query: 326 FAVAN------MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ N M+ V+ + A +GDA++LSP CAS+ F N+E RG +F++L
Sbjct: 393 YGFENIEYADSMEQVVDICAKNAVSGDAVLLSPACASWGMFDNYEQRGRIFKDL 446
>gi|398876087|ref|ZP_10631247.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM67]
gi|398882466|ref|ZP_10637434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM60]
gi|398199008|gb|EJM85958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM60]
gi|398205379|gb|EJM92163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM67]
Length = 448
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 170/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLRDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGKGAEFNDLRDPVAANCRAVILMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P A++ +AV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRAASLVEAVQQCRAAAQPGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|386014663|ref|YP_005932940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
ananatis AJ13355]
gi|327392722|dbj|BAK10144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
ananatis AJ13355]
Length = 438
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 173/370 (46%), Gaps = 82/370 (22%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---------ALSLLKAPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGADARCVSFGIDIGDYHLNK-----QQGSIWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A +GL + AL + + PHR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGL----PHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNG 320
H+ +GV W++DSKATN+ +T L L+ + + +LLGG K +S + + L +
Sbjct: 308 HQS-RGVRWINDSKATNVGSTEAALKGLEVNGTLWLLLGGDGKSADFSPLATY--LQGDR 364
Query: 321 LSIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
+ + CF ++ A+ R D ++LSP CAS D+FRNFE
Sbjct: 365 IRLYCFGRDGDALAALRPDVAVRTDTLQQAMEQIARQVQPDDMVLLSPACASLDQFRNFE 424
Query: 365 HRGMVFQELA 374
RG VF +LA
Sbjct: 425 QRGDVFAQLA 434
>gi|229524389|ref|ZP_04413794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
bv. albensis VL426]
gi|229337970|gb|EEO02987.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
bv. albensis VL426]
Length = 467
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 165/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G + N G++A VGGN+G P AL P ++ V+
Sbjct: 137 VIAITGSNGKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVL 187
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLG 159
E+SS+Q+E + + LNL+ DH++R++ M++Y K +F H +VN
Sbjct: 188 ELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQ 246
Query: 160 LLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
P HL G +F+LA + EA A E +
Sbjct: 247 TFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------L 292
Query: 216 KVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++GRHN N +A L ++ + ++AL S + HR Q+V D G+ WV+
Sbjct: 293 SLVGRHNVANVLTVLALLDSAEVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVN 347
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----- 328
DSKATN+ +T L LK + LL G G + L + + CF V
Sbjct: 348 DSKATNVASTLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQF 407
Query: 329 ----------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 408 MPLHPSARFYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 463
>gi|288801604|ref|ZP_06407046.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
melaninogenica D18]
gi|288335646|gb|EFC74079.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
melaninogenica D18]
Length = 443
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 185/375 (49%), Gaps = 43/375 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + + K++ +TG+NGK+T + + + G +A + GN+GN
Sbjct: 82 LIAQGTHIISEIEFAGRYT--NSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + TK + N + +F++ + +P ++
Sbjct: 190 FENYADAKMRIIQNQ--TKEDSFIYWNDDPVIKKELEKFDVHAV-CYPFSELKENGSIGY 246
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILR 253
E + ++ ++ + GRHN +N+ A ++ DI G+ E + ++
Sbjct: 247 IEEGQYTIEQPEPFNMEQEDLSLTGRHNIYNSLAAGIAS---DISGIKKENIRKSLSDFP 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV--- 310
HR++ V + + GV +++DSKATN++A L ++ +I+ G Y+ +
Sbjct: 304 GVEHRLEKVCK-VAGVQYINDSKATNVDACWYALESMRTPTILIIGGKDKGNDYNSIKDL 362
Query: 311 -------LIW-----KTLVNN--GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
+++ K L +N L +P +MKD V +A GD ++LSP CAS
Sbjct: 363 VKQKCAGIVYLGADNKKLHDNFDDLGLPIRDTHSMKDCVAACAELAKPGDTVLLSPCCAS 422
Query: 357 FDEFRNFEHRGMVFQ 371
FD F+N E RG F+
Sbjct: 423 FDLFKNMEDRGEQFK 437
>gi|374595525|ref|ZP_09668529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gillisia limnaea
DSM 15749]
gi|373870164|gb|EHQ02162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gillisia limnaea
DSM 15749]
Length = 447
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 190/382 (49%), Gaps = 42/382 (10%)
Query: 15 ATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
AT + L+ G V+SE++FA++ KI+A+TG+NGK+T ++ +L + I A +
Sbjct: 79 ATIVKKLVSQGIPVVSEIEFASKYT--DAKIIAITGSNGKTTTTKWIHHILKNARISAGI 136
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHL 133
GN+G+ ++ ++ KF V+E+SS+Q++ I + F P ++V+ N+TPDHL
Sbjct: 137 AGNVGDSFAKQV--------AEEKFDWYVLELSSFQLDGIVD--FKPHIAVLTNITPDHL 186
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R+ + Y +K + + + + + E + H + K++
Sbjct: 187 DRYNYNLDEYVASKFRITKNQTEEDFFIYDADDNIITEWLNTHSVRAQKLPFSLQKKLEK 246
Query: 193 EAKTASFEVPAVGVVSQLQL--HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
A + + +Q + ++ + G+HN NA +AA +V L + + E + +++E
Sbjct: 247 GAYLEDNNIKINTLNTQFIMPTSSIALEGKHNTKNA-MAASTVANL-LKIRKETIRASME 304
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV 310
+ HR++ V + I V +++DSKATN+ AT L ++ I+ G YS +
Sbjct: 305 GFQAVEHRLEKVLK-INNVLYINDSKATNINATYYALDSMESETIWIVGGVDKGNNYSEL 363
Query: 311 LIWKTLVNNGL-SIPCFAVAN-------------------MKDAVNHARRMATNGDAIVL 350
L LVN + +I C V N M++A+ A ++ G+ ++L
Sbjct: 364 L---PLVNEKVKAIICLGVDNSRIFEAFGNCVDIMVETQFMEEAIKIAYKLGEKGNVVLL 420
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CASFD F N+E RG F++
Sbjct: 421 SPACASFDLFENYEDRGRQFKD 442
>gi|322436304|ref|YP_004218516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Granulicella
tundricola MP5ACTX9]
gi|321164031|gb|ADW69736.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Granulicella
tundricola MP5ACTX9]
Length = 451
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 180/370 (48%), Gaps = 36/370 (9%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ EL+ A++ + S+ +A+TG+NGK+T T G++ + VGGN+G P+ +
Sbjct: 92 GTAVIGELELASRFLDGSV--IAITGSNGKTTTTTLTGKIFADAALPTLVGGNIGLPVID 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ S+P+ +V+EVSS+Q+E F P +++VLN+TPDHL+RHKT + Y
Sbjct: 150 L------IAESRPETW-SVLEVSSFQLETATT-FKPRIAMVLNVTPDHLDRHKTFERYWE 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS-FEVPA 203
K + + + +L + + + R + W VK S F +
Sbjct: 202 AKARITACQESEDFLILNAEDVNAQKMAAKTRAQIYWFSGRRQVKQGAFVHGESVFFLGK 261
Query: 204 VGVVSQ--LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
G + L + + + G HN N AAV A + G+D E + + ++ R HR+
Sbjct: 262 EGGKPEPVLPVSEIALKGAHNVENVLAAVCAARL----AGIDAETIRAAVKGFRAVEHRL 317
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV-LIWKTLVN 318
++V R GV + +DSKATN++AT + G +IL G Y+ + + K V
Sbjct: 318 ELV-RVRNGVEFYNDSKATNVDATVKAVESFAGGIHLILGGKDKDSDYATLSALLKERVR 376
Query: 319 NGLSIPCFA---------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
+I A + AV A A + + ++L+P C+SFD+F N+
Sbjct: 377 VVYTIGSAAEKIERQLDGVVKIVQAGTLDKAVKLAAEAAVSDEIVLLAPACSSFDQFTNY 436
Query: 364 EHRGMVFQEL 373
E RG VF+++
Sbjct: 437 EERGRVFRDV 446
>gi|307244134|ref|ZP_07526252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus stomatis DSM 17678]
gi|306492505|gb|EFM64540.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Peptostreptococcus stomatis DSM 17678]
Length = 454
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 188/385 (48%), Gaps = 48/385 (12%)
Query: 18 LACLLQSGKRVMSELDFA-AQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
L L + GK V+SE++ A + ++IK + +TGTNGK+T + VG++ G++ +V G
Sbjct: 84 LVKLREMGKEVISEVELAYREGQEKNIKFIGITGTNGKTTTTSIVGEICKEAGLDTYVVG 143
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+GNP A A P + V V+E+SS+Q+E F P VS VLNLT DH+ RH
Sbjct: 144 NIGNPAISAVEE--AQPGA-----VLVIELSSFQLEAVYD-FRPEVSTVLNLTEDHMNRH 195
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPF--------GNQHLNEAIKGHRFNLAWIGAFPGV 188
TM+NYA K ++F+ + +L + GN + R + G +
Sbjct: 196 HTMENYAKAKANIFAKQTPESVCVLNYDDPITRDMGNTCQARPVYFSRQSRPEAGIYLDD 255
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ A EV V ++ + G HN N ++AA+ L L G+D E +
Sbjct: 256 NKNIIAVKDGREVEIVNA------EDLSLPGGHNLEN-SMAAIG-LCLHFGIDKEIIKKV 307
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---- 304
+ + HR++ V+ + GV +V+DSK TN ++T + K +++ GG K
Sbjct: 308 LTTFKAVEHRLEYVNT-VNGVVYVNDSKGTNPDSTIKAVQSYK-TPIILIAGGYDKGSDF 365
Query: 305 ----------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
G + LI T G+ + + ++K+AV A ++A D +
Sbjct: 366 RELFDIAVNYVRTVLVIGQTADLIADTAFKAGIK-EIYKLDSLKEAVIKASQIADKDDVV 424
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+LSP CAS+ ++N+E RG F+++
Sbjct: 425 LLSPACASWGMYKNYEERGQEFKDI 449
>gi|332292531|ref|YP_004431140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Krokinobacter sp.
4H-3-7-5]
gi|332170617|gb|AEE19872.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter sp.
4H-3-7-5]
Length = 445
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 189/388 (48%), Gaps = 52/388 (13%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + LL+ G V+SE++FA+Q +I + +TG+NGK+T G +L GI
Sbjct: 76 KAPIVQRLLEKGVAVISEIEFASQYTDATI--VGITGSNGKTTTTMLTGFILEQAGINLG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDH 132
V GN+G+ ++ ++ + V+E+SS+Q++ I + F P ++VVLN+TPDH
Sbjct: 134 VAGNIGDSYAKMV--------AQKEIDTYVLEISSFQLDGIAD--FAPHIAVVLNVTPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+R+ +NY +K + + T + + + +K H + +D
Sbjct: 184 LDRYDYKFENYIASKFRIAMNQKETDYLIYDADDPVSVDWLKKHPVKSKLLP----FSLD 239
Query: 192 TEAKTASFEVPAVGVVSQLQ-------LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
E + +F + + QL +N+ + G+HN NA +AA +V L + +
Sbjct: 240 KEFENGAF-IKDNNLTVQLNNNTFTMATNNLALKGQHNKKNA-MAASTVANL-LNIRKAT 296
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
+ ++E + HR++ V + I V +++DSKATN+ AT L D V ++GG K
Sbjct: 297 IRESLEGFQGVEHRLEQVLK-INNVQYINDSKATNVNATFYAL-DSMSEPTVWIVGGVDK 354
Query: 305 FGYSGVLIWKTLVNNGL-SIPCFAVAN-------------------MKDAVNHARRMATN 344
L LVN + +I C V N M +AV A +++
Sbjct: 355 GNNYRDLY--PLVNEKVKAIICLGVDNAKLMSHFGNMVDIIVETPSMSEAVKIAYKVSER 412
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQE 372
GD ++LSP CASFD F N+E RG F+E
Sbjct: 413 GDNVLLSPACASFDLFENYEDRGRQFKE 440
>gi|393786143|ref|ZP_10374281.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides nordii
CL02T12C05]
gi|392660507|gb|EIY54119.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides nordii
CL02T12C05]
Length = 462
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 188/382 (49%), Gaps = 54/382 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 100 LKAQGTPIISEIEFAGRYT--DAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 157
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 158 SL--------ALQVAEGKHDYYVIELSSFQLD--NMYEFRANIAVLMNITPDHLDRYDHC 207
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P + L + +K H + A + GA V+
Sbjct: 208 MQNYIDAKFRITQNQTQDDAFVFWNDDPIIKRELEKHGLKAHLYPFAAVKEDGAIAYVE- 266
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 267 DNEVKITE------PIAFNMEQEKLALTGQHNLYNSLAAGISANLA---GITKEDIRKAL 317
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYS 308
+ HR++ V R + G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 318 SDFKGVEHRLEKVAR-VGGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYT 375
Query: 309 GV----------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVL 350
+ L++ L N L +P V MKDAV A ++A G+ ++L
Sbjct: 376 EIEDLVREKCSALVYLGLHNEKLHAFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 435
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CASFD F+++E RG F+E
Sbjct: 436 SPCCASFDLFKSYEDRGDQFKE 457
>gi|399002527|ref|ZP_10705213.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM18]
gi|398124967|gb|EJM14463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM18]
Length = 448
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/359 (30%), Positives = 168/359 (46%), Gaps = 62/359 (17%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVV------ 214
Query: 165 NQH--LNEAIKGH-------RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
N+H L+ + G N AF G++ + K +FE + + + +
Sbjct: 215 NRHDALSRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVREL 268
Query: 216 KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
KV G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DS
Sbjct: 269 KVRGAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVGYYNDS 325
Query: 276 KATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVL 311
KATN+ A + D+ G K V++ GG K G
Sbjct: 326 KATNVGAALAAIEGLGADIDG-KLVLIAGGDGKGAEFKDLRDPVAANCRAVILMGRDSDK 384
Query: 312 IWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
I + + G ++P V ++ +AV R +A GDA++LSP CASFD F+N+E RG F
Sbjct: 385 IGEAV---GDAVPLIRVGSLIEAVEQCRAIAEKGDAVLLSPACASFDMFKNYEDRGHQF 440
>gi|294142806|ref|YP_003558784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
violacea DSS12]
gi|293329275|dbj|BAJ04006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
violacea DSS12]
Length = 451
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 177/359 (49%), Gaps = 43/359 (11%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
FA + RS ++ +TG+NGKSTV T VG+M G+ VGGN+G P+ L
Sbjct: 102 FARAIKDRSPCVIGITGSNGKSTVTTLVGEMAKAAGLNYAVGGNIGIPV---------LD 152
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
+ + ++E+SS+Q+E + C + + LN++ DH++R+ ++ Y K L+
Sbjct: 153 LLQKPVDLYILELSSFQLETTHSLNCISAT-CLNISEDHMDRYSDLEAYRQAKLALYDQ- 210
Query: 154 VNTKLGLLPFGNQ--HLNEAIKGHRFNL-AWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
+K L + N+ + + F L + + GVK D + + E+ +
Sbjct: 211 --SKRALFNREDSLTQPNDPMNQNSFGLTSPVNDEWGVK-DGKIVHGTTEIAS------- 260
Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
L ++ ++G HN+ N +AA++ L G+D E + + HR ++V +I V
Sbjct: 261 -LQDVAIVGSHNHAN-LIAAMA-LAYHAGIDKEPMIQVAKNFTGLAHRCELV-ANIAAVA 316
Query: 271 WVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFG--------YSGVLIWKTLVNNG 320
+V+DSKATN+ AT L L H ++++GG K ++ V TL +G
Sbjct: 317 YVNDSKATNVGATVAALEGLGEHLGDIILIVGGDGKGADFTPLETVFNKVAHLITLGKDG 376
Query: 321 LSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
I +M DAV A +AT GD ++LSP CAS D ++NF RG F++LA
Sbjct: 377 DKIAALKEHSHKADSMADAVKQAAELATAGDIVLLSPACASLDMYKNFMARGDDFRQLA 435
>gi|157373549|ref|YP_001472149.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
sediminis HAW-EB3]
gi|157315923|gb|ABV35021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
sediminis HAW-EB3]
Length = 443
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 176/365 (48%), Gaps = 55/365 (15%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
FA V R ++ +TG+NGKSTV T V +M GI VGGN+G P+ L
Sbjct: 100 FARAVKERDACVIGITGSNGKSTVTTLVAEMAKAAGINYAVGGNIGIPV---------LD 150
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
+ ++ V+E+SS+Q+E + C + + LN++ DH++R+ ++ Y K L+S
Sbjct: 151 LLQSDIELYVLELSSFQLETTHSLNCISAT-CLNISEDHMDRYSDIEAYRQAKLRLYSQ- 208
Query: 154 VNTKLGLLPFGNQ--HLNEAIKGHRFNLA------WIGAFPGVKIDTEAKTASFEVPAVG 205
T+ L ++ + + + F L+ W GV E K G
Sbjct: 209 --TRFALFNREDELTKPKDPMNQNSFGLSLPDNDEW-----GV---CEGKIVH------G 252
Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ-IVHR 264
V + L ++ ++G HN+ N +AA++ L G++ A+ HR + +V+R
Sbjct: 253 SVEVISLQDVALVGSHNHAN-LIAAMA-LAYQAGIEKAAMVEVASSFTGLEHRFEMVVNR 310
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFGYSGVLI--------WK 314
+ GV +++DSKATN+ AT + + H +++ GG K L+
Sbjct: 311 N--GVAYINDSKATNVGATVAAIEGISEHLGDIILIAGGDGKGADFKPLVPVLKAVSHLI 368
Query: 315 TLVNNG-----LSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 369
TL +G LS V +M DAVN A ++A GD ++LSP CAS D ++NF RG
Sbjct: 369 TLGKDGDKIAALSDSSIRVDSMADAVNKAAQLAIAGDIVLLSPACASLDMYKNFMERGDD 428
Query: 370 FQELA 374
F+ LA
Sbjct: 429 FRRLA 433
>gi|85707764|ref|ZP_01038830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
NAP1]
gi|85689298|gb|EAQ29301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
NAP1]
Length = 460
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 168/356 (47%), Gaps = 53/356 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K++ +TGTNGKST V V +L GI + +GGN+G P+ L + V V
Sbjct: 110 KVVGITGTNGKSTTVALVHHILQMAGIPSLLGGNIGEPIMAQE----PLAPGEGGEGVYV 165
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ C V+ + N+TPDHL+R+ YA K LF L + F
Sbjct: 166 LELSSYQIDLTTSLDC-EVAALTNITPDHLDRYDGFAAYAAAKERLFKMQSPRNLAV--F 222
Query: 164 GNQHLNEAIKG-HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
G+ L E + +R + + G + A+ A + + Q + + G HN
Sbjct: 223 GS--LEEPVGAIYRRQIEFRG-------EGRAQAADLD-----ALRDRQANWPSLQGPHN 268
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N AVA V ++GV + I R PHRM+IV + +GV +++DSKATN +A
Sbjct: 269 LENVAVAVAIV--EELGVTEAQWSHAIPRFRGLPHRMEIVCEE-EGVLFINDSKATNTDA 325
Query: 283 TCTGLM-----DLKGHKCVILLGGQAKFGYSG--------VLIWKTLVNNGLSIPCFA-- 327
+ L + + ++GG AK G + + T+ G P FA
Sbjct: 326 SAPALAAYPRGEADRPRIHWIVGGLAKEDGLGKCAEHLGDIAVAYTVGEAG---PRFAEL 382
Query: 328 ----------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ +AV A+ A GD ++ SP CASFD+FR++E RG F++L
Sbjct: 383 LEGEVPKVERCELVSEAVRRAKDAAVAGDVVLFSPACASFDQFRDYEKRGEHFRQL 438
>gi|87199153|ref|YP_496410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
aromaticivorans DSM 12444]
gi|118595671|sp|Q2G997.1|MURD_NOVAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|87134834|gb|ABD25576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
aromaticivorans DSM 12444]
Length = 443
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 164/352 (46%), Gaps = 58/352 (16%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++ +TGTNGKST V + G+ A +GGN+G P I P+ V V
Sbjct: 110 RVVGITGTNGKSTTTMLVHHICAAAGLPARLGGNIGLP--------ILGQEPLPEGGVYV 161
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ C V+ ++NL+PDHL+R+ YA +K LF+ + +
Sbjct: 162 LELSSYQIDLTQSLAC-DVAALINLSPDHLDRYDGFAGYAASKARLFAMQRADQHAVFGC 220
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM----KVMG 219
G++H ++I EA +A+ + V VV LH + G
Sbjct: 221 GDEHT-------------------LEIAREA-SATHDTGFVHVVQPSALHGQLEWPSLQG 260
Query: 220 RHNYHNAAVAALSVLGLDIGVDV--EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
HN NAA+A L I D+ AL S + + PHRM+ V + GV +V+DSKA
Sbjct: 261 PHNLQNAAIAVEIARQLGIAEDIWRSALASFVGL----PHRMERV-AEANGVLFVNDSKA 315
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKFG--------YSGVLIWKTLVNNGLSI-----P 324
TN +T L + +LGG K + V+ T+ G P
Sbjct: 316 TNPASTAPALGAYP--RIHWILGGLPKSDNLDECAPYFDHVVAAYTIGEAGPRFAEILEP 373
Query: 325 CFAVANMK---DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
V + DAV A A GD ++LSP CASFD+FR+FE RG F+++
Sbjct: 374 VMPVTRSEMLCDAVRQAMEAAQPGDVVMLSPACASFDQFRDFEARGDSFRQI 425
>gi|30316124|sp|Q9F1N2.1|MURD_SHEVD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|11761333|dbj|BAB19200.1| MurD [Shewanella violacea]
Length = 449
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 177/359 (49%), Gaps = 43/359 (11%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
FA + RS ++ +TG+NGKSTV T VG+M G+ VGGN+G P+ L
Sbjct: 100 FARAIKDRSPCVIGITGSNGKSTVTTLVGEMAKAAGLNYAVGGNIGIPV---------LD 150
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
+ + ++E+SS+Q+E + C + + LN++ DH++R+ ++ Y K L+
Sbjct: 151 LLQKPVDLYILELSSFQLETTHSLNCISAT-CLNISEDHMDRYSDLEAYRQAKLALYDQ- 208
Query: 154 VNTKLGLLPFGNQ--HLNEAIKGHRFNL-AWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
+K L + N+ + + F L + + GVK D + + E+ +
Sbjct: 209 --SKRALFNREDSLTQPNDPMNQNSFGLTSPVNDEWGVK-DGKIVHGTTEIAS------- 258
Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
L ++ ++G HN+ N +AA++ L G+D E + + HR ++V +I V
Sbjct: 259 -LQDVAIVGSHNHAN-LIAAMA-LAYHAGIDKEPMIQVAKNFTGLAHRCELV-ANIAAVA 314
Query: 271 WVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFG--------YSGVLIWKTLVNNG 320
+V+DSKATN+ AT L L H ++++GG K ++ V TL +G
Sbjct: 315 YVNDSKATNVGATVAALEGLGEHLGDIILIVGGDGKGADFTPLETVFNKVAHLITLGKDG 374
Query: 321 LSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
I +M DAV A +AT GD ++LSP CAS D ++NF RG F++LA
Sbjct: 375 DKIAALKEHSHKADSMADAVKQAAELATAGDIVLLSPACASLDMYKNFMARGDDFRQLA 433
>gi|398341290|ref|ZP_10525993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
kirschneri serovar Bim str. 1051]
Length = 463
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 180/392 (45%), Gaps = 73/392 (18%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE+D KI+ +TGT+GKST + + +L + GGNLG P +
Sbjct: 89 VISEIDLGRYFFKG--KIIGITGTDGKSTTTSLIAHLLKQGFPDLKEGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL DHLERHKTM+NY K
Sbjct: 147 ESISL---------AVLELSSYQLEDSSPLHL-NVSVFLNLASDHLERHKTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK--IDTEA---KTASF 199
+ + + N+ L+ ++ + E I ++ L G PG +D + KT+ F
Sbjct: 197 KI-ADLSNSNHSLIV--SEKIKERILNSTSYQCKLLSFGKTPGSNAFLDESSLKIKTSKF 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ +S+ L G HN N A + L+ +IG E++ + I + R PHR
Sbjct: 254 ----IYDISKFYLP-----GSHNRENLAASILA--AEEIGEKPESIQTRIPLFRGLPHRF 302
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK---------FGYSG 309
QI + G+++++DSK+TNL + G+ K + ++LGG+ K F G
Sbjct: 303 QIAGEKL-GISFINDSKSTNLHSMLAGMATWKNLDQTCLILGGRPKQEDPKPLYDFLIKG 361
Query: 310 V----------LIWKTLVNNGLSIPCFAVANMKDAVNHARR----MATNGD--------- 346
+ +W+ + N + V N+ D ++ A N D
Sbjct: 362 IGCVVLFGEARSVWENGIRNIIGEKLHCVENLNDTFEIFKKGYILTAANSDKDSIFRLSH 421
Query: 347 -----AIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ V SP CASFD+++NFE RG F L
Sbjct: 422 GISISSFVFSPACASFDQYKNFEERGNHFLSL 453
>gi|395497067|ref|ZP_10428646.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. PAMC 25886]
Length = 448
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 170/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLNDNVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGLPCWTFGLNKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ S + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLSALRSFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D++G K V++ GG K G LI
Sbjct: 329 NVGAALAAIEGLGADIQG-KVVLIAGGDGKGADFKDLKGPVAAHCRAVVLMGRDSGLIAD 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L G ++P ++ DA+ +R +A GD ++LSP CASFD F+N+E RG +F
Sbjct: 388 AL---GDAVPQVRTQSLDDAIAQSRSLAQPGDVVLLSPACASFDMFKNYEERGQLF 440
>gi|212556524|gb|ACJ28978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid adding enzyme) [Shewanella
piezotolerans WP3]
Length = 422
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 184/372 (49%), Gaps = 56/372 (15%)
Query: 25 GKRVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ A+ I S +++ +TG+NGKSTV T VG+M G+ +GGN+G P+
Sbjct: 74 GIEVIGDVELFARAIANSPARVIGITGSNGKSTVTTLVGEMAAAAGLSYTLGGNIGIPVL 133
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ + PK ++ V+E+SS+Q+E + C + LN++ DH++R+ +++Y
Sbjct: 134 DLLLN--------PK-ELYVLELSSFQLETTHSLNC-IAATCLNISEDHMDRYNDLESYR 183
Query: 144 LTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNL------AWIGAFPGVKIDTEA 194
K +L+ ++ + LL N +N+ + F L AW GA +
Sbjct: 184 QAKLNLYDQSKSVLFNREDLLTLPNSPMNQ----NSFGLDAPEVDAWGGAEGNI-----V 234
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ +S +P +S++ L +G HN+ N A +DIG E L +
Sbjct: 235 RGSSVIMP----ISEVAL-----VGSHNHANLIAAMALASSVDIG--REYLVEVAKQFTG 283
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAK---FGYSG 309
HR ++V DI GVT+V+DSKATN+ AT + L H + +++ GG K F
Sbjct: 284 LTHRCEVVA-DIAGVTYVNDSKATNVGATVAAIEGLSEHLGELILIAGGDGKGADFTALA 342
Query: 310 VLIWK-----TLVNNGLSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
+ + TL +G I +V M +AV A ++T GD ++LSP CAS D
Sbjct: 343 TALERVSSVITLGKDGDKIAALKEGSQSVKTMAEAVALANEISTAGDIVILSPACASLDM 402
Query: 360 FRNFEHRGMVFQ 371
+ NF RG F+
Sbjct: 403 YPNFMARGDDFR 414
>gi|386080668|ref|YP_005994193.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
ananatis PA13]
gi|354989849|gb|AER33973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
ananatis PA13]
Length = 438
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 173/370 (46%), Gaps = 82/370 (22%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---------ALSLLKAPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGADARCVSFGIDIGDYHLNK-----QQGSIWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A +GL + AL + + PHR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGL----PHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNG 320
H+ +GV W++DSKATN+ +T L L+ + + +LLGG K +S + + L +
Sbjct: 308 HQS-RGVRWINDSKATNVGSTEAALKGLQVNGTLWLLLGGDGKSADFSPLATY--LQGDR 364
Query: 321 LSIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
+ + CF ++ A+ R D ++LSP CAS D+FRNFE
Sbjct: 365 IRLFCFGRDGDALAALRPDVAVRTDTLQQAMEQIARQVQPDDMVLLSPACASLDQFRNFE 424
Query: 365 HRGMVFQELA 374
RG VF +LA
Sbjct: 425 QRGDVFAQLA 434
>gi|421129128|ref|ZP_15589337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. 2008720114]
gi|410359660|gb|EKP06730.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. 2008720114]
Length = 463
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 180/392 (45%), Gaps = 73/392 (18%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE+D KI+ +TGT+GKST + + +L + GGNLG P +
Sbjct: 89 VISEIDLGRYFFKG--KIIGITGTDGKSTTTSLIAHLLKQGFPDLKEGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL DHLERHKTM+NY K
Sbjct: 147 ESISL---------AVLELSSYQLEDSSPLHL-NVSVFLNLASDHLERHKTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK--IDTEA---KTASF 199
+ + + N+ L+ F + + E I ++ L G PG +D + KT+ F
Sbjct: 197 KI-ADLSNSNHSLIVF--EKIKERILNSTSYQCKLLSFGKTPGSNAFLDESSLKIKTSKF 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ +S+ L G HN N A + L+ +IG E++ + I + R PHR
Sbjct: 254 ----IYDISKFYLP-----GSHNRENLAASILA--AEEIGEKPESIQTRIPLFRGLPHRF 302
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK---------FGYSG 309
QI + G+++++DSK+TNL + G+ K + ++LGG+ K F G
Sbjct: 303 QIAGEKL-GISFINDSKSTNLHSMLAGMATWKNLDQTCLILGGRPKQEDPKPLYDFLIKG 361
Query: 310 V----------LIWKTLVNNGLSIPCFAVANMKDAVNHARR--MATNGD----------- 346
+ +W+ + N + V N+ D ++ + T D
Sbjct: 362 IGCVVLFGEARSVWENGIRNIIGEKLHCVENLNDTFEIFKKGYILTAADSGKDSIFRLSH 421
Query: 347 -----AIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ V SP CASFD+++NFE RG F L
Sbjct: 422 GISISSFVFSPACASFDQYKNFEERGNHFLSL 453
>gi|224368382|ref|YP_002602545.1| protein MurD [Desulfobacterium autotrophicum HRM2]
gi|223691098|gb|ACN14381.1| MurD [Desulfobacterium autotrophicum HRM2]
Length = 458
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 172/369 (46%), Gaps = 48/369 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V ELD + R ++A+TGTNGK+TV T V +ML G+ F GGN+G PL E
Sbjct: 104 VTGELDLFFYFLER--PLVAITGTNGKTTVTTLVSEMLKRSGLSVFTGGNIGTPLVE--- 158
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
S V V EVSS+Q++ F P V+V+LN+ DH++R+ YA +K
Sbjct: 159 ----FLESGQTEDVVVAEVSSFQLDAAT-MFAPRVAVLLNIAEDHMDRYTAFSAYADSKW 213
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
L + + ++ NQ L R A + F + +A A+ + ++ +
Sbjct: 214 ALLGNQSENDIAVV---NQTLPIDSDRKRTIKAVLLTFG----EDKACNAAIDTRSIAIS 266
Query: 208 SQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+Q L L ++ G HN N +AA ++ L G + ++ HR + V
Sbjct: 267 TQDQKFVLDLSVTRLRGAHNREN--IAAAALAALLAGACQAGIQGALDDFSGLAHRTEYV 324
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNN--- 319
I GV + +DSK TN A L + +++LGG++K L+ L+N
Sbjct: 325 TA-INGVDYYNDSKGTNPHAVEGALRGF--DRVILILGGRSKGTDFSCLV--PLINQRVK 379
Query: 320 ----------------GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
G ++ +M D V+ A R+AT+GD ++LSPGC+SFD + N+
Sbjct: 380 TVILMGEAAREIKAVLGSTVEILEAGSMADVVSVANRIATHGDTVLLSPGCSSFDMYDNY 439
Query: 364 EHRGMVFQE 372
RG F++
Sbjct: 440 AQRGRDFKD 448
>gi|226226832|ref|YP_002760938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemmatimonas
aurantiaca T-27]
gi|226090023|dbj|BAH38468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemmatimonas
aurantiaca T-27]
Length = 464
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 187/381 (49%), Gaps = 43/381 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G V+ E++ A ++ P +++ +AVTGTNGK+T +G +L LG++A GN+G P+
Sbjct: 94 EAGVPVVGEVEIALRLQP-ALRYIAVTGTNGKTTTTALIGHLLRALGVDAADVGNIGTPV 152
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S +AL + P + A +E+SS+Q+ + P Y P V V+ L+PDHL+R+ ++
Sbjct: 153 S-----ALALQETPPAW--AALEMSSFQLHDTPGIY--PDVGVLTTLSPDHLDRYTSVAE 203
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K LF + V+ + + + E ++G W +D S +
Sbjct: 204 YYGDKQRLFLNAVSQSRWVATADSDAVRELVQGIEGQWYWFSTKQTDGMDASYHHESGML 263
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD----IGVDVEALNSTIEILRTPPH 257
+G + + + G HN N A LSV+ D G AL + R PPH
Sbjct: 264 HVLG-APLMARDRVPLAGDHNVANVLAAVLSVMVADASFRTGTARAALADAVATFRAPPH 322
Query: 258 RMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGVL---- 311
R++ +VHR V W++DSKATN+ +T L + V+LLGG+ K Y+ +L
Sbjct: 323 RLETVVHR--HDVVWINDSKATNVASTLVALAGMT-RPTVVLLGGRHKGEPYTALLPELR 379
Query: 312 -IWKTLVNNG---------LSIPCFAVA--------NMKDAVNHARRMATNGDAIVLSPG 353
I K ++ G L+ P V + + A A+ GDA++LSP
Sbjct: 380 RIAKVVIAYGEAADTIVADLTAPLAGVVPVVQVHERSFAAVMTRAHAEASAGDAVLLSPA 439
Query: 354 CASFDEFRNFEHRGMVFQELA 374
C+S+D F N+E RG F LA
Sbjct: 440 CSSYDMFNNYEERGREFARLA 460
>gi|315225589|ref|ZP_07867398.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
ochracea F0287]
gi|420159278|ref|ZP_14666085.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
ochracea str. Holt 25]
gi|314944406|gb|EFS96446.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
ochracea F0287]
gi|394762576|gb|EJF44795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
ochracea str. Holt 25]
Length = 444
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 187/385 (48%), Gaps = 48/385 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + + G V+SE++FA+Q I + +TG+NGK+T + G++
Sbjct: 75 KAPIIKKVHEKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTYHIFKEAGLQVG 132
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+G +E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL
Sbjct: 133 LGGNIGYSFAEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHL 183
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R+ +NY +K + + + ++ + + + H I I+
Sbjct: 184 DRYDYKFENYINSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEK 239
Query: 193 EAKTASF------EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
E +F + +++ + + + G+HN N A SV + + +L
Sbjct: 240 ELPQGAFLKDNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLR 297
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
+++ + PHR++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K
Sbjct: 298 ESLKGFKGAPHRLEEV-KVVDGVTYVNDSKATNVNSVFYALDTIKT-PIVWIVGGQDKGN 355
Query: 307 -YSGVLIWKTLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGD 346
Y+ +L + + +I C V N M +AV A+ A GD
Sbjct: 356 DYNSLLPY--VHEKVRAIVCLGVDNTPIIQSFYNTIGTLVETRSMDEAVKLAQGFAQEGD 413
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQ 371
++LSP CASFD F+N+E RG +F+
Sbjct: 414 TVLLSPACASFDLFKNYEERGDLFK 438
>gi|145637113|ref|ZP_01792776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittHH]
gi|145269767|gb|EDK09707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
influenzae PittHH]
Length = 437
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 181/404 (44%), Gaps = 66/404 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTLEIQTALKAGVEVIGDIELFCHAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMNILAAIA 278
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ I +D ++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 279 LAQAIGINLD--SIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVAN 330
K +LLGG K FG G L+ K S +
Sbjct: 336 IEGKLHLLLGGDGKGADFSELAELINQPHIICYCFGRDGALLAK------FSSQSYLFET 389
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
MK A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 390 MKQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>gi|327399667|ref|YP_004340536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
DSM 10411]
gi|327182296|gb|AEA34477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
DSM 10411]
Length = 435
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 179/368 (48%), Gaps = 48/368 (13%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+++SEL+ + KI+A+TGTNGKST V V ++L GN G PLSEA
Sbjct: 79 KLISELELGYRYAKG--KIIAITGTNGKSTTVALVERILKGASKRVIACGNYGLPLSEAI 136
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + VVE SSYQ+E +K F P ++ +LN+ DHL H +M NY K
Sbjct: 137 YENA---------EYYVVEASSYQLEFIDK-FKPNIAAILNIAFDHLSWHGSMDNYIEAK 186
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
+F + + F + I + NL + K D A FE V V
Sbjct: 187 KKIFKNQLEDDF----FIKNDSDSYIFDGKANLFLVS-----KRDRNA-DCFFEKNGVIV 236
Query: 207 --VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
L++ + G + N A AAL +GL G++ + + + + HR++ V
Sbjct: 237 NRPEYLRIDKTGLFGSKVFENIAFAAL--IGLLCGIEKKTIKEVVGTMSNLEHRIEFVD- 293
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAK-FGYS-----------GVL 311
+I GV + +DSKATNL+A + +G K VI+LGG+ K YS V+
Sbjct: 294 EIDGVKFYNDSKATNLDAVEAAINSFDEGIKIVIILGGKHKGESYSRLLPLLEKRARAVV 353
Query: 312 IW----KTLVN--NG-LSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
++ K ++N +G L +P AV N+ AV A +A+ D ++ SPG +S + ++NFE
Sbjct: 354 VYGEDRKVILNELDGFLPVPLPAV-NIWGAVRAAFEVASKDDVVLFSPGGSSCEPYKNFE 412
Query: 365 HRGMVFQE 372
RG F++
Sbjct: 413 ERGEAFKK 420
>gi|256003375|ref|ZP_05428366.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum DSM 2360]
gi|255992665|gb|EEU02756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum DSM 2360]
Length = 434
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 179/397 (45%), Gaps = 75/397 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V SE++ ++ P +I AVTG++GK+T T + ML G + ++GGN+G PL
Sbjct: 67 EEGTEVTSEMEVFFELCP--AEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL 124
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ K +V V+E+SS+Q+ K P V+VV N++P+HL+ HK+M+ Y
Sbjct: 125 ------LSKIEEIKDTDKV-VLELSSFQLHTMTK--SPNVAVVTNVSPNHLDVHKSMEEY 175
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNE---AIKGH-----RFNLAWIGA--------FP 186
K ++F + +L F N E KG R + GA F
Sbjct: 176 VSAKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFR 235
Query: 187 GVKIDTE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ +TE AK + +P V HN N A +V+ VD + +
Sbjct: 236 DGETETEIAKASDIVIPGV----------------HNVENFLAATAAVIDC---VDRDVI 276
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK- 304
HR+++V R+I GV + +DS A++ T GL K K +++ GG K
Sbjct: 277 RKVATTFTGVEHRIELV-REINGVKFYNDSIASSPTRTIAGLNSFK-DKVILIAGGYDKK 334
Query: 305 -------------------FGYSGVLIWKTLVNN------GLSIPCFAVANMKDAVNHAR 339
G + I K L + G IP ++++AV A
Sbjct: 335 IPYDALGPVIAEKVKCLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEEAVKVAY 394
Query: 340 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
R A+ GD ++LSP ASFD F+NFE RG F+E+ S
Sbjct: 395 RFASVGDVVILSPASASFDMFKNFEERGNRFKEIVNS 431
>gi|127514383|ref|YP_001095580.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
loihica PV-4]
gi|126639678|gb|ABO25321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
PV-4]
Length = 443
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 173/357 (48%), Gaps = 45/357 (12%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
FA + R ++ +TG+NGKSTV T VG+M G++ VGGN+G P+ L
Sbjct: 100 FARALADRPACVIGITGSNGKSTVTTLVGEMAAKAGLKVAVGGNIGVPV---------LD 150
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
++ V+E+SS+Q+E + C + + LN++ DH++R+ +++Y K L+
Sbjct: 151 LLDGDHELFVLELSSFQLETTSSLNCISAT-CLNISEDHMDRYSDLESYRQAKLRLYDQ- 208
Query: 154 VNTKLGLLPFGNQHL----NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ 209
TKL + F L NE + + F L + P + + + V G
Sbjct: 209 --TKLAI--FNRDDLLTRPNEPMNQNSFGL----SLP----EGDEWGVNHGVLVHGTTEY 256
Query: 210 LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGV 269
+ + ++G HN N VA L GVD A+ + + HR ++V + QGV
Sbjct: 257 VAGAQVSLVGSHNQANLLVAM--ALADSAGVDKAAMVEVAKQFKGLAHRCELVGKH-QGV 313
Query: 270 TWVDDSKATNLEATCTGLMDLKGHKCVILL--GGQAKFG-YS-------GVLIWKTLVNN 319
++V+DSKATN+ AT L L H+ I+L GG K +S GV TL +
Sbjct: 314 SYVNDSKATNVGATIAALQGLSDHEGQIILIAGGDGKGADFSTLRGALLGVGQVITLGKD 373
Query: 320 GLSIP-----CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
G I V +M++AV A ++A GD ++LSP CAS D + NF RG F+
Sbjct: 374 GDRIAEQFDGAIRVESMQEAVAQAAQLAKPGDLVLLSPACASLDMYANFMARGDDFR 430
>gi|260913001|ref|ZP_05919486.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
dagmatis ATCC 43325]
gi|260632991|gb|EEX51157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
dagmatis ATCC 43325]
Length = 434
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 179/389 (46%), Gaps = 62/389 (15%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
+K + L +G +V+ +++ + S I+A+TG+NGKSTV T V +M G++
Sbjct: 78 IKTPEIQTALSAGVKVIGDIELFCR--EASKPIIAITGSNGKSTVTTLVYEMAKASGLKV 135
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
+GGN+G P AL + + + V+E+SS+Q+E T + VLN+T DH
Sbjct: 136 GMGGNIGIP---------ALSLLEQNYDLYVLELSSFQLETTYS-LKATSATVLNVTEDH 185
Query: 133 LERHKTMKNYALTKCHLF----SHMVNTKLGLLPFGNQHLNEAIK-GHRFNLAWIGAFPG 187
++R+ +++Y K ++ + +VNT+ L + L A+ G + W
Sbjct: 186 MDRYIDLEDYRQAKLRIYHNAKTAIVNTEDPLTTIDS--LKSAVSFGEENSDYW------ 237
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
+ TE F + L +K++GRHNY N V A L V +E + +
Sbjct: 238 --LKTENGKQYFMAKNEMI---LPCDEIKLVGRHNYMN--VLAAIALAQAANVSLEGIRT 290
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAK- 304
+ HR Q+ H GV W++DSKATN+ +T L L+ GH +LLGG K
Sbjct: 291 ALREFSGLDHRFQLAHF-ANGVYWINDSKATNVGSTVAALTGLQVAGH-LHLLLGGDGKE 348
Query: 305 -------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 345
FG G + K LS M+ A+N R G
Sbjct: 349 ADFSELSTLIQQPHIYCYCFGKDGAQLAK------LSQQSQLFDTMEQAINALRPNLKEG 402
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQELA 374
D ++LSP CAS D+F +FE RG F LA
Sbjct: 403 DMVLLSPACASLDQFTSFEQRGDEFTRLA 431
>gi|345017940|ref|YP_004820293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344033283|gb|AEM79009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 454
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 188/374 (50%), Gaps = 48/374 (12%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
V+ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 94 EVLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNAGRKVYVAGNIGYPLIYA- 150
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL RHKT ++Y K
Sbjct: 151 ----VMEATEGDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLNRHKTFESYRDIK 203
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEV 201
+F + + +L F ++ + N A FP + + K S +
Sbjct: 204 GRIFENQRGDEYTVLNF-----DDPVTWSLKNKAKCRVFPFSRKSSLENGAYVKDGSIYI 258
Query: 202 PAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
G + + + + + G HN N A+AA SV L G+ + +T++ + HR++
Sbjct: 259 SVNGNAKKIIDIEEIYIPGEHNLEN-ALAASSVAYLS-GISANVIANTLKTFKGVEHRIE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------FGYSG--- 309
V +I GV + +DSK TN +A+ + LK V++ GG K ++G
Sbjct: 317 FVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDKGSEFDEFVKAFNGKVK 374
Query: 310 --VLIWKTL-----VNNGLSIP----CFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+LI +T S P FA +++AV A A GD+++LSP CAS+D
Sbjct: 375 KLILIGQTAKKIRDTARKYSYPEDDILFA-GTLEEAVKKAYESAKEGDSVLLSPACASWD 433
Query: 359 EFRNFEHRGMVFQE 372
FRNFE RG +F++
Sbjct: 434 MFRNFEERGRIFKK 447
>gi|392540297|ref|ZP_10287434.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
piscicida JCM 20779]
Length = 440
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 180/379 (47%), Gaps = 54/379 (14%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A + G V+ +++ A++ R ++AVTG+NGKSTVVT ++L G++ +GGN
Sbjct: 88 VAAAIAEGVEVIGDIELFARLNTR--PVIAVTGSNGKSTVVTLATEVLKAAGLKVGLGGN 145
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G + L + V V+E+SS+Q+E + C + +++LN+T DH++R+
Sbjct: 146 IGTSV---------LSLLEQPHDVYVLELSSFQLETTHSLACLS-AMILNITEDHMDRYP 195
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI-GAFPGVKIDTEAKT 196
+ Y K ++ H+ + H A G +++ G F + ID E
Sbjct: 196 DFQAYIEAKQRIYQHVEHIVFN----AEDHYTFAQHGQGSSVSLTEGDFHLMTIDGEPHF 251
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A + P L + + ++GRHN NA + + + +A S P
Sbjct: 252 AHKQTPL------LPVKTLAMVGRHNQFNALAVLALLAPMQL--PKQAFASAFASFTGLP 303
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILL-GGQAK---------- 304
HR Q+V D+ GV + +DSKATN+ +T + L G K +IL+ GG AK
Sbjct: 304 HRCQLV-ADVAGVRYFNDSKATNVGSTVAAIDSLASGRKNIILIVGGDAKGADLSPLKTP 362
Query: 305 ----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
FG G L N+ V N+++AV A+ +ATNGD ++L+P C
Sbjct: 363 LTTHCKALFCFGQDGAQFMPLLRNS------HQVNNLEEAVLAAKTIATNGDIVLLAPAC 416
Query: 355 ASFDEFRNFEHRGMVFQEL 373
AS D + N+ RG F L
Sbjct: 417 ASIDMYPNYMARGDEFVRL 435
>gi|168211219|ref|ZP_02636844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens B str. ATCC 3626]
gi|182626019|ref|ZP_02953782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens D str. JGS1721]
gi|170710774|gb|EDT22956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens B str. ATCC 3626]
gi|177908726|gb|EDT71237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
perfringens D str. JGS1721]
Length = 458
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 106/360 (29%), Positives = 169/360 (46%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGH--RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
N+ +L++ KG RF+ D + EV + ++ +
Sbjct: 229 ENEITKNLDKEAKGKVVRFSSKKTAGEDAYYKDGKLYVHGKEV--------CKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGVTKEKIKAAFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ V+ A+ +A NGD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVSIAKSIAENGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>gi|385778522|ref|YP_005687687.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
thermocellum DSM 1313]
gi|419723649|ref|ZP_14250764.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
thermocellum AD2]
gi|419724526|ref|ZP_14251588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
thermocellum YS]
gi|316940202|gb|ADU74236.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum DSM 1313]
gi|380772073|gb|EIC05931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
thermocellum YS]
gi|380780331|gb|EIC10014.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
thermocellum AD2]
Length = 466
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 117/397 (29%), Positives = 183/397 (46%), Gaps = 75/397 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V SE++ ++ P +I AVTG++GK+T T + ML G + ++GGN+G PL
Sbjct: 99 EEGTEVTSEMEVFFELCP--AEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ K +V V+E+SS+Q+ K P V+VV N++P+HL+ HK+M+ Y
Sbjct: 157 ------LSKIEEIKDTDKV-VLELSSFQLHTMTK--SPNVAVVTNVSPNHLDVHKSMEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNE---AIKGH-----RFNLAWIGA--------FP 186
K ++F + +L F N E KG R + GA F
Sbjct: 208 VSAKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFR 267
Query: 187 GVKIDTE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ +TE AK + +P V HN+ N+ A A + + D+ V
Sbjct: 268 DGETETEIAKASDIVIPGV--------HNV-----ENFLAATAAVIDCVDRDVIRKVATT 314
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK- 304
+ +E HR+++V R+I GV + +DS A++ T GL K K +++ GG K
Sbjct: 315 FTGVE------HRIELV-REINGVKFYNDSIASSPTRTIAGLNSFK-DKVILIAGGYDKK 366
Query: 305 -------------------FGYSGVLIWKTLVNN------GLSIPCFAVANMKDAVNHAR 339
G + I K L + G IP ++++AV A
Sbjct: 367 IPYDALGPVIAEKVKCLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEEAVKVAY 426
Query: 340 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
R A+ GD ++LSP ASFD F+NFE RG F+E+ S
Sbjct: 427 RFASVGDVVILSPASASFDMFKNFEERGNRFKEIVNS 463
>gi|423316134|ref|ZP_17294039.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bergeyella
zoohelcum ATCC 43767]
gi|405584407|gb|EKB58314.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bergeyella
zoohelcum ATCC 43767]
Length = 451
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 192/382 (50%), Gaps = 41/382 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA L + G R+ SE++FAA+ KI+A+TG+NGK+T + + +L + +
Sbjct: 84 KAGILQKIQAKGIRLSSEIEFAAEFT--DAKIIAITGSNGKTTTTSLIYHILKNAELHVG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDH 132
+GGN+G ++ + + V+EVSS+Q+ +I N F P ++++LNL+PDH
Sbjct: 142 LGGNIGTSFAKQV--------ADENYDYFVLEVSSFQLDDIQN--FQPYIALLLNLSPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+++ ++YAL K + + N + + ++ +E +K + K+D
Sbjct: 192 LDQYNYNYEDYALAKLRITENQKNHQFFIYNHEDEMTHELLKKIEVKAQTLPFSLNEKLD 251
Query: 192 TEAKTASFEVPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
E A+ + V + + ++++ + ++G+HN N + A S++G + + E L + +
Sbjct: 252 -EGAYATVDKIFVKLEKEFSMKINELPLVGKHNVAN--ILAASMVGKLLHISDENLQNAL 308
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG 309
+ HR+++ +I GV +++DSKATN+ A L + V + GG K G
Sbjct: 309 MTFQAVEHRLELF-AEIDGVKYINDSKATNVNAAYYALESMTS-PTVWIAGGVDK-GNDY 365
Query: 310 VLIWKTLVNNGLSIPC-------------------FAVANMKDAVNHARRMATNGDAIVL 350
I + ++ C ++ + +++ V A+ +A NGD ++L
Sbjct: 366 TEIEDLVKEKVKAVICLGKDNEKIIEFFQDKMKLIYSTSTLEECVKIAKSVAQNGDTVLL 425
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CASFD F N+E RG F++
Sbjct: 426 SPCCASFDLFENYEDRGEKFKK 447
>gi|125973556|ref|YP_001037466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
thermocellum ATCC 27405]
gi|158513249|sp|A3DE94.1|MURD_CLOTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|125713781|gb|ABN52273.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
thermocellum ATCC 27405]
Length = 466
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 179/397 (45%), Gaps = 75/397 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V SE++ ++ P +I AVTG++GK+T T + ML G + ++GGN+G PL
Sbjct: 99 EEGTEVTSEMEVFFELCP--AEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ K +V V+E+SS+Q+ K P V+VV N++P+HL+ HK+M+ Y
Sbjct: 157 ------LSKIEEIKDTDKV-VLELSSFQLHTMTK--SPNVAVVTNVSPNHLDVHKSMEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNE---AIKGH-----RFNLAWIGA--------FP 186
K ++F + +L F N E KG R + GA F
Sbjct: 208 VSAKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFR 267
Query: 187 GVKIDTE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ +TE AK + +P V HN N A +V+ VD + +
Sbjct: 268 DGETETEIAKASDIVIPGV----------------HNVENFLAATAAVIDC---VDRDVI 308
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK- 304
HR+++V R+I GV + +DS A++ T GL K K +++ GG K
Sbjct: 309 RKVATTFTGVEHRIELV-REINGVKFYNDSIASSPTRTIAGLNSFK-DKVILIAGGYDKK 366
Query: 305 -------------------FGYSGVLIWKTLVNN------GLSIPCFAVANMKDAVNHAR 339
G + I K L + G IP ++++AV A
Sbjct: 367 IPYDALGPVIAEKVKCLVLIGQTAPKIEKVLRDETERSGKGSDIPIKKCTSLEEAVKVAY 426
Query: 340 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
R A+ GD ++LSP ASFD F+NFE RG F+E+ S
Sbjct: 427 RFASVGDVVILSPASASFDMFKNFEERGNRFKEIVNS 463
>gi|218258175|ref|ZP_03474577.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
DSM 18315]
gi|218225698|gb|EEC98348.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
DSM 18315]
Length = 453
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 186/382 (48%), Gaps = 42/382 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 84 KAPIIKKLKEKGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTMLTYHILRQAGVDVG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 142 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----- 186
L+R+ M+NY K + + + + + I R A + F
Sbjct: 192 LDRYNYEMQNYVDAKFRILQNQTAEDAFIFWNDDPIIAREI-AKRHPEATLYPFAETHEA 250
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK TE K E + L + + G HN +N+ + ++ +DI E L
Sbjct: 251 GVKGYTEDKKIRIETSNGTFTMEQDL--LALSGTHNLYNSLASGIASKLVDIHD--ENLR 306
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
+++ HR++ V R ++GV +++DSKATN+ + L + +IL G
Sbjct: 307 ASLSDFTGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALQSMTTPLVLILGGTDKGND 365
Query: 307 YSGV----------LIWKTLVNNGL------SIPCFAVA-NMKDAVNHARRMATNGDAIV 349
YS + LI+ + N L +P A +M++AV+ A ++A GD ++
Sbjct: 366 YSEIEELVKKKVHALIFLGVDNTKLHAFFDGKVPVIEDARSMEEAVSKAYKLAEKGDTVL 425
Query: 350 LSPGCASFDEFRNFEHRGMVFQ 371
LSP CASFD F+++E RG F+
Sbjct: 426 LSPCCASFDLFKSYEDRGDQFK 447
>gi|352095857|ref|ZP_08956804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
WH 8016]
gi|351677213|gb|EHA60362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
WH 8016]
Length = 466
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 181/385 (47%), Gaps = 46/385 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G V E+ A Q + R + VTGTNGK+TV + +LN G+ A + GN
Sbjct: 86 LMQLRDHGVTVRGEMAVAWQAL-RHCPWIGVTGTNGKTTVTHLLHHVLNQAGLHAPMAGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ +E C+ +KP + V+E+SSYQ+E N+ PT+ + LTPDHLERH
Sbjct: 145 VGHSAAELGLQCMDPSQTKPDW--IVMEMSSYQIESANEVR-PTIGIWTTLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
+M Y K L +K +L + L ++ + H + W+ + + + E
Sbjct: 202 SMDAYRDIKQGLLQ---RSKHAVLNADDTDL-KSRQAHWPDAQWVSS---AQTNHEPFNL 254
Query: 198 SFEVPAVGVVSQLQ-----LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
V G V + + + + G HN N + ++ L G++ +A+ +
Sbjct: 255 ELWVNPEGFVCNKKGALFPANALAMPGEHNRQNMLL--VTAAALQAGLEPQAIERGLRSF 312
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGVL 311
PHR++ + + G+ +DSKATN +A L + G ++L GG +K G SG L
Sbjct: 313 PGVPHRLENL-GSLHGMNVFNDSKATNYDAAAVALQAVPG-PIILLAGGLSKQGDASGWL 370
Query: 312 IWKTLVNNGLSIPCFAV---------------------ANMKDAVNHARRMATNGDA--I 348
+ L + SI F + M DAV A NG+A +
Sbjct: 371 --QLLQDKVCSIALFGSDRDVLSGLIRDFGYTGNVTSHSTMTDAVTAAVENGKNGNAASL 428
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+LSP CASFD++++FE RG F+E+
Sbjct: 429 LLSPACASFDQYKDFEARGNHFREM 453
>gi|163751822|ref|ZP_02159038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
benthica KT99]
gi|161328307|gb|EDP99468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
benthica KT99]
Length = 449
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 179/358 (50%), Gaps = 43/358 (12%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
FA V S ++ +TG+NGKSTV T VG+M G+ VGGN+G P+ L
Sbjct: 100 FARAVKNSSSCVIGITGSNGKSTVTTLVGEMAKAAGLNYAVGGNIGIPV---------LD 150
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
+ + ++E+SS+Q+E + C + LN++ DH++R++ ++ Y K L+
Sbjct: 151 LLQSPIDLYILELSSFQLETTHSLNC-IAATCLNISEDHMDRYRDLEAYRQAKLSLYDQ- 208
Query: 154 VNTKLGLLPFGNQ--HLNEAIKGHRFNL-AWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
+K L + N+ + + F L + + GVK D + + E+ +
Sbjct: 209 --SKRALFNREDSLTQPNDPMDQNSFGLTSPVNDEWGVK-DGKIVHGASEI--------V 257
Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
L ++ ++G HN+ N +AA++ L G++ E++ + HR ++V +I V+
Sbjct: 258 SLDDVAIVGSHNHAN-LIAAMA-LAYHAGIEKESMIEVAKHFTGLAHRCELV-ANIDAVS 314
Query: 271 WVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAK---FGYSGVLIWK-----TLVNNG 320
+V+DSKATN+ AT L L H +++ GG K FG ++ K TL +G
Sbjct: 315 YVNDSKATNVGATVAALEGLSEHLGDIILIAGGDGKGADFGPLEAVLDKVTHLITLGKDG 374
Query: 321 LSIPCFA-----VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
I V +M DAV A +AT GD ++LSP CAS D ++NF RG F++L
Sbjct: 375 DKIAALKDNSKRVDSMADAVKQAAGLATAGDIVLLSPACASLDMYKNFMARGDDFRQL 432
>gi|359408617|ref|ZP_09201085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [SAR116 cluster
alpha proteobacterium HIMB100]
gi|356675370|gb|EHI47723.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [SAR116 cluster
alpha proteobacterium HIMB100]
Length = 451
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 177/370 (47%), Gaps = 55/370 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA + P+ + +A+TGTNGKST G +L G A +GGN+G P++
Sbjct: 93 VISEVEFALRTSPQG-RWVAITGTNGKSTTTALTGHILRQAGKTAVIGGNIGAPVT---- 147
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+LP + + +AV+E+SSYQ+E V V+LN+TPDHL+RH Y K
Sbjct: 148 ---SLP-EQTEDSIAVIELSSYQLET-TPSLRAAVRVILNITPDHLDRHGGWDGYVSAKQ 202
Query: 148 HLFSHMVNTKLGLLPFGNQHLNE--AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
+ +L +L G Q L++ A + H+ + +++D + A
Sbjct: 203 AILDSATKDELVILGPG-QPLDDIAADQQHKTRI--------IRLDDDCLAEEDRQKA-- 251
Query: 206 VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265
Q N + G HN N A A L + ++G+ +N I HR+Q R
Sbjct: 252 -----QAGNPALQGGHNQQNCAAARL--ICRELGLTDTQINDGISSFSGLAHRLQPAGR- 303
Query: 266 IQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAKF-GYSGVLIWKTLVNN---- 319
I+ + +++DSKATN EA L + H C GG AK G S + V +
Sbjct: 304 IEKIQFINDSKATNGEAAAKALASFTRIHWCA---GGIAKEDGLSACEAFFAHVQHAYFY 360
Query: 320 GLSIPCF--AVAN-------------MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
G S P F AVA ++ AV+ A + T+ I+LSP ASFD+F +FE
Sbjct: 361 GESAPEFEQAVAGKINSSCYDNLEKAVEAAVHSAAQTPTDEQVILLSPAAASFDQFTSFE 420
Query: 365 HRGMVFQELA 374
RG F ++A
Sbjct: 421 ARGDAFCQIA 430
>gi|441503427|ref|ZP_20985433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium sp.
AK15]
gi|441428925|gb|ELR66381.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium sp.
AK15]
Length = 445
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 188/405 (46%), Gaps = 66/405 (16%)
Query: 3 MLWLFLLEFQLKATGLAC----LLQS---GKRVMSELDFAAQVIPRSIKILAVTGTNGKS 55
M WL + + + G+A L+Q+ G ++ +++ A+ + + ++A+TG+NGKS
Sbjct: 63 MDWLLAADMIVASPGIALATPELVQAAEAGIEIVGDIELFARAVTK--PVVAITGSNGKS 120
Query: 56 TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPN 115
TV + VG+M GI VGGN+G AL + V+E+SS+Q+E +
Sbjct: 121 TVTSLVGEMAKEAGINVGVGGNIG---------FAALDMLAQDHDLYVLELSSFQLETTS 171
Query: 116 KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH 175
+V LNL+ DH++R+ +++Y+ K +F H +L + +
Sbjct: 172 SLKLKA-AVYLNLSEDHMDRYNGLEDYSQAKMRIFCH---AELAVF-------------N 214
Query: 176 RFNLA-----WIGAFPGVKIDTEA----KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA 226
R +LA + GA D+EA E AV + + ++GRHN N+
Sbjct: 215 RDDLATRPVDFYGAMTSFGFDSEAYGLITVNDEEYLAVDQQPVMATSQIALVGRHNVANS 274
Query: 227 AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTG 286
A IG D A ++ HR Q+V + Q V WV+DSKATNL +T
Sbjct: 275 LAALALADAAGIGHD--AACRALQRYNGLAHRCQLV-ANYQDVRWVNDSKATNLASTLAA 331
Query: 287 L--MDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCF---------------AVA 329
L ++L G K +L+GG K G + L N + + C+ +V
Sbjct: 332 LKGLNLSG-KLHLLVGGDGK-GADFSELKLVLANLNVQLYCYGRDGHHFASLVEAPLSVE 389
Query: 330 NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ A A GD ++LSP CASFD++ NF RG F LA
Sbjct: 390 TMEQAMQIAADTAQAGDMVLLSPACASFDQYPNFMARGDAFVALA 434
>gi|255536592|ref|YP_003096963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
bacterium 3519-10]
gi|255342788|gb|ACU08901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
bacterium 3519-10]
Length = 457
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 190/385 (49%), Gaps = 59/385 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q R+ SE++FA++ + KI+A+TG+NGK+T + + +L + G++ +GGN+G
Sbjct: 93 QKDIRLSSEIEFASEFT--NAKIIAITGSNGKTTTTSLIYHILKNDGLKVGLGGNIGKSF 150
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDHLERHK-TMK 140
++ + F V+EVSS+Q+ +I N F P +S++LNL+ DHL+++ +
Sbjct: 151 AKQV--------ADESFDYYVLEVSSFQLDDIQN--FRPHISLLLNLSQDHLDQYNYNYE 200
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN---QHLNEAIK--------GHRFNLAWIGAFPGVK 189
YAL K + + N + + Q+L E ++ + L G F G K
Sbjct: 201 EYALAKFRIAENQENDNFFIYNKDDEMSQNLLEKLEVKAKMIPFSLKEKLKEGGFFTGDK 260
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+ V + + + + ++G HN N+ A S+ G + + E++ +++
Sbjct: 261 M----------VVKLQDEFSMDIAELALVGNHNVANSLAA--SIAGKILKISNESIRNSL 308
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG 309
+ HR++ V + GV +++DSKATN+ AT L +K V ++GG K G
Sbjct: 309 MTFQAVQHRLEQVA-ETGGVRFINDSKATNVNATYYALESMK-QPTVWIVGGIDK-GNDY 365
Query: 310 VLIWKTLVNNGLSIPC-------------------FAVANMKDAVNHARRMATNGDAIVL 350
I + +I C ++ ++M +AVN ++ +A GDA++L
Sbjct: 366 TEIEDLVKRKVKAIVCLGLDNQKIVDFFKSKKDLIYSTSSMAEAVNISKSLAAKGDAVLL 425
Query: 351 SPGCASFDEFRNFEHRGMVFQELAF 375
SP CASFD F N+E RG F++ F
Sbjct: 426 SPCCASFDLFENYEDRGNQFKKEVF 450
>gi|167043605|gb|ABZ08299.1| putative Mur ligase family, catalytic domain protein [uncultured
marine microorganism HF4000_APKG2M17]
Length = 455
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 187/379 (49%), Gaps = 46/379 (12%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G + SE++ A+ I+A+TG+NGK+T +G + G FV GN+G P
Sbjct: 92 LSRGTSLYSEIEVASWFC--DAHIIAITGSNGKTTTTELLGHLFRKAGRNTFVCGNVGRP 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMK 140
S+ + P + V+EVSS+Q++ + F P VS++LN+TPDHL+R+ + +
Sbjct: 150 FSDDT------DRTGPD-DLVVLEVSSFQLDHIDS-FRPDVSILLNITPDHLDRYNQDID 201
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASF 199
YA +K + + + ++ + ++ R +A G+ I E + F
Sbjct: 202 RYAASKLRICENQTGVDTFIFNQDDERIARFVRKRARGPIAL-----GISITEEIRATGF 256
Query: 200 EVPA---VGVVSQ----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ + + Q + + + GRHN N+ AA++ ++ DV + ++
Sbjct: 257 LRNSDLMLRINDQEENLMPTEKLALRGRHNVFNSLAAAVAARVAEVRSDV--VRESLRSF 314
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGVL 311
PHR++IV RDI GV +++DSKATN+ A L V++ GG+ K YSG+
Sbjct: 315 EGVPHRLEIV-RDIDGVRYINDSKATNVNALWYALESFT-EPVVLIAGGRDKGNDYSGLK 372
Query: 312 -IWKTLVNNGLSIPCFAVA----------------NMKDAVNHARRMATNGDAIVLSPGC 354
+ +T V ++I A A ++ +AV A +A GD ++LSP C
Sbjct: 373 SLVQTRVRALITIGEAAEAIQAELGEFTADGVTTESLDEAVRLAHLLARPGDVVLLSPAC 432
Query: 355 ASFDEFRNFEHRGMVFQEL 373
ASFD F ++EHRG F+++
Sbjct: 433 ASFDMFDSYEHRGDQFKQI 451
>gi|399154390|ref|ZP_10754457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium SCGC AAA007-O20]
Length = 438
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 174/357 (48%), Gaps = 62/357 (17%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGKSTV +G+M G A + GN+G P+ E S + ++ VV
Sbjct: 103 IVGITGSNGKSTVTQLLGEMAIGSGKNAVICGNIGKPVME---------SLSDEAELYVV 153
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SSYQ++ N T VV N++PDHL+R+ Y +K L+ + + + L
Sbjct: 154 EMSSYQLDYTNNLNLLT-GVVTNISPDHLDRYPNYDIYIASKLKLYEYCQYSVVNL---- 208
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--------LQLHNMK 216
N+ L + IKG + I+ ++ F VG + + ++
Sbjct: 209 NEPLVKGIKGDSY----------YAIEEATQSCEFSAKKVGGIYTIYQGKNILMTSDDLI 258
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V+G+HN N +AALS LG G+ V+ + + PHR++ V ++ GV + ++SK
Sbjct: 259 VVGQHNVEN-VLAALS-LGQQAGLSVQEMIQVAKSFTGLPHRLEWVA-NLSGVDYFNNSK 315
Query: 277 ATNLEATCTGLMDLKG-HKCVILL-GGQAK--------------------FGYSGVLIWK 314
+TN +T T + L +K ++L+ GG AK G S L +
Sbjct: 316 STNAISTITAIEALSDRYKSIVLIAGGIAKKEDYSKLFQLISEKINAVILIGESATLFSQ 375
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
+ NG P V +MK AV ++ +A G AI+LSPGCASFD F +F RG VF+
Sbjct: 376 QI--NGC--PVSIVESMKQAVISSKAIAKEG-AILLSPGCASFDMFVDFNERGEVFK 427
>gi|423342823|ref|ZP_17320537.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
johnsonii CL02T12C29]
gi|409217078|gb|EKN10057.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
johnsonii CL02T12C29]
Length = 453
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 187/382 (48%), Gaps = 42/382 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 84 KAPIIKKLKEKGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTMLTYHILRQAGVDVG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++V+LN+TPDH
Sbjct: 142 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAVLLNITPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----- 186
L+R+ M+NY K + + + + + + + R A + F
Sbjct: 192 LDRYNYEMQNYVDAKFRILQNQT-VEDAFIFWNDDPIIAREIAKRHPEATLYPFAETHEA 250
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK TE K E + L + + G HN +N+ + ++ +DI E L
Sbjct: 251 GVKGYTEDKKIRIETSNGTFTMEQDL--LALSGTHNLYNSLASGIASKLVDIHD--ENLR 306
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
+++ HR++ V R ++GV +++DSKATN+ + L + +IL G
Sbjct: 307 ASLSDFTGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALQSMTTPLVLILGGTDKGND 365
Query: 307 YSGV----------LIWKTLVNNGL------SIPCFAVA-NMKDAVNHARRMATNGDAIV 349
YS + LI+ + N L +P A +M++AV+ A ++A GD ++
Sbjct: 366 YSEIEELVKKKVHALIFLGVDNTKLHAFFDGKVPVIEDARSMEEAVSKAYKLAEKGDTVL 425
Query: 350 LSPGCASFDEFRNFEHRGMVFQ 371
LSP CASFD F+++E RG F+
Sbjct: 426 LSPCCASFDLFKSYEDRGDQFK 447
>gi|399008629|ref|ZP_10711099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM17]
gi|398116065|gb|EJM05836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM17]
Length = 448
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 168/358 (46%), Gaps = 60/358 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTDQ-LGAEVATVLNISEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
Q + E + F L+ AF G++ + K +FE + + + +K
Sbjct: 216 RQDALTRPLIGEGLPCWTFGLSKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSK
Sbjct: 270 IRGAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVGYYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLI 312
ATN+ A + D++G K V++ GG K G I
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KIVLIAGGDGKGAEFKDLRDPVAANCRAVILMGRDSDKI 385
Query: 313 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ + G ++P V ++ DAV R A +GD ++LSP CASFD F+N+E RG F
Sbjct: 386 GEAI---GDAVPLIRVGSLVDAVAQCRAAAQSGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|253988592|ref|YP_003039948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photorhabdus
asymbiotica]
gi|253780042|emb|CAQ83203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photorhabdus
asymbiotica]
Length = 423
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 114/360 (31%), Positives = 177/360 (49%), Gaps = 58/360 (16%)
Query: 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101
+ I+A+TG+NGKSTV + VG+M G + VGGN+G P AL K Q+
Sbjct: 91 TTPIIAITGSNGKSTVTSLVGEMAKAAGWQVGVGGNIGLP---------ALELLKQSCQL 141
Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSH----MVNT 156
V+E+SS+Q+E + VLN+T DH++R+ + + Y K ++ +VN
Sbjct: 142 YVLELSSFQLET-TYSLKAAAATVLNVTEDHMDRYPQGLSQYRAAKLRVYHQAKRCIVNV 200
Query: 157 KLGL-LP---FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
+ L LP ++ ++ + + L AF +K+ ++ A+ E+
Sbjct: 201 QDTLTLPETGMDSRCVSVGVDCGDYQLDSENAF--LKVHNQSLLAANEI----------- 247
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
K+ GRHNY N VA L +G+ EA +T+ + HR Q+VH + GV W+
Sbjct: 248 ---KLTGRHNYVNGLVAL--ALADAVGIPREASLATLTVYPGLNHRFQLVHLN-NGVRWI 301
Query: 273 DDSKATNLEATCTGL--MDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA--- 327
+DSKATN+ +T L ++L+G +LLGG K L L + + + CF
Sbjct: 302 NDSKATNVGSTEAALNGLNLEG-TLYLLLGGDGKSADFSPL-KPFLCGDKVRLYCFGRDG 359
Query: 328 ---------VANMKDAVNHA-RRMATN---GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+A + + + A R +A GD ++LSP CAS D+FRNFE RG F LA
Sbjct: 360 KRLAQLRPEIATLTETMEQAIRDIAPRLVAGDMVLLSPACASLDQFRNFEQRGHEFARLA 419
>gi|300774444|ref|ZP_07084307.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
gleum ATCC 35910]
gi|300506259|gb|EFK37394.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
gleum ATCC 35910]
Length = 445
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 189/390 (48%), Gaps = 47/390 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA ++ + + G R+ SE++FA++ KI+A+TG+NGK+T + + +L + G+
Sbjct: 74 KADIISKIHEKGIRLSSEIEFASEFT--DAKIIAITGSNGKTTTTSLIYYILKNDGLNVG 131
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDH 132
+GGN+G + A + + V+EVSS+Q+ +I N F P +S++LNL+ DH
Sbjct: 132 LGGNIG--------YSFAKQVADENHEYYVLEVSSFQLDDIQN--FRPYISLLLNLSQDH 181
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+++ + YAL K + + N + ++ ++ I K+
Sbjct: 182 LDQYNYNYEEYALAKFRIAENQENDNFFIYNKDDEMSKNLLEKLEIKAKMIPFSTKEKLQ 241
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKV-----MGRHNYHNAAVAALSVLGLDIGVDVEALN 246
E+ VV +MKV +G HN N+ A S+ G + ++ E++
Sbjct: 242 EGGFVNEDEI----VVKMKDEFSMKVDELSLLGNHNVANSLAA--SIAGKILEINNESIR 295
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
++ + HR++ V +I GV +++DSKATN+ AT L +K V ++GG K G
Sbjct: 296 HSLMTFQAVEHRLEFV-TEIDGVKYINDSKATNVNATYYALESMKT-PTVWIVGGLDK-G 352
Query: 307 YSGVLIWKTLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDA 347
I + +I C + N M++AV ++ +A GD
Sbjct: 353 NDYTEIEDLVKRKVKAIVCLGIDNKKIIDFFKDKKEFIYDTSSMEEAVRISKSLAKKGDT 412
Query: 348 IVLSPGCASFDEFRNFEHRGMVFQELAFSA 377
++LSP CASFD F+++E RG F++ +A
Sbjct: 413 VLLSPCCASFDLFKSYEDRGRQFKQQVLNA 442
>gi|421107819|ref|ZP_15568368.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. H2]
gi|410007101|gb|EKO60814.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. H2]
Length = 463
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 181/392 (46%), Gaps = 73/392 (18%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE+D KI+ +TGT+GKST + + +L + GGNLG P +
Sbjct: 89 VISEIDLGRYFFKG--KIIGITGTDGKSTTTSLIAHLLKQGFPDLKEGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL DHLERHKTM+NY K
Sbjct: 147 ESISL---------AVLELSSYQLEDSSPLHL-NVSVFLNLASDHLERHKTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK--IDTEA---KTASF 199
+ + + N+ L+ ++ + E I ++ L G PG +D + KT+ F
Sbjct: 197 KI-ADLSNSNHSLIV--SEKIKERILNSTSYQCKLLSFGKTPGSNAFLDESSLKIKTSKF 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ +S+ L G HN N A + L+ +IG E++ + I + R PHR
Sbjct: 254 ----IYDISKFYLP-----GSHNRENLAASILA--AEEIGEKPESIQTRIPLFRGLPHRF 302
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK---------FGYSG 309
QI + G+++++DSK+TNL + G+ K + ++LGG+ K F G
Sbjct: 303 QIAGEKL-GISFINDSKSTNLHSMLAGMATWKNLDQTCLILGGRPKQEDPKPLYNFLIKG 361
Query: 310 V----------LIWKTLVNNGLSIPCFAVANMKDAVNHARR--MATNGD----------- 346
+ +W+ + N + V N+ DA ++ + T D
Sbjct: 362 IGCVVLFGEARSVWENGIRNIIGEKLHCVENLNDAFEIFKKGYILTAADSGKDSIFRLSH 421
Query: 347 -----AIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ V SP CASFD+++NFE RG F L
Sbjct: 422 GISISSFVFSPACASFDQYKNFEERGNHFLSL 453
>gi|384134946|ref|YP_005517660.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289031|gb|AEJ43141.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 458
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 187/388 (48%), Gaps = 61/388 (15%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A LL++ ++++++ A+ R I A+TG+NGK+T T VG ML G V GN
Sbjct: 94 IAELLKASHVMVTDVEIASWFETR--PIYAITGSNGKTTTTTLVGAMLEASGYRPVVAGN 151
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P+ + + P + V+EVSS+Q++ F P +LN P HL+ H
Sbjct: 152 IGTPVCD----VVDQPG-----DLLVLEVSSFQLD-GTHTFHPRGGALLNFYPAHLDYHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE------------AIKGHRFNLAWIGAF 185
T + Y K LF++ + +L + + + + +++G F+ +G
Sbjct: 202 TYEAYQQAKWKLFANQTPDDVAILNWDQELVRDRAGNLAARVRGFSLEGAPFDEG-VGVI 260
Query: 186 PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
G + + S +P V Q+ L GRHN NAA AA L G VEA+
Sbjct: 261 DGTLVAVTGRERSPILP----VEQVALP-----GRHNLQNAAAAAAMAL--AAGASVEAV 309
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF 305
+ + HR++ V R++ GV + +DSKATN +A L + + ++ + G
Sbjct: 310 ARVLATFQGVEHRLEFV-REVSGVRYYNDSKATNPDAARQALRSFE--RGIVWIAGGLDR 366
Query: 306 GYS--------------GVLIWKT-------LVNNGLSIPCFAVANMKDAVNHARRMATN 344
G S VL+ +T L G+S+ FA A+M++AV A RMA
Sbjct: 367 GISFDPLLPDISGRVRAAVLLGETKEKLRDVLARAGVSMCVFA-ASMEEAVREASRMAEP 425
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQE 372
GD ++LSP CAS+D F ++E RG +F+E
Sbjct: 426 GDVVLLSPACASWDMFPSYEVRGSMFKE 453
>gi|169351140|ref|ZP_02868078.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
gi|169292202|gb|EDS74335.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
spiroforme DSM 1552]
Length = 452
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 177/376 (47%), Gaps = 34/376 (9%)
Query: 21 LLQSGKR---VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+L+ KR V +E++ A QV + + VTGTNGK+T VT + ++L + GN
Sbjct: 84 ILRLKKRNIPVYTEIELAYQVAKKQ-HYIGVTGTNGKTTTVTLIDKILKGQYQNVHLAGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + L V+E+S++Q+ + F P VS ++NLTPDHL+
Sbjct: 143 VGMPLCDIVLDHNLLEEEN---HYIVIEMSNFQL-LDIDTFKPNVSTIINLTPDHLDYMA 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
++ Y +K +++ + ++ +Q L++ +K + I + D K
Sbjct: 199 SLDEYYASKTNIYKNTNKNDCFVVNLDDQVLDKYLKQYPIPCKQITMSLDNQADCMIKDK 258
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+ ++ L ++K++G HN N +A D V E +N I H
Sbjct: 259 AIYYQNEFIID---LDDIKLVGNHNLQNIMIAICIAKKCD--VKNEIINQEIASFIGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------FGYSGV 310
R++ V ++I G+ +DSKATN +A+ L K ++L+GG K YS
Sbjct: 314 RIEFV-KEINGIKIYNDSKATNTDASIIALKAFK-QPVILLMGGFDKGLDLKEMSTYSNK 371
Query: 311 LIWKTLVNNGLSIPCFA----------VANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
+ K LV G + F V N+K+A A AT GD ++LSP +SFDEF
Sbjct: 372 I--KRLVTFGAAGKRFKDEMHVENSICVKNLKEATLEAINNATAGDIVLLSPSTSSFDEF 429
Query: 361 RNFEHRGMVFQELAFS 376
+E RG VF+E+ S
Sbjct: 430 SGYEQRGNVFKEIVCS 445
>gi|304392258|ref|ZP_07374200.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
R2A130]
gi|303296487|gb|EFL90845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
R2A130]
Length = 463
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 170/364 (46%), Gaps = 57/364 (15%)
Query: 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG------NPLSEAAFHCIALPS 94
R ++A+TGTNGKST + +L G + +GGN+G +PLSE
Sbjct: 112 RPAPVIAITGTNGKSTTTALIAHVLKQAGRDVQMGGNIGRAVLDLDPLSE---------- 161
Query: 95 SKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154
P QV VVE+SSYQ+++ P V ++LNLTPDHLERH T++NYA K L +
Sbjct: 162 -TPANQVYVVEISSYQIDL-APSIAPHVGLLLNLTPDHLERHGTLENYAGIKERL---VA 216
Query: 155 NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHN 214
+ L ++ ++H AI G R + + P V I + F +V + +
Sbjct: 217 ASDLAVVGLDDEHC-RAISG-RISASRT---PLVTISKDGAADVFFADGKLIVDGDMVID 271
Query: 215 M----KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
+ + G+HN NAA A + +G+ E + S HRM+ + V
Sbjct: 272 LSGVGSLRGQHNGQNAAAAFAAC--RAVGLSSEEIQSGFNSFPGLAHRMEQAGH-VGDVL 328
Query: 271 WVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVL------IWKTLVNNGL--- 321
+V+DSKATN EA L K + GG AK G G L I K
Sbjct: 329 FVNDSKATNAEAVAPALSSFP--KVHWIAGGLAKDGGIGSLAPQFDRIAKAYFIGEAAGS 386
Query: 322 -------SIPCFAVANMKDAVNHARRMAT-----NGDAIV-LSPGCASFDEFRNFEHRGM 368
+IP ++K AVNHA R A+ +A+V LSP ASFD+F NFE RG
Sbjct: 387 FASQLPDTIPYEIAGSLKQAVNHAARDASLAAGKGAEAVVLLSPAAASFDQFPNFEKRGE 446
Query: 369 VFQE 372
F++
Sbjct: 447 AFKD 450
>gi|418694755|ref|ZP_13255788.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. H1]
gi|409957452|gb|EKO16360.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. H1]
Length = 463
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 181/392 (46%), Gaps = 73/392 (18%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE+D KI+ +TGT+GKST + + +L + GGNLG P +
Sbjct: 89 VISEIDLGRYFFKG--KIIGITGTDGKSTTTSLIAHLLKQGFPDLKEGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL DHLERHKTM+NY K
Sbjct: 147 ESISL---------AVLELSSYQLEDSSPLHL-NVSVFLNLASDHLERHKTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK--IDTEA---KTASF 199
+ + + N+ L+ ++ + E I ++ L G PG +D + KT+ F
Sbjct: 197 KI-ADLSNSNHSLIV--SEKIKERILNSTSYQCKLLSFGKTPGSNAFLDESSLKIKTSKF 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ +S+ L G HN N A + L+ +IG E++ + I + R PHR
Sbjct: 254 ----IYDISKFYLP-----GSHNRENLAASILA--AEEIGEKPESIQTRIPLFRGLPHRF 302
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK---------FGYSG 309
QI + G+++++DSK+TNL + G+ K + ++LGG+ K F G
Sbjct: 303 QIAGEKL-GISFINDSKSTNLHSMLAGMATWKNLDQTCLILGGRPKQEDPKPLYNFLIKG 361
Query: 310 V----------LIWKTLVNNGLSIPCFAVANMKDAVNHARR--MATNGD----------- 346
+ +W+ + N + V N+ DA ++ + T D
Sbjct: 362 IGCVVLFGEARSVWENGIRNIIGEKLHCVENLNDAFEIFKKGYILTAADSGKDSIFRLSH 421
Query: 347 -----AIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ V SP CASFD+++NFE RG F L
Sbjct: 422 GISISSFVFSPACASFDQYKNFEERGNHFLSL 453
>gi|440738884|ref|ZP_20918406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens BRIP34879]
gi|447915295|ref|YP_007395863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
poae RE*1-1-14]
gi|440380256|gb|ELQ16823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens BRIP34879]
gi|445199158|gb|AGE24367.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
poae RE*1-1-14]
Length = 448
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 169/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGVP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L F G I E K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGLPCWTFGLGKPD-FKGFGIREENGEKYLAFEFEHL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ +++ HR Q V RD+ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLASLRTFGGLEHRCQWV-RDLDGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G LI
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGADFKDLKAPVAAHCRAVVLMGRDSDLIAA 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L N+ + + A++ DA+ + +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 388 ALGNDVVQV---RAASLDDAIAQCKALAQPGDAVLLSPACASFDMFKNYEERGQLF 440
>gi|300722057|ref|YP_003711337.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xenorhabdus
nematophila ATCC 19061]
gi|297628554|emb|CBJ89126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
nematophila ATCC 19061]
Length = 441
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 116/360 (32%), Positives = 171/360 (47%), Gaps = 64/360 (17%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 112 IVAITGSNGKSTVTTLVGEMAKEAGWQVGVGGNIGVP---------ALELLKKSCQLYVL 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + VLN+T DH+ R+ + + Y K ++ +VN +
Sbjct: 163 ELSSFQLET-TYSLKAAAATVLNVTEDHMVRYPEGLPQYRAAKLRIYDQAKACIVNAQDQ 221
Query: 160 L-LPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQ---LQLHN 214
L LP G G G G ++D+E + VV+Q L +
Sbjct: 222 LTLPAG---------GEESCYISFGVDSGDYQLDSEHQQL--------VVNQCPVLATRD 264
Query: 215 MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP---HRMQIVH-RDIQGVT 270
M++ G+HNY N A +G+ EA +++ LRT HR Q+VH RD G+
Sbjct: 265 MQLAGQHNYTNGLAALALA--DAVGIPREA---SLQALRTYSGLDHRFQVVHMRD--GIR 317
Query: 271 WVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA--- 327
W++DSKATN+ +T L LK + LL G + + N + + CF
Sbjct: 318 WINDSKATNVGSTQAALSGLKVEGTLYLLVGGDGKSADFTPLKPDISGNNIRLYCFGRDG 377
Query: 328 ---------VANMKDAVNHA-RRMATN---GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+A + + + A R +A+ GD ++LSP CASFD+F FEHRG F LA
Sbjct: 378 DQLAQLRPEIAVLTETMEQAMREIASKLVAGDMVLLSPACASFDQFNGFEHRGHEFARLA 437
>gi|313147882|ref|ZP_07810075.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
gi|313136649|gb|EFR54009.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
Length = 444
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 190/380 (50%), Gaps = 50/380 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKEQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEEHDYYVIELSSFQLD--NMYKFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA--FPGVKIDTEAKT 196
M+NY K + + T F N ++ I + I A +P I E
Sbjct: 190 MQNYINAKFRITQN--QTSEDAFIFWN---DDPIIKRELDKHGICAHLYPFSAIKEEGSI 244
Query: 197 ASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEI 251
A E V + + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 245 AYVEDHEVVITAPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKENIRRALSD 301
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV 310
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+ +
Sbjct: 302 FQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTEI 359
Query: 311 ----------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIVLSP 352
L++ L N + L +P V MKDAV A ++A G+ ++LSP
Sbjct: 360 EELVREKCSALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVLLSP 419
Query: 353 GCASFDEFRNFEHRGMVFQE 372
CASFD F+++E RG F++
Sbjct: 420 CCASFDLFKSYEDRGDQFKK 439
>gi|372269624|ref|ZP_09505672.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Marinobacterium stanieri S30]
Length = 449
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 166/354 (46%), Gaps = 51/354 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VGQM G+ VGGN+G P+ L + + V+
Sbjct: 111 IVAITGSNAKSTVTTLVGQMAEQAGLAVGVGGNIGTPM---------LDLLEQACDLYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E N+ V+ VLN++PDHL+R+ M++Y LTK ++ +L
Sbjct: 162 ELSSFQLETANE-LKAAVATVLNISPDHLDRYNGMQDYVLTKQRIYRGAAK----VLANR 216
Query: 165 NQHLNEAIKGHRFNLAWIG-AFPGVK----IDTEAKTASFEVPAVGVVSQLQLHNMKVMG 219
+ L + + L G P +K + E +T + G+ L + MK+ G
Sbjct: 217 DDQLTQPLMAQGVELKRFGLGAPDLKDYGLCEHEGETWLCQ----GLTPLLPVSAMKIRG 272
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKA 277
+HNY NA A +DI E S + HR Q V HR GV + +DSK
Sbjct: 273 QHNYANALAALALADAVDI--PREPALSALREFAGLEHRCQWVAEHR---GVGYFNDSKG 327
Query: 278 TNLEATCTGLMDL-----KGHKCVILLGGQAK-------------FGYSGVLIWKT---L 316
TN+ AT L L +G++ ++L GG K +G + VL + +
Sbjct: 328 TNVGATLAALEGLGATLGEGNRLILLAGGVGKDQAFGDLSAPLQRYGRALVLFGRDAQQI 387
Query: 317 VNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
I +++ AV A ++A GD ++LSP CASFD F + RG F
Sbjct: 388 AAEVSGIETHFADSLETAVKAAAQLAQPGDLVLLSPACASFDMFSGYPERGRAF 441
>gi|387892152|ref|YP_006322449.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens A506]
gi|387160876|gb|AFJ56075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens A506]
Length = 448
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 168/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGVP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E + V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTHD-LGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L F G I E K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGMPCWTFGLGKPD-FKGFGIREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ +++ HR Q V RD+ V++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLASLRTFAGLEHRCQWV-RDLNDVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G LI
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGADFKDLKTPVAAHCRAVVLMGRDSDLIAA 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L G ++P A++ DA+ + +A GDA++LSP CASFD F+N+E RG +F
Sbjct: 388 AL---GDAVPQVRAASLDDAIAQCKALAQPGDAVLLSPACASFDMFKNYEERGQLF 440
>gi|423281159|ref|ZP_17260070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 610]
gi|424665904|ref|ZP_18102940.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 616]
gi|404574157|gb|EKA78908.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 616]
gi|404583323|gb|EKA88004.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
fragilis HMW 610]
Length = 444
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 190/380 (50%), Gaps = 50/380 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKEQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEEHDYYVIELSSFQLD--NMYKFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA--FPGVKIDTEAKT 196
M+NY K + + T F N ++ I + I A +P I E
Sbjct: 190 MQNYINAKFRITQN--QTSEDAFIFWN---DDPIIKRELDKHGICAHLYPFSAIKEEGSI 244
Query: 197 ASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEI 251
A E V + + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 245 AYVEDHEVVITAPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKENIRRALSD 301
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV 310
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+ +
Sbjct: 302 FQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTEI 359
Query: 311 ----------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIVLSP 352
L++ L N + L +P V MKDAV A ++A G+ ++LSP
Sbjct: 360 EELVREKCSALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVLLSP 419
Query: 353 GCASFDEFRNFEHRGMVFQE 372
CASFD F+++E RG F++
Sbjct: 420 CCASFDLFKSYEDRGDQFKK 439
>gi|398951321|ref|ZP_10673969.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM33]
gi|398156708|gb|EJM45122.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM33]
Length = 448
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 169/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLHDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGKGAEFKDLRDPVAANCRAVVLMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P VA++ +AV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRVASLVEAVEQCRAAAQPGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|160883882|ref|ZP_02064885.1| hypothetical protein BACOVA_01855 [Bacteroides ovatus ATCC 8483]
gi|237720376|ref|ZP_04550857.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_2_4]
gi|262405421|ref|ZP_06081971.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_22]
gi|293370476|ref|ZP_06617029.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
ovatus SD CMC 3f]
gi|294646202|ref|ZP_06723856.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
ovatus SD CC 2a]
gi|294809131|ref|ZP_06767849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
xylanisolvens SD CC 1b]
gi|298480582|ref|ZP_06998779.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
D22]
gi|336404498|ref|ZP_08585193.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
1_1_30]
gi|345511027|ref|ZP_08790582.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
gi|423290578|ref|ZP_17269427.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
CL02T12C04]
gi|156110612|gb|EDO12357.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
ovatus ATCC 8483]
gi|229442629|gb|EEO48420.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
gi|229450127|gb|EEO55918.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_2_4]
gi|262356296|gb|EEZ05386.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_22]
gi|292634468|gb|EFF53004.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
ovatus SD CMC 3f]
gi|292638420|gb|EFF56784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
ovatus SD CC 2a]
gi|294443685|gb|EFG12434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
xylanisolvens SD CC 1b]
gi|295086278|emb|CBK67801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
xylanisolvens XB1A]
gi|298273403|gb|EFI14967.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
D22]
gi|335942295|gb|EGN04142.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
1_1_30]
gi|392665231|gb|EIY58759.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
CL02T12C04]
Length = 444
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 187/381 (49%), Gaps = 52/381 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISA-NL-AGIAKENIRKALS 300
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSG 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 301 DFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTE 358
Query: 310 V----------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLS 351
+ L++ L N L +P V MKDAV A ++A G+ ++LS
Sbjct: 359 IEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLS 418
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CASFD F+++E RG F+E
Sbjct: 419 PCCASFDLFKSYEDRGDQFKE 439
>gi|423214886|ref|ZP_17201414.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
xylanisolvens CL03T12C04]
gi|392692149|gb|EIY85387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
xylanisolvens CL03T12C04]
Length = 444
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 187/382 (48%), Gaps = 54/382 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GIAKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYS 308
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYT 357
Query: 309 GV----------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVL 350
+ L++ L N L +P V MKDAV A ++A G+ ++L
Sbjct: 358 EIEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 417
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CASFD F+++E RG F+E
Sbjct: 418 SPCCASFDLFKSYEDRGDQFKE 439
>gi|383111005|ref|ZP_09931823.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D2]
gi|313694576|gb|EFS31411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D2]
Length = 444
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 187/381 (49%), Gaps = 52/381 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISA-NL-AGIAKENIRKALS 300
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSG 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 301 DFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTE 358
Query: 310 V----------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLS 351
+ L++ L N L +P V MKDAV A ++A G+ ++LS
Sbjct: 359 IEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLS 418
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CASFD F+++E RG F+E
Sbjct: 419 PCCASFDLFKSYEDRGDQFKE 439
>gi|423294146|ref|ZP_17272273.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
CL03T12C18]
gi|392676642|gb|EIY70073.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
CL03T12C18]
Length = 444
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 187/382 (48%), Gaps = 54/382 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GIAKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYS 308
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYT 357
Query: 309 GV----------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVL 350
+ L++ L N L +P V MKDAV A ++A G+ ++L
Sbjct: 358 EIEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 417
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CASFD F+++E RG F+E
Sbjct: 418 SPCCASFDLFKSYEDRGDQFKE 439
>gi|349574826|ref|ZP_08886759.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
shayeganii 871]
gi|348013614|gb|EGY52525.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
shayeganii 871]
Length = 445
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 163/352 (46%), Gaps = 51/352 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+A+TG+NGK+TV + VG + G++ V GN+G P+ EA P+ V V
Sbjct: 113 KIIAITGSNGKTTVTSLVGHLCAQAGLDTVVAGNIGTPVLEAYLQRAGKPAD-----VWV 167
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+E + +V LN++ DHL+R+ + +YA +K +F+ L
Sbjct: 168 LELSSFQLETTPE-LDADAAVCLNISEDHLDRYDDLLDYARSKDAIFNGQGVQVLNADDV 226
Query: 164 GNQHLNEAIKGHR-FNLAWIGAFP----GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ + A + R F+L G + +K D EA + E+P +
Sbjct: 227 FCRAMKRAGREVRWFSLHGQGGYALHAGDLKADGEAMMRAAEIP--------------LQ 272
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A G IG+ +AL + + + PHR+++V + GV ++DDSK T
Sbjct: 273 GSHNAANVLAALALCEG--IGLPRDALLAGVRSFQGLPHRVELVA-EKNGVRFIDDSKGT 329
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAK--------------------FGYSGVLIWKTLVN 318
N+ ATC + L V++ GGQ K G + + L
Sbjct: 330 NVGATCAAIAGLDA-PIVLVAGGQGKGQDFTPLREALKGKVRGVVLIGADAAQVGRDLAG 388
Query: 319 NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
G F ++ A A +MA GD ++LSP CAS+D F + HR VF
Sbjct: 389 CGAEPEYF--DDLPAATRRAYQMAEPGDIVLLSPACASYDMFEGYAHRAQVF 438
>gi|420149877|ref|ZP_14657045.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 335 str. F0486]
gi|394753074|gb|EJF36679.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 335 str. F0486]
Length = 444
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 183/376 (48%), Gaps = 48/376 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+SE++FA+Q I + +TG+NGK+T + G++ +GGN+G
Sbjct: 84 EKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTYHIFKEAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATENPLYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF-- 199
Y +K + + + ++ + + + H I I+ E +F
Sbjct: 193 YINSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEKELPQGAFLK 248
Query: 200 ----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ +++ + + + G+HN N A SV + + +L +++ +
Sbjct: 249 DNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRESLKGFKGA 306
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGVLIWK 314
PHR++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K Y+ +L +
Sbjct: 307 PHRLEEV-KVVDGVTYVNDSKATNVNSVFYALDTIK-TPIVWIVGGQDKGNDYNSLLPY- 363
Query: 315 TLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCA 355
+ +I C V N M +AV A+ A GD ++LSP CA
Sbjct: 364 -VHEKVRAIVCLGVDNSPIIQSFYNTIGTLVETRSMDEAVKLAQGFAQEGDTVLLSPACA 422
Query: 356 SFDEFRNFEHRGMVFQ 371
SFD F+N+E RG +F+
Sbjct: 423 SFDLFKNYEERGDLFK 438
>gi|336397531|ref|ZP_08578331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prevotella
multisaccharivorax DSM 17128]
gi|336067267|gb|EGN55901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prevotella
multisaccharivorax DSM 17128]
Length = 470
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 184/377 (48%), Gaps = 43/377 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L++ G ++SE++FA + K++ +TG+NGK+T + + + G +A + GN+G
Sbjct: 109 LIKQGTHIISEIEFAGRYTHS--KMICITGSNGKTTTTSLIYHIFKKAGYDAGLAGNIGR 166
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 167 SL--------ALQVAENPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDFK 216
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA K + + T+ F N + +F++ + P +I +A A
Sbjct: 217 FENYADAKLRITQNQ--TEDDSFIFWNDDPVIKKEMEKFDIKAVRC-PFSEIKEDASVAY 273
Query: 199 FEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
E + ++ + + G+HN +N+ A L+ I D+ + ++
Sbjct: 274 IEEGEYKLEYPTPFNMEQETLSLTGKHNLYNSLAAGLAANISGIKKDI--IRKSLSDFPG 331
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---------- 304
HR++ V + + GV +++DSKATN++A C ++ +++LGG+ K
Sbjct: 332 VEHRLEKVCK-VGGVQYINDSKATNVDA-CWYALESMTTPTILILGGKDKGNDYHHIFDL 389
Query: 305 -------FGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
Y G K N + IP +MK+ VN MA G+ ++LSP CAS
Sbjct: 390 VKEKCVGLVYLGADNTKLHNNFDSFGIPVRDTHSMKECVNACYEMAKPGETVLLSPCCAS 449
Query: 357 FDEFRNFEHRGMVFQEL 373
FD F+N E RG F+EL
Sbjct: 450 FDLFKNMEDRGEQFKEL 466
>gi|398798933|ref|ZP_10558229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea sp. GM01]
gi|398099531|gb|EJL89788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea sp. GM01]
Length = 438
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 169/369 (45%), Gaps = 80/369 (21%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP---------ALTLLKSPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LNLT DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNLTEDHMDRYPLGMQQYRAAKLRIYENASVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGVDQRCVSFGINLGDYHLNQ-----QQGSTWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--GVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A ++I ++AL + + HR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVNIPRASSLKALTTFTGL----AHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGL 321
H + GV W++DSKATN+ +T L L+ + +LLGG K L + L + +
Sbjct: 308 H-EANGVRWINDSKATNVGSTEAALNGLQVKGTLWLLLGGDGKSADFSPLA-RYLQGDKV 365
Query: 322 SIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 365
+ CF M+ A+ T GD ++LSP CAS D+FRNFE
Sbjct: 366 KLFCFGRDGDALAALRPEIATRTDTMQQAMTQIAAQVTAGDMVLLSPACASLDQFRNFEQ 425
Query: 366 RGMVFQELA 374
RG F +LA
Sbjct: 426 RGDQFAQLA 434
>gi|339319729|ref|YP_004679424.1| phospho-N-acetylmuramoyl-pentapeptide- transferase [Candidatus
Midichloria mitochondrii IricVA]
gi|338225854|gb|AEI88738.1| phospho-N-acetylmuramoyl-pentapeptide- transferase [Candidatus
Midichloria mitochondrii IricVA]
Length = 461
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 172/379 (45%), Gaps = 66/379 (17%)
Query: 31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI 90
+++F Q +++ + +TGTNGKST + +L + I+ +GGN+G P+ E
Sbjct: 106 DIEFLYQKTNKNVGFIGITGTNGKSTTTALINHVLRSVKIKTEIGGNIGTPVLE------ 159
Query: 91 ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF 150
L F V+EVSS+Q+++ K ++V L +TPDHL++H T K Y K +F
Sbjct: 160 -LEELNSGFY--VLEVSSFQLDLLEKTRF-NIAVCLTITPDHLDKHGTFKRYVEAKQQMF 215
Query: 151 SHMVNTKLGLLP----FGNQHLNEAIKGHRFNL----------AWIGAFPGVKIDTEAKT 196
++ L ++ NQ ++E I R + + GV D
Sbjct: 216 NNQEKGDLAIISTDSYINNQIMSEVIARKRAKVIPISRTEQIEGGVSVISGVLYDNYKSK 275
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ VP + ++G HN N A A + +G +GV E + + + ++ P
Sbjct: 276 KRYNVPDIN----------SLIGEHNGENMAAAFTACIG--VGVKPEEVIAAFKTYKSLP 323
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD------LKGHKC----VILLG------ 300
HRM + HR G+ +++DSKATN ++T L + + G C + LL
Sbjct: 324 HRMDLFHR-FNGINFINDSKATNADSTYWALKNFDNVYWIAGGICKDSGIKLLKPFFEKI 382
Query: 301 ------GQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
G A G++ +L ++P + +A++ + ++LSP C
Sbjct: 383 NHAYLIGDAAEGFAAILAES-------NVPYTIATTLVNAISIIKAQNIENGNVLLSPAC 435
Query: 355 ASFDEFRNFEHRGMVFQEL 373
AS D+++N+E RG F +L
Sbjct: 436 ASLDQWKNYEERGNAFMKL 454
>gi|340622896|ref|YP_004741348.1| D-glutamic acid-adding enzyme [Capnocytophaga canimorsus Cc5]
gi|339903162|gb|AEK24241.1| D-glutamic acid-adding enzyme [Capnocytophaga canimorsus Cc5]
Length = 444
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 185/375 (49%), Gaps = 52/375 (13%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++SE++FA + KI+A+TG+NGK+T + +L G+ V GN+G +
Sbjct: 88 EIISEIEFAYRYTKG--KIIAITGSNGKTTTTSLTYHILKESGLNVGVAGNIGK-----S 140
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145
F + K + V+E+SS+Q++ F P ++++LN+TPDHL+R+ M+NY +
Sbjct: 141 FAQMVAEDDKEYY---VLEISSFQLDGITS-FKPHIAILLNITPDHLDRYDYKMENYIAS 196
Query: 146 KCHLFSHMVN----TKLGLLPFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
K + + P Q L + IK + + I+ E +
Sbjct: 197 KFRITENQTEDDYFIYDIDDPIIAQWLEKNEIKSQKIPFS---------IEKELNKGIYS 247
Query: 201 VPAV------GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + ++++ M + G+HN N+ A++S L V E++ +++
Sbjct: 248 LKDIIHMNIDNQTFEIEVKEMSLKGKHNVKNSMAASVSSRLLK--VRKESIRESLKGFVG 305
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW- 313
PHR++ V + ++G+T+++DSKATN+ + L +K I+ G YS +L +
Sbjct: 306 EPHRLEFV-KTVEGITYINDSKATNVNSVFFALDTMKTPVVWIVGGVDKGNDYSPLLPYV 364
Query: 314 ----KTLV----NNGLSIPCFA--------VANMKDAVNHARRMATNGDAIVLSPGCASF 357
+ +V +N + F +M++AV+ +++ A NGD ++LSP CASF
Sbjct: 365 HEKVRAIVCLGKDNSPILKSFGNVIDNILETQSMEEAVSLSKQFAKNGDTVLLSPACASF 424
Query: 358 DEFRNFEHRGMVFQE 372
D F+N+E RG F++
Sbjct: 425 DLFKNYEERGNEFKK 439
>gi|297616979|ref|YP_003702138.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
lipocalidus DSM 12680]
gi|297144816|gb|ADI01573.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
lipocalidus DSM 12680]
Length = 456
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 183/380 (48%), Gaps = 41/380 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
++++G V+ E++ A + +++I+A+TGTNGK+T FV ++L+ G+ GN+G
Sbjct: 88 VIEAGTPVIGEIELAYHLKNDAVEIVAITGTNGKTTTTAFVAEILDKSGVNTAACGNIGV 147
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PL + + V VEVSS+Q+E + F P V+ VLN+TPDHL+RH TM+
Sbjct: 148 PLISVI--------DEIEHGVVSVEVSSFQLETI-REFHPRVAAVLNITPDHLDRHGTME 198
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKT 196
Y K + S+ +L + + + L K + P GV ++
Sbjct: 199 QYVEAKAKILSNQGPDDFSVLNYEDAWVRRLKTEAKSQVIFFSTARRLPRGVYVEDGKIK 258
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A V + + N+ + G HN N A + L GV + + T+ +
Sbjct: 259 ARLYDDEVVICPR---ENVALRGEHNLENVLCAVGIAIAL--GVKPDTIADTLRSFKGVR 313
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------ 304
HR++ V R + GV +V+DSK TN E+T L + +++ GG+ K
Sbjct: 314 HRLEEVRR-VNGVLYVNDSKGTNPESTIKALQAFQ-EPVILIAGGRNKGADFTVLSRVIK 371
Query: 305 --------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G + +LI + ++ G A + ++AV A+ +A GD ++LSP CAS
Sbjct: 372 DKVRHLVLVGEASLLIREKVLEQGFQHIDVA-KSFEEAVYRAKELARPGDVVLLSPACAS 430
Query: 357 FDEFRNFEHRGMVFQELAFS 376
+D F +FE RG +F +L S
Sbjct: 431 WDMFNSFEERGDLFCQLVNS 450
>gi|403745271|ref|ZP_10954209.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
hesperidum URH17-3-68]
gi|403121499|gb|EJY55792.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
hesperidum URH17-3-68]
Length = 453
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 177/380 (46%), Gaps = 49/380 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G + SE++ A+ R I A+TG+NGK+T T V +ML G FVGGN+G
Sbjct: 90 LAAKGVPIFSEIEVASWFTERPI--YAITGSNGKTTTTTLVSEMLRAAGRLPFVGGNIGT 147
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P +EA + + +P V+EVSS+Q+ + F P + +LN P HL+ H T +
Sbjct: 148 PFAEA---VLEEQTDEP----VVLEVSSFQL-MGTWRFRPRGAALLNFYPAHLDYHGTFE 199
Query: 141 NYALTKCHLFSHM-------VNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE 193
Y K +FS+M +N L+ G L + H F++ + GV ++ E
Sbjct: 200 AYQEAKWKMFSNMEQGDIAVLNADQDLVAGGASRLRADV--HYFSVDHVRFAFGVGVEDE 257
Query: 194 AKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ G V +L + + + GRHN N V A + L G EA+
Sbjct: 258 ----DIVIVERGEVRRLLPIAEVALPGRHNLQN--VVAAAALAQAAGASDEAIRQVAATF 311
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
+ HR++ V R++ GV + +DSKATN +A L H V + GG +
Sbjct: 312 QGVEHRLEFV-RELHGVRYYNDSKATNPDAARQALRSF-AHGIVWIAGGLDRGLSFDSLL 369
Query: 305 ------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
G + + T G+ A +++ +AV A R+A GD ++LSP
Sbjct: 370 PELRGRVKAAVCLGQTREALRNTCQRAGVEQIELA-SSLDEAVQRAHRLAEPGDTVLLSP 428
Query: 353 GCASFDEFRNFEHRGMVFQE 372
CAS+D F +FE RG +F+E
Sbjct: 429 ACASWDMFSSFEVRGSMFKE 448
>gi|365842362|ref|ZP_09383384.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Flavonifractor
plautii ATCC 29863]
gi|364575892|gb|EHM53253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Flavonifractor
plautii ATCC 29863]
Length = 479
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 181/396 (45%), Gaps = 77/396 (19%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ QV P K +AVTG++GK+T T + ++L G +VGGN+G PL
Sbjct: 115 ERGSTITSEMEVFFQVCP--CKTIAVTGSDGKTTTTTIIAELLKAAGQSVYVGGNIGKPL 172
Query: 83 SEAAFHCIALPSSK---PKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
LP P+ VAV+E+SS+Q+ + P ++VV NL P+HL+ HK+M
Sbjct: 173 ---------LPDVDGMVPE-DVAVLELSSFQLMTMEQ--SPDIAVVTNLAPNHLDVHKSM 220
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+ Y K ++F+H L +L NQ NE +G F ++ G E + F
Sbjct: 221 EEYIAAKENIFTHQGADGLLVL---NQD-NEITRG--FAVSARGRVTRFSRREELEQGVF 274
Query: 200 -------------EVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGV-DVE 243
E P L L N+ + G HN N AA+ AL L D V D
Sbjct: 275 VRDGAIWVRNAMHERPV------LYLENILLPGEHNIENYMAAIGALDGLVPDQVVRDFA 328
Query: 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303
A + +E HR+++V R GV + +DS A++ T GL K V++ GG
Sbjct: 329 AKFAGVE------HRIELV-RTRNGVRYYNDSIASSPSRTIAGLRSFH-QKVVLIAGGYD 380
Query: 304 K------FGYSGVLIWKTLVNNGLSIP---------------CFAVANMKD---AVNHAR 339
K G V K LV G + P + KD AV A
Sbjct: 381 KHIPFDVLGPEVVEHVKALVLTGDTAPKLRQAVERAPGYDPAALPIVEYKDFEAAVLAAC 440
Query: 340 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 375
+A GD ++LSP CASFD F+NF RG F+ + +
Sbjct: 441 GLAQPGDVVLLSPACASFDRFKNFMERGAAFKRIIY 476
>gi|342215282|ref|ZP_08707932.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
oral taxon 780 str. F0422]
gi|341588668|gb|EGS32053.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
oral taxon 780 str. F0422]
Length = 450
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 194/385 (50%), Gaps = 54/385 (14%)
Query: 21 LLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
++Q K+ V+ E++ A +V IL VTGTNGK+T + + ++L + +VGG
Sbjct: 84 IIQEAKKRNIPVVGEVEIAYEV--SKAPILGVTGTNGKTTTTSLLAEVLKEAKWDVYVGG 141
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+G LSE A + P+ V V E+SSYQ+E +K F +++LN+TPDHL RH
Sbjct: 142 NIGYSLSEQAL-------AVPETGVLVAELSSYQLESIDK-FRTKGAILLNVTPDHLLRH 193
Query: 137 KTMKNYALTKCHLFSHMVNTKLG---LLPFGN---QHLNEAIKGHRFNLAWIGAF-PGVK 189
KTM+ Y K ++F N +LG +L F + + + +KGH ++ G
Sbjct: 194 KTMERYQEAKENIFR---NQELGDWTVLNFDSPIVADMAKRVKGHVLGISQERPVTDGAY 250
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNS 247
D A + AV +++ +H + G HN N LSV+ L +GV VE ++
Sbjct: 251 FDNNTCYAVMQGKAVPIITTKDIH---IPGSHNIENI----LSVIALTYALGVAVEDIHQ 303
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGY 307
I HR++ + R + GVT+ +DSKATN ++T L V++ GG+ K
Sbjct: 304 AIAKFHGVAHRLERI-RTLHGVTYYNDSKATNTDSTIKALESFTS-PLVLIAGGKDKMTD 361
Query: 308 SGVLIW------KTLVNNGLSIPCFAVA-------------NMKDAVNHARRMATNGDAI 348
++ K L+ G + FA A +M++ V+ + R+A +GD +
Sbjct: 362 LKEMMELVKTNVKELILIGEAAQRFAEAAVKVGVPHIHRCESMEETVSLSARIAEDGDVV 421
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+LSP CASFD + FE RG F+ L
Sbjct: 422 LLSPACASFDWYARFEDRGDHFRRL 446
>gi|294792042|ref|ZP_06757190.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
6_1_27]
gi|294457272|gb|EFG25634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
6_1_27]
Length = 456
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 178/369 (48%), Gaps = 38/369 (10%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A +V I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVELAYEV--SKSPIVAVTGTNGKTTTTTLLTKVLEGSGKPVHVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E KYF P +++LN+TPDHL RHKTM+NY
Sbjct: 150 VAY-------SMPAGGFLVAELSSYQLETI-KYFRPIGAIMLNITPDHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + ++T +L + + + ++ I V+ +
Sbjct: 202 AKERIFENQLSTDYLVLNIDDPVVADMEHRSSSHILKISQKKAVENGAYYADGQCYIAKD 261
Query: 205 GVVS-QLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQI 261
GV + ++ + G HN N L+V+ L +GV VE ++ I HR++
Sbjct: 262 GVAKFVIGNEDIHIPGSHNIEN----ILTVIALSHALGVPVETIHRIISEFHGVEHRLER 317
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V + I G+T+ +DSKATN+++ L + ++L GG K
Sbjct: 318 V-KTIDGITFYNDSKATNVDSVVKALESFD-QQVILLAGGHDKMTPLEDFMELVKEKTKA 375
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
F ++T P + +MK+AV ++A GD ++LSP C+SFD +
Sbjct: 376 VIFMGEAADRFETAAKEAGVKPIYRALSMKEAVEQGYKLAETGDIVLLSPACSSFDWYSC 435
Query: 363 FEHRGMVFQ 371
FE RG F+
Sbjct: 436 FEERGDDFK 444
>gi|373115289|ref|ZP_09529465.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371670581|gb|EHO35660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 462
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 181/396 (45%), Gaps = 77/396 (19%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ QV P K +AVTG++GK+T T + ++L G +VGGN+G PL
Sbjct: 98 ERGSTITSEMEVFFQVCP--CKTIAVTGSDGKTTTTTIIAELLKAAGQSVYVGGNIGKPL 155
Query: 83 SEAAFHCIALPSSK---PKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
LP P+ VAV+E+SS+Q+ + P ++VV NL P+HL+ HK+M
Sbjct: 156 ---------LPDVDGMVPE-DVAVLELSSFQLMTMEQ--SPDIAVVTNLAPNHLDVHKSM 203
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+ Y K ++F+H L +L NQ NE +G F ++ G E + F
Sbjct: 204 EEYIAAKENIFTHQGADGLLVL---NQD-NEITRG--FAVSARGRVTRFSRREELEQGVF 257
Query: 200 -------------EVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGV-DVE 243
E P L L N+ + G HN N AA+ AL L D V D
Sbjct: 258 VRDGAIWVRNAMHERPV------LYLENILLPGEHNIENYMAAIGALDGLVPDQVVRDFA 311
Query: 244 ALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303
A + +E HR+++V R GV + +DS A++ T GL K V++ GG
Sbjct: 312 AKFAGVE------HRIELV-RTRNGVRYYNDSIASSPSRTIAGLRSFH-QKVVLIAGGYD 363
Query: 304 K------FGYSGVLIWKTLVNNGLSIP---------------CFAVANMKD---AVNHAR 339
K G V K LV G + P + KD AV A
Sbjct: 364 KHIPFDVLGPEVVEHVKALVLTGDTAPKLRQAVERAPGYDPAALPIVEYKDFEAAVLAAC 423
Query: 340 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 375
+A GD ++LSP CASFD F+NF RG F+ + +
Sbjct: 424 GLAQPGDVVLLSPACASFDRFKNFMERGAAFKRIIY 459
>gi|375264444|ref|YP_005021887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
EJY3]
gi|369839768|gb|AEX20912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
EJY3]
Length = 437
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 176/378 (46%), Gaps = 50/378 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQSVLSQGIPVVGDIELFAWAVTKPV--VAITGSNGKSTVTDLTGVMAKAAGLSVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLDQEADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG----AFPGVKIDTE 193
+M +Y K +F+H L N+ E H + G AF G++ D E
Sbjct: 193 SMADYRSAKLRIFNH------AELAVVNRDDQETFPDHDMPVVTFGCDEQAF-GLETDGE 245
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
KT + + S +K++G+HN N V L++L GVD +T++
Sbjct: 246 -KTWLLDHGQRVIASD----ELKLVGKHNLANVLVV-LALLKA-AGVDCHNTLNTLKNYT 298
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHKCVILLGGQAKFGYSGVL 311
HR Q+V D QGV WV+DSKATN+ +T L ++L G K +L+GG K G
Sbjct: 299 GLTHRCQVV-EDNQGVKWVNDSKATNIASTMAALSGLELTG-KLYLLVGGVGK-GADFTP 355
Query: 312 IWKTLVNNGLSIPCFA---------------VANMKDAVNHARRMATNGDAIVLSPGCAS 356
+ L + CF M+D + GD ++LSP CAS
Sbjct: 356 LEPIFATLNLQLCCFGKDGDEFLPLHPSATRFDTMEDVIQQISSQLKAGDMVMLSPACAS 415
Query: 357 FDEFRNFEHRGMVFQELA 374
FD+F NF RG F LA
Sbjct: 416 FDQFDNFMARGDAFAALA 433
>gi|426411403|ref|YP_007031502.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. UW4]
gi|426269620|gb|AFY21697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. UW4]
Length = 448
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 169/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLRDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGKGAEFKDLRDPVAANCRAVVLMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P A++ +AV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRAASLVEAVERCRAAAQPGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|329298857|ref|ZP_08256193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Plautia stali
symbiont]
Length = 439
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 174/370 (47%), Gaps = 81/370 (21%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P + L S + V V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP-------ALTLLKSPAQLYV-VL 158
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 159 ELSSFQLET-TYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENADICVVNADDG 217
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ G K+
Sbjct: 218 MTMPVRGADRRCVSFGIDVGDYHLNQ-----QQGSTWL-RVKGEKV-------------- 257
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP---PHRMQI 261
L MK++G+HNY NA A ++I L S+++ L T PHR Q+
Sbjct: 258 -----LNTDEMKLVGQHNYTNALAALALADAVNI-----PLASSLKALTTYSGLPHRFQL 307
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNG 320
VH + GV W++DSKATN+ +T L L+ + +LLGG K G + + L +
Sbjct: 308 VH-EAHGVRWINDSKATNVGSTEAALNGLQVKGTLWLLLGGDGK-GADFTPLARYLQGDN 365
Query: 321 LSIPCF------------AVANMKDAVNHA-RRMATN---GDAIVLSPGCASFDEFRNFE 364
+ + CF AVA D + ++A GD ++LSP CAS D+FRNFE
Sbjct: 366 VRLFCFGRHGDALAALRPAVATCTDTLEQGMTQIAAQVQAGDMVLLSPACASLDQFRNFE 425
Query: 365 HRGMVFQELA 374
RG F +LA
Sbjct: 426 QRGDRFAQLA 435
>gi|104783455|ref|YP_609953.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
entomophila L48]
gi|95112442|emb|CAK17169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
entomophila L48]
Length = 448
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 168/362 (46%), Gaps = 60/362 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAQAGKRVAVGGNLGTP---------ALDLLDDSVELYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 ---LPF-GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
LP G + + F AF ++D E K +FE + + + +K
Sbjct: 221 SRPLPVEGRPSWSFGLNAPDFK-----AFGLREVDGE-KHLAFEFQTL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN NA A G+ E + + + HR Q V R+ GV W DDSK
Sbjct: 270 IRGAHNQSNALAALALGHA--AGLPFEPMLEALREFKGLAHRCQWV-RERNGVNWYDDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLI 312
ATN+ A + D++G K V++ GG K G +
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGADFAALREPVAQHCRAVVLLGRDAERL 385
Query: 313 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+TL G ++P V + +AV +A GDA++LSP CAS D F+NFE RG +F +
Sbjct: 386 AETL---GDTVPQVRVKTLDEAVQRCAELAQPGDAVLLSPACASLDMFKNFEERGRLFAQ 442
Query: 373 LA 374
A
Sbjct: 443 AA 444
>gi|410451668|ref|ZP_11305670.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira sp.
Fiocruz LV3954]
gi|410014434|gb|EKO76564.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira sp.
Fiocruz LV3954]
Length = 462
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 171/366 (46%), Gaps = 57/366 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ VTGT+GKST + +L + GGNLG P + I+L AV
Sbjct: 103 KIIGVTGTDGKSTTTSLTAHLLRKDFSDLREGGNLGTPFTSFCKKPISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ++ N VSV LNL PDHLERH TM+NY K + + + N L+
Sbjct: 154 LELSSYQLDDSNPLHL-DVSVFLNLAPDHLERHTTMENYFQAKLKI-ADLQNENHFLI-- 209
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
++E IK NLA T A A + + + + ++++
Sbjct: 210 ----VSEKIKESILNLASFRCKLLSFGRTSASDAFLDENSSKIGTSKFVYDISGFHLPGT 265
Query: 224 HNAAVAALSVLGLD-IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
HN A S+L + IG E++ + I + R PHR QI + QG+++++DSK+TNL +
Sbjct: 266 HNGENLAASILAAEAIGGKPESIQAQIPLFRGLPHRFQIAG-EKQGISFINDSKSTNLHS 324
Query: 283 TCTGLMDLKG-HKCVILLGGQAK-------FGYSG------VLI------WKTLVNNGLS 322
G+ K + ++LGG+ K + + VLI W+ + N +
Sbjct: 325 MLAGMSTWKNLDRTCLILGGRPKQEDPRPLYDFLNRKIGCVVLIGEARSFWEEGIRNAIG 384
Query: 323 IPCFAVANMKDAV----------------NHARRMATNGD--AIVLSPGCASFDEFRNFE 364
F+V ++ +A N R+ + + ++V SP CASFD+++NFE
Sbjct: 385 EKLFSVESLNEAFEIFKKGNIVSEPSRPSNRKIRLTNSAEITSVVFSPACASFDQYKNFE 444
Query: 365 HRGMVF 370
RG F
Sbjct: 445 ERGNHF 450
>gi|375254185|ref|YP_005013352.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Tannerella
forsythia ATCC 43037]
gi|363407079|gb|AEW20765.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Tannerella
forsythia ATCC 43037]
Length = 445
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 182/383 (47%), Gaps = 58/383 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G ++SE++FA + ++ + +TG+NGK+T +L G++ + GN+GN
Sbjct: 84 MERGIPIISEIEFAGRYTDATM--ICITGSNGKTTTTLLTYHILKEAGLDVGLAGNVGNS 141
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-TM 139
L AF P + V+E+SS+Q++ N Y F ++V+LN+TPDHL+R++ M
Sbjct: 142 L---AFQVAESPHA-----YYVIELSSFQLD--NMYEFKADIAVLLNITPDHLDRYQHCM 191
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+NY K + + + + + + ++ HR K T + +F
Sbjct: 192 QNYIDAKFRILRNQTEKDAFIYWNDDPIIRKEMERHR-----------PKATTYPFSDTF 240
Query: 200 EVPAVGVVSQLQL-------------HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
G + + Q+ + + G HN +N A ++ LDI E +
Sbjct: 241 HPELKGYIKEKQMIIQTLNGTFTMDQEAIALRGTHNLYNTMAAGIAAKILDI--RDEKIR 298
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
+++ HR+++V R I+GV +++DSKATN+ + L + +IL G
Sbjct: 299 ASLSGFPGVAHRLEMVAR-IRGVDYINDSKATNVNSCWYALQSINTRMVLILGGTDKGND 357
Query: 307 YSGV----------LIWKTLVN-------NGLSIPCFAVANMKDAVNHARRMATNGDAIV 349
YS + LI+ + N +G +M++AVN A R+A GD ++
Sbjct: 358 YSEIEALVLRKVRALIFLGVDNRKLHAFFDGKIARIEDAGSMEEAVNKAYRLAEKGDTVL 417
Query: 350 LSPGCASFDEFRNFEHRGMVFQE 372
LSP CASFD F N+E RG F++
Sbjct: 418 LSPCCASFDLFDNYEDRGDQFKK 440
>gi|357060976|ref|ZP_09121738.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alloprevotella rava
F0323]
gi|355375511|gb|EHG22797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alloprevotella rava
F0323]
Length = 443
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 178/400 (44%), Gaps = 83/400 (20%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
Q+KA G+ V+SE++FA + + K + +TG+NGK+T + + +L G
Sbjct: 80 QVKAAGIP--------VISEIEFAGRYT--NAKTICITGSNGKTTTTSLIYHILQKAGYN 129
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTP 130
+ GN+G AL ++ K V+E+SS+Q++ N Y F ++V+LN+TP
Sbjct: 130 VGLAGNIGKSF--------ALQVAEGKHDWYVIELSSFQLD--NMYDFRADIAVLLNITP 179
Query: 131 DHLERHK-TMKNYALTKCHLFS---------------------HMVNTKLGLLPFGNQHL 168
DHL+R+ M+NY +K + H N+ +L F +
Sbjct: 180 DHLDRYDFKMQNYVNSKMRILQNQRPEDSFIYWAQDEWIPNELHKYNSPARMLEFSDMPK 239
Query: 169 NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228
EA+ NL I ++ SFE + + + + G HN N+
Sbjct: 240 AEAVAYEENNLLKI-----------SQPLSFE---------MDVDELSLPGLHNLRNSMA 279
Query: 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLM 288
AL+ L GV E + + HR++ V D+ GV +++DSKATN++A L
Sbjct: 280 GALATLS--AGVAPEVVREGLSDFPGVEHRLEKVC-DVDGVHYINDSKATNVDACYWALA 336
Query: 289 DLKGHKCVILLGGQAKFGYSGV----------LIWKTLVN-------NGLSIPCFAVANM 331
++ +I+ G Y + L++ N +G +P +M
Sbjct: 337 AMRTPTVLIIGGKDKGNDYKEIAELVKTKCRALVYLGADNKKLHDFFDGFGLPVEDTHSM 396
Query: 332 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
D V R+A GD ++LSP CASFD FRN E RG F+
Sbjct: 397 ADCVKACARLAQKGDTVLLSPCCASFDLFRNMEDRGEQFK 436
>gi|70732386|ref|YP_262142.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
protegens Pf-5]
gi|81174950|sp|Q4K6J1.1|MURD_PSEF5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|68346685|gb|AAY94291.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
protegens Pf-5]
Length = 448
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 172/366 (46%), Gaps = 64/366 (17%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTDQ-LGAEVATVLNISEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
Q + E + F L+ AF G++ + K +FE + + + +K
Sbjct: 216 RQDALTRPLIGEGLPCWTFGLSKPDFKAF-GLREEDGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN NA A G +G+ +A+ + + HR Q V RD+ GV + +DSK
Sbjct: 270 IRGAHNQSNALAALAL--GHAVGLPFDAMLAALRTFAGLEHRCQWV-RDLDGVAYYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLI 312
ATN+ A + D++G K V++ GG K G I
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KIVLIAGGDGKGADFKDLRGPVAANCRAVILMGRDSDQI 385
Query: 313 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF-- 370
+ + G ++P V ++++AV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 386 GEAI---GDAVPLIRVGSLQEAVEQCRATAQPGDVVLLSPACASFDMFKNYEDRGHQFVR 442
Query: 371 --QELA 374
+ELA
Sbjct: 443 IVEELA 448
>gi|261401755|ref|ZP_05987880.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
lactamica ATCC 23970]
gi|269208133|gb|EEZ74588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
lactamica ATCC 23970]
Length = 445
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 180/382 (47%), Gaps = 53/382 (13%)
Query: 23 QSGKRVMSELDFAAQVI-PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ R K++A+TG+NGK+TV + VG + G++ + GN+G P
Sbjct: 89 QNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP 148
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + K V V+E+SS+Q+E + PT + VLN++ DHL+R+ + +
Sbjct: 149 VLEAEWQ-----REGKKADVWVLELSSFQLE-NTESLRPTAATVLNISEDHLDRYDDLLD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAK 195
YA TK +F G Q LN A+K + W E +
Sbjct: 203 YAHTKDKIFRGD----------GVQVLNADDVFCRAMKRAGREVKWFSLEHEADFWLERE 252
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
T + G + ++ + G H + A V A L +G+ L ++ +
Sbjct: 253 TGRLK---QGDEDLIATQDIPLQGLH--NAANVMAAVALCEAVGLPRNELLEHVKTFQGL 307
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------- 304
PHR++ + + GV ++DDSK TN+ AT + L+ + ++LGG K
Sbjct: 308 PHRVEKIG-EKNGVVFIDDSKGTNVGATVAAIAGLQ-NPLFVILGGMGKGQDFTPLRDAL 365
Query: 305 ---------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
G I + L GL++ A +++AV A A GD ++LSP CA
Sbjct: 366 KDKAKGVFLIGVDAPQIRRDLDGCGLNMT--DCATLEEAVQTAYARAEAGDIVLLSPACA 423
Query: 356 SFDEFRNFEHRGMVFQELAFSA 377
SFD F+ + HR VF E AF A
Sbjct: 424 SFDMFKGYAHRSEVFIE-AFKA 444
>gi|417780413|ref|ZP_12428175.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
weilii str. 2006001853]
gi|410779455|gb|EKR64071.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
weilii str. 2006001853]
Length = 463
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 172/388 (44%), Gaps = 94/388 (24%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ VTGT+GKST + V +L + GGNLG P + I+L AV
Sbjct: 103 KIIGVTGTDGKSTTTSLVSHLLKKDFSDLKEGGNLGVPFTSFCKESISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHL-------FSHMVNT 156
+E+SSYQ+E VSV LNL DHLERHKTM+NY K + S +V+
Sbjct: 154 LELSSYQLEDSFPLHL-NVSVFLNLAADHLERHKTMENYFRAKLKIADLSNRDHSLIVSE 212
Query: 157 KL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K+ LL FG +EA+ +E +T+ F V
Sbjct: 213 KIREKILNSSSVRCKLLSFGRTTTSEAVLDEN--------------SSEIRTSKF----V 254
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+S+ L G HN N A A L+ IG E++ S I + + PHR QI
Sbjct: 255 YDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQSQIPLFKGLPHRFQIAG- 306
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK---------FGYSGV---- 310
+ QG+++++DSK+TNL + G+ K + ++LGG+ K F G+
Sbjct: 307 ERQGISFINDSKSTNLHSMLAGMSTWKNLDQTCLILGGRPKQEDPKPLYDFLMRGIGSVF 366
Query: 311 ------LIWKTLVNNGLSIPCFAVANMKDAVNHARR----------------MATNG--- 345
+W+ + + F+V N+ DA + ++ NG
Sbjct: 367 LIGEARSVWEIGIRKVVGDRLFSVENLNDAFDLFKKGNVISKTVYGNVLKRIRLPNGAEI 426
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQEL 373
AIV SP CASFD+++NFE RG F L
Sbjct: 427 GAIVFSPACASFDQYKNFEERGNHFLSL 454
>gi|303230748|ref|ZP_07317495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica ACS-049-V-Sch6]
gi|302514508|gb|EFL56503.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica ACS-049-V-Sch6]
Length = 454
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 122/370 (32%), Positives = 176/370 (47%), Gaps = 46/370 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A V I L VTGTNGK+T T + Q++ G+ VGGN+G+ LSEAA+
Sbjct: 95 VVSEVELAYDVCKSPI--LGVTGTNGKTTTTTLLTQVMESTGLPVKVGGNIGDSLSEAAY 152
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
H P+ V E+SSYQ+E K FCP ++VLN+TPDHL RHKTM+NYA K
Sbjct: 153 HM-------PEGGYLVAELSSYQLETI-KSFCPLGAIVLNVTPDHLARHKTMENYAAAKA 204
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT----EAKT--ASFEV 201
+F + +L + + K + I K+D+ E T A +
Sbjct: 205 RIFMNQNPENFVVLNDDDPIVRAMKKDAHSKVLSISQHH--KVDSGAYFEGNTCYAVLDG 262
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
A V+ +H + G HN N + A+ L +GV+VE + TIE HR++
Sbjct: 263 KATPVIDTEHIH---IKGSHNIEN--ILAVIALTYALGVEVEHIKHTIEQFHGVEHRLER 317
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V VT+ +DSKATN ++ L D ++L GG K
Sbjct: 318 V-TTFHDVTFYNDSKATNTDSVVKAL-DAFDKPVILLAGGHDKMTPLEDFMNIVKAHTKE 375
Query: 305 ---FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
G + V G+ +MK+AV ++A GD ++LSP C+SFD +
Sbjct: 376 VIFMGEAADRFESVAVKMGVQ-HIHRAQSMKEAVALGYQLAKAGDIVLLSPACSSFDWYS 434
Query: 362 NFEHRGMVFQ 371
FE RG F+
Sbjct: 435 CFEERGEDFK 444
>gi|108804332|ref|YP_644269.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rubrobacter
xylanophilus DSM 9941]
gi|118595689|sp|Q1AVX1.1|MURD_RUBXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|108765575|gb|ABG04457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rubrobacter
xylanophilus DSM 9941]
Length = 440
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 165/350 (47%), Gaps = 39/350 (11%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++ AVTGTNGK+TVV +L G+ V GN L+ C+ + V V
Sbjct: 103 RVAAVTGTNGKTTVVDMARHILRVAGVAHAVAGNSWRALT----GCL---EEVRRAGVLV 155
Query: 104 VEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+EVSS+Q+ +P F V+ +LN+ PDHL H + + YA K +F L LL
Sbjct: 156 LEVSSFQLHHLPPPGF--EVAALLNVRPDHLNWHSSFEEYARDKLRVFGGQGPGDLALLS 213
Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ A G R + +G + +T + + + + +L G HN
Sbjct: 214 ADDPICRRAAGGLRAEVVLVG-----EGETGVRDGRLLLRGEFLAGEREL---GFAGGHN 265
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
NA AA + +G +EA+ + R PHRMQ+V + GVT++DDSKATN A
Sbjct: 266 LKNALFAAAAAA--RLGAGLEAIREALRGYRLKPHRMQVVAEE-GGVTYIDDSKATNPAA 322
Query: 283 TCTGLMDLKGHKCVILLGGQAK-FGYSGVLI----WKTLVNNGLSIPCFA---------- 327
L+ L G V++LGG K + VL + +V G + P
Sbjct: 323 VAAALLSLGGRPAVLILGGSEKETDFEEVLPHLGGCRAVVCQGEAGPRLRDFLSERWGGE 382
Query: 328 ---VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
++ AV ARR+A GDA++LSPGCASFD+F +E RG F LA
Sbjct: 383 VVLAGDLASAVEAARRLARPGDAVLLSPGCASFDQFSGYEERGEAFARLA 432
>gi|359727430|ref|ZP_09266126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira weilii
str. 2006001855]
Length = 463
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 173/388 (44%), Gaps = 94/388 (24%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ VTGT+GKST + V +L + GGNLG P + I+L AV
Sbjct: 103 KIIGVTGTDGKSTTTSLVSHLLKKDFSDLKEGGNLGVPFTSFCKESISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHL-------FSHMVNT 156
+E+SSYQ+E VSV LNL DHLERHKTM+NY K + S +V+
Sbjct: 154 LELSSYQLEDSFPLHL-NVSVFLNLAADHLERHKTMENYFRAKLKIADLSNRDHSLIVSE 212
Query: 157 KL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K+ LL FG +EA+ +E +T+ F V
Sbjct: 213 KIREKILNSSSVRCKLLSFGRTTTSEAVLDEN--------------SSEIRTSKF----V 254
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+S+ L G HN N A A L+ IG E++ S I + + PHR QI
Sbjct: 255 YDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQSQIPLFKGLPHRFQIAG- 306
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK---------FGYSGV---- 310
+ QG+++++DSK+TNL + G+ K + ++LGG+ K F G+
Sbjct: 307 ERQGISFINDSKSTNLHSMLAGMSTWKNLDQTCLILGGRPKQEDPKLLYDFLMRGIGSVF 366
Query: 311 ------LIWKTLVNNGLSIPCFAVANMKDAV---------------NHARRMA-TNG--- 345
+W+ + + F+V N+ DA N +R+ NG
Sbjct: 367 LIGEARSVWEIGIRKVVGDRLFSVENLNDAFDLFKKGNVISKTVYGNVLKRIRLPNGAEI 426
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQEL 373
AIV SP CASFD+++NFE RG F L
Sbjct: 427 GAIVFSPACASFDQYKNFEERGNHFLSL 454
>gi|402496530|ref|YP_006555790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
endosymbiont of Onchocerca ochengi]
gi|398649803|emb|CCF77973.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Wolbachia
endosymbiont of Onchocerca ochengi]
Length = 446
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 179/370 (48%), Gaps = 61/370 (16%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ S+++ + ++ K++ VTGTNGKST + +G +L G + VGGNLG P+ +
Sbjct: 96 KIKSDIELFLEGKAKNQKVIGVTGTNGKSTTTSLIGHILKSAGKKVAVGGNLGVPVFDL- 154
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
++ V+E SS+Q+E+ N+ ++V+LN+TPDH++RH +M+NY K
Sbjct: 155 ---------NRNTEICVIEFSSFQLELINEVNLD-IAVLLNITPDHIDRHGSMENYIAIK 204
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L + +G + I FN F G K+ A + SF+ P G+
Sbjct: 205 SKLINGSRVAAIG--------CDSEITAGIFN-----KFTGNKVPISA-SMSFQYPDTGI 250
Query: 207 VSQLQLH--NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+L+ H ++K+ N N A AA +V L + VD + I+ HR +++ +
Sbjct: 251 HLELENHVSDVKINLISNSENVA-AACTVCKL-LRVDSNIIIDGIKSFSGLKHRNELLGK 308
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------------F 305
I V +V+DSKATN E++ ++ K ++GG++K
Sbjct: 309 -IANVLFVNDSKATNAESSEKAILSYKN--IYWIVGGKSKDGGIESLRKHFANIKKAFLI 365
Query: 306 GYSGVLIWKTLVNNGLSIPCFAVAN-----MKDAVNHARRMATNGDAIVLSPGCASFDEF 360
G S T+ N + C ++AN K+A+N + ++ SP CASFD++
Sbjct: 366 GESTEAFANTMENKIDFVKCCSLANAFKLAFKEAINSKEEI-----TVLFSPACASFDQW 420
Query: 361 RNFEHRGMVF 370
+NFE RG F
Sbjct: 421 KNFEERGEAF 430
>gi|120437105|ref|YP_862791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
KT0803]
gi|158512450|sp|A0M529.1|MURD_GRAFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|117579255|emb|CAL67724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
KT0803]
Length = 445
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 187/394 (47%), Gaps = 64/394 (16%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G V+SE++FA+ + ++ +TG+NGK+TV V +L GI +
Sbjct: 76 KAPMIVKLKEKGISVVSEIEFASWF--SEVPVIGITGSNGKTTVTNLVQHLLKEGGINSG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+GN ++ ++ V+E+SS+Q++ K F P ++++ N+TPDHL
Sbjct: 134 MGGNIGNSYAKMV--------AEEMHDWFVLELSSFQLDGIEK-FKPHIAILTNITPDHL 184
Query: 134 ERHK-TMKNYALTKCHL---------FSHMVNTK-----LGLLPFGNQHLNEAIKGHRFN 178
+R+ ++NY +K + F + + K L P +Q L +I+ N
Sbjct: 185 DRYDYKLENYIASKFRIAENQTEEDYFIYDADDKNITDWLEKNPVRSQKLPFSIEKKIEN 244
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
A+I I F +P S+L L G+HN NA A S++ +
Sbjct: 245 GAYI---ENENIVVTINNTKFTMPT----SELALQ-----GKHNAKNAMAA--SMVSQLL 290
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
+ + + ++ + HR++ V + I V +++DSKATN+ AT L ++ IL
Sbjct: 291 RIRKQTIRESMASFQGVEHRLEKVLK-INNVLYINDSKATNVNATFYALESMESETVWIL 349
Query: 299 LGGQAKFGYSGVLIWKTLVNNGL-SIPCFAVAN-------------------MKDAVNHA 338
G Y +L LVN + +I C V N M +AV A
Sbjct: 350 GGVDKGNVYDDLL---PLVNEKVKAIICLGVDNEKIVSAFGNIVDTMVETTSMSEAVQMA 406
Query: 339 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
R++ GD ++LSP CASFD F N+E RG F+E
Sbjct: 407 YRLSDKGDNVLLSPACASFDLFENYEDRGRQFKE 440
>gi|154494018|ref|ZP_02033338.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
43184]
gi|154086278|gb|EDN85323.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parabacteroides
merdae ATCC 43184]
Length = 453
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 186/382 (48%), Gaps = 42/382 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++A
Sbjct: 84 KAPIIKKLKEKGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTMLTYHILRQAGVDAG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 142 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----- 186
L+R+ M+NY K + + + + + I R A + F
Sbjct: 192 LDRYNYEMQNYVDAKFRIIRNQTAEDAFIFWNDDPIIAREI-AKRHPQATLYPFAETHEA 250
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK TE K E + L + + G HN +N+ + ++ +DI E L
Sbjct: 251 GVKGYTEDKKIIIETSNGTFTMEEDL--LALSGTHNLYNSLASGIASKLVDIHD--ENLR 306
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
+++ HR++ V R ++GV +++DSKATN+ + L + +IL G
Sbjct: 307 ASLSDFTGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALQSMTTPLVLILGGTDKGND 365
Query: 307 YSGV----------LIWKTLVNNGL------SIPCFAVA-NMKDAVNHARRMATNGDAIV 349
YS + LI+ + N L +P A +M++AV A ++A GD ++
Sbjct: 366 YSEIEELVKKKVHALIFLGVDNAKLHGFFDGKVPVIEDARSMEEAVAKAYKLAEKGDTVL 425
Query: 350 LSPGCASFDEFRNFEHRGMVFQ 371
LSP CASFD F+++E RG F+
Sbjct: 426 LSPCCASFDLFKSYEDRGDQFK 447
>gi|418465291|ref|ZP_13036228.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Aggregatibacter actinomycetemcomitans RhAA1]
gi|359756223|gb|EHK90382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Aggregatibacter actinomycetemcomitans RhAA1]
Length = 434
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 186/399 (46%), Gaps = 57/399 (14%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA LQ+G V+ +++ + + + I +A+TG+NGKSTV
Sbjct: 61 WLLESDLIVISPGLAVKTPEIQTALQAGVEVVGDIELFCREVDKPI--VAITGSNGKSTV 118
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G+ +GGN+G P AL + + V+E+SS+Q+E Y
Sbjct: 119 TTLVAEMAKAAGLSVGMGGNIGIP---------ALSLLNQQHDLYVLELSSFQLE--TTY 167
Query: 118 FCPTV-SVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL-LPFGNQHLNEA 171
V + VLN+T DH+ R+ +++Y K ++++H ++N + L LP + +
Sbjct: 168 SLKAVAATVLNVTEDHMNRYVDLQDYRHAKLNIYNHCQTAVINVEDALTLPTTQRPQKQV 227
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
G W + TE V L MK+ GRHNY N A+A++
Sbjct: 228 SFGESNADYW--------LKTENNKTYLMAYDEAV---LACDEMKLTGRHNYMN-ALASI 275
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L G+++ + + + HR Q+ H GV W++DSKATN+ +T L L+
Sbjct: 276 A-LAQAAGINLTGIRTALREFGGLDHRFQVAHI-ADGVRWINDSKATNVGSTIAALTGLQ 333
Query: 292 -GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCF-----------AVANMKDAVNHA- 338
K +LLGG K G + + + + CF + + + D + HA
Sbjct: 334 VAGKLHLLLGGDGK-GADFSELARLINQPHIYCYCFGRDGKQLAALSSQSQLFDTMEHAI 392
Query: 339 ---RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
R GD ++LSP CAS D+F FE RG F LA
Sbjct: 393 AAIRPQLQAGDMVLLSPACASLDQFSCFEARGDEFTRLA 431
>gi|294101816|ref|YP_003553674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aminobacterium
colombiense DSM 12261]
gi|293616796|gb|ADE56950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
colombiense DSM 12261]
Length = 457
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 176/374 (47%), Gaps = 44/374 (11%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ E+DF A I K++ VTG+NGKST +G +L G + V GN+GNPLS
Sbjct: 95 GIPVIGEIDFVAPHIKG--KVIGVTGSNGKSTTTMLIGHLLKKYGYKTAVAGNIGNPLS- 151
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
H + V+E+SS+Q+ + V++V NL PDH++ H + NY
Sbjct: 152 --LH------ASQNLDFIVIELSSFQLYWAH-LLKSHVAIVTNLAPDHIDWHGSFTNYLK 202
Query: 145 TKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
K L ++ + L + K +L W G P K T+A E A
Sbjct: 203 AKARLVRLQEPGHWAVVQNRDVDALQLSGKSAVASLYWEGQEPVHK--TDAYICMGEQEA 260
Query: 204 VGVVSQLQL----HNMKVMGRHNYHNAAVAALS-VLGLDIGVDVEALNSTIEILRTPPHR 258
++ +L ++ ++GRHN N A+ A + +LG GV L + PHR
Sbjct: 261 WLSYNKKELLFDYRDVDLIGRHNLENLAMTASALILG---GVPCSNLTKQLSDFIPLPHR 317
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGVL------ 311
V +I GV ++DDSK TN+ A+ T L + G K V++LGGQ K YS +
Sbjct: 318 CTFV-AEINGVRYIDDSKGTNVAASATALTSIHGPK-VVILGGQGKGEDYSPLAEAVKKE 375
Query: 312 --------IWKTLVNNGLSIPCFA----VANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
K + L FA V +M+DAV A ++ G+ ++LSP C S+D
Sbjct: 376 ARVAIVLGAEKKPIVTALEGAGFARHIEVDSMEDAVKAAMALSLPGETVLLSPACTSWDM 435
Query: 360 FRNFEHRGMVFQEL 373
+ +++ RG FQ L
Sbjct: 436 YPSYKKRGEHFQHL 449
>gi|398841925|ref|ZP_10599130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM102]
gi|398107034|gb|EJL97044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM102]
Length = 448
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 169/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +KV
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V R++ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRNFAGLEHRCQWV-RELNGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAEFKDLRDPVAANCRAVILMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P V ++ +AV R +A GDA++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRVGSLIEAVEQCRTIAEKGDAVLLSPACASFDMFKNYEDRGHQF 440
>gi|336417333|ref|ZP_08597657.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
3_8_47FAA]
gi|335936079|gb|EGM98019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides ovatus
3_8_47FAA]
Length = 444
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 186/382 (48%), Gaps = 54/382 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GIAKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYS 308
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYT 357
Query: 309 GV----------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVL 350
+ L++ L N L +P V MKDAV A +A G+ ++L
Sbjct: 358 EIEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYELAKKGETVLL 417
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CASFD F+++E RG F+E
Sbjct: 418 SPCCASFDLFKSYEDRGDQFKE 439
>gi|387879102|ref|YP_006309405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
parasanguinis FW213]
gi|419800618|ref|ZP_14325891.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis F0449]
gi|385694552|gb|EIG25147.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis F0449]
gi|386792557|gb|AFJ25592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
parasanguinis FW213]
Length = 449
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 180/370 (48%), Gaps = 42/370 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + +V V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASQVA-------QTATEKEVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + I G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTIEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ V ++ + V G HN N A+A ++V + GV+ E + T+ H
Sbjct: 260 KFKGEVV-----MRADELGVPGSHNVEN-ALATIAVAKVR-GVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI----- 312
R+Q V +IQGV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPHITG 371
Query: 313 WKTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
K +V G S +P A++ DA A +A+ GD ++LSP AS+D +
Sbjct: 372 LKEMVILGESAPRVKRAADKAGVPYVDAADVADATKKAFDLASPGDVVLLSPANASWDMY 431
Query: 361 RNFEHRGMVF 370
NFE RG F
Sbjct: 432 PNFEVRGDEF 441
>gi|301310866|ref|ZP_07216795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
20_3]
gi|300830929|gb|EFK61570.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
20_3]
Length = 445
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 185/401 (46%), Gaps = 80/401 (19%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 76 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 134 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNT---------------------KLGLLPFGNQHLNE 170
L+R+ M+NY K + + K L PF H N
Sbjct: 184 LDRYNYEMQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPKATLYPFAETHEN- 242
Query: 171 AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230
+KG+ N V I+T T + E + + G HN +N+ +
Sbjct: 243 GVKGYTEN-------NQVVIETVNGTFTMEQDLLALT-----------GTHNLYNSLASG 284
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290
++ +DI E + +++ HR++ V R ++GV +++DSKATN+ + L +
Sbjct: 285 IASKIVDIHD--EKIRASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSM 341
Query: 291 KGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCF--------------AVANMKDA-- 334
+IL G YS + + LVN + F VAN++DA
Sbjct: 342 TTPVVLILGGTDKGNDYSEI---EELVNKKVHSLIFMGVDNTKLHAFFDGKVANIEDARS 398
Query: 335 ----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
V A +MA GD ++LSP CASFD F+++E RG F+
Sbjct: 399 MEEAVAKAYKMAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 439
>gi|118581691|ref|YP_902941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
propionicus DSM 2379]
gi|158512568|sp|A1AU63.1|MURD_PELPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|118504401|gb|ABL00884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
propionicus DSM 2379]
Length = 446
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 172/371 (46%), Gaps = 44/371 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G ++SE++ A++ I ++A+TGTNGK+T T G + G FVGGN+GNPL
Sbjct: 90 EAGVEIISEIELASRFI--QAPLVAITGTNGKTTATTITGDIFIKNGFRTFVGGNIGNPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
E L S++P +V V E+SS+Q+E + F P V+ +LNL+ DHL+R+ + + Y
Sbjct: 148 IE------LLESAEPVERV-VAEISSFQLEWI-RAFRPAVAALLNLSEDHLDRYASYREY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F + ++ ++ + E +G R L FP + E F
Sbjct: 200 IEAKLRIFENQTADDYAVVNADDELVMEHSRGLRACL-----FPFSR-KQELDEGIFHRE 253
Query: 203 AV------GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ G + ++ G HN N A L L+ E+L + +
Sbjct: 254 GLIVWRHNGREERFPTAGFRLQGVHNLENIMAALACSLLLECR-PTESL-ACVREFEALH 311
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YS------- 308
HRM+ V R++ GV W +DSKATN+ + L ++ GG+ K G YS
Sbjct: 312 HRMEFV-RELNGVRWYEDSKATNVGSVEKALESFDA--ITLIAGGKDKGGSYSPLSRLVR 368
Query: 309 ---------GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G + G A +++AV+ A + G +++SP C+SFD
Sbjct: 369 ERVRHLVLIGEAAGRMQEELGTLTDTRRAATLEEAVSLAAELTAPGGTVLMSPACSSFDM 428
Query: 360 FRNFEHRGMVF 370
FR++E R +
Sbjct: 429 FRDYEERAQRY 439
>gi|325578823|ref|ZP_08148870.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
parainfluenzae ATCC 33392]
gi|325159647|gb|EGC71779.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
parainfluenzae ATCC 33392]
Length = 437
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 186/400 (46%), Gaps = 58/400 (14%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L +G V+ +++ + + I + +TG+NGKSTV
Sbjct: 63 WLLESDIIVISPGLAVKIPEIQTALSAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 120
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M GI+ +GGN+G P AL + V+E+SS+Q+E N
Sbjct: 121 TTLVYEMAKAAGIKVGMGGNIGIP---------ALSLLNEDCDLYVLELSSFQLETTNS- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL---LPFGNQHLNEAIKG 174
+ VLN+T DH++R+ +++Y K ++ + + L L FG N+A K
Sbjct: 171 LKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYYNAETAVVNLEDKLTFGEGE-NQAKK- 228
Query: 175 HRFNLAWIGAFPGVKIDTEAKTAS---FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ +F + D KT + + + V+ L ++GRHNY N + A
Sbjct: 229 -------VVSFAENQADYWLKTENGKQYLMAKEEVI--LPCDEAILVGRHNYMN--ILAA 277
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L + +++EA+ + + HR Q+ ++ GV W++DSKATN+ +T L L
Sbjct: 278 TALAQAVDINLEAIRIALRQFKGLDHRFQLAYQ-TNGVRWINDSKATNVGSTVAALAGLY 336
Query: 292 GHKCV-ILLGGQAKFGYSGVLIWKTLVNNG-LSIPCFA---------------VANMKDA 334
+ +LLGG K L L+N +S CF M+ A
Sbjct: 337 VEGTLHLLLGGDGKGADFSEL--ADLINQPHISTYCFGRDGKQLAALSSQSHLFETMQQA 394
Query: 335 VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
++ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 395 ISFLRPRLKSGDMVLLSPACASLDQFTSFEKRGEEFTRLA 434
>gi|339009181|ref|ZP_08641753.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
laterosporus LMG 15441]
gi|421873582|ref|ZP_16305194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
laterosporus GI-9]
gi|338773659|gb|EGP33190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
laterosporus LMG 15441]
gi|372457369|emb|CCF14743.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
laterosporus GI-9]
Length = 457
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 175/373 (46%), Gaps = 49/373 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A ++ ++ +TG+NGK+T T VG +L+ ++A VGGN+G L
Sbjct: 96 VITEVELAYRL--SKAPLIGITGSNGKTTTTTLVGLILHAASVDAIVGGNIGTVL----- 148
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
C KP Q V E+SS+Q+ + F P ++ +LNL P HL+ H + + Y KC
Sbjct: 149 -CSLAEEMKPD-QYLVAELSSFQL-MGTDTFRPHIATILNLYPAHLDYHHSFEEYTKAKC 205
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV--- 204
+F++ +LP+ ++ + + + R + + V I E +F +
Sbjct: 206 KIFANQTEEDYAVLPYDHEPVMKVCQNIRAKVFY------VSIKQEVPCGAFIKDGIVYF 259
Query: 205 ----GVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
G + + ++ + + G N NA A V+ G D +A+ + HR+
Sbjct: 260 KNEDGKLDEIMKATEISLPGEFNQENALAAI--VMSKLAGADYDAMKHVLRSFSGVEHRL 317
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------------- 304
+ V I GV + ++SKATN EA G+ K V++ GG +
Sbjct: 318 EYVDT-IAGVKYYNNSKATNSEAAIRGIEAFK-EPVVLIAGGLDRGVDFAELVPPLKNKV 375
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
+G + ++ K G+ + FAV + AV A +A D ++LSP CAS+D
Sbjct: 376 KAIITYGQTSPILQKRAEEAGIELR-FAVDTVDSAVKQAAAIAEANDVVLLSPACASWDM 434
Query: 360 FRNFEHRGMVFQE 372
F ++E RG +F++
Sbjct: 435 FPSYEVRGSMFKD 447
>gi|416999197|ref|ZP_11939866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
parvula ACS-068-V-Sch12]
gi|333977350|gb|EGL78209.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
parvula ACS-068-V-Sch12]
Length = 456
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 178/369 (48%), Gaps = 38/369 (10%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A +V I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVELAYEV--SKSPIVAVTGTNGKTTTTTLLTKVLEGSGKPVHVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E KYF P +++LN+TPDHL RHKTM+NY
Sbjct: 150 VAY-------SMPAGGFLVAELSSYQLETI-KYFRPIGAIMLNITPDHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + ++T +L + + + ++ I V+ +
Sbjct: 202 AKERIFENQLSTDYLVLNIDDPVVADMEHRSPSHILKISQKKAVENGAYYADGQCYIAKD 261
Query: 205 GVVS-QLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQI 261
GV + ++ + G HN N L+V+ L +GV VE ++ I HR++
Sbjct: 262 GVAKFVIGNEDIHIPGSHNIEN----ILTVIALSHALGVPVETIHRIISEFHGVEHRLER 317
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V + I G+T+ +DSKATN+++ L + ++L GG K
Sbjct: 318 V-KTIDGITFYNDSKATNVDSVVKALESFD-QQVILLAGGHDKMTPLEDFMELVKEKTKA 375
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
F ++T P + +MK+AV ++A GD ++LSP C+SFD +
Sbjct: 376 VIFMGEAADRFETAAKEAGVKPIYRALSMKEAVEQGYKLAETGDIVLLSPACSSFDWYSC 435
Query: 363 FEHRGMVFQ 371
FE RG F+
Sbjct: 436 FEERGDDFK 444
>gi|258511259|ref|YP_003184693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257477985|gb|ACV58304.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 458
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 185/388 (47%), Gaps = 61/388 (15%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+++ ++++++ A+ R I A+TG+NGK+T T VG+ML G V GN
Sbjct: 94 IAELIKAAHVIVTDVEIASWFERR--PIYAITGSNGKTTTTTLVGEMLKASGYHPIVAGN 151
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P+ + + P + V+EVSS+Q++ F P +LN P HL+ H
Sbjct: 152 IGTPVCD----VVDQPG-----DLLVLEVSSFQLD-GTHTFHPRGGALLNFYPAHLDYHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE------------AIKGHRFNLAWIGAF 185
T + Y K LF++ + +L + + + +++G F+ +G
Sbjct: 202 TYEAYQQAKWKLFANQTPDDVAILNWDQALVRDRAGELAARVRGFSLEGAPFDEG-VGVI 260
Query: 186 PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
G + + + +P V Q+ L GRHN NAA AA L VEA+
Sbjct: 261 DGALVAVRGRERTPILP----VDQVALP-----GRHNLQNAAAAAALALAAG--ASVEAV 309
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF 305
+ + HR++ V R++ GV + +DSKATN +A L + + V+ + G
Sbjct: 310 ARVLATFQGVEHRLEFV-REVSGVRYYNDSKATNPDAARQALRSFE--RGVVWIAGGLDR 366
Query: 306 GYS--------------GVLIWKT-------LVNNGLSIPCFAVANMKDAVNHARRMATN 344
G S VL+ +T L G+S FA A+M++AV A RMA
Sbjct: 367 GISFDPLLPDISGRVRAAVLLGETKEKLREVLARAGVSTCAFA-ASMEEAVREASRMAEP 425
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQE 372
GD ++LSP CAS+D F ++E RG +F+E
Sbjct: 426 GDVVLLSPACASWDMFPSYEVRGSMFKE 453
>gi|423339277|ref|ZP_17317018.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
distasonis CL09T03C24]
gi|409231179|gb|EKN24036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
distasonis CL09T03C24]
Length = 441
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/401 (27%), Positives = 185/401 (46%), Gaps = 80/401 (19%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 72 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 129
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 130 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 179
Query: 133 LERHK-TMKNYALTKCHLFSHMVNT---------------------KLGLLPFGNQHLNE 170
L+R+ M+NY K + + K L PF H N
Sbjct: 180 LDRYNYEMQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPKATLYPFAETHEN- 238
Query: 171 AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230
+KG+ N V I+T T + E + + G HN +N+ +
Sbjct: 239 GVKGYTEN-------NQVVIETVNGTFTMEQDLLALT-----------GTHNLYNSLASG 280
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290
++ +DI E + +++ HR++ V R ++GV +++DSKATN+ + L +
Sbjct: 281 IASKIVDIHD--EKIRASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSM 337
Query: 291 KGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCF--------------AVANMKDA-- 334
+IL G YS + + LVN + F VAN++DA
Sbjct: 338 TTPVVLILGGTDKGNDYSEI---EELVNKKVHSLIFMGVDNTKLHAFFDGKVANIEDARS 394
Query: 335 ----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
V A +MA GD ++LSP CASFD F+++E RG F+
Sbjct: 395 MEEAVAKAYKMAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 435
>gi|398795215|ref|ZP_10555130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea sp. YR343]
gi|398207046|gb|EJM93802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea sp. YR343]
Length = 438
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 169/369 (45%), Gaps = 80/369 (21%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP---------ALTLLKSPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LNLT DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNLTEDHMDRYPLGMQQYRAAKLRIYENASVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGVDQRCVSFGINLGDYHLNQ-----QQGSTWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--GVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A ++I ++AL + + HR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVNIPRASSLKALTTFTGL----AHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGL 321
H + +GV W++DSKATN+ +T L L+ + +LLGG K L + L + +
Sbjct: 308 H-EAKGVRWINDSKATNVGSTEAALNGLQVKGTLWLLLGGDGKSADFSPLA-RYLQGDNV 365
Query: 322 SIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 365
+ CF M+ A+ GD ++LSP CAS D+FRNFE
Sbjct: 366 KLFCFGRDGDALAALRPEIATRTETMQQAMTQIAAQVKAGDMVLLSPACASLDQFRNFEQ 425
Query: 366 RGMVFQELA 374
RG F +LA
Sbjct: 426 RGDQFAQLA 434
>gi|308185657|ref|YP_003929788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea vagans
C9-1]
gi|308056167|gb|ADO08339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
C9-1]
Length = 438
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 167/352 (47%), Gaps = 46/352 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP----ALSLLQSPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + VLN+T DH++R+ M+ Y K ++ N ++ ++
Sbjct: 158 ELSSFQLETTHS-LKAAAATVLNVTEDHMDRYPLGMQQYRAAKLRVYE---NAQICIVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGA-FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G F ++ + + V V L MK+ G+HN
Sbjct: 213 ADDALTMPVRGADKRCVSFGVDFGDYHLNKQQGSIWLRVKGEKV---LNTAEMKMAGQHN 269
Query: 223 YHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y NA A +GL + AL HR Q+VH QGV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRASSLAALTQ----FNGLAHRFQLVHEH-QGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA----------- 327
+T L L+ + +L+GG K ++ ++ W L + + + CF
Sbjct: 325 GSTEAALNGLQVQGTLWLLMGGDGKSADFTPLIPW--LQGDNVRLYCFGRDGDALAALRP 382
Query: 328 -----VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ GD ++LSP CAS D+FRNFE RG F +LA
Sbjct: 383 DIAVRTETMRQAMEQIAPQVKAGDMVLLSPACASLDQFRNFEQRGEQFAQLA 434
>gi|108763559|ref|YP_633745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
DK 1622]
gi|118595667|sp|Q1D0S8.1|MURD_MYXXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|108467439|gb|ABF92624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
DK 1622]
Length = 455
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 173/381 (45%), Gaps = 53/381 (13%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V E++ A +++ + + +TGTNGKST G + FVGGNLG P S
Sbjct: 93 AGVAVWGEVELAGRML-SGVPLFGITGTNGKSTTTALTGTLFASGDKRTFVGGNLGRPFS 151
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
EAA S + VVE+SSYQ+E + P + +LNLTPDH++R+ + Y
Sbjct: 152 EAAM-------SPGDWDALVVELSSYQLE-GIRTLRPRGAAILNLTPDHIDRYPSHAAYG 203
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQH------LNEAIKGHRFNLAWIG-------AFPGVKI 190
K +F N + G N L A K + + G A G+ +
Sbjct: 204 EAKARIFQ---NQQAGDFVVVNADDADVLGLARAAKAPVYGFSLTGKPVADAPALAGLAV 260
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
+ F + +G L N + G HN NA AAL LG GV A+ + +
Sbjct: 261 ---VEPGGFRLAFLG--EHYTLTNRALRGAHNAQNAMAAALLARLG---GVASGAVQAGL 312
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG 309
+ PHR++ V R + GV WV+DSKATN+++ L ++ GG+ K
Sbjct: 313 DGYPGLPHRLESV-RVLDGVEWVNDSKATNVDSVLVALRAFS-QGVWLIAGGKGKGAPYA 370
Query: 310 VLIW------KTLVNNGLSIPCFAVA-----------NMKDAVNHARRMATNGDAIVLSP 352
++ K ++ G A A + AV AR +A GD ++LSP
Sbjct: 371 PMVEAGQGKVKGVLTIGDDADTLARAYAGAAQVHACGTLAHAVARARELAERGDTVLLSP 430
Query: 353 GCASFDEFRNFEHRGMVFQEL 373
CASFD+F+NFE RG F+ L
Sbjct: 431 ACASFDQFKNFEDRGDSFKRL 451
>gi|257125000|ref|YP_003163114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptotrichia
buccalis C-1013-b]
gi|257048939|gb|ACV38123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
buccalis C-1013-b]
Length = 459
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 113/423 (26%), Positives = 205/423 (48%), Gaps = 77/423 (18%)
Query: 9 LEFQLKATGL---ACLLQSGK----RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
+EF +K+ G+ A LL+ K +V+SE+D A + + +++KI++ TGTNGK+T T +
Sbjct: 50 IEFIVKSPGIPWKAELLKVAKEKNVKVISEIDLAYKYVDKNVKIISFTGTNGKTTTSTKM 109
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
++LN G A + GN A F L + + K V+E+SSYQ+E N
Sbjct: 110 AELLNFSGFRAKLAGN-------AGFSFAKLVADEEKLDYIVLELSSYQLE-NNPQIHSN 161
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQ--------------- 166
++ ++NLTPDHL R+ ++++Y +TK ++F V + L+ ++
Sbjct: 162 IAGIINLTPDHLTRYNSVEDYYITKFNIFDKQVESDFALINLDDKEFEKLYERNEIKEKI 221
Query: 167 -----HLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNM 215
+L+ KG ++ ++ + F +ID + +F+ V VS+ ++ +
Sbjct: 222 KSKKIYLSTETKGTIFVYKNDICIMKDFKK-RID---EIENFD-ENVDKVSEILMKTDEL 276
Query: 216 KVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT-WV 272
+ G+HN N + + +L + E L ST+ + HR++ I+G T ++
Sbjct: 277 SLKGKHNLENMLFLIGSAKILNISNEKISEFLKSTVAL----EHRLENFF--IKGNTIFI 330
Query: 273 DDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWK----------------TL 316
+DSK TN+E+T + D + +++LGG K + LI + L
Sbjct: 331 NDSKGTNVESTLKAI-DSFDNSIIMILGGDDKKIDNMPLIERIKEKADFVYLIGDNAQIL 389
Query: 317 VNNGLSIPCFAVANMKDAVNHARRMATNGD-----AIVLSPGCASFDEFRNFEHRGMVFQ 371
+++ I N++ N + N D ++ SP +SF +F++FEHRG VF+
Sbjct: 390 IDDMEKIGYKNYKNLETVENVLNYLKENIDFSKNQTVLFSPATSSFCQFKSFEHRGKVFK 449
Query: 372 ELA 374
EL
Sbjct: 450 ELT 452
>gi|37527520|ref|NP_930864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|60390525|sp|Q7N145.1|MURD_PHOLL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|36786955|emb|CAE16029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid adding enzyme) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 436
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 113/357 (31%), Positives = 175/357 (49%), Gaps = 58/357 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV + VG+M + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTSLVGEMAKAANWQVGVGGNIGLP---------ALELLKKSCQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E T + VLN+T DH++R+ + + Y K ++ +VN +
Sbjct: 158 ELSSFQLET-TYSLNATAAAVLNVTEDHMDRYPQGVSQYRAAKLRIYHQAKRCIVNAQDP 216
Query: 160 L-LP---FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
L LP ++ ++ + + L AF +K+ ++ A+ E+
Sbjct: 217 LTLPEMGMDSRCVSFGVDCGDYQLDSENAF--LKVHNQSLLATNEI-------------- 260
Query: 216 KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
K+ GRHNY N VA L +G+ EA +T+ + HR Q+ + +GV W++DS
Sbjct: 261 KLTGRHNYANGLVAL--ALADAVGIPREASLATLTVYPGLDHRFQLARLN-KGVRWINDS 317
Query: 276 KATNLEATCTGL--MDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA------ 327
KATN+ +T L ++L+G +LLGG K L L N + + CF
Sbjct: 318 KATNVGSTMAALDGLNLEG-TLYLLLGGDGKSADFSPL-KPFLCGNKVQLYCFGRDGKQL 375
Query: 328 ------VANMKDAVNHA-RRMATN---GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+A + + + A R +A GD ++LSP CAS D+FRNFE RG F LA
Sbjct: 376 AQLRPEIATLTETMEQAIRDIAPRLVAGDMVLLSPACASLDQFRNFEQRGHEFTRLA 432
>gi|381199860|ref|ZP_09907006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobium
yanoikuyae XLDN2-5]
Length = 437
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 164/350 (46%), Gaps = 53/350 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ--- 100
K++ +TGTNGKST + ++ G A +GGN+G P+ + +P
Sbjct: 110 KVVGITGTNGKSTTTALIHHIIEQAGFPARMGGNIGLPI-------LGQEPLEPNLHGMG 162
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
V V+E+SSYQ+++ + C V+V+LN+TPDHL+R+ Y +K LF+ + +
Sbjct: 163 VYVLELSSYQIDLTHSLDC-DVAVLLNITPDHLDRYNGFAGYVASKARLFAMQSAEHVAV 221
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ ++ P I A EV A + + QL + G
Sbjct: 222 IATEDE-------------------PSRGIAASAPAQLREVKAADIDPEAQLGWPSLQGP 262
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN NAAVA +G +G+D + + + + PHRMQ V GV +V+DSKATN
Sbjct: 263 HNAQNAAVAI--AVGRALGIDDATIMAALASYASLPHRMQAVGTH-NGVLYVNDSKATNA 319
Query: 281 EATCT--GLMDLKGHKCVI--LLGGQAKFG--------YSGVLIWKTLVNNG-----LSI 323
+T G + K I +LGG AK Y + T+ G L
Sbjct: 320 ASTAPALGAWPARDGKPRIHWILGGVAKSDNLDECAPYYGNIAHAYTIGEAGHMFADLLR 379
Query: 324 PCFAVAN---MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
P AV + + AV A R+A GD ++LSP CASFD+FR+FE RG F
Sbjct: 380 PHMAVDDSEMLSAAVRRAARIAQPGDVVLLSPACASFDQFRDFEARGDAF 429
>gi|336123370|ref|YP_004565418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio anguillarum
775]
gi|335341093|gb|AEH32376.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio anguillarum
775]
Length = 444
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 165/353 (46%), Gaps = 50/353 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG NGKSTV G + G++ VGGN+G P AL + + + V+
Sbjct: 115 VIAITGANGKSTVTDLTGVLAKAAGVKVAVGGNIGVP---------ALDLLQQEADLYVL 165
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + + + LNLT DH++R+ M++Y K +F + +VN
Sbjct: 166 ELSSFQLETTSSLKLVSAAF-LNLTEDHMDRYDGMESYRQAKLRIFKYAQAAVVNAD--- 221
Query: 161 LPFGNQHLNEAIKGH--RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+Q + GH RF++ + ID ++ + P L + ++
Sbjct: 222 ---DSQTEPPSFSGHIARFSVEHDADYCTQMIDGKSFLVAKGTPL------LASEELSLV 272
Query: 219 GRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
GRHN N +A L + G+D ++AL S R HR Q+V D GV WV+DSK
Sbjct: 273 GRHNSANVLTVLALLDLAGVDYSSALDALKS----YRGLTHRCQVV-ADNHGVKWVNDSK 327
Query: 277 ATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------- 328
ATN+ +T L L + LL G G + L + + CF V
Sbjct: 328 ATNVASTQAALSGLNCQGTLYLLVGGVGKGADFSPLAPILKTLNVKLCCFGVDGGQFMPL 387
Query: 329 -------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
++M++ + + GD ++LSP CASFD+F+NF RG F ELA
Sbjct: 388 HPSAQFYSSMEEIIVSIKPQLRRGDMVMLSPVCASFDQFKNFMARGDAFAELA 440
>gi|88799425|ref|ZP_01115002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea
blandensis MED297]
gi|88777735|gb|EAR08933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
MED297]
Length = 463
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 169/351 (48%), Gaps = 41/351 (11%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K++A+TG+N KSTV ++G+ L G + V GN+G P+ L + + VAV
Sbjct: 128 KVIAITGSNAKSTVTAWLGEALKAGGQKTLVAGNIGIPV---------LETDHAAYDVAV 178
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+E+ ++ ++ VLN++ DH++R++T+ +Y K ++ +
Sbjct: 179 LELSSFQLELLSR-VNADIACVLNISEDHMDRYETLAHYVQAKQKIYFGAASVLYNRSDA 237
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
Q L + H + P + K E A G L + + + G HN
Sbjct: 238 LTQPL---VPDHVLKRTFASDAPDLNHYGLRKQDGNEWLAQGFDLVLPVSEVALPGGHNV 294
Query: 224 HNA-AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
NA AV AL+ + G D A + + P+R Q + R+ G+T+++DSKATN+ +
Sbjct: 295 MNALAVLALADMA---GNDRSATLTALTSFSGLPYRCQAI-RERAGITFINDSKATNVGS 350
Query: 283 TCT---GLMDLKGHKCVILLGGQAK---FGYSGVLIWKT--------------LVNNGLS 322
T GL+ ++G +L GGQAK +I +T L +
Sbjct: 351 TTAALEGLVSVRGANIHLLAGGQAKDQDLSPLAEVIEQTCKQVYAFGQDRQQFLALTDRA 410
Query: 323 IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ C + +A A A GD ++LSP CASFD+F NFEHRG F +L
Sbjct: 411 VEC---ETLSEAFAKANANAQEGDIVLLSPACASFDQFENFEHRGQQFNQL 458
>gi|374385849|ref|ZP_09643351.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Odoribacter laneus
YIT 12061]
gi|373224794|gb|EHP47130.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Odoribacter laneus
YIT 12061]
Length = 450
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 189/383 (49%), Gaps = 44/383 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L G V+SE++ A + ++ +TG+NGK+T + +L G++A + GN
Sbjct: 78 IKALQAKGIEVISEIELAGR--HSDAIMICITGSNGKTTTTLLIHHILVQAGMDAGLAGN 135
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G H +A ++ + VVE+SS+Q++ + F ++V+ N+TPDHL+R+
Sbjct: 136 VG--------HSLAAQVAENAHPLYVVELSSFQLDGMFR-FQADIAVLTNVTPDHLDRYD 186
Query: 138 -TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI----GAFPGVKIDT 192
+NY +K + ++M L + + + + + + G + + G P ++
Sbjct: 187 YKFENYVNSKFRILNNMGKEGLFIYGYDCEVVRQRVIGQKLLPQAVPFTYGGEPDLQQAG 246
Query: 193 EAKTASFEVPAVGV-----VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
A E + V V ++ +++ + GRHN +NA A L+ + GVD A+ +
Sbjct: 247 GTACAYMEGDTIVVRLDEKVFRMDKNDVSIKGRHNVYNAMAAILACM--RAGVDPGAIAA 304
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGY 307
++ HR++ V + GVT+++DSKATN+++ L D H V + GG K G
Sbjct: 305 GLKSFPQVEHRLETVAV-VAGVTYINDSKATNVDSAWYAL-DSMTHPVVWIAGGTDK-GN 361
Query: 308 SGVLIWKTLVNNGLSIPCFAVANMK------------------DAVNHARRMATNGDAIV 349
++++ + ++ C V N K +A+ ++ A GD ++
Sbjct: 362 DYTVLYELVKQKVKALVCMGVDNRKLIENFSGICPVADTHSLEEALAAVQKYACEGDTVL 421
Query: 350 LSPGCASFDEFRNFEHRGMVFQE 372
LSP CASFD F+N+E RG +F+E
Sbjct: 422 LSPCCASFDLFKNYEQRGELFKE 444
>gi|224536612|ref|ZP_03677151.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
DSM 14838]
gi|423223526|ref|ZP_17209995.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
cellulosilyticus CL02T12C19]
gi|224521703|gb|EEF90808.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
DSM 14838]
gi|392638406|gb|EIY32247.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
cellulosilyticus CL02T12C19]
Length = 444
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 185/378 (48%), Gaps = 46/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKKQGTPVISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVATDQHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYNHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+NY K + + + + + + H A + F +K D E
Sbjct: 190 MQNYVDAKFRITQNQTPEDAFIFWNDDPIIKRELDKHGL-CAHLYPFSAMKEDGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G++ E + + +
Sbjct: 249 DGEVEINEP---IAFNMEQEKLALQGTHNLYNSLAAGISA-NL-AGIEKEYIRRALSDFK 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV-- 310
HR++ V ++GV +++DSKATN+ + L +K K V++LGG+ K Y+ +
Sbjct: 304 GVEHRLEKVAT-VRGVEFINDSKATNVNSCWYALQSMKT-KTVLILGGKDKGNDYTEIED 361
Query: 311 --------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLSPGC 354
L++ L N L +P V MKDAV+ A R+A G+ ++LSP C
Sbjct: 362 LVREKCSALVYLGLHNEKLHDFFDRMGLPVADVQTGMKDAVDAAFRLAKKGETVLLSPCC 421
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F ++E RG F+E
Sbjct: 422 ASFDLFNSYEDRGDQFKE 439
>gi|452992690|emb|CCQ95849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
ultunense Esp]
Length = 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 184/384 (47%), Gaps = 57/384 (14%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+++L+ A ++ P S +A+TGTNGK+T T VGQ N G V GN+G
Sbjct: 91 GIEVLTDLELAYRISPNS-NFIAITGTNGKTTTTTLVGQFFNKAGFTTHVAGNIG----- 144
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
+ SSK V VVE SS+Q+E F P +S++LN+TPDHL H T+ NY
Sbjct: 145 VGILWDVVNSSKE--DVFVVEASSFQLE-NTVEFNPKISLILNITPDHLNWHNTLDNYIK 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + + L + NL W +D + +
Sbjct: 202 AKKKIFLNQAEDEYTILNYDDPLLKGMKDEIKANLTWFS------VDNKLSKGIYIENGY 255
Query: 205 GVVSQ-------LQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTP 255
V+ ++ + +K++G+HN N A+VA ++GLDI V ++LRT
Sbjct: 256 VVIDDGDKAEKVIRTNEIKILGKHNLENVLASVAIGWIMGLDINV-------MKKVLRTF 308
Query: 256 P---HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
P HR++ V I G+ + +DSK TN EA+ + ++ +++ GG K
Sbjct: 309 PGVEHRIEYVDI-IDGIKFYNDSKGTNPEASIKAIEAVES-PIILIAGGHDKGSEFDNFI 366
Query: 305 ------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
G + I T + G + + V NM++AV + +A +GD I+LSP
Sbjct: 367 LSFKGKVKSIVLLGETKEKIKDTALKYGFN-NVYIVDNMEEAVIKSYGLAESGDNILLSP 425
Query: 353 GCASFDEFRNFEHRGMVFQELAFS 376
CAS+D + +FE RG F++ +
Sbjct: 426 ACASWDMYNSFEMRGNDFKKAVYD 449
>gi|260891632|ref|ZP_05902895.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
hofstadii F0254]
gi|260858642|gb|EEX73142.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
hofstadii F0254]
Length = 459
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 192/406 (47%), Gaps = 60/406 (14%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA L + G +++SE+D A + + ++IKI++ TGTNGK+T T + ++LN G A
Sbjct: 63 KAELLKVAKEKGVKIISEIDLAYKYVDKNIKIISFTGTNGKTTTSTKMAELLNFAGFRAK 122
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+ GN A F L + + + V+E+SSYQ+E N ++ ++NLTPDHL
Sbjct: 123 LAGN-------AGFSFAKLVADEEELDYIVLELSSYQLE-NNPQIHSNIAGIINLTPDHL 174
Query: 134 ERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQ---------HLNEAIKGHRFNLA---- 180
R++++++Y +TK +F L+ ++ +NE +K + L+
Sbjct: 175 TRYESVEDYYITKFAIFDKQTGDDFALINLDDEVFAELYERREINEKMKAQKVYLSKETK 234
Query: 181 -WIGAFP-GVKIDTEAKTASFEVPAVG----VVSQ--LQLHNMKVMGRHNYHNA--AVAA 230
+ + ++I + E+ G +S+ L+ + + GRHN N +++
Sbjct: 235 GTVFVYENNIRIMKDLSKRIDEIQNFGEKIDEISEILLKTEELSLKGRHNLENMLFLISS 294
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT-WVDDSKATNLEATCTGLMD 289
+L + E L ST HR++ ++G T +++DSK TN+E+T + D
Sbjct: 295 AKILNVKNEKLAEFLKST----NALEHRLENFF--VKGNTAFINDSKGTNVESTLKAI-D 347
Query: 290 LKGHKCVILLGGQAKFGYSGVLIWKT----------------LVNNGLSIPCFAVANMKD 333
+ +++LGG K + LI + L+++ I N++
Sbjct: 348 SFNNSIIMILGGDDKKIDNMPLIERVKEKVDFVYLIGDNAQILIDDMEKIGYKNYKNLET 407
Query: 334 AVNHARRMATNGD-----AIVLSPGCASFDEFRNFEHRGMVFQELA 374
N + N D ++ SP +SF +F++FEHRG VF+EL
Sbjct: 408 VENVLNYLKQNVDFSQNQTVLFSPATSSFCQFKSFEHRGKVFKELT 453
>gi|429740180|ref|ZP_19273885.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
saccharolytica F0055]
gi|429154119|gb|EKX96870.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
saccharolytica F0055]
Length = 443
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 185/376 (49%), Gaps = 45/376 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G ++SE++FA + K++ +TG+NGK+T + + + G + + GN+G
Sbjct: 83 IKKGIHIISEIEFAGRYT--HAKMVCITGSNGKTTTTSLIYHIFKAAGYDVGLAGNIGRS 140
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-TM 139
L AL ++ + V+E+SS+Q++ + Y F ++++LN+TPDHL+R+ M
Sbjct: 141 L--------ALQVAEDPHEYYVIELSSFQLD--DMYDFRANIAILLNITPDHLDRYDHCM 190
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+NY +K + + + + + +K + N FP ++ + A
Sbjct: 191 QNYVDSKMRILQNQTAADSFIFWNDDPIIKNELKKYNINAF---QFPFSELKEKGSIAYI 247
Query: 200 EVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILRT 254
E + ++ ++ + G+HN +N+ A ++ +I G+ E + ++
Sbjct: 248 EEGQYKIEKPTPFNMEQESLSLTGKHNIYNSLAAGIAT---NIAGIKKEVIRKSLSDFPG 304
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV--- 310
HR++ V + + GV +++DSKATN+ A L +K ++++GGQ K Y+ +
Sbjct: 305 VEHRLEKVLK-VGGVQYINDSKATNVGACWYALESMKT-PTILIIGGQDKGNDYTSIKQL 362
Query: 311 -------LIW-----KTLVNN--GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
L++ K L +N L IP NM D V RMA G ++LSP CAS
Sbjct: 363 VKEKCVGLVYLGADNKKLHDNFDSLGIPVEETHNMPDCVKACARMARPGYTVLLSPCCAS 422
Query: 357 FDEFRNFEHRGMVFQE 372
FD F+N E RG F+E
Sbjct: 423 FDLFKNMEDRGEQFKE 438
>gi|189464537|ref|ZP_03013322.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
17393]
gi|189438327|gb|EDV07312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
intestinalis DSM 17393]
Length = 444
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 185/378 (48%), Gaps = 46/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKEQGTPIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVATDQHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+NY K + + + + + + H A + F VK D E
Sbjct: 190 MQNYVDAKFRITQNQTPEDAFIFWNDDPIIKRELDKHGLR-AHLYPFSAVKEDGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G++ E + + +
Sbjct: 249 DGEVEINEP---IAFNMEQEKLALQGTHNLYNSLAAGISA-NL-AGIEKEYIRRALSDFK 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV-- 310
HR++ V ++GV +++DSKATN+ + L +K K V++LGG+ K Y+ +
Sbjct: 304 GVEHRLEKVAT-VRGVEFINDSKATNVNSCWYALQSMKT-KTVLILGGKDKGNDYTEIED 361
Query: 311 --------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLSPGC 354
L++ L N L +P V MKDAV+ A R+A G+ ++LSP C
Sbjct: 362 LVREKCSALVYLGLHNEKLHDFFDRMGLPVADVQTGMKDAVDAAFRLAKKGETVLLSPCC 421
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F ++E RG F++
Sbjct: 422 ASFDLFSSYEDRGDQFKK 439
>gi|78184101|ref|YP_376536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. CC9902]
gi|118595699|sp|Q3AZI5.1|MURD_SYNS9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|78168395|gb|ABB25492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
CC9902]
Length = 462
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 179/389 (46%), Gaps = 53/389 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G ++ E++ A + + I + +TGTNGK+TV + +L H GI A +GGN
Sbjct: 86 LNGLRQEGVQIRGEIELAWEAL-NDIPWVGITGTNGKTTVTHLLSHVLGHAGIVAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI-PNKYFCPTVSVVLNLTPDHLERH 136
+G ++ A + KP + V+E+SSYQ+E PN P++ + LTPDHLERH
Sbjct: 145 MGVSAADMALKIRRGETPKPDW--LVMELSSYQIEAGPN--LAPSIGIWTTLTPDHLERH 200
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA---WIGAFPGVKIDTE 193
T++ Y K H + + L F + + HR +L W+ A P D
Sbjct: 201 GTLEAYRAIK-----HSLLQRSSLAIFNGDDAD--LSAHRPSLKRGMWVKAAPPCHDD-- 251
Query: 194 AKTASFEVPAVGVVSQLQLHNM---KVM---GRHNYHNAAVAALSVLGLDIGVDVEALNS 247
A F + G V + M KV+ G HN N + ++ IG++ E +
Sbjct: 252 -PPADFWIDDAGTVQAREGGAMFPAKVLAMPGAHNRQNLLL--VTAAAAQIGLNAEQIAQ 308
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGY 307
+E PHR++ + +DSKATN +A GL + G V+L GGQ K G
Sbjct: 309 GLESFPGVPHRLENLG-STSSADVFNDSKATNYDAAAVGLQAMAG-PVVVLAGGQTKRGN 366
Query: 308 SGVLIWKTLVNNGLSIPCFAVA---------------------NMKDAVNHARRMAT--N 344
+ + L + ++ F ++ AV A R +
Sbjct: 367 ATGWL-AELKSKACAVVLFGAGAEELDALIRQSNYQGQVHRCTDLSAAVAIAVRATSELQ 425
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+++LSP CASFD++++FE RG F++L
Sbjct: 426 ASSLLLSPACASFDQYQDFEARGDHFRDL 454
>gi|418678940|ref|ZP_13240212.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Grippotyphosa str. RM52]
gi|418687863|ref|ZP_13249021.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|418739344|ref|ZP_13295731.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
gi|421092088|ref|ZP_15552846.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. 200802841]
gi|400320700|gb|EJO68562.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Grippotyphosa str. RM52]
gi|409999104|gb|EKO49802.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri str. 200802841]
gi|410737602|gb|EKQ82342.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|410753343|gb|EKR10309.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
Length = 463
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 180/392 (45%), Gaps = 73/392 (18%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE+D KI+ +TGT+GKST + + +L + GGNLG P +
Sbjct: 89 VISEIDLGRYFFKG--KIIGITGTDGKSTTTSLIAHLLKQGFPDLREGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL DHLERHKTM+NY K
Sbjct: 147 ESISL---------AVLELSSYQLEDSSPLHL-NVSVFLNLASDHLERHKTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK--IDTEA---KTASF 199
+ + + N+ L+ ++ + E I ++ L G PG +D + KT+ F
Sbjct: 197 KI-ADLSNSNHSLIV--SEKIKERILNSTSYQCKLLSFGKTPGSNAFLDESSLKIKTSKF 253
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ +S+ L G HN N A + L+ +IG E++ + I + R PHR
Sbjct: 254 ----IYDISKFYLP-----GSHNRENLAASILA--AEEIGEKPESIQTRIPLFRGLPHRF 302
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK---------FGYSG 309
QI + G+++++DSK+TNL + G+ K + ++LGG+ K F G
Sbjct: 303 QIAGEKL-GISFINDSKSTNLHSMLAGMATWKNLDQTCLILGGRPKQEDPKPLYDFLIKG 361
Query: 310 V----------LIWKTLVNNGLSIPCFAVANMKDAVNHARR--MATNGD----------- 346
+ +W+ + N + V N+ D ++ + T D
Sbjct: 362 IGCVVLFGEARSVWENGIRNIIGEKLHCVENLNDTFEIFKKGYILTAADSGKDSMFRLSH 421
Query: 347 -----AIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ V SP CASFD+++NFE RG F L
Sbjct: 422 GISISSFVFSPACASFDQYKNFEERGNHFLSL 453
>gi|150026097|ref|YP_001296923.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
psychrophilum JIP02/86]
gi|149772638|emb|CAL44121.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
psychrophilum JIP02/86]
Length = 443
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/373 (28%), Positives = 174/373 (46%), Gaps = 50/373 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++F A + K + +TG+NGK+T V +L G+ + GN+G
Sbjct: 88 VISEIEFTAPFT--NAKTIGITGSNGKTTTTMLVYHLLKQGGLNVGLAGNIG-------- 137
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
A S+ V+E+SS+Q++ KY P ++++ N++PDHL+R+ + Y +K
Sbjct: 138 KSFAWQVSEDTHDFYVLELSSFQLDGIQKY-KPHIAIITNISPDHLDRYDYQYEKYIESK 196
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-------FNLAWIGAFPGVKIDTEAKTASF 199
+ + + +Q +N +K ++ F+L F + + +
Sbjct: 197 FRITMNQTEEDYLIYDADDQAINNWLKNNKTKAQLVPFSLTKQFEFGAYEANNNININTN 256
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
P V S+L L G+HN NA +AA SV L + + + ++ + HR+
Sbjct: 257 NDPFVMQTSELSLE-----GKHNVKNA-LAATSVAQL-LKIRKATIRESLADFQGVEHRL 309
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNN 319
+ V + IQ V +++DSKATN+ AT L + I+ G YS ++ LVN
Sbjct: 310 EKVLK-IQNVQYINDSKATNVNATFYALDSMTSPTIWIVGGVDKGNDYSELM---ELVNK 365
Query: 320 GL-SIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFDE 359
+ +I C V N M DAV A +MA GD ++LSP CASFD
Sbjct: 366 NVKTIICLGVDNKKIIDAFSNVVDELIEVSTMTDAVRQAYKMAEKGDTVLLSPACASFDL 425
Query: 360 FRNFEHRGMVFQE 372
F N+E RG F++
Sbjct: 426 FENYEDRGRQFKQ 438
>gi|269798175|ref|YP_003312075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Veillonella
parvula DSM 2008]
gi|269094804|gb|ACZ24795.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
DSM 2008]
Length = 456
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 178/370 (48%), Gaps = 40/370 (10%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A +V I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVELAYEV--SKSPIVAVTGTNGKTTTTTLLTKVLEGSGKPVHVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E K+F P +++LN+TPDHL RHKTM+NY
Sbjct: 150 VAY-------SMPADGFLVAELSSYQLETI-KHFRPIGAIMLNITPDHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-ASFE 200
K +F + ++T +L + + H ++ A + K + +
Sbjct: 202 AKERIFENQLSTDYLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGKCYIAKD 261
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
A V++ +H + G HN N + + L +GV VE ++ I HR++
Sbjct: 262 GVAKFVIADEDIH---IPGSHNIEN--ILTVIALSYALGVPVETIHRIISEFHGVEHRLE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---------------- 304
V + I G+T+ +DSKATN+++ L + ++L GG K
Sbjct: 317 RV-KTIDGITFYNDSKATNVDSVVKALESFD-QQVILLAGGHDKMTPLEDFMELVKEKTK 374
Query: 305 ---FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
F ++T P + +MKDAV ++A GD ++LSP C+SFD +
Sbjct: 375 AVIFMGEAADRFETAAKKAGVKPIYRALSMKDAVEKGYKLAETGDIVLLSPACSSFDWYS 434
Query: 362 NFEHRGMVFQ 371
FE RG F+
Sbjct: 435 CFEERGDDFK 444
>gi|423301213|ref|ZP_17279237.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
finegoldii CL09T03C10]
gi|408471814|gb|EKJ90343.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
finegoldii CL09T03C10]
Length = 444
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 187/381 (49%), Gaps = 52/381 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P + L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIKRELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKINE------PIAFNMEQEELALTGQHNLYNSLAAGISA-NL-AGITKENIRKALS 300
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSG 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 301 DFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTE 358
Query: 310 V----------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLS 351
+ L++ L N L +P V MKDAV A ++A G+ ++LS
Sbjct: 359 IEDLVREKCSALVYMGLHNEKLHDFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLS 418
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CASFD F+++E RG F+E
Sbjct: 419 PCCASFDLFKSYEDRGEQFKE 439
>gi|422002286|ref|ZP_16349524.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
santarosai serovar Shermani str. LT 821]
gi|417259218|gb|EKT88597.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
santarosai serovar Shermani str. LT 821]
Length = 462
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 177/382 (46%), Gaps = 59/382 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D KI+ VTGT+GKST + +L + GGNLG P +
Sbjct: 89 VFSEIDLGRFFFKG--KIIGVTGTDGKSTTTSLTAHLLRKDFSDLREGGNLGTPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ++ N VSV LNL PDHLERH TM+NY K
Sbjct: 147 KPISL---------AVLELSSYQLDDSNPLHL-DVSVFLNLAPDHLERHTTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+ +++ N L+ ++E IK NLA T A A + + +
Sbjct: 197 KI-ANLQNENHFLI------VSEKIKERILNLASFRCKLLSFGRTSASDAFLDENSSKIG 249
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ ++++ HN A S+L + IG E++ + I + + PHR QI +
Sbjct: 250 TSKFVYDISGFHLPGTHNGENLAASILAAEAIGGKPESIQAQIPLFKGLPHRFQIAG-EK 308
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK-------FGYSG------VLI 312
QG+++++DSK+TNL + G+ K + ++LGG+ K + + VLI
Sbjct: 309 QGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPKQEDPRPLYDFLNRKIGCVVLI 368
Query: 313 ------WKTLVNNGLSIPCFAVANMKDAV----------------NHARRMATNGD--AI 348
W+ + N + F+V ++ +A N R+ + + ++
Sbjct: 369 GEARSFWEEGIRNAIGEKLFSVESLNEAFEIFKKGNIVSETSRPSNRKIRLTNSAEITSV 428
Query: 349 VLSPGCASFDEFRNFEHRGMVF 370
V SP CASFD+++NFE RG F
Sbjct: 429 VFSPACASFDQYKNFEERGNHF 450
>gi|262383988|ref|ZP_06077124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_33B]
gi|262294886|gb|EEY82818.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
2_1_33B]
Length = 445
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 184/386 (47%), Gaps = 50/386 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 76 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 134 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFP-- 186
L+R+ M+NY K + + TK F N E K H + A
Sbjct: 184 LDRYNYEMQNYVDAKFRILQNQ--TKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHE 241
Query: 187 -GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
GVK TE E + L + + G HN +N+ + ++ +DI E +
Sbjct: 242 NGVKGYTENNQVVIETANGTFTMEQDL--LALTGTHNLYNSLASGIASKIVDIHD--EKI 297
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF 305
+++ HR++ V R ++GV +++DSKATN+ + L + +IL G
Sbjct: 298 RASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSMTTPVVLILGGTDKGN 356
Query: 306 GYSGVLIWKTLVNNGLSIPCF--------------AVANMKDA------VNHARRMATNG 345
YS + + LVN + F VAN++DA V A +MA G
Sbjct: 357 DYSEI---EELVNKKVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKG 413
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQ 371
D ++LSP CASFD F+++E RG F+
Sbjct: 414 DTVLLSPCCASFDLFKSYEDRGDQFK 439
>gi|402815853|ref|ZP_10865445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Paenibacillus
alvei DSM 29]
gi|402506893|gb|EJW17416.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Paenibacillus
alvei DSM 29]
Length = 472
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 190/394 (48%), Gaps = 50/394 (12%)
Query: 15 ATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
A +A ++ G V++E++ A Q+ P I+ +TG+NGK+T T+VG ML G++ V
Sbjct: 86 APPVARAIELGIEVVTEVEVAYQLSP--APIIGITGSNGKTTTTTWVGNMLESAGMKPIV 143
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
GN+G PL +AA + VVE+SS+Q++ F P V+ +LN+ HL+
Sbjct: 144 AGNIGTPLCQAA-------QEASEDNTLVVELSSFQLK-GTSAFRPRVACLLNIAETHLD 195
Query: 135 RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----GVKI 190
H TM++Y +K LF++M + + +L ++ + + W+ + GV +
Sbjct: 196 YHGTMEDYVASKARLFANMGSGDIAVLNADDETCRTLSSHIQADQWWVSSMKRVERGVFV 255
Query: 191 DTEAKTASFE-----VPAVG---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
+ + + E V A G V + + + + GR N NA A + + +G +
Sbjct: 256 EPSYEVEAEEEERKIVYADGTGRVFPIISVMELGIPGRFNVDNALAAC--AISIAVGAEP 313
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL-------------MD 289
AL ++ + HR++ V GV + ++SKATN +AT L +D
Sbjct: 314 SALVESLRSFQGVEHRLEFVSEQ-HGVKYYNNSKATNTKATLMALEAFERNIILIAGGLD 372
Query: 290 --LKGHKCVILLGGQAK----FGYSGVLIWKTLVNNGLSIPCF------AVANMKDAVNH 337
L H+ V ++G + K G + ++ GL+ A +K+AV
Sbjct: 373 RGLDFHELVPIMGERVKAVVAMGQTRHIMKNVAEKAGLTDIAVVDNVDHAADAVKEAVEM 432
Query: 338 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
AR A GD ++LSP CAS+D F ++E RG +F+
Sbjct: 433 ARSYAKPGDIVLLSPACASWDMFPSYEDRGRMFK 466
>gi|124026491|ref|YP_001015606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. NATL1A]
gi|123961559|gb|ABM76342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. NATL1A]
Length = 469
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/381 (27%), Positives = 184/381 (48%), Gaps = 58/381 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V E++ A + + I + +TGTNGK+TV + +L + +GGN+G LS+ A
Sbjct: 104 VQGEVELAWERLTH-IPSIGITGTNGKTTVTNMLNHILKLNNLNTDMGGNIGKALSKIAL 162
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ ++ + V+E+SS+Q+E K PT+ + TPDHLERH +++Y K
Sbjct: 163 E--NMKNNNQELNWLVLELSSFQIEGSPK-VAPTIGIWTTFTPDHLERHNDIESYFKIKR 219
Query: 148 HLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
L + N+ L + L + I W+G + ++ F +
Sbjct: 220 SLLEKSSIRIYNSDDQFLSSKRKELPKGI--------WVGT---NQQSFYSEYQKFWIDQ 268
Query: 204 VGVV--SQLQLHN---MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
G + + QL + +K+ G+HN N + + +IG+D ++ +I+ R+ PHR
Sbjct: 269 KGYIFEDKKQLFHSSILKIPGKHNLQNLLLVIAA--AREIGLDDSSIAKSIKSFRSIPHR 326
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVN 318
++ + + I +++ +DSKATN +++ TGL + H ++L GG K G + W +
Sbjct: 327 LEYLGK-INNLSFYNDSKATNFDSSITGLKSVP-HPIILLAGGIQKKG--DFMPWVKQIK 382
Query: 319 ---NGLSIPCFAVANMKD-----------------------AVNHARRMATNGDAIVLSP 352
NG+ + + N+K+ ++N AR TN +I+LSP
Sbjct: 383 QSTNGIVLFGLSANNLKEELLMSSYTGEIIIKKNLEEATIASINIARE--TNSRSILLSP 440
Query: 353 GCASFDEFRNFEHRGMVFQEL 373
CASFD+++N+E RG F+ L
Sbjct: 441 ACASFDQYKNYEERGDHFKNL 461
>gi|256841648|ref|ZP_05547154.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
D13]
gi|256736542|gb|EEU49870.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
D13]
Length = 445
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 184/386 (47%), Gaps = 50/386 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 76 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 134 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFP-- 186
L+R+ M+NY K + + TK F N E K H + A
Sbjct: 184 LDRYNYEMQNYVDAKFRILQNQ--TKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHE 241
Query: 187 -GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
GVK TE E + L + + G HN +N+ + ++ +DI E +
Sbjct: 242 NGVKGYTENNQVVIETANGTFTMEQDL--LALTGTHNLYNSLASGIASKIVDIHD--EKI 297
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF 305
+++ HR++ V R ++GV +++DSKATN+ + L + +IL G
Sbjct: 298 RASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSMTTPVVLILGGTDKGN 356
Query: 306 GYSGVLIWKTLVNNGLSIPCF--------------AVANMKDA------VNHARRMATNG 345
YS + + LVN + F VAN++DA V A +MA G
Sbjct: 357 DYSEI---EELVNKKVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKG 413
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQ 371
D ++LSP CASFD F+++E RG F+
Sbjct: 414 DTVLLSPCCASFDLFKSYEDRGDQFK 439
>gi|255015709|ref|ZP_05287835.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
2_1_7]
gi|410104833|ref|ZP_11299744.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
D25]
gi|409233408|gb|EKN26245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
D25]
Length = 441
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 184/386 (47%), Gaps = 50/386 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 72 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 129
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 130 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 179
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFP-- 186
L+R+ M+NY K + + TK F N E K H + A
Sbjct: 180 LDRYNYEMQNYVDAKFRILQNQ--TKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHE 237
Query: 187 -GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
GVK TE E + L + + G HN +N+ + ++ +DI E +
Sbjct: 238 NGVKGYTENNQVVIETANGTFTMEQDL--LALTGTHNLYNSLASGIASKIVDIHD--EKI 293
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF 305
+++ HR++ V R ++GV +++DSKATN+ + L + +IL G
Sbjct: 294 RASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSMTTPVVLILGGTDKGN 352
Query: 306 GYSGVLIWKTLVNNGLSIPCF--------------AVANMKDA------VNHARRMATNG 345
YS + + LVN + F VAN++DA V A +MA G
Sbjct: 353 DYSEI---EELVNKKVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKG 409
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQ 371
D ++LSP CASFD F+++E RG F+
Sbjct: 410 DTVLLSPCCASFDLFKSYEDRGDQFK 435
>gi|255692976|ref|ZP_05416651.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
finegoldii DSM 17565]
gi|260621289|gb|EEX44160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
finegoldii DSM 17565]
Length = 444
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 188/381 (49%), Gaps = 52/381 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKSAGMNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P + L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIKRELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKINE------PIAFNMEQEELALTGQHNLYNSLAAGISA-NL-AGITKENIRKALS 300
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSG 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 301 DFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTE 358
Query: 310 V----------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLS 351
+ L++ L N L +P V MKDAV A ++A G+ ++LS
Sbjct: 359 IEDLVREKCSALVYMGLHNEKLHDFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLS 418
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CASFD F+++E RG F+E
Sbjct: 419 PCCASFDLFKSYEDRGEQFKE 439
>gi|409201093|ref|ZP_11229296.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
flavipulchra JG1]
Length = 440
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 180/379 (47%), Gaps = 54/379 (14%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A + G V+ +++ A++ R ++AVTG+NGKSTVVT ++L G++ +GGN
Sbjct: 88 VAAAIAEGVEVIGDIELFARLNTR--PVIAVTGSNGKSTVVTLATEVLKAAGLKVGLGGN 145
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G + L + V V+E+SS+Q+E + C + +++LN+T DH++R+
Sbjct: 146 IGTSV---------LSLLEQPHDVYVLELSSFQLETTHSLACLS-AMILNITEDHMDRYP 195
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI-GAFPGVKIDTEAKT 196
+ Y K ++ H+ + H A G +++ G + + D EA
Sbjct: 196 DFQAYIEAKQRIYQHVEHIVFN----AEDHYTFAQHGQGSSVSLTEGDYHLMTFDGEAYF 251
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
A + P + V + ++GRHN NA + + + ++A S P
Sbjct: 252 AHKQTPLLAV------KTLAMVGRHNQFNALAVLALLAPMQL--SMQAFASAFASFTGLP 303
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILL-GGQAK---------- 304
HR Q+V D+ V + +DSKATN+ +T + L G K +IL+ GG AK
Sbjct: 304 HRCQLV-ADVAEVRYFNDSKATNVGSTVAAIDSLASGRKNIILIVGGDAKGADLSPLKTP 362
Query: 305 ----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
FG G L N+ V N+++AV A+ +ATNGD ++L+P C
Sbjct: 363 LTTHCKALFCFGQDGAQFMPLLRNS------HQVNNLEEAVLAAKTIATNGDIVLLAPAC 416
Query: 355 ASFDEFRNFEHRGMVFQEL 373
AS D + N+ RG F L
Sbjct: 417 ASIDMYPNYMARGDEFVRL 435
>gi|317046895|ref|YP_004114543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea sp. At-9b]
gi|316948512|gb|ADU67987.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. At-9b]
Length = 438
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 168/369 (45%), Gaps = 80/369 (21%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP---------ALSLLKSPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLET-TYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENARVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN + W+ G K+
Sbjct: 217 MTMPVRGADTRCVSFGIDIGDYHLN-----RQQGSTWL-RVKGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--GVDVEALNSTIEILRTPPHRMQIV 262
L MK++G+HNY NA A ++I ++AL + + PHR Q+V
Sbjct: 257 -----LNTDEMKLVGQHNYTNALAALALADAVNIPRASSLKALTTFTGL----PHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGL 321
H + G+ W++DSKATN+ +T L L+ + +LLGG K L + + + +
Sbjct: 308 H-EAHGIRWINDSKATNVGSTEAALNGLQVKGTLWLLLGGDGKSADFSPLA-RYVQGDNV 365
Query: 322 SIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 365
+ CF ++ A+ A GD ++LSP CAS D+FRNFE
Sbjct: 366 RLFCFGRDGDALAALRPEIATRTETLQQAMAQIASQAQAGDMVLLSPACASLDQFRNFEQ 425
Query: 366 RGMVFQELA 374
RG F +LA
Sbjct: 426 RGDQFAQLA 434
>gi|343085408|ref|YP_004774703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyclobacterium
marinum DSM 745]
gi|342353942|gb|AEL26472.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyclobacterium
marinum DSM 745]
Length = 447
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 185/378 (48%), Gaps = 46/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+++G V+ EL+FA + K++A+TGTNGK+T + ++ G++ +GGN+G
Sbjct: 82 LVEAGIPVIDELEFAYRF--SKGKVIAITGTNGKTTTSLLIYHLMKRAGMDVGLGGNVG- 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQME--IPNKYFCPTVSVVLNLTPDHLER-HK 137
AL + V+EVSS+Q+E I K P+++V+LN++PDHL+R H
Sbjct: 139 -------QSWALQLVEKDHSWWVLEVSSFQIEGFIDLK---PSIAVLLNISPDHLDRYHY 188
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN--LAWIG--AFPGVKIDTE 193
+++ YA K L M + + +++EA+K + N L IG G K E
Sbjct: 189 SLEEYAAAKIKLTERMNAQDHFVFFEPDSNISEAMKSQKGNPTLVPIGLENLNGTKGYIE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
+ + G+ + M + G HN+ N+ A ++V+ G D+ + ++
Sbjct: 249 DNKLNLAIN--GLNWSWPTNEMVLKGEHNFINSLAATMTVVL--AGADISKIGPALKDFV 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW 313
HRM+ V I GV +++DSK TN++AT L + + +I + G G L+
Sbjct: 305 NAAHRMEQVAT-INGVKFINDSKGTNVDATAFALGAFQ--EPLIWIAGGVDKGNDYKLLD 361
Query: 314 KTLVNN------------------GLSIPC-FAVANMKDAVNHARRMATNGDAIVLSPGC 354
++++ IPC ++++AV + + GD +LSP C
Sbjct: 362 DKVIDHVKLLICLGKDNEKLKIAFSGKIPCILTTEDIREAVQWSLENGSEGDVALLSPAC 421
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F+N+E RG F+E
Sbjct: 422 ASFDLFKNYEDRGDQFKE 439
>gi|91228512|ref|ZP_01262434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
alginolyticus 12G01]
gi|91187946|gb|EAS74256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
alginolyticus 12G01]
Length = 437
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 180/390 (46%), Gaps = 74/390 (18%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M N G++ VGGN
Sbjct: 85 IQAVLAKGTAVVGDIELFAWAVQKPV--IAITGSNGKSTVTDLTGVMANAAGLDVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYQ 192
Query: 138 TMKNYALTKCHLFSHMV-------------NTKLGLLPFG--NQHLNEAIKGHRFNLAWI 182
M +Y K +F+H + ++ L+ FG NQ + G+R W+
Sbjct: 193 GMSDYRQAKLRIFNHAALAVVNRDDQETFPDAEMPLVTFGSDNQDFGLEVDGNR---TWL 249
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
+D + + + +K++G+HN NA VA + D+
Sbjct: 250 -------LDHGQRVVASD-------------ELKLVGKHNLSNALVALALLKAADVNYH- 288
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGG 301
+ALN T++ HR Q+V D QGV WV+DSKATN+ +T L L+ K +L+GG
Sbjct: 289 KALN-TLKNYTGLTHRCQVV-ADNQGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGG 346
Query: 302 QAKFGYSGVL--IWKTLVNNGLSIPCFAV---------------ANMKDAVNHARRMATN 344
K L I+ TL L + CF M+D +
Sbjct: 347 VGKGADFSPLKPIFATL---NLQLCCFGADGDEFMPLHESAIRFDTMEDVIQQVSSQLKP 403
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
GD ++LSP CASFD+F NF RG F LA
Sbjct: 404 GDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|429756498|ref|ZP_19289090.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 324 str. F0483]
gi|429171239|gb|EKY12873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 324 str. F0483]
Length = 444
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 188/385 (48%), Gaps = 48/385 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + + G V+SE++FA+Q I + +TG+NGK+T + G++
Sbjct: 75 KAPIIKKVHEKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTHHIFKEAGLQVG 132
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+G +E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL
Sbjct: 133 LGGNIGYSFAEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHL 183
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R+ +NY +K + + + ++ + + + H I I+
Sbjct: 184 DRYDYKFENYINSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEK 239
Query: 193 EAKTASF------EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
E +F + +++ + + + G+HN N A SV + + +L
Sbjct: 240 ELPQGAFLKDNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLR 297
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
+++ + PHR++ V + ++GVT+V+DSKATN+ + L +K V ++GGQ K
Sbjct: 298 ESLKGFKGAPHRLEEV-KVVEGVTYVNDSKATNVNSVFYALDTIK-TPIVWIVGGQDKGN 355
Query: 307 -YSGVLIWKTLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGD 346
Y+ +L + + +I C V N M +AV A+ A GD
Sbjct: 356 DYNSLLPY--VHEKVRAIVCLGVDNTPIIQSFYNTIGTLVETRSMDEAVKLAQGFAQEGD 413
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQ 371
I+LSP CASFD F+N+E RG +F+
Sbjct: 414 TILLSPACASFDLFKNYEERGDLFK 438
>gi|313203975|ref|YP_004042632.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Paludibacter
propionicigenes WB4]
gi|312443291|gb|ADQ79647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paludibacter
propionicigenes WB4]
Length = 444
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 188/382 (49%), Gaps = 42/382 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G V+SE++FA + K++ +TG+NGK+T V +L + G++
Sbjct: 75 KAPLVKKLHELGTSVISEIEFAGRYT--KAKMICITGSNGKTTTTMLVYHILKNAGLKVG 132
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+ GN+G L AL + F VVE+SS+Q++ + F ++++LN+TPDHL
Sbjct: 133 LAGNVGQSL--------ALQVATDTFDYYVVELSSFQLDGMTE-FKADIAILLNITPDHL 183
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R++ +NY +K + + + + N + +A R + + F I+
Sbjct: 184 DRYEYNFQNYVDSKFRITQNQTEED-SFIFWENDPVIKAELAKRKIQSTMYPFS---IER 239
Query: 193 EAKTASFEVPAVGVVSQLQL------HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
+T +F ++ L+ ++ + G HN +N+ A L+ + V E++
Sbjct: 240 SERTKAFIEQDELIIKTLKTLFTMPTTDLALQGMHNTYNSMAAGLA--ASIVNVRKESIR 297
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
+++ + HR++ V ++ + +V+DSKATN+ + L +K +IL G
Sbjct: 298 QSLQDFQGVEHRLEYVAT-VKNIRFVNDSKATNVNSCWYALQSMKTPVVLILGGTDKGND 356
Query: 307 YSGV----------LIWKTLVN-------NGLSIPCFAVANMKDAVNHARRMATNGDAIV 349
YS + LI+ L N +G V +M+DAV A +A +GD ++
Sbjct: 357 YSEIEELVKANVKALIFMGLDNSPLHKFFDGKIERIVDVQSMEDAVKEAYGLAESGDTVL 416
Query: 350 LSPGCASFDEFRNFEHRGMVFQ 371
LSP CASFD F+N+E RG F+
Sbjct: 417 LSPCCASFDLFKNYEDRGQQFK 438
>gi|410096278|ref|ZP_11291266.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
goldsteinii CL02T12C30]
gi|409226615|gb|EKN19522.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
goldsteinii CL02T12C30]
Length = 444
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 187/383 (48%), Gaps = 44/383 (11%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 75 KAPIIQKLKAQGTHIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGLDVG 132
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 133 LAGNVGNSL--------ALQVAEEPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDH 182
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-----P 186
L+R+ M+NY K + + + + + + I R A + F
Sbjct: 183 LDRYNYEMQNYVDAKFRIIQNQTSEDAFIFWNDDPIIAREI-AKRHPAATLYPFAETHED 241
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK T+ K E L + + G HN +N+ + ++ +DI E +
Sbjct: 242 GVKGYTDNKQIVIETSNGTFTMDQDL--LALTGTHNLYNSLASGIASKVVDIHD--ENIR 297
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-F 305
+++ HR++ V R ++GV +++DSKATN+ + L + K V++LGG K
Sbjct: 298 ASLSDFTGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALQSMTT-KLVLILGGTDKGN 355
Query: 306 GYSGV----------LIWKTLVN-------NGLSIPCFAVANMKDAVNHARRMATNGDAI 348
YS + LI+ + N +G +M++AVN A ++A GD +
Sbjct: 356 DYSEIEELVKQKVRALIFLGVDNAKLHAFFDGKVAQIEDARSMEEAVNKAYKLAEKGDTV 415
Query: 349 VLSPGCASFDEFRNFEHRGMVFQ 371
+LSP CASFD F+++E RG F+
Sbjct: 416 LLSPCCASFDLFKSYEDRGDQFK 438
>gi|451344324|ref|ZP_21913384.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eggerthia
catenaformis OT 569 = DSM 20559]
gi|449337038|gb|EMD16206.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eggerthia
catenaformis OT 569 = DSM 20559]
Length = 447
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 182/374 (48%), Gaps = 39/374 (10%)
Query: 21 LLQSGKRVMSELDFAAQV-IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
L Q G V +E++ A Q+ +P++ +AVTGTNGK+T V+ + ++L + GN G
Sbjct: 88 LKQRGIPVYTEIELAYQMALPQNY--IAVTGTNGKTTTVSLIYEVLKRHHSAVHICGNYG 145
Query: 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
P + +S VVE+S++Q+ I F P VS VLNLTPDHL+ ++
Sbjct: 146 IPYCDVVLDYKLYENSGHD---VVVEMSNFQL-IDIDLFHPHVSSVLNLTPDHLDYMDSL 201
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTAS 198
Y +K ++ + + L + L E +K + + + F + D E
Sbjct: 202 DEYYASKMRIYENTDLQDIYALNLDDFTLQEYLKRYPVPCS-VETFSVLHHADCELINDI 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
V+++ ++K++G HN N V+ +++ G+ ++ + I + HR
Sbjct: 261 IYYKGEPVIAR---SDIKIVGLHNVSNIMVSIIALRHA--GLSLQDIKEGISLFHGVEHR 315
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
++ V R+++GV + +DSK TN +A + H ++L+GG K
Sbjct: 316 LEFV-REVKGVQYYNDSKGTNTDAAVIAIKAFD-HSVILLMGGHEKGLDIRDVAQYNDRI 373
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
FG SG K + N+ + C +M++AV A ++A GD ++LSP +SFDE
Sbjct: 374 KILITFGESGERFAKDM-NHPHTYIC---EHMREAVIKASQLAIEGDIVLLSPSTSSFDE 429
Query: 360 FRNFEHRGMVFQEL 373
F+N RG VF+E+
Sbjct: 430 FKNMAERGNVFKEM 443
>gi|422023489|ref|ZP_16369994.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Providencia
sneebia DSM 19967]
gi|414094257|gb|EKT55927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Providencia
sneebia DSM 19967]
Length = 441
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 168/350 (48%), Gaps = 44/350 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M GI VGGN+G P AL Q+ V+
Sbjct: 112 IIAITGSNGKSTVTTLVGEMAKPSGISVGVGGNIGIP---------ALSLLNQGHQLYVL 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + VLN+T DH++R+ + ++ Y K H++ + N +
Sbjct: 163 ELSSFQLETTTS-LQALAATVLNVTEDHMDRYPSGLEQYREAKLHIYDNAQNCVV----- 216
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
N + H+ + +I +F D T + A G V L + ++ + G+HNY
Sbjct: 217 -NAQDPLTLPRHKMKVPYI-SFGVNSGDYYFDTQKRVLVAKGEV-LLDVDSIHLTGQHNY 273
Query: 224 HNAAVAALSVLGLDI-GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
NA A DI GVD A ++ HR Q+V + GV W++DSKATN+ +
Sbjct: 274 TNALAALALA---DIAGVDRSASLDVLKHYTGLEHRFQLVLFN-NGVRWINDSKATNVGS 329
Query: 283 TCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA------------- 327
T L LK + +LLGG K +S + + L + + CF
Sbjct: 330 TEAALNGLKVDGVLHLLLGGDGKSADFSSLKPY--LAKKNVRLYCFGKDGAQIAQLEPEK 387
Query: 328 ---VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ + + + GD ++LSP CAS D+F+NFE RG +F +LA
Sbjct: 388 AHLTETMEQGIRYLAPLIKEGDMVLLSPACASIDQFKNFEQRGAIFAQLA 437
>gi|298377157|ref|ZP_06987111.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
3_1_19]
gi|298266141|gb|EFI07800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
3_1_19]
Length = 445
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 185/386 (47%), Gaps = 50/386 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 76 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 134 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFP-- 186
L+R+ M+NY K + + TK F N E K H + A
Sbjct: 184 LDRYNYEMQNYVDAKFRILQNQ--TKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETYE 241
Query: 187 -GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
GVK TE E V ++ + + G HN +N+ + ++ +DI E +
Sbjct: 242 NGVKGYTENNQVVIET--VNGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHD--EKI 297
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF 305
+++ HR++ V R ++GV +++DSKATN+ + L + +IL G
Sbjct: 298 RASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSMTTPVVLILGGTDKGN 356
Query: 306 GYSGVLIWKTLVNNGLSIPCF--------------AVANMKDA------VNHARRMATNG 345
YS + + LVN + F VAN++DA V A +MA G
Sbjct: 357 DYSEI---EELVNKKVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKG 413
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQ 371
D ++LSP CASFD F+++E RG F+
Sbjct: 414 DTVLLSPCCASFDLFKSYEDRGDQFK 439
>gi|398898348|ref|ZP_10648268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM50]
gi|398184402|gb|EJM71855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM50]
Length = 448
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 167/356 (46%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +KV
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRNFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAEFKDLRDPVAANCRAVILMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G +P V ++ +AV R +A GDA++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDGVPLVRVGSLIEAVAQCRAIAEKGDAVLLSPACASFDMFKNYEDRGHQF 440
>gi|418744835|ref|ZP_13301180.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
santarosai str. CBC379]
gi|410794166|gb|EKR92076.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
santarosai str. CBC379]
Length = 462
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 170/366 (46%), Gaps = 57/366 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ VTGT+GKST + +L + GGNLG P + I+L AV
Sbjct: 103 KIIGVTGTDGKSTTTSLTAHLLRKDFSDLREGGNLGTPFTSFCKKPISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ++ N VSV LNL PDHLERH TM+NY K + + + N L+
Sbjct: 154 LELSSYQLDDSNPLHL-DVSVFLNLAPDHLERHTTMENYFQAKLKI-ADLQNENHFLI-- 209
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
++E IK NLA T A A + + + + ++++
Sbjct: 210 ----VSEKIKERILNLASFRCKLLSFGRTSASDAFLDENSSKIGTSKFVYDISGFHLPGT 265
Query: 224 HNAAVAALSVLGLD-IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
HN A S+L + IG E++ + I + + PHR QI QG+++++DSK+TNL +
Sbjct: 266 HNGENLAASILAAEAIGGKPESIQAQIPLFKGLPHRFQIAGEK-QGISFINDSKSTNLHS 324
Query: 283 TCTGLMDLKG-HKCVILLGGQAK-------FGYSG------VLI------WKTLVNNGLS 322
G+ K + ++LGG+ K + + VLI W+ + N +
Sbjct: 325 MLAGMSTWKNLDRTCLILGGRPKQEDPRPLYDFLNRKIGCVVLIGEARSFWEEGIRNAIG 384
Query: 323 IPCFAVANMKDAV----------------NHARRMATNGD--AIVLSPGCASFDEFRNFE 364
F+V ++ +A N R+ + + ++V SP CASFD+++NFE
Sbjct: 385 EKLFSVESLNEAFEIFKKGNIVSEPSRPSNRKIRLTNSAEITSVVFSPACASFDQYKNFE 444
Query: 365 HRGMVF 370
RG F
Sbjct: 445 ERGNHF 450
>gi|335040563|ref|ZP_08533689.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caldalkalibacillus
thermarum TA2.A1]
gi|334179533|gb|EGL82172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caldalkalibacillus
thermarum TA2.A1]
Length = 450
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 159/348 (45%), Gaps = 31/348 (8%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGK+T T + +ML + GN+G E A ++P Q V
Sbjct: 108 IIGITGSNGKTTTTTLIYEMLKDSDPPPLIAGNIGTVFCEVA------ARARPG-QWLVT 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q++ F P + V+LN+ HL+ H T + Y K LF++ L +
Sbjct: 161 ELSSFQLQ-GTTAFHPKIGVLLNIFDAHLDYHGTKQAYIEAKAKLFANQTPDDLAVFNLD 219
Query: 165 NQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ + + W + P E + V L + +++ G HN
Sbjct: 220 QEETRRVADAVKAQVVWFSTRSHPERGAYVEDGRIKYRNKLGEVTDVLAANEVRLPGTHN 279
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N VAA++V L+ G +E + + PHR+Q V R+++GV + +DSKATN A
Sbjct: 280 LENV-VAAVAV-SLEAGAKLERVREVLRNFTGVPHRLQFV-RELRGVRYYNDSKATNALA 336
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVL-IWKTLVNNGLSIP----------------- 324
T L G +I G Y G+ ++K+ V +
Sbjct: 337 TKKALESFSGRVVLIAGGLDRGDDYRGLTTVFKSRVKALIVYGQVAGKLAEIGYKAGVKH 396
Query: 325 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
F V N+K+AVN A ++A GD ++LSP AS+D+F +FE RG +F +
Sbjct: 397 VFHVDNVKEAVNVAHQIAEQGDTVLLSPAAASWDQFSSFEERGDMFTD 444
>gi|443642438|ref|ZP_21126288.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. syringae B64]
gi|443282455|gb|ELS41460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. syringae B64]
Length = 448
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 173/364 (47%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDMLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN NA A G +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHNQTNALAALAL--GHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVAKHCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVPLVRVDTVQAAVEHSAKLALRGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|398859371|ref|ZP_10615048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM79]
gi|398237066|gb|EJN22829.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM79]
Length = 448
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 169/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +KV
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V R++ GV++ +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRNFAGLEHRCQWV-RELNGVSYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGAEFKDLRDPVAANCRAVILMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P V ++ +AV R +A GDA++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRVGSLIEAVAQCRAIAEKGDAVLLSPACASFDMFKNYEDRGHQF 440
>gi|359683875|ref|ZP_09253876.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
santarosai str. 2000030832]
gi|418755293|ref|ZP_13311500.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
santarosai str. MOR084]
gi|409964304|gb|EKO32194.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
santarosai str. MOR084]
Length = 462
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 171/366 (46%), Gaps = 57/366 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ VTGT+GKST + +L + GGNLG P + I+L AV
Sbjct: 103 KIIGVTGTDGKSTTTSLTAHLLRKDFSDLREGGNLGTPFTSFCKKPISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ++ N VSV LNL PDHLERH TM+NY K + + + N L+
Sbjct: 154 LELSSYQLDDSNPLHL-DVSVFLNLAPDHLERHTTMENYFQAKLKI-ADLQNENHFLI-- 209
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
++E IK NLA T A A + + + + ++++
Sbjct: 210 ----VSEKIKERILNLASFRCKLLSFGRTSASDAFLDENSSKIGTSKFVYDISGFHLPGT 265
Query: 224 HNAAVAALSVLGLD-IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
HN A S+L + IG E++ + I + + PHR QI + QG+++++DSK+TNL +
Sbjct: 266 HNGENLAASILAAEAIGGKPESIQAQIPLFKGLPHRFQIAG-EKQGISFINDSKSTNLHS 324
Query: 283 TCTGLMDLKG-HKCVILLGGQAK-------FGYSG------VLI------WKTLVNNGLS 322
G+ K + ++LGG+ K + + VLI W+ + N +
Sbjct: 325 MLAGMSTWKNLDRTCLILGGRPKQEDPRPLYDFLNRKIGCVVLIGEARSFWEEGIRNAIG 384
Query: 323 IPCFAVANMKDAV----------------NHARRMATNGD--AIVLSPGCASFDEFRNFE 364
F+V ++ +A N R+ + + ++V SP CASFD+++NFE
Sbjct: 385 EKLFSVESLNEAFEIFKKGNIVSEPSRPSNRKIRLTNSAEITSVVFSPACASFDQYKNFE 444
Query: 365 HRGMVF 370
RG F
Sbjct: 445 ERGNHF 450
>gi|51473598|ref|YP_067355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
typhi str. Wilmington]
gi|383752377|ref|YP_005427477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
typhi str. TH1527]
gi|383843214|ref|YP_005423717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
typhi str. B9991CWPP]
gi|60390366|sp|Q68WW9.1|MURD_RICTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|51459910|gb|AAU03873.1| D-glutamate ligase [Rickettsia typhi str. Wilmington]
gi|380759020|gb|AFE54255.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
typhi str. TH1527]
gi|380759861|gb|AFE55095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
typhi str. B9991CWPP]
Length = 457
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 184/371 (49%), Gaps = 44/371 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++S++D + +++K +A+TGTNGKST + +LN G++ V GN+G P +A
Sbjct: 90 IISDIDLLFEK-SKNLKFIAITGTNGKSTTAALISHILNSNGLDYTVAGNIGVPALQA-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+SK + V+E+SS+Q+++ K F V+V+LN+TPDHL+R++ M Y K
Sbjct: 147 -----KASKDGY---VLELSSFQLDLV-KIFTVKVAVLLNITPDHLDRYQDMNGYIAAKA 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEA-IKGHRFNLAWIGAFPGVKI-DTEAKTASFEVPAVG 205
+F M ++ N + + + R L + F KI + ++
Sbjct: 198 KIFDRMDKDSYAVINIDNDYCRKIFLLLQREQLIKLIPFSVTKILNNGISIVDDKIHDNN 257
Query: 206 VVSQLQLHNMKVMGRHNYHN-AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ +L L N + G HN N AA A+S + IGV+ + + +I ++ HRMQ +
Sbjct: 258 LTYKLPL-NKNLQGLHNCENIAASYAVSKI---IGVESKKILESISSFQSLHHRMQYIGS 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG--QAKFGYSGVLIW--------- 313
I +++ +DSKATN + L +K + L G + G G+ +
Sbjct: 314 -INNISFYNDSKATN---AISALQSIKALDNIYWLAGGIPKEGGIEGIKPYFNKIKKAYF 369
Query: 314 ----KTLVNNGLS--IPCFAVANMKDAVNHARRMATNGDA----IVLSPGCASFDEFRNF 363
KT+ N I C N++ A N A + A + + I+L+P C+S+D+F+NF
Sbjct: 370 YGQAKTMFANTAKNIIDCVICDNLEYAFNIAYKDAVSDNTEIKNILLAPSCSSYDQFKNF 429
Query: 364 EHRGMVFQELA 374
E RG +F +L+
Sbjct: 430 EERGELFIKLS 440
>gi|387121181|ref|YP_006287064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415756273|ref|ZP_11481011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416038508|ref|ZP_11574159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416044367|ref|ZP_11574994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416055534|ref|ZP_11579588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416071304|ref|ZP_11583769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|429733334|ref|ZP_19267581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans Y4]
gi|444333734|ref|ZP_21149452.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|347994966|gb|EGY36196.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347996252|gb|EGY37355.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347998646|gb|EGY39557.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002942|gb|EGY43604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|348655844|gb|EGY71275.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385875673|gb|AFI87232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429155066|gb|EKX97767.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans Y4]
gi|443551351|gb|ELT59253.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 434
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 189/408 (46%), Gaps = 75/408 (18%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA LQ+G V+ +++ + + I +A+TG+NGKSTV
Sbjct: 61 WLLESDLIVISPGLAVKTPEIQTALQAGVEVLGDIELFCREADKPI--VAITGSNGKSTV 118
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G+ +GGN+G P AL ++ + V+E+SS+Q+E Y
Sbjct: 119 TTLVAEMAKAAGLRVGMGGNIGIP---------ALSLLNQQYDLYVLELSSFQLE--TTY 167
Query: 118 FCPTV-SVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL-LP--------- 162
V + VLN+T DH+ R+ +++Y K ++++H ++N + L LP
Sbjct: 168 SLKAVAATVLNVTEDHMNRYMDLQDYRHAKLNIYNHCQTAVINAEDALTLPATQRPQKQV 227
Query: 163 -FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
FG H + +K N ++ A+ EA A E MK+ GRH
Sbjct: 228 SFGENHADYWLKTEN-NKTYLMAYD------EAVLACDE--------------MKLTGRH 266
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
NY NA A G+++ + + + HR Q+ H GV W++DSKATN+
Sbjct: 267 NYMNALAAIALAQA--AGINLTGIRTALCAFGGLEHRFQVAHI-ADGVRWINDSKATNVG 323
Query: 282 ATCTGLMDLK-GHKCVILLGGQAK---FGYSGVLIWKTLVN------NGLSIPCFAV-AN 330
+T L L+ K +LLGG K F LI + +N +G + + +
Sbjct: 324 STVAALTGLQVAGKLHLLLGGDGKGADFSELARLINQPHINCYCFGRDGKQLAALSSQSQ 383
Query: 331 MKDAVNHA----RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+ D + HA R GD ++LSP CAS D+F FE RG F L+
Sbjct: 384 LFDTMEHAIAAIRPQLQAGDMVLLSPACASLDQFSCFEARGDEFTRLS 431
>gi|395445253|ref|YP_006385506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida ND6]
gi|388559250|gb|AFK68391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida ND6]
Length = 450
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 167/359 (46%), Gaps = 54/359 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 113 IIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP---------ALDLLADDIELYVL 163
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 164 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 222
Query: 161 ---LPF-GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
LP G + F AF ++D E K +FE + + +K
Sbjct: 223 SRPLPVEGRPCWTFGLNSPDFK-----AFGLREVDGE-KYLAFEFQTL-----MPARELK 271
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V G HN NA A G+ E + + + HR Q V R+ GV W DDSK
Sbjct: 272 VRGAHNQSNALAALALG--HAAGLPFEPMLAALREFGGLAHRCQWV-RERNGVNWYDDSK 328
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK-------------FGYSGVLIWKTLVN- 318
ATN+ A + D++G K V++ GG K F + VL+ +
Sbjct: 329 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGAEFTALREPVKRFCRAVVLLGRDAERL 387
Query: 319 ---NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
G ++P V + DAV +A GDA++LSP CAS D F+NFE RG +F + A
Sbjct: 388 AEALGDAVPLVRVKTLDDAVQQCAELAQAGDAVLLSPACASLDMFKNFEERGRLFAQAA 446
>gi|345304539|ref|YP_004826441.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodothermus
marinus SG0.5JP17-172]
gi|345113772|gb|AEN74604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodothermus
marinus SG0.5JP17-172]
Length = 455
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 188/398 (47%), Gaps = 66/398 (16%)
Query: 19 ACLLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
A L+Q +R V SE++ A+ I+AVTGTNGK+T + +G + G V
Sbjct: 82 APLVQQARRIGLPVYSEIEVASWFC--RAPIVAVTGTNGKTTTTSLIGYIFRRAGRRTIV 139
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
GN+G P S+ + P + V+EVSS+Q++ F P VSV+LN+TPDHL+
Sbjct: 140 AGNIGYPFSDYVL------DTTPD-DIVVLEVSSFQLD-HVATFRPRVSVLLNITPDHLD 191
Query: 135 RHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI-KGHRFNLAWIGAFPGVKIDT 192
R+ YA +K +F++ + + + ++ + A + HR + F
Sbjct: 192 RYNYNFNEYAQSKFRIFANQRDADVLVYNHDDELIRMAAERAHRKRGLRVLGF------- 244
Query: 193 EAKTASFEVPAVGVVSQ--------------LQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
+ E+PA V + + + + GRHN +N+ AA++ +++
Sbjct: 245 ---SQRTELPAGAFVRDGYLILRIEQQEEVLMHANELALRGRHNLYNSLAAAVAARVMEV 301
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
DV + ++ PHR++ V R++ GV +V+DSKATN+ A L + C I+
Sbjct: 302 RNDV--VRESLASFEGVPHRLEFV-RELDGVRYVNDSKATNVNAVWYAL---ESFSCPIV 355
Query: 299 L--GGQAKFGYSGVL-----------------IWKTLVNNGLSIP-CFAVANMKDAVNHA 338
L GG+ K VL K L G +P +M++A+ +A
Sbjct: 356 LIAGGRDKGNDYSVLKPLVKEKVRALVAIGESADKLLRELGPLVPHAVKAQSMEEAIQYA 415
Query: 339 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
R A GD ++LSP CASFD F N+E RG F+ L S
Sbjct: 416 RVFAEPGDVVLLSPACASFDMFENYEDRGDTFRRLVMS 453
>gi|427408252|ref|ZP_18898454.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sphingobium
yanoikuyae ATCC 51230]
gi|425713591|gb|EKU76604.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sphingobium
yanoikuyae ATCC 51230]
Length = 437
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 163/350 (46%), Gaps = 53/350 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ--- 100
K++ +TGTNGKST + ++ G A +GGN+G P+ + +P
Sbjct: 110 KVVGITGTNGKSTTTALIHHIIEQAGFPARMGGNIGLPI-------LGQEPLEPNLHGMG 162
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
V V+E+SSYQ+++ + C V+V+LN+TPDHL+R+ Y +K LF+ + +
Sbjct: 163 VYVLELSSYQIDLTHSLDC-DVAVLLNITPDHLDRYNGFAGYVASKARLFAMQSADHVAV 221
Query: 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ ++ P I A EV A + QL + G
Sbjct: 222 IATEDE-------------------PSRGIAASAPAQLREVKAADIDPDAQLGWPSLQGP 262
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN NAAVA +G +G+D + + + + PHRMQ V GV +V+DSKATN
Sbjct: 263 HNAQNAAVAI--AVGRALGIDDATIMAALASYASLPHRMQAVGTH-NGVLYVNDSKATNA 319
Query: 281 EATCT--GLMDLKGHKCVI--LLGGQAKFG--------YSGVLIWKTLVNNG-----LSI 323
+T G + K I +LGG AK Y + T+ G L
Sbjct: 320 ASTAPALGAWPARDGKPRIHWILGGVAKSDNLDECAPYYGNIAHAYTIGEAGHMFADLLR 379
Query: 324 PCFAVAN---MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
P AV + + AV A R+A GD ++LSP CASFD+FR+FE RG F
Sbjct: 380 PHMAVDDSEMLSAAVRRAARIAQPGDVVLLSPACASFDQFRDFEARGDAF 429
>gi|431795709|ref|YP_007222613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Echinicola
vietnamensis DSM 17526]
gi|430786474|gb|AGA76603.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Echinicola
vietnamensis DSM 17526]
Length = 449
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 171/372 (45%), Gaps = 48/372 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ EL+FA R +++A+TGTNGK+T ++ G++ +GGN+G +
Sbjct: 89 VIDELEFAYG-FSRG-RVIAITGTNGKTTTAMLTYHLMKTGGLDVGLGGNVGQSWASQLV 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
V+EVSS+Q++ + P V+V+ N+TPDHL+R+ M +Y +K
Sbjct: 147 QG--------DHDWWVLEVSSFQID-GFRSLKPKVAVLTNITPDHLDRYDYKMDHYVQSK 197
Query: 147 CHLFSHMVNTKLGLLPFGNQH-------LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
L M + +QH +N K H +L IG G+ TE K +F
Sbjct: 198 LGLLKQMDEEDDFIYYREDQHTWQGMSQINVRPKIHEISLETIGKDGGLFNGTEVKL-NF 256
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ + + M + G HN N A S L G+ EAL + + + PHRM
Sbjct: 257 RNHMISIPER----EMAMKGNHNMLNVMCA--STAALLAGISEEALKAGLADFKNAPHRM 310
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNN 319
++V R+++GVT+++DSK TN++AT L K + +I + G G + + ++
Sbjct: 311 ELV-RELEGVTFINDSKGTNVDATVYALSTFK--EPLIWIAGGVDKGNDYETLMPVVKDH 367
Query: 320 GLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFDEF 360
+ C N M AV GD ++LSP CASFD F
Sbjct: 368 VKVLICLGKDNKKLKTAFEGVVPEILETQEMAAAVQWGLEKGAKGDVVLLSPACASFDLF 427
Query: 361 RNFEHRGMVFQE 372
+N+E RG F+E
Sbjct: 428 KNYEDRGDQFKE 439
>gi|421522851|ref|ZP_15969491.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida LS46]
gi|402753344|gb|EJX13838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida LS46]
Length = 448
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 167/359 (46%), Gaps = 54/359 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP---------ALDLLADDIELYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 ---LPF-GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
LP G + F AF ++D E K +FE + + +K
Sbjct: 221 SRPLPVEGRPCWTFGLNSPDFK-----AFGLREVDGE-KYLAFEFQTL-----MPARELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V G HN NA A G+ E + + + HR Q V R+ GV W DDSK
Sbjct: 270 VRGAHNQSNALAALALG--HAAGLPFEPMLAALREFGGLAHRCQWV-RERNGVNWYDDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK-------------FGYSGVLIWKTLVN- 318
ATN+ A + D++G K V++ GG K F + VL+ +
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGAEFTALREPVKRFCRAVVLLGRDAERL 385
Query: 319 ---NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
G ++P V + DAV +A GDA++LSP CAS D F+NFE RG +F + A
Sbjct: 386 AEALGDAVPLVRVKTLDDAVQQCAELAQAGDAVLLSPACASLDMFKNFEERGRLFAQAA 444
>gi|397697094|ref|YP_006534977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
DOT-T1E]
gi|397333824|gb|AFO50183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
DOT-T1E]
Length = 446
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 167/359 (46%), Gaps = 54/359 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 109 IIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP---------ALDLLADDIELYVL 159
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 160 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 218
Query: 161 ---LPF-GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
LP G + F AF ++D E K +FE + + +K
Sbjct: 219 SRPLPVEGRPCWTFGLNSPDFK-----AFGLREVDGE-KYLAFEFQTL-----MPARELK 267
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V G HN NA A G+ E + + + HR Q V R+ GV W DDSK
Sbjct: 268 VRGAHNQSNALAALALG--HAAGLPFEPMLAALREFGGLAHRCQWV-RERNGVNWYDDSK 324
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK-------------FGYSGVLIWKTLVN- 318
ATN+ A + D++G K V++ GG K F + VL+ +
Sbjct: 325 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGAEFTALREPVKRFCRAVVLLGRDAERL 383
Query: 319 ---NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
G ++P V + DAV +A GDA++LSP CAS D F+NFE RG +F + A
Sbjct: 384 AEALGDAVPLVRVKTLDDAVQQCAELAQAGDAVLLSPACASLDMFKNFEERGRLFAQAA 442
>gi|148549594|ref|YP_001269696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida F1]
gi|148513652|gb|ABQ80512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
F1]
Length = 450
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 167/359 (46%), Gaps = 54/359 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 113 IIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP---------ALDLLADDIELYVL 163
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 164 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 222
Query: 161 ---LPF-GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
LP G + F AF ++D E K +FE + + +K
Sbjct: 223 SRPLPVEGRPCWTFGLNSPDFK-----AFGLREVDGE-KYLAFEFQTL-----MPARELK 271
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
V G HN NA A G+ E + + + HR Q V R+ GV W DDSK
Sbjct: 272 VRGAHNQSNALAALALG--HAAGLPFEPMLAALREFGGLAHRCQWV-RERNGVNWYDDSK 328
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK-------------FGYSGVLIWKTLVN- 318
ATN+ A + D++G K V++ GG K F + VL+ +
Sbjct: 329 ATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGAEFTALREPVKRFCRAVVLLGRDAERL 387
Query: 319 ---NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
G ++P V + DAV +A GDA++LSP CAS D F+NFE RG +F + A
Sbjct: 388 AEALGDAVPLVRVKTLDDAVQQCAELAQAGDAVLLSPACASLDMFKNFEERGRLFAQAA 446
>gi|456875047|gb|EMF90281.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
santarosai str. ST188]
Length = 462
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 175/382 (45%), Gaps = 59/382 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D KI+ VTGT+GKST + +L + GGNLG P +
Sbjct: 89 VFSEIDLGRFFFKG--KIIGVTGTDGKSTTTSLTAHLLRKDFSDLREGGNLGTPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ++ N VSV LNL PDHLERH TM+NY K
Sbjct: 147 KPISL---------AVLELSSYQLDDSNPLHL-DVSVFLNLAPDHLERHTTMENYFQAKL 196
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+ + + N L+ ++E IK NLA T A A + + +
Sbjct: 197 KI-ADLQNENHFLI------VSEKIKESILNLASFRCKLLSFGRTSASDAFLDENSSKIG 249
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ ++++ HN A S+L + IG E++ + I + + PHR QI
Sbjct: 250 TSKFVYDISGFHLPGTHNGENLAASILAAEAIGGKPESIQAQIPLFKGLPHRFQIAGEK- 308
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK-------FGYSG------VLI 312
QG+++++DSK+TNL + G+ K + ++LGG+ K + + VLI
Sbjct: 309 QGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPKQEDPRPLYDFLNRKIGCVVLI 368
Query: 313 ------WKTLVNNGLSIPCFAVANMKDAV----------------NHARRMATNGD--AI 348
W+ + N + F+V ++ +A N R+ + + ++
Sbjct: 369 GEARSFWEEGIRNAIGEKLFSVESLNEAFEIFKKGNIVSETSRPSNRKIRLTNSAEITSV 428
Query: 349 VLSPGCASFDEFRNFEHRGMVF 370
V SP CASFD+++NFE RG F
Sbjct: 429 VFSPACASFDQYKNFEERGNHF 450
>gi|158320410|ref|YP_001512917.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Alkaliphilus
oremlandii OhILAs]
gi|167017286|sp|A8MH34.1|MURD_ALKOO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|158140609|gb|ABW18921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
oremlandii OhILAs]
Length = 454
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 46/379 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++ E++ A ++ I +A+TGTNGK+T + VG++ + G V GN+G
Sbjct: 90 LRARGIEIIGEIELAYRLAQGHI--VAITGTNGKTTTTSLVGEIFKNAGRRTHVVGNIG- 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTM 139
AF AL ++ V V+E SS+Q+E I + F P V +LNLTPDHL RHKTM
Sbjct: 147 ----VAFISKALETTAD--DVIVIEASSFQLESIVD--FRPQVGAILNLTPDHLNRHKTM 198
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF----PGVKIDTEAK 195
+NY K ++F + + ++ + + L E K + GV ++
Sbjct: 199 ENYQKAKFNIFKNQGAEDIAVINYDDVKLREESKQIYAKKVYFSRRTLLEEGVFVEDGKI 258
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
A + ++S+ ++ + G HN NA A + + L +GVD++ + T++ +
Sbjct: 259 VALKDGHKKEIISK---DDIFIPGNHNLENALAA--TAMTLSLGVDIDVIQHTLKTFKGV 313
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL--GGQAK--------F 305
HR +IV I GV +++DSK TN +A+ G ++G ILL GG K
Sbjct: 314 EHRTEIVDV-IHGVRFINDSKGTNPDASIKG---IEGINTPILLIAGGYDKGSDFDEFIN 369
Query: 306 GYSG----VLIWKTLVNNGLS-------IPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
+ G + ++ N + I V N+ +AV A +A GD ++LSP C
Sbjct: 370 AFDGKVKHMFVYGETANTLMETAKKLNFIDVTKVQNLDEAVKKAYDIAIQGDTVLLSPAC 429
Query: 355 ASFDEFRNFEHRGMVFQEL 373
AS+D + NFE RG F+E+
Sbjct: 430 ASWDMYENFEMRGKHFKEI 448
>gi|423722747|ref|ZP_17696900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
merdae CL09T00C40]
gi|409242020|gb|EKN34785.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
merdae CL09T00C40]
Length = 453
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 185/382 (48%), Gaps = 42/382 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++A
Sbjct: 84 KAPIIKKLKEKGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTMLTYHILRQAGVDAG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 142 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----- 186
L+R+ M+NY K + + + + + I R A + F
Sbjct: 192 LDRYNYEMQNYVDAKFRIIRNQTAEDAFIFWNDDPIIAREI-AKRHPQATLYPFAETHEA 250
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK TE K E + L + + G HN +N+ + ++ DI E L
Sbjct: 251 GVKGYTEDKKIIIETSNGTFTMEEDL--LALSGTHNLYNSLASGIASKLEDIHD--ENLR 306
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
+++ HR++ V R ++GV +++DSKATN+ + L + +IL G
Sbjct: 307 ASLSDFTGVEHRLEKVAR-VRGVDYINDSKATNVNSCWYALQSMTTPLVLILGGTDKGND 365
Query: 307 YSGV----------LIWKTLVNNGL------SIPCFAVA-NMKDAVNHARRMATNGDAIV 349
YS + LI+ + N L +P A +M++AV A ++A GD ++
Sbjct: 366 YSEIEELVKKKVHALIFLGVDNAKLHGFFDGKVPVIEDARSMEEAVAKAYKLAEKGDTVL 425
Query: 350 LSPGCASFDEFRNFEHRGMVFQ 371
LSP CASFD F+++E RG F+
Sbjct: 426 LSPCCASFDLFKSYEDRGDQFK 447
>gi|378578138|ref|ZP_09826818.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Pantoea
stewartii subsp. stewartii DC283]
gi|377819247|gb|EHU02327.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Pantoea
stewartii subsp. stewartii DC283]
Length = 438
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 168/369 (45%), Gaps = 80/369 (21%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP---------ALSLLKAPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + +LN+T DH++R+ M+ Y K ++ + +VN G
Sbjct: 158 ELSSFQLET-TYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDG 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + G+ HLN+ + W+ A G K+
Sbjct: 217 MTMPVRGADARCVSFGIDIGDYHLNK-----QQGSVWLRA-KGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L M ++G+HNY NA A +GL + AL + + HR Q+V
Sbjct: 257 -----LNTDEMTLVGQHNYTNALAALALADAVGLPRSTSLSALAAYSGL----AHRFQLV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGL 321
H +GV W++DSKATN+ +T L L+ + +LLGG K L L + +
Sbjct: 308 HES-RGVRWINDSKATNVGSTEAALKGLQVDGTLWLLLGGDGKSADFSPL-QPYLQGDRI 365
Query: 322 SIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 365
+ CF +++A+ + GD ++LSP CAS D+FRNFE
Sbjct: 366 RLFCFGRDGDALAALRPDVAVRTETLQEAMAQIAKQVQPGDMVLLSPACASLDQFRNFEQ 425
Query: 366 RGMVFQELA 374
RG VF +LA
Sbjct: 426 RGDVFAQLA 434
>gi|331268360|ref|YP_004394852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
botulinum BKT015925]
gi|329124910|gb|AEB74855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
botulinum BKT015925]
Length = 458
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 176/380 (46%), Gaps = 53/380 (13%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+SG + SE++ + P K+ +TG++GK+T T V ML G + +VGGN+GNPL
Sbjct: 99 ESGSYITSEMEEFIKYCPA--KVFGITGSDGKTTTTTLVYNMLKSEGYKTWVGGNIGNPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
A K V+E+SS+Q M I C ++V NL+P+HL+ HK M+
Sbjct: 157 -------FANIEEMTKADKVVLELSSFQLMTIKEDMNC---ALVTNLSPNHLDIHKDMEE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT-ASFE 200
Y K ++F + L +L N+ N+ + + G I E A F+
Sbjct: 207 YVDAKKNIFKYQNENDLLVLNKDNKITNDLVNEAK------GKVKQFSIKEEIHNGAYFK 260
Query: 201 VPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ ++ + L +K+ G HN N +AA ++ D+ ++ + HR
Sbjct: 261 NDKLFILDKEVCALEEIKLKGMHNVENL-LAAFCLVNEDVSIN--NMRKVAISFTGVEHR 317
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------AKFGY- 307
+ V R++ GV + +DS A++ T GL K VIL+ G A+ GY
Sbjct: 318 CEFV-RELDGVKYYNDSIASSPTRTIAGLRAF--EKPVILIAGGYDKHIPFEPLAEEGYD 374
Query: 308 -------SGVLIWK-------TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
+GV K + N IP + V ++A+ A+ ++ GD + LSP
Sbjct: 375 KIKALILTGVTKEKIKKAFDNVIENKPYKIPIYMVERFEEAIYKAKEISKAGDIVTLSPA 434
Query: 354 CASFDEFRNFEHRGMVFQEL 373
CASFD F NFE RG F+++
Sbjct: 435 CASFDMFANFEIRGNKFKDI 454
>gi|197334972|ref|YP_002156999.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
fischeri MJ11]
gi|226722954|sp|B5FB37.1|MURD_VIBFM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|197316462|gb|ACH65909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
MJ11]
Length = 440
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 185/379 (48%), Gaps = 60/379 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G +++ +++ A + + ++A+TG+NGKSTV G+M G++ VGGN+G
Sbjct: 89 IDKGIQIVGDIELFAWAV--NAPVIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG-- 144
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL + ++ V+E+SS+Q+E + + LNL+ DH++R++ M +
Sbjct: 145 -------FAALDLLEQDAELYVLELSSFQLETTSTLKLK-AAAFLNLSEDHMDRYQGMAD 196
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQH----LNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +F H ++ ++ ++ + + +K F+ G I+ AK A
Sbjct: 197 YRQAKLRIFDH---AEVCIVNRDDKQTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKDA 253
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP 255
+S L + + ++G+HN N+ A+A L +G++ L++T++ LRT
Sbjct: 254 ---------MSLLAANELGLVGKHNIANSLVAIALLDAVGIN-------LDATLDTLRTY 297
Query: 256 ---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHKCVILLGGQAKFGYSGV 310
HR Q+V D G+ WV+DSKATN+ +T L + L+G K +L+GG K G
Sbjct: 298 NGLTHRCQVV-ADNNGIRWVNDSKATNVASTLAALSGLQLEG-KLHLLVGGVGK-GADFS 354
Query: 311 LIWKTLVNNGLSIPCFA---------------VANMKDAVNHARRMATNGDAIVLSPGCA 355
+ L + L + CF M +AV GD ++LSP CA
Sbjct: 355 ELSPALHDLNLMMYCFGEDGDQFVSLDPRSLLCETMDEAVATLYPTLNKGDMVMLSPACA 414
Query: 356 SFDEFRNFEHRGMVFQELA 374
SFD++ NF RG F +LA
Sbjct: 415 SFDQYANFMARGDAFTQLA 433
>gi|187251915|ref|YP_001876397.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
minutum Pei191]
gi|226711909|sp|B2KEW4.1|MURD_ELUMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|186972075|gb|ACC99060.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
minutum Pei191]
Length = 452
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 179/369 (48%), Gaps = 38/369 (10%)
Query: 29 MSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL------GIEAFVGGNLGNPL 82
SE++ + +P+ +I AVTGTNGK+T + ++L F GN+G PL
Sbjct: 94 FSEIEISISFLPKGCRIFAVTGTNGKTTTTMLLSEILKQFIKNKEFNKNVFTVGNIGCPL 153
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+E S + + V+EVSSYQ+E + YF P + +LN+TPDH++ H + K Y
Sbjct: 154 AEVM-------SEIKQHDLIVMEVSSYQLE-DSSYFKPYAATILNITPDHIDHHGSFKKY 205
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F + ++ +++ +A K + L P +I + ++
Sbjct: 206 LDAKSKIFKFQTQKDIAVINSADKNCLKAAKNIKSKLYGFATTPLQQIRSHV---FYDGD 262
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ + ++ K+ G HN NA A+L L GVD +++ +T HR++++
Sbjct: 263 ELVFSAGERISPPKLPGIHNVENAMAASLLALAA--GVDSQSIQQAFNKFKTVEHRIELL 320
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAKFGYSGVL---------- 311
+G+++++DSKATN+++T L + G K ++LGGQ K GVL
Sbjct: 321 GIK-KGISFINDSKATNIDSTIIALRSMPDGKKTWLILGGQDKGSPYGVLLPLLETKCKK 379
Query: 312 ---IWKTLVNNGLSIPCFAVAN----MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
+ + +P + N + AV +A A D I+LSP CASFD+F NFE
Sbjct: 380 VLLVGQAAAKIKKDLPGYKYFNVCGTIDKAVEYAFNNAQKEDIILLSPACASFDQFNNFE 439
Query: 365 HRGMVFQEL 373
RG F+++
Sbjct: 440 ERGKFFKQI 448
>gi|87301212|ref|ZP_01084053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. WH 5701]
gi|87284180|gb|EAQ76133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. WH 5701]
Length = 463
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 173/389 (44%), Gaps = 53/389 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L + G RV E+ A + I + +TGTNGK+TV + +LNH G++A + GN
Sbjct: 91 LKALRERGVRVCGEMSVAWEA-SNEIPWIGITGTNGKTTVTHLLSHILNHAGLDAPMVGN 149
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +E ++ P + VVE+SSYQ+E + P + + LTPDHLERH
Sbjct: 150 VGISAAELLIERREAGATPPDW--LVVELSSYQIE-SSAELAPRLGLWTTLTPDHLERHG 206
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKID 191
T++ Y K L + G Q LN A G W+ A G +
Sbjct: 207 TLEAYRAIKRSLLQNC----------GEQLLNADDADLRAHAGSWDRATWVTA--GTRRL 254
Query: 192 TEAKTASFEVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
A F G+V + + G HN N +AA + L L G++ +
Sbjct: 255 LGAGLQPFLWIDGGMVMAASGPLFSAAALALPGAHNRQNMVLAAATALKL--GLEPAVIE 312
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-- 304
+ + PHR++ + R + GV W +DSKATN +A G+ + G V+L GG+ K
Sbjct: 313 AALRSFPGVPHRLEQI-RLLDGVRWFNDSKATNYDAAEVGITAVDG-PMVVLAGGEIKQG 370
Query: 305 ------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN-- 344
FG + L +G + V +AV AR +A
Sbjct: 371 DPEAWLEALGRQAAAVVLFGAAREAFAALLSGSGYAGTVELVEGQAEAVPLARELARRLG 430
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
++LSP CASFD++++FE RG F+ L
Sbjct: 431 CPTVLLSPACASFDQYKDFEARGEHFRTL 459
>gi|340783400|ref|YP_004750007.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
caldus SM-1]
gi|340557551|gb|AEK59305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
caldus SM-1]
Length = 454
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 168/356 (47%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS-KPKFQVAV 103
I A+TG+NGKSTV T +G+M G VGGNLG P + LP + P+ ++ V
Sbjct: 111 IAAITGSNGKSTVTTLLGEMAKAAGRRVAVGGNLGTPALD------LLPEAGAPEPELYV 164
Query: 104 VEVSSYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159
+E+SS+Q+ ++C P V+ +LNL+PDHL+ H M+ Y K +F M
Sbjct: 165 LELSSFQL-----HYCHALRPRVAAILNLSPDHLDWHGDMEAYLAAKARIFRTMGEGDTL 219
Query: 160 LLPFGNQHLNE-------AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
+L + L ++ RF G P ++DT A + P+ + + L
Sbjct: 220 VLNGEDPALQSLPAKAPAGVEIRRF-----GHTP--QLDTWADDLALHWPS---AAPMPL 269
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
++ + G+HN N V A +++ + + A+ R PHR+Q V R + GV +
Sbjct: 270 ADIHLPGKHNGEN--VLAAALMANALNLPETAIRQAAADFRGLPHRLQWVAR-VGGVDYY 326
Query: 273 DDSKATNLEATCTGLMDLKGHKCVILLGGQAK-----------FGYSGVL-------IWK 314
DDSK TNL A+ + L G V++LGG AK G G + I +
Sbjct: 327 DDSKGTNLGASLRAIQALPG-PLVLILGGDAKGADLSPLREALRGQRGAVLLGKDAAILE 385
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
++ L M AV A MA GD ++LSP CAS D FR++ RG F
Sbjct: 386 AILAGSLPTLRIGEGGMSRAVRAAAAMAQPGDQVLLSPACASLDMFRDYRDRGRQF 441
>gi|170739957|ref|YP_001768612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Methylobacterium sp. 4-46]
gi|168194231|gb|ACA16178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
sp. 4-46]
Length = 460
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 166/366 (45%), Gaps = 72/366 (19%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+A+TGTNGKST + +L G + +GGN+G A +A PS + +V V+E
Sbjct: 117 VAITGTNGKSTTTALIAHVLRETGHDVQMGGNIGT-----AILSLAPPS---RDRVHVIE 168
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
+SS+Q+++ P++ V+LN+TPDHL+RH TM+NYA K L + + +G+ +
Sbjct: 169 MSSFQIDL-TPTLAPSIGVLLNVTPDHLDRHGTMENYAAIKERLVAGADHAVIGV----D 223
Query: 166 QHLNEAIKGHR------------FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH 213
AI R I A G+ ID A+ + G+ S
Sbjct: 224 DDYTRAISARRDGPLTRVHVGEGAEAPGILARHGLLIDGTAEPPAPVADLTGIAS----- 278
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
+ G HN+ NAAVA GL GV +A + PHRM+ V R GV +++
Sbjct: 279 ---LRGAHNWQNAAVAYAVARGL--GVAPDAFARALRSFPGLPHRMEEVGRR-GGVLFIN 332
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKD 333
DSKATN ++T L + +LGG+ K G G+ + P A A +
Sbjct: 333 DSKATNADSTEKALAAFP--RVHWILGGKPKEG--GIESLRAY------FPRIARAYLIG 382
Query: 334 AVNHARRMATNGDA--------------------------IVLSPGCASFDEFRNFEHRG 367
A + A G A ++LSP CAS+D+FR+FE RG
Sbjct: 383 AASEAFAATLEGHAPVIRCGTLDRAVARAAEDAAGEPEAVVLLSPACASYDQFRSFEDRG 442
Query: 368 MVFQEL 373
F+ +
Sbjct: 443 DQFRAM 448
>gi|333381686|ref|ZP_08473365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas gadei
ATCC BAA-286]
gi|332829615|gb|EGK02261.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas gadei
ATCC BAA-286]
Length = 444
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 187/383 (48%), Gaps = 58/383 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G ++SE++FA + + K++ +TG+NGK+T + + +L G+ +GGN+G
Sbjct: 83 IEKGIPILSEMEFAKRYT--TAKMICITGSNGKTTTTSLIYHILKSAGLNVGLGGNIG-- 138
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-TM 139
A ++ + V+E+SS+Q+E N Y F ++++LN+TPDHL+R+ +
Sbjct: 139 ------RSFARQVAEENYDYYVLELSSFQLE--NMYSFKADIAILLNITPDHLDRYDHDI 190
Query: 140 KNYALTKCHLFSHMVNTKLGLL----PFGNQHLNEAI-KGHRFNLAW------IGAFPGV 188
+ Y K + + + P ++ + + + KG ++ A I
Sbjct: 191 QKYIDAKMRIVQNQTEADAFIFWEEDPIVSKEIKKLVSKGKQYTFAEHKVGNAIAYLNDH 250
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ID ++F ++ Q L + G HN +N+ + ++ LDI D L +
Sbjct: 251 EIDINTPNSAF------IMEQDLL---ALEGTHNLYNSLASGIAAKLLDITDD--NLRHS 299
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS 308
+ + HR++ V + ++G+ +++DSKATN+ + L +K K V++LGG K G
Sbjct: 300 LSDFQGVEHRLEKVAK-VKGIQFINDSKATNVNSCWYALQSMKT-KVVLILGGTDK-GND 356
Query: 309 GVLIWKTLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIV 349
I + + + ++ V N MK+AV + +A GD ++
Sbjct: 357 YTEIEQLVKDKARALVFLGVDNSKLHKFFDGKVKNIADASSMKEAVEKSYALAEEGDTVL 416
Query: 350 LSPGCASFDEFRNFEHRGMVFQE 372
LSP CASFD F+N+E RG F+E
Sbjct: 417 LSPCCASFDLFKNYEDRGDQFKE 439
>gi|288574849|ref|ZP_06393206.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570590|gb|EFC92147.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 453
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 190/382 (49%), Gaps = 57/382 (14%)
Query: 23 QSGKRVMSELDFAAQVIPR-SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+G +VM E+DF V+P+ K++ VTGTNGK+T + + +L G++A GN+G+P
Sbjct: 89 DAGIKVMGEVDF---VLPKLDGKVVVVTGTNGKTTTTSLIAHLLEVSGLDALALGNIGSP 145
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L + A + V V+E+SS+Q+ K +SV+ N+ PDH++ H + +N
Sbjct: 146 LGDFAGE---------RRDVFVIELSSFQLHWTEKSEF-DISVITNIAPDHIDWHGSYEN 195
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG-------AFPGVKIDTEA 194
Y K SH +T ++ Q + ++ G + + IG G+ I+ E
Sbjct: 196 YISAKKKAISHRRDTGWSIV----QEKDRSLLGGQSDPRTIGLTLENDLKKDGIFINNER 251
Query: 195 KTASFEVPAVGVVSQLQL-HNMKVMGRHNYHNAAVAALS-VLGLDIGVDVEALNSTIEIL 252
A E GV L + + ++G HN NAA+AA + +L +D + +
Sbjct: 252 AIAVIE----GVRHDLFMSKQVPLLGGHNIENAAMAATACILSSSRKID---WSMGLASY 304
Query: 253 RTPPHRMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVL 311
+ PPHR Q IV +D G+++VDDSK TN+ +TCT L + G K V++LGG+ K L
Sbjct: 305 QAPPHRCQFIVEKD--GISYVDDSKGTNVASTCTALRSIPGGK-VVILGGKGKGENYREL 361
Query: 312 IWKTLVNNGLSI----PCFAVAN---------------MKDAVNHARRMATNGDAIVLSP 352
N +I FA+A+ M++AV A R A GD ++LSP
Sbjct: 362 ALAVKDNCRYAILLGEERFAIADALKEQNVTDWQMVESMEEAVVKASRRAKRGDTVLLSP 421
Query: 353 GCASFDEFRNFEHRGMVFQELA 374
C S+D + ++ RG F LA
Sbjct: 422 ACTSWDMYGSYRERGDHFSGLA 443
>gi|54310305|ref|YP_131325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium profundum SS9]
gi|60390455|sp|Q6LMF4.1|MURD_PHOPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|46914746|emb|CAG21523.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Photobacterium profundum SS9]
Length = 447
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 115/403 (28%), Positives = 185/403 (45%), Gaps = 62/403 (15%)
Query: 3 MLWLFLLEFQLKATGLACLL-------QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKS 55
M WL + + + G+A +G ++ +++ A+V+ + + +A+TG+NGKS
Sbjct: 63 MNWLLEADLIVASPGIALATPELVAAKAAGIEIVGDIELFARVVTKPV--VAITGSNGKS 120
Query: 56 TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPN 115
TV + +G+M GI VGGN+G AL + + V+E+SS+Q+E +
Sbjct: 121 TVTSLIGEMAKEAGINVGVGGNIG---------FAALDMLVNEHDLYVLELSSFQLETTS 171
Query: 116 KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV-----NTKLGLLP--FGNQHL 168
+V LNL+ DH++R+ +++Y+L K +F H L P F +Q
Sbjct: 172 SLQLKA-AVYLNLSEDHMDRYNGLEDYSLAKMRIFEHAELAVYNRDDLATFPVSFSHQIT 230
Query: 169 NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228
+ + L V + E A E P ++ ++ ++GRHN N+
Sbjct: 231 SFGFDNQDYGL--------VTLHGEEFLALDEQPI------MKTSDIALVGRHNVANSLA 276
Query: 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL- 287
A ++I D +A+ ++ HR Q+V V WV+DSKATNL +T L
Sbjct: 277 ALALADAVNI--DRQAVCRALQRYNGLAHRCQLVVNQ-HDVKWVNDSKATNLASTLAALK 333
Query: 288 -MDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA---------------VANM 331
++L G K +L+GG K G + L + + + CF + M
Sbjct: 334 GLNLPG-KLHLLVGGDGK-GADFSELKLVLADLNVQLYCFGRDGNQFMPLVDAPICIETM 391
Query: 332 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
A+ A A GD I+LSP CASFD+F NF RG F E A
Sbjct: 392 AQAMAIAADTAQKGDMILLSPACASFDQFPNFMARGDAFIEQA 434
>gi|350530213|ref|ZP_08909154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
rotiferianus DAT722]
Length = 437
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 173/388 (44%), Gaps = 70/388 (18%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G +V+ +++ A ++ + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQAVLAKGTQVVGDIELFAWIVDKPV--IAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R+
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETTSSLKLK-AAAFLNLSEDHMDRYD 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F N +L ++ +Q FP V D T
Sbjct: 193 GMADYRQAKLRIFD---NAELAIVNRDDQE----------------TFPDV--DMPIVTF 231
Query: 198 SFEVPAVGVVSQLQL-----HNMKVM--------GRHNYHNAAV--AALSVLGLDIGVDV 242
+ A G+ S Q H +V+ G+HN NA V A L G+D
Sbjct: 232 GCDDQAYGLESDGQRTWLLDHGQRVIASDELMLVGKHNLANALVVLALLKAAGVDY---Y 288
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGG 301
ALN+ ++ HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG
Sbjct: 289 NALNA-LKTYTGLTHRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGG 346
Query: 302 QAKFGYSGVLIWKTLVNNGLSIPCFAVA---------------NMKDAVNHARRMATNGD 346
K G + L + CF V M+D + GD
Sbjct: 347 VGK-GADFTPLKPIFATLNLQLCCFGVDGDEFMPLHESATRFDTMEDVIQQISSQLKTGD 405
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQELA 374
++LSP CASFD+F NF RG F LA
Sbjct: 406 MVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|422668857|ref|ZP_16728710.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|330981219|gb|EGH79322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aptata str. DSM 50252]
Length = 448
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 176/355 (49%), Gaps = 50/355 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L F G++ + K +F+ + + + +KV
Sbjct: 221 ---SRPLIGEGLPCWTFGLNKPDFNGF-GLREENGEKYLAFQFENL-----MSVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ +++ HR Q + R+ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQ-------------AKFGYSGVLIWKT--LVNN 319
N+ A + D+ G K V++ GG AK+ + VL+ + L+
Sbjct: 329 NVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVAKYCRAAVLLGRDAELIAQ 387
Query: 320 GL--SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
L ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG VF +
Sbjct: 388 ALGDAVPLVRVDTVQAAVEHSAKLALRGDAVLLSPACASLDMFKNYEERGRVFAQ 442
>gi|33863701|ref|NP_895261.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9313]
gi|60390535|sp|Q7V5V5.1|MURD_PROMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33635284|emb|CAE21609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9313]
Length = 460
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 181/388 (46%), Gaps = 46/388 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G + E+ A + + + +A+TGTNGK+TV + +L G+ A +GGN
Sbjct: 86 LTALRQRGIDIDGEMAVAWRSLSH-LPWIAITGTNGKTTVTHLLNHVLESNGLRAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ +E A + +P + V+E+SSYQ+E + P + + NLTPDHLERH
Sbjct: 145 VGHAAAEVALKWRQPNAQRPDW--LVMELSSYQIEAAPE-IAPRMGIWTNLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-PGVKIDTEAKT 196
T+ Y K L +++ + + L L W+ + PG T
Sbjct: 202 TLDAYRTIKRGLLE---RSEIRIFNGDDPDLRSQRSSWDKGL-WVSSEGPG----TANHR 253
Query: 197 ASFEVPAVGVVSQLQ-----LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A F + A G+V + Q + + G+HN N + ++ G+ +A+ +++
Sbjct: 254 ADFWIDAEGLVREPQGALFAASALAMPGQHNLQN--LLLVTAAARQTGLPAKAIEASLRS 311
Query: 252 LRTPPHRM-QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------ 304
PHR+ Q+ H IQ ++ +DSKATN +A C GL + V+L GGQ K
Sbjct: 312 FPGVPHRLEQLGH--IQQMSVYNDSKATNYDAACVGLKAVP-PPAVVLAGGQTKQGDASG 368
Query: 305 --------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA--I 348
FG + + + +G S +N+ AV A + A +
Sbjct: 369 WLKQLDQNACAVILFGAGASELQELIKTSGFSGELHCCSNLNAAVTLAIPLGVERQAACL 428
Query: 349 VLSPGCASFDEFRNFEHRGMVFQELAFS 376
+LSP CASFD++++FE RG F+ L S
Sbjct: 429 LLSPACASFDQYQDFEARGEHFRSLISS 456
>gi|406884994|gb|EKD32299.1| hypothetical protein ACD_77C00134G0010 [uncultured bacterium]
Length = 444
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/382 (26%), Positives = 188/382 (49%), Gaps = 54/382 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+ SG V+SE++FA + + K + +TG+NGK+T + + +L + G+ + GN+G
Sbjct: 82 ITSSGIPVISEIEFAGRY--DNAKKICITGSNGKTTTTSIIYFLLKNAGLNVGLAGNIG- 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH-KT 138
A + ++ V+E+SS+Q++ Y F ++V+LN+TPDHL+R+
Sbjct: 139 -------QSYAFQVATREYDYYVLELSSFQLD--GMYDFKADIAVLLNITPDHLDRYGNN 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQ----HLNEAIKGHRFNLAWIGAFPGVKIDTEA 194
M+NY K + +M + + ++ HLN+ + + P +I+
Sbjct: 190 MENYIKAKFRITRNMSSEDCFIFCADDEISISHLNKIVVQAK-------KLPFSQINEVE 242
Query: 195 KTASFEVPAVGVVS-----QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+ A + VV Q+ ++ + + G+HN +N+ AA++ G + + E L ++
Sbjct: 243 EGAFLRDEKMNVVYNNDSYQMFVNELSLQGKHNIYNSMAAAIT--GKILHIKDEVLRESL 300
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG 309
+ HR++ + + ++ V +++DSKATN+ +T L +K VI + G G
Sbjct: 301 TSFKGVEHRLENILK-VKNVLYINDSKATNVNSTWYALESMK--TPVIWIAGGKDKGNDY 357
Query: 310 VLIWKTLVNNGLSIPCFAVANMK-------------------DAVNHARRMATNGDAIVL 350
+++ + + + C V N K +AV A ++A +GD ++L
Sbjct: 358 EPLYELVKDKVRVLICLGVDNAKLHKEFAGKVDEIYDAGSAQEAVETAYKVAKSGDTVLL 417
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CASFD F+N+E RG F+E
Sbjct: 418 SPACASFDLFKNYEDRGKQFKE 439
>gi|298207886|ref|YP_003716065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Croceibacter
atlanticus HTCC2559]
gi|83850527|gb|EAP88395.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Croceibacter atlanticus HTCC2559]
Length = 445
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 182/371 (49%), Gaps = 46/371 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++SE++FA++ +I + +TG+NGK+TV + +L G+ A VGGN+G+ ++
Sbjct: 90 IVSEIEFASEFTNATI--IGITGSNGKTTVTRWTHHILKEGGLNASVGGNIGDSFAKQ-- 145
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
+AL S+ V+E+SS+Q++ K F P ++++ N+TPDHL+R+ Y +K
Sbjct: 146 --VALSPSEN----YVLELSSFQLD-DIKNFRPHIAIITNITPDHLDRYDYDFSKYVASK 198
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
+ + N + N+ +N+ ++ H + P + A E + +
Sbjct: 199 FRITMNQTNDDYLIYDADNEAINDYLEAHTIQPKLV---PFSTTKSLKYGAYIEHNELII 255
Query: 207 -VSQLQLH----NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + ++H ++ + G HN NA ++ + L I + + ++ + HR++
Sbjct: 256 NIDENKIHMPIDSLALKGTHNQKNAMASSSAAKMLKIRK--QTIRESLANFQGVEHRLEH 313
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGL 321
V + I V +++DSKATN+ AT L + I+ G YS + LVN +
Sbjct: 314 VLK-INNVNYINDSKATNVNATFYALESMSSDTIWIVGGVDKGNDYSQL---NALVNEKV 369
Query: 322 -SIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
+I C V N M +A+ A ++ GDA++LSP CASFD F+
Sbjct: 370 KAIICLGVDNQKILKAFNNCVDIMVETQSMSEAIKIAYKIGERGDAVLLSPACASFDLFK 429
Query: 362 NFEHRGMVFQE 372
N+E RG F+E
Sbjct: 430 NYEDRGRQFKE 440
>gi|398852596|ref|ZP_10609248.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM80]
gi|398243685|gb|EJN29267.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM80]
Length = 448
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 164/353 (46%), Gaps = 50/353 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 T---RPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVAYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKFGYSGVLIWKTLVNN--------------- 319
N+ A + D+ G K +++ GG K L N
Sbjct: 329 NVGAALAAIEGLGADIDG-KVILIAGGDGKGAEFNDLRDPVAANCRAVILMGRDSDKIGA 387
Query: 320 --GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
G ++P ++ DAV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AIGDAVPLIRATSLVDAVAQCRAAAQPGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|407793137|ref|ZP_11140172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Idiomarina
xiamenensis 10-D-4]
gi|407215497|gb|EKE85336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Idiomarina
xiamenensis 10-D-4]
Length = 451
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 178/370 (48%), Gaps = 47/370 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ +++ AQ R ++A+TG+NGKSTV VG++L G A VGGN+G P
Sbjct: 98 GITLVGDIELYAQASQR--PVIAITGSNGKSTVTQLVGELLAAAGKRAAVGGNIGTP--- 152
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AL + V V+E+SS+Q+E P +V+LN++ DHL+R+ ++ +Y
Sbjct: 153 ------ALSLLDQQADVDVLELSSFQLE-STYSLRPDAAVILNISADHLDRYLSLADYIN 205
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT------EAKTAS 198
K +F N K ++ + H K A + +F G + D E + +S
Sbjct: 206 AKQRIFQ---NAKHIVINRDDSHTRPLQKTQ----ASVSSF-GQQADKHGFCLREEQGSS 257
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ +G L+ ++ + G HN N +AA L + +DV ++ + + PHR
Sbjct: 258 W--LCLGSEKLLRSDDIALQGVHNLMN--IAAALALVQALAIDVHSVLDAVRVFPGLPHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNL---EATCTGLMDLKGHKCVILLGGQAK----FGYSGVL 311
Q++ + Q V WV+DSKATN+ EA GL L K V++ GG K ++ L
Sbjct: 314 CQLLKQQ-QQVAWVNDSKATNVGAAEAAIYGLRPLVAGKLVLIAGGDGKGADFTSFADAL 372
Query: 312 IW-KTLVNNGLSIPCFA--------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
L+ G P A V ++ +AV A + ++LSP CASFD F
Sbjct: 373 KQVDELITLGRDGPRIAELKAGSHQVQDLTEAVALAAELVGQQGTVLLSPACASFDMFNG 432
Query: 363 FEHRGMVFQE 372
F HRG VF +
Sbjct: 433 FAHRGEVFSD 442
>gi|389685757|ref|ZP_10177080.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
chlororaphis O6]
gi|388550099|gb|EIM13369.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
chlororaphis O6]
Length = 448
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 167/358 (46%), Gaps = 60/358 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTDQ-LGAEVATVLNISEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
Q + E + F L+ AF G++ + K +FE + + + +K
Sbjct: 216 RQDALTRPLIGEGLPCWTFGLSKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSK
Sbjct: 270 IRGAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVGYYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLI 312
ATN+ A + D++G K V++ GG K G I
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KIVLIAGGDGKGAEFKDLRDPVAANCRAVILMGRDSDKI 385
Query: 313 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ + G ++P V ++ +AV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 386 GEAI---GDAVPLIRVGSLVEAVAQCRATAQAGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|377577162|ref|ZP_09806145.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
hermannii NBRC 105704]
gi|377541690|dbj|GAB51310.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
hermannii NBRC 105704]
Length = 438
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 116/369 (31%), Positives = 170/369 (46%), Gaps = 80/369 (21%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G+ VGGN+G P AL P+ ++ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVSVGVGGNIGLP---------ALMLLDPEKELYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + VLN+T DH++R+ ++ Y K ++ + +VN
Sbjct: 158 ELSSFQLETTYSLRAKAAN-VLNVTEDHMDRYPFGLQQYRAAKLKIYENAQVCVVNADDA 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
L + G+ HLN H+ W+ G KI
Sbjct: 217 LTMPVRGADERCVSFGIDVGDYHLN-----HQQGDTWL-RVKGEKI-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L MK++GRHNY N AA+A +GL ++AL + + HR Q+
Sbjct: 257 -----LNAKEMKIVGRHNYTNALAALALADAVGLPRSSSLQALTTFTGL----AHRFQLA 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGL 321
+ D GV W++DSKATN+ +T L L + +LLGG K L + L N +
Sbjct: 308 Y-DHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPL-NRYLQGNNI 365
Query: 322 SIPCFA------------VANMKDAVNHARRMATN----GDAIVLSPGCASFDEFRNFEH 365
+ CF VA + + A R+ GD ++LSP CAS D+F+NFE
Sbjct: 366 HLYCFGRDGAELAALRPEVATRTNTMEEAMRIIAGKVQPGDMVLLSPACASLDQFKNFEQ 425
Query: 366 RGMVFQELA 374
RG VF LA
Sbjct: 426 RGDVFTRLA 434
>gi|304396561|ref|ZP_07378442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
gi|440760743|ref|ZP_20939846.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea
agglomerans 299R]
gi|304356070|gb|EFM20436.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
gi|436425496|gb|ELP23230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pantoea
agglomerans 299R]
Length = 438
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 167/352 (47%), Gaps = 46/352 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP----ALSLLQSPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + VLN++ DH++R+ M+ Y K ++ N ++ ++
Sbjct: 158 ELSSFQLET-TYSLKAAAATVLNVSEDHMDRYPLGMQQYRAAKLRVYE---NAQICIVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGA-FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G F ++ + + V V L MK++G+HN
Sbjct: 213 ADDALTMPVRGADTRCVSFGVDFGDYHLNKQQGSIWLRVKGEKV---LNTAEMKMVGQHN 269
Query: 223 YHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y NA A +GL + AL HR Q+VH QGV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRASSLAALTH----FNGLAHRFQLVHEH-QGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA----------- 327
+T L L+ + +L+GG K ++ ++ W L + + + CF
Sbjct: 325 GSTEAALNGLQVQGTLWLLMGGDGKSADFTPLIPW--LQGDNVRLYCFGRDGDALAALRP 382
Query: 328 -----VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ GD ++LSP CAS D+FRNFE RG F +LA
Sbjct: 383 DIAVRTETMRQAMEQIAPQVNAGDMVLLSPACASLDQFRNFEQRGEQFAQLA 434
>gi|329964558|ref|ZP_08301612.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
fluxus YIT 12057]
gi|328524958|gb|EGF52010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
fluxus YIT 12057]
Length = 466
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 184/377 (48%), Gaps = 46/377 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G+
Sbjct: 104 LKEKGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGS 161
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 162 SL--------ALQVATEKHDYYIIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 211
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + P + L +K H + A + GV E
Sbjct: 212 MQNYVDAKFRITQNQTPDDAFIYWNDDPIIKRELAKHGLKAHLYPFAAVKK-DGVIAYVE 270
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G+ E + + +
Sbjct: 271 DGEVEINEP---IAFNMEQEELALRGTHNLYNSLAAGISA-NL-AGIRKEYIRKALSDFK 325
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV-- 310
HR++ V ++GV +++DSKATN+ + L + K V++LGG+ K Y+ +
Sbjct: 326 GVEHRLEKVAT-VRGVQFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTEIED 383
Query: 311 --------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLSPGC 354
L++ L N L +P V MKDAV+ A R+A G+ ++LSP C
Sbjct: 384 LVRKNCSGLVYLGLHNEKLHEFFDRMGLPVADVQTGMKDAVDAAFRLAKKGETVLLSPCC 443
Query: 355 ASFDEFRNFEHRGMVFQ 371
ASFD F+++E RG F+
Sbjct: 444 ASFDLFKSYEDRGDQFK 460
>gi|421616043|ref|ZP_16057062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri KOS6]
gi|421618010|ref|ZP_16058991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri KOS6]
gi|409780005|gb|EKN59650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri KOS6]
gi|409782225|gb|EKN61792.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri KOS6]
Length = 447
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 109/357 (30%), Positives = 166/357 (46%), Gaps = 58/357 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G + VGGNLG P AL ++ V+
Sbjct: 110 IIAITGSNAKSTVTTLVGEMAAAAGRKVAVGGNLGTP---------ALDLLADDIELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + V+ LN++ DH++R+ + Y K +F +
Sbjct: 161 ELSSFQLET-TEQLNAEVATCLNISEDHMDRYSGLPAYHQAKHRIFRGARQVVVNR---- 215
Query: 165 NQHLNEAIKGHRFNLAWIG----AFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ L+ + G G F G + E K +F+ A+ + + ++K+
Sbjct: 216 DDRLSRPLVGEDVPTWTFGLGKPDFKGFGLFEENGEKYLAFQFDAL-----MPVRDLKMR 270
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG-VTWVDDSKA 277
G HN NA A LG +G+ E + +T+ PHR Q V ++G V++ DDSKA
Sbjct: 271 GAHNQSNALAA--LALGHAVGLPFEPMLATLRQFAGLPHRCQWVG--LRGEVSYYDDSKA 326
Query: 278 TNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIW 313
TN+ A + D+ G K V++ GG K G L+
Sbjct: 327 TNVGAALAAIEGLGADIDG-KLVLIAGGDGKGADFSGLRAPVARYCRAVILLGRDAQLLA 385
Query: 314 KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
LV+ + P VA +++AV A + GDA++LSP CAS D FRNFE RG +F
Sbjct: 386 DALVD---AAPLVRVATLEEAVQRASEFSVAGDAVLLSPACASLDMFRNFEERGRLF 439
>gi|417917769|ref|ZP_12561328.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis SK236]
gi|342830406|gb|EGU64745.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis SK236]
Length = 449
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 179/370 (48%), Gaps = 42/370 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + V V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASQVA-------QTATEKDVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + + G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTVEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ V ++ + V G HN N A+A ++V + GV+ E + T+ H
Sbjct: 260 KFKGEVV-----MRADELGVPGSHNVEN-ALATIAVAKVR-GVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI----- 312
R+Q V +IQGV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPHITG 371
Query: 313 WKTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
K +V G S +P A++ DA A +A+ GD ++LSP AS+D +
Sbjct: 372 LKEMVILGESAPRVKRAADKAGVPYVDAADVADATKKAFDLASPGDVVLLSPANASWDMY 431
Query: 361 RNFEHRGMVF 370
NFE RG F
Sbjct: 432 PNFEVRGDEF 441
>gi|90416334|ref|ZP_01224266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium HTCC2207]
gi|90332059|gb|EAS47273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
proteobacterium HTCC2207]
Length = 450
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 174/359 (48%), Gaps = 58/359 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++ +TG+NGKSTV VG+M G++ VGGNLG P+ L + Q+ V+
Sbjct: 112 VVLITGSNGKSTVTKLVGEMAQASGLKVGVGGNLGTPM---------LDLLDDENQLYVI 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF---SHMVNTKLGLL 161
E+SS+Q+E+ +S +LN++PDH++R+ ++ Y K +F S ++ + L
Sbjct: 163 ELSSFQLELVTDTRG-AISAILNISPDHMDRYADLQQYHAAKHRIFRGASQVIFNRQDAL 221
Query: 162 PFGNQHLNEAIKG-----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
N L+ A+K +R +LA G +D E +T A G+ ++ +
Sbjct: 222 T--NPLLSVAVKLCNFGLNRPDLANFGL-----LDEEGETWL----AYGLKPLMRSAELA 270
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ GRHN NA A G+D+ A+ +T+ HR + V + GVT++DDSK
Sbjct: 271 LKGRHNIANALAALALGQ--AAGLDMAAMLTTLTRFTGLSHRCEYVAT-VDGVTYIDDSK 327
Query: 277 ATNLEATCT---GLMDLKGHKCVILLGGQAK--------------------FGYSGVLIW 313
TN+ AT G + +++ GGQ K FG I
Sbjct: 328 GTNIGATVAALNGFGEDDRANLILIAGGQGKGQNFTELKAPLGKFVKLLALFGEDAQSIA 387
Query: 314 KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+TL + +A+++ AV+ AR +A GD ++LSP CASFD F FE RG FQ+
Sbjct: 388 ETLSG---TTQIETLASLQAAVDCARAVAQPGDIVLLSPACASFDMFSGFEERGRCFQQ 443
>gi|398983529|ref|ZP_10690074.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM24]
gi|399015251|ref|ZP_10717527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM16]
gi|398109262|gb|EJL99201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM16]
gi|398157108|gb|EJM45512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM24]
Length = 448
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 164/353 (46%), Gaps = 50/353 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 T---RPLMGEGQPCWTFGLSKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVAYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKFGYSGVLIWKTLVNN--------------- 319
N+ A + D+ G K +++ GG K L N
Sbjct: 329 NVGAALAAIEGLGTDING-KVILIAGGDGKGAEFNDLRDPVAANCRAVILMGRDSDKIGA 387
Query: 320 --GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
G ++P ++ DAV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AIGDAVPLIRATSLVDAVAQCRAAARPGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|322389010|ref|ZP_08062580.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
parasanguinis ATCC 903]
gi|321144315|gb|EFX39723.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
parasanguinis ATCC 903]
Length = 449
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 179/370 (48%), Gaps = 42/370 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + V V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASQVA-------QTATEKDVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + I G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTIEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ AV ++ + V G HN N A+A ++V + GV+ E + T+ H
Sbjct: 260 KFKGEAV-----MRADELGVPGSHNVEN-ALATIAVAKVR-GVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI----- 312
R+Q V +IQGV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPHIAG 371
Query: 313 WKTLVNNGLSIPCFAVA------------NMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
K +V G S P A ++ DA A +A+ GD ++LSP AS+D +
Sbjct: 372 LKEMVILGESAPRVKRAADKAGVSYVDATDVADAAKKAFDLASPGDVVLLSPANASWDMY 431
Query: 361 RNFEHRGMVF 370
NFE RG F
Sbjct: 432 PNFEVRGDEF 441
>gi|423686943|ref|ZP_17661751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
fischeri SR5]
gi|371493702|gb|EHN69302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
fischeri SR5]
Length = 440
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 185/379 (48%), Gaps = 60/379 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G +++ +++ A + + ++A+TG+NGKSTV G+M G++ VGGN+G
Sbjct: 89 IDKGIQIVGDIELFAWAV--NAPVIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG-- 144
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL + ++ V+E+SS+Q+E + + LNL+ DH++R++ M +
Sbjct: 145 -------FAALDLLEQDAELYVLELSSFQLETTSTLKLK-AAAFLNLSEDHMDRYQGMAD 196
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQH----LNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +F H ++ ++ ++ + + +K F+ G I+ AK A
Sbjct: 197 YRQAKLRIFDH---AEVCIVNRDDKQTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKDA 253
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP 255
+S L + + ++G+HN N+ A+A L +G++ L++T++ LRT
Sbjct: 254 ---------MSLLAANELGLVGKHNIANSLVAIALLDAVGIN-------LDATLDTLRTY 297
Query: 256 ---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHKCVILLGGQAKFGYSGV 310
HR Q+V D G+ WV+DSKATN+ +T L + L+G K +L+GG K G
Sbjct: 298 NGLTHRCQVV-ADNNGIRWVNDSKATNVASTLAALSGLQLEG-KLHLLVGGVGK-GADFS 354
Query: 311 LIWKTLVNNGLSIPCFA---------------VANMKDAVNHARRMATNGDAIVLSPGCA 355
+ L + L + CF M +A+ GD ++LSP CA
Sbjct: 355 ELSPALHDLNLMMYCFGEDGDQFVSLDPRSLLCETMDEAIATLYPTLNKGDMVMLSPACA 414
Query: 356 SFDEFRNFEHRGMVFQELA 374
SFD++ NF RG F +LA
Sbjct: 415 SFDQYANFMARGDAFTQLA 433
>gi|424073657|ref|ZP_17811072.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|407995760|gb|EKG36275.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
Length = 448
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 172/364 (47%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MSV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVARHCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVPLLRVDTVQAAVEHSAKLAQRGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|384082071|ref|ZP_09993246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [gamma
proteobacterium HIMB30]
Length = 446
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 178/386 (46%), Gaps = 64/386 (16%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L Q+ ++S++ + P + ++A+TG+N KSTV + V ++L G VGGNLG
Sbjct: 85 LEQTSAHLISDIQVFRRAWPENQPLIAITGSNAKSTVTSLVAEILKADGRHVLVGGNLGP 144
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
+ L + + +AV+E+SS+Q+E + TV+ LN++PDHL+ H +M
Sbjct: 145 -------QALDLLAERTNESIAVLELSSFQLE-RTRRLKATVATCLNMSPDHLDWHGSMI 196
Query: 141 NYALTKCHLFS---------------HMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF 185
Y K +F +V + + F QH + H+F + +
Sbjct: 197 AYHQAKHRIFEGVGAIVVNSDDPLSQPLVPDQTPTIKFALQHPD----FHQFGVMVVDGK 252
Query: 186 PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ + E A E+P + GR+ NA +AA + L +GVD
Sbjct: 253 EWISLGAEPWMAVSELP--------------MSGRYMIQNA-MAAFGICHL-VGVDKAIA 296
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAK 304
+ + PHRM + ++GV +++DSK TN+ A+ T + ++ V LL GG++K
Sbjct: 297 VAAMLEYAGLPHRM-VERAPVKGVRFINDSKGTNVGASATAVSSVEADGHVYLLAGGESK 355
Query: 305 FGYSGVLIWKTLVN-----------------NGLSIPCFAVANMKDAVNHARRMATNGDA 347
+ + IW V + L AV + +A A + A GD
Sbjct: 356 --DADLAIWAKTVRVHCHHVFAFGRDRQRLIDALGDQATAVETLDEAFTLAVQQAAAGDV 413
Query: 348 IVLSPGCASFDEFRNFEHRGMVFQEL 373
++LSP CASFD+F+N++ RG F+ L
Sbjct: 414 VLLSPACASFDQFQNYQARGDYFETL 439
>gi|225023739|ref|ZP_03712931.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
23834]
gi|224943621|gb|EEG24830.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
23834]
Length = 451
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 178/386 (46%), Gaps = 61/386 (15%)
Query: 23 QSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
Q+G RV+ +++ A ++ + KI+A+TG+NGK+TV + VG + G++ V GN+G P
Sbjct: 95 QAGGRVLGDVEILAHELSGKRNKIIAITGSNGKTTVTSLVGHLCRECGLDTVVAGNIGTP 154
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA + V V+E+SS+Q+E + + + VLN++ DHL R+ + +
Sbjct: 155 VLEAYED-----RQEQSADVWVLELSSFQLENTD-HLNAAAAAVLNISEDHLNRYDDLLD 208
Query: 142 YALTKCHLFS----HMVNTKLGLLPFGNQHLNEAIKGHRFNLA-----WIGAFPG-VKID 191
YA K +F ++N L + E RF+L W A G +K
Sbjct: 209 YAHAKDKIFRGSGVQVINADDALCRAMKRSGREV---RRFSLQQETDYWFDAASGYLKHG 265
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
E A+ ++P G LHN + A IG+ E L +
Sbjct: 266 AETLIAAADIPLQG------LHNAANVLAALALCEA----------IGLPREQLLRHVRT 309
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------- 304
+ PHR++ + + GV ++DDSK TN+ AT + L+ ++ GGQ K
Sbjct: 310 FKGLPHRVEKIG-EKNGVVFIDDSKGTNVGATEAAIAGLQ-SPLFLIAGGQGKGQDFTPL 367
Query: 305 -------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 351
G I + L G + A++++AV A R+A GD ++LS
Sbjct: 368 KNVLPGKARAVLLIGEDAPQIRRDLA--GCGVEMMDCASLQEAVQTAYRLAEPGDIVLLS 425
Query: 352 PGCASFDEFRNFEHRGMVFQELAFSA 377
P CASFD F+ + HR VF E AF A
Sbjct: 426 PACASFDMFKGYAHRSQVFIE-AFEA 450
>gi|303228392|ref|ZP_07315225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica ACS-134-V-Col7a]
gi|401679996|ref|ZP_10811920.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
ACP1]
gi|302516894|gb|EFL58803.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
atypica ACS-134-V-Col7a]
gi|400219123|gb|EJO49994.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
ACP1]
Length = 454
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 121/370 (32%), Positives = 175/370 (47%), Gaps = 46/370 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A V I L VTGTNGK+T T + Q++ G+ VGGN+G+ LSEAA+
Sbjct: 95 VVSEVELAYDVCKSPI--LGVTGTNGKTTTTTLLTQVMESTGLPVKVGGNIGDSLSEAAY 152
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
H P+ V E+SSYQ+E K FCP ++VLN+TPDHL RHKTM+NYA K
Sbjct: 153 HM-------PEGGYLVAELSSYQLETI-KSFCPLGAIVLNVTPDHLARHKTMENYAAAKA 204
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT----EAKT--ASFEV 201
+F + +L + + K + I K+D+ E T A +
Sbjct: 205 RIFMNQNPENFVVLNDDDPIVRAMKKDAHSKVLSISQHH--KVDSGAYFEGNTCYAVLDG 262
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
A V+ +H + G HN N + A+ L +GV+VE + IE HR++
Sbjct: 263 KATPVIDTEHIH---IKGSHNIEN--ILAVIALTYALGVEVEHIKHIIEQFHGVEHRLER 317
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V VT+ +DSKATN ++ L D ++L GG K
Sbjct: 318 V-TTFHDVTFYNDSKATNTDSVVKAL-DAFDKPVILLAGGHDKMTPLEDFMNIVKAHTKE 375
Query: 305 ---FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
G + V G+ +MK+AV ++A GD ++LSP C+SFD +
Sbjct: 376 VIFMGEAADRFESVAVKMGVQ-HIHRAQSMKEAVALGYQLAKAGDIVLLSPACSSFDWYS 434
Query: 362 NFEHRGMVFQ 371
FE RG F+
Sbjct: 435 CFEERGEDFK 444
>gi|337281545|ref|YP_004621016.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
parasanguinis ATCC 15912]
gi|335369138|gb|AEH55088.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
parasanguinis ATCC 15912]
Length = 449
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 180/370 (48%), Gaps = 42/370 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + +V V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASQVA-------QTATEKEVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + I G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTIEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ V ++ + V G HN N A+A ++V + V+ E + T+ H
Sbjct: 260 KFKGEVV-----MRADELGVPGSHNVEN-ALATIAVAKVR-SVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI----- 312
R+Q V +IQGV + +DSK+TN+ AT L +K +++ GG + L+
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNILATQKALSGFDNNKVILIAGGLDRGNEFDELVPHITG 371
Query: 313 WKTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
K +V G S +P A++ DA A +A+ GD ++LSP AS+D +
Sbjct: 372 LKEMVILGESAPRVKRAADKAGVPYVDAADVADATKKAFDLASPGDVVLLSPANASWDMY 431
Query: 361 RNFEHRGMVF 370
NFE RG F
Sbjct: 432 PNFEVRGDEF 441
>gi|289677699|ref|ZP_06498589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. syringae FF5]
Length = 448
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 176/361 (48%), Gaps = 62/361 (17%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENSEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQ-------------AKFGYSGVLIWKT 315
+DSKATN+ A + D+ G K V++ GG AK+ + VL+ +
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVAKYCRAAVLLGRD 381
Query: 316 --LVNNGL--SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
L+ L ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG VF
Sbjct: 382 AELIAQALGDAVPLVRVDTVQAAVEHSAKLALRGDAVLLSPACASLDMFKNYEERGRVFA 441
Query: 372 E 372
+
Sbjct: 442 Q 442
>gi|398930636|ref|ZP_10664701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM48]
gi|398164946|gb|EJM53070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM48]
Length = 448
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 167/356 (46%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLRDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGKGAEFKDLRDPVAANCRAVILMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P ++ +AV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRAGSLVEAVEQCRAAAQPGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|254449012|ref|ZP_05062466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium HTCC5015]
gi|198261406|gb|EDY85697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
proteobacterium HTCC5015]
Length = 447
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 167/347 (48%), Gaps = 44/347 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV VG M G+ +GGNLG P AL P + V+
Sbjct: 112 LIAITGSNGKSTVTELVGSMAQSAGMTVAIGGNLGTP---------ALEILAPAVDLYVL 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + P + VLN++ DH++R+ +++ YA K SH +++ ++
Sbjct: 163 ELSSFQLETV-QSLRPKAATVLNISEDHMDRYSSIEAYAAAKAAAISH---SEVAVINRQ 218
Query: 165 NQHLNEAIK-GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
++ + + G R + G ++ A T ++ ++ ++K+ G HN+
Sbjct: 219 DKRVAAMLSDGERVTFGSDSSEAGYGLERLAGTVWLTAQGERLI---EVSDLKICGEHNW 275
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
NA A G+ EA + ++ PHR + V + GV +++DSKATN+ AT
Sbjct: 276 LNALAALALAD--AAGIAREASLAALKEFAGLPHRTEWVA-ERNGVIYINDSKATNVGAT 332
Query: 284 CTGLMDLKGHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSI 323
+ V++ GG K G+ LI + L G +
Sbjct: 333 AAAVTGFD-QPLVLIAGGVGKGQDFAPLKTSLKARAKAVVLLGHDAELIGQAL---GDEV 388
Query: 324 PCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ VA+M +AV+ A +A GD ++LSP CASFD+++ FE RG F
Sbjct: 389 AQYRVASMSEAVSRATELAECGDVVLLSPACASFDQYQGFEARGEDF 435
>gi|312867256|ref|ZP_07727466.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis F0405]
gi|311097385|gb|EFQ55619.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
parasanguinis F0405]
Length = 449
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 178/372 (47%), Gaps = 46/372 (12%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + V V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASQVA-------QTATEKDVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + + G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTVEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ V ++ + V G HN N A+A ++V + GV+ E + T+ H
Sbjct: 260 KFKGEVV-----MRADELGVPGSHNVEN-ALATIAVAKVR-GVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------- 304
R+Q V +IQGV + +DSK+TN+ AT L K +++ GG +
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPHITG 371
Query: 305 ------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
G S + + V + +P A++ DA A +A+ GD ++LSP AS+D
Sbjct: 372 LKEMVILGESAPRVKR--VADKAGVPYVDAADVADATKKAFYLASPGDVVLLSPANASWD 429
Query: 359 EFRNFEHRGMVF 370
+ NFE RG F
Sbjct: 430 MYPNFEVRGDEF 441
>gi|90407782|ref|ZP_01215960.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
sp. CNPT3]
gi|90311142|gb|EAS39249.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
sp. CNPT3]
Length = 445
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 177/373 (47%), Gaps = 43/373 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRS----IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78
+G ++ +++ A+V+ K++ +TG+NGK+TV + +G+M + + +GGN+
Sbjct: 84 DAGCELIGDIELFARVLKTPSYAHAKVVTITGSNGKTTVTSLLGEMASASPLNVAIGGNI 143
Query: 79 GNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT 138
G P AL P + ++E+SS+Q+E ++ +LN++ DHL+R+++
Sbjct: 144 GTP---------ALDLLDPNINLYILELSSFQLETTTS-LNADIATILNISADHLDRYRS 193
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+Y +K ++ + + L+ A+ F A F VK + E
Sbjct: 194 YDHYIQSKHIIYQQCKKALFNIEDAQTKPLSCALDQICFG-AENADFQLVKQNNET---- 248
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
++G + L + +K+ GRHN+ NA A G +G+D + + +E + HR
Sbjct: 249 --FISMGSETLLNVKKLKLSGRHNWMNALAALAL--GDAVGLDKNIMLAVLENYQGLEHR 304
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKFGYSGVLIWKT 315
+ V + + GV W++DSK TN+ AT LM L K ++LGGQ K G L+
Sbjct: 305 CEFVAQ-VHGVRWINDSKGTNVGATQAALMGLSQSISGKVHVILGGQGK-GADFSLLRPV 362
Query: 316 LVNNGLSIPCFA---------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
I CF V ++ AV A + AT GD ++ SP CAS D +
Sbjct: 363 FNEVQGDIFCFGEDAALIASVDPRIQRVDDLAQAVCLAEQAATAGDIVMFSPACASLDMY 422
Query: 361 RNFEHRGMVFQEL 373
+NF RG F+ L
Sbjct: 423 KNFMQRGDHFKTL 435
>gi|298387941|ref|ZP_06997490.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
1_1_14]
gi|383125035|ref|ZP_09945694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
1_1_6]
gi|62900586|sp|Q8A256.2|MURD_BACTN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|251840813|gb|EES68894.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
1_1_6]
gi|298259348|gb|EFI02223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
1_1_14]
Length = 444
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 186/381 (48%), Gaps = 52/381 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + + + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTTDDAFIFWNDDPIIKQELAKHGLKAHLYPFAAVKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISA-NL-AGITKENIRKALS 300
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSG 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 301 DFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTE 358
Query: 310 V----------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLS 351
+ L++ L N L +P V MKDAV A ++A G+ ++LS
Sbjct: 359 IEDLVREKCSALVYLGLHNEKLHAFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLS 418
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CASFD F+++E RG F++
Sbjct: 419 PCCASFDLFKSYEDRGDQFKK 439
>gi|220933947|ref|YP_002512846.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|219995257|gb|ACL71859.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 442
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 172/348 (49%), Gaps = 44/348 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV VG+M G+ VGGN G P A + + ++ V+
Sbjct: 108 VVAITGSNGKSTVTALVGEMARAAGLNVAVGGNFGIP----ALDLL----NDADVELYVL 159
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + P + VLN++ DHL+R++++++YA K +F T+ ++
Sbjct: 160 ELSSFQLET-TESLAPVAATVLNISADHLDRYESLEDYAAAKERIFRR---TETAVINRD 215
Query: 165 NQHLNEAIKGHR-----FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMG 219
+ + G R ++ G + V+ D E A E+P +++ G
Sbjct: 216 DPRVWSMAGGARRVSFGLDVPGEGDWGLVERDAEPWLAQGEIP------WFAESRLRIAG 269
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
RHN NA A G+ EA+ + PHR Q V R + GV+W +DSK TN
Sbjct: 270 RHNTANALAALALGQ--AAGLPGEAMVEALTQFSGLPHRCQWVTR-LHGVSWYNDSKGTN 326
Query: 280 LEATCTGLMDLKGHKCVILLGGQAK------FGYSGVLIWKTLVNNGLS----------- 322
L AT L G + V++ GGQ K G + V + +V G
Sbjct: 327 LGATLAALEGFPG-QVVLIAGGQGKGQDFAPLGDAVVGKARAVVLLGEDAPHIATALDGR 385
Query: 323 IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+P +VA+M+ AV A R+A +GD+++LSP CAS D F N+ HRG VF
Sbjct: 386 VPVVSVASMEAAVAEAARLAQSGDSVLLSPACASLDMFDNYMHRGEVF 433
>gi|388600435|ref|ZP_10158831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
campbellii DS40M4]
Length = 437
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 176/384 (45%), Gaps = 62/384 (16%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQAVLAKGTPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETTSSLKLK-AAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F N +L ++ N+ E +L G+ D +A
Sbjct: 193 GMSDYRQAKLRIFD---NAELAVV---NRDDQETFPDTETSLVTFGS------DEQA--- 237
Query: 198 SFEVPAVGVVSQLQLH--------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+ + A G + L H +K++G+HN NA L VL L DV+ + ++
Sbjct: 238 -YGLEADGNRTWLLDHGQRVIASDELKLVGKHNLANA----LVVLALLKAADVD-YHKSL 291
Query: 250 EILRTPP---HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKF 305
L+T HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K
Sbjct: 292 NALKTYTGLTHRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK- 349
Query: 306 GYSGVLIWKTLVNNGLSIPCFAVA---------------NMKDAVNHARRMATNGDAIVL 350
G + L I CF M+D + GD ++L
Sbjct: 350 GADFTPLKPIFATLNLQICCFGADGDEFMPLHESATRFDTMEDVIQQISSQLKTGDMVML 409
Query: 351 SPGCASFDEFRNFEHRGMVFQELA 374
SP CASFD+F NF RG F LA
Sbjct: 410 SPACASFDQFDNFMARGDAFAALA 433
>gi|383640288|ref|ZP_09952694.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
elodea ATCC 31461]
Length = 379
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 111/350 (31%), Positives = 165/350 (47%), Gaps = 58/350 (16%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++ +TGTNGKST + ++ GI +GGN+G P I P+ V V
Sbjct: 59 RVVGITGTNGKSTTTALIHHIIETAGIPTRLGGNIGLP--------ILGQEPLPEGGVYV 110
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ C V+V+LN+TPDHL+R+ + YA +K LF+ ++
Sbjct: 111 LELSSYQIDLTQSLDC-DVAVLLNITPDHLDRYDGFEGYAASKARLFAMQSKGHAAIIGI 169
Query: 164 GNQH-----LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
G+ A+ G ++ I PGV +D Q +
Sbjct: 170 GDAASATIARRVALSGRAEDVTKIA--PGVCMD-------------------QSRWPALQ 208
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ-IVHRDIQGVTWVDDSKA 277
G HN NA A + L G+D A++ +E PHRM+ I R+ GV +V+DSKA
Sbjct: 209 GPHNAQNALAAIAACEAL--GIDRAAIDRGLESFPGLPHRMERIATRN--GVLFVNDSKA 264
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKF--------GYSGVLIWKTLVNNGL-------- 321
TN E+T L + +LGG AK G+ V+ T+ GL
Sbjct: 265 TNPESTAPALAAYP--RIHWILGGVAKTDSLEACRPGFGHVVRAYTIGEAGLLFAGLLEG 322
Query: 322 SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
+P ++ AV A A GDA++LSP CASFD+FR+FE RG F+
Sbjct: 323 EMPVEQSGTLEAAVRAAAANARPGDAVLLSPACASFDQFRDFEARGDAFR 372
>gi|423304794|ref|ZP_17282793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
uniformis CL03T00C23]
gi|423310092|ref|ZP_17288076.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
uniformis CL03T12C37]
gi|392682732|gb|EIY76074.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
uniformis CL03T12C37]
gi|392683458|gb|EIY76793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
uniformis CL03T00C23]
Length = 443
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 185/377 (49%), Gaps = 46/377 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 81 LKEKGTPIISEIEFAGRYT--DAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 139 SL--------ALQVATEQHDYYVIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 188
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+ Y K + + + + + + + H A + F VK D E
Sbjct: 189 MQKYVDAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGLR-AHLYPFAAVKEDGAIAYVE 247
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G+ E + + +
Sbjct: 248 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISA-NL-AGIRKEYIRKALSDFK 302
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV-- 310
HR++ V ++GV++++DSKATN+ + L + G K V++LGG+ K Y+ +
Sbjct: 303 GVEHRLEKVAT-VRGVSFINDSKATNVNSCWYALQSMTG-KTVLILGGKDKGNDYTEIED 360
Query: 311 --------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIVLSPGC 354
L++ L N + L +P V M+DAV A ++A G+ ++LSP C
Sbjct: 361 LVREKCSALVYLGLHNEKLHAFFDRLGLPVADVQTGMQDAVEAAFKLAKKGETVLLSPCC 420
Query: 355 ASFDEFRNFEHRGMVFQ 371
ASFD F+++E RG F+
Sbjct: 421 ASFDLFKSYEDRGDQFK 437
>gi|168187060|ref|ZP_02621695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
botulinum C str. Eklund]
gi|169295070|gb|EDS77203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
botulinum C str. Eklund]
Length = 458
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 178/386 (46%), Gaps = 65/386 (16%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
SG + SE++ + P +I +TG++GK+T T V +L G +VGGN+GNPL
Sbjct: 99 NSGAYITSEMEEFIKYCP--ARIFGITGSDGKTTTTTLVYNILMTEGYRTWVGGNIGNPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
F I + K V+E+SS+Q M + + C ++V NL+P+HL+ HK M+
Sbjct: 157 ----FASIEEMKEEDK---VVLELSSFQLMTMEEEINC---ALVTNLSPNHLDIHKDMEE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWIGAF-PGVKIDT 192
Y K ++F + N L +L N L E KG R GA+ G K+
Sbjct: 207 YVDAKKNVFKYQENKDLLVLNKDNDITNSLTEEAKGRVMKFSRKEEIKDGAYLNGDKLVL 266
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
K E+ +G ++K+ G HN N +AA ++ D +E++
Sbjct: 267 LGK----EICTLG--------DIKLKGMHNVENL-LAAFCLVSED--ASIESMAKVATTF 311
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ---------- 302
HR + V ++I GV + +DS A++ T GL K VIL+ G
Sbjct: 312 TGVQHRCEFV-KEIDGVKYYNDSIASSPTRTIAGLRAF--EKPVILIAGGYDKHIPFEPL 368
Query: 303 AKFGYSGV---------------LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 347
A+ GY + K + + G+SIP + +A+ A+ +A GD
Sbjct: 369 AEEGYDKIKALVLTGLTKDKIKDAFDKVMKDRGISIPIYMEEGFNEAIYRAKDIAKEGDI 428
Query: 348 IVLSPGCASFDEFRNFEHRGMVFQEL 373
+ LSP CASFD F NFE RG F+E+
Sbjct: 429 VTLSPACASFDMFPNFEIRGNRFKEI 454
>gi|268318243|ref|YP_003291962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodothermus
marinus DSM 4252]
gi|262335777|gb|ACY49574.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
marinus DSM 4252]
Length = 455
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 187/398 (46%), Gaps = 66/398 (16%)
Query: 19 ACLLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
A L+Q +R V SE++ A+ I+AVTGTNGK+T + +G + G V
Sbjct: 82 APLVQQARRIGLPVYSEIEVASWFC--RAPIVAVTGTNGKTTTTSLIGYIFRRAGRRTIV 139
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
GN+G P S+ + P V V+EVSS+Q++ F P VSV+LN+TPDHL+
Sbjct: 140 AGNIGYPFSDYVL------DTTPD-DVVVLEVSSFQLD-HVATFRPRVSVLLNITPDHLD 191
Query: 135 RHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI-KGHRFNLAWIGAFPGVKIDT 192
R+ YA +K +F++ + + ++ + A + HR + F
Sbjct: 192 RYNYNFNEYAQSKFRIFANQRGEDVLVYNHDDELIRMAAERAHRKRGLRVLGF------- 244
Query: 193 EAKTASFEVPAVGVVSQ--------------LQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
+ E+PA V + + + + GRHN +N+ AA++ +++
Sbjct: 245 ---SQRTELPAGAFVRDGYLILRIEQQEEVLMHANELALRGRHNLYNSLAAAVAARVMEV 301
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
DV + ++ PHR++ V R++ GV +V+DSKATN+ A L+ C I+
Sbjct: 302 RNDV--VRESLASFEGVPHRLEFV-RELDGVRYVNDSKATNVNAVWYA---LESFSCPIV 355
Query: 299 L--GGQAKFGYSGVL-----------------IWKTLVNNGLSIP-CFAVANMKDAVNHA 338
L GG+ K VL K L G +P +M++A+ +A
Sbjct: 356 LIAGGRDKGNDYSVLKPLVKEKVRALVAIGESADKLLRELGPLVPHAVKAQSMEEAIQYA 415
Query: 339 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
R A GD ++LSP CASFD F N+E RG F+ L S
Sbjct: 416 RVFAEPGDVVLLSPACASFDMFENYEDRGDTFRRLVMS 453
>gi|384228224|ref|YP_005619959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
aphidicola str. Ua (Uroleucon ambrosiae)]
gi|345539157|gb|AEO08024.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
str. Ua (Uroleucon ambrosiae)]
Length = 439
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 179/379 (47%), Gaps = 64/379 (16%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++S+++ A+ + ++ ++A+TGTNGKSTV T + ++ + G +GGN+G P+
Sbjct: 90 GIEIISDIELFAREV--TVPVIAITGTNGKSTVATMITKIAKYSGFHVLLGGNIGLPV-- 145
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERH-KTMKNY 142
L K + ++E+SS+Q+E N + ++V+LN+ DH+ R+ + + Y
Sbjct: 146 -------LDILHKKTDLYIIELSSFQLE--NTFNLKAKIAVILNIYKDHINRYPEGFEQY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
TK +F H +T + N L + ++ N G K++ + +
Sbjct: 197 KNTKLSIF-HQADT---CIINSNDQLENILYKNKKNFISFGK----------KSSDYYIC 242
Query: 203 AVGVVSQLQLHNMKVM--------GRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEIL 252
+ L N K++ G HNY+N ++A + + AL + +
Sbjct: 243 STSNAYILCYKNQKILNSSELLLSGYHNYNNVLVSIAIADAMKFSRKNTIYALKKFVSL- 301
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVL 311
PHR Q + + G+ W++DSK+TN+ +T L LK + +LLGG +K +L
Sbjct: 302 ---PHRFQTIKNE-NGINWINDSKSTNVNSTEAALNALKIKGTIHLLLGGDSKSNTFDIL 357
Query: 312 IWKTLVNN-GLSIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGC 354
KT + I CF V N+K A+ + +GD ++LSPGC
Sbjct: 358 --KTYFKKTKIKIYCFGKDGIKISKVCKKKSVYVDNLKQAMILIVKNVQSGDTVLLSPGC 415
Query: 355 ASFDEFRNFEHRGMVFQEL 373
+S D+F NFE RG F +L
Sbjct: 416 SSLDQFSNFEERGNFFIKL 434
>gi|150009088|ref|YP_001303831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
distasonis ATCC 8503]
gi|149937512|gb|ABR44209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
distasonis ATCC 8503]
Length = 445
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 186/398 (46%), Gaps = 74/398 (18%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 76 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 134 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAIILNITPDH 183
Query: 133 LERHK-TMKNYALTKCHLFSHMVNT---------------------KLGLLPFGNQHLNE 170
L+R+ M+NY K + + + L PF H N
Sbjct: 184 LDRYNYEMQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHEN- 242
Query: 171 AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230
+KG+ N V I+T T + E + + G HN +N+ +
Sbjct: 243 GMKGYTEN-------NQVVIETANGTFTMEQDLLALT-----------GTHNLYNSLASG 284
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290
++ +DI E + +++ HR++ V R ++GV +++DSKATN+ + L +
Sbjct: 285 IASKIVDIHD--EKIRASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSM 341
Query: 291 KGHKCVILLGGQAKFGYSGV----------LIWKTLVNNGL-SIPCFAVANMKDA----- 334
+IL G YS + LI+ + N L + VAN++DA
Sbjct: 342 TTPVVLILGGTDKGNDYSEIEELVSKKVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEE 401
Query: 335 -VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
V A +MA GD ++LSP CASFD F+++E RG F+
Sbjct: 402 AVAKAYKMAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 439
>gi|153809197|ref|ZP_01961865.1| hypothetical protein BACCAC_03508 [Bacteroides caccae ATCC 43185]
gi|423220326|ref|ZP_17206821.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides caccae
CL03T12C61]
gi|149128173|gb|EDM19393.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
caccae ATCC 43185]
gi|392623403|gb|EIY17506.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides caccae
CL03T12C61]
Length = 444
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 184/375 (49%), Gaps = 40/375 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEDHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE-AKTA 197
M+NY K + + + + + + H A + F VK D A
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRHELAKHGLK-AHLYPFAAVKEDGAIAYVE 248
Query: 198 SFEVPAVGVVS-QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
EV ++ ++ + + G+HN +N+ A +S L G+ E + + R
Sbjct: 249 DHEVKITEPIAFNMEQEELALTGQHNLYNSLAAGISA-NL-AGIAKENIRKALSDFRGVE 306
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV----- 310
HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+ +
Sbjct: 307 HRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTEIEDLVR 364
Query: 311 -----LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLSPGCASF 357
L++ L N L +P V MKDAV A ++A G+ ++LSP CASF
Sbjct: 365 EKCSALVYLGLHNEKLHDFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLSPCCASF 424
Query: 358 DEFRNFEHRGMVFQE 372
D F ++E RG F++
Sbjct: 425 DLFNSYEDRGDQFKK 439
>gi|392957433|ref|ZP_10322956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
macauensis ZFHKF-1]
gi|391876396|gb|EIT84993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
macauensis ZFHKF-1]
Length = 450
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 180/373 (48%), Gaps = 59/373 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A +V + +A+TG+NGK+T T +G+M+ G V GN+G LSE A
Sbjct: 99 VITEVEIAGEV--AEAETIAITGSNGKTTTTTLIGEMMKDSGRTPIVAGNIGTVLSEVA- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ K + + E+SS+Q+ + ++ P ++V+LN+ HL+ H T+ YA K
Sbjct: 156 ------DASTKDDLLIAELSSFQL-MGTIHYAPKIAVLLNIFEAHLDYHGTLDEYAKAKG 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F++ +T + ++ + +KG + GVK+ + + + P G +
Sbjct: 209 RIFANQKSTDFAVYNADDEKVVSLVKGTQ----------GVKVPF---STTQDCPTGGCI 255
Query: 208 SQ--LQLHNMKVM--------GRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTP 255
L KV+ G+HN N AAV A ++LG G E + + +
Sbjct: 256 KDGVLYFKGEKVISEREIVLPGKHNKENILAAVCA-ALLG---GAKKEQIVAVLTSFTGV 311
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI--- 312
HR+Q V I G + +DSKATN+ AT + + + ++L GG + LI
Sbjct: 312 KHRLQFVEM-IAGRKFYNDSKATNILATQAAISAFE-QEIILLAGGLDRGNEFDELIPQL 369
Query: 313 --WKTLVNNGLSIPCFAVA-------------NMKDAVNHARRMATNGDAIVLSPGCASF 357
KTL+ G S P A A ++ +AV A + GD I+LSP CAS+
Sbjct: 370 KSVKTLILFGESAPKLARAAKDAGVPTIMMAHDVAEAVPLAYEASNEGDIILLSPACASW 429
Query: 358 DEFRNFEHRGMVF 370
D+++ FE RG +F
Sbjct: 430 DQYKTFEQRGDIF 442
>gi|32490957|ref|NP_871211.1| hypothetical protein WGLp208 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|30316007|sp|Q8D2Z4.1|MURD_WIGBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|25166163|dbj|BAC24354.1| murD [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 438
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 189/366 (51%), Gaps = 40/366 (10%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ +++ A+ R I +A+TG+NGKSTV + +G + + G+ +GGNLG P +
Sbjct: 91 EIIGDIELFAREASRPI--IAITGSNGKSTVTSMIGAIALNSGLSVGIGGNLGTPALDLL 148
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV-SVVLNLTPDHLERHKT-MKNYAL 144
++ +Q+ ++E+SS+Q+E + T+ S +LN+T DH++R+ + Y L
Sbjct: 149 --------NEKSYQLYIIELSSFQLE--TTFNLKTIASSILNVTHDHMDRYPLGINQYRL 198
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K ++ N K+ ++ + ++ + ++ + G + K ++ V V
Sbjct: 199 IKLKIYK---NAKVKIINL-DDYMTWPVHKNKSVCIGFSSHKGKYCIKKHKKNNWMV--V 252
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
L+ MK+ G HNY NA V+ + L I ++ +LN T++ PHR QI+H+
Sbjct: 253 NNKFLLKCSEMKISGFHNYLNALVSLIFSDILKIPREI-SLN-TLKNFSGLPHRFQIIHK 310
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSI 323
++W++DSK+TN+ +T L +K + +LLGG +K + + + K + N + +
Sbjct: 311 K-NNISWINDSKSTNVSSTIAALSSIKIKGNIHLLLGGDSKKA-NLLPLMKIIRNKKIKL 368
Query: 324 PCFAV-----------ANMKDAVNHA----RRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
CF + + D + H+ + +GD ++LSP C+S D+F+NF+ RG
Sbjct: 369 YCFGKDAYLLSKISTDSFINDTLYHSMIKIKENLNHGDIVLLSPACSSLDQFKNFKERGE 428
Query: 369 VFQELA 374
F +LA
Sbjct: 429 KFTKLA 434
>gi|395796142|ref|ZP_10475441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. Ag1]
gi|395339780|gb|EJF71622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. Ag1]
Length = 448
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 170/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLNDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGLPCWTFGLNKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ S + HR Q V R++ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLSALRSFAGLEHRCQWV-RELDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D++G K V++ GG K G LI
Sbjct: 329 NVGAALAAIEGLGADIQG-KVVLIAGGDGKGADFKDLKGPVAANCRAVVLMGRDSGLIAD 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L G ++P ++ DA+ ++ +A GD ++LSP CASFD F+N+E RG +F
Sbjct: 388 AL---GDAVPQVRAQSLDDAIAQSKALALPGDVVLLSPACASFDMFKNYEERGQLF 440
>gi|425901420|ref|ZP_18878011.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|397883129|gb|EJK99615.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
Length = 448
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 167/358 (46%), Gaps = 60/358 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y HL H + + F
Sbjct: 162 ELSSFQLETTDQ-LGAEVATVLNISEDHMDRYSGLPAY-----HLAKHRIFRGARQVVFN 215
Query: 165 NQH------LNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
Q + E + F L+ AF G++ + K +FE + + + +K
Sbjct: 216 RQDALTRPLIGEGLPCWTFGLSKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELK 269
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSK
Sbjct: 270 IRGAHNQSNALAALAL--GHAVGLPFDAMLSALRTFAGLEHRCQWV-RDLDGVGYYNDSK 326
Query: 277 ATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLI 312
ATN+ A + D++G K V++ GG K G I
Sbjct: 327 ATNVGAALAAIEGLGADIEG-KIVLIAGGDGKGAEFKDLRDPVAANCRAVILMGRDSDKI 385
Query: 313 WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ + G ++ V ++ DAV R A +GD ++LSP CASFD F+N+E RG F
Sbjct: 386 GEAI---GDAVQLIRVGSLVDAVAQCRAAAQSGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|270295451|ref|ZP_06201652.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
D20]
gi|270274698|gb|EFA20559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
D20]
Length = 444
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 186/377 (49%), Gaps = 46/377 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGTPIISEIEFAGRYT--NAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVATEQHDYYVIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+ Y K + + + + + + + H A + F VK D E
Sbjct: 190 MQKYVDAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGLR-AHLYPFAAVKEDGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G+ E + + +
Sbjct: 249 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISA-NL-AGIRKEYIRKALSDFK 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV-- 310
HR++ V ++GV++++DSKATN+ + L + G K V++LGG+ K Y+ +
Sbjct: 304 GVEHRLEKVAT-VRGVSFINDSKATNVNSCWYALQSMTG-KTVLILGGKDKGNDYTEIED 361
Query: 311 --------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIVLSPGC 354
L++ L N + L +P V M+DAV A ++A G+ ++LSP C
Sbjct: 362 LVREKCSALVYLGLHNEKLHAFFDRLGLPVADVQTGMQDAVEAAFKLAKKGETVLLSPCC 421
Query: 355 ASFDEFRNFEHRGMVFQ 371
ASFD F+++E RG F+
Sbjct: 422 ASFDLFKSYEDRGDQFK 438
>gi|423334585|ref|ZP_17312364.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
distasonis CL03T12C09]
gi|409225776|gb|EKN18694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
distasonis CL03T12C09]
Length = 441
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 186/398 (46%), Gaps = 74/398 (18%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++
Sbjct: 72 KAPIIQLLKKQGTPIISEIEFAGRYTDS--KMICITGSNGKTTTTMLTYHILKEAGVDVG 129
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 130 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAIILNITPDH 179
Query: 133 LERHK-TMKNYALTKCHLFSHMVNT---------------------KLGLLPFGNQHLNE 170
L+R+ M+NY K + + + L PF H N
Sbjct: 180 LDRYNYEMQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHEN- 238
Query: 171 AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230
+KG+ N V I+T T + E + + G HN +N+ +
Sbjct: 239 GMKGYTEN-------NQVVIETANGTFTMEQDLLALT-----------GTHNLYNSLASG 280
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290
++ +DI E + +++ HR++ V R ++GV +++DSKATN+ + L +
Sbjct: 281 IASKIVDIHD--EKIRASLSDFTGVEHRLEKVLR-VRGVDYINDSKATNVNSCWYALQSM 337
Query: 291 KGHKCVILLGGQAKFGYSGV----------LIWKTLVNNGL-SIPCFAVANMKDA----- 334
+IL G YS + LI+ + N L + VAN++DA
Sbjct: 338 TTPVVLILGGTDKGNDYSEIEELVSKKVHSLIFMGVDNTKLHAFFDGKVANIEDARSMEE 397
Query: 335 -VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
V A +MA GD ++LSP CASFD F+++E RG F+
Sbjct: 398 AVAKAYKMAHKGDTVLLSPCCASFDLFKSYEDRGDQFK 435
>gi|422615761|ref|ZP_16684468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. japonica str. M301072]
gi|330895229|gb|EGH27567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. japonica str. M301072]
Length = 448
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 173/364 (47%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MSV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVAKHCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVPLVRVDTVQAAVEHSAKLALRGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|424069276|ref|ZP_17806723.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|407994999|gb|EKG35548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
Length = 448
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 172/364 (47%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MSV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ G+ +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGIHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVARHCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVPLLRVDTVQAAVEHSAKLAQRGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|29348859|ref|NP_812362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
thetaiotaomicron VPI-5482]
gi|29340765|gb|AAO78556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
thetaiotaomicron VPI-5482]
Length = 413
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 186/381 (48%), Gaps = 52/381 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+SE++FA + K++ +TG+NGK+T + + + + + GN+G
Sbjct: 51 LKAQGTPVISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGNIGK 108
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 109 SL--------ALQVAEEHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 158
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 159 MQNYIDAKFRITQNQTTDDAFIFWNDDPIIKQELAKHGLKAHLYPFAAVKEDGAIAYVE- 217
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 218 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISA-NL-AGITKENIRKALS 269
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSG 309
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 270 DFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTE 327
Query: 310 V----------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLS 351
+ L++ L N L +P V MKDAV A ++A G+ ++LS
Sbjct: 328 IEDLVREKCSALVYLGLHNEKLHAFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLS 387
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CASFD F+++E RG F++
Sbjct: 388 PCCASFDLFKSYEDRGDQFKK 408
>gi|344996592|ref|YP_004798935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Caldicellulosiruptor lactoaceticus 6A]
gi|343964811|gb|AEM73958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Caldicellulosiruptor lactoaceticus 6A]
Length = 458
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 182/374 (48%), Gaps = 40/374 (10%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 91 KKGIEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPF 149
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + K + V+E+SS+Q+E KYF P V +LN+TPDHL RH TM+NY
Sbjct: 150 -------IDTIETSSKNTIFVLEISSFQLETI-KYFKPKVGCILNITPDHLNRHMTMENY 201
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPG-----VKIDTEAKTA 197
K +F ++ +L + N + I + N+ V ++ +
Sbjct: 202 IKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKGNVIVFSKNKSQFENMVFVEKDTIYF 261
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE V+ + ++ + G HN N A+AA+S L G++ + + ++ R H
Sbjct: 262 TFEGKTQEVMKKDEIF---IPGEHNLEN-ALAAISCT-LPFGIEKDTIEQVLKTFRGVEH 316
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLIWK 314
R++ V +I G+ + +DSK TN +A L + +++ GG K F L+ K
Sbjct: 317 RIEFVA-EINGIKFYNDSKGTNTDAAEKALRAFES-PIILIAGGYDKGESFEKFASLVAK 374
Query: 315 TLVN---------------NGLSIPCFA-VANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+ + F V+ +K+AV + A NGD ++LSP CAS+D
Sbjct: 375 KVKKVFLLGQTKHKIASELEKIGYKNFELVSTLKEAVRKSFECAQNGDIVLLSPACASWD 434
Query: 359 EFRNFEHRGMVFQE 372
F N+E RG +F+E
Sbjct: 435 MFENYEQRGRMFKE 448
>gi|259907415|ref|YP_002647771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
pyrifoliae Ep1/96]
gi|387870165|ref|YP_005801535.1| protein murD [Erwinia pyrifoliae DSM 12163]
gi|224963037|emb|CAX54520.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia pyrifoliae
Ep1/96]
gi|283477248|emb|CAY73160.1| murD [Erwinia pyrifoliae DSM 12163]
Length = 438
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 165/354 (46%), Gaps = 44/354 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + GGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGTGGNIGLP----ALTLLQQPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +
Sbjct: 158 ELSSFQLETASSLHA-AAATILNVTEDHMDRYPLGMQQYRAAKLRIYENATVCVVN---- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ + ++G GA G + + + V V++ ++H ++G+HN
Sbjct: 213 ADDAMTMPVRGADARCVSFGADVGDYHLTRQQGSTWLRVQGEKVLNTDEMH---LVGQHN 269
Query: 223 YHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y NA A +GL ++AL + PHR Q VH GV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRATSLKALTT----FNGLPHRFQRVHEH-NGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA------------ 327
+T L L + +LLGG K L + L + + I CF
Sbjct: 325 GSTEAALNGLHPAGMLWLLLGGDGKSADFSPLT-RYLQGDRIRIYCFGRDGAELAALRPE 383
Query: 328 ----VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA 377
M +AV GD ++LSP CAS D+F+NFE RG +F +LA A
Sbjct: 384 VAVQTETMAEAVQQIATQVQPGDLVLLSPACASLDQFKNFEQRGDLFAQLAREA 437
>gi|317472438|ref|ZP_07931762.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
3_2_56FAA]
gi|316900082|gb|EFV22072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
3_2_56FAA]
Length = 454
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 188/374 (50%), Gaps = 38/374 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+ SG+ V SE++ A QV +I A+TGTNGK+T VG+++ + +V GN+G
Sbjct: 89 FMDSGRPVWSEIELAYQV--SRGQIAAITGTNGKTTTTALVGEIMKCFYSDVYVVGNIGT 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P + +AL + + V E+SS+Q+E FCP VS VLN+TPDHL+RH T++
Sbjct: 147 P-----YTSVALDTKDE--SIIVAEISSFQLETIQD-FCPKVSAVLNITPDHLDRHGTVE 198
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
YA TK + + ++ +L + + + + + ++ K SF
Sbjct: 199 VYAKTKESIGKNQTGDQVMVLNYEDPVTRNMAERANARVVFFSLDHELEEGVYFKDGSFM 258
Query: 201 VPAVGVVSQLQLH-NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ V + ++ ++G HNY N +AA++V +GV E + + + HR+
Sbjct: 259 LAENKTVQTICTEADINLLGGHNYEN-ILAAIAVSHY-MGVPAEQIRKGVSGFKGVEHRI 316
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG----QAKF---------- 305
+ V I+ V + +DSK TN +A G+ + ++ L+GG +A++
Sbjct: 317 EYVDT-IKDVAYYNDSKGTNTDAAIKGIKAM--NRPTFLIGGGYDKKAEYDDWIEAFDGK 373
Query: 306 -------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
G + I KT +G S + V +++AV +A + A +GDA++LSP CAS+
Sbjct: 374 VKELILLGATAEKIGKTAEAHGFSRIVY-VDTLEEAVEYASKHAVSGDAVLLSPACASWG 432
Query: 359 EFRNFEHRGMVFQE 372
F N+E RG F+E
Sbjct: 433 MFPNYEVRGDRFKE 446
>gi|28897232|ref|NP_796837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
parahaemolyticus RIMD 2210633]
gi|153839040|ref|ZP_01991707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
parahaemolyticus AQ3810]
gi|260366058|ref|ZP_05778524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus K5030]
gi|260878313|ref|ZP_05890668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus AN-5034]
gi|260896402|ref|ZP_05904898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus Peru-466]
gi|433656751|ref|YP_007274130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
parahaemolyticus BB22OP]
gi|33301382|sp|Q87SG6.1|MURD_VIBPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|28805441|dbj|BAC58721.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio
parahaemolyticus RIMD 2210633]
gi|149747468|gb|EDM58416.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
parahaemolyticus AQ3810]
gi|308087563|gb|EFO37258.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus Peru-466]
gi|308093171|gb|EFO42866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus AN-5034]
gi|308111373|gb|EFO48913.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus K5030]
gi|432507439|gb|AGB08956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
parahaemolyticus BB22OP]
Length = 437
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 174/383 (45%), Gaps = 60/383 (15%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQTVLAKGTPVVGDIELFAWAVNKPV--VAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALELLEQDADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F H +L ++ +Q ++ P V ++ +
Sbjct: 193 GMADYRAAKLRIFDH---AELAVVNRDDQETYPEVE-----------MPVVTFGSDEQAY 238
Query: 198 SFEVPAVGVVSQLQLH--------NMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNS 247
EV G + L H +K++G+HN NA V A L G+D + AL +
Sbjct: 239 GLEVD--GSRTWLLDHGQRVIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNALKN 296
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKFG 306
+ HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K G
Sbjct: 297 YTGL----THRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK-G 350
Query: 307 YSGVLIWKTLVNNGLSIPCFAVA---------------NMKDAVNHARRMATNGDAIVLS 351
+ L + CF + M+D + +GD ++LS
Sbjct: 351 ADFTPLKPIFATLNLQLCCFGLDGDDFMPLHESAIRFNTMEDVIQQISSQLKSGDMVMLS 410
Query: 352 PGCASFDEFRNFEHRGMVFQELA 374
P CASFD+F NF RG F LA
Sbjct: 411 PACASFDQFDNFMARGDAFAVLA 433
>gi|429754109|ref|ZP_19286854.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 326 str. F0382]
gi|429170328|gb|EKY12016.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 326 str. F0382]
Length = 447
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 186/383 (48%), Gaps = 59/383 (15%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G R++SE++FA++ S+ I+ +TG+NGK+T + G++ +GGN+G
Sbjct: 84 EKGIRIISEIEFASEYT-HSL-IVGITGSNGKTTTTLLTHHIFKEAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++++LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAILLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI----------GAF---PGV 188
Y +K + + + + + E ++ H I GAF +
Sbjct: 193 YIASKFRIAMNQTENDYLIYDADDPVIEEWLQHHTLKAKLIPFSIEKELPYGAFLKDNKI 252
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
I E +TA +++ + + + G+HN N A SV + + +L +
Sbjct: 253 HIMLENQTAE--------TTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRDS 302
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---- 304
++ + HR++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K
Sbjct: 303 LKGFKGADHRLEEV-KVVDGVTYVNDSKATNVNSVYFALDTIKT-PIVWIVGGQDKGNDY 360
Query: 305 ----------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
G I ++ N+G + +M +AV A++ A GD +
Sbjct: 361 NALLPYVHEKVKAIVCLGVDNEPILRSFSNSGKEM--IETQSMDEAVRIAKKFAAEGDTV 418
Query: 349 VLSPGCASFDEFRNFEHRGMVFQ 371
+LSP CASFD F+++E RG F+
Sbjct: 419 LLSPACASFDLFKSYEDRGDQFK 441
>gi|71277817|ref|YP_271115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
psychrerythraea 34H]
gi|81174947|sp|Q47VQ7.1|MURD_COLP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|71143557|gb|AAZ24030.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
psychrerythraea 34H]
Length = 471
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 171/354 (48%), Gaps = 40/354 (11%)
Query: 43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ-- 100
+K+LAVTG+NGKSTVV+ + + +G+ A + GN+G P+ H + +S+ Q
Sbjct: 120 MKMLAVTGSNGKSTVVSLLASLAKAIGVNAALAGNIGEPILN-LLHRENVYNSQLANQPD 178
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
+ +VE+SS+Q+E + S VLNL+ DHL+RHKT+ NY K ++ K+ +
Sbjct: 179 IVIVELSSFQLETLSSMHAIAAS-VLNLSDDHLDRHKTLANYQAIKQSIYPQ---AKIAV 234
Query: 161 LPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
+ +Q N + N F ID + V G + + + +
Sbjct: 235 VSREDQASNTLVAAQEIISFGLNKPEQDCFGLQAIDNKM------VMMFGEQALISIDEL 288
Query: 216 KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
+ G HN N +AAL+ LG G + A+ + HR Q V + + W++DS
Sbjct: 289 PLAGMHNALN-YMAALA-LGYSAGWSLSAMTENLAGFMGLAHRCQRVASE-DYIQWINDS 345
Query: 276 KATNLEAT---CTGLM-DLKGH-KCVILLGGQAKFGYSGVLI---------WKTLVNNGL 321
KATN+ AT TGL+ L G K +++ GG K L TL +G
Sbjct: 346 KATNVGATLAAITGLVPTLTGQNKLILIAGGDGKGADFSALTTILNCDVNQLITLGKDGA 405
Query: 322 SIPCFA-----VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
I V +++AV A+++A GD ++LSP CAS D F+N++ RG F
Sbjct: 406 EIASLVSDAIQVDTLREAVEQAKQIAKPGDMVLLSPACASIDMFKNYQVRGEQF 459
>gi|373500790|ref|ZP_09591163.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella micans
F0438]
gi|371951748|gb|EHO69591.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella micans
F0438]
Length = 443
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 190/379 (50%), Gaps = 47/379 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+++ G R++SE++FA + S K++ +TG+NGK+T + + + G + + GN+G
Sbjct: 82 IIKQGTRIISEIEFAGRYT--SSKMICITGSNGKTTTTSLIYHIFRDAGYDVGLAGNIGR 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKT- 138
L AL + + V+E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 140 SL--------ALQVALEPHEYYVIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDNK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NYA +K + + + + + + ++ +FN+ + +P ++
Sbjct: 190 FENYADSKMRIIQNQTPDDSFIYWNDDPVIQKELR--KFNVKAV-CYPFSELKEHGSIGY 246
Query: 199 FEVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEIL 252
E + + Q ++ ++ + G+HN +N+ A ++ +I G+ E + ++
Sbjct: 247 IE-QGMYTIEQPTPFNIEQESLSLTGKHNIYNSLAAGIAS---NISGIRKENIRKSLSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
HR++ V + + GV +++DSKATN++A L ++ ++++GG+ K
Sbjct: 303 PGVEHRLEKVCK-VAGVQYINDSKATNVDACWYALESMRT-PTILIIGGKDKGNDYEPIK 360
Query: 305 ---------FGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
Y G K N + L +P +MK+ V+ +A GD ++LSP C
Sbjct: 361 PLVKEKCTALVYLGADNRKLHENFDSLGLPVRDTHSMKECVDACYELARPGDTVLLSPCC 420
Query: 355 ASFDEFRNFEHRGMVFQEL 373
ASFD F+N E RG F++L
Sbjct: 421 ASFDLFKNMEDRGEQFKQL 439
>gi|28871545|ref|NP_794164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. tomato str. DC3000]
gi|422658107|ref|ZP_16720544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|38257960|sp|Q87WY3.1|MURD_PSESM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|28854796|gb|AAO57859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. tomato str. DC3000]
gi|331016732|gb|EGH96788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. lachrymans str. M302278]
Length = 448
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 173/360 (48%), Gaps = 60/360 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + VS+L
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKFLAFQFENLMPVSEL-- 268
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
KV G HN A A LG +G+ +A+ S++ HR Q + R+ GV +
Sbjct: 269 ---KVRGAHN--QANALAALALGHAVGLPFDAMLSSLREFTGLEHRCQWL-RERNGVDYY 322
Query: 273 DDSKATNLEATCTGLMDLK---GHKCVILLGGQ-------------AKFGYSGVLIWKT- 315
+DSKATN+ A + L G K V++ GG AK+ + VL+ +
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIGGKLVLIAGGDGKGADFSGLRAPVAKYCRAAVLLGRDA 382
Query: 316 -LVNNGL--SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
L+ L ++P V ++ A + +A GDA++LSP CAS D F+N+E RG VF +
Sbjct: 383 ELIAQALGDAVPLIRVDTVQAAAERSAELAQRGDAVLLSPACASLDMFKNYEERGRVFAQ 442
>gi|90413038|ref|ZP_01221036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium profundum 3TCK]
gi|90326053|gb|EAS42492.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium profundum 3TCK]
Length = 447
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 184/401 (45%), Gaps = 58/401 (14%)
Query: 3 MLWLFLLEFQLKATGLACLL-------QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKS 55
M WL + + + G+A +G ++ +++ A+ + + + +A+TG+NGKS
Sbjct: 63 MNWLLEADLIVASPGIALATPELVAAKAAGIEIVGDIELFARAVTKPV--VAITGSNGKS 120
Query: 56 TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPN 115
TV + +G+M I VGGN+G AL + + V+E+SS+Q+E +
Sbjct: 121 TVTSLIGEMAKEASINVGVGGNIG---------FAALDMLANEHDLYVLELSSFQLETTS 171
Query: 116 KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV-----NTKLGLLPFGNQHLNE 170
+V LNL+ DH++R+ +++Y+L K +F H L LP H
Sbjct: 172 SLELKA-AVYLNLSEDHMDRYDGIEDYSLAKMRIFEHAELAVYNRDDLATLPTSFSH--- 227
Query: 171 AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230
I F+ G V +D E E AV ++ +++ ++GRHN N+ A
Sbjct: 228 KITSFGFDNQDYGL---VTLDGE------EFLAVDKQPIMKTNDIALVGRHNVANSLAAL 278
Query: 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--M 288
++I D +A ++ HR Q+V V WV+DSKATNL +T L +
Sbjct: 279 ALADAVNI--DHQAACRALQRYNGLAHRCQLVVNQ-HDVKWVNDSKATNLASTLAALKGL 335
Query: 289 DLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA---------------VANMKD 333
+L G K +L+GG K G + L + + + CF M +
Sbjct: 336 NLPG-KLHLLVGGDGK-GADFSELKPVLADLNVQLYCFGRDGNQFMSLVDAPICTEAMAE 393
Query: 334 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
A+ A A GD I+LSP CASFD+F NF RG F E A
Sbjct: 394 AMTIAADTAQKGDMILLSPACASFDQFPNFMARGDAFVEQA 434
>gi|421142252|ref|ZP_15602228.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens BBc6R8]
gi|404506646|gb|EKA20640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens BBc6R8]
Length = 448
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 170/356 (47%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLNDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLIGEGLPCWTFGLNKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ S + HR Q V R++ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLSALRSFAGLEHRCQWV-RELAGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D++G K V++ GG K G LI
Sbjct: 329 NVGAALAAIEGLGADIQG-KVVLIAGGDGKGADFKDLKGPVAANCRAVVLMGRDSGLIAD 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L G ++P ++ DA+ ++ +A GD ++LSP CASFD F+N+E RG +F
Sbjct: 388 AL---GDAVPQVRAQSLDDAIAQSKALAQPGDVVLLSPACASFDMFKNYEERGQLF 440
>gi|372276000|ref|ZP_09512036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pantoea sp.
SL1_M5]
gi|390436828|ref|ZP_10225366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pantoea
agglomerans IG1]
Length = 438
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 168/352 (47%), Gaps = 46/352 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP----ALSLLQSPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + +LN++ DH++R+ M+ Y K ++ N ++ ++
Sbjct: 158 ELSSFQLETTHS-LKAAAATILNVSEDHMDRYPLGMQQYRAAKLRVYE---NAQVCIVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGA-FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G F ++ + + V V L MK++G+HN
Sbjct: 213 ADDALTMPVRGADTRCVSFGVDFGDYHLNKQQGSIWLRVKGEKV---LNTAEMKMVGQHN 269
Query: 223 YHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y NA A +GL + AL HR Q+VH QGV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRASSLAALTH----FNGLAHRFQLVHEH-QGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA----------- 327
+T L L+ + +L+GG K ++ ++ W L + + + CF
Sbjct: 325 GSTEAALNGLQVKGTLWLLMGGDGKSADFTPLIPW--LQGDNVRLYCFGRDGDALAALRP 382
Query: 328 -----VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ GD ++LSP CAS D+FRNFE RG F +LA
Sbjct: 383 EIAVRTETMRQAMEQIAPQVKAGDMVLLSPACASLDQFRNFEQRGEQFAQLA 434
>gi|294793907|ref|ZP_06759044.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
3_1_44]
gi|294455477|gb|EFG23849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
3_1_44]
Length = 456
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 183/373 (49%), Gaps = 46/373 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A +V I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVELAYEV--SKSPIVAVTGTNGKTTTTTLLTKVLEGSGKPVHVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E K+F P +++LN+TPDHL RHKTM+NY
Sbjct: 150 VAY-------SMPADGFLVAELSSYQLETI-KHFRPIGAIILNITPDHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFP--GVKIDTEAKTASF 199
K +F + ++T +L + + H ++ A D + A
Sbjct: 202 AKERIFENQLSTDYLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGQCYIAKD 261
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNSTIEILRTPPH 257
V A V++ +H + G HN N L+V+ L +GV VE ++ I H
Sbjct: 262 GV-AKFVIADEDIH---IPGSHNIEN----ILTVIALSHALGVPVETIHRIISEFHGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG----------- 306
R++ V + I G+T+ +DSKATN+++ L + ++L GG K
Sbjct: 314 RLERV-KTIDGITFYNDSKATNVDSVVKALESFD-QQVILLAGGHDKMTPLEDFMQLVKE 371
Query: 307 YSGVLIWKTLVNNGLSI--------PCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
++ +I+ + + P + +MK+AV ++A GD ++LSP C+SFD
Sbjct: 372 HTKAVIFMGEAADRFEMAAKEAGVKPIYRALSMKEAVEQGYKLAETGDIVLLSPACSSFD 431
Query: 359 EFRNFEHRGMVFQ 371
+ FE RG F+
Sbjct: 432 WYSCFEERGDDFK 444
>gi|381405689|ref|ZP_09930373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pantoea sp.
Sc1]
gi|380738888|gb|EIB99951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pantoea sp.
Sc1]
Length = 438
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 168/356 (47%), Gaps = 54/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV T VG+M G + VGGN+G P A + P+ Q+ V+
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGLP----ALSLLQSPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + VLN++ DH++R+ M+ Y K ++ + +VN
Sbjct: 158 ELSSFQLETTHS-LKAAAATVLNVSEDHMDRYPLGMQQYRAAKLRVYENAQTCIVNA--- 213
Query: 160 LLPFGNQHLNEAIKGHRFNLAWIG-AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ L ++G G F ++ + + V V L MK+
Sbjct: 214 -----DDALTMPVRGADTRCVSFGIDFGDYHLNKQQGSIWLRVKGEKV---LNTAEMKMT 265
Query: 219 GRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
G+HNY NA A +GL + AL HR Q+VH QGV W++DSK
Sbjct: 266 GQHNYTNALAALALADAVGLPRASSLAALTH----FNGLAHRFQLVHEH-QGVRWINDSK 320
Query: 277 ATNLEATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA------- 327
ATN+ +T L L+ + + +L+GG K ++ ++ W L + + + CF
Sbjct: 321 ATNVGSTEAALNGLQVNGTLWLLMGGDGKSADFTPLIPW--LQGDNVRLYCFGRDGDALA 378
Query: 328 ---------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ +GD ++LSP CAS D+FRNFE RG F +LA
Sbjct: 379 ALRPEIAVRTETMRQAMEQIAPQVKSGDMVLLSPACASLDQFRNFEQRGDQFAQLA 434
>gi|336313066|ref|ZP_08568009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
HN-41]
gi|335863186|gb|EGM68344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
HN-41]
Length = 439
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 179/370 (48%), Gaps = 44/370 (11%)
Query: 21 LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
+L G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 86 VLDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIG 145
Query: 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
P AL ++ V+E+SS+Q+E + C VS LN+T DH++R+ M
Sbjct: 146 IP---------ALDLLSKNAEIFVLELSSFQLETTHSLNC-VVSTCLNVTEDHMDRYSDM 195
Query: 140 KNYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 196 DAYRNAKLRLYHQSRAVLFNRDDALTMPTEPMNQ----NSFGLAPPEGDEWGISDSKIYH 251
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
S E+ + + + ++G HN+ N +AA++++ +GVD + +
Sbjct: 252 GSSEI--------MPITEVSLIGSHNHAN-LLAAMALVDA-VGVDRQVMAKVARTFTGLS 301
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFGYSGVLIWK 314
HR ++V GVT+V+DSKATN+ AT L L H +++ GG K G L+
Sbjct: 302 HRCEVVGVK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFGPLVEP 360
Query: 315 --------TLVNNGLSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
TL +G I V +M AV A +AT+GD ++LSP CAS D +
Sbjct: 361 LTKVTHLITLGRDGNKIAALKEGAIKVDSMAAAVAKAAELATSGDIVLLSPACASLDMYS 420
Query: 362 NFEHRGMVFQ 371
NF RG F+
Sbjct: 421 NFMARGDDFR 430
>gi|421100598|ref|ZP_15561221.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. 200901122]
gi|410796401|gb|EKR98537.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. 200901122]
Length = 460
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 175/386 (45%), Gaps = 93/386 (24%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ VTGT+GKST + + +L + GGNLG P + I+L AV
Sbjct: 103 KIIGVTGTDGKSTTTSLITHLLKKDFSDLKEGGNLGIPFTSFCKEPISL---------AV 153
Query: 104 VEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHL-------FSHMVN 155
+E+SSYQ++ + Y VSV LNL PDHLERH+TM+NY K + S +V+
Sbjct: 154 LELSSYQLD--DSYPLHLNVSVFLNLAPDHLERHQTMENYFRAKLKIADLQNPNHSLIVS 211
Query: 156 TKL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
K+ LL FG +EA+ +E +T+ F
Sbjct: 212 EKIREKILNSTSVRCKLLSFGRAATSEAVLDES--------------SSEIRTSKF---- 253
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+ +S+ L G HN N A A L+ IG + E++ + I + PHR QI
Sbjct: 254 IYDISRFYLP-----GTHNRENLAAAILASEA--IGGEPESIQARIPLFMGLPHRFQIAG 306
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK---------FGYSGV--- 310
QG+++++DSK+TNL + G+ K + ++LGG+ K F G+
Sbjct: 307 EK-QGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPKQEDPKPLYDFLTRGIGCV 365
Query: 311 -------LIWKTLVNNGLSIPCFAVANMKDAV------------NHARRMATNGDA---- 347
+W+ + N + F+V N+ +A + + +++ + +
Sbjct: 366 VLIGEARSVWEKGIRNVIGEKLFSVENLNEAFKIFKKWNSISESSESHKISPSSETSISY 425
Query: 348 IVLSPGCASFDEFRNFEHRGMVFQEL 373
V SP CASFD+++NFE RG F L
Sbjct: 426 FVFSPACASFDQYKNFEERGSHFLSL 451
>gi|213966569|ref|ZP_03394720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. tomato T1]
gi|301384716|ref|ZP_07233134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tomato Max13]
gi|302059796|ref|ZP_07251337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tomato K40]
gi|302131743|ref|ZP_07257733.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|213928419|gb|EEB61963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. tomato T1]
Length = 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 173/360 (48%), Gaps = 60/360 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + VS+L
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKFLAFQFENLMPVSEL-- 268
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
KV G HN A A LG +G+ +A+ S++ HR Q + R+ GV +
Sbjct: 269 ---KVRGAHN--QANALAALALGHAVGLPFDAMLSSLREFTGLEHRCQWL-RERNGVGYY 322
Query: 273 DDSKATNLEATCTGLMDLK---GHKCVILLGGQ-------------AKFGYSGVLIWKT- 315
+DSKATN+ A + L G K V++ GG AK+ + VL+ +
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIGGKLVLIAGGDGKGADFSGLRAPVAKYCRAAVLLGRDA 382
Query: 316 -LVNNGL--SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
L+ L ++P V ++ A + +A GDA++LSP CAS D F+N+E RG VF +
Sbjct: 383 ELIAQALGDAVPLIRVDTVQAAAERSAELAQRGDAVLLSPACASLDMFKNYEERGRVFAQ 442
>gi|440722117|ref|ZP_20902500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP34876]
gi|440725826|ref|ZP_20906088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP34881]
gi|440361646|gb|ELP98863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP34876]
gi|440367969|gb|ELQ05015.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP34881]
Length = 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 177/361 (49%), Gaps = 62/361 (17%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQ-------------AKFGYSGVLIWKT 315
+DSKATN+ A + D+ G K V++ GG AK+ + VL+ +
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVAKYCRAAVLLGRD 381
Query: 316 --LVNNGL--SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
L+ L ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG VF
Sbjct: 382 AELIAQALGDAVPLVRVDTVQAAVEHSAKLALRGDAVLLSPACASLDMFKNYEERGRVFA 441
Query: 372 E 372
+
Sbjct: 442 Q 442
>gi|88801288|ref|ZP_01116816.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Polaribacter irgensii 23-P]
gi|88781946|gb|EAR13123.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Polaribacter irgensii 23-P]
Length = 460
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/398 (27%), Positives = 189/398 (47%), Gaps = 72/398 (18%)
Query: 9 LEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL 68
L +LKA G++ V+SE++FAA+ S I+ +TG+NGK+T V ++L
Sbjct: 94 LVLKLKANGIS--------VISEIEFAAKYT--SATIVGITGSNGKTTTTMLVHRILKDA 143
Query: 69 GIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNL 128
G+ + GN+G ++ ++ + VVE+SS+Q++ K F ++++ N+
Sbjct: 144 GLNVGLAGNIGVSFAQQV--------AEVSHENYVVELSSFQLDGIEK-FSSHIAILTNI 194
Query: 129 TPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF---------- 177
TPDHL+R++ + Y +K + + + + + +N +K H+
Sbjct: 195 TPDHLDRYEYDFEKYVASKFRITQNQKESDYLIYDADDIAINTWLKQHKIKAKLVPFSLK 254
Query: 178 -NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236
LA+ G I + ++P + + V G+HN N A ++ L
Sbjct: 255 KELAYGAFLKGNNIIININKETIKMP---------ISTITVKGKHNVKNTMAATMAAQLL 305
Query: 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHK 294
I EA+ ++ HR++ V + ++GV +++DSKATN+ AT L MD +
Sbjct: 306 QI--RKEAIKESLANFEGVEHRLENVAK-VKGVEYINDSKATNVNATFYALECMD---RQ 359
Query: 295 CVILLGGQAKFG-YSGVLIWKTLVNNGL-SIPCFAVANMK-------------------D 333
V ++GG K Y+ +L LV + +I C V N K +
Sbjct: 360 TVWIVGGVDKGNDYNDLL---PLVREKVKAIVCLGVDNQKIKDMFGNVVDIVVETAGAEE 416
Query: 334 AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
AV A ++A +GDA++LSP CASFD F N+E RG F+
Sbjct: 417 AVKVAHKLAEDGDAVLLSPACASFDLFENYEDRGRQFK 454
>gi|444380297|ref|ZP_21179436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterovibrio sp.
AK16]
gi|443675566|gb|ELT82289.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterovibrio sp.
AK16]
Length = 450
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/363 (31%), Positives = 173/363 (47%), Gaps = 46/363 (12%)
Query: 37 QVIPRSIK--ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPS 94
++ R +K ++ +TG+NGKSTV + VG+M GI VGGN+G AA +A
Sbjct: 99 ELFARDVKAPVIGITGSNGKSTVTSLVGEMAKAAGINVGVGGNIGF----AALDMLA--- 151
Query: 95 SKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154
+ ++ V+E+SS+Q+E + +V LNL+ DH++R++ M +Y K +F
Sbjct: 152 --NEHELYVLELSSFQLETTSSLNLE-AAVFLNLSEDHMDRYEGMDDYRDAKLRIFDQ-- 206
Query: 155 NTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH 213
TKL + + Q N KG G G TE A + V + +
Sbjct: 207 -TKLSVWNQDDLQTKNTQTKGDNVPAISFGFTSGEYTLTEKDGAEWLTAKGEPV--MAVS 263
Query: 214 NMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
++ ++GRHN N AA+A +GV EA + R PHR Q V GV W
Sbjct: 264 DIALVGRHNVANCLAAMAQADA----VGVSREAQCQAMREYRGLPHRCQQVIEH-NGVLW 318
Query: 272 VDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA--- 327
V+DSKATN +T L L+ + +L+GG K G + L +++ C+
Sbjct: 319 VNDSKATNPASTEAALDGLQLAGRLHLLVGGDGK-GADFSSLKPILGKLNVTLYCYGRDG 377
Query: 328 ------------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF----Q 371
+ M++A++ A A GD ++LSP CASFD+F NF RG F Q
Sbjct: 378 HAFTNLVESPVVIETMQEAMDIAASTAKPGDMVLLSPACASFDQFTNFMVRGDTFAAYAQ 437
Query: 372 ELA 374
E+A
Sbjct: 438 EIA 440
>gi|393778951|ref|ZP_10367208.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 412 str. F0487]
gi|392611133|gb|EIW93883.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
sp. oral taxon 412 str. F0487]
Length = 444
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 183/376 (48%), Gaps = 48/376 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+SE++FA+Q I + +TG+NGK+T + G++ +GGN+G
Sbjct: 84 EKGIAVISEIEFASQYTDSLI--VGITGSNGKTTTTLLTHHIFKEAGLQVGLGGNIGYSF 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141
+E + + P + V +E+SS+Q++ ++F P ++V+LN+TPDHL+R+ +N
Sbjct: 142 AEL------VATENPPYYV--LEISSFQLD-GIEHFAPHIAVLLNITPDHLDRYDYKFEN 192
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF-- 199
Y +K + + + ++ + + + H I I+ E +F
Sbjct: 193 YINSKFRIAMNQTENDYLIYDADDEVITQWLSTHTIKSKLIP----FSIEKELPQGAFLK 248
Query: 200 ----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ +++ + + + G+HN N A SV + + +L +++ +
Sbjct: 249 DNKIYIMLENQTTEIDVEEISLRGKHNIKNTMAA--SVAARLVNIRNNSLRESLKGFKGA 306
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGVLIWK 314
PHR++ V + + GVT+V+DSKATN+ + L +K V ++GGQ K Y+ +L +
Sbjct: 307 PHRLEEV-KVVDGVTYVNDSKATNVNSVFYALDTIK-TPIVWIVGGQDKGNDYNSLLPY- 363
Query: 315 TLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCA 355
+ +I C V N M +AV A+ A GD ++LSP CA
Sbjct: 364 -VHEKVRAIVCLGVDNTPIIQSFYNTIGTLVETRSMDEAVKLAQGFAQEGDTVLLSPACA 422
Query: 356 SFDEFRNFEHRGMVFQ 371
SFD F+N+E RG +F+
Sbjct: 423 SFDLFKNYEERGDLFK 438
>gi|385785812|ref|YP_005816921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia sp.
Ejp617]
gi|310765084|gb|ADP10034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia sp.
Ejp617]
Length = 438
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 165/354 (46%), Gaps = 44/354 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + GGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGTGGNIGLP----ALTLLQQPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +
Sbjct: 158 ELSSFQLETTSSLHA-AAATILNVTEDHMDRYPLGMQQYRAAKLRIYENATVCVVN---- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ + ++G GA G + + + V V++ ++H ++G+HN
Sbjct: 213 ADDAMTMPVRGADARCVSFGADVGDYHLTRQQGSTWLRVQGEKVLNTDEMH---LVGQHN 269
Query: 223 YHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y NA A +GL ++AL + PHR Q VH GV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRATSLKALTT----FNGLPHRFQRVHEH-NGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA------------ 327
+T L L + +LLGG K L + L + + I CF
Sbjct: 325 GSTEAALNGLHPAGILWLLLGGDGKSADFSPLT-RYLQGDRIRIYCFGRDGAELAALRPE 383
Query: 328 ----VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA 377
M +AV GD ++LSP CAS D+F+NFE RG +F +LA A
Sbjct: 384 VAVQTETMAEAVQQIAARVQPGDLVLLSPACASLDQFKNFEQRGDLFAQLAREA 437
>gi|62900456|sp|Q5FUJ7.2|MURD_GLUOX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
Length = 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 168/373 (45%), Gaps = 59/373 (15%)
Query: 25 GKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
G +++S+ + + + +S +AVTGTNGKST + + G GGNLG
Sbjct: 91 GIQILSDAEILYRAVRKSGSKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGT- 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ALP P V V+E+SSY +E +++ + +LNLTPDHL+RH M
Sbjct: 150 ------ASLALPL-LPDDGVYVIEMSSYMLERLDRFHA-NAACLLNLTPDHLDRHGDMAG 201
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA K H+F +M L ++ + W A I ++ + +V
Sbjct: 202 YAAAKAHVFDNMGPDDLAVIGMDDD--------------WCRA-----IASQVASRGVQV 242
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + GRHN N V A + +G+D A+ + ++ HR+Q
Sbjct: 243 VELDADALPPYDGPALPGRHNAQN--VGAALTIASHLGLDEAAIRTGLKSFPGLEHRLQK 300
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V + GV++++DSKATN EA L K + + GG AK
Sbjct: 301 V-AECDGVSFINDSKATNAEAVSKALAAYD--KVMWIAGGVAKAGGIESLAPFFRHIAQA 357
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA--TNGDAIVLSPGCASFDEF 360
G ++ TL +G +P ++ AV A + A N ++LSP CASFD+F
Sbjct: 358 FLIGQDADVLAATLETHG--VPFQQCGTLEKAVPAAFKAALDENIPVVLLSPACASFDQF 415
Query: 361 RNFEHRGMVFQEL 373
R+FE RG F ++
Sbjct: 416 RSFEDRGSHFLQI 428
>gi|302185271|ref|ZP_07261944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. syringae 642]
Length = 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 172/364 (47%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MSV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLRQFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVAKHCRAAVVLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVPLVRVDTVQAAVEHSAKLAQRGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|433545444|ref|ZP_20501798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus agri
BAB-2500]
gi|432183267|gb|ELK40814.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus agri
BAB-2500]
Length = 454
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 185/377 (49%), Gaps = 60/377 (15%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A+Q+ I+ +TG+NGK+T T VGQ+L G++ VGGN+G L
Sbjct: 96 VVTEVELASQI--AKAPIIGITGSNGKTTTTTLVGQILKEAGLDVLVGGNIGTVL----- 148
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
C + P Q V E+SS+Q+ + + F P + V+LNL P HL+ H TM+ Y K
Sbjct: 149 -CGLAEEAGPD-QWLVAELSSFQL-MGTREFRPHIGVLLNLYPAHLDYHHTMEAYLDAKL 205
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F++ + +LPF + LA G P ++ +KT +VP V
Sbjct: 206 KMFANQTADDIAILPFDQPEI----------LAKCGELPA-RVYYFSKTQ--QVPRGAFV 252
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLD---IGVDVEAL-----NSTIEILRTPP--- 256
+ G+ + AVA ++V LD + V L ++ +++L T P
Sbjct: 253 QDGVIRFTDGQGQSD-DIIAVADMTVPHLDNALAAILVAKLAGANTSAIVQVLSTFPGVE 311
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEAT--------------CTGL---MDLKGHKCVILL 299
HRM+ V I GV + +DSKATN EA C GL +D + + + ++
Sbjct: 312 HRMEYVD-SIAGVKYYNDSKATNPEAASRALQACQEPVVWICGGLDRGVDFR--ELLPVM 368
Query: 300 GGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
G+ K G + ++ G++ V ++ AV A R+A +GD ++LSP CA
Sbjct: 369 KGRVKAVVALGQTAPILLARAEEAGIN-ERIHVDTVEKAVLAASRLAQSGDVVLLSPACA 427
Query: 356 SFDEFRNFEHRGMVFQE 372
S+D F +FE RG +F++
Sbjct: 428 SWDMFPSFEVRGSMFKD 444
>gi|398915512|ref|ZP_10657361.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM49]
gi|398176281|gb|EJM64006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM49]
Length = 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 167/356 (46%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLRDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGKGAEFKDLRDPVAANCRAVILMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P ++ +AV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRAGSLVEAVEQCRAAAQPGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|66047331|ref|YP_237172.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. syringae B728a]
gi|75500772|sp|Q4ZNY8.1|MURD_PSEU2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|63258038|gb|AAY39134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
syringae pv. syringae B728a]
Length = 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 168/358 (46%), Gaps = 56/358 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F + G
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVN----G 216
Query: 165 NQHLNEAIKGHRFNLAWIGAFP------GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
L+ + G G G++ + K +F+ + + + +KV
Sbjct: 217 QDALSRPLIGEGLPCWTFGLNKPDFHGFGLREENGEKYLAFQFENL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ +++ HR Q + R+ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G LI +
Sbjct: 329 NVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVARHCRAAVLLGRDAELIAQ 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG VF +
Sbjct: 388 AL---GDAVPLLRVDTVQAAVEHSAKLAQCGDAVLLSPACASLDMFKNYEERGRVFAQ 442
>gi|343503811|ref|ZP_08741617.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
ichthyoenteri ATCC 700023]
gi|342813897|gb|EGU48854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
ichthyoenteri ATCC 700023]
Length = 438
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 189/402 (47%), Gaps = 64/402 (15%)
Query: 5 WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + G+A ++ +G V+ +++ A + + ++A+TG+NGKSTV
Sbjct: 65 WLLEADLVVTNPGIALATPEIQQIIAAGIPVVGDIELFAWHVDK--PVIAITGSNGKSTV 122
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
G + G VGGN+G P A P+ + V+E+SS+Q+E +
Sbjct: 123 TDMTGVVAKAAGWNVGVGGNIGVP----ALDLFEQPAD-----LYVLELSSFQLETTSS- 172
Query: 118 FCPTVSVV-LNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHLNEA 171
P V+ LNL+ DH++R++ M +Y K +F H +VN P +++L E
Sbjct: 173 -LPLVAAAFLNLSEDHMDRYQGMADYRQAKLRIFDHAKVCVVNADDKQTYPDTDKNLVE- 230
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVA 229
F+L + ++ D E A + L + + ++GRHN N+ +A
Sbjct: 231 -----FSLEQPSSASVIEQD------GVEFLAYNGEAILAVDELSLVGRHNVANSLVVIA 279
Query: 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGL-- 287
L+ G+D+ +EA+ S + HR Q+V D +G+ WV+DSKATN+ +T L
Sbjct: 280 LLNAAGVDVSAGLEAMKSYNGLT----HRCQVV-ADNRGIKWVNDSKATNVASTLAALSG 334
Query: 288 MDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA---------------NMK 332
++L G K +L+GG K G + L + + CF M+
Sbjct: 335 LNLSG-KLFLLVGGNGK-GADFSDLAPVLAPLNVQLCCFGADGDQFMPLHASAQRFYTMQ 392
Query: 333 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
D V A +GD ++LSP CASFD+F NF RG F LA
Sbjct: 393 DIVEWAAPQLQSGDMVMLSPACASFDQFSNFMARGDAFAHLA 434
>gi|419781108|ref|ZP_14306940.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK100]
gi|383184500|gb|EIC77014.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK100]
Length = 450
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 176/366 (48%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F +K A A ++
Sbjct: 203 YVAAKWNIQNKMTADDFLVLNF-NQDLAKELATK--TQATVVPFSTLKKVDGAYLADGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAASEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V +IQGV + +DSK+TN+ AT L K +++ GG + L+ K +
Sbjct: 317 VD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLSIPCFAVA------------NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S +A ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKLAADKAGVAYVDATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|118444015|ref|YP_877138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
novyi NT]
gi|158512394|sp|A0PXN6.1|MURD_CLONN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|118134471|gb|ABK61515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium novyi
NT]
Length = 458
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 177/377 (46%), Gaps = 47/377 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+SG + SE++ + P KI +TG++GK+T T V +L G + +VGGN+GNPL
Sbjct: 99 ESGAYITSEMEEFIKYCPA--KIFGITGSDGKTTTTTLVYNILMTEGYKTWVGGNIGNPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
F I + K V+E+SS+Q M + + C ++V NL+P+HL+ HK M
Sbjct: 157 ----FSNIEEMKEEDK---VVLELSSFQLMTMKEEINC---ALVTNLSPNHLDIHKDMDE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++F + L +L N N +K + + +I++ A ++
Sbjct: 207 YVDAKKNIFKYQEVNDLLVLNRDNDITNSLVKEAKSRVMQFSR--KEEIESGAYLNGDKL 264
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+G L ++K+ G HN N +AA ++ D +E++ HR +
Sbjct: 265 VLLG-KEVCALEDIKLKGMHNVEN-LLAAFCLVSED--ASIESMAKVATTFTGVEHRCEF 320
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------AKFGYSGV- 310
V R+I GV + +DS A++ T GL K VIL+ G A+ G +
Sbjct: 321 V-REIDGVKYYNDSIASSPTRTIAGLRAF--EKPVILIAGGYDKHIPFEPLAEEGLDKIQ 377
Query: 311 -LIWKTLVNN-------------GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
L+ L N G++IP + +A+ A+ +A GD I LSP CAS
Sbjct: 378 ALVLTGLTKNKIKDAFDKAMKDRGINIPIYMEDGFNEAIYRAKDIANEGDIITLSPACAS 437
Query: 357 FDEFRNFEHRGMVFQEL 373
FD F NFE RG F+E+
Sbjct: 438 FDMFPNFEVRGNKFKEI 454
>gi|167614184|gb|ABZ89690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
aphidicola]
Length = 440
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 167/353 (47%), Gaps = 47/353 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+++TGTNGKSTV T V ++ G + F+GGN+G P+ E K + ++
Sbjct: 108 IISITGTNGKSTVATMVKKIAEKSGYKVFLGGNIGFPVLEML---------NQKANLYIL 158
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSH-----MVNTKL 158
E+SS+Q+E ++VVLN+T DHL+R+ + + Y K +++ + K
Sbjct: 159 ELSSFQLETTFS-LKSKIAVVLNITEDHLDRYPEGFEQYKKIKLSIYNQAEICLIKLKKG 217
Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
G PF Q ++ I I+ E + A V L NM +
Sbjct: 218 GKKPFDTQF-------KKYISFGICQNNNYHINYEKEKAILYCKNKKV---LDTSNMFLN 267
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HNY NA ++ + ++ A+N T++ PHR Q VH + ++W++DSK+T
Sbjct: 268 GYHNYENALISLAISDAMKFNREI-AIN-TLKQFSGLPHRFQTVHIN-NNISWINDSKST 324
Query: 279 NLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA---------- 327
N+++T L +L + +LLGG K +L + + I CF
Sbjct: 325 NVDSTKVALQNLNIKGTIWLLLGGDGKSSNFNIL-KEYFEKLKIKIYCFGKDGLSLSKLC 383
Query: 328 ------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
V +K A+ + GD ++LSPGC+S D+F NFE RG +F EL+
Sbjct: 384 KKKSVYVETLKQAIILISKKIQPGDVVLLSPGCSSKDQFSNFEERGNLFIELS 436
>gi|417321317|ref|ZP_12107857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
parahaemolyticus 10329]
gi|328471997|gb|EGF42874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
parahaemolyticus 10329]
Length = 437
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 174/383 (45%), Gaps = 60/383 (15%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQTVLAKGTPVVGDIELFAWAVNKPV--VAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALELLEQDADLYVLELSSFQLETTSSLKL-NAAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F N +L ++ +Q ++ P V ++ +
Sbjct: 193 GMADYRAAKLRIFD---NAELAVVNRDDQETYPEVE-----------MPVVTFGSDEQAY 238
Query: 198 SFEVPAVGVVSQLQLH--------NMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNS 247
EV G + L H +K++G+HN NA V A L G+D + AL +
Sbjct: 239 GLEVD--GSRTWLLDHGQRVIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNALKN 296
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKFG 306
+ HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K G
Sbjct: 297 YTGL----THRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK-G 350
Query: 307 YSGVLIWKTLVNNGLSIPCFAVA---------------NMKDAVNHARRMATNGDAIVLS 351
+ L + CF + M+D + +GD ++LS
Sbjct: 351 ADFTPLKPIFATLNLQLCCFGLDGDDFMPLHESAIRFNTMEDVIQQISSQLKSGDMVMLS 410
Query: 352 PGCASFDEFRNFEHRGMVFQELA 374
P CASFD+F NF RG F LA
Sbjct: 411 PACASFDQFDNFMARGDAFAVLA 433
>gi|167630126|ref|YP_001680625.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Heliobacterium
modesticaldum Ice1]
gi|167592866|gb|ABZ84614.1| udp-n-acetylmuramoylalanine--d-glutamate ligase, putative
[Heliobacterium modesticaldum Ice1]
Length = 465
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 115/355 (32%), Positives = 169/355 (47%), Gaps = 46/355 (12%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+A+TGTNGK+T + VG +L G FVGGN+G PL E A A + V E
Sbjct: 113 IAITGTNGKTTTTSLVGAILKAAGRNPFVGGNIGQPLVEEAQRLTA-------DRWVVAE 165
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
VSS+Q+E ++ F P S++LN+TPDHL+RH M+NY K +F + + + +L + +
Sbjct: 166 VSSFQLETTDQ-FHPRASLILNITPDHLDRHGDMENYRAIKARIFRNQGSEDITVLNYDD 224
Query: 166 QHLNEAIKGHRFNLAWIGAFP----GVKIDTEAKTASFEVP----AVGVVSQLQLHNMKV 217
+ R + + G +D F P AV V +LQ+
Sbjct: 225 PLVRTLAADCRSRVLFFSRLQKMEHGAYVD--GGMIRFAGPEGDMAVAAVDRLQIK---- 278
Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
G HN NA A +GL I V A + I+ + HRM+ V ++GV +V+DSK
Sbjct: 279 -GAHNVENALAACALTVGLGIAPAVVA-QAMID-FQPVEHRMEPVG-TVEGVAYVNDSKG 334
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLIW---KTLVNNGLSIPCFAVANM 331
TN +A+ + +++ GG+ K F +I K +V G + P A
Sbjct: 335 TNPDASIKAIESYD-RPVILIAGGKNKGSDFSELAEIIKKRVKAVVLVGQAAPVLEAALR 393
Query: 332 KDAVN-------------HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
K V A +MA GD ++LSP CAS D F N+E RG VF++L
Sbjct: 394 KAGVEAIKLVDTFDATVLEAAQMAEPGDVVLLSPACASLDMFPNYEVRGQVFKDL 448
>gi|238019064|ref|ZP_04599490.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
gi|237864319|gb|EEP65609.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
Length = 456
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 180/372 (48%), Gaps = 44/372 (11%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A ++ I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVEVAYEL--SKSPIVAVTGTNGKTTTTTLLTKVLEGTGKPVRVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E K+F P +++LN+T DHL RHKTM+NY
Sbjct: 150 VAY-------SMPADGFLVAELSSYQLETI-KHFRPIGAIMLNITADHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFE 200
K +F + ++T +L + + + H ++ P G D + +
Sbjct: 202 AKERIFENQLSTDFMVLNIDDPIVADMEHRVLSHILKISQHQVVPNGAYYDKGQCYVTKD 261
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNSTIEILRTPPHR 258
A V+ +H + G HN N L+V+ L +GV E ++ I HR
Sbjct: 262 GIATPVIGSDDIH---IPGSHNIEN----ILTVIALTYVLGVPAETIHRIISEFHGVEHR 314
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF-----------GY 307
++ V + I G+T+ +DSKATN+++ L ++L GG K +
Sbjct: 315 LERV-KTIDGITFYNDSKATNVDSVVKALESFD-QSVILLAGGHDKMTPLEDFMQLVKDH 372
Query: 308 SGVLI--------WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
+ +I ++ P + ++MKDAV ++A GD ++LSP C+SFD
Sbjct: 373 TKAVIFMGEAADRFEAAAKEAGVQPIYRASSMKDAVEQGYKLADQGDIVLLSPACSSFDW 432
Query: 360 FRNFEHRGMVFQ 371
+ FE RG F+
Sbjct: 433 YSCFEERGDDFK 444
>gi|340347383|ref|ZP_08670492.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
dentalis DSM 3688]
gi|433651150|ref|YP_007277529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prevotella
dentalis DSM 3688]
gi|339609475|gb|EGQ14347.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
dentalis DSM 3688]
gi|433301683|gb|AGB27499.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prevotella
dentalis DSM 3688]
Length = 443
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/381 (27%), Positives = 182/381 (47%), Gaps = 51/381 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + K++ +TG+NGK+T + + + G +A + GN+G
Sbjct: 82 LMAQGTHIISEIEFAGRYT--HAKMICITGSNGKTTTTSLIYHIFKAAGYDAGLAGNIG- 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
H +AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R+
Sbjct: 139 -------HSLALQVAEEPHEYYIIELSSFQLD--NMYNFRSNIAILLNITPDHLDRYDFK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE----AIKGHRFNLAWIGAFPGVKI 190
+NY K + + + P Q L++ A+K L G+ +
Sbjct: 190 FQNYVDAKMRILQNQTEDDSFIFWNDDPVIKQELDKYDIRAVKCPFSELKEKGSIGYM-- 247
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-GVDVEALNSTI 249
E E P + Q +L + G+HN +N+ A L+ +I G+ E + ++
Sbjct: 248 --EEGQYKLEFPTPFNMEQEEL---SLTGKHNIYNSLAAGLAS---NISGIKKEIIRKSL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG 309
HR++ V D+ GV +++DSKATN++A L ++ +I+ G YS
Sbjct: 300 SDFPGVEHRLEKV-CDVAGVHYINDSKATNVDACWYALESMRTPTILIIGGKDKGNDYSE 358
Query: 310 V--LIWKTLVN---------------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
+ L+ + V + L IP +M++ V MA GD ++LSP
Sbjct: 359 IQELVKQKCVGLVYLGADNAKLHANFDHLGIPVRDTHSMQECVAACYDMARPGDTVLLSP 418
Query: 353 GCASFDEFRNFEHRGMVFQEL 373
CASFD F+N E RG F+ L
Sbjct: 419 CCASFDLFKNMEDRGDQFKTL 439
>gi|440742327|ref|ZP_20921653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP39023]
gi|440377650|gb|ELQ14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae BRIP39023]
Length = 448
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 172/364 (47%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN NA A G +G+ +A+ +++ HR Q + R+ +GV +
Sbjct: 266 RELKVRGAHNQSNALAALAL--GHAVGLPFDAMLASLREFTGLEHRCQWL-REHEGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVAEHCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++P V ++ AV + ++A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AQLIAQAL---GDAVPLVHVDTVQAAVEQSAKLAQRGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|58038641|ref|YP_190605.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Gluconobacter
oxydans 621H]
gi|58001055|gb|AAW59949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gluconobacter
oxydans 621H]
Length = 476
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 168/373 (45%), Gaps = 59/373 (15%)
Query: 25 GKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
G +++S+ + + + +S +AVTGTNGKST + + G GGNLG
Sbjct: 119 GIQILSDAEILYRAVRKSGSKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGT- 177
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ALP P V V+E+SSY +E +++ + +LNLTPDHL+RH M
Sbjct: 178 ------ASLALPL-LPDDGVYVIEMSSYMLERLDRFHA-NAACLLNLTPDHLDRHGDMAG 229
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA K H+F +M L ++ + W A I ++ + +V
Sbjct: 230 YAAAKAHVFDNMGPDDLAVIGMDDD--------------WCRA-----IASQVASRGVQV 270
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + GRHN N V A + +G+D A+ + ++ HR+Q
Sbjct: 271 VELDADALPPYDGPALPGRHNAQN--VGAALTIASHLGLDEAAIRTGLKSFPGLEHRLQK 328
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V + GV++++DSKATN EA L K + + GG AK
Sbjct: 329 V-AECDGVSFINDSKATNAEAVSKALAAYD--KVMWIAGGVAKAGGIESLAPFFRHIAQA 385
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA--TNGDAIVLSPGCASFDEF 360
G ++ TL +G +P ++ AV A + A N ++LSP CASFD+F
Sbjct: 386 FLIGQDADVLAATLETHG--VPFQQCGTLEKAVPAAFKAALDENIPVVLLSPACASFDQF 443
Query: 361 RNFEHRGMVFQEL 373
R+FE RG F ++
Sbjct: 444 RSFEDRGSHFLQI 456
>gi|398337710|ref|ZP_10522415.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira kmetyi
serovar Malaysia str. Bejo-Iso9]
Length = 464
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 180/398 (45%), Gaps = 75/398 (18%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D + +I+ VTGT+GKST + +L + GGNLG P +
Sbjct: 80 VFSEIDLGKKFF--HGRIIGVTGTDGKSTTTSLTAHLLRKDFSDLQEGGNLGIPFTSF-- 135
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
SK +AV+E+SSYQ++ + VSV LNL PDHLERHKTM+NY K
Sbjct: 136 -------SKKPISLAVLELSSYQLD-DSSSLNLNVSVFLNLAPDHLERHKTMENYFQAKL 187
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+ + + N L+ ++ + E I+G + +F T + A + ++ +
Sbjct: 188 KI-ADLFNPGHTLVV--SEKIREKIEGSVSFQCKLKSFG----RTSSSDAFLDENSLTIR 240
Query: 208 SQLQLHNMK---VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ L +++ + G HN N A + L+ IG E++ + I + + PHR QI
Sbjct: 241 TSLFTYDISRFHLPGTHNRENLAASILAAEA--IGGKPESIQAQIPLFQGLPHRFQIAGE 298
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAK---------FGYSGV--- 310
G+++++DSK+TNL + G+ K C+I LGG+ K F G+
Sbjct: 299 K-HGLSFINDSKSTNLHSMLAGMATWKNLPQTCLI-LGGRPKQEDPKPLYDFLIRGIGSV 356
Query: 311 -------LIWKTLVNNGLSIPCFAVANMKDAV------NHARRMATNGD----------- 346
+W+ + N + FA N+ DA N A++ D
Sbjct: 357 VLIGEARSVWEEGIRNTIGDKLFAAENLNDAFGIFKNGNIISETASSADKTDVSEKTVSK 416
Query: 347 -----------AIVLSPGCASFDEFRNFEHRGMVFQEL 373
++V SP CASFD+++NFE RG F L
Sbjct: 417 KIRLSNGAEIGSVVFSPACASFDQYKNFEERGNHFLSL 454
>gi|374584607|ref|ZP_09657699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptonema illini
DSM 21528]
gi|373873468|gb|EHQ05462.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptonema illini
DSM 21528]
Length = 460
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 176/389 (45%), Gaps = 65/389 (16%)
Query: 28 VMSELDFAAQVIPRSI---KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++ +LD + ++ +I+A+TGT+GKST + +L GI+A GN G P S
Sbjct: 95 IIGDLDLGYLYLKKNTGNARIVAITGTDGKSTTTALIAHLLREAGIQALECGNYGLPFSA 154
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A P++ V V E SSYQ+E + YF P V ++LN+ PDHL+R+ M +Y
Sbjct: 155 AVLQ----PTT-----VFVCECSSYQLEDLH-YFKPDVGLLLNIAPDHLDRYAGMADYLR 204
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA--FPGVKIDTEAKTASFEVP 202
K +LFS ++ G + IGA FPG ++++ + P
Sbjct: 205 AKLNLFSLQEKEDFAVIGPGILATCHEL--------GIGADEFPG-RLNSVLTEVGEDKP 255
Query: 203 AVGV-VSQLQLHNMKVMGRHNYHN-----AAVAALSVLGLDIGVDVEALNSTI----EIL 252
A + + L V N N A + AL G+D G A + +
Sbjct: 256 AARLGDATLAWSEFAVNSETNRRNAVMTLAGIEALLKKGVDGGYAATAFYERVLRGLKSF 315
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI 312
R PHR +IV + +GV +V+DSKAT + A + + G K +LLGG K S +
Sbjct: 316 RGLPHRQEIVV-EREGVIFVNDSKATTVHAALSAVASFPGKKVYLLLGGLDK--NSDFSL 372
Query: 313 WKTLVNNGLSIPCFAVANMK-------------------DAVNHARRM------ATNGDA 347
++ GL I F A K +A+ ARR +T D+
Sbjct: 373 FRE--GEGLRIYPFGKAADKIAEQTGVTRRFAGLEEAFYEALREARRSTAYFGGSTQPDS 430
Query: 348 IV-LSPGCASFDEFRNFEHRGMVFQELAF 375
++ LSP CAS D +RN+E RG F+ LA
Sbjct: 431 VILLSPACASQDAYRNYEERGEHFRRLAL 459
>gi|398993485|ref|ZP_10696434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM21]
gi|398134671|gb|EJM23812.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM21]
Length = 448
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 172/364 (47%), Gaps = 60/364 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +K+
Sbjct: 221 ---SRPLMGEGQPCWTFGLGKPDFKAF-GIREEEGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ + + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLTALRSFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D++G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIEG-KIVLIAGGDGKGAEFNDLRDPVAANCRAVILMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF---- 370
+ G ++P V+++ +AV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRVSSLVEAVAKCRTAAEPGDVVLLSPACASFDMFKNYEDRGHQFVQAV 444
Query: 371 QELA 374
+ELA
Sbjct: 445 EELA 448
>gi|398889455|ref|ZP_10643298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM55]
gi|398189577|gb|EJM76851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM55]
Length = 448
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/355 (30%), Positives = 164/355 (46%), Gaps = 54/355 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +K+
Sbjct: 221 T---RPLIGEGQPCWTFGLTKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S++ HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSSLRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGLMDLKGH---KCVILLGGQAK--------------------FGYSGVLIWKT 315
N+ A + L K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIVGKVVLIAGGDGKGAEFKDLRDPVAANCRAVVLMGRDSDKIGEA 388
Query: 316 LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P ++ +AV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 389 I---GDAVPLIRAGSLIEAVEQCRAAAQPGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|78779845|ref|YP_397957.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9312]
gi|118595673|sp|Q319C4.1|MURD_PROM9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|78713344|gb|ABB50521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9312]
Length = 468
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 175/375 (46%), Gaps = 55/375 (14%)
Query: 31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCI 90
E++ A +++ + + +TGTNGK+TV + +L + A GN+G PL + A+
Sbjct: 109 EINVAWEIL-KETNWIGITGTNGKTTVTHLLSHILCENKLYAPFAGNIGTPLCKYAY--- 164
Query: 91 ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF 150
K V E+SSYQ+EI + P + + T DHLERHKT++NY K L
Sbjct: 165 --SKKYEKIDWVVAELSSYQIEISPE-VKPNIGIWTTFTEDHLERHKTLENYFNIKKSL- 220
Query: 151 SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ- 209
+ + + + +++L + H +L+ GV I T ++F + Q
Sbjct: 221 --LEKSDFRIYNYDDKNL----RNHYSSLS-----KGVWITTSLDKSNFIQCDYWIDDQA 269
Query: 210 ---------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+L + + G HN N + + +G+ + + ++ + PHRM+
Sbjct: 270 FIIERGKRLFKLEHFSLKGIHNLQNLLLVIAA--ARKVGLSGKKIKDSLSNYKQLPHRME 327
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---------------- 304
++++ + ++DSKATN +++ G+ ++G + +I+ GG+ K
Sbjct: 328 TIYKN-NDLEIINDSKATNFDSSIAGINSIEG-QIIIISGGRLKGNKYSEWVQVLKQKVK 385
Query: 305 ----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD--AIVLSPGCASFD 358
FG S ++ L+N G F + +K+ +N N ++ SP C+SFD
Sbjct: 386 CIFLFGESSKVLKMALINEGFKKDIFEFSELKELLNFVFHYLQNNKVGTLLFSPSCSSFD 445
Query: 359 EFRNFEHRGMVFQEL 373
+F+N+E RG F++L
Sbjct: 446 QFKNYEERGDHFKKL 460
>gi|323343872|ref|ZP_08084099.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
oralis ATCC 33269]
gi|323095691|gb|EFZ38265.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
oralis ATCC 33269]
Length = 443
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 179/378 (47%), Gaps = 45/378 (11%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G ++SE++FA + K++ +TG+NGK+T + + + G + + GN+G
Sbjct: 82 LMAQGTHIISEIEFAGRYT--HAKMICITGSNGKTTTTSLIYHIFKTAGYDVGLAGNIGR 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ + ++E+SS+Q++ N Y F ++++LN+TPDHL+R++
Sbjct: 140 SL--------ALQVAEEPHEYYIIELSSFQLD--NMYKFHANIAILLNITPDHLDRYEYC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF--PGVKIDTEAKT 196
M++Y K + + TK + N ++ I H I A P ++ +
Sbjct: 190 MQHYVDAKMRIIQN--QTKQDSFIYWN---DDPIIKHELEKYDIHAVKCPFSELKEKGSI 244
Query: 197 ASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
E + ++ + + G+HN +N+ A ++ I D+ + ++
Sbjct: 245 GYIEEGQYKIEKPTPFNMEQEELSLTGKHNIYNSLAAGIASNISGIKKDI--IRKSLSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV-- 310
HR++ V + + GV +++DSKATN++A L +K +IL G YS +
Sbjct: 303 PGVEHRLEKVCK-VGGVQYINDSKATNVDACWYALESMKTPTILILGGKDKGNDYSSIKE 361
Query: 311 LIWKTLVN---------------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
L+ K V + L IP +M+D V MA GD ++LSP CA
Sbjct: 362 LVRKKCVGLVYLGADNTKLHQNFDSLGIPVRDTHSMEDCVKACYDMAKPGDTVLLSPCCA 421
Query: 356 SFDEFRNFEHRGMVFQEL 373
SFD F+N E RG F+ L
Sbjct: 422 SFDLFKNMEDRGNQFKNL 439
>gi|255020011|ref|ZP_05292084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
caldus ATCC 51756]
gi|254970540|gb|EET28029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
caldus ATCC 51756]
Length = 454
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 167/356 (46%), Gaps = 55/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSS-KPKFQVAV 103
I A+TG+NGKSTV T +G+M G VGGNLG P + LP + P+ ++ V
Sbjct: 111 IAAITGSNGKSTVTTLLGEMAKAAGRRVAVGGNLGTPALD------LLPEAGAPEPELYV 164
Query: 104 VEVSSYQMEIPNKYFC----PTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159
+E+SS+Q+ ++C P V+ +LNL+PDHL+ H M+ Y K +F M
Sbjct: 165 LELSSFQL-----HYCHALRPRVAAILNLSPDHLDWHGDMEAYLAAKARIFRTMGEGDTL 219
Query: 160 LLPFGNQHLNE-------AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
+L + L ++ RF G P ++D A + P+ + + L
Sbjct: 220 VLNGEDPALQSLPAKAPAGVEIRRF-----GHTP--QLDAWADDLALHWPS---AAPMPL 269
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
++ + G+HN N V A +++ + + A+ R PHR+Q V R + GV +
Sbjct: 270 ADIHLPGKHNGEN--VLAAALMANALNLPETAIRQAAADFRGLPHRLQWVAR-VGGVDYY 326
Query: 273 DDSKATNLEATCTGLMDLKGHKCVILLGGQAK-----------FGYSGVL-------IWK 314
DDSK TNL A+ + L G V++LGG AK G G + I +
Sbjct: 327 DDSKGTNLGASLRAIQALPG-PLVLILGGDAKGADLSPLREALRGQRGAVLLGKDAAILE 385
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
++ L M AV A MA GD ++LSP CAS D FR++ RG F
Sbjct: 386 AILAGSLPTLRIGEGGMSRAVRAAAAMAQPGDQVLLSPACASLDMFRDYRDRGRQF 441
>gi|403389166|ref|ZP_10931223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
sp. JC122]
Length = 458
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 179/381 (46%), Gaps = 55/381 (14%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ + P K+ +TG++GK+T T V +L G +VGGN+G PL
Sbjct: 99 EEGTYITSEMEEFVKYCP--AKVYGITGSDGKTTTTTLVYNILKESGYNTWVGGNIGTPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
F I + V+E+SS+Q+ + ++VV NL+P+HL+ HK M Y
Sbjct: 157 ----FTNIEKMKETDR---VVLELSSFQLMTMDT--STDIAVVTNLSPNHLDMHKDMNEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQ----HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+K ++F + L +L N +NEA KG + + + + ++ A
Sbjct: 208 VDSKKNIFKYQDKENLLVLNLDNDITKGMINEA-KGKVYTFS--------RKEKISEGAY 258
Query: 199 FEVPAVGVVSQL--QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
FE + V QL + +K+ G HN N +AA S ++G+ EA+ +
Sbjct: 259 FEDGKLYVKGQLVCRKDEIKLKGMHNVENL-LAAFSATCDEVGI--EAMKNVAINFGGVE 315
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------FGYSGV 310
HR ++V R + GV + +DS A++ T L + +++ GG K + G
Sbjct: 316 HRSELV-RKLDGVEYYNDSIASSPTRTLASLKAFE-KPVIVIAGGYDKNLAFDILAFDGY 373
Query: 311 LIWKTLV------------------NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
K L+ G+ + V+ +++AV ++++A NGD + LSP
Sbjct: 374 PYIKELILLGATKDKIKHEFNRLKEEKGIEVSIHEVSTLEEAVELSKKLAKNGDIVTLSP 433
Query: 353 GCASFDEFRNFEHRGMVFQEL 373
CASFD F NF RG+ ++E+
Sbjct: 434 ACASFDMFPNFAVRGLKYKEI 454
>gi|422675673|ref|ZP_16735015.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aceris str. M302273]
gi|330973389|gb|EGH73455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aceris str. M302273]
Length = 448
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 173/364 (47%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL + ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDEVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MSV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ +GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHEGVDYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVARHCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++ V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVALVRVDTVQAAVEHSAKLAQRGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|365877481|ref|ZP_09416985.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Elizabethkingia
anophelis Ag1]
gi|442587756|ref|ZP_21006571.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Elizabethkingia
anophelis R26]
gi|365754914|gb|EHM96849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Elizabethkingia
anophelis Ag1]
gi|442562610|gb|ELR79830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Elizabethkingia
anophelis R26]
Length = 459
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/381 (26%), Positives = 186/381 (48%), Gaps = 39/381 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + Q G R+ SEL+FA KI+AVTG+NGK+T + + +L + G
Sbjct: 85 KAEIVGKIHQKGIRLSSELEFAYHFT--DAKIIAVTGSNGKTTTTSLIYHILKNDGYNVG 142
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM-EIPNKYFCPTVSVVLNLTPDH 132
+GGN+G A + F V+EVSS+Q+ +I N F P +S++LNL+ DH
Sbjct: 143 LGGNIGKSF--------AYQVATEDFDYYVLEVSSFQLDDIQN--FRPYISLLLNLSQDH 192
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID 191
L+++ + YAL K + + N + ++ + ++ N I K++
Sbjct: 193 LDQYNYNYEEYALAKFRIAENQENDNYFIYNKDDEMSQKILQSLEINATMIPFSLKEKLN 252
Query: 192 TEAKTASFE-VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
+ E V + ++++ ++ ++G HN N+ A S+ G + + E++ +++
Sbjct: 253 EGGYSVDNELVVKLQEDFRMKISDLSLVGNHNVANSLAA--SIAGKLLNISNESIRNSLM 310
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV 310
+ PHR++ V I V +++DSKATN+ A L +K + + ++GG K G
Sbjct: 311 TFQAVPHRLEQVAV-INDVKYINDSKATNVNAAYYALESVK-YPAIWIVGGIDK-GNDYT 367
Query: 311 LIWKTLVNNGLSIPC-------------------FAVANMKDAVNHARRMATNGDAIVLS 351
I + +I C F ++M++ V + +A GD ++L+
Sbjct: 368 EIEDLVKKKVRAIVCLGLDNEKIIQFFRNKKDLIFETSSMEECVKLCKSIAEPGDTVLLA 427
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P C+SFD F+++E RG F++
Sbjct: 428 PCCSSFDLFKSYEDRGDQFKK 448
>gi|78213668|ref|YP_382447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. CC9605]
gi|118595700|sp|Q3AHP0.1|MURD_SYNSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|78198127|gb|ABB35892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
CC9605]
Length = 461
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 180/389 (46%), Gaps = 54/389 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G +V E+D A + + I + +TGTNGK+TV + +L G+ A +GGN
Sbjct: 86 LVQLRSEGVQVRGEMDTAWDAL-QQIPWIGITGTNGKTTVTHLLSHVLEAAGLTAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G LS A C +KP+ V+E+SSYQ+E P + + LTPDHLERH
Sbjct: 145 IG--LSAAELACQIGSGAKPRPDWLVMELSSYQIEAA-PAVAPKIGIWTTLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA-WI---GAFPGVKIDTE 193
+++ Y K L ++ L + L + + +N W+ GA P +
Sbjct: 202 SLEAYRAIKRGLLER---SECALFNADDPDLRQ--QRSSWNRGTWVSSEGAHP------D 250
Query: 194 AKTASFEVPAVGVV--SQLQLHNMKVM---GRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ A + G+V + +L V+ GRHN N + ++ L+ G+ + +
Sbjct: 251 NQPADLWIDDEGMVRNNTTRLFAADVLAMPGRHNRQN--LLLVTAAALEAGLSPQQIADA 308
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-Y 307
+ PHR++ + + G + +DSKATN +A GL ++G V+L GGQ K G
Sbjct: 309 LRTFPGVPHRLEQLGT-LAGASVFNDSKATNYDAAEVGLRAVQG-PVVVLAGGQTKQGDA 366
Query: 308 SGVLIWKTLVNNGLSIPCFAVA---------------------NMKDAVNHARRMAT--N 344
SG L K L + S+ F ++ AVN A
Sbjct: 367 SGWL--KQLQSKACSLILFGAGADELASLAKAAGYPGELLQCPELESAVNLAEGAVQRHQ 424
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+++LSP CASFD++R+FE RG F+ L
Sbjct: 425 ASSLLLSPACASFDQYRDFEARGEHFRTL 453
>gi|260899193|ref|ZP_05907588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus AQ4037]
gi|308107131|gb|EFO44671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
parahaemolyticus AQ4037]
Length = 437
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 173/383 (45%), Gaps = 60/383 (15%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQTVLAKGTPVVGDIELFAWAVNKPV--VAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + LNL+ DH++R++
Sbjct: 143 IGVP---------ALELLEQDVDLYVLELSSFQLET-TLSLKLKAAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F H +L ++ +Q ++ P V ++ +
Sbjct: 193 GMADYRAAKLRIFDH---AELAVVNRDDQETYPEVE-----------MPVVTFGSDEQAY 238
Query: 198 SFEVPAVGVVSQLQLH--------NMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNS 247
EV G + L H +K++G+HN NA V A L G+D + AL +
Sbjct: 239 GLEVD--GSRTWLLDHGQRVIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNALKN 296
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKFG 306
+ HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K G
Sbjct: 297 YTGL----THRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK-G 350
Query: 307 YSGVLIWKTLVNNGLSIPCFAVA---------------NMKDAVNHARRMATNGDAIVLS 351
+ L + CF + M+D + +GD ++LS
Sbjct: 351 ADFTPLKPIFATLNLQLCCFGLDGDDFMPLHESAIRFNTMEDVIQQISSQLKSGDMVMLS 410
Query: 352 PGCASFDEFRNFEHRGMVFQELA 374
P CASFD+F NF RG F LA
Sbjct: 411 PACASFDQFDNFMARGDAFAVLA 433
>gi|160873536|ref|YP_001552852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
baltica OS195]
gi|378706777|ref|YP_005271671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS678]
gi|418025227|ref|ZP_12664207.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS625]
gi|160859058|gb|ABX47592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS195]
gi|315265766|gb|ADT92619.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
OS678]
gi|353535640|gb|EHC05202.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
OS625]
Length = 439
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 176/373 (47%), Gaps = 54/373 (14%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+M GI VGGN+G P
Sbjct: 90 GIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMAREAGIAVAVGGNIGVP-- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AL + V+E+SS+Q+E + C V+ LN++ DH++R+ + Y
Sbjct: 148 -------ALDLLHENADLFVLELSSFQLETTHSLKC-VVATCLNISEDHMDRYSDIAAYR 199
Query: 144 LTKCHLFSHM------VNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
K L+ + KL + P E + + F LA A D++
Sbjct: 200 EAKLRLYKQSRAVLFNRDDKLTVPP-------EPMNQNSFGLAAPEADEWGISDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTP 255
S E+ + + + ++G HN+ N AA+A + V +GVD + +
Sbjct: 253 SSEI--------MPITEVSLIGSHNHANLLAAMALVDV----VGVDKQVMAKVARSFTGL 300
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAK---FGYSGV 310
HR ++V GVT+V+DSKATN+ AT L L H +++ GG K F GV
Sbjct: 301 SHRCEVVGIK-NGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFKPLGV 359
Query: 311 LIWK-----TLVNNGLSIPCFA-----VANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
+ K TL +G I V M AV A +AT+GD ++LSP CAS D +
Sbjct: 360 ALAKVTHLITLGRDGKKIAALKDGAVRVETMAAAVAKAAELATSGDIVLLSPACASLDMY 419
Query: 361 RNFEHRGMVFQEL 373
NF RG F+ L
Sbjct: 420 SNFMARGDDFRNL 432
>gi|399052145|ref|ZP_10741710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus sp.
CF112]
gi|398050011|gb|EJL42401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus sp.
CF112]
Length = 454
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 185/379 (48%), Gaps = 64/379 (16%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A+Q+ I+ +TG+NGK+T T VGQ+L G++ VGGN+G L
Sbjct: 96 VVTEVELASQI--AKAPIIGITGSNGKTTTTTLVGQILKEAGLDVLVGGNIGTVL----- 148
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
C + P Q V E+SS+Q+ + + F P + V+LNL P HL+ H TM+ Y K
Sbjct: 149 -CGLAEEAGPD-QWLVAELSSFQL-MGTREFRPHIGVLLNLYPAHLDYHHTMEAYLDAKL 205
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF--PGVKIDTEAKTA 197
+F++ + +LPF + + + GAF GV T+ +
Sbjct: 206 KMFANQTADDIAILPFDQPEILAKCGELPARVYYFSKTQQVPRGAFVQDGVIRFTDGQGQ 265
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP- 256
S ++ AV ++ L N A+AA+ V L G + A+ +++L T P
Sbjct: 266 SEDIIAVADMTVPHLDN------------ALAAILVAKL-AGANTSAI---VQVLSTFPG 309
Query: 257 --HRMQIVHRDIQGVTWVDDSKATNLEAT--------------CTGL---MDLKGHKCVI 297
HRM+ V I GV + +DSKATN EA C GL +D + + +
Sbjct: 310 VEHRMEYVD-SIAGVKYYNDSKATNPEAASRALQACQEPVVWICGGLDRGVDFR--ELLP 366
Query: 298 LLGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
++ G+ K G + ++ G++ V ++ AV A R+A +GD ++LSP
Sbjct: 367 VMKGRVKAVVALGQTAPILLARAEEAGIN-ERIHVDTVEKAVLAASRLAQSGDVVLLSPA 425
Query: 354 CASFDEFRNFEHRGMVFQE 372
CAS+D F +FE RG +F++
Sbjct: 426 CASWDMFPSFEVRGSMFKD 444
>gi|393722596|ref|ZP_10342523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
PAMC 26605]
Length = 377
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 166/349 (47%), Gaps = 58/349 (16%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K++ +TGTNGKST V +L GI + +GGN+G P+ E LP+S V V
Sbjct: 59 KVVGITGTNGKSTTTALVHHILQTAGIPSLMGGNIGLPILEQD----PLPASG----VYV 110
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ + C V+V+LNLTPDHL+R+ + YA +K LF+ T ++
Sbjct: 111 LELSSYQIDLTHSLDC-DVAVLLNLTPDHLDRYDGFEGYAASKARLFAMQSATHAAVIGI 169
Query: 164 GNQH---LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
G+ + + +L I PGV +D Q + G
Sbjct: 170 GDTPSALIARGLSARGEHLTKIA--PGVCMD-------------------QSRWPSLQGP 208
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN NA A + L GV ++ +E PHRM+ V GV +V+DSKATN
Sbjct: 209 HNAQNALAAIAACQAL--GVPEAMIDRGLESFAGLPHRMERVAVR-NGVAFVNDSKATNP 265
Query: 281 EATCTGLMDLKGHKCVILLGGQAK----------FGY--------SGVLIWKTLVNNGLS 322
E+T L + +LGG+AK FG+ + +++
Sbjct: 266 ESTAPALAAFS--RVHWILGGKAKADDLDACAPSFGHVVKAYTIGEAAQRFAAILDG--K 321
Query: 323 IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
+P ++ AV HA A GD ++LSP CASFD+FR+FE RG F+
Sbjct: 322 VPVEVSGDLATAVAHAAAAAQPGDTVLLSPACASFDQFRDFEDRGDQFR 370
>gi|188585928|ref|YP_001917473.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|226722938|sp|B2A2H0.1|MURD_NATTJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|179350615|gb|ACB84885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 461
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 190/387 (49%), Gaps = 57/387 (14%)
Query: 25 GKRVMSELDFAAQVIPRSI-----KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
G V+ EL+ Q++ + +++AVTGTNGK+T +G+ G +V GN+G
Sbjct: 93 GMPVIDELELGYQILNYRLTKPEERLIAVTGTNGKTTTTNLIGEFFEASGYSIYVAGNVG 152
Query: 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
PLS+ IA + F V+EVSS+Q+E K F P VS++LN+TPDHL+ H +
Sbjct: 153 LPLSQ-----IACEVTDTDF--IVLEVSSFQLEFI-KGFRPKVSMILNITPDHLDWHGDL 204
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFN-----LAWIGAFPGVKID 191
+Y K ++F + + ++ ++ LN KG + N L G+F I+
Sbjct: 205 DSYIRAKMNIFKNQTSKDFSVVNVDDETTFGLNRESKGRKLNFSKNSLRTEGSF----IE 260
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
+ ++ ++ + H++ + G HN N A + L I E + +T++
Sbjct: 261 DDHLVINYLDTKTSIIHK---HDILLPGEHNLENVLAATTATLPFSIS--EENIRNTLKA 315
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------- 304
HR+++V R++ GV +++DSK TN+EA+ + +++ GG+ K
Sbjct: 316 FSGVDHRLELV-RELNGVKFINDSKGTNVEASLKAINSFDS--MILIAGGKDKGADFSEF 372
Query: 305 --------------FGYSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMATNGDAIV 349
FG + I L + + P + V N++ AV A + A +GD ++
Sbjct: 373 AEAIKEKGVKKVYLFGETYKKIASAL--DKVYYPEYYIVNNLETAVTGAYQDAISGDVVL 430
Query: 350 LSPGCASFDEFRNFEHRGMVFQELAFS 376
LSP CAS+D + +FE RG F+ + +S
Sbjct: 431 LSPACASWDMYDSFEKRGNHFKSIVYS 457
>gi|290969170|ref|ZP_06560695.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
genomosp. type_1 str. 28L]
gi|290780676|gb|EFD93279.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
genomosp. type_1 str. 28L]
Length = 454
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 185/376 (49%), Gaps = 39/376 (10%)
Query: 21 LLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
LLQ R V SE++ A +V ILAVTGTNGK+T T +G+M+ G + VGG
Sbjct: 87 LLQEAVRRRIPVWSEVEVACRVT--DAAILAVTGTNGKTTTTTLLGEMVKASGRQTAVGG 144
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+G L++A + P VAV E+SS+Q+E+ + +V+LN+TPDHL+RH
Sbjct: 145 NIGVGLAQAV-------TDLPPQAVAVAELSSFQLELTSSLHA-VGAVILNITPDHLDRH 196
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
TM+ Y+ K +FS+ T +L + + + + + + V T K
Sbjct: 197 HTMEAYSAAKERIFSNQEATDTAVLNYDDDRVRNMQARRKGKVVFFSTQGEVPEGTFYKD 256
Query: 197 ASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
+ G + + + ++++ G HN N A L + I + V + S ++ R
Sbjct: 257 HQLMLRHDGTDTLICRDSDLQLFGAHNIQNCLAAVLLATAVAIPLPV--IRSVLKRFRGV 314
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------FGYSG 309
HR++ V R +QGV + +DSK TN++A+ L GH +++ GG K F
Sbjct: 315 EHRLEKV-RVLQGVPYYNDSKGTNVDASIKALEAFSGH-LILIAGGHDKMTPLDAFMKLA 372
Query: 310 VLIWKTLVNNGLSIPCFAVA--------------NMKDAVNHARRMATNGDAIVLSPGCA 355
TL+ G S FA A NM+ AV AR++A +VLSP C+
Sbjct: 373 ARKVDTLILVGESADRFAAAAKKAGVRDIRNVGYNMEKAVMTARKLARPPQQVVLSPACS 432
Query: 356 SFDEFRNFEHRGMVFQ 371
SFD + N+E RG VF+
Sbjct: 433 SFDMYDNYEQRGRVFK 448
>gi|160891418|ref|ZP_02072421.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
gi|317478449|ref|ZP_07937609.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
4_1_36]
gi|156858825|gb|EDO52256.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
uniformis ATCC 8492]
gi|316905338|gb|EFV27132.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
4_1_36]
Length = 443
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 184/377 (48%), Gaps = 46/377 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 81 LKEKGTPIISEIEFAGRYT--DAKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + + V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 139 SL--------ALQVATEQHDYYVIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 188
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+ Y K + + + + + + H A + F VK D E
Sbjct: 189 MQKYVDAKFRITQNQTPEDAFIFWNDDPIIKRELDKHGLR-AHLYPFAAVKEDGAIAYVE 247
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G+ E + + +
Sbjct: 248 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISA-NL-AGIRKEYIRKALSDFK 302
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV-- 310
HR++ V ++GV++++DSKATN+ + L + G K V++LGG+ K Y+ +
Sbjct: 303 GVEHRLEKVAT-VRGVSFINDSKATNVNSCWYALQSMTG-KTVLILGGKDKGNDYTEIED 360
Query: 311 --------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIVLSPGC 354
L++ L N + L +P V M+DAV A ++A G+ ++LSP C
Sbjct: 361 LVREKCSALVYLGLHNEKLHAFFDRLGLPVADVQTGMQDAVEAAFKLAKKGETVLLSPCC 420
Query: 355 ASFDEFRNFEHRGMVFQ 371
ASFD F+++E RG F+
Sbjct: 421 ASFDLFKSYEDRGNQFK 437
>gi|322374681|ref|ZP_08049195.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. C300]
gi|321280181|gb|EFX57220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. C300]
Length = 450
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 174/371 (46%), Gaps = 44/371 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G +V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIQVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKEL-ASKTQATVVPFSTQEKVDGAYLEDGQLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+AA++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALAAIAVAKLR-GVDNQTIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
+Q V +IQGV + +DSK+TN+ AT L K +++ GG +
Sbjct: 314 LQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G S + + G++ ++ DA A +AT GD ++LSP AS+D
Sbjct: 373 KKMVILGQSAERVKRAAEKAGVT--YVDATDIADATRKAYELATQGDVVLLSPANASWDM 430
Query: 360 FRNFEHRGMVF 370
+ NFE RG +F
Sbjct: 431 YANFEVRGDLF 441
>gi|354603421|ref|ZP_09021419.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alistipes
indistinctus YIT 12060]
gi|353348801|gb|EHB93068.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alistipes
indistinctus YIT 12060]
Length = 452
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 177/378 (46%), Gaps = 47/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+SE++FA + S + + +TG+NGK+T T +ML + + GN+G
Sbjct: 82 LRERGIPVVSEIEFAGRYTDGS-RTICITGSNGKTTTTTLAYEMLRQADLSVGLAGNIG- 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
AL + F V+E+SS+Q++ Y F V V++N+TPDHL+R+
Sbjct: 140 -------QSFALEVATEYFDWYVIELSSFQLD--GMYDFRADVGVLMNITPDHLDRYDHK 190
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTA 197
++NY +K + + T + + E + H N+ P GVK TE A
Sbjct: 191 LQNYVDSKFRILQNQRATDKFVYCADDPLTLENLGRHDRNME---VLPFGVKC-TEGCAA 246
Query: 198 SFE-----VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
S + V G + + +K+ G HN +NA A S+ L GV E++ T+
Sbjct: 247 SLDGDTIRVRVDGKELSIGVDELKIKGVHNIYNAMAA--SIAALSAGVPPESICQTLRTF 304
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI 312
HR++ + GV +++DSKATN+++ L ++ V + GG K G +
Sbjct: 305 TGVEHRLEPCG-EYGGVQYINDSKATNVDSVWYALDSMR-RPTVWIAGGTDK-GNDYSRL 361
Query: 313 WKTLVNNGLSIPCFAVANMK-------------------DAVNHARRMATNGDAIVLSPG 353
+ + ++ C V N K +A+ A R A GD ++LSP
Sbjct: 362 FPLVEGRVKTLVCMGVDNAKLMREFAGRIPEIVDTHSLGEAMEAAVRSAAPGDTVLLSPA 421
Query: 354 CASFDEFRNFEHRGMVFQ 371
CASFD F+N+E RG F+
Sbjct: 422 CASFDLFKNYEQRGEQFK 439
>gi|94987544|ref|YP_595477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
intracellularis PHE/MN1-00]
gi|442556398|ref|YP_007366223.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
intracellularis N343]
gi|122063249|sp|Q1MPC1.1|MURD_LAWIP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|94731793|emb|CAJ55156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
intracellularis PHE/MN1-00]
gi|441493845|gb|AGC50539.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
intracellularis N343]
Length = 440
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 170/367 (46%), Gaps = 61/367 (16%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V+SE + A + K++A+TGTNGK+T+ + ML GI FVGGN+G PLSE
Sbjct: 106 QVLSETELAWYQLSNE-KVIAITGTNGKTTIASLCAAMLVEQGISVFVGGNIGTPLSEYV 164
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
K K V V+E+SS+Q++ + F P +++ N++ +HL+ H+ M Y K
Sbjct: 165 L-------CKKKVSVVVLELSSFQLQTCS-LFRPDIAICSNISINHLDYHRNMDEYISAK 216
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + + L +L PG+ EA S+ + A V
Sbjct: 217 LNICKNQCESDLAILK-----------------------PGM----EALVDSYNLKA-RV 248
Query: 207 VSQLQLHNM---KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
V L N +++G HN NA A L+ ++GV E + HR++ V
Sbjct: 249 VFYRDLGNFSTSRLLGVHNLENAEAAWLACK--ELGVTEEIAKKVVTTFEPLEHRLEQV- 305
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVL---IWKTLVNNG 320
R + GV +V+DSK T +EA L K ++L GG+ K G L I K + G
Sbjct: 306 RLLNGVLYVNDSKGTTVEALRAALESFK-QPILLLAGGRFKGGDLTSLRPIIKKQVRIVG 364
Query: 321 L--------------SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
L IP ++ AV +A NG+ I+L+P +SFD++ N+ R
Sbjct: 365 LFGNSREYFEDAWGDIIPITWDNTLEQAVKRLSNLAHNGEVILLAPATSSFDQYMNYIER 424
Query: 367 GMVFQEL 373
G F+ +
Sbjct: 425 GNDFKRI 431
>gi|312128117|ref|YP_003992991.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
[Caldicellulosiruptor hydrothermalis 108]
gi|311778136|gb|ADQ07622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Caldicellulosiruptor hydrothermalis 108]
Length = 458
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 185/374 (49%), Gaps = 40/374 (10%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 91 KKGVEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPF 149
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + + + V+E+SS+Q+E KYF P V +LN+TPDHL RH TM+NY
Sbjct: 150 -------IDTVETSSENTIFVLEISSFQLETI-KYFKPKVGCILNITPDHLNRHMTMENY 201
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA----FPGVK-IDTEAKTA 197
K +F ++ +L + N + I + N+ F V ++ +
Sbjct: 202 IKAKMRIFENIDEMGYTVLNYDNNVTRDLIGLAKGNVIVFSKTKTQFENVVFVENDVIYF 261
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE V+ + ++ + G+HN N A+AA+S L G++ + + ++ R H
Sbjct: 262 TFEGKTQEVMKKDEIF---IPGQHNLEN-ALAAISCT-LPFGIEKDTIEQVLKTFRGVEH 316
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLIWK 314
R++ V +I G+ + +DSK TN +A + K + +++ GG K F LI K
Sbjct: 317 RIEFVA-EINGIKFYNDSKGTNTDAAEKAISAFK-NPIILIAGGYDKGESFEKFVSLIAK 374
Query: 315 TLVN---------------NGLSIPCFA-VANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+ + F V+ +K+AV + A NGD ++LSP CAS+D
Sbjct: 375 RVKKVFLLGQTKHKIASELEKIGYKNFELVSTLKEAVRKSFESAQNGDVVLLSPACASWD 434
Query: 359 EFRNFEHRGMVFQE 372
F N+E RG +F+E
Sbjct: 435 MFENYEQRGRMFKE 448
>gi|282850404|ref|ZP_06259783.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
parvula ATCC 17745]
gi|282579897|gb|EFB85301.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
parvula ATCC 17745]
Length = 456
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 185/373 (49%), Gaps = 46/373 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A +V I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVELAYEV--SKSPIVAVTGTNGKTTTTTLLTKVLEGSGKPVHVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E KYF P +++LN+TPDHL RHKTM+NY
Sbjct: 150 VAY-------SMPAGGFLVAELSSYQLETI-KYFRPIGAIMLNITPDHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGN---QHLNEAIKGHRFNLAWIGAFP--GVKIDTEAKTASF 199
K +F + ++T +L + + H ++ A D + A
Sbjct: 202 AKERIFENQLSTDYLVLNIDDPVVADMEHRAPSHILKISQKKAVENGAYYADGQCYIAKD 261
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNSTIEILRTPPH 257
V A V++ +H + G HN N L+V+ L +GV VE ++ I H
Sbjct: 262 GV-AKFVIADEDIH---IPGSHNIEN----ILTVIALSHALGVPVETIHRIISEFHGVEH 313
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF----GYSGVLIW 313
R++ V + I G+T+ +DSKATN+++ L + ++L GG K + ++
Sbjct: 314 RLERV-KTIDGITFYNDSKATNVDSVVKALESFD-QQVILLAGGHDKMTPLEDFMELVKE 371
Query: 314 KT--LVNNGLSIPCFAVA-------------NMKDAVNHARRMATNGDAIVLSPGCASFD 358
KT ++ G + F A +MK+AV ++A GD ++LSP C+SFD
Sbjct: 372 KTKAVIFMGEAADRFETAAKEAGVKLIYRALSMKEAVGQGYKLAETGDIVLLSPACSSFD 431
Query: 359 EFRNFEHRGMVFQ 371
+ FE RG F+
Sbjct: 432 WYSCFEERGDDFK 444
>gi|350270589|ref|YP_004881897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillibacter
valericigenes Sjm18-20]
gi|348595431|dbj|BAK99391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillibacter
valericigenes Sjm18-20]
Length = 474
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 179/389 (46%), Gaps = 58/389 (14%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L ++ G + SE++ +V+P ++AVTG++GK+T T + + L G VGGN
Sbjct: 106 LLAAVERGSVITSEMEVFFEVVP--CTLIAVTGSDGKTTTTTLIAEFLKAAGKNVHVGGN 163
Query: 78 LGNPL-SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
+G+PL EA +P+ AV+E+SS+Q+ P +SV+ NL P+HL+ H
Sbjct: 164 IGHPLLCEAG-------EMQPE-DYAVLELSSFQLM--TMKCSPHISVITNLAPNHLDIH 213
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK---GH-----RFNLAWIGAF-PG 187
+ M Y K ++F+H + + + N E GH R + G F G
Sbjct: 214 RDMAEYVAAKENIFTHQSSEDIAVFNADNAITAEQASRALGHVRLFSRKSQPEEGVFLRG 273
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
+ + A E+ L+ ++ + G HN N A +V GL V A+
Sbjct: 274 DAVISRKNGAEREI--------LRTSDILLPGVHNVENYMAAIAAVDGL---VPDGAMRQ 322
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGY 307
HR+++V R ++GV + +DS T+ T GL K +++ GG K
Sbjct: 323 VARTFAGVEHRIELV-RTLRGVRYFNDSIGTSPSRTIAGLRSFP-EKVILIAGGYDKHIP 380
Query: 308 SGVLIWKTLVNNGLSIPCFAVAN-----------------------MKDAVNHARRMATN 344
VL + + + L I C A A+ K AV A + A +
Sbjct: 381 FDVLGPEIVDHVKLLILCGATADKIRECVVNAPNYQGGPEMVTIPDFKTAVETASQRAGD 440
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
GD ++LSP CA+FD+F+NF RG VF+++
Sbjct: 441 GDVVLLSPACAAFDQFKNFMERGKVFKQI 469
>gi|357236480|ref|ZP_09123823.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Streptococcus criceti HS-6]
gi|356884462|gb|EHI74662.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Streptococcus criceti HS-6]
Length = 451
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/389 (27%), Positives = 177/389 (45%), Gaps = 72/389 (18%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ G V +E++ A ++ I+ +TG+NGK+T T + +LN G A + GN
Sbjct: 89 VAKALRKGIPVYTEVELAYRI--SESPIIGITGSNGKTTTTTMIANVLNAAGQSALLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P SE A I V+E+SS+Q+ + + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASEVAMTAI-------DKDTLVMELSSFQL-MGVETFHPHMAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMV-------------------NTKLGLLPFGNQHLNEAIKGHRFN 178
T ++Y K HL M T+ +LPF Q E + G
Sbjct: 199 TFEDYVAAKWHLQGQMTADDYLILNFNQDLAKELASKTQATVLPFSTQ---EEVDGAYLK 255
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
++ F G ++ + + V G HN NA +AA++V L
Sbjct: 256 DGYL-CFKGEQV-------------------MAADTIGVPGSHNIENA-LAAIAVAKLS- 293
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
GVD + T+ HR+Q + + ++GV++ +DSK+TN+ AT L +K +++
Sbjct: 294 GVDNAVIAQTLSSFSGVKHRLQFLGQ-VKGVSFYNDSKSTNILATQKALSGFDNNKVILI 352
Query: 299 LGGQAKFGYSGVLI-----WKTLVNNGLS------------IPCFAVANMKDAVNHARRM 341
GG + LI K ++ G S +P ++KDA + A +
Sbjct: 353 AGGLDRGNEFDELIPDIVGLKKMIIIGQSAPRVKRAADKAGVPYLDAEDVKDAASIAFKE 412
Query: 342 ATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
A D I+LSP AS+D +++FE RG F
Sbjct: 413 AAPDDVILLSPANASWDMYKSFEVRGDDF 441
>gi|238754433|ref|ZP_04615788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
ATCC 29473]
gi|238707262|gb|EEP99624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
ATCC 29473]
Length = 438
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 168/353 (47%), Gaps = 48/353 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV VG+M G + VGGN+G P AL K + Q+ V+
Sbjct: 107 IIAITGSNGKSTVTMLVGEMAKAAGWQVGVGGNIGVP---------ALTLLKQENQLVVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + T + +LN+T DH +R+ ++ Y K ++ N K+ ++
Sbjct: 158 ELSSFQLETTSS-LQATAATILNVTEDHTDRYPFGLQQYRAAKLRIYD---NAKICVVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G G ++ + V V L MK+ GRHN
Sbjct: 213 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWLRVSGEKV---LNTREMKLTGRHN 269
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP---HRMQIVHRDIQGVTWVDDSKATN 279
Y NA A I +S+++ L T HR Q+V + GV W++DSKATN
Sbjct: 270 YTNALAALALADAAGI-----PRSSSLKALTTYAGLAHRFQLVFEN-HGVRWINDSKATN 323
Query: 280 LEATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA---------- 327
+ +T L L + +LLGG K +SG + + L + + + CF
Sbjct: 324 VGSTEAALDGLHIDGTLHLLLGGDGKSADFSG--LTRFLQGDKVQVYCFGRDGEQLAQLR 381
Query: 328 --VANMKDAVNHARRMAT----NGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
V+ + D + A ++ GD ++LSP CAS D+FRNFE RG F LA
Sbjct: 382 PEVSQLTDTMEQAVKLLAPTLKAGDMVLLSPACASLDQFRNFEQRGTEFARLA 434
>gi|222528782|ref|YP_002572664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Caldicellulosiruptor bescii DSM 6725]
gi|254766034|sp|B9MQ99.1|MURD_ANATD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|222455629|gb|ACM59891.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Caldicellulosiruptor bescii DSM 6725]
Length = 457
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 184/375 (49%), Gaps = 42/375 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 90 KKGIEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPF 148
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + + + V+E+SS+Q+E KYF P + +LN+TPDHL RH TM+NY
Sbjct: 149 -------IDTIETSSEDTIFVLEISSFQLETI-KYFKPKIGCILNITPDHLNRHLTMENY 200
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA----FPGVK-IDTEAKTA 197
K +F ++ +L + N + I + N+ F V ++ +
Sbjct: 201 TKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKGNVIVFSKTKTQFENVVFVENDVIYF 260
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE V+ + ++ + G+HN N A+AA+S L G++ + + ++ R H
Sbjct: 261 TFEGKTQEVMKKDEIF---IPGQHNLEN-ALAAISCT-LPFGIEKDTIEQVLKTFRGVEH 315
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------- 304
R++ V +I G+ + +DSK TN +A L + + +++ GG K
Sbjct: 316 RIEFVA-EINGIKFYNDSKGTNTDAAEKALNAFE-NPIILIAGGYDKGESFEKFASLVAK 373
Query: 305 -------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
G + I L G F V+ +K+AV + A NGD ++LSP CAS+
Sbjct: 374 KVKKVFLLGQTKQKIASELERIGYKNFEF-VSTLKEAVRKSFECAQNGDIVLLSPACASW 432
Query: 358 DEFRNFEHRGMVFQE 372
D F N+E RG +F+E
Sbjct: 433 DMFENYEQRGRMFKE 447
>gi|444424609|ref|ZP_21220064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
campbellii CAIM 519 = NBRC 15631]
gi|444242101|gb|ELU53617.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
campbellii CAIM 519 = NBRC 15631]
Length = 437
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 175/384 (45%), Gaps = 62/384 (16%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQAVLAKGTPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETTSSLKLK-AAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F N +L ++ N+ E L G+ D +A
Sbjct: 193 GMSDYRQAKLRIFD---NAELAVV---NRDDQETFPDTETPLVTFGS------DEQA--- 237
Query: 198 SFEVPAVGVVSQLQLH--------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+ + A G + L H +K++G+HN NA L VL L DV+ + ++
Sbjct: 238 -YGLEADGKRTWLLDHGQRVIASDELKLVGKHNLANA----LVVLALLKAADVD-YHKSL 291
Query: 250 EILRTPP---HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKF 305
L+T HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K
Sbjct: 292 NALKTYTGLTHRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK- 349
Query: 306 GYSGVLIWKTLVNNGLSIPCFAVA---------------NMKDAVNHARRMATNGDAIVL 350
G + L + CF M+D + GD ++L
Sbjct: 350 GADFTPLKPIFATLNLQLCCFGADGDEFMPLHESATRFDTMEDVIQQISSQLKTGDMVML 409
Query: 351 SPGCASFDEFRNFEHRGMVFQELA 374
SP CASFD+F NF RG F LA
Sbjct: 410 SPACASFDQFDNFMARGDAFAALA 433
>gi|167764158|ref|ZP_02436285.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
43183]
gi|167698274|gb|EDS14853.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
stercoris ATCC 43183]
Length = 444
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 186/378 (49%), Gaps = 46/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGISIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+ Y K + + + P + L + +K H + A + G E
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLKAHPYPFAAVKE-DGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G+ E + + +
Sbjct: 249 DGEVEINEP---IAFNMEQEELALRGTHNLYNSLAAGISA-NL-AGIRKEDIRKALSDFK 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGV-- 310
HR++ V ++GV +++DSKATN+ + L + K V++LGG+ K Y+ +
Sbjct: 304 GVEHRLEKVAT-VRGVQFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTEIED 361
Query: 311 --------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIVLSPGC 354
L++ L N + L +P V MKDAV+ A ++A G+ ++LSP C
Sbjct: 362 LVRSKCSALVYLGLHNEKLHGFFDRLGLPVADVQTGMKDAVDAAFKLARKGETVLLSPCC 421
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F+++E RG F++
Sbjct: 422 ASFDLFKSYEDRGDQFKK 439
>gi|333398686|ref|ZP_08480499.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
gelidum KCTC 3527]
Length = 449
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 169/343 (49%), Gaps = 37/343 (10%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++AVTG+NGK+T + + ML G + GN+G P+ E + A + +
Sbjct: 112 RLIAVTGSNGKTTTTSLIRDMLKSDGQKVTTAGNIGIPVCEVIKNLTADDT-------LL 164
Query: 104 VEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+E+SS+Q M P+ P ++++ N+ +HL+ H T +NY K L + +L +L
Sbjct: 165 LELSSFQLMGTPD--IRPDIALITNIFANHLDYHGTRENYVTAKFQLTKNQTTNQLLVLN 222
Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
Q ++ IK A + AF +K + +T S ++ G + L ++K++G HN
Sbjct: 223 ADGQDTDDFIKKTH---AKVVAFSRIKNEYTVRTDSVDLIISGN-HLMPLSDIKLVGPHN 278
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N VAA++V L GV A+ +E HR+Q V D GVT+ +DSKAT++EA
Sbjct: 279 LENI-VAAVTVAKL-AGVHDVAIRHVLETFGGVKHRLQHVFTD-NGVTFYNDSKATDIEA 335
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTL------------------VNNGLSIP 324
T T L H+ I L G G + + L V + P
Sbjct: 336 TQTALNSF--HQPTIWLAGGLDRGDDLMRLLPNLLHVKAVIAFGETQQKIVTVARAANKP 393
Query: 325 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
V +++ AV A ++A GD ++LSP AS+D++++FE RG
Sbjct: 394 VITVDDVEQAVPVAVKLAVTGDVVLLSPAAASWDQYKSFEERG 436
>gi|406600242|ref|YP_006745588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
gelidum JB7]
gi|406371777|gb|AFS40702.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
gelidum JB7]
Length = 448
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 169/343 (49%), Gaps = 37/343 (10%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++AVTG+NGK+T + + ML G + GN+G P+ E + A + +
Sbjct: 111 RLIAVTGSNGKTTTTSLIRDMLKSDGQKVTTAGNIGIPVCEVIKNLTADDT-------LL 163
Query: 104 VEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+E+SS+Q M P+ P ++++ N+ +HL+ H T +NY K L + +L +L
Sbjct: 164 LELSSFQLMGTPD--IRPDIALITNIFANHLDYHGTRENYVTAKFQLTKNQTTNQLLVLN 221
Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
Q ++ IK A + AF +K + +T S ++ G + L ++K++G HN
Sbjct: 222 ADGQDTDDFIKKTH---AKVVAFSRIKNEYTVRTDSVDLIISGN-HLMPLSDIKLVGPHN 277
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N VAA++V L GV A+ +E HR+Q V D GVT+ +DSKAT++EA
Sbjct: 278 LENI-VAAVTVAKL-AGVHDVAIRHVLETFGGVKHRLQHVFTD-NGVTFYNDSKATDIEA 334
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTL------------------VNNGLSIP 324
T T L H+ I L G G + + L V + P
Sbjct: 335 TQTALNSF--HQPTIWLAGGLDRGDDLMRLLPNLLHVKAVIAFGETQQKIVTVARAANKP 392
Query: 325 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
V +++ AV A ++A GD ++LSP AS+D++++FE RG
Sbjct: 393 VITVDDVEQAVPVAVKLAVTGDVVLLSPAAASWDQYKSFEERG 435
>gi|365133183|ref|ZP_09342567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Subdoligranulum sp.
4_3_54A2FAA]
gi|363615993|gb|EHL67447.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Subdoligranulum sp.
4_3_54A2FAA]
Length = 464
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 117/397 (29%), Positives = 183/397 (46%), Gaps = 58/397 (14%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
F+ L ++G V SE++ ++ P KI+AVTG++GK+T T + ++L G
Sbjct: 88 FEYYTPELVAAREAGAEVTSEMELFFRLCP--CKIVAVTGSDGKTTTTTLIAKILEAAGY 145
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+GGNLG L + + + VAVVE+SS+Q+ + P V+VV N+TP
Sbjct: 146 TVHLGGNLGRAL-------LPVVDAIAATDVAVVELSSFQLISMRQ--SPEVAVVTNVTP 196
Query: 131 DHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWI 182
+HL+ HK M+ Y K ++ + +L + N+ + +KG R ++
Sbjct: 197 NHLDHHKDMQEYIDAKRNILLYQKPDGKAVLGYENEVTRAMAADVKGSCRWFTRKSVVEN 256
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241
G F ++ D A G V+ + + ++ + G HN N A +V G+ +
Sbjct: 257 GGF--LRADGMLCMAEN-----GRVTPIVRREDVALRGEHNLENLLAAFTAVWGM---AE 306
Query: 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
V + + + HR++ V R + GV W +DS AT+ GL K +I+ GG
Sbjct: 307 VSTMAAVAKSFAGVEHRIEPV-RTLNGVQWFNDSIATSPTRVIAGLRAFD-QKLIIIAGG 364
Query: 302 QAKFGYSGVLIW-------KTLVNNGLSI----------PCFA--------VANMKDAVN 336
K G S + KTL+ G + P FA A+M AV
Sbjct: 365 SDK-GISFAPLAPELIAHVKTLILTGATAQKIEDAVKADPGFAESGLVILRAADMPQAVE 423
Query: 337 HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
AR A GD + LSP CASFD + NFE RG ++EL
Sbjct: 424 MARAAAQPGDIVSLSPACASFDSYPNFEARGRHYKEL 460
>gi|379009801|ref|YP_005267614.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Wigglesworthia
glossinidia endosymbiont of Glossina morsitans morsitans
(Yale colony)]
gi|375158325|gb|AFA41391.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Wigglesworthia
glossinidia endosymbiont of Glossina morsitans morsitans
(Yale colony)]
Length = 438
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 173/352 (49%), Gaps = 46/352 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV +G++ ++ GI +GGNLG P A + + +K Q+ ++
Sbjct: 107 IIAITGSNGKSTVTAMLGKIASYAGIPVGMGGNLGTP----ALNLL----NKKDCQLYII 158
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPF 163
EVSS+Q+E K VS +LN+T DH++R+ + Y K ++S+ +K+ L+
Sbjct: 159 EVSSFQLESTFK-LNTLVSSILNVTHDHMDRYPLGINQYRAYKLKIYSY---SKINLINL 214
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
+ L I N G + V +V L+ +MK+ G HNY
Sbjct: 215 -DDPLTWPIDNDNKNCVGFSKNSGTYQIKNIHNDMWLVANKQIV--LKCSHMKIRGYHNY 271
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
N A++AL++ + + A+ ++ HR Q+V + V W++DSK+TN+E+T
Sbjct: 272 MN-ALSALAIADI-VNFPRIAIVKALKNFSGLSHRFQLVLKR-NNVIWINDSKSTNVEST 328
Query: 284 CTGLMDLKGHKCV-ILLGGQAK--------------------FGYSGVLIWKTLVNNGLS 322
T LM + +LLGG +K FG L+ K N +S
Sbjct: 329 KTALMSTNTQGNIHLLLGGDSKSANLLTLSNILKRKKVKLYCFGKDAYLLSKIHTNAEVS 388
Query: 323 IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+K ++ ++ +GD ++LSP C+S D+F+NF+ RG F +LA
Sbjct: 389 ------CTLKQSIIKIKKNIHSGDVVLLSPACSSLDQFKNFKDRGNRFIQLA 434
>gi|121535920|ref|ZP_01667716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
carboxydivorans Nor1]
gi|121305491|gb|EAX46437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
carboxydivorans Nor1]
Length = 449
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 178/377 (47%), Gaps = 48/377 (12%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G VMSE++ A ++ P I+A+TGTNGK+T T VG+ML G E VGGN+G LS
Sbjct: 89 QGIPVMSEIEVAYRLCP--APIIAITGTNGKTTTTTLVGEMLKAAGREVVVGGNIGLALS 146
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ + + + V E+SS+Q+E F P ++ VLNLTPDHL+RH+++ NY
Sbjct: 147 QEV-------AGISEHGIVVAEISSFQLEGVVD-FRPRIAAVLNLTPDHLDRHRSLDNYK 198
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA----FPGVKIDTEAKTASF 199
K +F + +L + + + + + + G +++ E +
Sbjct: 199 AMKERIFRNQRPDDYLVLNYDDPLVRDMAERAPSQAVFFSRKARLSTGARLEDETIVMCW 258
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PP 256
E + + MK+ G HN NA A+ + + +LRT
Sbjct: 259 EGKTEAICP---VKEMKLFGAHNIENALAASCVAF-----LAGADAGAIGAVLRTFMGVE 310
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------ 304
HR++ V +I+GV + +DSKATN E+ L GH +++ GG+ K
Sbjct: 311 HRIEPVA-EIRGVRYYNDSKATNPESAIKALEAFDGH-IILIAGGRDKKTDLTEFMELAK 368
Query: 305 --------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G + ++ +G++ V +DAV A R+A ++LSP CAS
Sbjct: 369 QKVDHLILLGEAKERFYQAAAAHGVT-NIHLVDKFEDAVTLAYRLARPPQVVLLSPACAS 427
Query: 357 FDEFRNFEHRGMVFQEL 373
+D F N+E RG VF+EL
Sbjct: 428 YDMFNNYEERGRVFKEL 444
>gi|312622927|ref|YP_004024540.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
[Caldicellulosiruptor kronotskyensis 2002]
gi|312203394|gb|ADQ46721.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Caldicellulosiruptor kronotskyensis 2002]
Length = 458
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 185/374 (49%), Gaps = 40/374 (10%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 91 KKGIEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPF 149
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + + + V+E+SS+Q+E KYF P V +LN+TPDHL RH TM+NY
Sbjct: 150 -------IDTIETSSEDTIFVLEISSFQLETI-KYFKPKVGCILNITPDHLNRHLTMENY 201
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA----FPGVK-IDTEAKTA 197
K +F ++ +L + N + I + N+ F V ++ +
Sbjct: 202 TKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKGNVIVFSKTKTQFENVVFVENDVIYF 261
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE V+ + ++ + G+HN N A+AA+S L G++ + + ++ R H
Sbjct: 262 TFEGKTQEVMKKDEIF---IPGQHNLEN-ALAAISCT-LPFGIEKDTIEQVLKTFRGVEH 316
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLIWK 314
R++ V +I G+ + +DSK TN +A L + + +++ GG K F L+ K
Sbjct: 317 RIEFVA-EINGIKFYNDSKGTNTDAAEKALNAFE-NPIILIAGGYDKGESFEKFASLVAK 374
Query: 315 TLVN---------------NGLSIPCFA-VANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+ + F V+ +K+AV + A NGD ++LSP CAS+D
Sbjct: 375 KVKKVFLLGQTKQKIASELEKIGYKNFELVSTLKEAVRKSFECAQNGDIVLLSPACASWD 434
Query: 359 EFRNFEHRGMVFQE 372
F N+E RG +F+E
Sbjct: 435 MFENYEQRGRMFKE 448
>gi|170720128|ref|YP_001747816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
putida W619]
gi|169758131|gb|ACA71447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
W619]
Length = 448
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 113/361 (31%), Positives = 164/361 (45%), Gaps = 58/361 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAKAGKHVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 ---LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKV 217
LP + N AF ++D E K +FE A+ + +K+
Sbjct: 221 SRPLPVEGR----PCWSFGLNQPDFKAFGLREVDGE-KYLAFEFQAL-----MPARELKI 270
Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDD 274
G HN NA A +E LR HR Q V R GV W DD
Sbjct: 271 RGAHNQSNALAALALGH-----AAGLPFEPMLEALREFGGLAHRCQWV-RARSGVNWYDD 324
Query: 275 SKATNLEATCTGL----MDLKGHKCVILLGGQ-------------AKFGYSGVLIWKTLV 317
SKATN+ A + D+ G K V++ GG A+F + VL+ +
Sbjct: 325 SKATNVGAALAAIEGLGADIDG-KLVLIAGGDGKGADFAALREPVARFCRAVVLLGRDAD 383
Query: 318 NN----GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G ++P V + +AV +A GDA++LSP CAS D F+NFE RG +F +
Sbjct: 384 RLAEALGDAVPLVRVKTLDEAVQQCAELAVPGDAVLLSPACASLDMFKNFEERGRLFAQA 443
Query: 374 A 374
A
Sbjct: 444 A 444
>gi|398866244|ref|ZP_10621744.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM78]
gi|398241581|gb|EJN27231.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM78]
Length = 448
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 169/364 (46%), Gaps = 60/364 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLGDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +KV
Sbjct: 221 ---SRPLMGEGQPCWTFGLNKPDFKAF-GIREEDGEKYLAFEFQNL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ S + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLSALRNFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KIVLIAGGDGKGAEFKDLRDPVAANCRAVILMGRDSDKIGQ 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF---- 370
+ G ++P ++ +AV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRAGSLVEAVEQCRAAAQTGDVVLLSPACASFDMFKNYEDRGHQFVQAV 444
Query: 371 QELA 374
+ELA
Sbjct: 445 EELA 448
>gi|393772223|ref|ZP_10360680.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
sp. Rr 2-17]
gi|392722362|gb|EIZ79770.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
sp. Rr 2-17]
Length = 456
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 166/363 (45%), Gaps = 60/363 (16%)
Query: 39 IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPK 98
+PR +++ +TGTNGKST + V +L G+ A VGGN+G P+ A P+
Sbjct: 111 LPRH-RVVGITGTNGKSTTTSLVCHLLECAGVPARVGGNIGVPVLGA--------DPLPE 161
Query: 99 FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158
V V+E+SSYQ+++ C V+ +LN+TPDHL+R+ + + YA +K LF +
Sbjct: 162 GGVYVLELSSYQIDLTFSLDC-DVAALLNVTPDHLDRYGSFEAYAASKERLFEMQSRSHH 220
Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKV 217
+ G+ A + H PG V++ A A LQ +
Sbjct: 221 AVFGIGDNETRTAARMHAAQRD-----PGLVRLVDGADLA-----------LLQQEWPSL 264
Query: 218 MGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
G HN NAAV V L G+ + PHRM+ V + GV +++DSKA
Sbjct: 265 QGPHNLQNAAVGIAIVEAL--GIKKAQWKKALRTFSGLPHRMERVA-EANGVIYINDSKA 321
Query: 278 TNLEATCTGLMDL----KGH----KCVILLGG--------QAKFGYSGVLIWKTLVNNGL 321
TN + + +G + +LGG + K + V T+ + G
Sbjct: 322 TNPASAAPAIAAFPPIDRGSGPEPRLHWILGGLPKGDDLDECKPFFGNVAAAYTIGDAG- 380
Query: 322 SIPCFA-----------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
P FA M +A+ A +A GD ++LSP CASFD+FR+FE RG VF
Sbjct: 381 --PLFAEILAPYTVVHRSEMMAEAIRQAMAVARPGDIVMLSPACASFDQFRDFEARGQVF 438
Query: 371 QEL 373
++
Sbjct: 439 CQI 441
>gi|423346169|ref|ZP_17323857.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
merdae CL03T12C32]
gi|409220967|gb|EKN13920.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides
merdae CL03T12C32]
Length = 453
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 109/382 (28%), Positives = 185/382 (48%), Gaps = 42/382 (10%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G ++SE++FA + K++ +TG+NGK+T +L G++A
Sbjct: 84 KAPIIKKLKEKGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTMLTYHILRQAGVDAG 141
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+ GN+GN L AL ++ V V+E+SS+Q++ N Y F ++++LN+TPDH
Sbjct: 142 LAGNVGNSL--------ALQVAEDPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDH 191
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----- 186
L+ + M+NY K + + + + + I R A + F
Sbjct: 192 LDCYNYEMQNYVDAKFRIIRNQTAEDAFIFWNDDPIIAREI-AKRHPQATLYPFAETHEA 250
Query: 187 GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
GVK TE K E + L + + G HN +N+ + ++ +DI E L
Sbjct: 251 GVKGYTEDKKIIIETSNGTFTMEEDL--LALSGTHNLYNSLASGIASKLVDIHD--ENLR 306
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
+++ HR++ V R ++GV +++DSKATN+ + L + +IL G
Sbjct: 307 ASLSDFTGVEHRLEKVAR-VRGVDFINDSKATNVNSCWYALQSMTTPLVLILGGTDKGND 365
Query: 307 YSGV----------LIWKTLVNNGL------SIPCFAVA-NMKDAVNHARRMATNGDAIV 349
YS + LI+ + N L +P A +M++AV A ++A GD ++
Sbjct: 366 YSEIEELVKKKVHALIFLGVDNTKLHGFFDGKVPVIEDARSMEEAVAKAYKLAEKGDTVL 425
Query: 350 LSPGCASFDEFRNFEHRGMVFQ 371
LSP CASFD F+++E RG F+
Sbjct: 426 LSPCCASFDLFKSYEDRGDQFK 447
>gi|442804952|ref|YP_007373101.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442740802|gb|AGC68491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 462
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 169/386 (43%), Gaps = 58/386 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L +G + SE++ +V P K AVTG++GK+T T + +ML G F+GGN+G P
Sbjct: 97 LANGAELTSEMEVFMEVCP--AKTYAVTGSDGKTTTTTLIYEMLKQEGYRCFLGGNIGTP 154
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
L I V+E+SS+Q M + N P V+V+ N+TP+HL+ HK+M+
Sbjct: 155 L-------IDRIEEIDGDDRVVLELSSFQLMTMKN---SPNVAVITNITPNHLDVHKSME 204
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF-PGVKID 191
Y K ++F + + +L + N I L GAF G +I
Sbjct: 205 EYIDAKKNIFRYQTESDRVVLNYDNAITRSFIPEVNGKLLLFSIKEECTSGAFLKGNRIF 264
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
E+ L + +K+ G HN N A +V+ V E++ +
Sbjct: 265 YREDNTETEI--------LPIEEIKLPGMHNVENCLAAISAVMP---EVSRESIIHVAKT 313
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG-- 309
HR++ V R + GV++ +DS ++ T L K +I G K Y
Sbjct: 314 FSGVEHRIEFV-RTVNGVSFYNDSIGSSPTRTAATLKSFKDRVILIAGGYDKKLSYDELA 372
Query: 310 ----------VLIWKTL------------VNNGLSIPCFAVANMKDAVNHARRMATNGDA 347
VL+ T N +P V NM++AVN A +A +GD
Sbjct: 373 ETIHAKVKCMVLMGDTADKIETAYRNFARKENIEPVPVIRVKNMEEAVNAAYGIARSGDI 432
Query: 348 IVLSPGCASFDEFRNFEHRGMVFQEL 373
+VLSP ASFD + NF RG F+E+
Sbjct: 433 VVLSPASASFDMYANFMERGNHFKEI 458
>gi|330446841|ref|ZP_08310492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491032|dbj|GAA04989.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 446
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 192/406 (47%), Gaps = 69/406 (16%)
Query: 5 WLFLLEFQLKATGLACLL-------QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + G+A ++G ++ +++ A+ + + ++A+TG+NGKSTV
Sbjct: 65 WLLSADMIIASPGIALATPELVLAAEAGVEIIGDIELFAREVDK--PVVAITGSNGKSTV 122
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
+ VG+M GI+ VGGN+G AA +A + Q+ V+E+SS+Q+E +
Sbjct: 123 TSLVGEMAKEAGIDVGVGGNIGF----AALDMLA-----QQHQLYVLELSSFQLETTSSL 173
Query: 118 FCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR 176
T +V LNL+ DH++R+ + Y+ K +F H KL + F L A K +
Sbjct: 174 EL-TAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDH---AKLAV--FNRDDL--ATKPTQ 225
Query: 177 FNLAWIGAFPGVKIDTEA----KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232
F+ GA D +A E V + + + ++ ++GRHN N A
Sbjct: 226 FS----GAMTSFGFDEQAYGIVSVDGKEWLVVNGEAVMAVADIALVGRHNVANCLAALAL 281
Query: 233 VLGLDIGVDVEALNSTIEILRTPPHRMQI-VHRDIQGVTWVDDSKATNLEATCTGL--MD 289
GV +A ++ HR Q+ V+R GV WV+DSKATNL +T L +
Sbjct: 282 ADA--AGVPRDASCRAMQHYTGLAHRCQLAVNR--HGVRWVNDSKATNLASTLAALNGLQ 337
Query: 290 LKGHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVA 329
L+G K +L+GG +K FG L + + NN +S V
Sbjct: 338 LEG-KLHLLMGGDSKGAEFSELKPVLADLNVQLYSFGRDRHL-FDDVTNNVIS-----VE 390
Query: 330 NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 375
M +A+ R +GD ++LSP CAS+D+F NF RG F E A
Sbjct: 391 TMSEAMEQVSRTVQSGDMVLLSPACASWDQFANFMARGDAFVEQAI 436
>gi|390954610|ref|YP_006418368.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aequorivita
sublithincola DSM 14238]
gi|390420596|gb|AFL81353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aequorivita
sublithincola DSM 14238]
Length = 445
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 184/386 (47%), Gaps = 48/386 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G +V+SE++FAA+ +I + +TG+NGK+T + ++L + G+
Sbjct: 76 KAPIVKKLHEKGVKVISEIEFAAKFTKATI--VGITGSNGKTTTASLTYELLKYGGLNVA 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+G +E S+ K++ V+E+SS+Q++ + F P ++V+ NL+PDHL
Sbjct: 134 LGGNIGKSFAEQV--------SEEKYENFVLELSSFQLD-GIETFSPHIAVLTNLSPDHL 184
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
+R+ +NY +K + M T + + E IK N P +
Sbjct: 185 DRYDYKYENYIASKFRI--TMNQTSQDYFIYDADDV-EIIKWLSQNPIKAQPLP-FSVKK 240
Query: 193 EAKTASFEVPAVGVVS------QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
E +F+ ++ + + + + G HN NA A S + + + + +
Sbjct: 241 ELNQGAFKRNNEIIIKINNKEFNMPIATIGIQGEHNVKNAMAA--STIATLLRIRKQTIR 298
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
++E + HR++ V + I V +++DSKATN+ AT L ++ I+ G
Sbjct: 299 ESLEGFQGVEHRLEKVLK-IHNVMYINDSKATNVNATYFALDSMENPTVWIVGGVDKGND 357
Query: 307 YSGVLIWKTLVNNGL-SIPCFAVANMKD-------------------AVNHARRMATNGD 346
YS +L LVN + +I C V N K AV A ++ N +
Sbjct: 358 YSELL---PLVNEKVKAIICLGVDNQKIINAFGNVVETIIETDSMAMAVQVAYKLVENNN 414
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQE 372
++LSP CASFD F N+E RG F+E
Sbjct: 415 TVLLSPACASFDLFENYEDRGRQFKE 440
>gi|291544563|emb|CBL17672.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
champanellensis 18P13]
Length = 462
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 167/385 (43%), Gaps = 46/385 (11%)
Query: 17 GLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
L + G + SE++ + P +I VTG++GK+T T + +ML G + GG
Sbjct: 92 ALTAARKQGVIITSEMETFFDLCP--CRIYGVTGSDGKTTTTTLISEMLAKTGRRVYKGG 149
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+G L + L + + AVVE+SS+Q+ + P V+V+ N++P+HL+ H
Sbjct: 150 NIGKAL-------LPLIETIREEDAAVVELSSFQLISMRR--SPDVAVITNISPNHLDVH 200
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI----GAFPGVKIDT 192
TM+ Y K +L +H +L N + R L W G +D
Sbjct: 201 GTMEEYIGCKVNLIAHQNAYSKTVLNLDNAQTAALAEQVRGRLLWFTRQQKPERGTFLDA 260
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
E E + ++ ++++ G HN N A +V G V E + +
Sbjct: 261 EGWLCYAEAGKTQRI--VRAEDIRIPGLHNVENYLAAIAAVWG---EVPAETIVEVAKTF 315
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
HR++ V R++ GV W +DS AT+ GL + +++ GG K
Sbjct: 316 GGVEHRIEFV-RELDGVKWYNDSIATSPTRVLAGLRSF-NQRLIVIAGGYDKKIPFEPMA 373
Query: 305 ------------FGYSGVLIWKTLVNNGLSIPC----FAVANMKDAVNHARRMATNGDAI 348
G + I K + + P A+M++AV A+ +A GD +
Sbjct: 374 ETVNQRVKILILMGVTAPKIEKAVTEDPSYDPAKLQIVHAASMEEAVQKAKELAQPGDIV 433
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
LSP CASFD + NFE RG F+ L
Sbjct: 434 TLSPACASFDLYPNFEARGQHFKNL 458
>gi|386820093|ref|ZP_10107309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Joostella marina
DSM 19592]
gi|386425199|gb|EIJ39029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Joostella marina
DSM 19592]
Length = 444
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 184/378 (48%), Gaps = 46/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L++ G V+SE++FA+ + ++ +TG+NGK+T +L G+ + GN+G+
Sbjct: 82 LVELGISVISEIEFAS--LYTDATLIGITGSNGKTTTTMLTNHILKSEGLNVGMAGNIGD 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139
+F + +K + V+E+SS+Q++ K F P ++++ N+TPDHL+R+
Sbjct: 140 -----SFAQMVAEQTKDFY---VLEISSFQLDGIKK-FAPNIAIITNITPDHLDRYDYKF 190
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+NY +K + + + ++ + + +K H I P + E +F
Sbjct: 191 ENYIASKFRIAMNQTEKDYLIYDADDEVIEDWLKKHPIKSKLI---P-FSVQKELGYGAF 246
Query: 200 EVPAVGVVS------QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
+++ ++ + + G+HN NA +AA +V L + + + ++E +
Sbjct: 247 LKEDKIIINLDKQHLEMATDTLALEGKHNTKNA-MAASTVAQL-LKIRKATIRESLENFQ 304
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW 313
HR++ V + IQ V +++DSKATN+ AT L +K V ++GGQ K G + +
Sbjct: 305 GASHRLENVLK-IQNVQYINDSKATNVNATFYALDSMK-TPTVWIVGGQDK-GNDYLSLM 361
Query: 314 KTLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGC 354
+ +I C + N M DAV ++ +A GD ++LSP C
Sbjct: 362 PLVREKVKAIVCLGLDNAKIIEVFGGVVDFIVETTSMADAVKISKEVAEKGDTVLLSPAC 421
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F N+E RG F+E
Sbjct: 422 ASFDLFTNYEDRGNQFKE 439
>gi|148985270|ref|ZP_01818493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP3-BS71]
gi|387757134|ref|YP_006064113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae OXC141]
gi|418231770|ref|ZP_12858358.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07228]
gi|418236068|ref|ZP_12862637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19690]
gi|419479539|ref|ZP_14019347.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19101]
gi|419499230|ref|ZP_14038929.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47597]
gi|147922468|gb|EDK73587.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP3-BS71]
gi|301799723|emb|CBW32288.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae OXC141]
gi|353888076|gb|EHE67852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07228]
gi|353893997|gb|EHE73742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19690]
gi|379573193|gb|EHZ38149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19101]
gi|379602284|gb|EHZ67055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47597]
gi|429317565|emb|CCP37349.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPN034156]
gi|429319107|emb|CCP32342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPN034183]
gi|429320922|emb|CCP34316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPN994039]
gi|429322742|emb|CCP30357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPN994038]
Length = 446
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 170/366 (46%), Gaps = 38/366 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + + G ++ EV
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLTSKTEATVVPFSTLEKVDGAYLEDGQLYFRGEV 261
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 262 -------VMAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 312
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 313 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 371
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 372 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 431
Query: 365 HRGMVF 370
RG +F
Sbjct: 432 VRGDLF 437
>gi|404378086|ref|ZP_10983185.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Simonsiella
muelleri ATCC 29453]
gi|294483950|gb|EFG31633.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Simonsiella
muelleri ATCC 29453]
Length = 443
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 174/369 (47%), Gaps = 40/369 (10%)
Query: 23 QSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G +V+ ++ A ++ +S KI+A+TG+NGK+T + VG + G++ V GN+G P
Sbjct: 87 ERGGKVIGDVAILADLLKNQSDKIIAITGSNGKTTTTSLVGYLCEQSGLDTVVAGNIGMP 146
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EA L V V+E+SS+Q+E + Y + LN++ DHL+R+ + +
Sbjct: 147 VLEA-----WLVRGGKSADVWVLELSSFQLETTD-YLDADAATCLNISEDHLDRYDDLLD 200
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA TK +F N K + + A+K + + + ++ + S +
Sbjct: 201 YARTKDMIF----NGKAIQVLNADDAFCCAMKRENRPIHYFSLSQSIDYYLDSVSGSLKH 256
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
++ Q ++ + G HN N +AAL+ L +G+ L I + + PHR++
Sbjct: 257 QGADLMPQT---DIPLQGSHNVAN-VLAALA-LCESVGLARADLLKYIRVFKGLPHRVEK 311
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V GV ++DDSK TN+ AT ++ L K ++ GG K
Sbjct: 312 VGEK-NGVIFIDDSKGTNVGATVAAIVGLP-EKIWLIAGGMGKGQDFTPLRGVLRGKVGA 369
Query: 305 ---FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
G I + L N G+ + + +AV A A +GD ++LSP CASFD F+
Sbjct: 370 VFLIGVDAPKIARDLDNCGVDL--IFCDTLPEAVQRAYSQAKSGDIVLLSPACASFDMFK 427
Query: 362 NFEHRGMVF 370
+ HR VF
Sbjct: 428 GYAHRSEVF 436
>gi|238784570|ref|ZP_04628577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
bercovieri ATCC 43970]
gi|238714536|gb|EEQ06541.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
bercovieri ATCC 43970]
Length = 438
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 169/352 (48%), Gaps = 42/352 (11%)
Query: 43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVA 102
+ ++A+TG+NGKSTV T VG+M G + VGGN+G P AL K + Q+
Sbjct: 105 VPVVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVP---------ALTLLKQENQLV 155
Query: 103 VVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLL 161
V+E+SS+Q+E + + + +LN+T DH +R+ ++ Y K ++ N K+ ++
Sbjct: 156 VLELSSFQLETTSS-LRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYE---NAKVCVV 211
Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ L ++G G G ++ + V V L MK+ GR
Sbjct: 212 N-ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWLRVRGEKV---LNTREMKLTGR 267
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HNY NA A +G+ + + + PHR Q+V GV W++DSKATN+
Sbjct: 268 HNYTNALAALALA--DAVGIPRSSSLTALTTFTGLPHRFQLVFEH-NGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA----------- 327
+T L L+ + +LLGG K +SG + + L + + I CF
Sbjct: 325 GSTEAALDGLQVDGTLHLLLGGDGKSADFSG--LTRFLQGDHIKIYCFGRDGDELAELRP 382
Query: 328 -VANMKDAVNHARRMATN----GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
V+ + + + A + + GD ++LSP CAS D+FR+FE RG F LA
Sbjct: 383 EVSQLTETMEQAMVLLSKSLAPGDMVLLSPACASLDQFRSFEQRGDEFARLA 434
>gi|414157064|ref|ZP_11413364.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
F0442]
gi|410868380|gb|EKS16345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
F0442]
Length = 449
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 179/370 (48%), Gaps = 42/370 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A V I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLV--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQGGLLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + +V V+E+SS+Q+ + + F P ++V+ NL P H++ H + ++
Sbjct: 151 ASQVA-------QTATEKEVLVMELSSFQL-MGIEAFHPEIAVITNLMPTHIDYHGSFEH 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +L +M + +L F NQ L + + K + + G + E
Sbjct: 203 YVAAKWNLQKNMTEKDVIVLNF-NQDLAKELATKTKARVLPFSTVEKVDGAYL--EDGLL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F+ V ++ + V G HN N A+A ++V + GV+ E + T+ H
Sbjct: 260 KFKGEVV-----MRADEIGVPGSHNVEN-ALATIAVAKVR-GVENEVIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI----- 312
R+Q V +IQGV + +DSK+TN AT L K +++ GG + L+
Sbjct: 313 RLQYVD-EIQGVKFYNDSKSTNSLATQKALSGFDNSKVILIAGGLDRGNEFDDLVPHIAG 371
Query: 313 WKTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
K +V G S +P A++ DA A +A+ GD ++LSP AS+D +
Sbjct: 372 LKEMVILGESAPRVKRAADKAGVPYVDAADVADATKKAFELASPGDVVLLSPANASWDMY 431
Query: 361 RNFEHRGMVF 370
NFE RG F
Sbjct: 432 PNFEVRGDEF 441
>gi|59712810|ref|YP_205586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
fischeri ES114]
gi|59480911|gb|AAW86698.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Vibrio fischeri
ES114]
Length = 404
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 182/379 (48%), Gaps = 60/379 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G +++ +++ A + + ++A+TG+NGKSTV G+M G++ VGGN+G
Sbjct: 53 IDKGIKIVGDIELFAWAV--NAPVIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG-- 108
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL + ++ V+E+SS+Q+E + + LNL+ DH++R++ M +
Sbjct: 109 -------FAALDLLEQDAELYVLELSSFQLETTSTLKL-KAAAFLNLSEDHMDRYQGMAD 160
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQH----LNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +F H ++ ++ ++ + + +K F+ G I+ AK
Sbjct: 161 YRQAKLRIFEH---AEVCIVNRDDKQTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKN- 216
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP 255
V L + + ++G+HN N+ A+A L G++ L++T++ LRT
Sbjct: 217 --------TVPLLAANELGLVGKHNIANSLVAIALLDAAGIN-------LDATLDTLRTY 261
Query: 256 ---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHKCVILLGGQAKFGYSGV 310
HR Q+V D G+ WV+DSKATN+ +T L + L+G K +L+GG K G
Sbjct: 262 NGLTHRCQVV-ADNNGIRWVNDSKATNVASTLAALSGLQLEG-KLHLLVGGVGK-GADFS 318
Query: 311 LIWKTLVNNGLSIPCFA---------------VANMKDAVNHARRMATNGDAIVLSPGCA 355
+ L + L + CF M +A+ GD ++LSP CA
Sbjct: 319 ELSPALHDLNLMMYCFGEDGDQFVSLDPRSLLCETMNEAIATLYPTLNKGDMVMLSPACA 378
Query: 356 SFDEFRNFEHRGMVFQELA 374
SFD++ NF RG F +LA
Sbjct: 379 SFDQYANFMARGDAFTQLA 397
>gi|357975767|ref|ZP_09139738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
KC8]
Length = 427
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 156/347 (44%), Gaps = 55/347 (15%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K++ +TGTNGKST V +L+ G+ A +GGN+G P+ P+ V V
Sbjct: 110 KVVGITGTNGKSTTTALVRHILDTAGVPALMGGNIGLPILSR--------DPLPEGGVYV 161
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SSYQ+++ C V+V+LN+TPDHL+R+ + YA +K LF+ ++ ++ +
Sbjct: 162 LELSSYQIDLTYSLDC-DVAVLLNITPDHLDRYDGFEGYAASKARLFAMQGPGRVAVVDY 220
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
+ HR V D E F VV Q + G HN
Sbjct: 221 AAE------MAHR-----------VLDDAEDPMIQF---ISDVVIGDQAAWPALQGPHNA 260
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
N AVA L GV A+ + PHRM+ V GV +V+DSKATN +T
Sbjct: 261 QNVAVATAVARAL--GVGEAAIEQGLRTYPGLPHRMERVAEK-GGVLFVNDSKATNATST 317
Query: 284 CTGLMDLKGHKCVILLGGQAK-------------------FGYSGVLIWKTLVNNGLSIP 324
L K +LGG K G +G + + L + G P
Sbjct: 318 APALAAYP--KIHWILGGLPKTDELDACAPHYAHVVAAYVIGDAGPMFARILRDAGK--P 373
Query: 325 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
+ AV A A GD ++LSP CASFD+FR+FE RG F+
Sbjct: 374 VTESGTLDQAVRDAAAAAKPGDVVMLSPACASFDQFRDFEARGDAFR 420
>gi|329954172|ref|ZP_08295267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
clarus YIT 12056]
gi|328528149|gb|EGF55129.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
clarus YIT 12056]
Length = 444
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 185/379 (48%), Gaps = 48/379 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGISIISEIEFAGRYT--NAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TE 193
M+ Y K + + + + + ++ H A + F VK D E
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLK-AHLYPFAAVKEDGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G HN +N+ A +S L G+ E + +
Sbjct: 249 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISANLA---GIRKEDIRKALSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV- 310
+ HR++ V ++G+ +++DSKATN+ + L + K V++LGG+ K Y+ +
Sbjct: 303 KGVEHRLEKVAT-VRGIQFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTEIE 360
Query: 311 ---------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLSPG 353
L++ L N L +P V MKDAV+ A ++A G+ ++LSP
Sbjct: 361 DLVRTKCSALVYLGLHNEKLHEFFDRFGLPVADVQTGMKDAVDAAFKLAQKGETVLLSPC 420
Query: 354 CASFDEFRNFEHRGMVFQE 372
CASFD F+++E RG F++
Sbjct: 421 CASFDLFKSYEDRGDQFKK 439
>gi|77166314|ref|YP_344839.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrosococcus
oceani ATCC 19707]
gi|122063251|sp|Q3J787.1|MURD_NITOC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|76884628|gb|ABA59309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
oceani ATCC 19707]
Length = 453
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 158/347 (45%), Gaps = 35/347 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++ +TG+NGKSTV + + M G + GGNLG P E KP + ++
Sbjct: 115 VIGITGSNGKSTVTSLLEAMARQAGRQVLAGGNLGTPALELL--------EKPVPDLYIL 166
Query: 105 EVSSYQMEIPNKYFCPTVSV-VLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E Y V+ VLN++PDH++R+ + Y K ++ T ++
Sbjct: 167 ELSSFQLE--TTYTLDAVAACVLNISPDHMDRYPDLDAYCQAKARIYR---GTGTMVINA 221
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
+ + ++ HR L + P V + A G L + + GRHN
Sbjct: 222 DDFRVASLVQPHRPCLRFTLGMPAVDEYGLQERAGETWLVRGHERLLSARRLPLAGRHNL 281
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
NA A G +G+ A+ S ++ PHR + + ++ GV W +DSK TN+ AT
Sbjct: 282 ANALAALAL--GEAVGLPRAAMLSALQAFSGLPHRCEWLA-EVNGVRWYNDSKGTNVGAT 338
Query: 284 CTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSI------------------PC 325
+ + +IL+ G G + K L+ ++ P
Sbjct: 339 VAAIEGIPCQGKLILIAGGVGKGADFSPLSKPLIQRARAVVLMGQDASRLEAVLASGPPL 398
Query: 326 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+ V +M +AV A +A +GD ++LSP CASFD + +FE RG F++
Sbjct: 399 YRVNSMDEAVVKANVLAQSGDCVLLSPACASFDMYADFEARGQAFRQ 445
>gi|323142004|ref|ZP_08076855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Phascolarctobacterium succinatutens YIT 12067]
gi|322413536|gb|EFY04404.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Phascolarctobacterium succinatutens YIT 12067]
Length = 466
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 112/372 (30%), Positives = 174/372 (46%), Gaps = 35/372 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q G V+SE++ ++ I A+TGTNGK+T T VG+ML L + VGGN+G L
Sbjct: 99 QRGLEVISEVELGYRLYGGHIA--AITGTNGKTTTTTIVGEMLKRLPEPSAVGGNIGLAL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
S+ S P+ E+SS+Q+E + FCP ++VVLNLTPDHLERH TM+ Y
Sbjct: 157 SKEV-------ESLPQDGWLAAELSSFQLEKVSS-FCPDIAVVLNLTPDHLERHHTMEAY 208
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++F ++ +L + + + + L + ++ + +F +
Sbjct: 209 GEAKKNIFRQQGEVQVTVLNYDDPIVRTWGAETKGRLCYFSRKEKLQQGIYMQDGNFIIS 268
Query: 203 AVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G + + + + G HN N V A G GV + + + R+ HR++
Sbjct: 269 WDGKQETVCNISELHLFGGHNEEN--VLAAIACGFFAGVSISDMADVLRNFRSIEHRIEY 326
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF---------------- 305
V I GV + +DSKATN ++T L K ++L GG K
Sbjct: 327 VAT-IDGVPYYNDSKATNTDSTIKALEAFKDGHIILLAGGHDKLTPLEPMMELVKEKTDA 385
Query: 306 ----GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
G + K V G+ A + +DAV+ A MA ++LSP C+SFD F+
Sbjct: 386 LILLGAAKERFNKAAVACGVQNIVLA-DSFEDAVSKAHSMAHKPQVVLLSPACSSFDMFK 444
Query: 362 NFEHRGMVFQEL 373
N+ RG F++L
Sbjct: 445 NYPERGNYFKKL 456
>gi|218289897|ref|ZP_03494087.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
acidocaldarius LAA1]
gi|218240037|gb|EED07223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
acidocaldarius LAA1]
Length = 458
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 182/381 (47%), Gaps = 47/381 (12%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+++ ++++++ A + R I A+TG+NGK+T T VG+ML G V GN
Sbjct: 94 IAELIKASHVIVTDVEIAYWLEER--PIYAITGSNGKTTTTTLVGEMLKASGYHPIVAGN 151
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P+ + + P + V+EVSS+Q+E F P + +LN P HL+ H
Sbjct: 152 IGTPVCD----VVDQPG-----DLLVLEVSSFQLE-GTHTFHPRGAALLNFYPAHLDYHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE-----AIKGHRFNLAWIGAFPGVKIDT 192
T + Y K LF++ + +L + + + A + F+L GV +
Sbjct: 202 TYEAYQQAKWKLFANQTPDDVAILNWDQALVRDRAGELAARVRGFSLEGAPFDEGVGVID 261
Query: 193 EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
A A V L + + + GRHN NAA AA L VEA+ +
Sbjct: 262 GALVA---VRGGERTPILPVDQVALPGRHNLQNAAAAAALALAAG--AHVEAVARVLATF 316
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS---- 308
+ HR++ V R++ GV + +DSKATN +A L + + V+ + G G S
Sbjct: 317 QGVEHRLEFV-REVAGVRYYNDSKATNPDAARQALKSFE--RDVVWIAGGLDRGISFDPL 373
Query: 309 ----------GVLIWKT-------LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 351
VL+ +T L G+S FA + M++AV A R+A GD ++LS
Sbjct: 374 LPDISGRVRAAVLLGETKEKLREVLARAGVSTCVFA-STMEEAVREASRIAEPGDVVLLS 432
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CAS+D F ++E RG +F+E
Sbjct: 433 PACASWDMFPSYEVRGSMFKE 453
>gi|42046|emb|CAA35611.1| unnamed protein product [Escherichia coli K-12]
Length = 438
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 170/369 (46%), Gaps = 80/369 (21%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G+ VGGN+G P AL + ++ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + T + +LN+T DH++R+ ++ Y K ++ + +VN
Sbjct: 158 ELSSFQLETTSSLQAVTAT-ILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDA 216
Query: 160 L-LPF--------------GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
L +P G+ HLN H+ W+ G K+
Sbjct: 217 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 256
Query: 205 GVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
L + MK+ G+HNY N A VA GL ++AL + + PHR ++V
Sbjct: 257 -----LNVKEMKLSGQHNYTNALARVALADAAGLPRASSLKALTTFTGL----PHRFEVV 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGL 321
+ GV W++DSKATN+ +T L L + +LLGG K L + L + +
Sbjct: 308 -LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLA-RYLNGDNV 365
Query: 322 SIPCFA------------VANMKDAVNHARRM----ATNGDAIVLSPGCASFDEFRNFEH 365
+ CF VA + + A R+ GD ++LSP CAS D+F+NFE
Sbjct: 366 RLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQ 425
Query: 366 RGMVFQELA 374
RG F LA
Sbjct: 426 RGNEFARLA 434
>gi|257439004|ref|ZP_05614759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Faecalibacterium prausnitzii A2-165]
gi|257198589|gb|EEU96873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Faecalibacterium prausnitzii A2-165]
Length = 467
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 173/385 (44%), Gaps = 55/385 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V SE++ P +I+AVTG++GK+T T + + G + +GGN+G
Sbjct: 100 MAAGTMVTSEVELFFDFCP--CEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAA 157
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L LP +P+ VAVVE+SS+Q+ + + P ++VV N+TP+HL+ HK M+
Sbjct: 158 L------LPMLPEVRPE-DVAVVELSSFQL--ISMHQSPKIAVVTNVTPNHLDHHKDMQE 208
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAFPGVKIDTE 193
Y K ++ + +L + N+ K + W GAF
Sbjct: 209 YIDAKRNILLYQNPPCRAVLGYENEISRSMQKDCKGRQVWFTRLHDTDNGAF------LR 262
Query: 194 AKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ + GVV+ L ++K+ G HN N AA +V G V VEA+
Sbjct: 263 KEDNMLCMAEDGVVTPFLAQKDIKLRGLHNIENLLAAAAAVWG---EVPVEAIQKVGSTF 319
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
HR++ V R + GV + +DS T+ T GL K +++ GG K
Sbjct: 320 TGVEHRIEPV-RTLDGVLYYNDSIGTSPTRTIAGLRSFD-QKVILIAGGYDKHIPYEPLA 377
Query: 305 ------------FGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAI 348
G +G I K L N ++P NM+ AV AR A GD I
Sbjct: 378 PEIVAHVKDLVLMGATGPRIEKALREDPGFNEAALPIQHADNMQHAVELARAAAKPGDII 437
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+LSP ASFD + NFE RG F+ +
Sbjct: 438 ILSPASASFDLYPNFEVRGREFKNI 462
>gi|227494646|ref|ZP_03924962.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
coleocanis DSM 15436]
gi|226831828|gb|EEH64211.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
coleocanis DSM 15436]
Length = 494
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 169/400 (42%), Gaps = 82/400 (20%)
Query: 28 VMSELDFAAQV---IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
V SE++ A Q+ + + IK LA+TGTNGK+T V VG +L G + V GN+G P+
Sbjct: 103 VWSEVELAWQIQHTLGKDIKWLAITGTNGKTTTVGLVGSILEAAGAKYAVVGNVGEPIVT 162
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
K +V VE+SS+Q+E + P +V LN+ DHL+ H +++NY
Sbjct: 163 TVL--------KADVEVLAVELSSFQLETTHT-LSPLAAVCLNVDADHLDWHGSVENYRD 213
Query: 145 TKCHLFSHMVNTKLG-LLPFGNQHLN------EAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
K ++ NT++G + ++ + E I+G R IG G ++
Sbjct: 214 AKARIYE---NTQVGCVYDVTDRTVENMVAGAEVIEGARA----IGYTLGSPAPSQ---- 262
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL--------------------- 236
+G+V +L + V RH+ A + G
Sbjct: 263 ------IGLVEKLLVDRAFVENRHHQAEAVAEISDIFGFASEHPSIALVKDTLAAIALTR 316
Query: 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV 296
GV EA+ + + ++ HR ++ + V W+DDSKATN A L V
Sbjct: 317 AYGVSGEAVAAGLRNFKSAKHRRAVIGKTAD-VVWIDDSKATNTHAAKASLAGFPPQSVV 375
Query: 297 ILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKD--- 333
+ GG K G + + L N IP V +D
Sbjct: 376 WIAGGDTKGQELHSLVADIKDCLRGVVVIGADPTPVVEALQTNAAEIPYVVVDGHEDMMF 435
Query: 334 -AVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
VN A ++ G+ +VL+P CAS+D+F N+ RG +F E
Sbjct: 436 SVVNEAVALSLPGNTVVLAPACASWDQFENYGQRGDLFAE 475
>gi|153835403|ref|ZP_01988070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
HY01]
gi|148868059|gb|EDL67234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
HY01]
Length = 437
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 174/391 (44%), Gaps = 76/391 (19%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQAVLAKGTPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQGADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F N +L ++ +Q FP DTE
Sbjct: 193 GMSDYRQAKLRIFD---NAELAVVNRDDQE----------------TFP----DTETPLV 229
Query: 198 SF--EVPAVGVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
+F + A G+ + + +K++G+HN N AL VL L DV
Sbjct: 230 TFGSDEQAYGLEADGNRTWLLDHGQRVIASDELKLVGKHNLAN----ALVVLALLKAADV 285
Query: 243 EALNSTIEILRTP---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVIL 298
+ + ++ L+T HR Q+V D +GV WV+DSKATN+ +T L L+ K +L
Sbjct: 286 D-YHKSLNALKTYTGLTHRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLL 343
Query: 299 LGGQAKFGYSGVLIWKTLVNNGLSIPCFAV---------------ANMKDAVNHARRMAT 343
+GG K G + L + CF M+D +
Sbjct: 344 VGGVGK-GADFTPLKPIFATLNLQLCCFGADGDEFMPLHESATRFDTMEDVIQQISSQLK 402
Query: 344 NGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
GD ++LSP CASFD+F NF RG F LA
Sbjct: 403 TGDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|62900655|sp|Q5E2P8.2|MURD_VIBF1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
Length = 440
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 182/379 (48%), Gaps = 60/379 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G +++ +++ A + + ++A+TG+NGKSTV G+M G++ VGGN+G
Sbjct: 89 IDKGIKIVGDIELFAWAV--NAPVIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG-- 144
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL + ++ V+E+SS+Q+E + + LNL+ DH++R++ M +
Sbjct: 145 -------FAALDLLEQDAELYVLELSSFQLETTSTLKLK-AAAFLNLSEDHMDRYQGMAD 196
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQH----LNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +F H ++ ++ ++ + + +K F+ G I+ AK
Sbjct: 197 YRQAKLRIFEH---AEVCIVNRDDKQTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKN- 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP 255
V L + + ++G+HN N+ A+A L G++ L++T++ LRT
Sbjct: 253 --------TVPLLAANELGLVGKHNIANSLVAIALLDAAGIN-------LDATLDTLRTY 297
Query: 256 ---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHKCVILLGGQAKFGYSGV 310
HR Q+V D G+ WV+DSKATN+ +T L + L+G K +L+GG K G
Sbjct: 298 NGLTHRCQVV-ADNNGIRWVNDSKATNVASTLAALSGLQLEG-KLHLLVGGVGK-GADFS 354
Query: 311 LIWKTLVNNGLSIPCFA---------------VANMKDAVNHARRMATNGDAIVLSPGCA 355
+ L + L + CF M +A+ GD ++LSP CA
Sbjct: 355 ELSPALHDLNLMMYCFGEDGDQFVSLDPRSLLCETMNEAIATLYPTLNKGDMVMLSPACA 414
Query: 356 SFDEFRNFEHRGMVFQELA 374
SFD++ NF RG F +LA
Sbjct: 415 SFDQYANFMARGDAFTQLA 433
>gi|397169231|ref|ZP_10492666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alishewanella
aestuarii B11]
gi|396089311|gb|EJI86886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alishewanella
aestuarii B11]
Length = 443
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 160/343 (46%), Gaps = 35/343 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV ML GI+A GN+G P+ +A ++P +V V+
Sbjct: 110 VVAITGSNGKSTVTRLTEAMLQQSGIKALAAGNIGLPVLDAL--------AEPSAEVYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + + LN++ DHL+R+ + +YA K ++ H + L +
Sbjct: 162 ELSSFQLETTDSLQL-VAAANLNVSADHLDRYNDLADYAAAKQRIYQH---SALAVYNAE 217
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
+ A G R L+ G I + V + L + + + G+HN
Sbjct: 218 DNLTLPATSGPRLGLSLQDTGSGYGIVQHQQQEYLLVAGAPL---LPVSELSLFGKHNQF 274
Query: 225 NAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATC 284
NA AA L G EA+ +T++ R HR ++V + GV WV+DSK TN+ AT
Sbjct: 275 NALAAAALA--LAAGASREAIATTLKTFRGLAHRCELVL-ERNGVRWVNDSKGTNIGATL 331
Query: 285 TGLMDLKGH---KCVILLGGQAKFGYSGVL------IWKTLVNNGLSIPCFA-------- 327
L L+ K +++ GG AK L + L+ G P A
Sbjct: 332 AALAGLRSSVKGKLILIAGGDAKGADLTELQPALQRDVQQLITLGQDGPALAALLPDSIQ 391
Query: 328 VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
V ++ AV A + GD ++LSP CAS D F+++ RG F
Sbjct: 392 VKTLQQAVKTAASLTKPGDMVLLSPACASLDMFKSYADRGEQF 434
>gi|124022231|ref|YP_001016538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. MIT 9303]
gi|123962517|gb|ABM77273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. MIT 9303]
Length = 460
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 178/384 (46%), Gaps = 44/384 (11%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G + E+ A + + + +A+TGTNGK+TV + +L G++A +GGN
Sbjct: 86 LTALRQRGIDIDGEMAVAWRSLSH-LPWIAITGTNGKTTVTHLLNHVLESNGLKAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ +E A + +P + V+E+SSYQ+E + P + + NLTPDHLERH
Sbjct: 145 VGHAAAEIALKWRQPNAQRPDW--LVMELSSYQIEAAPE-IAPRIGIWTNLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-PGVKIDTEAKT 196
T+ Y K L +++ + + L+ L W+ + PG T
Sbjct: 202 TLDAYRKIKRGLLE---RSEIRIFNGDDPDLSSQRSSWDKGL-WVSSEGPG----TANHR 253
Query: 197 ASFEVPAVGVVSQLQ-----LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A F + A G+V Q + + G+HN N + ++ G+ +A+ +++
Sbjct: 254 ADFWIDAEGLVRDPQGALFAASALAMPGQHNLQN--LLMVTAAARQTGLPAKAIEASLRS 311
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------- 304
PHR++ + IQ ++ +DSKATN +A C GL + V+L GGQ K
Sbjct: 312 FPGVPHRLEELGH-IQQMSVYNDSKATNYDAACVGLKAVPA-PAVVLAGGQTKQGDASGW 369
Query: 305 -------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA--IV 349
FG + + +G +N+ AV A + A ++
Sbjct: 370 LKQLDLKACAVILFGAGAAELNDLIETSGFRGELHCCSNLNAAVTLAIPLGLERQAACLL 429
Query: 350 LSPGCASFDEFRNFEHRGMVFQEL 373
LSP CASFD++++FE RG F+ L
Sbjct: 430 LSPACASFDQYQDFEARGEHFRSL 453
>gi|298156874|gb|EFH97964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 448
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 172/364 (47%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPSDAMLASLREFTGLEHRCQWL-REHGGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSALRAPVAEHCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++P V ++ AV H+ ++A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVPLVRVDTVQAAVEHSAKLAQRGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|452944671|ref|YP_007500836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hydrogenobaculum
sp. HO]
gi|452883089|gb|AGG15793.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hydrogenobaculum
sp. HO]
Length = 411
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 176/369 (47%), Gaps = 46/369 (12%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV-GGNLGN 80
++S K ++ E + A + + I+AVTGT+GKST V +++H +F GGN G
Sbjct: 65 IKSSKELIGETELAYRFY-KGKNIIAVTGTDGKSTTV----HLIHHF--TSFKEGGNFGT 117
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P SE I L + K + V+EVSS+Q + + F P V V LN + DHL+ H +++
Sbjct: 118 PFSE-----IILDNDK---EDVVLEVSSFQGKTLDT-FRPNVGVFLNFSKDHLDWHPSLE 168
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
+Y L+K +F + + +L + + G V D K F
Sbjct: 169 DYLLSKQKIFKNQTQEDILILNAQKPVCDTPSLAKKIFFGENGDLKVVGSDVYYKDELF- 227
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
+ + ++K G HN +N AVA S + +G+ +E + +E P R Q
Sbjct: 228 ------IENISHPSLK--GLHNLYNIAVA--SFVAFSMGISLEEIKKKLETFEALPFRYQ 277
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGVLIWK----- 314
+ + +G+ +DSK+T + A + L K +++ GG K G +S + +K
Sbjct: 278 YL-GNFEGIDIYNDSKSTTVNALTSALESTKA-PILLIAGGIDKGGDFSSIEAYKDKIKA 335
Query: 315 --------TLVNNGLS--IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
L+ + + + + + +++ A+ A+ A GD I+ SP CASFD F +++
Sbjct: 336 VFLYGKDKNLIKDQIEHFLKVYVLEDLESALLKAKEQARKGDTILFSPACASFDMFESYK 395
Query: 365 HRGMVFQEL 373
HRG VF EL
Sbjct: 396 HRGKVFTEL 404
>gi|254436097|ref|ZP_05049604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
oceani AFC27]
gi|207089208|gb|EDZ66480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
oceani AFC27]
Length = 463
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 158/347 (45%), Gaps = 35/347 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++ +TG+NGKSTV + + M G + GGNLG P E KP + ++
Sbjct: 125 VIGITGSNGKSTVTSLLEAMARQAGRQVLAGGNLGTPALELL--------EKPVPDLYIL 176
Query: 105 EVSSYQMEIPNKYFCPTVSV-VLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E Y V+ VLN++PDH++R+ + Y K ++ T ++
Sbjct: 177 ELSSFQLE--TTYTLDAVAACVLNISPDHMDRYPDLDAYCQAKARIYR---GTGTMVINA 231
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
+ + ++ HR L + P V + A G L + + GRHN
Sbjct: 232 DDFRVASLVQPHRPCLRFTLGMPAVDEYGLQERAGETWLVRGHERLLSARRLPLAGRHNL 291
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
NA A G +G+ A+ S ++ PHR + + ++ GV W +DSK TN+ AT
Sbjct: 292 ANALAALAL--GEAVGLPRAAMLSALQAFSGLPHRCEWLA-EVNGVRWYNDSKGTNVGAT 348
Query: 284 CTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSI------------------PC 325
+ + +IL+ G G + K L+ ++ P
Sbjct: 349 VAAIEGIPCQGKLILIAGGVGKGADFSPLSKPLIQRARAVVLMGQDASRLEAVLASGPPL 408
Query: 326 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+ V +M +AV A +A +GD ++LSP CASFD + +FE RG F++
Sbjct: 409 YRVNSMDEAVVKANVLAQSGDCVLLSPACASFDMYADFEARGQAFRQ 455
>gi|399032392|ref|ZP_10731861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium sp.
CF136]
gi|398069244|gb|EJL60611.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium sp.
CF136]
Length = 443
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 187/374 (50%), Gaps = 38/374 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+++G +V+SE++FA + ++ I +TG+NGK+T +L G+ +GGN+G
Sbjct: 81 LIEAGVKVISEIEFA-KPFTEALTI-GITGSNGKTTTTMLTYHLLKSAGLNVGMGGNIG- 137
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139
A ++ K+ V+E+SS+Q++ Y P ++++ N++PDHL+R++
Sbjct: 138 -------KSFAWQVAENKYDAYVLELSSFQLDGIIDY-KPDIAIITNISPDHLDRYEYKY 189
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+ Y +K + + + + +Q + E ++ H A + F K+ E + +
Sbjct: 190 QKYIDSKFRITMNQTESDYLIYDADDQAITEWLQ-HNTTKAKLIPFSLTKVFNEGASINN 248
Query: 200 EVPAVGVVSQ---LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ + + ++ + + G+HN NA +AA SV L + + + ++ +
Sbjct: 249 NKMEIQINQEEFTMETEYIALEGKHNMKNA-MAASSVAKL-MQIRNATIRESLSNFQGVE 306
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLIW 313
HR++ V + IQ V +++DSKATN+ A L D V ++GG K + L+
Sbjct: 307 HRLEKVLK-IQNVQYINDSKATNVNAAFFAL-DSMNVPTVWIVGGVDKGNDYNELMSLVR 364
Query: 314 KTL-------VNNGLSIPCFA--------VANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+ + ++N I F V NM DAV A+R+ GDA++LSP CASFD
Sbjct: 365 EKVKAIICLGIDNRKIIEAFGNVVDIMVEVNNMSDAVKTAQRLTEKGDAVLLSPACASFD 424
Query: 359 EFRNFEHRGMVFQE 372
F N+E RG F++
Sbjct: 425 LFENYEDRGKQFKQ 438
>gi|72382768|ref|YP_292123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus str. NATL2A]
gi|122063254|sp|Q46JA8.1|MURD_PROMT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|72002618|gb|AAZ58420.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
marinus str. NATL2A]
Length = 469
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 180/357 (50%), Gaps = 45/357 (12%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+ +TGTNGK+TV + +L + +GGN+G LS+ A + ++ + V+E
Sbjct: 121 VGITGTNGKTTVTNMLNHILKLNNLNTDMGGNVGKALSKIALEN--MKNNDQELDWLVLE 178
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
+SS+Q+E K PT+ + TPDHLERH M++Y K L + + + +
Sbjct: 179 LSSFQIEGSPK-VAPTIGIWTTFTPDHLERHNDMESYFKIKRSLLEK---SSIRIYNSDD 234
Query: 166 QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV--SQLQLHNMKVM---GR 220
Q+L+ K + W+G + ++ F + G + + QL + ++ G+
Sbjct: 235 QYLSSKRKELPKGI-WVGTN---QQSLYSQYQKFWIDQKGYIFEDKKQLFHSSILNIPGK 290
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN N +A + +IG+D ++ +I+ ++ PHR++ + ++ +++ +DSKATN
Sbjct: 291 HNLQNLLLAIAA--AREIGLDDSSIAKSIKSFKSIPHRLEYLG-NVNNLSFYNDSKATNF 347
Query: 281 EATCTGLMDLKGHKCVILLGG------------QAKFGYSGVLIWKTLVNN---GLSIPC 325
+++ T L + H ++L GG Q K +G++++ NN L I
Sbjct: 348 DSSITALKSVP-HPIILLAGGIQKKGDFMPWVKQIKQSTNGIVLFGLSANNLKEELLISS 406
Query: 326 F-----AVANMKDA----VNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ N+++A +N AR TN +I+LSP CASFD+++N+E RG F+ L
Sbjct: 407 YIGEIIVKKNLEEATIASINIARE--TNSRSILLSPACASFDQYKNYEERGDHFKNL 461
>gi|312794105|ref|YP_004027028.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181245|gb|ADQ41415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 458
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 183/374 (48%), Gaps = 40/374 (10%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 91 KKGIEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPF 149
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + + + V+E+SS+Q+E KYF P V +LN+TPDHL RH TM+NY
Sbjct: 150 -------IDTIETSSENTIFVLEISSFQLETI-KYFKPKVGCILNITPDHLNRHMTMENY 201
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA----FPG-VKIDTEAKTA 197
K +F ++ +L + N + I + N+ F V ++ +
Sbjct: 202 IKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKGNVIVFSKNKCQFKNMVFVEKDTIYF 261
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE ++ + ++ + G HN N A+AA+S L G++ + + ++ R H
Sbjct: 262 TFEGKTQEIMKKDEIF---IPGEHNLEN-ALAAISCT-LPFGIEKDTIEQVLKTFRGVEH 316
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---FGYSGVLIWK 314
R++ V +I G+ + +DSK TN +A L + +++ GG K F L+ K
Sbjct: 317 RIEFVA-EINGIKFYNDSKGTNTDAAEKALRAFES-PIILIAGGYDKGESFEKFASLVAK 374
Query: 315 TLVN---------------NGLSIPCFA-VANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+ + F V+ +K+AV + A NGD ++LSP CAS+D
Sbjct: 375 KVKKVFLLGQTKHKIASELEKIGYKNFELVSTLKEAVRKSFECAQNGDIVLLSPACASWD 434
Query: 359 EFRNFEHRGMVFQE 372
F N+E RG +F+E
Sbjct: 435 MFENYEQRGRMFKE 448
>gi|335049563|ref|ZP_08542553.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera sp.
UPII 199-6]
gi|333762823|gb|EGL40308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera sp.
UPII 199-6]
Length = 451
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 121/389 (31%), Positives = 183/389 (47%), Gaps = 65/389 (16%)
Query: 21 LLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
LLQ R V SE++ A +V ILAVTGTNGK+T T +G+M+ G + VGG
Sbjct: 84 LLQEAVRRRIPVWSEVEVACRVT--DAAILAVTGTNGKTTTTTLLGEMVKASGRQTAVGG 141
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N+G L++A + P VAV E+SS+Q+E+ + +V+LN+TPDHL+RH
Sbjct: 142 NIGVGLAQAV-------TDLPPQAVAVAELSSFQLELTSSLHAAG-AVILNITPDHLDRH 193
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
TM+ Y+ K +FS+ T +L + + + + + + +
Sbjct: 194 HTMEAYSAAKERIFSNQEATDTAVLNYDDDRVRNMQARRKGKVVFF-------------S 240
Query: 197 ASFEVPAVGVVSQLQL--------------HNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
EVP QL ++++ G HN N A L + I + V
Sbjct: 241 TQGEVPEGAFYKDHQLMLRHDGTDTLICRDSDLQLFGAHNIQNCLAAVLLATAVAIPLPV 300
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302
+ S ++ R HR++ V R +QGV + +DSK TN++A+ L GH +++ GG
Sbjct: 301 --IRSVLKRFRGVEHRLEKV-RVLQGVPYYNDSKGTNVDASIKALEAFSGH-LILIAGGH 356
Query: 303 AK------FGYSGVLIWKTLVNNGLSIPCFAVA--------------NMKDAVNHARRMA 342
K F TL+ G S FA A NM+ AV AR++A
Sbjct: 357 DKMTPLDAFMKLAARKVDTLILVGESADRFAAAAKKAGVRDIRNVGYNMEKAVMTARKLA 416
Query: 343 TNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
+VLSP C+SFD + N+E RG VF+
Sbjct: 417 RPPQQVVLSPACSSFDMYDNYEQRGRVFK 445
>gi|51595036|ref|YP_069227.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pseudotuberculosis IP 32953]
gi|186894042|ref|YP_001871154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pseudotuberculosis PB1/+]
gi|60390355|sp|Q66EK7.1|MURD_YERPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|51588318|emb|CAH19926.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia
pseudotuberculosis IP 32953]
gi|186697068|gb|ACC87697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
pseudotuberculosis PB1/+]
Length = 438
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 164/350 (46%), Gaps = 42/350 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV T VG+M G VGGN+G P AL K Q+ V+
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIGVP---------ALTLLKQDNQLTVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + + +LN+T DH +R+ ++ Y K ++ N K+ ++
Sbjct: 158 ELSSFQLETTHSLRA-SAATILNVTEDHTDRYPLGLQQYRAAKLRVYE---NAKVCIVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G G ++ + V V L MK+ GRHN
Sbjct: 213 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWLRVRGEKV---LNTREMKLSGRHN 269
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
Y NA A +G+ + + PHR Q+V + GV W++DSKATN+ +
Sbjct: 270 YTNALAALALAD--AVGIPRASSLKALTTFSGLPHRFQLV-LERHGVRWINDSKATNVGS 326
Query: 283 TCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA------------- 327
T L L+ + +LLGG K +SG + + L + + + CF
Sbjct: 327 TEAALDGLQVDGTLHLLLGGDGKSADFSG--LTRFLQGDRIKVYCFGRDGGQLAALRPDV 384
Query: 328 ---VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M A+ ++ GD ++LSP CAS D+FR+FEHRG F LA
Sbjct: 385 SQLTETMAQAMALVAKVVLPGDRVLLSPACASLDQFRSFEHRGNEFARLA 434
>gi|271502044|ref|YP_003335070.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
Ech586]
gi|270345599|gb|ACZ78364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
Ech586]
Length = 437
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 165/349 (47%), Gaps = 40/349 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VGQM + G VGGN+G P AL K + Q+ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGQMAHAAGWAVGVGGNIGVP---------ALELLKQESQLYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + +LN+T DH R+ ++ Y K ++ N K+ ++
Sbjct: 157 ELSSFQLETTHSLHA-AAATILNVTEDHTNRYPLGLQQYRAAKLRIYE---NAKVCIVN- 211
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G G ++ + V V L +K++G+HN
Sbjct: 212 ADDALTMPVRGADARCLSFGVDVGDYHLNRQQGETWLRVKGERV---LNTREIKLVGQHN 268
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
Y NA A +G+ + + + PHR Q+ + GV WV+DSKATN+ +
Sbjct: 269 YTNALAALALA--DAVGIPRSSALTALTTFTGLPHRFQL-SLERNGVRWVNDSKATNVGS 325
Query: 283 TCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA------------VA 329
T L L+ + +LLGG K L+ + L + + + CF +A
Sbjct: 326 TEAALSGLQVDGTLHLLLGGDGKSADFSPLL-RYLQGDRIRLYCFGRDGGQLAALRPEIA 384
Query: 330 NMKDAVNHARRMATN----GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
D + A R+ + GD ++LSP CAS D+FR+FE RG F LA
Sbjct: 385 QQTDTMEQAMRLIASRTQPGDMVLLSPACASLDQFRSFEQRGDEFARLA 433
>gi|380693288|ref|ZP_09858147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides faecis
MAJ27]
Length = 444
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 185/382 (48%), Gaps = 54/382 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++SE++F + K++ +TG+NGK+T + + + + + GN+G
Sbjct: 82 LKAQGTPIISEIEFTGRYT--DAKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ ++E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHL-NEAIKGHRFNLAWI---GAFPGVKI 190
M+NY K + + + P Q L +K H + A + GA V+
Sbjct: 190 MQNYIDAKFRITQNQTTDDAFIFWNDDPIIKQELAKHGLKAHLYPFAAMKEDGAIAYVE- 248
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
D E K + ++ + + G+HN +N+ A +S L G+ E + +
Sbjct: 249 DHEVKITE------PIAFNMEQEELALTGQHNLYNSLAAGISANLA---GITKENIRKAL 299
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYS 308
+ HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y+
Sbjct: 300 SDFKGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYT 357
Query: 309 GV----------LIWKTLVNNGL-------SIPCFAVAN-MKDAVNHARRMATNGDAIVL 350
+ L++ L N L +P V MKDAV A ++A G+ ++L
Sbjct: 358 EIEDLVREKCSALVYLGLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 417
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CASFD F+++E RG F++
Sbjct: 418 SPCCASFDLFKSYEDRGDQFKK 439
>gi|238797708|ref|ZP_04641203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
mollaretii ATCC 43969]
gi|238718460|gb|EEQ10281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
mollaretii ATCC 43969]
Length = 438
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 172/352 (48%), Gaps = 46/352 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P AL K + Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVP---------ALTLLKQENQLVVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + +LN+T DH +R+ ++ Y K ++ N K+ ++
Sbjct: 158 ELSSFQLETTTSLRA-SAATILNVTEDHTDRYPFGLQQYRAAKLRVYE---NAKVCVVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G G ++ + V V L MK+ GRHN
Sbjct: 213 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWLRVQGEKV---LNTREMKLTGRHN 269
Query: 223 YHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y N AA+A +G+ ++AL + + PHR Q+V GV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGIPRSSSLKALTTFTGL----PHRFQLVFEH-NGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA----------- 327
+T L L+ + +LLGG K +SG + + L + + + CF
Sbjct: 325 GSTEAALEGLQVDGTLHLLLGGDGKSADFSG--LTRFLQGDQIKVYCFGRDGEELAALRP 382
Query: 328 -VANMKDAVNHARRMATN----GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
V+ + + + A + + GD ++LSP CAS D+FR+FE RG F LA
Sbjct: 383 EVSQLTETMEQAMVLLSKNLAPGDMVLLSPACASLDQFRSFEQRGDEFARLA 434
>gi|157826844|ref|YP_001495908.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
bellii OSU 85-389]
gi|157802148|gb|ABV78871.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
bellii OSU 85-389]
Length = 450
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 177/365 (48%), Gaps = 56/365 (15%)
Query: 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
+ + +LAVTGTNGKST + +L+ G++ + GN+G P+ +A +SK +
Sbjct: 102 KGLNLLAVTGTNGKSTTTALISHILSDNGLDYPIAGNIGVPVLQA-------KASKGGY- 153
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
V+E+SS+Q+++ K F ++V+LN+TPDHL+RH+ M+ Y K +F M G+
Sbjct: 154 --VLELSSFQLDLV-KTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFDRMDKDSYGI 210
Query: 161 LPFGNQHLNEA---------IKGHRFNLAWIGAFPGVKIDTEAKTAS-FEVPAVGVVSQL 210
+ N + +E IK F++ I G+ I + T + FE + ++S
Sbjct: 211 INIDNDYCHEIFTNLQQKHHIKLIPFSVTKILE-KGISIVNDIITDNFFEHISFKLIS-- 267
Query: 211 QLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268
N + G HN N A+ A ++GL+ +E+++S + PHRMQ + +I
Sbjct: 268 ---NKSLQGIHNSENIAASYAVARIIGLEPVKIIESISS----FQGLPHRMQYL-GNIDD 319
Query: 269 VTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG---------------YSGVLIW 313
+ + +DSKATN A + L L GG AK G Y
Sbjct: 320 INFYNDSKATNAIAAVQSIKALDN--IYWLAGGIAKEGGIEEIKPYFSKIKKAYFYGQAK 377
Query: 314 KTLVNNGLSIPCFAVA-NMKDAVNHARRMATNGDA----IVLSPGCASFDEFRNFEHRGM 368
+ N I F + ++K A A + A + I+L+P C+S+D+F+NFE RG
Sbjct: 378 EMFANTAKDIIDFVICDDLKQAFELAYKDACKDNEKEKNILLAPCCSSYDQFKNFEERGE 437
Query: 369 VFQEL 373
+F L
Sbjct: 438 LFIRL 442
>gi|116328899|ref|YP_798619.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Hardjo-bovis str. L550]
gi|116330494|ref|YP_800212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Hardjo-bovis str. JB197]
gi|122281748|sp|Q04UG6.1|MURD_LEPBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|122283318|sp|Q04Z09.1|MURD_LEPBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|116121643|gb|ABJ79686.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Hardjo-bovis str. L550]
gi|116124183|gb|ABJ75454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Hardjo-bovis str. JB197]
Length = 462
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 169/385 (43%), Gaps = 91/385 (23%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ +TGT+GKST + V +L + GGNLG P + I+L AV
Sbjct: 103 KIIGITGTDGKSTTTSLVAHLLKKDFSDLKEGGNLGIPFTSFCKEPISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHL-------FSHMVNT 156
+E+SSYQ+E + VSV LNL PDHLERH+TM+NY K + S +V+
Sbjct: 154 LELSSYQLEDSSPLDL-NVSVFLNLAPDHLERHETMENYFRAKLKIADLQNPNHSLIVSE 212
Query: 157 KL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K+ LL FG +EAI +E +T+ F +
Sbjct: 213 KIREKILNSTSVQCKLLSFGRATTSEAILDES--------------SSEIRTSKF----I 254
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+S+ L G HN N A A L+ IG E++ + I PHR QI
Sbjct: 255 YDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQAQIPFFMGLPHRFQIAGE 307
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK---------FGYSGV---- 310
+G+++++DSK+TNL + G+ K + ++LGG+ K F G+
Sbjct: 308 K-RGISFINDSKSTNLHSMLAGMSAWKNLDRTCLILGGRPKQEDPKPLYDFLMRGIGCVV 366
Query: 311 ------LIWKTLVNNGLSIPCFAVANMKDAVN------------HARRMATNGDA----I 348
+W+ + N + F+V N+ +A R++ + +
Sbjct: 367 LIGEARSVWEKGIRNVIGEKLFSVENLDEAFKIFKKWNVISESPEIRKIRLSSEITISYF 426
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
V SP C SFD+++NFE RG F L
Sbjct: 427 VFSPACVSFDQYKNFEERGNHFLSL 451
>gi|189220257|ref|YP_001940897.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum
infernorum V4]
gi|189187115|gb|ACD84300.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methylacidiphilum
infernorum V4]
Length = 442
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 167/373 (44%), Gaps = 60/373 (16%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
++++S+ D P K + VTG+ GKST + + +L G +A++GGN+G P
Sbjct: 98 EKIVSQADIFLSFWPG--KTVGVTGSKGKSTTSSLIYHLLKEGGFKAYLGGNIGIP---- 151
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFC---PTVSVVLNLTPDHLERHKTMKNY 142
FH + K +AV+E+SSYQ+E +C P +++ LNL +HL H + + Y
Sbjct: 152 PFHLLPFADEK---AIAVLELSSYQLE-----YCKHSPAIALWLNLFHEHLNYHGSFEAY 203
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
A K H+ + G+Q L + PG+ + E K
Sbjct: 204 AQAKSHIGRFQSPKDYFIYDPGDQALELFLLSQE-------KMPGIPLPVEGKGR----- 251
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
SQ+ L + + GRHN NA AA + L +G+ EA++ + R PHR++ V
Sbjct: 252 -----SQVDLSRLGIPGRHNKKNALFAA--RVALLLGMPAEAISEALSSFRGLPHRLEYV 304
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------------ 304
+ G+++ +DS +T EAT G+ + + +I +GGQ +
Sbjct: 305 -ATVGGISYYNDSISTVPEATLAGIEAIPSVRTLI-VGGQDRGVDLGLFCARLCTVQELE 362
Query: 305 ----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
+G I L G F V ++++AV A R G + + SP S+ +
Sbjct: 363 TLILLPETGWRIGFLLKEMGFKKNLFLVKSLEEAVELAGRYTPKGYSCLFSPAAPSYHLY 422
Query: 361 RNFEHRGMVFQEL 373
NFE RG F+ L
Sbjct: 423 LNFEKRGEHFKSL 435
>gi|300173574|ref|YP_003772740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
gasicomitatum LMG 18811]
gi|333447883|ref|ZP_08482825.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc inhae
KCTC 3774]
gi|299887953|emb|CBL91921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
gasicomitatum LMG 18811]
Length = 448
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 169/346 (48%), Gaps = 43/346 (12%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+++AVTG+NGK+T + + ML G + GN+G P+ E A + +
Sbjct: 111 RLIAVTGSNGKTTTTSLIRDMLKSDGQKVTTAGNIGIPVCEVIKDLTADDT-------LL 163
Query: 104 VEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+E+SS+Q M P+ P ++++ N+ +HL+ H T +NY K L + + +L +L
Sbjct: 164 LELSSFQLMGTPD--IRPDIALITNIFANHLDYHGTRENYVAAKFQLTKNQTSNQLLVLN 221
Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ---LQLHNMKVMG 219
Q +E IK A + AF +K D +T + ++ ++S + L +K++G
Sbjct: 222 ADGQDTDEFIKKTH---AKVVAFSRIKNDYTVRTDNVDL----IISDNHLMPLSGIKLVG 274
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
HN N VAA++V L GV A+ +E HR+Q V D GV + +DSKAT+
Sbjct: 275 PHNLENI-VAAVTVAKL-AGVHDTAIRHVLETFGGVEHRLQHVLTD-NGVVFYNDSKATD 331
Query: 280 LEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTL------------------VNNGL 321
+EAT T L H+ I L G G + + L V
Sbjct: 332 IEATQTALNSF--HQPTIWLAGGLDRGDDLMRLLPNLSHVKAVIAFGETQQKIVAVARAA 389
Query: 322 SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
+ P V +++ AV A ++A GD ++LSP AS+D++++FE RG
Sbjct: 390 NKPVITVDDVEQAVPVAVKLAVTGDVVLLSPAAASWDQYKSFEERG 435
>gi|398847758|ref|ZP_10604646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM84]
gi|398251261|gb|EJN36530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM84]
Length = 448
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 172/365 (47%), Gaps = 66/365 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNLGTP---------ALDLLADDIELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 ---LPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP ++G N AF ++D E K +FE + +
Sbjct: 221 SRPLP---------VEGRPCWTFGLNAPDFKAFGLREVDGE-KHLAFEFQTL-----MPA 265
Query: 213 HNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
+K+ G HN N AA+A GL +EAL ++ HR Q V R+ GV
Sbjct: 266 RELKIRGAHNQSNALAALALGHAAGLPFAPMLEALREFAGLV----HRCQWV-RERNGVN 320
Query: 271 WVDDSKATNLEATCTGL----MDLKGHKCVILLGGQ-------------AKFGYSGVLIW 313
W DDSKATN+ A + D++G K V++ GG A+F + VL+
Sbjct: 321 WYDDSKATNVGAALAAIEGLGADIEG-KLVLIAGGDGKGADFAALREPVARFCRAVVLLG 379
Query: 314 KTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 369
+ G +P V + +AV +A GDA++LSP CAS D F+NFE RG +
Sbjct: 380 RDAERLAEALGDGVPQVRVKTLDEAVQQCAELAQPGDAVLLSPACASLDMFKNFEERGRL 439
Query: 370 FQELA 374
F + A
Sbjct: 440 FAQAA 444
>gi|406586882|ref|ZP_11061802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD1S]
gi|419814577|ref|ZP_14339353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD2S]
gi|404471639|gb|EKA16139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD2S]
gi|404473624|gb|EKA17955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD1S]
Length = 450
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 173/371 (46%), Gaps = 44/371 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTAGDFLVLNF-NQDLAKEL-ATKTQATVVPFSTQEKVDGAYLEDGQLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+AA++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALAAIAVAKLR-GVDNQTIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
+Q V +IQGV + +DSK+TN+ AT L K +++ GG +
Sbjct: 314 LQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G S + + G++ ++ DA A +AT GD ++LSP AS+D
Sbjct: 373 KKMVILGQSAERVKRAAEKAGVT--YVDATDIADATRKAYELATQGDVVLLSPANASWDM 430
Query: 360 FRNFEHRGMVF 370
+ NFE RG +F
Sbjct: 431 YANFEVRGDLF 441
>gi|398978390|ref|ZP_10687765.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM25]
gi|398137190|gb|EJM26256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM25]
Length = 448
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 164/356 (46%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +K+
Sbjct: 221 T---RPLMGEGQPCWTFGLTKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ + + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLAALRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGKGAEFKDLRDPVAAHCRAVILMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P + DAV R A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRATTLVDAVVQCRAAAQPGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|153947798|ref|YP_001402346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pseudotuberculosis IP 31758]
gi|152959293|gb|ABS46754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
pseudotuberculosis IP 31758]
Length = 438
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 164/350 (46%), Gaps = 42/350 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV T VG+M G VGGN+G P AL K Q+ V+
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIGVP---------ALTLLKQDNQLTVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + + +LN+T DH +R+ ++ Y K ++ N K+ ++
Sbjct: 158 ELSSFQLETTHSLRA-SAATILNVTEDHTDRYPLGLQQYRAAKLRVYE---NAKVCVVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G G ++ + V V L MK+ GRHN
Sbjct: 213 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWLRVRGEKV---LNTREMKLSGRHN 269
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
Y NA A +G+ + + PHR Q+V + GV W++DSKATN+ +
Sbjct: 270 YTNALAALALA--DAVGIPRASSLKALTTFSGLPHRFQLV-LERHGVRWINDSKATNVGS 326
Query: 283 TCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA------------- 327
T L L+ + +LLGG K +SG + + L + + + CF
Sbjct: 327 TEAALDGLQVDGTLHLLLGGDGKSADFSG--LTRFLQGDRIKVYCFGRDGGQLAALRPDV 384
Query: 328 ---VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M A+ ++ GD ++LSP CAS D+FR+FEHRG F LA
Sbjct: 385 SQLTETMAQAMALVAKVVLPGDRVLLSPACASLDQFRSFEHRGNEFARLA 434
>gi|410030909|ref|ZP_11280739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinilabilia sp.
AK2]
Length = 450
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 176/377 (46%), Gaps = 48/377 (12%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G V+ EL+FA + K++A+TGTNGK+T +L G++ + GN+G
Sbjct: 84 FEKGLPVIDELEFAFRF--SKGKVIAITGTNGKTTTALLTYHLLKKGGLDVGLAGNVGKS 141
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMK 140
A + V+EVSS+Q++ K+F P ++++ N+TPDHL+R+ +
Sbjct: 142 W---AGQLVG-----QDHDWWVLEVSSFQID-GFKHFKPCIAMLTNITPDHLDRYGYQLD 192
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF- 199
NY L+K LF +M + ++ + NE I F + +P V + T K +
Sbjct: 193 NYILSKMSLFQNMDLDQAAIINADDLLTNEGI---SFKPLTMDCYP-VSLKTSQKQGGYF 248
Query: 200 -----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
++ A G + + + G+HN N+ +A L + GV+ +A+ ++ +
Sbjct: 249 DGLNLDMIAKGKKISISHQEVILKGKHNMLNSMMATLGAIL--AGVEEKAIREGLQDFKN 306
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWK 314
HRM+ V I GV +V+DSK TN++AT L D + + GG K VL
Sbjct: 307 AAHRMEAVAT-IHGVAFVNDSKGTNVDATAYAL-DSYQQPLIWIAGGVDKGNDYSVL--D 362
Query: 315 TLVNNGLS-IPCFAVANMK-------------------DAVNHARRMATNGDAIVLSPGC 354
L+ + + C V N K AV A GD ++LSP C
Sbjct: 363 PLIKGKVKMLICLGVDNEKLKKAFEGKIKQIKETKDIHQAVQWALENGQAGDLVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVFQ 371
ASFD F+N+E RG F+
Sbjct: 423 ASFDLFKNYEDRGEQFK 439
>gi|419778037|ref|ZP_14303939.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK10]
gi|383187790|gb|EIC80234.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK10]
Length = 450
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A A ++
Sbjct: 203 YVAAKWNIQNKMTADDFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLADGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSSFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V +IQGV + +DSK+TN+ AT L K +++ GG + L+ K +
Sbjct: 317 VD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAAEKAGVAYVDATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|120597219|ref|YP_961793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
sp. W3-18-1]
gi|120557312|gb|ABM23239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
W3-18-1]
Length = 439
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 176/371 (47%), Gaps = 44/371 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGV 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL ++ V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLSENAEIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + VS ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 RSEIMPITEVS--------LIGSHNHAN-LLAAMALV-YAVGVDKQVMAKVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFG--------Y 307
R ++V GVT+V+DSKATN+ AT L L H +++ GG K
Sbjct: 303 RCEVVGIK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFSPLVEPL 361
Query: 308 SGVLIWKTLVNNGLSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
S V TL +G I V +M AV A +AT+GD ++LSP CAS D + N
Sbjct: 362 SKVTHLITLGRDGNKIAALKEGAIKVDSMAAAVAKAAALATSGDIVLLSPACASLDMYSN 421
Query: 363 FEHRGMVFQEL 373
F RG F+ L
Sbjct: 422 FMARGDDFRNL 432
>gi|261855069|ref|YP_003262352.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halothiobacillus
neapolitanus c2]
gi|261835538|gb|ACX95305.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halothiobacillus
neapolitanus c2]
Length = 471
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 171/378 (45%), Gaps = 51/378 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V ++D A + ++ +TG+NGKSTV VG++LN G+ A VGGN G P
Sbjct: 91 VRGDIDLALHA--SDVPVVLITGSNGKSTVTALVGELLNAAGVSAVVGGNFGTP------ 142
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPN-----KYFCPTVSVVLNLTPDHLERHKTMKNY 142
AL V V+EVSS+Q+E + P + VLN++ DHL+RH T+ +Y
Sbjct: 143 ---ALDLLTTDADVLVLEVSSFQLESTDFSGLAPAQMPRAATVLNISQDHLDRHGTLAHY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG-AFPGVKIDTEAKTASFEV 201
A K + + + +L + + + ++ W G A P D T + E
Sbjct: 200 AAIK---ETALHQARRAVLNRDDPMVAAMAERASGDVIWFGTAMPTQPSDFGLMTIAGES 256
Query: 202 ------PAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
+S L + + + GRHN N AA+A + + D+ ++ + L + +
Sbjct: 257 WLIQAQANATALSILPVQALGLTGRHNQMNVLAALALIQAVVPDVALNDDRLLNVLRQFT 316
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
PHR Q V I GV ++DDSKATN+ A ++ + V++ GGQ K
Sbjct: 317 GLPHRAQSVGV-INGVRFIDDSKATNVGAAVAAILGMPA-PLVLIAGGQGKGQDFAPLAE 374
Query: 305 -----------FGYSGVLIWKTLVNN-GLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
G +I + L N G + P V +M +AV A +A ++L+P
Sbjct: 375 SLVGRCAGLILMGQDQAVIAEALQNEPGATWPVRRVHSMIEAVQAAADIAPPQSTVLLAP 434
Query: 353 GCASFDEFRNFEHRGMVF 370
CAS D F ++ RG F
Sbjct: 435 ACASLDMFVSYVDRGNQF 452
>gi|330443875|ref|YP_004376861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
pecorum E58]
gi|328806985|gb|AEB41158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
pecorum E58]
Length = 419
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 166/347 (47%), Gaps = 60/347 (17%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+ VTG+NGK+T V+F+ + + LG+ A GN+G P+ E + + VVE
Sbjct: 104 IGVTGSNGKTTTVSFLTHLFHTLGLSAVSMGNIGTPILEL----------QGVSGIRVVE 153
Query: 106 VSSYQMEIPNKYFCPTVS--VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+SS+Q+ + + P S +LN+ +HL+ H TM Y + K H+ +++ + +
Sbjct: 154 ISSFQL-VDQEERIPVFSSAALLNVCQNHLDYHDTMDAYMMAKSHIANYVQDPQT----- 207
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
W+G G+ + + A FE + L + + R NY
Sbjct: 208 ----------------LWVGE--GISLGKPYR-AYFEETQEILDKASALKPIYLHDRSNY 248
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
A A V V +E I+ + PPHR++ + + V + +DSKAT +EA
Sbjct: 249 CAAYALAKEVCH----VPLEGFLLAIQTFKKPPHRIEYLGKK-HNVHYYNDSKATTVEAV 303
Query: 284 CTGLMDLKGHKCVILLGGQAKFGYSGVLIW------KTLVNNGLS-----------IPCF 326
L+ L G K +++LGG+ K G L + K ++ G +P
Sbjct: 304 KQALIAL-GSKVIVILGGRNKGGDFSALSFVLSQTAKHVIAMGECREEIVQAVAGVVPVC 362
Query: 327 AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+++A+ A+ +A+ GD+I+LSPGC SFD+F+NFE RG+ F++L
Sbjct: 363 MAHKLEEAIEIAQALASAGDSILLSPGCTSFDQFQNFEERGIFFKKL 409
>gi|146291592|ref|YP_001182016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
putrefaciens CN-32]
gi|145563282|gb|ABP74217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
putrefaciens CN-32]
Length = 439
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 176/371 (47%), Gaps = 44/371 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGV 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL ++ V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLSENAEIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + VS ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 RSEIMPITEVS--------LIGSHNHAN-LLAAMALV-YAVGVDKQVIAKVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFG--------Y 307
R ++V GVT+V+DSKATN+ AT L L H +++ GG K
Sbjct: 303 RCEVVGIK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFSPLVEPL 361
Query: 308 SGVLIWKTLVNNGLSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
S V TL +G I V +M AV A +AT+GD ++LSP CAS D + N
Sbjct: 362 SKVTHLITLGRDGNKIAALKEGAIKVDSMAAAVAKAAALATSGDIVLLSPACASLDMYSN 421
Query: 363 FEHRGMVFQEL 373
F RG F+ L
Sbjct: 422 FMARGDDFRNL 432
>gi|67459026|ref|YP_246650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
felis URRWXCal2]
gi|75536538|sp|Q4ULT8.1|MURD_RICFE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|67004559|gb|AAY61485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia felis
URRWXCal2]
Length = 449
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 174/374 (46%), Gaps = 50/374 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++S++D + +++ +AVTGTNGKST + +LN G++ V GN+G P +A
Sbjct: 90 IISDIDLLFEK-SKNLNFIAVTGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQA-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+SK + ++E+SS+Q+++ K F ++V+LN+TPDHL+RH+ M Y K
Sbjct: 147 -----KASKDGY---ILELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHQDMTGYIAAKS 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+F M + N + E + R L F KI + +
Sbjct: 198 KIFDRMDKDSYAAINIDNYYCREIFMLLQQEQRIKLI---PFSVTKILKNGISVVGDKIN 254
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+S N + G HN N +AA + IGV+ + + +I ++ PHRMQ +
Sbjct: 255 DNDISYKLPFNKNLQGTHNCEN--IAASYAVAKIIGVESKKILESISSFQSLPHRMQYIG 312
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------------- 304
I + + +DSKATN + + L L GG K
Sbjct: 313 S-INNIGFYNDSKATNAISAVQSIKALDN--IYWLAGGIPKEGGIEEIKPYFSKIKKAYF 369
Query: 305 FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA----IVLSPGCASFDEF 360
+G + + KT N + C N++ A + A + A +A I+L+P C+S+D+F
Sbjct: 370 YGQAKEIFAKTAKNIVDFVIC---DNLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQF 426
Query: 361 RNFEHRGMVFQELA 374
+NFE RG +F +L+
Sbjct: 427 KNFEERGELFMKLS 440
>gi|363895019|ref|ZP_09322039.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium ACC19a]
gi|361959776|gb|EHL13037.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium ACC19a]
Length = 449
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 167/342 (48%), Gaps = 44/342 (12%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKY 117
+ +G + +V GN+GN A I+L +K F + E+SSYQ+E I N
Sbjct: 120 SMLGDIYKKYDENTYVVGNIGN----AVLSSISLAKTKANF---ITELSSYQLETIVN-- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF 177
F ++V+LN+TPDHL RHKTM+NY K ++ + + + +L ++ ++ ++ +
Sbjct: 171 FRVHIAVILNITPDHLSRHKTMENYKNAKYNITKNQIESDFLVLNKDDESIDINLENVKS 230
Query: 178 NLAWIGAFP----GVKIDTEAKT--ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ + GV D E + ++ ++ +H ++G+HN N +A +
Sbjct: 231 KVIYFSMKEKLKNGVYYDREKDSIISTINGKEEEIIKAEDIH---LLGKHNIQNT-LACV 286
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+V LD + + I+ + HR+Q V R++ GV +V+DSK TN+++T + +
Sbjct: 287 TVSILD-KIPTALIAEAIKDFKAVKHRLQKV-REVDGVIYVNDSKGTNIDSTLKAIESI- 343
Query: 292 GHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANM 331
+ +++ GG K FG + LI T + ++ N+
Sbjct: 344 DNDIILIAGGYDKMLEFDDLIKGFNGKVKTLLLFGATKKLIRDTALKYDYK-DIISLKNL 402
Query: 332 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
K V A+ +A GD ++LSP CAS+D +++FE RG F EL
Sbjct: 403 KQCVQIAKIIAEKGDVVLLSPACASWDMYQSFEERGDEFIEL 444
>gi|398813805|ref|ZP_10572496.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus sp.
BC25]
gi|398037858|gb|EJL31035.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus sp.
BC25]
Length = 454
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 187/382 (48%), Gaps = 64/382 (16%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V++E++ A+Q+ I+ +TG+NGK+T T VG + +G++A VGGN+G L
Sbjct: 93 GIPVVTEVELASQI--AKAPIIGITGSNGKTTTTTLVGLIFKEVGLDAKVGGNIGTVL-- 148
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
C + P + V E+SS+Q+ + + F P + V+LNL P HL+ H TM+ Y
Sbjct: 149 ----CGLAEEAGPD-EWLVAELSSFQL-MGTREFRPHIGVLLNLYPAHLDYHHTMEEYLA 202
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF--PGVKIDTEA 194
K +F++ +LP+ + E K + + GAF G+ + +
Sbjct: 203 AKLKMFANQTADDAAILPYDQPEIVEKCKDLPSAIYYFSKSQEVPKGAFIKDGLILFADG 262
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + A+ ++ L N A+AA+ V L G D + S I++L T
Sbjct: 263 NGNTEPIVAIADITVPHLDN------------ALAAILVAKL-AGADKQ---SIIQVLTT 306
Query: 255 PP---HRMQIVHRDIQGVTWVDDSKATNLEAT--------------CTGL---MDLKGHK 294
P HRM+ V I+GV + +DSKATN EA C GL +D + +
Sbjct: 307 FPGVEHRMEFVD-SIRGVKYFNDSKATNPEAASRALQACKEPVVWICGGLDRGVDFR--E 363
Query: 295 CVILLGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 350
+ ++ G+ K G + ++ + G++ V ++ AV A ++A +GD ++L
Sbjct: 364 LLPVIQGRVKAVIALGQTAPILLERAQEAGIN-ERIHVDTVEKAVLAASQLAESGDVVLL 422
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CAS+D F +FE RG +F++
Sbjct: 423 SPACASWDMFPSFETRGSMFKD 444
>gi|308271438|emb|CBX28046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [uncultured
Desulfobacterium sp.]
Length = 468
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 192/399 (48%), Gaps = 78/399 (19%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G ++ E++ A++ I I +A+TGTNGK+T G+ML G++ FVGGN+GNPL
Sbjct: 90 KNGASIIGEIELASRFIKEPI--VAITGTNGKTTTTILTGKMLEESGLKVFVGGNIGNPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I S K + V E+SS+Q++ +YF P VSV+LN+T DHL+R+ Y
Sbjct: 148 -------IDYVDSGNKADIVVAEISSFQLDTI-EYFSPKVSVLLNITEDHLDRYPDFNAY 199
Query: 143 ALTKCHLFSHMVNTKLG----------------------LLPFGNQH-LNE-----AIKG 174
A +K +F +N K G +LPF N + LN+ I
Sbjct: 200 AKSKMRIF---INQKDGDYAVFNASDKHISLMAKDIKCRILPFFNHNTLNDYNEFAKIAD 256
Query: 175 HR--FNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232
R FN+ I A + D +FE L + ++G+HN N VAA +
Sbjct: 257 DRIVFNINNIAA---INSDATNPDKTFEKEF-----SLPFSGIHLLGKHNMEN--VAAAT 306
Query: 233 VLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
+ L G ++ + S +E ++ PHR++ V I GV + +DSKAT +++ L ++
Sbjct: 307 LATLAAGGNIAGIKSALEKFKSLPHRIEHVAT-INGVEYYNDSKATTVDSVIKAL-EVFN 364
Query: 293 HKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMK 332
++++GG+ K G S I +L G + +++
Sbjct: 365 KPVILIMGGRNKGSNFALLADAAKKHVKRLILIGESKEEIKSSL---GGIVETTLSDSLE 421
Query: 333 DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
+AV A + A + ++LSP C+SFD F ++ HRG F+
Sbjct: 422 NAVVTASKFAETDEVVLLSPACSSFDMFTSYAHRGETFR 460
>gi|374324849|ref|YP_005077978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
terrae HPL-003]
gi|357203858|gb|AET61755.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
terrae HPL-003]
Length = 473
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 180/403 (44%), Gaps = 75/403 (18%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G V++E++ A + ++ +TG+NGK+T T+VG++L G++ V GN+G P
Sbjct: 93 IELGIEVVTEVEVAYHLC--KAPMIGITGSNGKTTTTTWVGKLLEASGMKPIVAGNIGTP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L EAA + + VVE+SS+Q++ K F P V+ +LN+ HL+ H MK+
Sbjct: 151 LCEAAVDARS-------DEWMVVELSSFQLK-GTKDFKPAVACLLNVAETHLDYHGDMKD 202
Query: 142 YALTKCHLFSHMVNT-------------------KLGLLPFG-NQHLNEAIKGHRFNLAW 181
Y +K LF+ K LLPF + L E + A
Sbjct: 203 YVASKARLFASQTAADTAVLNWDDPVCRELVPYIKAKLLPFSMTERLQEGL------FAD 256
Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
P V D E + A GVV + + + + GR N NA A + + G
Sbjct: 257 PPYIPDVTDDIERSIVYRD--ASGVVHPIIGVAEIGLPGRFNVENALAACAIAIAV--GA 312
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--------- 291
+ L + R HR++ V G + ++SKATN +AT L K
Sbjct: 313 EPSGLAEPLSAFRGVEHRLEYVGEH-AGAAYYNNSKATNSKATMMALSSFKQPIVLIAGG 371
Query: 292 ----------------GHKCVILLGGQ----AKFGYSGVLIWKTLVNNGLSIPCFAVANM 331
G K V+LLG A + +V+NG A A +
Sbjct: 372 LDRGSDYAELVPSLQEGVKAVVLLGETRHKLADRARQAGIEHVEVVDNGKD----AAATL 427
Query: 332 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+AVN A ++A GD ++LSP CAS+D FR++E RG +F+E A
Sbjct: 428 VEAVNKAAQLAEPGDVVLLSPACASWDMFRSYEERGRIFKEAA 470
>gi|310828116|ref|YP_003960473.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
limosum KIST612]
gi|308739850|gb|ADO37510.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium limosum
KIST612]
Length = 458
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 156/336 (46%), Gaps = 42/336 (12%)
Query: 63 QMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV 122
++ + G + + GN+G+P+S A P V V E+S++Q+E NK F P
Sbjct: 133 EIFKNSGRKTYTVGNIGDPISNYVME--AAPED-----VFVAEISAFQLETINK-FRPVA 184
Query: 123 SVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE-----AIKGHRF 177
S +LNL+PDH++R+ TM+NY K +F + +L ++ + E + + F
Sbjct: 185 SAILNLSPDHMDRYGTMENYIAAKARIFENQRGEDFLVLNADDEQVCELGRQAQCRKYYF 244
Query: 178 NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237
+L A +D E V+ ++ M + G HN NA A +VL
Sbjct: 245 SLDKKVAQGAYAMDGGIFINDNE----SVIPICRIEEMGIKGPHNVQNALAA--TVLAYF 298
Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
+GVDV ++ T++ HR + V I GV +++DSK TN A L + K VI
Sbjct: 299 MGVDVVSIAETLKSFGGVEHRQEFVAT-IGGVDYINDSKGTNTNAAIVALNAMT--KPVI 355
Query: 298 LLGG--QAKFGYSGVL-----IWKTLVNNGLSIP-------------CFAVANMKDAVNH 337
L+ G K YS + K +V G + P V + +AV
Sbjct: 356 LIAGGYDKKEDYSEFIEVVCKKVKRMVLVGATAPQIEAAAESQGYYSTVRVGDYDEAVKV 415
Query: 338 ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
A A GD ++LSP CAS+D F NFE RG VF++L
Sbjct: 416 ASECAAPGDVVLLSPACASWDMFDNFEIRGQVFKDL 451
>gi|422644420|ref|ZP_16707558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|330957972|gb|EGH58232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. maculicola str. ES4326]
Length = 448
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 171/358 (47%), Gaps = 56/358 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAIAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRF--NLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E + F N F G++ + K +F+ + + + +KV
Sbjct: 221 ---SRPLIGEGLPCWTFGLNTPDFHGF-GLREENGEKYLAFQFENL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ +++ HR Q + R+ +GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REREGVHYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G LI +
Sbjct: 329 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGADFSGLRAPVAKHCRAAVLLGRDAELIAQ 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
L G ++P V ++ AV + +A +GDA++LSP CAS D F+N+E RG VF +
Sbjct: 388 VL---GDAVPLVRVDTLQAAVGRSAELARSGDAVLLSPACASLDMFKNYEERGRVFAQ 442
>gi|386312141|ref|YP_006008306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
putrefaciens 200]
gi|319424766|gb|ADV52840.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella
putrefaciens 200]
Length = 439
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 176/371 (47%), Gaps = 44/371 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGV 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL ++ V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLSENAEIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + VS ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 RSEIMPITEVS--------LIGSHNHAN-LLAAMALV-YAVGVDKQVMAKVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFG--------Y 307
R ++V GVT+V+DSKATN+ AT L L H +++ GG K
Sbjct: 303 RCEVVGIK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFSPLVEPL 361
Query: 308 SGVLIWKTLVNNGLSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
S V TL +G I V +M AV A +AT+GD ++LSP CAS D + N
Sbjct: 362 SKVTHLITLGRDGNKIAALKEGAIKVDSMAAAVAKAAALATSGDIVLLSPACASLDMYSN 421
Query: 363 FEHRGMVFQEL 373
F RG F+ L
Sbjct: 422 FMARGDDFRNL 432
>gi|190570951|ref|YP_001975309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|190357223|emb|CAQ54641.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
Length = 451
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 178/371 (47%), Gaps = 59/371 (15%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ S+++ + + K++ +TGTNGKST + +G +L G + +GGNLG P+ +
Sbjct: 101 KIKSDIELFLETKTTNQKVIGITGTNGKSTTTSLIGHILKSTGKKVAIGGNLGMPILDL- 159
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ ++ V+E SS+Q+E+ N+ +SV+LN+TPDH++RH +M NY TK
Sbjct: 160 ---------ERDAEIYVIEFSSFQLELMNE-INVDISVLLNITPDHIDRHGSMNNYIATK 209
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L + +K+ ++ N+ I FN F G KI A +
Sbjct: 210 LKLIN---GSKIAVIGCDNK-----ITSDVFN-----KFTGNKIPISASMSPSLSSQCLG 256
Query: 207 VSQLQLHNMKVMGRH-----NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+L+ H++ V N N VAA +V L +GVD + + I+ HR +
Sbjct: 257 TGKLENHSLSVSDVKINLVSNVEN-IVAAHAVCKL-LGVDSSTIVNEIKSFPGLRHRNEF 314
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
+ + I V +++DSKATN E+T ++ K ++GG++K
Sbjct: 315 LGK-IHNVLFINDSKATNAESTEKAILSYKN--IYWIVGGKSKKGGIESLSKHFTKIRKA 371
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD---AIVLSPGCASFDE 359
G S + + N + C+ N+++A A A N AI+LSP C+SFD+
Sbjct: 372 FLIGESTEVFANIMENKIDYMKCY---NLENAFKLAFEEAINSKEEVAILLSPACSSFDQ 428
Query: 360 FRNFEHRGMVF 370
++NFE RG F
Sbjct: 429 WKNFEERGEAF 439
>gi|260655415|ref|ZP_05860903.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
anthropi E3_33 E1]
gi|424845227|ref|ZP_18269838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Jonquetella
anthropi DSM 22815]
gi|260629863|gb|EEX48057.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
anthropi E3_33 E1]
gi|363986665|gb|EHM13495.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Jonquetella
anthropi DSM 22815]
Length = 438
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 179/372 (48%), Gaps = 43/372 (11%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ EL+F A +P K +AVTGTNGK+T +G +L G V GN+G PL+
Sbjct: 87 GIPVVGELEFLAPWLPG--KTIAVTGTNGKTTTTALLGHLLRCRGQSVAVVGNIGEPLAN 144
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA + V+E+SS+Q+ NK F P V+++ NL PDH++ H + +NY
Sbjct: 145 AAGTAV---------DYTVMELSSFQLHW-NKSFTPQVALLTNLAPDHIDWHGSYENYVA 194
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F ++ Q + A+ ++ +G G +I + + E +
Sbjct: 195 DKLKVFGRPGKGNWEIV----QARDAALVPSGGSVCTLGGTEGTRIYWDDQAVWLERDS- 249
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
G + ++G+HN NAA+A ++ +D L + L PPHR Q+V R
Sbjct: 250 GREKLFDRSQLSLVGQHNLENAAMAGAALALID--KSFAPLQGLSDFL-PPPHRCQLV-R 305
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------------- 304
+GVTWVDDSK TN+ +T T L + G K +I+LGG+ K
Sbjct: 306 VRRGVTWVDDSKGTNVASTRTALEGIDGPK-IIILGGKGKGEKYETLAQTVKARARNVIL 364
Query: 305 FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
G I L G+ + M++ V+ A +A GD ++LSP C S+D ++++E
Sbjct: 365 IGAESDKIEAALREAGVQ-SIHRTSCMEEVVSTADGLARPGDTVLLSPACTSWDMYQSYE 423
Query: 365 HRGMVFQELAFS 376
RG F+ L +
Sbjct: 424 QRGDHFKRLVMA 435
>gi|320540407|ref|ZP_08040057.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
symbiotica str. Tucson]
gi|320029338|gb|EFW11367.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
symbiotica str. Tucson]
Length = 439
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 168/355 (47%), Gaps = 52/355 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VGQM G +GGN+G P AL + + Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGQMAKAAGWAVGIGGNIGLP---------ALSLLRQECQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN+T DH++R+ ++ Y + K ++ + +VNT
Sbjct: 158 ELSSFQLETTHS-LRTAAATMLNVTEDHMDRYPFGLQQYRVAKLRVYENAGVCVVNT--- 213
Query: 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ L ++G G G ++ + V V L MK+
Sbjct: 214 -----DDTLTLPVRGTDARCVSFGVDVGDYHLNCQQGETWLRVRGEKV---LNTREMKLT 265
Query: 219 GRHNYHNAAVAALSVLGLDI--GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
G HNY NA A ++I ++AL + + PHR Q V + GV W++DSK
Sbjct: 266 GCHNYTNALAALALADAVNIPRASSLKALTTFTGL----PHRFQWVW-ECNGVRWINDSK 320
Query: 277 ATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCF--------- 326
ATN+ +T L L+ + +LLGG K L+ + L + + + CF
Sbjct: 321 ATNVGSTEAALKGLQVEGMLHLLLGGDGKSADFSPLV-RYLQGDNVRLYCFGRDGAQLVQ 379
Query: 327 ---AVANMKDAVNHARR----MATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
AVA + + + A R GD ++LSP CAS D+FRNFE RG F LA
Sbjct: 380 LRPAVATLTETLEQAMRDIACRVQPGDMVLLSPACASLDQFRNFEVRGDSFVRLA 434
>gi|213019467|ref|ZP_03335273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|212994889|gb|EEB55531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 443
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 178/371 (47%), Gaps = 59/371 (15%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ S+++ + + K++ +TGTNGKST + +G +L G + +GGNLG P+ +
Sbjct: 93 KIKSDIELFLETKTTNQKVIGITGTNGKSTTTSLIGHILKSTGKKVAIGGNLGMPILDL- 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ ++ V+E SS+Q+E+ N+ +SV+LN+TPDH++RH +M NY TK
Sbjct: 152 ---------ERDAEIYVIEFSSFQLELMNE-INVDISVLLNITPDHIDRHGSMNNYIATK 201
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L + +K+ ++ N+ I FN F G KI A +
Sbjct: 202 LKLIN---GSKIAVIGCDNK-----ITSDVFN-----KFTGNKIPISASMSPSLSSQCLG 248
Query: 207 VSQLQLHNMKVMGRH-----NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+L+ H++ V N N VAA +V L +GVD + + I+ HR +
Sbjct: 249 TGKLENHSLSVSDVKINLVSNVEN-IVAAHAVCKL-LGVDSSTIVNEIKSFPGLRHRNEF 306
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
+ + I V +++DSKATN E+T ++ K ++GG++K
Sbjct: 307 LGK-IHNVLFINDSKATNAESTEKAILSYKN--IYWIVGGKSKKGGIESLSKHFTKIRKA 363
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD---AIVLSPGCASFDE 359
G S + + N + C+ N+++A A A N AI+LSP C+SFD+
Sbjct: 364 FLIGESTEVFANIMENKIDYMKCY---NLENAFKLAFEEAINSKEEVAILLSPACSSFDQ 420
Query: 360 FRNFEHRGMVF 370
++NFE RG F
Sbjct: 421 WKNFEERGEAF 431
>gi|239947262|ref|ZP_04699015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239921538|gb|EER21562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 453
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 175/376 (46%), Gaps = 56/376 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+ S++D + R + +AVTGTNGKST + +LN G++ V GN+G
Sbjct: 90 ITSDIDLLFEK-SRILNFIAVTGTNGKSTTTALISHILNSNGLDYPVAGNIG-------V 141
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ +SK + V+E+SS+Q+++ K F ++V+LN+TPDHL+RH+ M Y K
Sbjct: 142 SALRAKASKDGY---VLELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHQDMTGYIAAKS 197
Query: 148 HLFSHMVNTKLGLLPFGNQHL---------NEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+F M ++ N + + IK F++ I + +D + K
Sbjct: 198 KIFDRMDKKSYAVINIDNDYCRKIFMLLQQEQRIKLIPFSVTKILENGILVVDDKIKDND 257
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+S N + G HNY N +AA + IGV+ + + +I ++ PHR
Sbjct: 258 --------ISYKLSFNKNLQGLHNYEN--IAASYAVAKIIGVEPKKIIESISSFQSLPHR 307
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG----------------Q 302
MQ + I +++ +DSKATN + + +K + L G +
Sbjct: 308 MQYIGS-INNISFYNDSKATN---AISAVQSIKALDNIYWLAGGTPKGGGIEEIKPYFSK 363
Query: 303 AKFGYSGVLIWKTLVNNGLSIPCFAVA-NMKDAVNHARRMATNGDA----IVLSPGCASF 357
K Y + N +I F + +++ A + A + A +A I+L+P C+S+
Sbjct: 364 IKKAYFYGQAKEIFANTAKNIVDFVICDDLEQAFDLAYKDAIGDNAEVKNILLAPSCSSY 423
Query: 358 DEFRNFEHRGMVFQEL 373
D+F+NFE RG +F +L
Sbjct: 424 DQFKNFEERGELFIKL 439
>gi|170025735|ref|YP_001722240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pseudotuberculosis YPIII]
gi|169752269|gb|ACA69787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
pseudotuberculosis YPIII]
Length = 438
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 166/350 (47%), Gaps = 42/350 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV T VG+M G VGGN+G P AL K Q+ V+
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGVGGNIGVP---------ALTLLKQDNQLTVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + + +LN+T DH +R+ ++ Y K ++ N K+ ++
Sbjct: 158 ELSSFQLETTHSLRA-SAATILNVTEDHTDRYPLGLQQYRAAKLRVYE---NAKVCVVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G G ++ + V V L MK+ GRHN
Sbjct: 213 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWLRVRGEKV---LNTREMKLSGRHN 269
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
Y NA A +G+ + + PHR Q+V + GV W++DSKATN+ +
Sbjct: 270 YTNALAALALA--DAVGIPRASSLKALTTFSGLPHRFQLV-LERHGVRWINDSKATNVGS 326
Query: 283 TCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA------------V 328
T L L+ + +LLGG K +SG + + L + + + CF V
Sbjct: 327 TEAALDGLQVDGTLHLLLGGDGKSADFSG--LTRFLQGDRIKVYCFGRDGGQLAALRPDV 384
Query: 329 ANMKDAVNHARRMATN----GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+ + + + A + GD ++LSP CAS D+FR+FEHRG F LA
Sbjct: 385 SQLTETMAQAMALVAKAVLPGDRVLLSPACASLDQFRSFEHRGNEFARLA 434
>gi|315612789|ref|ZP_07887700.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis ATCC 49296]
gi|419782972|ref|ZP_14308768.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK610]
gi|315314899|gb|EFU62940.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sanguinis ATCC 49296]
gi|383182706|gb|EIC75256.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK610]
Length = 450
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 175/370 (47%), Gaps = 42/370 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSSFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI----- 312
R+Q V +IQGV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 313 RLQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITG 371
Query: 313 WKTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
K +V G S + ++ DA A +AT GD ++LSP AS+D +
Sbjct: 372 LKKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLLSPANASWDMY 431
Query: 361 RNFEHRGMVF 370
NFE RG +F
Sbjct: 432 ANFEARGDLF 441
>gi|388543158|ref|ZP_10146449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. M47T1]
gi|388278470|gb|EIK98041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
sp. M47T1]
Length = 448
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 165/357 (46%), Gaps = 54/357 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGDMAAAAGKRVAVGGNLGTP---------ALDLLADDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS---HMVNTKLGLL 161
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +V + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVYNRQDAL 220
Query: 162 PFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMG 219
+ E + F L AF G++ + K +FE + VS+L K+ G
Sbjct: 221 T--RPLMGEGLPCWTFGLNKPDFKAF-GLREEDGQKYLAFEFQNLMPVSEL-----KIRG 272
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
HN A A LG +G+ E + +T+ HR Q + R+ GV++ DDSKATN
Sbjct: 273 SHN--QANALAALALGHAVGLPFEPMLATLRTFAGLAHRCQWL-RERNGVSYYDDSKATN 329
Query: 280 LEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWKT 315
+ A + D+ G K V++ GG K G LI
Sbjct: 330 VGAALAAIEGLGADIDG-KLVLVAGGDGKGADFSALKAPVAAHCRAVVLLGRDAELIAAV 388
Query: 316 LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
L G +P V + +AV + GDA++LSP CAS D F+N+E RG +F +
Sbjct: 389 L---GDDVPLVRVNTLDEAVEQCAALTQPGDAVLLSPACASLDMFKNYEERGRLFAQ 442
>gi|409122984|ref|ZP_11222379.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gillisia sp.
CBA3202]
Length = 447
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 190/374 (50%), Gaps = 42/374 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+SE++FAA+ S KI+ +TG+NGK+T ++ +L + G++ + GN+G+
Sbjct: 87 EHGIPVISEIEFAAEYT--SAKIIGITGSNGKTTTTKWIHHILKNAGLKVAMAGNVGDSF 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHK-TMK 140
++ + P V+E+SS+Q++ I N F P +++++N+TPDHL+R+ ++
Sbjct: 145 AKQV-------AGDP-VDCFVLELSSFQLDGIVN--FRPDIALLMNITPDHLDRYNYNIE 194
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
Y +K + + + ++ +++ ++ + N + K++ A
Sbjct: 195 EYIASKFRITMNQKEGDFFIYDADDELISKWLESNSVNAEKLPFSLQKKLEKGAYVEDNN 254
Query: 201 VPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ +Q + ++ + G+HN NA +AA +V L + + E + +++E + HR
Sbjct: 255 IKINLNNTQFIMPTSSLALEGKHNTKNA-MAASTVSQL-LRIRKETIRASMENFQGVEHR 312
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVN 318
++ V + I V +V+DSKATN AT L ++ I+ G YS +L LVN
Sbjct: 313 LEKVLK-INNVMYVNDSKATNTNATYYALESMETETVWIVGGVDKGNVYSELL---PLVN 368
Query: 319 NGL-SIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFD 358
+ +I C V N MK+AV A ++A G+ ++LSP CASFD
Sbjct: 369 EKVKAIICLGVDNSKIFEAFGNCVDTIVETHSMKEAVGMAYKLAERGNTVLLSPACASFD 428
Query: 359 EFRNFEHRGMVFQE 372
F N+E RG F+E
Sbjct: 429 LFENYEDRGRQFKE 442
>gi|226313426|ref|YP_002773320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
brevis NBRC 100599]
gi|226096374|dbj|BAH44816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
brevis NBRC 100599]
Length = 454
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 187/382 (48%), Gaps = 64/382 (16%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V++E++ A+Q+ I+ +TG+NGK+T T VG + G++A VGGN+G L
Sbjct: 93 GIPVVTEVELASQI--AKAPIIGITGSNGKTTTTTLVGLIFKEAGLDAKVGGNIGTVL-- 148
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
C + P + V E+SS+Q+ + + F P + V+LNL P HL+ H TM+ Y
Sbjct: 149 ----CGLAEEAGPD-EWLVAELSSFQL-MGTRKFRPHIGVLLNLYPAHLDYHHTMEEYLA 202
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF--PGVKIDTEA 194
K +F++ +LP+ + E K ++ + GAF G+ + +
Sbjct: 203 AKLKMFANQTADDAAILPYDQPEIVEKCKDLPASIYYFSKSQEVPKGAFVKDGLILFADG 262
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + A+ ++ L N A+AA+ V L G D + S I++L T
Sbjct: 263 NGNTEPIVAIADITVPHLDN------------ALAAILVAKL-AGADKQ---SIIQVLTT 306
Query: 255 PP---HRMQIVHRDIQGVTWVDDSKATNLEAT--------------CTGL---MDLKGHK 294
P HRM+ V I+GV + +DSKATN EA C GL +D + +
Sbjct: 307 FPGVEHRMEFVD-SIRGVKYFNDSKATNPEAASRALQACKEPVVWICGGLDRGVDFR--E 363
Query: 295 CVILLGGQAK----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVL 350
+ ++ G+ K G + ++ + G++ V ++ AV A ++A +GD ++L
Sbjct: 364 LLPVIQGRVKAVIALGQTAPILLERAQEAGIN-ERIHVDTVEKAVLAASQLAESGDVVLL 422
Query: 351 SPGCASFDEFRNFEHRGMVFQE 372
SP CAS+D F +FE RG +F++
Sbjct: 423 SPACASWDMFPSFETRGSMFKD 444
>gi|416052134|ref|ZP_11578050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992404|gb|EGY33807.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 434
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 173/381 (45%), Gaps = 44/381 (11%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
+K + LQ+G V+ +++ + + I +A+TG+NGKSTV T V +M G+
Sbjct: 76 VKTPEIQTALQAGVEVVGDIELFCREADKPI--VAITGSNGKSTVTTLVAEMAKAAGLSV 133
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
+GGN+G P AL + + V+E+SS+Q+E T + VLN+T DH
Sbjct: 134 GMGGNIGIP---------ALSLLNQQHDLYVLELSSFQLETTYS-LKATAATVLNVTEDH 183
Query: 133 LERHKTMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188
+ R+ +++Y K ++ + ++N + L +Q + + N +
Sbjct: 184 MNRYVDLQDYRQAKLSIYDNCQTAVINAEDPLTLPTSQQPQKQVSFGESNADY------- 236
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
++ TE V L MK+ GRHNY NA A G+++ + +
Sbjct: 237 RLKTENNKTYLMAHDETV---LACDEMKLSGRHNYMNALAAIALAQA--AGINLTGIRTA 291
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAK--- 304
+ HR Q+ H GV W++DSKATN+ +T L L+ K +LLGG K
Sbjct: 292 LREFGGLDHRFQVAHI-ADGVRWINDSKATNVGSTVAALTGLQIAGKLHLLLGGDGKGAD 350
Query: 305 FGYSGVLIWKTLV------NNGLSIPCFAVAN-----MKDAVNHARRMATNGDAIVLSPG 353
F LI + + +G + + N M+ A+ R GD ++LSP
Sbjct: 351 FSELARLINQPHIYCYCFGRDGEQLAALSSQNQLFDTMEHAIAAIRPQLQTGDMVLLSPA 410
Query: 354 CASFDEFRNFEHRGMVFQELA 374
CAS D+F FE RG F LA
Sbjct: 411 CASLDQFSCFEARGDEFTRLA 431
>gi|269967387|ref|ZP_06181447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
alginolyticus 40B]
gi|269827975|gb|EEZ82249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
alginolyticus 40B]
Length = 437
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 113/390 (28%), Positives = 178/390 (45%), Gaps = 74/390 (18%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G++ VGGN
Sbjct: 85 IQAVLAKGTAVVGDIELFAWAVQKPV--IAITGSNGKSTVTDLTGVMAKAAGLDVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLETMSSLKL-KAAAFLNLSEDHMDRYQ 192
Query: 138 TMKNYALTKCHLFSHMV-------------NTKLGLLPFG--NQHLNEAIKGHRFNLAWI 182
M +Y K +F+H + ++ L+ FG NQ + G+R W+
Sbjct: 193 GMSDYRQAKLRIFNHAALAVVNRDDQETFPDAEMPLVTFGSDNQDFGFEVDGNR---TWL 249
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
+D + + + +K++G+HN NA VA + D+
Sbjct: 250 -------LDHGQRVVASD-------------ELKLVGKHNLSNALVALALLKAADVNYH- 288
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGG 301
ALN+ ++ HR Q+V D QGV WV+DSKATN+ +T L L+ K +L+GG
Sbjct: 289 NALNA-LKNYTGLTHRCQVV-ADNQGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGG 346
Query: 302 QAKFGYSGVL--IWKTLVNNGLSIPCFAVA---------------NMKDAVNHARRMATN 344
K L I+ TL L + CF M+D +
Sbjct: 347 VGKGADFSPLKPIFATL---NLQLCCFGADGDEFMPLHESAIRFDTMEDVIQQVSSQLKP 403
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
GD ++LSP CASFD+F NF RG F LA
Sbjct: 404 GDMVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|238761555|ref|ZP_04622530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
kristensenii ATCC 33638]
gi|238700069|gb|EEP92811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
kristensenii ATCC 33638]
Length = 444
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 171/351 (48%), Gaps = 38/351 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV T VG+M G + VGGN+G P A L S K + Q+ V+
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVP---ALTLLQQLASQKQENQLVVL 163
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + + +LN+T DH +R+ ++ Y K ++ N K+ ++
Sbjct: 164 ELSSFQLETTSSLRA-SAATLLNVTEDHTDRYPFGLQQYRAAKLRVYE---NAKVCVVN- 218
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G G ++ + V V L MK+ GRHN
Sbjct: 219 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWLRVRGEKV---LNTREMKLSGRHN 275
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
Y NA A +G+ + + + PHR Q+V + GV W++DSKATN+ +
Sbjct: 276 YTNALAALALA--DAVGIPRSSSLTALTTFTGLPHRFQLVL-ERNGVRWINDSKATNVGS 332
Query: 283 TCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA-----VANMKDAV 335
T L L+ + +LLGG K +SG + + L + + I CF +A ++ V
Sbjct: 333 TEAALDGLQVDGTLHLLLGGDGKSADFSG--LTRFLQGDHIKIYCFGRDGKQLAELRPEV 390
Query: 336 NH------------ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+ A+ +A D ++LSP CAS D+FR+FE RG F LA
Sbjct: 391 SQLTETMEQAMALLAKSLAPR-DMVLLSPACASLDQFRSFEQRGDEFARLA 440
>gi|338737182|ref|YP_004674144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hyphomicrobium sp.
MC1]
gi|337757745|emb|CCB63568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hyphomicrobium sp.
MC1]
Length = 471
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 173/362 (47%), Gaps = 54/362 (14%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+ +TGTNGKST + +L H G++ +GGN+G P+ + L +P + VVE
Sbjct: 117 IGITGTNGKSTTTALISHILRHAGLDVQMGGNIGRPI-------LTLEPPEPG-RFHVVE 168
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
+SS+Q+++ PTV V+LN+TPDHL+RH ++++YA K L +G+ +
Sbjct: 169 LSSFQIDL-TPTLGPTVGVMLNVTPDHLDRHGSIEHYAEIKERLVLGADIAAVGI----D 223
Query: 166 QHLNEAIKGHRFNLAWIGAF-------PGVKIDTEAKTAS-FEVPAVGVVSQLQLHNMKV 217
A+ R N+ + AF PG + + S E AV + S + ++
Sbjct: 224 DDFGLAMLRRRINVGPVVAFSAEKSIAPGYSLLGDTIVCSNREGLAVKLGSLTGVPTLR- 282
Query: 218 MGRHNYHN--AAVAA----LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
G+HN N AAVAA LS LG +D + S+ L PHRM+ + R I V +
Sbjct: 283 -GKHNGQNALAAVAAVRECLSALGRTTDLDWQGALSSFPGL---PHRMEEIGR-IGKVLF 337
Query: 272 VDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-------YSGVLIWKTLVNNGLS-- 322
++DSKATN ++T L + GG+ K G + G + L+
Sbjct: 338 INDSKATNADSTEKALQSFP-RDVYWIAGGKPKAGGIESLEPHFGGITKAYLIGEATDAF 396
Query: 323 -------IPCFAVANMKDAVNHARRMATNGDA----IVLSPGCASFDEFRNFEHRGMVFQ 371
+P + +A+ A A D ++LSP CAS+D+FRNFE RG F+
Sbjct: 397 AATLDGKVPFERSGTLNEALWAASADAQLSDGQEPVVLLSPACASYDQFRNFEVRGDCFR 456
Query: 372 EL 373
L
Sbjct: 457 GL 458
>gi|189502202|ref|YP_001957919.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497643|gb|ACE06190.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
5a2]
Length = 450
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 179/382 (46%), Gaps = 49/382 (12%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L ++ ++ E++FA++ S+ +A+TG+NGKST +L G+ + GN
Sbjct: 79 IQALQEASIPIIDEVEFASRYTKASL--IAITGSNGKSTTTHLAYHLLKAGGLNVGIAGN 136
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G + + V+E+SS+Q+E + F ++ +LN+TPDHL+R+
Sbjct: 137 IGTSFARKVL--------LEEHNYYVLELSSFQLE-HLQTFKADIACILNITPDHLDRYD 187
Query: 138 T-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
+ NY K + +M+ + + ++ E + NL + +P +
Sbjct: 188 NQLNNYIAAKFRILRNMIKEGYFIYNQDDTNIREYLVKQTTNLPQL--YPISLTQSTHHG 245
Query: 197 ASFEVPAVGVVS-----QLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTI 249
A E + V QL + ++G+HN +N AA++ S+LGL ++ L +
Sbjct: 246 AYVENNHLHFVGDNYNFQLPTQTLPLLGKHNIYNTMAAISIASLLGLSYASILDGLRT-- 303
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG 309
+ PHRM+ + ++ V++ +DSKATN+E+ L + + GG K
Sbjct: 304 --FKGLPHRMEWI-ANVNQVSFYNDSKATNVESAAVALESFTS-PIIWIAGGYDKGNDYN 359
Query: 310 VLIWKTLVNNGL--------------------SIPCFAVANMKDAVNHARRMATNGDAIV 349
VL K +V N + +IP + M++AV+ A +A D ++
Sbjct: 360 VL--KPIVKNSVKALICLGKDNQTICKAFKESNIPIYETQVMQEAVSLAYTLAKPQDIVL 417
Query: 350 LSPGCASFDEFRNFEHRGMVFQ 371
LSP CASFD F+NFE RG F+
Sbjct: 418 LSPACASFDLFKNFEDRGEQFR 439
>gi|422590148|ref|ZP_16664805.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|330877135|gb|EGH11284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. morsprunorum str. M302280]
Length = 448
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 171/364 (46%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + VS+L
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKFLAFQFDNLMPVSEL-- 268
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 269 ---KVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-RERNGVDYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVAQYCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++P V ++ A + +A +GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVPLIRVDTVQAAAERSAELAQHGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|262195186|ref|YP_003266395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliangium
ochraceum DSM 14365]
gi|262078533|gb|ACY14502.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Haliangium
ochraceum DSM 14365]
Length = 490
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 171/385 (44%), Gaps = 48/385 (12%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVG---QMLNHLGIE-AFVGGNL 78
+G V++E++ A + + +++A+TGTNGKST G Q + G F GGNL
Sbjct: 94 DAGAEVIAEIELAYRCLHPEAQLIAITGTNGKSTTTALTGALCQAASDAGAPPTFCGGNL 153
Query: 79 GN-PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
GN PL EA H P++ V V EV+ + +E F P V+ LN+T DHL+R+
Sbjct: 154 GNHPLIEAVDH----PANTAGGFV-VAEVAGFMLET-CAGFRPNVAACLNITEDHLDRYG 207
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP----------G 187
TM YA K ++ + N H + G + + F G
Sbjct: 208 TMDVYASMKTRVYRWQRADDFAI---ANAHCARTLAGAQAAAGRVLVFDAEAPLPPGTCG 264
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
+ E A G + ++ ++G+HN NA A L+ +GV +A+ +
Sbjct: 265 AYLSPERDEIVLRPEADGPEHRFPAADLPLIGQHNLENAMAAYLAAH--LVGVSDDAIRA 322
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG- 306
R HRM+ V + V + DDSK TN+ A + V++ GG K G
Sbjct: 323 GARSFRPQKHRMERVGEKGE-VVFYDDSKGTNVAAVAASMRGFP-RPAVLIAGGVDKGGS 380
Query: 307 YSGVLIWKTLVNNGLSI-------------------PCFAVANMKDAVNHARRMATNGDA 347
Y+ + V GL + P +M+DAV A +A GDA
Sbjct: 381 YAPMFEALRDVARGLVLIGEARPLIRAAASEAGAAYPVVDAESMEDAVRKAAALARAGDA 440
Query: 348 IVLSPGCASFDEFRNFEHRGMVFQE 372
+VLSP C+S+D FRNF RGM F++
Sbjct: 441 VVLSPACSSYDMFRNFGERGMAFRD 465
>gi|345881464|ref|ZP_08832982.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella oulorum
F0390]
gi|343919429|gb|EGV30176.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prevotella oulorum
F0390]
Length = 443
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 183/380 (48%), Gaps = 49/380 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+Q G ++SE++FA + K++ +TG+NGK+T + + + G++ + GN+G
Sbjct: 82 LMQQGTPIISEIEFAGRYT--HAKMVCITGSNGKTTTTSLIYHIFKTAGLDVGLAGNIG- 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKT- 138
H +AL ++ + V+E+SS+Q++ N Y F V+++LN+TPDHL+R+
Sbjct: 139 -------HSLALQVAESPHEYYVIELSSFQLD--NMYQFKADVAILLNITPDHLDRYDNC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-------GVKID 191
+NYA K + + + + + + ++ H + +P GV
Sbjct: 190 FENYAEAKLRILQNQTQADSFIYWKDDPVIAKELQKHAVHAK---TYPFAAHKENGVVGY 246
Query: 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
E + + P+ + Q +L + G+HN +N+ A L+ + I D+ + ++
Sbjct: 247 IEQEQYTLAYPSTFQMPQSEL---SLTGKHNLYNSLAAGLAANIVGIPHDI--IRQSLSD 301
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------- 304
HR++ V + + V +++DSKATN++A C ++ +++LGG+ K
Sbjct: 302 FPGVEHRLEKVCK-VNNVLYINDSKATNVDA-CWYALESMTTPTILILGGRDKGNDYKPL 359
Query: 305 ----------FGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
Y G K N + L +P +M D V MA G+ ++LSP
Sbjct: 360 LPLVKERCVGLVYLGANNQKLHDNFDHLGLPVRDTHSMSDCVKACFEMAKPGETVLLSPC 419
Query: 354 CASFDEFRNFEHRGMVFQEL 373
CASFD F+N E RG F+ L
Sbjct: 420 CASFDLFKNMEDRGEQFKTL 439
>gi|418967472|ref|ZP_13519135.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK616]
gi|383344085|gb|EID22255.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK616]
Length = 450
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 175/369 (47%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +T +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTSTDFLVLNF-NQDLAKELT-SKTQATVVPFSTQEKVDGAYLEDGQLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q V +I+GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 314 KTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
K +V G S + ++ DA A +AT GD ++LSP AS+D +
Sbjct: 373 KKMVILGQSAERVKRAADKAGVAYMDATDIADATRKAYELATQGDVVLLSPANASWDMYA 432
Query: 362 NFEHRGMVF 370
NFE RG +F
Sbjct: 433 NFEVRGDLF 441
>gi|269960239|ref|ZP_06174614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
1DA3]
gi|269835046|gb|EEZ89130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
1DA3]
Length = 437
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 172/378 (45%), Gaps = 50/378 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ ++ G V+ +++ A + + + +A+TG+NGKSTV G + G+ VGGN
Sbjct: 85 IQTIIAKGTPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVLAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + LNL+ DH++R+
Sbjct: 143 IGVP---------ALDLLEQDADLYVLELSSFQLET-TASLKLKAAAFLNLSEDHMDRYD 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---GVKIDTEA 194
M +Y K +F NT+L ++ N+ E L G+ G+++D
Sbjct: 193 GMADYRQAKLRIFD---NTELAVV---NRDDRETFPETETPLVTFGSDEQAYGLEVDGN- 245
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEIL 252
+T + + S +K++G+HN NA V A L G+D + AL + +
Sbjct: 246 RTWLLDHGQRVIASD----ELKLVGKHNLANALVVLALLKAAGVDYHKSLNALKTYTGL- 300
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKFGYSGVL 311
HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K G
Sbjct: 301 ---THRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK-GADFTP 355
Query: 312 IWKTLVNNGLSIPCFAVA---------------NMKDAVNHARRMATNGDAIVLSPGCAS 356
+ L + CF M+D + GD ++LSP CAS
Sbjct: 356 LKPIFATLNLQLCCFGADGDEFMPLHESATRFDTMEDVIQQISSQLKTGDMVMLSPACAS 415
Query: 357 FDEFRNFEHRGMVFQELA 374
FD+F NF RG F LA
Sbjct: 416 FDQFDNFMARGDAFAALA 433
>gi|383938512|ref|ZP_09991721.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pseudopneumoniae SK674]
gi|418973968|ref|ZP_13521907.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383346187|gb|EID24252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383714572|gb|EID70569.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pseudopneumoniae SK674]
Length = 450
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 175/370 (47%), Gaps = 42/370 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELASK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI----- 312
R+Q V +IQGV + +DSK+TN+ AT L K V++ GG + L+
Sbjct: 313 RLQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDDLVPDITG 371
Query: 313 WKTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
K +V G S + ++ DA A +AT GD ++LSP AS+D +
Sbjct: 372 LKKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLLSPANASWDMY 431
Query: 361 RNFEHRGMVF 370
NFE RG +F
Sbjct: 432 ANFEVRGDLF 441
>gi|91205696|ref|YP_538051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
bellii RML369-C]
gi|118595687|sp|Q1RI52.1|MURD_RICBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|91069240|gb|ABE04962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia bellii
RML369-C]
Length = 450
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 177/365 (48%), Gaps = 56/365 (15%)
Query: 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
+ + +LAVTGTNGKST + +L+ G++ V GN+G P+ +A +SK +
Sbjct: 102 KGLNLLAVTGTNGKSTTTALISHILSDNGLDYPVAGNIGVPVLQA-------KASKGGY- 153
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
V+E+SS+Q+++ K F ++V+LN+TPDHL+RH+ M+ Y K +F M G+
Sbjct: 154 --VLELSSFQLDLV-KTFAAKIAVLLNITPDHLDRHENMEGYITAKSKIFDRMDKDSYGI 210
Query: 161 LPFGNQHLNEA---------IKGHRFNLAWIGAFPGVKIDTEAKTAS-FEVPAVGVVSQL 210
+ N + +E IK F++ I G+ I + T + FE + ++S
Sbjct: 211 INIDNDYCHEIFTNLQQKHHIKLIPFSVTKILE-KGISIVNDIITDNFFEHISFKLIS-- 267
Query: 211 QLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268
N + G HN N A+ A ++GL+ +E+++S + PHRMQ + +I
Sbjct: 268 ---NKSLQGIHNSENIAASYAVARIIGLEPVKIIESISS----FQGLPHRMQYL-GNIDD 319
Query: 269 VTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG---------------YSGVLIW 313
+ + +DSKA+N A + L L GG AK G Y
Sbjct: 320 INFYNDSKASNAIAAVQSIKALDN--IYWLAGGIAKEGGIEEIKPYFSKIKKAYFYGQAK 377
Query: 314 KTLVNNGLSIPCFAVA-NMKDAVNHARRMATNGDA----IVLSPGCASFDEFRNFEHRGM 368
+ N I F + ++K A A + A + I+L+P C+S+D+F+NFE RG
Sbjct: 378 EMFANTAKDIIDFVICDDLKQAFELAYKDACKDNEKEKNILLAPCCSSYDQFKNFEERGE 437
Query: 369 VFQEL 373
+F L
Sbjct: 438 LFIRL 442
>gi|342163377|ref|YP_004768016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pseudopneumoniae IS7493]
gi|341933259|gb|AEL10156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pseudopneumoniae IS7493]
Length = 450
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/370 (28%), Positives = 176/370 (47%), Gaps = 42/370 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDEDTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + R A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELA--RKTQATVVPFSTLEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGNHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI----- 312
R+Q V+ +I+GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 313 RLQFVN-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITG 371
Query: 313 WKTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
K +V G S + ++ DA A +AT GD ++LSP AS+D +
Sbjct: 372 LKKMVILGQSAERVKRAADKAGVTYVDATDIADATRKAYELATQGDVVLLSPANASWDMY 431
Query: 361 RNFEHRGMVF 370
NFE RG +F
Sbjct: 432 ANFEVRGDLF 441
>gi|225856379|ref|YP_002737890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae P1031]
gi|225858514|ref|YP_002740024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae 70585]
gi|387626084|ref|YP_006062256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae INV104]
gi|417693620|ref|ZP_12342809.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47901]
gi|444381759|ref|ZP_21179965.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS8106]
gi|444385444|ref|ZP_21183517.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS8203]
gi|444409214|ref|ZP_21205811.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0076]
gi|444411969|ref|ZP_21208295.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Streptococcus pneumoniae PNI0153]
gi|444422074|ref|ZP_21217738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0446]
gi|254766057|sp|C1C648.1|MURD_STRP7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|254766061|sp|C1CJF2.1|MURD_STRZP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|225722058|gb|ACO17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 70585]
gi|225725603|gb|ACO21455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae P1031]
gi|301793866|emb|CBW36259.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae INV104]
gi|332204703|gb|EGJ18768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47901]
gi|444250046|gb|ELU56530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS8203]
gi|444254011|gb|ELU60458.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS8106]
gi|444275301|gb|ELU80928.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Streptococcus pneumoniae PNI0153]
gi|444279948|gb|ELU85328.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0076]
gi|444288570|gb|ELU93462.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0446]
Length = 450
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|295135636|ref|YP_003586312.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
profunda SM-A87]
gi|294983651|gb|ADF54116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
profunda SM-A87]
Length = 445
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 181/378 (47%), Gaps = 40/378 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ L G V+SE++FAAQ S I+ +TG+NGK+T +L G++ + GN
Sbjct: 80 IKALRAKGIPVISEIEFAAQYT--SAVIVGITGSNGKTTTTKLTHHILKDGGLQVGMAGN 137
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ ++ A V+E+SS+Q++ K F P ++V+ N+TPDHL+R++
Sbjct: 138 VGDSFAKQVAETNA--------GYYVLELSSFQLDGIEK-FRPHIAVLTNITPDHLDRYE 188
Query: 138 -TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
+NY K + + + ++ + +K ++ + K++ A
Sbjct: 189 YKFENYIEAKFRITKNQTKDDYFIYDADDEVITNWLKTNKIEAQLLPFSLERKLENGAYL 248
Query: 197 ASFEVPAVGVVSQLQL--HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + ++L + ++ + G+HN NA AA L I + + ++E +
Sbjct: 249 ENDTIIIKTENTELTMATSDLTLQGKHNTKNAMAAATVAKLLKIRKNT--IRESMESFQG 306
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWK 314
HR++ V + I V +++DSKATN+ AT L ++G V +LGG K L+
Sbjct: 307 VEHRLEKVLK-INNVQYINDSKATNVNATYYALESMEGQ-TVWILGGVDKGNVYDELL-- 362
Query: 315 TLVNNGL-SIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGC 354
LVN + +I C V N M +AV A R++ GD ++LSP C
Sbjct: 363 PLVNEKVKAIICLGVDNTKIMNSFGNCVETLIETQSMSEAVKMAYRLSEKGDTVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F N+E RG F+E
Sbjct: 423 ASFDLFENYEDRGRQFKE 440
>gi|210622333|ref|ZP_03293102.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
gi|210154321|gb|EEA85327.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
Length = 455
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 162/334 (48%), Gaps = 33/334 (9%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYF 118
+ G++ G E +V GN+GNP+ +A + + F V E+SS+Q+E K F
Sbjct: 130 SLTGEIFEKAGKETYVVGNIGNPVIDA----VQAANEGASF---VTELSSFQLE-SIKDF 181
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN 178
P+VS VLN+T DH+ RH TM+NY K +F + +L + ++ + N
Sbjct: 182 KPSVSAVLNITEDHMNRHHTMENYIDAKARVFMNQDKNDFCVLNYDDELTRALAEKCNAN 241
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA-AVAALSVLGLD 237
+ + ++ + + ++ +++ + + G HN N A AA++ +
Sbjct: 242 VVFFSRLEKLEKGIYVENGDIIIDIDEKINLMKVCELSLPGGHNLENCMAAAAMAYVS-- 299
Query: 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI 297
G+D+E + ++ + HR++ V ++++GV +V+DSK TN ++T + + + ++
Sbjct: 300 -GIDIEVIREVLKTFKAVEHRLEFV-KEVEGVKYVNDSKGTNPDSTIKAVQAYE-NPIIL 356
Query: 298 LLGGQAKFGYSGVLIW------KTLVNNGLSIPCFA-------------VANMKDAVNHA 338
+ GG K L+ KTLV G + V +MK+AV
Sbjct: 357 IAGGYDKGSTYDELLEIAKKNVKTLVLLGQTADKIEEAARRIGFTDIHRVEDMKEAVKTC 416
Query: 339 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+A GD ++LSP CAS+ ++NFE RG F++
Sbjct: 417 HDIAKEGDIVLLSPACASWGMYKNFEVRGKDFKD 450
>gi|348030102|ref|YP_004872788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
nitratireducens FR1064]
gi|347947445|gb|AEP30795.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
nitratireducens FR1064]
Length = 479
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 178/374 (47%), Gaps = 62/374 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPK-FQVAV 103
++ +TG+NGK+TV +G++L H G++ + GN G + A + +S+ K + V
Sbjct: 111 LIGITGSNGKTTVTDMLGKVLTHAGLQVELAGNYG----KCAIDLLLEEASRVKPLDIVV 166
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS---HMVNTKLGL 160
+E+SSYQ+E+ + +LN+T DHL+RH + Y L K +FS +++ + +
Sbjct: 167 LELSSYQLEMTESLRLE-FATILNITEDHLDRHGSFDAYKLAKQRIFSMSKNIIACRDEV 225
Query: 161 LPFGNQHL-NEAIKGH---RFNLAWIGAFPGVK-------IDTEAKTASFEVPAVGVVSQ 209
L + H+ N + R I A G+K I + KT+ V G VS
Sbjct: 226 LSYPESHVGNNTVNSDQETRQKTKRICAEVGLKSTDTGYSISKDQKTSEPFVQFNG-VSL 284
Query: 210 LQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH---- 263
L ++++ G HNY NA + A L LD + +EA+ + + PHR Q +H
Sbjct: 285 FMLSDLQLKGAHNYINAMIVLAICDQLMLDRKLTIEAICA----YQGLPHRFQTIHASNK 340
Query: 264 ---RDIQGVTWVDDSKATNLEATCTGLMDLKGHK--CVILLGGQAKFGYSGV--LIWKTL 316
+ ++W++DSKATN+ A L K V++ GG AK GV L K L
Sbjct: 341 IDGDKVSNISWINDSKATNVGACQAALACFKNSDDYLVLIAGGDAK----GVDLLPLKEL 396
Query: 317 VNNGLS---------------IP-CFAVANMKDAVNHARRMATNGD----AIVLSPGCAS 356
++ + +P V +++ AV+ A + D ++LSP CAS
Sbjct: 397 IDTQVKHLIVLGKDAQKFIQLVPKAIRVRDLQQAVSTAISLLQKADYENAVVLLSPACAS 456
Query: 357 FDEFRNFEHRGMVF 370
D F N++ RG VF
Sbjct: 457 LDMFSNYQERGDVF 470
>gi|421226866|ref|ZP_15683580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2072047]
gi|395597936|gb|EJG58142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2072047]
Length = 450
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/368 (28%), Positives = 173/368 (47%), Gaps = 38/368 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + AF ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVAFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V DI+GV + +DSK+TN+ AT L K V++ GG +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
G S + +T G + ++ DA A +AT GD ++LSP AS+D + N
Sbjct: 376 VILGQSAERVKRTADKAG--VAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYAN 433
Query: 363 FEHRGMVF 370
FE RG +F
Sbjct: 434 FEVRGDLF 441
>gi|422650972|ref|ZP_16713772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|330964055|gb|EGH64315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 448
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/364 (30%), Positives = 171/364 (46%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGPP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + VS+L
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKFLAFQFDNLMPVSEL-- 268
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 269 ---KVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-RERNGVDYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVAQYCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++P V ++ A + +A +GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVPLIRVDTLQAAAERSAELAQHGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|418718421|ref|ZP_13277954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. UI 09149]
gi|418737602|ref|ZP_13293999.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
gi|410744783|gb|EKQ93519.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. UI 09149]
gi|410746796|gb|EKQ99702.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
Length = 462
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 167/385 (43%), Gaps = 91/385 (23%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ +TGT+GKST + V +L + GGNLG P + I+L AV
Sbjct: 103 KIIGITGTDGKSTTTSLVAHLLKKDFSDLKEGGNLGIPFTSFCKEPISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHL-------FSHMVNT 156
+E+SSYQ+E + VSV LNL PDHLERH+TM+NY K + S +V+
Sbjct: 154 LELSSYQLEDSSPLDL-NVSVFLNLAPDHLERHETMENYFRAKLKIADLQNPNHSLIVSE 212
Query: 157 KL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K+ LL FG +EAI +E +T+ F +
Sbjct: 213 KIREKILNSTSVRCKLLSFGRATTSEAILDES--------------SSEIRTSKF----I 254
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+S+ L G HN N A A L+ IG E++ + I PHR QI
Sbjct: 255 YDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQAQIPFFMGLPHRFQIAGE 307
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKFGYSGVL------------ 311
+G+++++DSK+TNL + G+ K + ++LGG+ K L
Sbjct: 308 K-RGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPKQEDPKPLYDFLMRRIGCVV 366
Query: 312 -------IWKTLVNNGLSIPCFAVANMKDAVN------------HARRMATNGDA----I 348
+W+ + N + F+V N+ +A R++ + +
Sbjct: 367 LIGEARSVWEKGIRNVIGEKLFSVENLDEAFKIFKKWNVISESPEIRKIRLSSEITISYF 426
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
V SP C SFD+++NFE RG F L
Sbjct: 427 VFSPACVSFDQYKNFEERGNHFLSL 451
>gi|168492843|ref|ZP_02716986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC3059-06]
gi|418073537|ref|ZP_12710797.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11184]
gi|418078185|ref|ZP_12715408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 4027-06]
gi|418081069|ref|ZP_12718279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6735-05]
gi|418098060|ref|ZP_12735160.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6901-05]
gi|418104737|ref|ZP_12741797.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44500]
gi|418114179|ref|ZP_12751170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5787-06]
gi|418173050|ref|ZP_12809664.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41277]
gi|418216139|ref|ZP_12842863.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae Netherlands15B-37]
gi|419431090|ref|ZP_13971236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP05]
gi|419433351|ref|ZP_13973470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40183]
gi|419464151|ref|ZP_14004044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04175]
gi|419497634|ref|ZP_14037342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47522]
gi|419534128|ref|ZP_14073635.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17457]
gi|421280675|ref|ZP_15731474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04672]
gi|421309119|ref|ZP_15759748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA62681]
gi|183576912|gb|EDT97440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC3059-06]
gi|353747376|gb|EHD28032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 4027-06]
gi|353751114|gb|EHD31747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11184]
gi|353751808|gb|EHD32439.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6735-05]
gi|353770425|gb|EHD50938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6901-05]
gi|353779171|gb|EHD59637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44500]
gi|353787477|gb|EHD67879.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5787-06]
gi|353839749|gb|EHE19823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41277]
gi|353873190|gb|EHE53051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae Netherlands15B-37]
gi|379539370|gb|EHZ04549.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04175]
gi|379568162|gb|EHZ33144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17457]
gi|379577481|gb|EHZ42400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40183]
gi|379599898|gb|EHZ64680.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47522]
gi|379632334|gb|EHZ96910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP05]
gi|395884032|gb|EJG95074.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04672]
gi|395911863|gb|EJH22727.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA62681]
Length = 450
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|302389514|ref|YP_003825335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermosediminibacter oceani DSM 16646]
gi|302200142|gb|ADL07712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Thermosediminibacter oceani DSM 16646]
Length = 452
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 168/349 (48%), Gaps = 34/349 (9%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TGTNGK+T T +G++L + G V GN+G PL + A SK VV
Sbjct: 110 IIAITGTNGKTTTTTLIGEILKNDGKNISVAGNIGTPLIQEADKN----GSK---DYIVV 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
EVSS+Q+E + F P +SV+LN+T DHL RHKT +NY K + + +L +
Sbjct: 163 EVSSFQLENIVR-FKPKISVILNITEDHLNRHKTFENYIEAKARILENQDEEDFTVLNYD 221
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNY 223
+ + K R + + ++ K + G + L+ + + G HN
Sbjct: 222 DPIVASLEKRARSKIVFFSRKQELQEGVYVKNDVIVIRENGNIYPILKAKELGIKGSHNL 281
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
NA +AA++V + ++ L T++ HR++ V I GV +++DSK TN +A
Sbjct: 282 ENA-LAAVAVAWI-TKANLNNLAETLKDFHGVEHRLEYVDT-IDGVKFINDSKGTNPDAA 338
Query: 284 CTGLMDLKGHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSI 323
L + G +++ GG K G + I +T G
Sbjct: 339 QKALEAVDG-PIILIAGGYDKKVDFRPFVRSFFGKVKKVVLIGATADQIERTAREEGF-F 396
Query: 324 PCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
A+M++AV A+R A GD ++LSP CAS+D F NFE RG VF+E
Sbjct: 397 EVEKAASMREAVEIAKRSAEPGDTVLLSPACASWDMFSNFEERGRVFKE 445
>gi|421860348|ref|ZP_16292479.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus
popilliae ATCC 14706]
gi|410830096|dbj|GAC42916.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus
popilliae ATCC 14706]
Length = 476
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 179/395 (45%), Gaps = 62/395 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + S I+ +TG+NGK+T T+VG ML G+ V GN+G P
Sbjct: 93 LALGIEVVTEVEVAYHL--SSAPIIGITGSNGKTTTTTWVGNMLEAAGLRPIVAGNIGTP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L +AA A +V + E+SS+Q++ F P V+ +LN++ HL+ H TM++
Sbjct: 151 LCQAAGEAGA-------DKVLLAELSSFQLK-GTSAFRPRVASLLNISNTHLDYHVTMED 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y +K LF +M N + +L + + W+ + V+ + E
Sbjct: 203 YVQSKARLFRNMANGDVAVLNADDATCRVLAPDIGARIWWVSSTQRVECGVYVEPPYPEA 262
Query: 202 PAVGVVSQLQL---------------HNMKVMGRHNYHNA-AVAALSVLGLDIGVDVEAL 245
G QL + V GR+N NA A A+S+ G + L
Sbjct: 263 SGEGEEDDRQLVYADEAGQLHPIIGVREIGVPGRYNVDNALAAVAISIAA---GAEPAVL 319
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC-VILLGGQAK 304
+ R HR++ V ++ G ++ ++SKATN +AT LM L+ + V+L+ G
Sbjct: 320 ADPLRSFRGVEHRLEYVG-EVNGASYYNNSKATNTKAT---LMALEAFEAPVVLIAGGLD 375
Query: 305 FGYSGVLIWKTLVNNGLSIPCF--------AVA----------------NMKDAVNHARR 340
G + + L ++ A+A N +AV+ A R
Sbjct: 376 RGLDFLELIPVLEERAAAVVTMGETREILAAIAAKAGLTNVAVVDNVDNNASEAVSEAVR 435
Query: 341 MATN----GDAIVLSPGCASFDEFRNFEHRGMVFQ 371
+A GD ++LSP CAS+D F ++E RG +F+
Sbjct: 436 LAAGYAKPGDVVLLSPACASWDMFPSYEERGRMFK 470
>gi|418089085|ref|ZP_12726243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43265]
gi|418116417|ref|ZP_12753391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6963-05]
gi|419439903|ref|ZP_13979957.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40410]
gi|353762772|gb|EHD43330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43265]
gi|353790255|gb|EHD70638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 6963-05]
gi|379580514|gb|EHZ45404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40410]
Length = 450
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 176/366 (48%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K + V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDK---DMLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|89095261|ref|ZP_01168182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neptuniibacter
caesariensis]
gi|89080468|gb|EAR59719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
sp. MED92]
Length = 449
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/358 (30%), Positives = 167/358 (46%), Gaps = 52/358 (14%)
Query: 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101
S ++A+TG+N KSTV T VG+M GI V GN+G P+ E +P+ +
Sbjct: 108 SAPVIAITGSNAKSTVTTLVGEMAEAAGINVGVCGNIGTPVLEML--------EQPEKDL 159
Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG-- 159
V+E+SS+Q+E N V+ VLN++PDH++R+ +M++Y K +F N +
Sbjct: 160 YVIELSSFQLETTNDLRA-EVATVLNISPDHMDRYDSMQDYYKAKHRIFRGAKNVVVNRD 218
Query: 160 ------LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH 213
LLP G +K F+L P +K+ + A+G+ +
Sbjct: 219 DSLTAPLLPQG-------VKQTAFHLGK----PDLKLFGLIEDQGDVWLALGLDKLIAAS 267
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
+K+ GRHN NA A + +D A+ + + HR + V QGVT+ +
Sbjct: 268 ELKMRGRHNLANALAALALGQAAGLPMD--AMLNALRGFTGLRHRCEWVAEH-QGVTYFN 324
Query: 274 DSKATNLEATCTGLMDLKG-----HKCVILLGGQAKFG-----------YSGVLIWKTLV 317
DSK TN+ AT L L G + V++ GG K Y L++ +
Sbjct: 325 DSKGTNVGATVAALNGLGGTLSEENGIVLIAGGDGKGAEFVELAEPLRNYGRALVYIGVD 384
Query: 318 NNGLSIPCFAV-----ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
L+ C + A M +AV A ++A +GD ++LSP CASFD F F RG F
Sbjct: 385 GERLASQCGDINSRPAATMDEAVVIASQLAKSGDIVLLSPACASFDMFAGFPQRGDAF 442
>gi|77460896|ref|YP_350403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
fluorescens Pf0-1]
gi|118595675|sp|Q3K742.1|MURD_PSEPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|77384899|gb|ABA76412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
fluorescens Pf0-1]
Length = 448
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 163/356 (45%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A++G+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L+ AF G++ + K +FE + + + +K+
Sbjct: 221 T---RPLMGEGQPCWTFGLSKPDFKAF-GLREENGEKYLAFEFQNL-----MPVRELKIR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G +G+ +A+ + HR Q V RD+ GV + +DSKAT
Sbjct: 272 GAHNQSNALAALAL--GHAVGLPFDAMLVALRTFAGLEHRCQWV-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGKGAEFKDLRDPVATHCRAVILMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P + DAV R A GD ++LSP CASFD F N+E RG F
Sbjct: 388 AI---GDAVPLIRATTLVDAVAQCRAAAQPGDVVLLSPACASFDMFNNYEDRGHQF 440
>gi|417924146|ref|ZP_12567598.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK569]
gi|342836200|gb|EGU70416.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis SK569]
Length = 450
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 175/369 (47%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +T +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTSTDFLVLNF-NQDLAKELT-SKTQATVVPFSTQEKVDGAYLEDGQLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q V +I+GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 314 KTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
K +V G S + ++ DA A +AT GD ++LSP AS+D +
Sbjct: 373 KKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLLSPANASWDMYA 432
Query: 362 NFEHRGMVF 370
NFE RG +F
Sbjct: 433 NFEVRGDLF 441
>gi|148997231|ref|ZP_01824885.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP11-BS70]
gi|168575358|ref|ZP_02721294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae MLV-016]
gi|307067304|ref|YP_003876270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
pneumoniae AP200]
gi|419470663|ref|ZP_14010522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07914]
gi|419492830|ref|ZP_14032557.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47210]
gi|419503514|ref|ZP_14043185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47760]
gi|421238336|ref|ZP_15694905.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2071247]
gi|421244529|ref|ZP_15701032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2081685]
gi|421313875|ref|ZP_15764465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47562]
gi|147756931|gb|EDK63971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP11-BS70]
gi|183578542|gb|EDT99070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae MLV-016]
gi|306408841|gb|ADM84268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
pneumoniae AP200]
gi|379545379|gb|EHZ10518.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07914]
gi|379594868|gb|EHZ59677.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47210]
gi|379609112|gb|EHZ73853.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47760]
gi|395602923|gb|EJG63064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2071247]
gi|395610187|gb|EJG70266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2081685]
gi|395914375|gb|EJH25219.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47562]
Length = 450
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGEHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|317474535|ref|ZP_07933809.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
eggerthii 1_2_48FAA]
gi|316909216|gb|EFV30896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
eggerthii 1_2_48FAA]
Length = 444
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 183/379 (48%), Gaps = 48/379 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGIPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+ Y K + + + P + L + +K H + A + G E
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLKAHPYPFAAVKE-DGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEIL 252
P + ++ + + G HN +N+ A +S L G+ E + +
Sbjct: 249 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISANLA---GIKKEDIRKALSDF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV- 310
+ HR++ V ++G+ +++DSKATN+ + L + K V++LGG+ K Y+ +
Sbjct: 303 KGVEHRLEKVAT-VRGIQFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTEIE 360
Query: 311 ---------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLSPG 353
LI+ L N L +P V MKDAV A ++A G+ ++LSP
Sbjct: 361 ELVRTKCSALIYLGLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAFQLAKKGETVLLSPC 420
Query: 354 CASFDEFRNFEHRGMVFQE 372
CASFD F+++E RG F++
Sbjct: 421 CASFDLFKSYEDRGDQFKK 439
>gi|293365023|ref|ZP_06611740.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
oralis ATCC 35037]
gi|307702267|ref|ZP_07639227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
oralis ATCC 35037]
gi|291316473|gb|EFE56909.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
oralis ATCC 35037]
gi|307624280|gb|EFO03257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
oralis ATCC 35037]
Length = 450
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 173/369 (46%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKEL-ATKTQATVVPFSTQEKVDGAYLEDGQLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q V +IQGV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 314 KTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
K +V G S + ++ DA A +AT GD ++LSP AS+D +
Sbjct: 373 KKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLLSPANASWDMYA 432
Query: 362 NFEHRGMVF 370
NFE RG +F
Sbjct: 433 NFEVRGDLF 441
>gi|225389931|ref|ZP_03759655.1| hypothetical protein CLOSTASPAR_03681 [Clostridium asparagiforme
DSM 15981]
gi|225044011|gb|EEG54257.1| hypothetical protein CLOSTASPAR_03681 [Clostridium asparagiforme
DSM 15981]
Length = 452
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 180/374 (48%), Gaps = 50/374 (13%)
Query: 28 VMSELDFAAQVIPRSI-KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
++ EL+ A Q S+ ++LA+TGTNGK+T G++L + +V GN+G P + A
Sbjct: 95 IIGELELAYQ---SSLGRLLAITGTNGKTTTTALTGEILKAQFEDVYVVGNIGEPYT-AK 150
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ S V V EVSS+Q+E F P VS +LN+TPDHL RHKTM+NY K
Sbjct: 151 VETMTAES------VTVAEVSSFQLETILD-FRPEVSAILNITPDHLNRHKTMENYIQIK 203
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN--LAWIGAFPGVKI------DTEAKTAS 198
+ + +L + + L E + + W + +K DT S
Sbjct: 204 EAITLNQTEEDAVVLNYDDPVLREFGESGELKPRVIWFSSREKLKDGFCMNGDTIVYCKS 263
Query: 199 -FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E P + V H+M ++GRHNY N V A + + + +GV +E + I R H
Sbjct: 264 GRETPVINV------HSMHLLGRHNYEN--VMAAAAMSMQMGVPLEKITQVIRDFRPVEH 315
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG-------- 309
R++ V R+ GV + +DSK TN +A L + G +I G Y
Sbjct: 316 RIEFV-RERTGVKYYNDSKGTNPDAAIQALRAMPGPTILIAGGYDKNSEYDDWVAEFEGK 374
Query: 310 ----VLIWKT-------LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+LI +T +G + +A ++ +AV + A GD ++LSP CAS+D
Sbjct: 375 VRYLILIGQTRDKIAACAKKHGFTEIMYA-EDLPEAVQVSAVYADTGDYVLLSPACASWD 433
Query: 359 EFRNFEHRGMVFQE 372
F++FE RG +F+E
Sbjct: 434 MFKSFEERGEIFKE 447
>gi|417939990|ref|ZP_12583278.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK313]
gi|343388871|gb|EGV01456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK313]
Length = 450
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 173/369 (46%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTADDFLVLNF-NQDLAKEL-ATKTQATVVPFSTQEKVDGAYLEDGQLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q V +IQGV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQFVD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIIGL 372
Query: 314 KTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
K +V G S + ++ DA A +AT GD ++LSP AS+D +
Sbjct: 373 KKMVILGQSAERVKRAADKADVAYVDATDIADATRKAYELATQGDVVLLSPANASWDMYA 432
Query: 362 NFEHRGMVF 370
NFE RG +F
Sbjct: 433 NFEVRGDLF 441
>gi|376261323|ref|YP_005148043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium sp.
BNL1100]
gi|373945317|gb|AEY66238.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium sp.
BNL1100]
Length = 465
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 179/394 (45%), Gaps = 65/394 (16%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L +++G + SE++ ++ P ++ AVTG++GK+T T + ++L+ G ++GGN
Sbjct: 94 LVQAVENGAELTSEMEVFLKLCPA--QVFAVTGSDGKTTTTTLIYKILSEEGYNCWLGGN 151
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERH 136
+G PL ++ + V+E+SS+Q M I + CP+V+VV N+TP+HL+ H
Sbjct: 152 IGTPL-------LSKIDDVEETDKVVLELSSFQLMTIKD---CPSVAVVTNITPNHLDVH 201
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWIGA-FPG 187
K+++ Y K ++F + +L + N+ N +G R N G +
Sbjct: 202 KSLQEYIDAKKNIFINQKENDKLILNYDNEITKSFNYEARGKYVYFSRLNDLNEGVVYQD 261
Query: 188 VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
KI + S E+ ++ +K+ G HN N A + + V E +
Sbjct: 262 GKIMVKNGNVSTEI--------IEGDKIKIPGVHNIENYMAATAATIEY---VKPETIAK 310
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-------------- 293
HR+++V R++ GV + + S ++ T L K
Sbjct: 311 IATTFNGVEHRIELV-RELSGVKFYNSSIDSSPSRTIAALKTFKNKVILIAGGKDKGIPY 369
Query: 294 -----------KCVILLGGQA---KFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHAR 339
KC++L+G A + Y L + + N I C + ++ V A
Sbjct: 370 DSIGEIIAEKVKCLLLIGATASRIEEAYKNYLQQRDMENEIKIIHC---DSYEEVVEKAY 426
Query: 340 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
A +GD I+LSP SFD F+NFEHRG VF+EL
Sbjct: 427 EQAKSGDCIILSPASTSFDMFKNFEHRGNVFKEL 460
>gi|156973219|ref|YP_001444126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
harveyi ATCC BAA-1116]
gi|166224769|sp|A7MXR3.1|MURD_VIBHB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|156524813|gb|ABU69899.1| hypothetical protein VIBHAR_00900 [Vibrio harveyi ATCC BAA-1116]
Length = 437
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 172/388 (44%), Gaps = 76/388 (19%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN+G
Sbjct: 88 VLAKGAPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVMAKAAGLTVGVGGNIGV 145
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL + + V+E+SS+Q+E + LNL+ DH++R++ M
Sbjct: 146 P---------ALDLLEQDADLYVLELSSFQLE-STLSLKLKAAAFLNLSEDHMDRYEGMS 195
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF- 199
+Y K +F N +L ++ +Q FP DTE +F
Sbjct: 196 DYRQAKLRIFD---NAELAVVNRDDQE----------------TFP----DTETPLVTFG 232
Query: 200 -EVPAVGVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ A G+ + + +K++G+HN N AL VL L DV+
Sbjct: 233 SDEQAYGLEADGNRTWLLDHGQRVIASDELKLVGKHNLAN----ALVVLALLKAADVD-Y 287
Query: 246 NSTIEILRTP---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGG 301
+ ++ L+T HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG
Sbjct: 288 HKSLNALKTYTGLTHRCQVV-ADNRGVKWVNDSKATNIASTIAALSGLESTGKLYLLVGG 346
Query: 302 QAKFGYSGVLIWKTLVNNGLSIPCFAV---------------ANMKDAVNHARRMATNGD 346
K G + L + CF M+D + GD
Sbjct: 347 VGK-GADFTPLKPIFATLNLQLCCFGADGDEFMPLHESATRFDTMEDVIQQISSQLKTGD 405
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQELA 374
++LSP CASFD+F NF RG F LA
Sbjct: 406 MVMLSPACASFDQFDNFMARGDAFAALA 433
>gi|168482914|ref|ZP_02707866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC1873-00]
gi|418161724|ref|ZP_12798415.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17328]
gi|418175491|ref|ZP_12812089.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41437]
gi|418218425|ref|ZP_12845093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP127]
gi|418238261|ref|ZP_12864817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|419459536|ref|ZP_13999472.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02270]
gi|419461816|ref|ZP_14001732.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02714]
gi|172043724|gb|EDT51770.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC1873-00]
gi|353831314|gb|EHE11443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17328]
gi|353844051|gb|EHE24095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41437]
gi|353876622|gb|EHE56471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP127]
gi|353894684|gb|EHE74425.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|379534408|gb|EHY99620.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02270]
gi|379534707|gb|EHY99917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02714]
Length = 450
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 177/366 (48%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A +I ++ I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELA-YLISEAL-IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGAFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|238786721|ref|ZP_04630522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
frederiksenii ATCC 33641]
gi|238725089|gb|EEQ16728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
frederiksenii ATCC 33641]
Length = 438
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 173/354 (48%), Gaps = 50/354 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV T VG+M G + VGGN+G P AL K + Q+ V+
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVP---------ALTLLKQENQLVVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + + +LN+T DH +R+ ++ Y K ++ N K+ ++
Sbjct: 158 ELSSFQLETTSS-LRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYE---NAKVCVVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G G ++ + V V L MK+ GRHN
Sbjct: 213 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWLRVRGEKV---LNTREMKLSGRHN 269
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTWVDDSKATN 279
Y NA A + I +S+++ L T PHR Q+V + GV W++DSKATN
Sbjct: 270 YTNALAALALADAVGI-----PRSSSLKALTTFTGLPHRFQLVF-EHNGVRWINDSKATN 323
Query: 280 LEATCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA-----VANMK 332
+ +T L L+ + +LLGG K +SG + + L + I CF +A ++
Sbjct: 324 VGSTEAALDGLQVDGTLHLLLGGDGKSADFSG--LTRFLQGEHIKIYCFGRDGEQLAELR 381
Query: 333 DAVNH------------ARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
V+ A+ +A GD ++LSP CAS D+FR+FE RG F LA
Sbjct: 382 PEVSQLTETMEQAMVLLAKNLAP-GDMVLLSPACASLDQFRSFEQRGDEFARLA 434
>gi|322387387|ref|ZP_08060997.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
infantis ATCC 700779]
gi|419842690|ref|ZP_14366027.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis ATCC 700779]
gi|321141916|gb|EFX37411.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
infantis ATCC 700779]
gi|385703635|gb|EIG40748.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis ATCC 700779]
Length = 450
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 172/371 (46%), Gaps = 44/371 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + ++
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFED 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N A + K+D E
Sbjct: 203 YVAAKWNIQSNMTAADYLVLNF-NQELAKEL-ATKTNAAVVPFSTLEKVDGAYLEDGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GVD E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNETIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
+Q V + I GV + +DSK+TN+ AT L K +++ GG +
Sbjct: 314 LQFVDQ-INGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G S I + G++ ++ DA A +A GD ++LSP AS+D
Sbjct: 373 KKMVILGQSAERIKRAADKAGVA--YVDATDIADATRKASELAEEGDVVLLSPANASWDM 430
Query: 360 FRNFEHRGMVF 370
+ NFE RG +F
Sbjct: 431 YANFEVRGDLF 441
>gi|312134659|ref|YP_004001997.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
[Caldicellulosiruptor owensensis OL]
gi|311774710|gb|ADQ04197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
[Caldicellulosiruptor owensensis OL]
Length = 455
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 186/375 (49%), Gaps = 42/375 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ A + +S I+A+TGTNGK+T T VG++L + V GN+G P
Sbjct: 91 KKGVEVIGEIELAYRFC-KSKNIVAITGTNGKTTTTTLVGEILKKQHKDVVVCGNIGLPF 149
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I + + + V+E+SS+Q+E KYF P V +LN+TPDHL RH TM+NY
Sbjct: 150 -------IDTVETSSENTIFVLEISSFQLETI-KYFKPMVGCILNITPDHLNRHMTMENY 201
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA----FPGVKIDTEAKTA- 197
K +F ++ T +L + N + I + N+ F V E K
Sbjct: 202 IKAKMRIFENIDETGYTVLNYDNSVTRDLIGLAKGNVIVFSKNKNQFKNVVFIEENKIYF 261
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+FE V+ + ++ + G HN N A+AA++ L GV + + ++ + H
Sbjct: 262 TFEGKTQEVMRKDEIF---IPGEHNLEN-ALAAIACT-LPFGVTKDTIEYVLKNFKGVEH 316
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-----YSGVLI 312
R++ V +I G+ + +DSK TN +A + + +IL+ G G ++G++
Sbjct: 317 RIEFV-TEINGIKFYNDSKGTNTDAAEKAISAFESP--IILIAGGYDKGESFERFAGLIA 373
Query: 313 WKT-----------LVNNGLSIPCFA----VANMKDAVNHARRMATNGDAIVLSPGCASF 357
K + + L + V+N+K+AV + A +GD ++LSP CAS+
Sbjct: 374 KKVKKVFLLGQTKQKIASELEKIGYRNFELVSNLKEAVEKSFEYAKSGDVVLLSPACASW 433
Query: 358 DEFRNFEHRGMVFQE 372
D F N+E RG +F+E
Sbjct: 434 DMFENYEQRGKMFKE 448
>gi|261867478|ref|YP_003255400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Aggregatibacter actinomycetemcomitans D11S-1]
gi|365967276|ref|YP_004948838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Aggregatibacter actinomycetemcomitans ANH9381]
gi|415769378|ref|ZP_11484166.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416083718|ref|ZP_11586886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444347757|ref|ZP_21155580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|261412810|gb|ACX82181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348010529|gb|EGY50566.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348657485|gb|EGY75074.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|365746189|gb|AEW77094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Aggregatibacter actinomycetemcomitans ANH9381]
gi|443548228|gb|ELT57524.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 434
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 186/409 (45%), Gaps = 77/409 (18%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA LQ+G V+ +++ + + I +A+TG+NGKSTV
Sbjct: 61 WLLESDLIVISPGLAVKTPEIQTALQAGVEVVGDIELFCREADKPI--VAITGSNGKSTV 118
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G+ +GGN+G P AL + + V+E+SS+Q+E Y
Sbjct: 119 TTLVAEMAKAAGLRVGMGGNIGIP---------ALSLLNQQHDLYVLELSSFQLE--TTY 167
Query: 118 FCPTV-SVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL-LP--------- 162
V + VLN+T DH+ R+ +++Y K ++++H ++N + L LP
Sbjct: 168 SLKAVAATVLNVTEDHMNRYVDLQDYRHAKLNIYNHCQTAVINAEDALTLPTTQRPQKQV 227
Query: 163 -FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
FG H + +K N ++ A+ EA A E MK+ GRH
Sbjct: 228 SFGENHADYWLKTEN-NKTYLMAYD------EAVLACDE--------------MKLTGRH 266
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
NY NA A G+++ + + + HR Q+ H GV W++DSKATN+
Sbjct: 267 NYMNALAAIALAQA--AGINLTGIRTALCAFGGLEHRFQVAHI-ADGVRWINDSKATNVG 323
Query: 282 ATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCF-----------AVA 329
+T L L+ K +LLGG K G + + + + CF + +
Sbjct: 324 STVAALTGLQVAGKLHLLLGGDGK-GADFSELARLINQPHIYCYCFGRDGKQLAALSSQS 382
Query: 330 NMKDAVNHA----RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+ D + HA R GD ++LSP CAS D+F FE RG F L+
Sbjct: 383 QLFDTMEHAIAAIRPQLQAGDMVLLSPACASLDQFSCFEARGDEFTRLS 431
>gi|421277045|ref|ZP_15727865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SPAR10]
gi|395876326|gb|EJG87402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SPAR10]
Length = 450
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 174/369 (47%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + ++
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFED 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N A + K+D E
Sbjct: 203 YVAAKWNIPSNMTAADYLVLNF-NQELAKEL-ATKTNAAVVPFSTLEKVDGAYLEDGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GVD E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNETIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q V + I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQFVDQ-INGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 314 KTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
K +V G S + ++ DA A +A GD ++LSP AS+D +
Sbjct: 373 KKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELAEEGDVVLLSPANASWDMYA 432
Query: 362 NFEHRGMVF 370
NFE RG +F
Sbjct: 433 NFEVRGDLF 441
>gi|363889519|ref|ZP_09316879.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium CM5]
gi|361966586|gb|EHL19485.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium CM5]
Length = 449
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 166/342 (48%), Gaps = 44/342 (12%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKY 117
+ +G + +V GN+GN A I+L K F + E+SSYQ+E I N
Sbjct: 120 SMLGDIYKKYDENTYVVGNIGN----AVLSSISLAKPKANF---ITELSSYQLETIVN-- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF 177
F ++V+LN+TPDHL RHKTM+NY K ++ + + + +L ++ ++ ++ +
Sbjct: 171 FRVHIAVILNITPDHLSRHKTMENYKNAKYNITKNQIESDFLVLNKDDESIDINLENVKS 230
Query: 178 NLAWIGAFP----GVKIDTEAKT--ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
+ + GV D E + ++ ++ +H ++G+HN N +A +
Sbjct: 231 KVIYFSMKEKLKNGVYYDREKDSIISTINGKEEEIIKAEDIH---LLGKHNIQNT-LACV 286
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+V LD + + I+ + HR+Q V R++ GV +V+DSK TN+++T + +
Sbjct: 287 TVSILD-KIPTALIAEAIKDFKAVKHRLQKV-REVDGVIYVNDSKGTNIDSTLKAIESI- 343
Query: 292 GHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANM 331
+ +++ GG K FG + LI T + ++ N+
Sbjct: 344 DNDIILIAGGYDKMLEFDDLIKGFNGKVKTLLLFGATKKLIRDTALKYDYK-DIISLKNL 402
Query: 332 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
K V A+ +A GD ++LSP CAS+D +++FE RG F EL
Sbjct: 403 KQCVQVAKIIAEKGDVVLLSPACASWDMYQSFEERGDEFIEL 444
>gi|312898962|ref|ZP_07758350.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
micronuciformis F0359]
gi|310620124|gb|EFQ03696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
micronuciformis F0359]
Length = 454
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 171/370 (46%), Gaps = 35/370 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE++ A V + T +TV+T G+++ G + VGGN+G LSE A
Sbjct: 98 VWSEVEVAVHVTDAEFIGITGTNGKTTTTVLT--GEIMKATGRQTVVGGNIGFGLSETAE 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
LPSS V V E+SS+Q+E+ + + +V+LNLTPDHL+RH TM+ Y K
Sbjct: 156 D---LPSS----AVVVAELSSFQLELTSSLKAKS-AVILNLTPDHLDRHHTMEAYGEAKK 207
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F + +L + + + + +I V + A + + G
Sbjct: 208 RIFLNQDKNDYAILNYDDSAVRAMASDLSGTVLYISVHGEVPVGAFAADGNLYIRMEGKD 267
Query: 208 SQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ L + ++ + G+HN N AAL L G ++ + + R HR++ V RD+
Sbjct: 268 TCLCKETDLHLFGKHNIQNCLAAAL--LTYCAGASIDVIRRVLTEFRGVEHRLEWV-RDV 324
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------FGYSGVLIWKTLVNNG 320
+GV + +DSK TN +A+ L GH +++ GG K F TL+ G
Sbjct: 325 KGVPYYNDSKGTNTDASEKALEAFSGH-LILIAGGHDKMTDLTSFMKLAARKVDTLILVG 383
Query: 321 LSIPCFAV----ANMKD----------AVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
+ F A MKD AV A A G ++LSP C+S+D + +FE R
Sbjct: 384 EAADRFEAEARKAGMKDIRRVGFSMEKAVRTAYETAEKGQTVLLSPACSSYDMYHHFEER 443
Query: 367 GMVFQELAFS 376
G F+++ S
Sbjct: 444 GDDFKKIVKS 453
>gi|254446684|ref|ZP_05060159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
bacterium DG1235]
gi|198256109|gb|EDY80418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
bacterium DG1235]
Length = 429
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 174/369 (47%), Gaps = 59/369 (15%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+ ELD A + I+ +TGTNGK+T+ F+ + GIEA+ GN+G P+S
Sbjct: 89 GCEVVPELDLGASLWRG--PIVVITGTNGKTTLTEFITSAFSSAGIEAYACGNIGRPISS 146
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L + +AV EVSS+Q EI + ++ + N DHL+RHK++++Y
Sbjct: 147 LVADDCNLEA------IAVCEVSSFQAEITKRLHADSL-LWTNFDEDHLDRHKSLESY-- 197
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHL-NEAIK--GHRFNLAWIGAFPGVKIDTEAKTASFEV 201
KC L L G+ L +E++K G RFN A P D +S +
Sbjct: 198 FKCKY-------TLTQLQRGDVFLFDESVKEFGERFNY----AIP----DEGLIDSSLDA 242
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ- 260
+GV + + + N + A A +GLD G +EA N+ + PHRM+
Sbjct: 243 LELGVAGTV----FETLPERNTYLIARALWLRMGLDEGELIEAANN----FKKSPHRMEL 294
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-------------Y 307
IV++D G+++ DDSK+TN A L + + V + GG+ K G
Sbjct: 295 IVNQD--GISYWDDSKSTNFHAVYGALKRFE-NPVVWIGGGKNKGGDLPRFVARVASSIS 351
Query: 308 SGVLIWKTLVNNGLS-----IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
S LI +T + +P ++++AV A MA +G I+LSPG AS D F
Sbjct: 352 SAHLIGETSAELAAAFEEHGVPVRVYEDLEEAVAGANAMAESGSNILLSPGFASLDMFEG 411
Query: 363 FEHRGMVFQ 371
+ RG F+
Sbjct: 412 YSQRGEAFR 420
>gi|416073893|ref|ZP_11584356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444338035|ref|ZP_21151921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348007114|gb|EGY47456.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443545839|gb|ELT55581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 434
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 186/409 (45%), Gaps = 77/409 (18%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA LQ+G V+ +++ + + I +A+TG+NGKSTV
Sbjct: 61 WLLESDLIVISPGLAVKTPEIQTALQAGVEVVGDIELFCREADKPI--VAITGSNGKSTV 118
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G+ +GGN+G P AL + + V+E+SS+Q+E Y
Sbjct: 119 TTLVAEMAKAAGLRVGMGGNIGIP---------ALSLLNQQHDLYVLELSSFQLE--TTY 167
Query: 118 FCPTV-SVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL-LP--------- 162
V + VLN+T DH+ R+ +++Y K ++++H ++N + L LP
Sbjct: 168 SLKVVAATVLNVTEDHMNRYVDLQDYRHAKLNIYNHCQTAVINAEDALTLPTTQRPQKQV 227
Query: 163 -FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
FG H + +K N ++ A+ EA A E MK+ GRH
Sbjct: 228 SFGENHADYWLKTEN-NKTYLMAYD------EAVLACDE--------------MKLTGRH 266
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
NY NA A G+++ + + + HR Q+ H GV W++DSKATN+
Sbjct: 267 NYMNALAAIALAQA--AGINLTGIRTALCAFGGLEHRFQVAHI-ADGVRWINDSKATNVG 323
Query: 282 ATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCF-----------AVA 329
+T L L+ K +LLGG K G + + + + CF + +
Sbjct: 324 STVAALTGLQVAGKLHLLLGGDGK-GADFSELARLINQPHIYCYCFGRDGKQLAALSSQS 382
Query: 330 NMKDAVNHA----RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+ D + HA R GD ++LSP CAS D+F FE RG F L+
Sbjct: 383 QLFDTMEHAIAAIRPQLQAGDMVLLSPACASLDQFSCFEARGDEFTRLS 431
>gi|322378367|ref|ZP_08052823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Helicobacter
suis HS1]
gi|321149224|gb|EFX43668.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Helicobacter
suis HS1]
Length = 423
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 174/378 (46%), Gaps = 54/378 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIK------ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
L+ + K + SE D+ + + K I+ ++GTNGK+T +G +L A V
Sbjct: 70 LVVASKHLCSEYDYIKGLWQTNRKHLPFPTIIFISGTNGKTTTARMLGLLLK--SSNAQV 127
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
GGN+G PL + + I KP + V ++E SS+ + N + P + ++L L+ DHL
Sbjct: 128 GGNIGIPLIDL-YTQIKAEQRKPPY-VWILETSSFTLHYTN-HLVPQIYILLPLSQDHLS 184
Query: 135 RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA 194
H+ +NY V KL L F Q +GH F A + P VK
Sbjct: 185 WHENHENY-----------VEAKLKPLSFMQQ------EGHVFLHASLKDHPTVKALINP 227
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV-DVEALNSTIEILR 253
F + + Q+ L KV + A+ ALSV L GV D + LN+ +
Sbjct: 228 PNLIFYQDSKHLAKQMGLQISKVRFEEPFLLDALLALSVAKLYSGVADYDLLNTYM---- 283
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW 313
PHR++I Q TWVDDSKATN++AT L KG ++LGG K G ++
Sbjct: 284 IQPHRIEIFLDQDQN-TWVDDSKATNIDATLKALDRFKGCYIHLILGGDTK-GMDLKPLF 341
Query: 314 KTLVNNGLSIPCFAVA-------------------NMKDAVNHARRMATNGDAIVLSPGC 354
+ L + + I V+ +++ AV H ++ G +LSP
Sbjct: 342 EVLAHMQVEIYAIGVSAPMVMQMAQDYHIRAHLCHDLRIAVEHIKQNLRPGQIGMLSPSA 401
Query: 355 ASFDEFRNFEHRGMVFQE 372
AS D+F +++HRG+ F+E
Sbjct: 402 ASLDQFASYKHRGITFKE 419
>gi|402703648|ref|ZP_10851627.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
helvetica C9P9]
Length = 467
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 172/361 (47%), Gaps = 51/361 (14%)
Query: 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
+++K +A+TGTNGKST + +LN G++ V GN+G P +A +SK +
Sbjct: 102 KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQA-------KASKDGY- 153
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
V+E+SS+Q+++ K F ++V+LN+TPDHL+R++ M Y K +F+ M +
Sbjct: 154 --VLELSSFQLDLV-KTFTAKIAVLLNITPDHLDRYQDMTGYIAAKSKIFNRMDKESYAV 210
Query: 161 LPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
+ N + E + R L F KI + + +S N
Sbjct: 211 INIDNDYCREIFMLLQQEQRIKLI---PFSVTKILENGISVVDDKIKDNDISYKLSFNKN 267
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
+ G HN N +AA + IGV+ + + I ++ PHRMQ + I +++ +DSK
Sbjct: 268 LQGLHNCEN--IAASYAVAKIIGVEPKKILEYISSFQSLPHRMQYIGS-INNISFYNDSK 324
Query: 277 ATNLEATCTGLMDLKGHKCVI-LLGGQAK-------------------FGYSGVLIWKTL 316
ATN + + +K + L+GG K +G + + T+
Sbjct: 325 ATN---AISAVQSIKALDNIYWLVGGIPKESGIEEIKPYFSKIKKAYFYGQAKEMFADTV 381
Query: 317 VNNGLSIPCFAVANMKDAVNHARRMATNGDA----IVLSPGCASFDEFRNFEHRGMVFQE 372
N + C +++ A + A + A +A I+L+P C+S+D+F+NFE RG +F +
Sbjct: 382 KNIVDFVIC---DDLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKNFEERGELFIK 438
Query: 373 L 373
L
Sbjct: 439 L 439
>gi|416103052|ref|ZP_11589107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444345346|ref|ZP_21153367.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|348008323|gb|EGY48599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|443543103|gb|ELT53370.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 434
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 186/409 (45%), Gaps = 77/409 (18%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA LQ+G V+ +++ + + I +A+TG+NGKSTV
Sbjct: 61 WLLESDLIVISPGLAVKTPEIQTALQAGVEVVGDIELFCREADKPI--VAITGSNGKSTV 118
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G+ +GGN+G P AL + + V+E+SS+Q+E Y
Sbjct: 119 TTLVAEMAKAAGLRVGMGGNIGIP---------ALSLLNQQHDLYVLELSSFQLE--TTY 167
Query: 118 FCPTV-SVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL-LP--------- 162
V + VLN+T DH+ R+ +++Y K ++++H ++N + L LP
Sbjct: 168 SLKAVAATVLNVTEDHINRYVDLQDYRHAKLNIYNHCQTAVINAEDALTLPTTQRPQKQV 227
Query: 163 -FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
FG H + +K N ++ A+ EA A E MK+ GRH
Sbjct: 228 SFGENHADYWLKTEN-NKTYLMAYD------EAVLACDE--------------MKLTGRH 266
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
NY NA A G+++ + + + HR Q+ H GV W++DSKATN+
Sbjct: 267 NYMNALAAIALAQA--AGINLTGIRTALCAFGGLEHRFQVAHI-ADGVRWINDSKATNVG 323
Query: 282 ATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCF-----------AVA 329
+T L L+ K +LLGG K G + + + + CF + +
Sbjct: 324 STVAALTGLQVAGKLHLLLGGDGK-GADFSELARLINQPHIYCYCFGRDGKQLAALSSQS 382
Query: 330 NMKDAVNHA----RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+ D + HA R GD ++LSP CAS D+F FE RG F L+
Sbjct: 383 QLFDTMEHAIAAIRPQLQAGDMVLLSPACASLDQFSCFEARGDEFTRLS 431
>gi|408370293|ref|ZP_11168071.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Galbibacter sp.
ck-I2-15]
gi|407744371|gb|EKF55940.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Galbibacter sp.
ck-I2-15]
Length = 443
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 192/378 (50%), Gaps = 46/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
LL+ G V+SE++FA++ ++ +TG+NGK+T +L+ G++ + GN+G+
Sbjct: 81 LLELGVPVISEIEFASRYT--DAMLIGITGSNGKTTTTMLTNHLLSAGGLKVGMAGNIGD 138
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHK-T 138
++ ++ V+E+SS+Q++ I + F P +++V N+TPDHL+R+
Sbjct: 139 SFAQMV--------AQRDLDYYVLEISSFQLDGIED--FAPHIAIVTNITPDHLDRYDYK 188
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+NY +K + + + + + + E ++ ++ + A + F I+ + + +
Sbjct: 189 FENYIASKFRITMNQTEEDYLIYDYDDPVIAEWLQNNKIH-ARLLPFS---IEKKLEQGA 244
Query: 199 FEVPAVGVVS------QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ V++ Q+ + + G+HN NA +AA +V L + + + ++E
Sbjct: 245 YLEDNKIVITIDKHHFQMSTDTLALEGKHNVKNA-MAASTVAQL-LKIRKATIRESLENF 302
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI 312
+ HR++ V + IQ V +++DSKATN+ AT L D V ++GGQ K L+
Sbjct: 303 QGAEHRLEKVLK-IQNVHYINDSKATNVNATYYAL-DSMSTPTVWIVGGQDKGNDYLTLM 360
Query: 313 ------WKTLV----NNGLSIPCFA--------VANMKDAVNHARRMATNGDAIVLSPGC 354
K +V +N I F +M+DAV ++ +A GD+++LSP C
Sbjct: 361 PLVREKVKAIVCLGWDNAKIIETFGSVVEFIVETTSMEDAVRVSKEVAQPGDSVLLSPAC 420
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F N++ RG F+E
Sbjct: 421 ASFDLFLNYQDRGDQFKE 438
>gi|258546150|ref|ZP_05706384.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Cardiobacterium
hominis ATCC 15826]
gi|258518575|gb|EEV87434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Cardiobacterium
hominis ATCC 15826]
Length = 436
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 162/346 (46%), Gaps = 42/346 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
+LAVTG+NGKSTVVT + Q LNH G +A + GN+G P+ +A F A V+
Sbjct: 104 VLAVTGSNGKSTVVTLLAQALNHAGHKAKLCGNIGRPVLDALFDGEAA-------DCYVI 156
Query: 105 EVSSYQMEI-PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SSYQ+E+ P+ Y P V+ VLN+TPDHL+R+ YA K +L + + +L
Sbjct: 157 ELSSYQLELCPSLY--PRVAAVLNVTPDHLDRYDDFAAYAAAKANLVRQ---SSICILN- 210
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
G+ A+ N+ + G + E A+ L+ +++ G HN+
Sbjct: 211 GDDEACVAMAEDGQNIIYYGTSATLPNRVEGGKIWLHGHAL-----LETARLRLGGAHNH 265
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
N L + GV + + S +E PHRMQ+V + GV W DDSKATN+
Sbjct: 266 ANILCTLLMLEA--YGVAPQQVLSALETFAGLPHRMQLVSEE-NGVRWYDDSKATNI-GA 321
Query: 284 CTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVAN------------- 330
+ V++ GG K +L + N + V N
Sbjct: 322 AAAALAGIDGAVVLIAGGVGKNQDFSLLARELQQANLRGVLLIGVDNRDMAAAFTAAGIA 381
Query: 331 ------MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
M AV AR +A GD+++L+P ASFD++ ++ RG F
Sbjct: 382 FEDCGTMDKAVARARALAQAGDSVLLAPATASFDQYSGYDARGDAF 427
>gi|418148133|ref|ZP_12784898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13856]
gi|353812808|gb|EHD93041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13856]
Length = 450
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDK---NTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|402494448|ref|ZP_10841189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aquimarina
agarilytica ZC1]
Length = 451
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 179/374 (47%), Gaps = 53/374 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGGNLGNPLSEAA 86
V+SE++FA + S+ + +TG+NGK+T G +L+ G+E + GN+G+ ++A
Sbjct: 95 VISEIEFAVKYTKASV--VGITGSNGKTTTTMLTGHVLSS-GMEGVTMAGNIGDSFAKAV 151
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145
L F V+E+SS+Q++ FCP ++++ NL+PDHL+R++ + Y
Sbjct: 152 -----LDDQTNTF---VLELSSFQLDGVED-FCPKIAILTNLSPDHLDRYEYSYDKYIAA 202
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---------GVKIDTEAKT 196
K L + + + ++ + +K H+ FP GV I
Sbjct: 203 KFRLIKNQTHNDYFIYDADDKDIQNYLKKHK---PKAQCFPFSLEKELEQGVFIKNNHIV 259
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
S ++S+ ++ + GRHN NA AA+S IG+ + + ++ +
Sbjct: 260 ISMNNEQDIIISE---SSLSLKGRHNTKNAMAAAMSARL--IGIRKQTIRESLTNFQGVE 314
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTL 316
HR+++V + I V +++DSKATN+ AT L +K V ++GG K G ++K +
Sbjct: 315 HRLEMVLK-INNVQYINDSKATNVNATYFALEAVKT-PVVWIVGGVDK-GNDYSELYKLV 371
Query: 317 VNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASF 357
+I C V N M++AV A + D ++LSP CASF
Sbjct: 372 NEKVKAIICLGVDNSRIVASFENCVDTIVETQSMQEAVKIAYALGERNDTVLLSPCCASF 431
Query: 358 DEFRNFEHRGMVFQ 371
D F+N+E RG F+
Sbjct: 432 DLFKNYEDRGDQFK 445
>gi|218131850|ref|ZP_03460654.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
gi|217986153|gb|EEC52492.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
eggerthii DSM 20697]
Length = 444
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 183/378 (48%), Gaps = 46/378 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+GN
Sbjct: 82 LKEKGIPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL + K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+ Y K + + + P + L + +K H + A + G E
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLKAHPYPFAAVKE-DGAIAYVE 248
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
P + ++ + + G HN +N+ A +S L G+ E + + +
Sbjct: 249 DGEVEINEP---IAFNMEQEELALHGTHNLYNSLAAGISA-NL-AGIKKEDIRKALSDFK 303
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGV-- 310
HR++ V ++G+ +++DSKATN+ + L + K V++LGG+ K Y+ +
Sbjct: 304 GVEHRLEKVAT-VRGIQFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDYTEIEE 361
Query: 311 --------LIWKTLVNNGL-------SIPCFAV-ANMKDAVNHARRMATNGDAIVLSPGC 354
L++ L N L +P V MKDAV A ++A G+ ++LSP C
Sbjct: 362 LVRTKCSALVYLGLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAFQLAKKGETVLLSPCC 421
Query: 355 ASFDEFRNFEHRGMVFQE 372
ASFD F+++E RG F++
Sbjct: 422 ASFDLFKSYEDRGDQFKK 439
>gi|289549042|ref|YP_003474030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
DSM 14484]
gi|289182659|gb|ADC89903.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
DSM 14484]
Length = 422
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 172/380 (45%), Gaps = 62/380 (16%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G V+ EL+ A + + +A+TGT+GKST +L GGN+G P
Sbjct: 65 VRKGIEVIGELELAWRFFEGTA--IAITGTDGKSTTTRLSYLILRSYFSHVEEGGNIGVP 122
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S L PK +AV+EVSS+Q + K F P V LN + DHL+ H +++
Sbjct: 123 FS-------YLVMKNPK-ALAVLEVSSFQGKT-LKTFRPHVGAFLNFSEDHLDWHPDLRD 173
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID----TEAKTA 197
Y +K ++FS LL + + R G VK D +E K
Sbjct: 174 YLWSKYNIFSRQTPEDWILLNGTQKVTRDTPSPARKVFFGDGCEAHVKEDGAYWSEEKLF 233
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
S E ++K++G+HN +NA VA V+G +GV + + + R PH
Sbjct: 234 SVE-------------DIKLIGKHNLYNALVAC--VIGRIMGVPTDRMKEVLRDFRGLPH 278
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS--------- 308
R+++V D GV +DSK+T A L + + +++ GG+ K G S
Sbjct: 279 RLELVG-DFGGVLVYNDSKSTTPNALQAALGSMPDGRVILIAGGKDK-GASFEHLCPLVT 336
Query: 309 -----GVLI----------WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
VLI WK L+ +++ +A+ A+R A GD ++ SP
Sbjct: 337 QKVKHAVLIGEAKRRIADAWKGCTQVSLA------SSLDEAIRMAQREAKPGDILLFSPA 390
Query: 354 CASFDEFRNFEHRGMVFQEL 373
C+SFD F N+E RG F++L
Sbjct: 391 CSSFDMFSNYEERGETFKKL 410
>gi|284008378|emb|CBA74784.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Arsenophonus
nasoniae]
Length = 436
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 173/352 (49%), Gaps = 49/352 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV VG+M +GGN+G P AL + + V+
Sbjct: 107 IVAITGSNGKSTVTALVGEMAKAANWRVAIGGNIGTP---------ALTLLAKDYDLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + V+ +LN+T DH++R+ + ++ Y + K +++ K+ ++
Sbjct: 158 ELSSFQLETTSS-LKAAVATILNVTEDHMDRYPSGIQQYRVAKLRIYA---GAKICII-- 211
Query: 164 GNQHLNEA--IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
NQ + ++G G G D + T E+ G + ++++G+H
Sbjct: 212 -NQQDPQTWPLRGRDARCISFGINSG---DYQLNTRCQELQIKGQ-PIINTAEIRLVGQH 266
Query: 222 NYHNAAVAALSVLGLDI--GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
NY N A ++I + AL + PHR Q+VH+ + G+ WV+DSKATN
Sbjct: 267 NYLNGVAALALADAVNIPRKASLAALTQYAGL----PHRCQLVHQHL-GIQWVNDSKATN 321
Query: 280 LEATCTGLMDLK-GHKCVILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA-----VANMK 332
+ +T L L+ +LLGG+ K +S + + + N + + CF +A +K
Sbjct: 322 VGSTEAALKGLQVAGTLYLLLGGEGKSADFSPLKPYISAKN--IKLCCFGRDGYQLAQLK 379
Query: 333 ------DAVNHARRMAT----NGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
D + R+ GD ++LSP CASFD+FRNFE RG F +LA
Sbjct: 380 ANSLLLDTMEQCLRVIVPELKAGDMVLLSPACASFDQFRNFEQRGERFSQLA 431
>gi|350564698|ref|ZP_08933515.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalimicrobium
aerophilum AL3]
gi|349777717|gb|EGZ32080.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalimicrobium
aerophilum AL3]
Length = 448
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 109/392 (27%), Positives = 179/392 (45%), Gaps = 58/392 (14%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ L Q G ++ +++ A+ S I+ +TG+NGKSTV + +L G
Sbjct: 70 IDLRQPWLQVFRQKGIDIIGDIELFARAA--SAPIIGITGSNGKSTVTSLTASLLTAGGY 127
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT-VSVVLNLT 129
+ +GGN+G +AA + + + V V+E+SS+Q++ Y T S VLN+
Sbjct: 128 KTGMGGNIG----KAALDLLL---EEQNYDVFVLELSSFQLD--TTYSLHTCASTVLNIC 178
Query: 130 PDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK 189
DHL+R+ M Y +K ++ +T+L ++P L+E N+ F G++
Sbjct: 179 EDHLDRYDGMDAYIQSKNTIYQ---DTELAVMP-----LDEPTPFWVPNITPKQYF-GLQ 229
Query: 190 IDTEAKTASFEVP-------AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
A+ EV A G + + +K+ H NA + V DI D
Sbjct: 230 PPRSARDWGIEVDLDGLSYLAQGEKRLMPVSELKLQAPHQLLNALASLALVQEFDI--DD 287
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVIL 298
+ + PHR + V + Q +TW++DSK TN+ AT T + + + K V+L
Sbjct: 288 TIVQQVLRNFAGLPHRTEWVAQFNQ-ITWINDSKGTNVGATLTAVKSMGSAIQPAKLVLL 346
Query: 299 LGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHA 338
GG AK +G +++ + +PC V + +AVN A
Sbjct: 347 AGGDAKGADMAPLAQPLAEFARAAIVYGRDAAQLYQAWSAH---LPCHHVQTLDEAVNLA 403
Query: 339 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+A GD ++LSP CAS D+F N++HRG F
Sbjct: 404 ASLAQAGDTVLLSPACASLDQFDNYQHRGRHF 435
>gi|326797502|ref|YP_004315321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
sp. 21]
gi|326548266|gb|ADZ76651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
sp. 21]
Length = 457
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 178/373 (47%), Gaps = 50/373 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ E++FAA+ K + +TG+NGKST +L GI + GN+G
Sbjct: 100 VIGEIEFAARYT--DAKTVCITGSNGKSTTTMLTYHILQKAGINVGLAGNIGKSF----- 152
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-TMKNYALT 145
AL + +++V V+E+SS+ ++ + Y F ++V+LN+TPDHL+R+ M+NY +
Sbjct: 153 ---ALQVATEQYEVYVLEISSFMLD--DMYDFRADIAVLLNITPDHLDRYDYKMENYVNS 207
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K + + + + + N+A+ N +P + E + ++
Sbjct: 208 KFRITRNQRENDIFIYCKDDPETNKALTAKEINATM---YP-FSLTEEVQYGAYLNEEKE 263
Query: 206 VVSQL--------QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+V L ++++ + G+HN +N + + ++ E++ ++ PH
Sbjct: 264 IVITLPNQERFIMSINDLALQGKHNVYNNMASGIVAKVWEL--RNESIRESMGDFVNIPH 321
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLV 317
R++ V + I G+ +++DSKATN+ + L L G K V+++GG K G ++ + +
Sbjct: 322 RLEHVTK-ISGIEFINDSKATNVNSVWYALESLPG-KIVLIMGGVDK-GNDYSMLRELVQ 378
Query: 318 NNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFD 358
+ I C N M +AV A +A GD ++LSP CASFD
Sbjct: 379 SKVRGIVCLGKDNRNIHNAFEADTDVIVNTQTMSEAVQIAYHIAQKGDTVLLSPACASFD 438
Query: 359 EFRNFEHRGMVFQ 371
F+N+E RG F+
Sbjct: 439 LFKNYEDRGDQFK 451
>gi|395788418|ref|ZP_10467982.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bartonella
birtlesii LL-WM9]
gi|395408335|gb|EJF74946.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bartonella
birtlesii LL-WM9]
Length = 466
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 168/364 (46%), Gaps = 54/364 (14%)
Query: 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKP--K 98
R + +A+TGTNGKST + +L +G + VGGN+G A+ + KP K
Sbjct: 119 RDVPFIAITGTNGKSTTTVLLAYLLEQMGYDVQVGGNIGT----------AILTLKPFVK 168
Query: 99 FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158
++ V+E SS+Q+++ PT+ V+LNLTPDH++RH +Y K L + +
Sbjct: 169 KRIYVIECSSFQIDL-TPSLQPTIGVLLNLTPDHIDRHGNFAHYVQAKKRLVFGAAHAVI 227
Query: 159 GLLPFGNQHLNEAI--KGHRFNLAWIGAF--PGVKIDTEAKTASFEVPAVGVVSQLQLHN 214
+ Q L + + +GH F G D EAK S +++ L +
Sbjct: 228 SVDDAVCQDLYQQLLDEGHSVEAVSKKNFVESGFYAD-EAKLFSVRQGRRQMLADLA--S 284
Query: 215 MKVM-GRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
M + G HN NA A+A L VL + +N + + HRMQ VH+ + V +
Sbjct: 285 MPALRGSHNAQNALMALATLQVL----KITSPYMNKHLASYKGLAHRMQQVHK-MGSVLF 339
Query: 272 VDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNN------------ 319
++DSKATN +AT L H ++GGQAK G G+ + +
Sbjct: 340 INDSKATNADATAPALSAF--HDIFWIVGGQAKEG--GIDSLRVFFHKIHKAYLIGSAAE 395
Query: 320 ------GLSIPCFAVANMKDAVNH----ARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 369
G S P +++AV+ A R ++ SP CAS+D+F+NFE RG
Sbjct: 396 EFADVIGSSFPFSMSLTLENAVHEAFVDAMRCQAKEVVVLFSPACASYDQFKNFEERGEA 455
Query: 370 FQEL 373
F L
Sbjct: 456 FVSL 459
>gi|168183596|ref|ZP_02618260.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
botulinum Bf]
gi|182673240|gb|EDT85201.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
botulinum Bf]
Length = 458
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/388 (27%), Positives = 174/388 (44%), Gaps = 63/388 (16%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+SG + SE++ + P K+ +TG++GK+T T V +ML G +VGGN+G PL
Sbjct: 99 ESGAYITSEMEEFIKYCPA--KVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
A + + V+E+SS+Q+ + P +S++ NL+P+HL+ HK + Y
Sbjct: 157 -------FANIEEMKEDHMVVLELSSFQLMTMD--VSPEISLITNLSPNHLDVHKDFEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLP--------FGNQHLNEAIKGHRFNLAWIGAF-PGVKIDTE 193
K ++F + + L +L N+ L + +K + GA+ K+ +
Sbjct: 208 VWAKKNIFKYQSSNNLLVLNKDDDLTNGMENEALGDVLKFSLVEKVYNGAYLSNNKLTMQ 267
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
K ++K+ GRHN N +AA ++ + +D ++
Sbjct: 268 GKEVC------------DSKDIKLKGRHNIANL-LAAFCMVNKYVSID--SMKYVATNFS 312
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------A 303
HR + + R++ GV + +DS A++ T GL + VIL+ G A
Sbjct: 313 GVEHRCEFI-REVNGVKYYNDSIASSPSRTLAGLNSF--ERPVILIAGGYDKKIPFKPLA 369
Query: 304 KFGYSGVLIW---------------KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
+ GY + I K + + I V +M++AV A MA GD I
Sbjct: 370 EGGYDKIKILILMGDTKNKIKSAFEKVISHKKCEIEIVIVNSMEEAVKVADNMAEKGDII 429
Query: 349 VLSPGCASFDEFRNFEHRGMVFQELAFS 376
LSP CASFD + NFE RG F+ + S
Sbjct: 430 TLSPACASFDMYPNFEIRGNEFKNIVNS 457
>gi|402839214|ref|ZP_10887707.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacteriaceae
bacterium OBRC8]
gi|402270753|gb|EJU20011.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacteriaceae
bacterium OBRC8]
Length = 449
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 168/342 (49%), Gaps = 44/342 (12%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKY 117
+ +G + +V GN+GN A I+L +K F + E+SSYQ+E I N
Sbjct: 120 SMLGDIYKKYDENTYVVGNIGN----AVLSSISLAKTKANF---ITELSSYQLETIVN-- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF 177
F ++V+LN+TPDHL RHKTM+NY K ++ + + +L ++ ++ ++ +
Sbjct: 171 FRVHIAVILNITPDHLSRHKTMENYKNAKYNITKNQIEGDFLVLNKDDESIDINLENVKS 230
Query: 178 NLAWIGAFP----GVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAAL 231
+ + GV DTE + + + + +++ ++ ++G+HN N +A +
Sbjct: 231 KVIYFSMKEKLKNGVYYDTEKGSI---ISTINRKEEEIIKVKDIHLLGKHNIQNT-LACV 286
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+V LD + + I+ + HR+Q V R++ V +V+DSK TN+++T + +
Sbjct: 287 TVSILD-NIPTALIAEAIKDFKAVKHRLQKV-REVDDVIYVNDSKGTNIDSTLKAIESI- 343
Query: 292 GHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANM 331
+ +++ GG K FG + LI T + ++ N+
Sbjct: 344 DNDIILIAGGYDKMLEFDDLIKGFNGKVKTLLLFGATKKLIRDTALKYDYK-DIISLKNL 402
Query: 332 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
K V A+ +A GD ++LSP CAS+D +++FE RG F EL
Sbjct: 403 KQCVQIAKIIAQKGDVVLLSPACASWDMYQSFEERGDEFIEL 444
>gi|417698122|ref|ZP_12347295.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41317]
gi|419452867|ref|ZP_13992841.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP03]
gi|419505641|ref|ZP_14045302.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49194]
gi|332202563|gb|EGJ16632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41317]
gi|379607555|gb|EHZ72301.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49194]
gi|379627451|gb|EHZ92063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP03]
Length = 450
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 177/366 (48%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A +I ++ I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LVKGIPVLTEVELA-YLISEAL-IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGAFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|410644638|ref|ZP_11355114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
agarilytica NO2]
gi|410135812|dbj|GAC03513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
agarilytica NO2]
Length = 441
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 174/386 (45%), Gaps = 54/386 (13%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ + +++G +V+ +++ A + +LAVTG+NGKSTV T +M G
Sbjct: 73 LSLQTAAIQEAIEAGVQVVGDIELFAMF--NNTPVLAVTGSNGKSTVATLAYEMCMAGGK 130
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+A +GGN+G P AL + + V+E+SS+Q+E P V+ +LNL+
Sbjct: 131 KALLGGNIGTP---------ALELLEKDADIIVLELSSFQLE-STHTLRPLVACMLNLSD 180
Query: 131 DHLERHKTMKNYALTKCHL-----FSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIGA 184
DHL+RH M +Y K + FS P N + + L+W
Sbjct: 181 DHLDRHGDMLSYQRAKLRIYKDARFSVCNRDDAATWPMTINPDVMFGLSSSERGLSWDKD 240
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
+ +D +A L ++G HN N + A + + + G+++EA
Sbjct: 241 TAQLLLDGKA--------------YLDSQACMLVGEHNMLN--IQAATAMTMLAGIELEA 284
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLG 300
+ S HR Q V V W++DSKATN+ AT + L KG K +++ G
Sbjct: 285 IKSAAMNFAGLAHRCQTVAMS-SNVRWINDSKATNVGATIAAIDGLAPTCKG-KLILIAG 342
Query: 301 GQAKFGYSGVLIWK------TLVNNGLSIPCFA--------VANMKDAVNHARRMATNGD 346
G K L + L+ G P A V N++DAV A +A+
Sbjct: 343 GDGKGADFSPLEERFNHQVSELITLGKDGPELAKLKPSSHQVVNLEDAVQLAASLASKDS 402
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQE 372
++LSP CAS D F+N++ RG +F++
Sbjct: 403 TVLLSPACASLDMFKNYQQRGELFEQ 428
>gi|237796978|ref|YP_002864530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
botulinum Ba4 str. 657]
gi|259509786|sp|C3KVT7.1|MURD_CLOB6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|229261229|gb|ACQ52262.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
botulinum Ba4 str. 657]
Length = 458
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/388 (27%), Positives = 174/388 (44%), Gaps = 63/388 (16%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+SG + SE++ + P K+ +TG++GK+T T V +ML G +VGGN+G PL
Sbjct: 99 ESGAYITSEMEEFIKYCPA--KVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
A + + V+E+SS+Q+ + P +S++ NL+P+HL+ HK + Y
Sbjct: 157 -------FANIEEMKEDHMVVLELSSFQLMTMD--VSPEISLITNLSPNHLDVHKDFEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLP--------FGNQHLNEAIKGHRFNLAWIGAF-PGVKIDTE 193
K ++F + + L +L N+ L + +K + GA+ K+ +
Sbjct: 208 VWAKKNIFKYQSSNNLLVLNKDDDLTNGMENEALGDVLKFSLVEKVYNGAYLSNNKLTMQ 267
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
K ++K+ GRHN N +AA ++ + +D ++
Sbjct: 268 GKEVC------------DSKDIKLKGRHNIANL-LAAFCMVNKYVSID--SMKYVATNFS 312
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------A 303
HR + + R++ GV + +DS A++ T GL + VIL+ G A
Sbjct: 313 GVEHRCEFI-REVNGVKYYNDSIASSPSRTLAGLNSF--ERPVILIAGGYDKKIPFKPLA 369
Query: 304 KFGYSGVLIW---------------KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
+ GY + I K + + I V +M++AV A MA GD I
Sbjct: 370 EGGYDKIKILILMGDTKNKIKSAFEKVISHKKCEIEIVIVNSMEEAVKVADNMAEKGDII 429
Query: 349 VLSPGCASFDEFRNFEHRGMVFQELAFS 376
LSP CASFD + NFE RG F+ + S
Sbjct: 430 TLSPACASFDMYPNFEIRGNEFKNIVNS 457
>gi|167745317|ref|ZP_02417444.1| hypothetical protein ANACAC_00008 [Anaerostipes caccae DSM 14662]
gi|167655038|gb|EDR99167.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerostipes
caccae DSM 14662]
Length = 468
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 187/374 (50%), Gaps = 38/374 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+ SG+ V SE++ A QV +I A+TGTNGK+T VG+++ + +V GN+G
Sbjct: 103 FMDSGRPVWSEIELAYQV--SRGQIAAITGTNGKTTTTALVGEIMKCFYSDVYVVGNIGT 160
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P + +AL + V V E+SS+Q+E F P VS VLN+TPDHL+RH T++
Sbjct: 161 P-----YTSVALDTKDE--SVIVAEISSFQLETIQD-FRPQVSAVLNITPDHLDRHGTVE 212
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
YA TK + + ++ +L + + + + + ++ K SF
Sbjct: 213 VYARTKESIGKNQTGDQVMVLNYEDPVTRNMAERANARVVFFSLDHELEEGVYFKDGSFM 272
Query: 201 VPAVGVVSQLQLH-NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ V + ++ ++G HNY N +AA++V +GV E + + + HR+
Sbjct: 273 LAENKTVQTICTEADINLLGGHNYENI-LAAIAVSHY-MGVPAEQIRKGVSGFKGVEHRI 330
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG----QAKF---------- 305
+ V I+ V + +DSK TN +A G+ + ++ L+GG +A++
Sbjct: 331 EYVDT-IKDVAYYNDSKGTNTDAAIKGIKAM--NRPTFLIGGGYDKKAEYDDWIEAFDGK 387
Query: 306 -------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
G + I KT +G S + V +++AV +A + A +GDA++LSP CAS+
Sbjct: 388 VKELILLGATAEKIGKTAEAHGFSRIVY-VDTLEEAVEYASKHAVSGDAVLLSPACASWG 446
Query: 359 EFRNFEHRGMVFQE 372
F N+E RG F+E
Sbjct: 447 MFPNYEVRGDRFKE 460
>gi|33240888|ref|NP_875830.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|60390538|sp|Q7VAM1.1|MURD_PROMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|33238417|gb|AAQ00483.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 470
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 184/386 (47%), Gaps = 48/386 (12%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L + G V SE++ A + + ++ + +TGTNGK+TV + +LN+ IE+ +GGN
Sbjct: 93 LNQLRKRGIIVESEINLAWRAL-KNTPWVGITGTNGKTTVTHMLNHVLNNSFIESTIGGN 151
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +E A KPK+ ++E+SSYQ+E + P + + LTPDHLERH
Sbjct: 152 VGKAATEIALALRKSTKHKPKW--LIMELSSYQIETAPE-ISPEIGIWTTLTPDHLERHG 208
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA---WIGAFPGVKIDTEA 194
+++NY K L + N+ + + +++L++ +R NL W+ A K ++
Sbjct: 209 SLENYFAIKRTL---IANSSIRIYNADDKYLSK----NRLNLPKGLWVSA---QKYNSNI 258
Query: 195 KTASFEVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
F + + G+V + +++ G HN N + +S IG+ A+ + +
Sbjct: 259 NQLDFWISSNGMVIEQGNELFHSSALQLPGDHNLQN--LLLVSAAARKIGLSGMAIENAL 316
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----- 304
HR++ V + I + +DSKATN ++ GL +++ GG +K
Sbjct: 317 ISFAGITHRLEKVDKIID-IDIFNDSKATNFDSAEIGLKATSA-PVILIAGGLSKQGIYL 374
Query: 305 ---------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN--GDA 347
G S V + + ++G + AV+ A ++ +
Sbjct: 375 DWINQIKEKVCAVILIGESRVKLQHLIKSHGFRGEIVCYEKLDKAVDKAIKLGVKFRAKS 434
Query: 348 IVLSPGCASFDEFRNFEHRGMVFQEL 373
I+ SPGCASFD++ NFE RG F++L
Sbjct: 435 ILFSPGCASFDQYSNFEERGDHFKKL 460
>gi|307706272|ref|ZP_07643086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK321]
gi|307618363|gb|EFN97516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK321]
Length = 450
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LSKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M T +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTATDFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V +I+GV + +DSK+TN+ AT L K +++ GG + L+ K +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|303254732|ref|ZP_07340833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS455]
gi|303259957|ref|ZP_07345931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP-BS293]
gi|303261363|ref|ZP_07347311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP14-BS292]
gi|303264029|ref|ZP_07349950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS397]
gi|303266343|ref|ZP_07352233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS457]
gi|303268810|ref|ZP_07354598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS458]
gi|387758960|ref|YP_006065938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae INV200]
gi|410476145|ref|YP_006742904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae gamPNI0373]
gi|418086436|ref|ZP_12723607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47033]
gi|418093534|ref|ZP_12730664.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49138]
gi|418139005|ref|ZP_12775836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13338]
gi|418141294|ref|ZP_12778107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13455]
gi|418152433|ref|ZP_12789173.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16121]
gi|418164032|ref|ZP_12800706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17371]
gi|418180046|ref|ZP_12816619.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41688]
gi|418199624|ref|ZP_12836071.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47976]
gi|418201974|ref|ZP_12838404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA52306]
gi|419455102|ref|ZP_13995062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP04]
gi|419514249|ref|ZP_14053877.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae England14-9]
gi|419518503|ref|ZP_14058110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA08825]
gi|421267901|ref|ZP_15718773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR95]
gi|421284916|ref|ZP_15735693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60190]
gi|421297297|ref|ZP_15748000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA58581]
gi|421306880|ref|ZP_15757526.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60132]
gi|444388098|ref|ZP_21186090.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS125219]
gi|444390179|ref|ZP_21188094.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS70012]
gi|444391680|ref|ZP_21189492.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS81218]
gi|444394188|ref|ZP_21191741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0002]
gi|444397139|ref|ZP_21194626.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0006]
gi|444403562|ref|ZP_21200642.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0008]
gi|444404509|ref|ZP_21201460.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0009]
gi|444408812|ref|ZP_21205442.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0010]
gi|444418035|ref|ZP_21214029.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0360]
gi|444419135|ref|ZP_21215017.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0427]
gi|301801549|emb|CBW34241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae INV200]
gi|302598272|gb|EFL65317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS455]
gi|302637497|gb|EFL67984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP14-BS292]
gi|302638876|gb|EFL69337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP-BS293]
gi|302641675|gb|EFL72034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS458]
gi|302644154|gb|EFL74411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS457]
gi|302646434|gb|EFL76660.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae BS397]
gi|353759699|gb|EHD40282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47033]
gi|353767099|gb|EHD47638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49138]
gi|353805545|gb|EHD85819.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13455]
gi|353819078|gb|EHD99276.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16121]
gi|353832359|gb|EHE12477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17371]
gi|353846374|gb|EHE26407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41688]
gi|353866302|gb|EHE46204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47976]
gi|353867777|gb|EHE47667.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA52306]
gi|353905842|gb|EHE81258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13338]
gi|379629559|gb|EHZ94153.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP04]
gi|379638739|gb|EIA03284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae England14-9]
gi|379641482|gb|EIA06017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA08825]
gi|395871325|gb|EJG82431.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR95]
gi|395886895|gb|EJG97910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60190]
gi|395892871|gb|EJH03861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA58581]
gi|395908843|gb|EJH19720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60132]
gi|406369090|gb|AFS42780.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae gamPNI0373]
gi|444250644|gb|ELU57122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS125219]
gi|444256642|gb|ELU62980.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS70012]
gi|444261255|gb|ELU67559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0002]
gi|444262370|gb|ELU68668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0006]
gi|444264008|gb|ELU70129.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0008]
gi|444265062|gb|ELU71093.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PCS81218]
gi|444269106|gb|ELU74921.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0010]
gi|444276640|gb|ELU82185.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0009]
gi|444282161|gb|ELU87441.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0360]
gi|444287446|gb|ELU92373.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0427]
Length = 450
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|24375706|ref|NP_719749.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase MurD [Shewanella
oneidensis MR-1]
gi|30316031|sp|Q8E9P6.1|MURD_SHEON RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|24350640|gb|AAN57193.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase MurD [Shewanella
oneidensis MR-1]
Length = 439
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 177/369 (47%), Gaps = 44/369 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGK+TV T VG+ML GI VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKTTVTTLVGEMLREAGIAVAVGGNIGI 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL K + V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLKENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + VS ++G HN+ N +AA++++ +GVD + + + H
Sbjct: 253 HSEIMPITEVS--------LIGSHNHAN-LLAAMALV-YAVGVDKQVMANVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFG--------Y 307
R ++V GVT+V+DSKATN+ AT L L H +++ GG K
Sbjct: 303 RCEVVGVK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFSPLEEPL 361
Query: 308 SGVLIWKTLVNNGLSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
+ V TL +G I V +M AV A ++AT+GD ++LSP CAS D + N
Sbjct: 362 TKVTHLITLGRDGNKIAALKEGAIKVDSMAAAVAKAAQLATSGDIVLLSPACASLDMYSN 421
Query: 363 FEHRGMVFQ 371
F RG F+
Sbjct: 422 FMARGDDFR 430
>gi|417938397|ref|ZP_12581695.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis SK970]
gi|343391487|gb|EGV04062.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis SK970]
Length = 450
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 173/369 (46%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTATGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N + K+D E
Sbjct: 203 YVAAKWNIQSNMTAVDYLVLNF-NQELAKEL-ATKTNATVVPFSTLEKVDGAYLEDGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GV+ E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVENETIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q V + I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQFVDQ-INGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 314 KTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
K +V G S +P ++ DA A +A GD ++LSP AS+D +
Sbjct: 373 KKMVILGQSAERVKRAADKAGVPYVDATDIADATRKASELAEEGDVVLLSPANASWDMYA 432
Query: 362 NFEHRGMVF 370
NFE RG +F
Sbjct: 433 NFEVRGDLF 441
>gi|153809796|ref|ZP_01962464.1| hypothetical protein RUMOBE_00177 [Ruminococcus obeum ATCC 29174]
gi|149833974|gb|EDM89054.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcus
obeum ATCC 29174]
Length = 463
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 167/356 (46%), Gaps = 46/356 (12%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+T +G++++ FV GN+G P + A V
Sbjct: 122 RVLAITGTNGKTTTTALLGKIMSDAEDSVFVVGNIGTPYTSKALEM-------KDSSTTV 174
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + F P VS +LN+T DHL RH TM+ Y K + + +L +
Sbjct: 175 AEISSFQLETIEE-FAPKVSAILNITEDHLNRHHTMEEYIRVKELIVKNQTAEDYCILNY 233
Query: 164 GNQHLNEAIKGHRFNLAWIGAF----PGVKIDTEA---KTASFEVPAVGVVSQLQLHNMK 216
++ L E + + + G+ +D + KTA E+P V +K
Sbjct: 234 EDEVLREFGRHIVPKTVYFSSVRKLDEGIYLDGDLIVLKTADEEIPLV------HTGELK 287
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
++G+HN+ N V A S + GV VE + +I HR++ V GV + +DSK
Sbjct: 288 LLGQHNFEN--VMAASAMAYYAGVSVENIRKSICAFTAVEHRIEYVMEK-NGVAYYNDSK 344
Query: 277 ATNLEATCTGLMDLKGHKCVILLGGQAKFG---------YSGVLIWKTLVNNGLS----- 322
TN +A G+ + ++ +L+GG G + G + + L+
Sbjct: 345 GTNPDAAIKGIQAM--NRPTLLIGGGYDKGSSYDEWLNSFDGKVRYLVLIGQTRDKIKEA 402
Query: 323 ------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
PC N+++AV A GDA++LSP CAS+ +F N+E RG +F+E
Sbjct: 403 AERLGVCPCILCENLEEAVKICAEKANPGDAVLLSPACASWGQFDNYEQRGDMFKE 458
>gi|406891892|gb|EKD37389.1| hypothetical protein ACD_75C01145G0001, partial [uncultured
bacterium]
Length = 413
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 152/296 (51%), Gaps = 28/296 (9%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L +G + EL AA +I ++ ++AVTGTNGK+TV T +G++L G + FVGGN+G
Sbjct: 95 LRSAGLPLAGELGVAAGLI--TVPVVAVTGTNGKTTVTTLIGELLRGSGRKPFVGGNIGT 152
Query: 81 PLSEAAFHCIALPSSKP-KFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
P+ E + C +P ++ V VVEVSS+Q+E F P V V+LN+TPDHL+RH ++
Sbjct: 153 PVYE--YLC------RPAEYDVVVVEVSSFQLESAGT-FAPQVGVLLNITPDHLDRHGSL 203
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+NYA K LF H + ++ ++ + G + G I + T +
Sbjct: 204 ENYARVKMQLFKHQKPGDVAIINGDDRLCRKLPDGAAAEVRSFGC-NAHNIKSTKSTKNT 262
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD-----------IGVDVEALNST 248
+ AV V ++ L + Y A + + +G+ +G E + +
Sbjct: 263 KNAAVLVDDKICLTTHGEV--EEYSLAGTSLGNSVGMQNGAAAILAARALGCTREQIMAG 320
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
++ R PHR++ V ++ GV++ +DSKATN A L G+ +++ GG+ K
Sbjct: 321 LKAFRLAPHRIEFVA-EVDGVSYYNDSKATNTGAVIAALRQFPGN-VILIAGGRDK 374
>gi|417915776|ref|ZP_12559375.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis bv. 2 str. SK95]
gi|342832068|gb|EGU66369.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis bv. 2 str. SK95]
Length = 450
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELASK--TQATVVPFSTLEKVDGAYLADGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAASEIGVPGGHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V +I+GV + +DSK+TN+ AT L K +++ GG + L+ K +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAAEKAGVAYVDATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|89074172|ref|ZP_01160671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium sp. SKA34]
gi|89050108|gb|EAR55634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium sp. SKA34]
Length = 446
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 191/406 (47%), Gaps = 69/406 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + G+A ++G ++ +++ A+ + + ++A+TG+NGKSTV
Sbjct: 65 WLLSADLIVASPGIALATPELVVAAEAGIEIVGDIELFAREVDK--PVVAITGSNGKSTV 122
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
+ VG+M G+ VGGN+G AA +A + + V+E+SS+Q+E
Sbjct: 123 TSLVGEMAKEAGVNVGVGGNIGF----AALDMLA-----QQHALYVLELSSFQLETTTSL 173
Query: 118 FCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR 176
T +V LNL+ DH++R+ + Y+ K +F H KL + F L A K +
Sbjct: 174 EL-TAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDH---AKLAV--FNRDDL--ATKPTQ 225
Query: 177 FNLAWIGAFPGVKIDTEAKTASF----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232
F+ GA D + E AV + + + ++ ++GRHN N A
Sbjct: 226 FS----GAMTSFGFDDQDYGIVLVDGKEWLAVNGEAVMAVTDIALVGRHNVANCLAALAL 281
Query: 233 VLGLDIGVDVEALNSTIEILRTPPHRMQI-VHRDIQGVTWVDDSKATNLEATCTGL--MD 289
G+ +A ++ HR Q+ V+R GV WV+DSKATNL +T L +
Sbjct: 282 ADA--AGIPRDAAYRAMQRYTGLAHRCQLAVNR--HGVRWVNDSKATNLASTLAALNGLQ 337
Query: 290 LKGHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVA 329
L+G K +L+GG +K FG L + +V+N +S V
Sbjct: 338 LEG-KLHLLMGGDSKGAEFSELKPILADLNVQLYSFGRDRHL-FNDVVDNAIS-----VE 390
Query: 330 NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 375
MKDA+ R +GD ++LSP CAS+D+F NF RG F E A
Sbjct: 391 TMKDAMVCISRTVQSGDMVLLSPACASWDQFANFMARGDAFVEQAI 436
>gi|332305223|ref|YP_004433074.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola sp.
4H-3-7+YE-5]
gi|332172552|gb|AEE21806.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola sp.
4H-3-7+YE-5]
Length = 441
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 174/386 (45%), Gaps = 54/386 (13%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ + +++G +V+ +++ A + +LAVTG+NGKSTV T +M G
Sbjct: 73 LSLQTAAIQEAIEAGVQVVGDIELFAMF--NNTPVLAVTGSNGKSTVATLAYEMCIAGGK 130
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+A +GGN+G P AL + + V+E+SS+Q+E P V+ +LNL+
Sbjct: 131 KALLGGNIGTP---------ALELLEKDADIIVLELSSFQLE-STHTLRPLVACMLNLSD 180
Query: 131 DHLERHKTMKNYALTKCHL-----FSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIGA 184
DHL+RH M +Y K + FS P N + + L+W
Sbjct: 181 DHLDRHGDMLSYQRAKLRIYKDARFSVCNRDDAATWPMTINPDVMFGLSSSERGLSWDKD 240
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
+ +D +A L ++G HN N + A + + + G+++EA
Sbjct: 241 TAQLLLDGKA--------------YLDSQACMLVGEHNMLN--IQAATAMTMLAGIELEA 284
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLG 300
+ S HR Q V V W++DSKATN+ AT + L KG K +++ G
Sbjct: 285 IKSAAMNFAGLAHRCQTVAMS-SNVRWINDSKATNVGATIAAIDGLAPTCKG-KLILIAG 342
Query: 301 GQAKFGYSGVLIWK------TLVNNGLSIPCFA--------VANMKDAVNHARRMATNGD 346
G K L + L+ G P A V N++DAV A +A+
Sbjct: 343 GDGKGADFSPLEERFNHQVSELITLGKDGPELAKLKPSSHQVVNLEDAVQLAASLASKDS 402
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQE 372
++LSP CAS D F+N++ RG +F++
Sbjct: 403 TVLLSPACASLDMFKNYQQRGELFEQ 428
>gi|149020325|ref|ZP_01835217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP23-BS72]
gi|418102404|ref|ZP_12739480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP070]
gi|419475080|ref|ZP_14014921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14688]
gi|419486191|ref|ZP_14025958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44128]
gi|421208522|ref|ZP_15665547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070005]
gi|421224541|ref|ZP_15681287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070768]
gi|421233699|ref|ZP_15690321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2061617]
gi|421240257|ref|ZP_15696806.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2080913]
gi|421249004|ref|ZP_15705467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2082239]
gi|147930627|gb|EDK81609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP23-BS72]
gi|353776570|gb|EHD57045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP070]
gi|379561418|gb|EHZ26435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14688]
gi|379589100|gb|EHZ53940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44128]
gi|395576992|gb|EJG37546.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070005]
gi|395591877|gb|EJG52172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070768]
gi|395602596|gb|EJG62738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2061617]
gi|395609815|gb|EJG69900.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2080913]
gi|395615633|gb|EJG75649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2082239]
Length = 450
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|419522826|ref|ZP_14062408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13723]
gi|379559304|gb|EHZ24333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13723]
Length = 434
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 77 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 134
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 135 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 186
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 187 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 243
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 244 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 300
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 301 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 359
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 360 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 419
Query: 365 HRGMVF 370
RG +F
Sbjct: 420 VRGDLF 425
>gi|418134424|ref|ZP_12771282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11426]
gi|353903014|gb|EHE78540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11426]
Length = 450
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K + V+E+SS+Q+ + + F P ++V+ NL P H++ H
Sbjct: 151 ASQVA----QIASDK---DMLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|376316532|emb|CCF99921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme) [uncultured
Flavobacteriia bacterium]
Length = 446
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 177/374 (47%), Gaps = 43/374 (11%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V+SE++ A + K + +TG+NGK++ + +L ++ V GN+G +
Sbjct: 84 AGIEVISEVELAYRNCKS--KFIGITGSNGKTSTTGLLFHLLEKAKLDVAVAGNIGKSI- 140
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNY 142
C L +P++ VVE+SS+Q++ F P ++++LN++PDHL+R+ ++NY
Sbjct: 141 -----CWLLTEREPEY--LVVELSSFQLDDVVD-FKPIIAILLNISPDHLDRYDYKLENY 192
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
A K + + + ++ LN + R + D+ A E
Sbjct: 193 AEAKFRITKNQSPEDFFIYWNEDELLNAFVDSGRVKARTLSYGSKETADSAAWIEIEEES 252
Query: 203 AVGVVS-----QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
+++ ++ + + + GRHN +N+ A ++ LD+ +V + ++ + H
Sbjct: 253 ETELLNLNNKLRMSIQKLALQGRHNIYNSMAAGVAGRILDLRKEV--IRDSLMDFQNIEH 310
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLV 317
R++ V + GV +++DSKATN+ +C ++ V + GG K L+ LV
Sbjct: 311 RLEHV-VSVCGVKYINDSKATNVN-SCWWALESMDRPSVWIAGGVDKGNDYSSLV--ELV 366
Query: 318 NNG--------------------LSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
+ L IP V +M+ AV A MA GDA++LSP CASF
Sbjct: 367 DEKVKGIVLIGSENEKFKASFAELKIPIIEVMSMELAVREAYNMADKGDAVLLSPACASF 426
Query: 358 DEFRNFEHRGMVFQ 371
D F N+E RG F+
Sbjct: 427 DLFDNYEDRGHQFK 440
>gi|254430906|ref|ZP_05044609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
7001]
gi|197625359|gb|EDY37918.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
7001]
Length = 473
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 174/391 (44%), Gaps = 47/391 (12%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G RV E+ A R + + +TGTNGK+TV V +L G++A + GN
Sbjct: 95 LTALRSRGVRVQGEM-VPAWEASRPVPWIGITGTNGKTTVTHLVHHLLEASGLDAPMAGN 153
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +E + P + V VE+SSYQ+E + P V + LTPDHLERH
Sbjct: 154 VGYSAAELVLDRRGSGAELPTWMV--VELSSYQIEAAPE-VAPRVGIWTTLTPDHLERHG 210
Query: 138 TMKNY-ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
T++ Y A+ + L V G P +H W+ A P ++ EA
Sbjct: 211 TLEAYRAIKRSLLERSQVQVLNGDDPDLQRH-----AASWPGACWVTAGPRQEL-PEAIR 264
Query: 197 ASFEVPAVGVVSQLQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNST 248
V A V+ + +M G HN N +A + GL+ G+ + +
Sbjct: 265 PHLWVEAGRVIRDHNGTSQDLMAADCLAMPGEHNRQNMMLAIAA--GLEAGLTGQQMECA 322
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS 308
PHR++ + + GV++ +DSKATN +A + L G V+L GGQAK G +
Sbjct: 323 FRSFPGVPHRLERIDQQA-GVSYYNDSKATNYDAAEVAVRALAG-PLVVLAGGQAKRGEA 380
Query: 309 GVLIWKTLVNNGLSIPCFAVAN---------------------MKDAVNHARRMAT--NG 345
+ + L ++ F A + +AV AR +A +
Sbjct: 381 RGWL-EALHQKARAVVLFGAAQAEFQALLEGASFAGAIHRCDGLNEAVPLARALAAELHC 439
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
A++LSP CASFD++ +FE RG F+ L +
Sbjct: 440 RAVLLSPACASFDQYTDFEARGEHFRSLVLA 470
>gi|421093367|ref|ZP_15554091.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. 200801926]
gi|410363350|gb|EKP14379.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. 200801926]
gi|456888659|gb|EMF99617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
borgpetersenii str. 200701203]
Length = 462
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 166/385 (43%), Gaps = 91/385 (23%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+ +TGT+GKST + V +L + GGNLG P + I+L AV
Sbjct: 103 KIIGITGTDGKSTTTSLVAHLLKKDFSDLKEGGNLGIPFTSFCKEPISL---------AV 153
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHL-------FSHMVNT 156
+E+SSYQ+E + VSV LNL PDHLERH+TM+NY K + S +V+
Sbjct: 154 LELSSYQLEDSSPLDL-NVSVFLNLAPDHLERHETMENYFRAKLKIADLQNPNHSLIVSE 212
Query: 157 KL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K+ LL FG +EAI +E +T+ F +
Sbjct: 213 KIREKILNSTSVRCKLLSFGRATTSEAILDES--------------SSEIRTSKF----I 254
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+S+ L G HN N A A L+ IG E++ + I PHR QI
Sbjct: 255 YDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQAQIPFFMGLPHRFQIAGE 307
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKFGYSGVL------------ 311
+G+++++DSK+TNL + G+ K + ++LGG+ K L
Sbjct: 308 K-RGISFINDSKSTNLHSMLAGMSTWKNLDRTCLILGGRPKQEDPKPLYDFLMRRIGCVV 366
Query: 312 -------IWKTLVNNGLSIPCFAVANMKDAVN------------HARRMATNGDA----I 348
+W + N + F+V N+ +A R++ + +
Sbjct: 367 LIGEARSVWGKGIRNVIGEKLFSVENLDEAFKIFKKWNVISESPEIRKIRLSSEITISYF 426
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
V SP C SFD+++NFE RG F L
Sbjct: 427 VFSPACVSFDQYKNFEERGNHFLSL 451
>gi|410642379|ref|ZP_11352891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
chathamensis S18K6]
gi|410138051|dbj|GAC11078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
chathamensis S18K6]
Length = 441
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 174/386 (45%), Gaps = 54/386 (13%)
Query: 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI 70
L+ + +++G +V+ +++ A + +LAVTG+NGKSTV T +M G
Sbjct: 73 LSLQTAAIQEAIEAGVQVVGDIELFAMF--NNTPVLAVTGSNGKSTVATLAYEMCIAGGK 130
Query: 71 EAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTP 130
+A +GGN+G P AL + + V+E+SS+Q+E P V+ +LNL+
Sbjct: 131 KALLGGNIGTP---------ALELLEKDADIIVLELSSFQLE-STHTLRPLVACMLNLSD 180
Query: 131 DHLERHKTMKNYALTKCHL-----FSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIGA 184
DHL+RH M +Y K + FS P N + + L+W
Sbjct: 181 DHLDRHGDMLSYQRAKLRIYKDARFSVCNRDDAATWPMTINPDVMFGLSSSERGLSWDKD 240
Query: 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
+ +D +A L ++G HN N + A + + + G+++EA
Sbjct: 241 TAQLLLDGKA--------------YLDSQACMLVGEHNMLN--IQAATAMTMLAGIELEA 284
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLG 300
+ S HR Q V V W++DSKATN+ AT + L KG K +++ G
Sbjct: 285 IKSAAMNFAGLAHRCQTVAMS-SNVRWINDSKATNVGATIAAIDGLAPTCKG-KLILIAG 342
Query: 301 GQAKFGYSGVLIWK------TLVNNGLSIPCFA--------VANMKDAVNHARRMATNGD 346
G K L + L+ G P A V N++DAV A +A+
Sbjct: 343 GDGKGADFSPLEERFNHQVSELITLGKDGPELAKLKPSSHQVVNLEDAVQLAASLASKDS 402
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQE 372
++LSP CAS D F+N++ RG +F++
Sbjct: 403 TVLLSPACASLDMFKNYQQRGELFEQ 428
>gi|421487907|ref|ZP_15935305.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK304]
gi|400369869|gb|EJP22866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK304]
Length = 450
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 176/370 (47%), Gaps = 42/370 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ ++M +L F NQ L + + A + F + KID E
Sbjct: 203 YVAAKWNIQNNMTAADFLVLNF-NQDLAKELATK--TQATVVPFSTLEKIDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI----- 312
R+Q V +I+GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 313 RLQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITG 371
Query: 313 WKTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
K +V G S + ++ DA A +AT GD ++LSP AS+D +
Sbjct: 372 LKKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLLSPANASWDMY 431
Query: 361 RNFEHRGMVF 370
NFE RG +F
Sbjct: 432 ANFEVRGDLF 441
>gi|359398445|ref|ZP_09191464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
pentaromativorans US6-1]
gi|357600136|gb|EHJ61836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
pentaromativorans US6-1]
Length = 444
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 171/376 (45%), Gaps = 56/376 (14%)
Query: 23 QSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
++G V+ +++ A P + +++ +TGTNGKST + V +L G+ A +GGN+G
Sbjct: 87 RAGVPVIGDIELFALARPSLPAHRVVGITGTNGKSTTTSLVHHLLEKAGVPARMGGNIGV 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P I P+ V V+E+SSYQ+++ C V+ +LN+TPDHL+R+
Sbjct: 147 P--------ILGTDPLPEGGVYVLELSSYQIDLTRSLDC-DVAALLNITPDHLDRYDGFA 197
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLN--EAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
YA +K LF+ + G+ + +G R L + G K+ T
Sbjct: 198 AYAASKARLFTMQGAEHDAVFGSGDAETAAIASTEGDRRGLDHVRIVDGAKLTT------ 251
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
LQ + G HN NAAVA V L G+ E + R PHR
Sbjct: 252 -----------LQKKWPSLQGPHNLQNAAVAVAIVEAL--GIKPEQWKRAMRNFRGLPHR 298
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAKFG-------YS 308
M+ V + GV +++DSKATN + L + ++GG K Y
Sbjct: 299 MERVA-EADGVFYINDSKATNPASAAPALAAFPPDPEPRIHWIVGGLPKGDDLDECAPYF 357
Query: 309 GVLIWKTLVNNGLSIPCFA-----------VANMKDAVNHARRMATNGDAIVLSPGCASF 357
G L + G + P FA M +A+ A A GD ++LSP CASF
Sbjct: 358 GNLAAAYTI--GDAGPRFAEILAPYTQVHRSEMMAEAIREAMAAARPGDVVMLSPACASF 415
Query: 358 DEFRNFEHRGMVFQEL 373
D+FR++E RG VF+++
Sbjct: 416 DQFRDYEARGEVFRQI 431
>gi|313115620|ref|ZP_07801078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
cf. prausnitzii KLE1255]
gi|310622069|gb|EFQ05566.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
cf. prausnitzii KLE1255]
Length = 467
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 174/385 (45%), Gaps = 55/385 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V SE++ P +I+AVTG++GK+T T + + G + +GGN+G
Sbjct: 100 MAAGTMVTSEVELFFDFCP--CEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAA 157
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L LP P+ VAVVE+SS+Q+ + + P ++VV N+TP+HL+ HK M+
Sbjct: 158 L------LPMLPEVAPE-DVAVVELSSFQL--ISMHSSPNIAVVTNVTPNHLDHHKDMQE 208
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWIGAFPGVKIDTE 193
Y K ++ + +L + N+ + KG R + GAF
Sbjct: 209 YIDAKRNILLYQKQPCRAVLGYENEISRSMQSDCKGKQVWFTRLHDTDNGAF------LR 262
Query: 194 AKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ + GVV+ L ++K+ G HN N AA +V G V VEA+
Sbjct: 263 KEDNMLCMAEDGVVTPFLAQKDVKLRGLHNIENLLAAAAAVWG---EVPVEAIQKVGSTF 319
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
HR++ V R + GV + +DS T+ T GL K +++ GG K
Sbjct: 320 TGVEHRIEPV-RTLDGVLYYNDSIGTSPTRTIAGLRSFN-QKVILIAGGYDKHIPYEPLA 377
Query: 305 ------------FGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAI 348
G +G I K + N +P NM+ AV AR A GD I
Sbjct: 378 PEVVAHVKNLVLMGATGPRIEKAVREDPNFNEAELPIQHADNMQHAVELARACAKPGDII 437
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+LSP ASFD + NFE RG F+++
Sbjct: 438 ILSPASASFDLYPNFEVRGREFKKI 462
>gi|405760874|ref|YP_006701470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPNA45]
gi|404277763|emb|CCM08311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPNA45]
Length = 450
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|401684020|ref|ZP_10815903.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. BS35b]
gi|418974839|ref|ZP_13522748.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK1074]
gi|383348210|gb|EID26169.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK1074]
gi|400186325|gb|EJO20537.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. BS35b]
Length = 450
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 174/368 (47%), Gaps = 38/368 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASKVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F + A A ++
Sbjct: 203 YVAAKWNIQNKMTAVDFLVLNF-NQDLAKELATK--TQATVVPFSTKEKVDGAYLADGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAASEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V +I+GV + +DSK+TN+ AT L K +++ GG +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGLKKM 375
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
G S + + N G++ ++ DA A +AT GD ++LSP AS+D + N
Sbjct: 376 VILGQSAERVKRAADNAGVA--YVDATDIADATRKAYELATQGDVVLLSPANASWDMYAN 433
Query: 363 FEHRGMVF 370
FE RG +F
Sbjct: 434 FEVRGDLF 441
>gi|406942300|gb|EKD74566.1| hypothetical protein ACD_44C00400G0008 [uncultured bacterium]
Length = 441
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 171/356 (48%), Gaps = 58/356 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N K TV T VG ML+ + VGGN+G P + L + P+F V+
Sbjct: 104 IIAITGSNAKGTVTTLVGNMLSAANRKGLVGGNIGVPALD------LLTNPPPEFY--VL 155
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + + VLN++PDHL+RH T++NY +K ++ N K +
Sbjct: 156 ELSSFQLET-TQSLKAHAATVLNISPDHLDRHLTLENYISSKQRIYK---NCKTAIY--- 208
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH----------N 214
+ ++A I + K T ++ F+ + +++ L
Sbjct: 209 ----------NGDDMATIPHYSVSKKITFGASSEFDFHLLSEKNEIYLAEHHEKLLPVIE 258
Query: 215 MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274
+K+ G+HN+ NA A +D+ +A + ++ PHR Q + ++ GV W DD
Sbjct: 259 LKISGKHNWLNALAALALASTMDL--PRQAKLTALQTFSGLPHRCQWLG-NLNGVHWYDD 315
Query: 275 SKATNLEATCT---GLMDLKGHKCVILLGGQAKFGYSGVLIW------KTLVNNGLSIPC 325
SK TN+ +T GL K +++ GG K +L KTL+ G P
Sbjct: 316 SKGTNIGSTLAAIQGLGTTTSGKIILIAGGVGKGADFELLKEPVLSHVKTLLLLGQDAPL 375
Query: 326 FA-----------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
A V ++++A A +++ +GD ++LSP CAS D F+++ HRG VF
Sbjct: 376 IADALKGCCEIIHVRDLEEASRVAFKISKSGDIVLLSPACASLDMFKDYHHRGEVF 431
>gi|398961888|ref|ZP_10678977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM30]
gi|398151825|gb|EJM40362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas sp.
GM30]
Length = 448
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 165/356 (46%), Gaps = 56/356 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 IVAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------ALELLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFVVNRQDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNL--AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ E F L AF G++ + K +FE + + + +KV
Sbjct: 221 ---SRPLIGEGQPCWTFGLNKPDFKAF-GLREEDGEKYLAFEFQNL-----MPVRELKVR 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN A A LG +G+ +A+ + HR Q + RD+ GV + +DSKAT
Sbjct: 272 GAHN--QANALAALALGHAVGLPFDAMLDALRNFTGLEHRCQWL-RDLDGVGYYNDSKAT 328
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYSGVLIWK 314
N+ A + D+ G K V++ GG K G I +
Sbjct: 329 NVGAALAAIEGLGADIDG-KVVLIAGGDGKGAEFNDLRDPVAANCRAVILMGRDSDKIGE 387
Query: 315 TLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ G ++P ++ DAV R +A GD ++LSP CASFD F+N+E RG F
Sbjct: 388 AI---GDAVPLIRATSLVDAVAQCRAVAQPGDVVLLSPACASFDMFKNYEDRGHQF 440
>gi|295109206|emb|CBL23159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus obeum
A2-162]
Length = 451
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 170/357 (47%), Gaps = 48/357 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++LA+TGTNGK+T +G+++ FV GN+G P + A V
Sbjct: 110 RVLAITGTNGKTTTTALLGKIMGDAEESVFVVGNIGTPYTSKALEM-------QDNTTTV 162
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + F P VS +LN+T DHL RH TM+ Y K + + +L +
Sbjct: 163 AEISSFQLETIEE-FAPKVSAILNITEDHLNRHHTMEEYIRVKELIVKNQTADDFCILNY 221
Query: 164 GNQHLNEAIKGHRFNLAWIGAF----PGVKIDTEA---KTASFEVPAVGVVSQLQLHNMK 216
+ L E + + + + G+ +D + KT+ E+P V + +K
Sbjct: 222 EDPVLREFGRNITPKVVYFSSVRRLEEGIYLDGDQIILKTSEEEIPLV------RTGELK 275
Query: 217 VMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
++G+HN+ N V A S + GV VE++ +I HR++ V GV + +DSK
Sbjct: 276 LLGQHNFEN--VMAASAMAYYAGVPVESIRKSICEFTAVEHRIEYVTEK-NGVVYYNDSK 332
Query: 277 ATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW--------KTLVNNGLS------ 322
TN +A G+ + ++ +L+GG G SG W + LV G +
Sbjct: 333 GTNPDAAIKGIQAM--NRPTLLIGGGYDKG-SGYDEWLNAFDGKVRYLVLIGQTRDKIKA 389
Query: 323 -------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
PC N+++AV A GDA++LSP CAS+ +F N+E RG +F+E
Sbjct: 390 AAERLGVCPCILCENLEEAVKVCAEKANPGDAVLLSPACASWGQFDNYEQRGDMFKE 446
>gi|313893665|ref|ZP_07827233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
oral taxon 158 str. F0412]
gi|313441809|gb|EFR60233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
oral taxon 158 str. F0412]
Length = 456
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 179/374 (47%), Gaps = 48/374 (12%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V+SE++ A +V I+AVTGTNGK+T T + ++L G VGGN+G+ LSE
Sbjct: 92 GIDVVSEVELAYEV--SKSPIVAVTGTNGKTTTTTLLTKVLEGSGKPVRVGGNIGDSLSE 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S P V E+SSYQ+E K+F P +++LN+TPDHL RHKTM+NY
Sbjct: 150 VAY-------SMPAGGFLVAELSSYQLETI-KHFRPIGAIMLNITPDHLARHKTMENYIA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV--- 201
K +F + + + +L + + A HR + ++ A A+ +
Sbjct: 202 AKERIFENQLKSDYLVLNIDDPIV--ADMEHRAPSHILQISQKQTVENGAYYANGQCYVV 259
Query: 202 ---PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
A V+ +H + G HN N + + L +GV V ++ I HR
Sbjct: 260 KNGVATAVIGDKDIH---IPGSHNIEN--ILTVIALTYALGVPVVEIHRIISEFHGVEHR 314
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAK------------- 304
++ V + I G+T+ +DSKATN+++ L K VILL GG K
Sbjct: 315 LERV-KTIDGITFYNDSKATNVDSVVKALESFD--KPVILLAGGHDKMTPLEEFMQLVKV 371
Query: 305 -------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
G + G+ P + +MKDAV ++A +GD ++LSP CASF
Sbjct: 372 KTKAVIFMGEAAERFEAAAKEAGVE-PIYRALSMKDAVEQGYKLAESGDIVLLSPACASF 430
Query: 358 DEFRNFEHRGMVFQ 371
D + FE RG F+
Sbjct: 431 DWYSCFEERGDDFK 444
>gi|295101921|emb|CBK99466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
prausnitzii L2-6]
Length = 466
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 173/385 (44%), Gaps = 56/385 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V SE++ Q P +I+AVTG++GK+T T + + G +GGN+G
Sbjct: 100 MAAGTMVTSEVELFFQFCP--CEIVAVTGSDGKTTTTTLISKFYEAAGRRVHLGGNIGAA 157
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L LP P VAVVE+SS+Q+ + + P ++VV N+TP+HL+ HK M+
Sbjct: 158 L------LPMLPEVSPD-DVAVVELSSFQL--ISMHQSPNIAVVTNVTPNHLDHHKDMQE 208
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAFPGVKIDTE 193
Y K ++ + +L + N+ K + W GAF ++ D
Sbjct: 209 YIDAKRNILLYQKQPCRAVLGYENEISRSMQKDCKGKQVWFTRLHETDNGAF--LREDGM 266
Query: 194 AKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
A GVV+ L ++K+ G HN N AA +V G V VEA+
Sbjct: 267 LCMAEN-----GVVTPFLAQKDVKLRGLHNIENLLAAAAAVWG---EVPVEAIQLVGSSF 318
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
HR++ V R + GVT+ +DS T+ T GL K +++ GG K
Sbjct: 319 TGVEHRIEPV-RVLDGVTYYNDSIGTSPTRTIAGLRSFD-QKVILIAGGYDKHIPYEPLA 376
Query: 305 ------------FGYSGVLIWKTLVNN----GLSIPCFAVANMKDAVNHARRMATNGDAI 348
G +G I K + + +P NM+ AV AR A GD I
Sbjct: 377 PEITAHVKNLVLMGATGPRIEKAVREDPNFHEAELPIQHADNMQHAVELARACAKPGDII 436
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+LSP ASFD + NFE RG F+ +
Sbjct: 437 ILSPASASFDLYPNFEVRGREFKSI 461
>gi|225028113|ref|ZP_03717305.1| hypothetical protein EUBHAL_02383 [Eubacterium hallii DSM 3353]
gi|224954583|gb|EEG35792.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacterium
hallii DSM 3353]
Length = 453
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 178/374 (47%), Gaps = 46/374 (12%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
K V E++ AA KI A+TGTNGK+T VG +L FV GN+G P
Sbjct: 94 KPVWGEIELAAHFAKG--KIAAITGTNGKTTTTALVGSILREYYKSVFVVGNIGIP---- 147
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALT 145
F +AL +++ V E+SS+Q+E F P VS VLN+TPDHL+RH TM+ YA T
Sbjct: 148 -FTSVALDTTED--SVIAAEISSFQLETTID-FQPEVSAVLNVTPDHLDRHGTMEVYADT 203
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K + ++ +L + + E K + + +F + G
Sbjct: 204 KFSISKKQNKEQVIVLNYDDPITREMAKKATARPVMFSRLEELDEGIVLRGDTFIIKEDG 263
Query: 206 VVSQLQL---HNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQ 260
+L + +K++G HN+ N L+ +G+ +GV VE + + HR++
Sbjct: 264 --KELPVCTTSEIKLLGSHNHENI----LAAIGITYYMGVPVEQIRDAVMKFTAVEHRIE 317
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG-----------------QA 303
V + GV + +DSK TN +A G+ + K ILLGG +
Sbjct: 318 YVDT-VDGVDYYNDSKGTNPDAAIKGISAMT--KPTILLGGGYDKKSTYDEWIDAFHGKV 374
Query: 304 KF----GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
++ G + I T N+G FA ++A+N A+ A GDA++LSP CAS+
Sbjct: 375 RYLIVMGATAQAIADTAKNHGFHNVIFA-DTFEEAMNIAKEKARPGDAVLLSPACASWGM 433
Query: 360 FRNFEHRGMVFQEL 373
F+N+E RG VF+E+
Sbjct: 434 FKNYEVRGKVFKEI 447
>gi|149010691|ref|ZP_01832062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP19-BS75]
gi|418188918|ref|ZP_12825433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47373]
gi|419468563|ref|ZP_14008434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA06083]
gi|147765172|gb|EDK72101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP19-BS75]
gi|353856060|gb|EHE36029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47373]
gi|379546666|gb|EHZ11804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA06083]
Length = 450
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 174/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|424047931|ref|ZP_17785487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HENC-03]
gi|408883241|gb|EKM22028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
HENC-03]
Length = 437
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 174/384 (45%), Gaps = 52/384 (13%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L + ++ G V+ +++ A + + + +A+TG+NGKSTV G + G+
Sbjct: 80 LATPDIQTVIVKGTPVVGDIELFAWAVDKPV--IAITGSNGKSTVTDLTGVLAKAAGLTV 137
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
VGGN+G P AL + + V+E+SS+Q+E + LNL+ DH
Sbjct: 138 GVGGNIGVP---------ALDLLEQDADLYVLELSSFQLET-TASLKLKAAAFLNLSEDH 187
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---GVK 189
++R+ M +Y K +F N +L ++ N+ E L G+ G++
Sbjct: 188 MDRYDGMADYRQAKLRIFD---NAELAVV---NRDDRETFPETETPLVTFGSDEQAYGLE 241
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+D +T + + S +K++G+HN N AL VL L DV+ L S +
Sbjct: 242 VDGN-RTWLLDHGQRVIASD----ELKLVGKHNLAN----ALVVLALLKAADVDYLKS-L 291
Query: 250 EILRTP---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKF 305
L+T HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K
Sbjct: 292 NALKTYTGLTHRCQVVA-DNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK- 349
Query: 306 GYSGVLIWKTLVNNGLSIPCFAV---------------ANMKDAVNHARRMATNGDAIVL 350
G + L + CF M+D + GD ++L
Sbjct: 350 GADFTPLKPIFATLNLQLCCFGADGDEFMPLHESATRFDTMEDVIQQISSQLKTGDMVML 409
Query: 351 SPGCASFDEFRNFEHRGMVFQELA 374
SP CASFD+F NF RG F LA
Sbjct: 410 SPACASFDQFDNFMARGDAFAALA 433
>gi|261222575|ref|ZP_05936856.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
B1/94]
gi|265998540|ref|ZP_06111097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
M490/95/1]
gi|260921159|gb|EEX87812.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
B1/94]
gi|262553164|gb|EEZ08998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
M490/95/1]
Length = 467
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 161/349 (46%), Gaps = 35/349 (10%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+A+TGTNGKST + ++ G + +GGN+G + P +F V VE
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTAI------LTLEPPCADRFYV--VE 168
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
SSYQ+++ PT ++LNLTPDHL+RH +M+NYA K L + +G+
Sbjct: 169 CSSYQIDL-APSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGIDDAYC 227
Query: 166 QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNM-KVMGRHNY 223
Q + + + G + I + A A G + ++ L + + G HN
Sbjct: 228 QAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNA 287
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
NA A ++ L G+ +E +++ ++ HRM+ V R + V +V+DSKATN EAT
Sbjct: 288 QNALAAIVAC--LSAGLSLEEIHAGLKSFPGLAHRMEQVGRRGK-VLFVNDSKATNAEAT 344
Query: 284 CTGLMDLKGHKCVILLGGQAKFG------------YSGVLIWKTLVNN----GLSIPCFA 327
L ++GG K G LI + G ++P
Sbjct: 345 APALSSFP-QNIYWIVGGVPKAGGINSLTAFFPRVAKAYLIGEAAAQFAATLGSAVPFEI 403
Query: 328 VANMKDAVNHARRMATNGDA----IVLSPGCASFDEFRNFEHRGMVFQE 372
+ AV HA A N A ++LSP CASFD+F+NFE RG F++
Sbjct: 404 SDTLAAAVAHATGDAGNDAAPEPVVLLSPACASFDQFQNFEKRGDAFRD 452
>gi|149005804|ref|ZP_01829543.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP18-BS74]
gi|307126882|ref|YP_003878913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 670-6B]
gi|417676448|ref|ZP_12325861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17545]
gi|418095790|ref|ZP_12732906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16531]
gi|418112041|ref|ZP_12749044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41538]
gi|418132342|ref|ZP_12769217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11304]
gi|418154728|ref|ZP_12791459.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16242]
gi|418225121|ref|ZP_12851750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP112]
gi|419466824|ref|ZP_14006706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05248]
gi|419512095|ref|ZP_14051729.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05578]
gi|419516379|ref|ZP_14055997.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02506]
gi|419525433|ref|ZP_14064998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14373]
gi|421282886|ref|ZP_15733675.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04216]
gi|421298150|ref|ZP_15748840.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60080]
gi|147762744|gb|EDK69704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP18-BS74]
gi|306483944|gb|ADM90813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 670-6B]
gi|332077113|gb|EGI87575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17545]
gi|353772570|gb|EHD53076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16531]
gi|353785690|gb|EHD66108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41538]
gi|353808008|gb|EHD88277.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11304]
gi|353823020|gb|EHE03195.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16242]
gi|353882429|gb|EHE62240.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP112]
gi|379543537|gb|EHZ08686.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05248]
gi|379559824|gb|EHZ24851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14373]
gi|379636565|gb|EIA01123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05578]
gi|379640382|gb|EIA04921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02506]
gi|395882752|gb|EJG93796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04216]
gi|395903653|gb|EJH14581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA60080]
Length = 450
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 174/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDIPGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYEIATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|348590588|ref|YP_004875050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
asinigenitalis MCE3]
gi|347974492|gb|AEP37027.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
asinigenitalis MCE3]
Length = 481
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 186/391 (47%), Gaps = 69/391 (17%)
Query: 27 RVMSELDFAAQVI-------PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
+++SE+D I IKI+ +TGTNGK+TV + V M + G++A GN
Sbjct: 102 KIISEIDLFMHAILEHNKANSTPIKIIGITGTNGKTTVTSMVRLMCEYSGLKAVAAGN-- 159
Query: 80 NPLSEAAFHCIALPSSKPKFQVAV-VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT 138
+S +A I+ + K+ A+ +E+SS Q+ ++ S +LN+T DH++ H +
Sbjct: 160 --ISPSALTVISEFEQQNKWPDAIALELSSAQLFYTSELKL-DASTILNITQDHIDWHGS 216
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHL--NEAIKGHRFNLAWI--GAFPGVKIDTEA 194
M+ Y +K +F F Q + +E K + N AWI A P E
Sbjct: 217 MQAYTESKLKIFD-----------FSEQIIASDEQAKEYGLNKAWIYTEALP----QKEN 261
Query: 195 KTASFEVPAVGVVSQLQ-----LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+ EV + Q + MK+ G HN N A+AA+ L +G+ +E L + +
Sbjct: 262 EIGVNEVNGMKWFCTTQKNLMPVDAMKIRGHHNVLN-AMAAIQ-LCQSVGLPLEPLLAAL 319
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----- 304
PHR V RDI GV ++DDSK TN+ AT + D V++LGG+ K
Sbjct: 320 RDYEAQPHRCTYV-RDINGVIFIDDSKGTNVGATVAAI-DGMYRNLVVILGGEGKGQDFT 377
Query: 305 -----------FGYSGVLIW---KTL------VNNGL---SIPCFAVANMKDAVNHARRM 341
G G+++ K L V +GL S+P V +++ AV+ A +
Sbjct: 378 PLNESLQKRVPDGLRGLVLLGKHKDLLKSSFHVKDGLFANSVPVKEVQSIEQAVHEAFAL 437
Query: 342 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
A GD ++LSP CAS D F+N+ RG+ F +
Sbjct: 438 AQAGDLVLLSPACASTDMFKNYHERGVKFAD 468
>gi|134095973|ref|YP_001101048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Herminiimonas
arsenicoxydans]
gi|133739876|emb|CAL62927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme) [Herminiimonas
arsenicoxydans]
Length = 498
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 169/379 (44%), Gaps = 68/379 (17%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS----EAAFHCIALPSSKPKF 99
K++A+TGTNGK+TV + VG + G+ V GN+ +P + + A ALP
Sbjct: 120 KVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNI-SPAALDRLDQAVASDALP------ 172
Query: 100 QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS-------- 151
QV V+E+SS+Q+ V+ VLNLT DHL+ H M YA K +F
Sbjct: 173 QVWVLELSSFQLHF-TYSLQADVATVLNLTQDHLDWHGDMAAYADDKARIFGSNTIRVLN 231
Query: 152 -------HMVNTKLGLLPFGNQHLNEAIKGHRFNLA------WIG-AFPGVKIDTEAKTA 197
M ++ FG +EA + + F LA W+ A ++ + +
Sbjct: 232 RDDARVMQMALPSAAVITFGA---DEAGQANCFGLADENGMRWLSVAVAEEELPQKRRKK 288
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL--DIGVDVEALNSTIEILRTP 255
A+ + + +K+ G+HN A+ ALS L L IG+ L +
Sbjct: 289 DNVELAISTKKLMPVDALKIRGQHN----AINALSALALCRAIGLSFAQLLHGLREYHGE 344
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-----GHKCVILLGGQ-------- 302
PHR++ V I GV + DDSK TN+ AT L L G K ++L+ G
Sbjct: 345 PHRVEHVMT-IAGVEYYDDSKGTNVGATVAALNGLGVSQDGGAKHLVLIAGGDGKGQDFS 403
Query: 303 ------AKFGYSGVLIWKTLVNNGL-----SIPCFAVANMKDAVNHARRMATNGDAIVLS 351
AK+ + VLI K + + +++A A +A GDA++LS
Sbjct: 404 PLADPVAKYARAVVLIGKDAASIRAAIAATGVELIDCTTLEEATQKAAELAQAGDAVLLS 463
Query: 352 PGCASFDEFRNFEHRGMVF 370
P CAS D FRN+ HR VF
Sbjct: 464 PACASLDMFRNYAHRAQVF 482
>gi|444400342|ref|ZP_21197749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, partial
[Streptococcus pneumoniae PNI0007]
gi|444266634|gb|ELU72577.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase, partial
[Streptococcus pneumoniae PNI0007]
Length = 418
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 61 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 118
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 119 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 170
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 171 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 227
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 228 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 284
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 285 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 343
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 344 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 403
Query: 365 HRGMVF 370
RG +F
Sbjct: 404 VRGDLF 409
>gi|293392861|ref|ZP_06637179.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
odorifera DSM 4582]
gi|291424720|gb|EFE97931.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
odorifera DSM 4582]
Length = 439
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 165/352 (46%), Gaps = 46/352 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G VGGN+G P+ E + ++Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWAVGVGGNIGLPVLELL---------RQEYQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + +LN+T DH++R+ ++ Y K ++ N K+ ++
Sbjct: 158 ELSSFQLETTYSLHA-AAATILNVTEDHMDRYPFGLQQYRAAKLRIYE---NAKVCVVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G GA G ++ + V V L MK+ GRHN
Sbjct: 213 ADDALTMPVRGADPRCISFGADVGDYHLNRQLGETWLRVHGEKV---LNTREMKLSGRHN 269
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTP---PHRMQIVHRDIQGVTWVDDSKATN 279
Y NA A ++I S++ L T HR Q V D GV W++DSKATN
Sbjct: 270 YTNALAALALADAVNI-----PRASSLTALTTYAGLAHRFQRV-LDHNGVCWINDSKATN 323
Query: 280 LEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA----------- 327
+ +T L L+ + +LLGG K L + L + + + CF
Sbjct: 324 VGSTEAALNGLQVDGTLHLLLGGDGKSADFSPLT-RYLQGDHIRLYCFGRDGAQLAQLRP 382
Query: 328 -VANMKDAVNHARR----MATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
VA D + A R + GD ++LSP CAS D+FRNFE RG F LA
Sbjct: 383 DVATQTDTMEQAMRAIAAVVQPGDMVLLSPACASLDQFRNFEVRGNEFARLA 434
>gi|114045894|ref|YP_736444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
sp. MR-7]
gi|113887336|gb|ABI41387.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
MR-7]
Length = 439
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 174/369 (47%), Gaps = 44/369 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R +L +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVLGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGI 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL + V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLTENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + VS ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 HSEIMPITEVS--------LIGSHNHAN-LLAAMALV-YAVGVDKQVMAKVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFGYSGVLIWK- 314
R ++V GVT+V+DSKATN+ AT L L H +++ GG K L+
Sbjct: 303 RCEVVGVK-AGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFSPLVEPL 361
Query: 315 -------TLVNNG-----LSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
TL +G L V +M AV A +AT+GD ++LSP CAS D + N
Sbjct: 362 TKVTHLITLGRDGNKVAALKEGAIKVDSMAAAVAKAAELATSGDIVLLSPACASLDMYSN 421
Query: 363 FEHRGMVFQ 371
F RG F+
Sbjct: 422 FMARGDDFR 430
>gi|148994421|ref|ZP_01823644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP9-BS68]
gi|168488368|ref|ZP_02712567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SP195]
gi|417678647|ref|ZP_12328045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17570]
gi|418125303|ref|ZP_12762219.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44511]
gi|418191128|ref|ZP_12827633.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47388]
gi|418213866|ref|ZP_12840601.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA54644]
gi|418233890|ref|ZP_12860470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA08780]
gi|419484436|ref|ZP_14024212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43257]
gi|419507765|ref|ZP_14047419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49542]
gi|421219884|ref|ZP_15676739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070425]
gi|421222215|ref|ZP_15679009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070531]
gi|421278464|ref|ZP_15729274.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17301]
gi|421293777|ref|ZP_15744501.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA56113]
gi|421300550|ref|ZP_15751221.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19998]
gi|147927257|gb|EDK78291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP9-BS68]
gi|183573146|gb|EDT93674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SP195]
gi|332074492|gb|EGI84968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17570]
gi|353799347|gb|EHD79666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44511]
gi|353858727|gb|EHE38687.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47388]
gi|353871149|gb|EHE51020.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA54644]
gi|353889329|gb|EHE69100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA08780]
gi|379583947|gb|EHZ48824.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43257]
gi|379612610|gb|EHZ77327.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49542]
gi|395589539|gb|EJG49857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070531]
gi|395589959|gb|EJG50274.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070425]
gi|395881836|gb|EJG92884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17301]
gi|395895109|gb|EJH06085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA56113]
gi|395899974|gb|EJH10913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19998]
Length = 450
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 173/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA-------QTASDKDTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + AF ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVAFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|444921777|ref|ZP_21241608.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507155|gb|ELV07336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 458
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 167/351 (47%), Gaps = 39/351 (11%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TGTNGKSTV T V +L FVGGNLG P A P + V+
Sbjct: 113 IVGITGTNGKSTVTTLVADILEKDDRAVFVGGNLGEPALNLWLAAKAQGICDPLY---VL 169
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E ++ TV+ +LNL PDHL+R++ +YA +K L HM K ++
Sbjct: 170 ELSSFQLET-TEHLDVTVAAILNLAPDHLDRYRDFDHYAHSKFKLL-HMA--KQSVVNVD 225
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE----VPAVGVVSQLQLH--NMKVM 218
+ +L + + + + +A T + +PA + +H ++ +
Sbjct: 226 DTYLMDYVAHQSLSTI------TFSLKNDAATWHMQWQNNLPAAITNGDINIHLTDISLG 279
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HNY N +AA ++ L +GV AL I + PHR +V + GV + +DSKAT
Sbjct: 280 GLHNYAN-VMAACAITQL-LGVKEAALRDAILHYQALPHRCALVAV-MDGVRYYNDSKAT 336
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKFGYSGV-------------LIWKTLVNNGLSIP- 324
NL +T + K +IL G +S + LI + + IP
Sbjct: 337 NLPSTVAAIEGFLEPKWLILGGVTKDQDFSELQTLLDDDNMLGVYLIGEDIATITPHIPV 396
Query: 325 -CFAV--ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
C +V +++ AV + A G+ ++ SP CASFD+F++F RG F+
Sbjct: 397 TCESVYSRDLQSAVTAIAKRAKAGEVVLFSPACASFDQFKSFNDRGEHFER 447
>gi|422596836|ref|ZP_16671115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|330987132|gb|EGH85235.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 448
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 170/364 (46%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSALRAPVAEHCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++ V ++ AV + R+A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVTLVRVETVQAAVEQSARLAQRGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|322376972|ref|ZP_08051465.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. M334]
gi|321282779|gb|EFX59786.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. M334]
Length = 450
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 174/368 (47%), Gaps = 38/368 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELASK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V +I+GV + +DSK+TN+ AT L +K +++ GG +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNNKVILIAGGLDRGNEFDELVPDITGLKKM 375
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
G S + + + S+ ++ DA A +AT GD ++LSP AS+D + N
Sbjct: 376 VILGQSAERVKRAA--DKASVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYAN 433
Query: 363 FEHRGMVF 370
FE RG +F
Sbjct: 434 FEVRGDLF 441
>gi|365959835|ref|YP_004941402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
columnare ATCC 49512]
gi|365736516|gb|AEW85609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
columnare ATCC 49512]
Length = 443
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 181/384 (47%), Gaps = 44/384 (11%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L+Q V+SE++F + +I + +TG+NGK+T +L G+
Sbjct: 74 KAPIVKKLIQKKVPVLSEIEFTSH-FTDAITV-GITGSNGKTTTTMLTYHLLKEGGLNVG 131
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+ GN+G A + KF V+E+SS+Q++ Y P ++++ N++PDHL
Sbjct: 132 LAGNIG--------KSFAWQVADDKFDTYVLELSSFQLDGIETY-KPHIAIITNISPDHL 182
Query: 134 ERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID- 191
+R++ +NY +K + + + ++ +N+ ++ + I K+D
Sbjct: 183 DRYEYKYENYIASKFRITMNQTEEDYLIYDADDEAINKWLQNNTTKAKLIPFSISKKLDF 242
Query: 192 ---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
E T F + + + + + + G+HN NA +AA +V L + + + +
Sbjct: 243 GAYLENDTIKFNI--TNEIFDMPIDEISLEGKHNVKNA-MAAATVAQL-LKIRKSTIRES 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS 308
+ + HR++ V + I V +++DSKATN+ A L D V ++GG K
Sbjct: 299 MSDFQAVEHRLEKVLK-INNVQYINDSKATNVNAAFFAL-DSMSTPTVWIVGGVDKGNDY 356
Query: 309 GVLIWKTLVNNGL-SIPCFAVAN-------------------MKDAVNHARRMATNGDAI 348
L+ LVN + +I C + N M++AV A R+A GD +
Sbjct: 357 AELL--PLVNEKVKAIICLGIDNKKIIESFGDIVDEMVEAGSMEEAVKQAYRLAEKGDTV 414
Query: 349 VLSPGCASFDEFRNFEHRGMVFQE 372
+LSP CASFD F N+E RG F++
Sbjct: 415 LLSPACASFDLFENYEERGRQFKQ 438
>gi|29840624|ref|NP_829730.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
caviae GPIC]
gi|33301359|sp|Q821S1.1|MURD_CHLCV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|29834974|gb|AAP05608.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
caviae GPIC]
Length = 419
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 171/349 (48%), Gaps = 64/349 (18%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+ +TG+ GK+T V F+ +L +G+ AF GN+G P+ +A + + VVE
Sbjct: 105 IGITGSAGKTTTVLFLVHLLRSMGMGAFAMGNIGVPILQAM----------REKGIRVVE 154
Query: 106 VSSYQMEIPNKYFCPTVS--VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+SS+Q+ + P +S +LN++ +HL+ H++++NY+ K ++ + +
Sbjct: 155 ISSFQL-TEQEIETPVLSGAAILNISENHLDYHQSLQNYSEAKRNITKCLQSV------- 206
Query: 164 GNQHLNEAIKGHRFNLAWIGAF--PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
E++ W+G + PG K + + + L LH+ R
Sbjct: 207 ------ESL--------WVGEWLSPGKSYLDYTKEIASVLDKGSALKPLYLHD-----RS 247
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
NY AA ++ V +EA ++ PPHR++ + GV++++DSKAT +
Sbjct: 248 NY----CAAYALANEISNVPLEAFLQALQTFEKPPHRIEYLGEK-DGVSYINDSKATTMS 302
Query: 282 ATCTGLMDLKGHKCVILLGGQAKFGYSGVLI------WKTLVNNGL-----------SIP 324
+ L+ +K +++LGG+ K LI K +V G S+P
Sbjct: 303 SVEKALIAVK-ENVIVILGGRNKGSDFTSLIPILTQTVKHIVAMGECRNEIAQALSGSLP 361
Query: 325 CFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
++++AV+ A+ +A GD I+LSPGCASFD+FR+FE RG F++L
Sbjct: 362 LTQARDLQEAVSMAQSIAQPGDVILLSPGCASFDQFRSFEERGDCFRQL 410
>gi|406947068|gb|EKD78075.1| hypothetical protein ACD_42C00053G0003 [uncultured bacterium]
Length = 451
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 106/362 (29%), Positives = 176/362 (48%), Gaps = 71/362 (19%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKST+ +G+++ + G +A V GN+G P+ +A + P F V V
Sbjct: 110 IVAITGSNGKSTLTVLMGELIKNAGKKAIVCGNIGLPVLDALMQPV------PDFYV--V 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTK--- 157
E+SS+Q++ + TV+VV+N++PDH++R+ T+ +Y +K ++ + +VN
Sbjct: 162 ELSSFQLDTTHS-LTATVAVVINVSPDHMDRYATVDDYRQSKQKIYLNCEHAVVNADEPE 220
Query: 158 -LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216
L F N L ++ N W G G + + K S V+ L L
Sbjct: 221 IWNSLQFKNLPLEFTLQKPHQN-QW-GLCDGFLVRGDKKVIS--------VTDLLLQQ-- 268
Query: 217 VMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQIVHRDIQGVTW 271
RHN N AA+A S+L L + +E+LR+ HR Q+V + I V W
Sbjct: 269 ---RHNNQNFLAALAMGSILKL-------PMEKMLEVLRSFSGLEHRCQLVKK-INEVAW 317
Query: 272 VDDSKATNLEATCTGLMDLKGHKC---VILLGGQAK--------------------FGYS 308
+DSKATN+ A + + C ++L GG +K +G
Sbjct: 318 YNDSKATNVGAAIAAIESMGQSLCGNLILLAGGDSKGVSLTPLQNPIRQYVSHVFLYGKD 377
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
L+ L +G ++ V +++AV A+++A GD ++L+P CAS D++ N+ RG
Sbjct: 378 ADLLENAL--HGCAV-VTRVTCLREAVTEAQKIAKRGDVVLLAPACASLDQYENYAERGR 434
Query: 369 VF 370
F
Sbjct: 435 DF 436
>gi|421527284|ref|ZP_15973887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
nucleatum ChDC F128]
gi|402256492|gb|EJU06971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
nucleatum ChDC F128]
Length = 432
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 184/406 (45%), Gaps = 68/406 (16%)
Query: 9 LEFQLKATGLAC------LLQSGKRVMSELDFAAQ-VIPRSIK--ILAVTGTNGKSTVVT 59
LEF +K+ G+ + + G +V+ E++ A +I + +K I+A+TGTNGKST
Sbjct: 48 LEFFIKSPGIPYNDFVKEVQKRGIKVLDEIEIAYNYMIEKGLKTKIIAITGTNGKSTTTA 107
Query: 60 FVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYF 118
+ MLNH G +A GN+G LSE + +E+SS+Q+E I N F
Sbjct: 108 KISDMLNHAGYKAAYAGNIGRSLSEVLL-------KEKDLDFISLELSSFQLENIEN--F 158
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE---AIKGH 175
P +S+++N+ PDH+ER+K+ Y TK ++ + + + + + IK
Sbjct: 159 KPYISMIINMGPDHIERYKSFDEYYNTKFNITKNQTEDLYFIENIDDVEIEKRASQIKAK 218
Query: 176 RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSV 233
R + + F I E E ++ V +L L G HN N VA +
Sbjct: 219 RIS---VSKFKKADIFVENDKICHEKNSIIDVDKLSLK-----GIHNLENTLFMVATAEI 270
Query: 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH 293
L +D E L + I HR ++ + + +++DSKATN+++T ++ +
Sbjct: 271 L----KIDREKLKEFLMIATPLEHRTELFF-NYGKLKFINDSKATNVDSTKFA---IQAN 322
Query: 294 KCVILLGGQAKFGYS------------------GVLIWKTLVNNGLSIPCFAVANMKDAV 335
K IL+ G G GV+ K + N L + + + V
Sbjct: 323 KNSILICGGYDKGVDLAPLAEMIKENIKEVYLIGVIADK--IENELKKIGYEDSKIHKLV 380
Query: 336 N--------HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
N R + + I+LSP +S+D+F +FEHRG VF+EL
Sbjct: 381 NIENSLQDMKKRFTKESDEVILLSPATSSYDQFNSFEHRGKVFKEL 426
>gi|304383924|ref|ZP_07366381.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
marshii DSM 16973]
gi|304335002|gb|EFM01275.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
marshii DSM 16973]
Length = 443
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 178/371 (47%), Gaps = 43/371 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++SE++FA + K++ +TG+NGK+T + + + G + + GN+GN L
Sbjct: 89 IISEIEFAGRYT--HAKMVCITGSNGKTTTTSLIYHIFREAGYDVGLAGNIGNSL----- 141
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
AL ++ ++E+SS+Q++ F ++++LN+TPDHL+R+ M+NY K
Sbjct: 142 ---ALQVAEDPHAFYIIELSSFQLDDMFD-FRANIAILLNITPDHLDRYDHCMQNYVNAK 197
Query: 147 CHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
+ + + P + L + IK ++ + + + E + + E
Sbjct: 198 MRILQNQTEEDSFIFWNDDPIIKRELQKYDIKAMQYPFSELKENGSIGYIEEGRY-TLEE 256
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
P + Q +L + GRHN +N+ A ++ G G+ + + ++ HR++
Sbjct: 257 PTPFNMEQEEL---SLTGRHNIYNSLAAGIA--GSIAGIKKDVIRKSLSDFPGVEHRLEK 311
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V + + GV +++DSKATN++A C +D ++++GG+ K
Sbjct: 312 VVK-VGGVQYINDSKATNVDA-CWYALDSMRTPTILIIGGKDKGNDYEPIKALVKEKCVG 369
Query: 305 FGYSGVLIWKTLVN-NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
Y G K N + L IP +MK+ + MA GD ++LSP CASFD F+N
Sbjct: 370 LVYLGADNSKLHDNFDHLGIPVRDTHSMKECMEACYAMARPGDTVLLSPCCASFDLFKNM 429
Query: 364 EHRGMVFQELA 374
E RG F+ LA
Sbjct: 430 EDRGNQFKALA 440
>gi|167622393|ref|YP_001672687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
halifaxensis HAW-EB4]
gi|167352415|gb|ABZ75028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
halifaxensis HAW-EB4]
Length = 439
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 176/368 (47%), Gaps = 44/368 (11%)
Query: 25 GKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
G V+ +++ FA +V S K++ +TG+NGK+TV T VG+M G VGGN+G P
Sbjct: 90 GIEVIGDVELFAREVSQGSAKVIGITGSNGKTTVTTLVGEMAKACGCSYAVGGNIGVPAL 149
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
+ +PK ++ ++E+SS+Q+E + C T + LN++ DH++R+ +++Y
Sbjct: 150 DLLL--------EPK-ELYILELSSFQLETTHSLQC-TAATCLNISEDHMDRYSDLESYR 199
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
K L+ +K+ L N+ + + N G ++D + V
Sbjct: 200 QAKLKLYKQ---SKMVLF---NREDALTVPNNPTNQESFG-LDAPEMDAWGISGGMIVH- 251
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQ 260
G + + ++ ++G HN+ N A I D + IE+ +T HR +
Sbjct: 252 -GSSQIMAVSDVALVGSHNHANIIAAMALATAAGIERDFQ-----IEVAKTFSGLAHRCE 305
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFG-----------Y 307
+V +I GVT+V+DSKATN+ AT + L H + +++ GG K
Sbjct: 306 VV-AEIAGVTYVNDSKATNIGATVAAIDGLSEHLGELILIAGGDGKGADFKPLEPVLEKV 364
Query: 308 SGVLIWKTLVNN--GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEH 365
S +++ + L V M +AV A +AT GD ++LSP C+S D + NF
Sbjct: 365 SQLIVLGKDADKIAALKPEAIKVTTMAEAVLKANELATAGDIVILSPACSSLDMYPNFMA 424
Query: 366 RGMVFQEL 373
RG F+ L
Sbjct: 425 RGDEFRSL 432
>gi|374376351|ref|ZP_09634009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Niabella soli DSM
19437]
gi|373233191|gb|EHP52986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Niabella soli DSM
19437]
Length = 445
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 184/371 (49%), Gaps = 48/371 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A + S +I+A+TG+NGK+T + + +L G++A + GN+G ++
Sbjct: 90 VISEIELAYRFAGDS-RIVAITGSNGKTTTTSLIHHILKTGGLDAALVGNIGESFAKQ-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
+AL KP V VVEVSS+Q++ ++ F P ++V+ N+T DHL+R++ NY +K
Sbjct: 147 --VAL-DPKP---VYVVEVSSFQLDDIDR-FRPYIAVLTNITEDHLDRYEYNFNNYIASK 199
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+ + T F +E K +FN+ I P + ++ E A + +
Sbjct: 200 FRIIKNQEATDY----FIYNEDDEVTKASLDKFNIQSI-QLP-ISMENENSAAFIKDGDM 253
Query: 205 GVVS-----QLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
+ + + +++ + G+HN +N A ++ +DI E + ++ + HRM
Sbjct: 254 YIRTGEDFINMSIYDFTLKGKHNQYNTMAAGVTAATMDIRK--EKIREAVQTFQNLEHRM 311
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNN 319
+ V I+GV +++DSKATN+ +T L + +++LGG K G + + +
Sbjct: 312 EHVAT-IRGVEFINDSKATNVNSTWYALESMT-KPTILILGGVDK-GNDYSTMTEMVKEK 368
Query: 320 GLSIPCFAVANMK-------------------DAVNHARRMATNGDAIVLSPGCASFDEF 360
+I C V N K +A A A GD ++LSP CASFD F
Sbjct: 369 VKTIICLGVDNKKIHEAFSGIVPNIIDTASAAEAAGAAFAHAEKGDVVLLSPACASFDLF 428
Query: 361 RNFEHRGMVFQ 371
+N+E RG F+
Sbjct: 429 KNYEDRGTQFK 439
>gi|322380110|ref|ZP_08054363.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthase [Helicobacter
suis HS5]
gi|321147457|gb|EFX42104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthase [Helicobacter
suis HS5]
Length = 423
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 173/378 (45%), Gaps = 54/378 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIK------ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
L+ + K + SE D+ + + K I+ ++GTNGK+T +G +L A V
Sbjct: 70 LVVASKHLCSEYDYIKGLWQTNRKHLPFPTIIFISGTNGKTTTARMLGLLLK--SSNAQV 127
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
GGN+G PL + + I KP + V ++E SS+ + N + P + ++L L+ DHL
Sbjct: 128 GGNIGIPLIDL-YTQIKAEQRKPPY-VWILETSSFTLHYTN-HLVPQIYILLPLSQDHLS 184
Query: 135 RHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA 194
H+ +NY V KL L F Q +GH F A + P VK
Sbjct: 185 WHENHENY-----------VEAKLKPLSFMQQ------EGHVFLHASLKDHPTVKALINP 227
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV-DVEALNSTIEILR 253
F + + Q+ L K+ + A+ ALSV L GV D + LN+ +
Sbjct: 228 PNLLFYQDSKHLAQQMGLQISKIRFEEPFLLDALLALSVAKLYSGVADYDLLNTYM---- 283
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW 313
PHR++I Q TWVDDSKATN++AT L KG ++LGG K G ++
Sbjct: 284 IQPHRIEIFLDQDQN-TWVDDSKATNIDATLKALDRFKGCYIHLILGGDTK-GMDLKPLF 341
Query: 314 KTLVNNGLSIPCFAVA-------------------NMKDAVNHARRMATNGDAIVLSPGC 354
+ L + + I + +++ AV H ++ G +LSP
Sbjct: 342 EVLAHMQIEIYAIGASAPMVMQMAQDYHIRAHLCHDLRIAVEHIKQNLRPGQIGMLSPSA 401
Query: 355 ASFDEFRNFEHRGMVFQE 372
AS D+F +++HRG+ F+E
Sbjct: 402 ASLDQFASYKHRGITFKE 419
>gi|359687842|ref|ZP_09257843.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
licerasiae serovar Varillal str. MMD0835]
gi|418750348|ref|ZP_13306634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
licerasiae str. MMD4847]
gi|418758453|ref|ZP_13314635.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
licerasiae serovar Varillal str. VAR 010]
gi|384114355|gb|EIE00618.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
licerasiae serovar Varillal str. VAR 010]
gi|404272951|gb|EJZ40271.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptospira
licerasiae str. MMD4847]
Length = 449
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 176/373 (47%), Gaps = 49/373 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++ A S K++ VTGT+GKST + +++ GGN+G S+
Sbjct: 90 VVSEVELARAFY--SGKLIGVTGTDGKSTTTSLTAHLVSTDFPGTTAGGNIGLAFSD--- 144
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
C+ KP V+V+E+SSYQ+E VSV+LNL DHLERHK ++NY K
Sbjct: 145 FCL-----KP-VPVSVLELSSYQLEDSGPLEL-NVSVILNLASDHLERHKNLENYFAAKA 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW---IGAFPGVKIDTEAKTASFEVPAV 204
+ H N + L+ ++ E I+G L W I F G + T+A + E
Sbjct: 198 RIVDHS-NPRHTLVT-SSKLFKERIQG----LGWSCKILVF-GREEGTDAVISEEERTIK 250
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
N + G HN N A + L+ IG E + + I + PHR Q V +
Sbjct: 251 TGKEIYDAKNFPLPGGHNLDNLAASILAAEA--IGAKPEHIQNLIGTFKGLPHRFQYVGK 308
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHK-CVILLGGQAK---------FGYSGV---- 310
G+++++DSK+TNL + GL K K ++LGG+ K F SG+
Sbjct: 309 -AAGISFINDSKSTNLHSMLAGLNTWKDKKGTFLILGGRPKVEPLEPLKEFLSSGIGWVL 367
Query: 311 LI------WKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA----IVLSPGCASFDEF 360
LI W +++ L ++++ + + +G A +V SP CASFD +
Sbjct: 368 LIGEARETWAPVISPILGTHLILAGDLEEGFSQIKTAVRSGRARVTSVVFSPACASFDLY 427
Query: 361 RNFEHRGMVFQEL 373
+NFE RG F +L
Sbjct: 428 KNFEERGEHFMKL 440
>gi|333924511|ref|YP_004498091.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333750072|gb|AEF95179.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 462
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 164/365 (44%), Gaps = 35/365 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ EL+ A + I+A+TGTNGK+T + +GQM G V GN+G PL+
Sbjct: 104 VIGELELAYRFA--RAPIVAITGTNGKTTTTSLIGQMFRDAGYHTLVAGNIGLPLASEV- 160
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ + + V EVSS+Q+E + F P V+VVLN+TPDHL+RH +M Y K
Sbjct: 161 ------ENYSRQDIIVAEVSSFQLET-TQSFAPRVAVVLNVTPDHLDRHGSMAEYIRAKS 213
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F+H +L + + E + + ++ + V GV
Sbjct: 214 LIFAHQDQEDWAVLNYDDPVTREMAADCPSQVLFFSRQHILEKGIYVQDGKIMVADQGVT 273
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
++ +++ G HN NA A + + G+ L T+E HR++ V I
Sbjct: 274 EITPVNTLRIPGAHNLENALAAVAAGYAM--GIAATDLARTLESFAGVAHRLEYVAT-ID 330
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------------------FGY 307
GV +++DSK TN +A L D +++ GG+ K G
Sbjct: 331 GVKYINDSKGTNPDAAIKAL-DAYNEPIILIAGGKNKGSDFTQFARKIKEKVRVLIVLGL 389
Query: 308 SGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
G I + G + + AV A + A G+ ++LSP CAS+D F NFE RG
Sbjct: 390 HGYQIEAAARDQGFT-NILQAQDYPQAVRLAHQQARPGEVVLLSPACASWDMFNNFEERG 448
Query: 368 MVFQE 372
+F++
Sbjct: 449 ELFKQ 453
>gi|400290796|ref|ZP_10792823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
ratti FA-1 = DSM 20564]
gi|399921587|gb|EJN94404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
ratti FA-1 = DSM 20564]
Length = 451
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 173/367 (47%), Gaps = 48/367 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P SE A
Sbjct: 99 VITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQPALLSGNIGYPASEVAQ 156
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
++ V+E+SS+Q+ + + F P ++V+ NL P H++ H + +NY K
Sbjct: 157 SAVST-------DTLVMELSSFQL-MGTEKFHPQIAVITNLMPTHIDYHGSFENYVEAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTASFEVPAV 204
++ +M+ +L F NQ L + + R N + K+D E F+ AV
Sbjct: 209 NIQKNMMAADTIILNF-NQELAKDLAA-RTNAKVVPFSTKEKVDGAYLEDGMLCFKGQAV 266
Query: 205 GVVSQLQLHNMKVMGRHNYHNA----AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
++ + V G HN NA AVA LS GV A+ T+ HR+Q
Sbjct: 267 -----MKADELGVPGSHNIENALATIAVAKLS------GVSDGAIKETLAHFGGVKHRLQ 315
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKT 315
+ ++ GV + +DSK+TN+ AT L K +++ GG + LI K
Sbjct: 316 YLG-EVSGVKFYNDSKSTNILATQKALSGFDNPKVILIAGGLDRGNEFDDLIPDLVGLKK 374
Query: 316 LVNNGLSIPCFAVANMKDAVNH------------ARRMATNGDAIVLSPGCASFDEFRNF 363
+V G S P A K V + A A +GD ++LSP AS+D ++NF
Sbjct: 375 MVILGESAPRVKRAADKAKVAYLEAEDVAGAAKLAFESAESGDIVLLSPANASWDMYKNF 434
Query: 364 EHRGMVF 370
E RG F
Sbjct: 435 EVRGDEF 441
>gi|225627884|ref|ZP_03785920.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
Cudo]
gi|261219196|ref|ZP_05933477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
M13/05/1]
gi|261315608|ref|ZP_05954805.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
pinnipedialis M163/99/10]
gi|261318046|ref|ZP_05957243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
pinnipedialis B2/94]
gi|261322257|ref|ZP_05961454.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
M644/93/1]
gi|261758612|ref|ZP_06002321.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
gi|265989077|ref|ZP_06101634.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
pinnipedialis M292/94/1]
gi|340791041|ref|YP_004756506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
pinnipedialis B2/94]
gi|225617047|gb|EEH14093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
Cudo]
gi|260924285|gb|EEX90853.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
M13/05/1]
gi|261294947|gb|EEX98443.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
M644/93/1]
gi|261297269|gb|EEY00766.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
pinnipedialis B2/94]
gi|261304634|gb|EEY08131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
pinnipedialis M163/99/10]
gi|261738596|gb|EEY26592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
gi|264661274|gb|EEZ31535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
pinnipedialis M292/94/1]
gi|340559500|gb|AEK54738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
pinnipedialis B2/94]
Length = 467
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 161/349 (46%), Gaps = 35/349 (10%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+A+TGTNGKST + ++ G + +GGN+G + P +F V VE
Sbjct: 117 IAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTAI------LTLEPPCADRFYV--VE 168
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGN 165
SSYQ+++ PT ++LNLTPDHL+RH +M+NYA K L + +G+
Sbjct: 169 CSSYQIDL-APSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGIDDAYC 227
Query: 166 QHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNM-KVMGRHNY 223
Q + + + G + I + A A G + ++ L + + G HN
Sbjct: 228 QAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNA 287
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
NA A ++ L G+ +E +++ ++ HRM+ V R + V +V+DSKATN EAT
Sbjct: 288 QNALAAIVAC--LSAGLSLEEIHAGLKSFPGLAHRMEQVGRRGK-VLFVNDSKATNAEAT 344
Query: 284 CTGLMDLKGHKCVILLGGQAKFG------------YSGVLIWKTLVNN----GLSIPCFA 327
L ++GG K G LI + G ++P
Sbjct: 345 APALSSFP-QNIYWIVGGVPKAGGINSLTAFFPRVAKAYLIGEAAAQFAATLGGAVPFEI 403
Query: 328 VANMKDAVNHARRMATNGDA----IVLSPGCASFDEFRNFEHRGMVFQE 372
+ AV HA A N A ++LSP CASFD+F+NFE RG F++
Sbjct: 404 SDTLAAAVAHATGDAGNDAAPEPVVLLSPACASFDQFQNFEKRGDAFRD 452
>gi|363582952|ref|ZP_09315762.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
bacterium HQM9]
Length = 451
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 180/371 (48%), Gaps = 47/371 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FAA+ + ++ +TG+NGK+T G +L+ + GN+G+ ++A
Sbjct: 95 VISEIEFAAKYT--NANVIGITGSNGKTTTTMLTGHVLSSGSKGVTMAGNIGDSFAKAVL 152
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
+ + V+E+SS+Q++ N+ F P ++V+LNL+PDHL+R+ Y +K
Sbjct: 153 EDVT--------ETFVLELSSFQLDGINE-FTPHIAVLLNLSPDHLDRYNYDYSKYIASK 203
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L + +T + ++ + IK ++ FP ++ E + +F V
Sbjct: 204 FRLIKNQTDTDYFIYDADDKEIKNYIKNNK---PKAQCFP-FSMEKELENGAFIKNKHIV 259
Query: 207 VSQ-------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
++ + ++ + G+HN NA AA+S +G+ + + ++ + HR+
Sbjct: 260 INMNNEQEIIVSESSLSLKGKHNTKNAMAAAMS--ARLVGIRKQTIRESLTNFQGVSHRL 317
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNN 319
+ V + + V +++DSKATN+ A L +K V ++GG K G ++K +
Sbjct: 318 ETVLK-VNNVQYINDSKATNVNAAYFALEAVK-TPVVWIVGGVDK-GNDYSELYKLVNEK 374
Query: 320 GLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFDEF 360
+I C V N M++AV + +A D ++LSP CASFD F
Sbjct: 375 VKAIVCLGVDNSRIVGSFGNCVDTIVETQSMQEAVKISHALADRNDTVLLSPCCASFDLF 434
Query: 361 RNFEHRGMVFQ 371
+N+E RG F+
Sbjct: 435 KNYEDRGNQFK 445
>gi|444414617|ref|ZP_21210870.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0199]
gi|444281479|gb|ELU86796.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae PNI0199]
Length = 450
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDKNTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMAAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|406660222|ref|ZP_11068356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cecembia
lonarensis LW9]
gi|405556100|gb|EKB51069.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cecembia
lonarensis LW9]
Length = 450
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 171/382 (44%), Gaps = 58/382 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G V+ EL+FA + K++A+TGTNGK+T +L G+ + GN+G
Sbjct: 84 FEKGLPVIDELEFAFRF--SKGKVIAITGTNGKTTTALLTYHLLKKGGLNVGLAGNVGKS 141
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMK 140
+ + V+EVSS+Q++ K+F P ++++ N+TPDHL+R+ +
Sbjct: 142 WAGQLV--------EQDHDWWVLEVSSFQID-GFKHFKPAIAMLTNITPDHLDRYGYQLD 192
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI-----------GAFPGVK 189
NY L+K LF +M + ++ + N+ I + G F G+
Sbjct: 193 NYILSKMSLFQNMDLDQAAIINADDLLTNKGISFKPLTMDCYPVSLKTSQNQGGYFDGLN 252
Query: 190 IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTI 249
+D AK + V+ + G+HN N+ +A L + GVD A+ +
Sbjct: 253 LDLIAKGKKISISHQEVI---------LKGKHNMLNSMMATLGAIL--AGVDEMAIREGL 301
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG 309
+ + HRM+ V I GV +V+DSK TN++AT L D + + GG K
Sbjct: 302 QDFKNAAHRMEAVAT-IHGVAFVNDSKGTNVDATAYAL-DSYQQPLIWIAGGVDKGNDYS 359
Query: 310 VLIWKTLVNNGLS-IPCFAVANMK-------------------DAVNHARRMATNGDAIV 349
VL L+ + + C V N K AV A GD ++
Sbjct: 360 VL--DPLIKGKVKMLICLGVDNEKLKKAFEGKVKQIKETKDIHQAVRWAFENGQAGDLVL 417
Query: 350 LSPGCASFDEFRNFEHRGMVFQ 371
LSP CASFD F+N+E RG F+
Sbjct: 418 LSPACASFDLFKNYEDRGEQFK 439
>gi|386288564|ref|ZP_10065704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [gamma
proteobacterium BDW918]
gi|385278119|gb|EIF42091.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [gamma
proteobacterium BDW918]
Length = 450
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 167/352 (47%), Gaps = 46/352 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T V +M + G VGGNLG P AL + ++ V+
Sbjct: 111 IVAITGSNGKSTVTTLVAEMAVNAGWRCAVGGNLGTP---------ALELLDDRAELYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E + V+ VLN++ DHL+ H +M Y K +F ++N L
Sbjct: 162 ELSSFQLE-RCAFIGAEVATVLNVSEDHLDHHGSMIAYHQAKHRIFRDCKKVVINRDDAL 220
Query: 161 LPFGNQHLNEAIKGHRFNLAW--IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ +A++ F L AF + D E + A+ + L + +K+
Sbjct: 221 ---STPLVPDAVEKWNFGLGRSDFRAFGLMDEDGE------QYLALAREALLPVSALKIA 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A G+ + A+ ST+ + HR Q V + QG+ + +DSK T
Sbjct: 272 GSHNISNAMAALALG--AAAGLPMSAMLSTLTEFKGLSHRCQFVAQ-WQGLRFYNDSKGT 328
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSI--------------- 323
N+ A + L L G ++L+ G G + TL++ G ++
Sbjct: 329 NVGAAVSALRGLSGAGKLVLIAGGVGKGADFKPLIDTLLSVGRAVVFIGEAGPAMNALLD 388
Query: 324 ---PCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
P ++M AV A A +GD ++LSP CASFD FRN+EHRG VF E
Sbjct: 389 GRLPSQICSDMPAAVRAAAAYAESGDVVLLSPACASFDMFRNYEHRGAVFAE 440
>gi|443475155|ref|ZP_21065114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudanabaena
biceps PCC 7429]
gi|443020078|gb|ELS34081.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudanabaena
biceps PCC 7429]
Length = 463
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 176/386 (45%), Gaps = 57/386 (14%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G + E++ A + + + I + +TGTNGK+TV + + G++A GN+G P E
Sbjct: 93 GLDTIGEIELAWRYL-KHIPWVGITGTNGKTTVTSLTAAIFQAAGLKAIACGNIGFPACE 151
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A + KP + +A E+SSYQ+E + P + + TPDHL RH T++ Y
Sbjct: 152 IALQVLQ-NQLKPDWIIA--ELSSYQIE-STQTVLPEIGIWTTFTPDHLNRHYTLEAYRN 207
Query: 145 TKCHLF---SHMV--NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
K L +H+V L FG +A+ N G+ I+ F
Sbjct: 208 IKASLIDRSAHIVLNGNDPNLCKFGAAMWPKALWTGVDNQVVEAHTDGICIND--GWVKF 265
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
A+ +S QL +G+HN N +VAA + G+ E ++ I + PH
Sbjct: 266 RGEAIFPISHWQL-----LGKHNRQNLLMSVAAAKL----AGISSEHIDFAISQFKGVPH 316
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLV 317
R++ + R +G+ +++DSKATN +A GL +K V++ GGQ K G + W +
Sbjct: 317 RLEHI-RLYEGIAFINDSKATNYDAAEVGLKAVK-PPVVLIAGGQPKQGDADA--WLEQI 372
Query: 318 NN--------GLSIPCFA-------------VANMKDAVNHARRMATNG---------DA 347
G + P FA V ++ AV A ++A +
Sbjct: 373 RQRAIAVLLIGEAAPLFAEMLNDAGFKNYEIVETLERAVKQAAKIAHSRAHNHPSQPLPT 432
Query: 348 IVLSPGCASFDEFRNFEHRGMVFQEL 373
++ SP CASFD+F NFE RG F++L
Sbjct: 433 VLFSPACASFDQFANFEQRGDRFRQL 458
>gi|307704498|ref|ZP_07641406.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK597]
gi|307621911|gb|EFO00940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK597]
Length = 450
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 174/368 (47%), Gaps = 38/368 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LTKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELASK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V +I+GV + +DSK+TN+ AT L K +++ GG +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGLKKM 375
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
G S + + G+S ++ DA A +AT GD ++LSP AS+D + N
Sbjct: 376 VILGQSAERVKRAADKAGVS--YVDATDIADATRKAYELATQGDVVLLSPANASWDMYAN 433
Query: 363 FEHRGMVF 370
FE RG +F
Sbjct: 434 FEVRGDLF 441
>gi|399116607|emb|CCG19414.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
asinigenitalis 14/45]
Length = 481
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 113/392 (28%), Positives = 181/392 (46%), Gaps = 63/392 (16%)
Query: 27 RVMSELDFAAQVI-------PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
+++SE+D I IKI+ +TGTNGK+TV + V M + G++A GN
Sbjct: 102 KIISEIDLFMHAILDHNKVNSTPIKIIGITGTNGKTTVTSMVRLMCEYSGLKAVAAGN-- 159
Query: 80 NPLSEAAFHCIALPSSKPKF-QVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT 138
+S +A I+ + K+ V +E+SS Q+ ++ S +LN+T DH++ H
Sbjct: 160 --ISPSALTVISEFEQQNKWPDVIALELSSAQLFYTSE-LKLDASTILNITQDHIDWHGG 216
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHL--NEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
M+ Y +K +F F Q + +E K + N AWI + + E
Sbjct: 217 MQAYKESKLKIFD-----------FSEQKIASDEQAKEYGLNKAWIYTEALPQKENEIGV 265
Query: 197 ASFEVPAVGVVSQLQL---HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
+Q L MK+ G HN N A+AA+ L +G+ +E L + +
Sbjct: 266 NELNGMKWFCTTQKNLMPVDAMKIRGHHNVLN-AMAAIQ-LCQSVGLPLEPLLAALRDYE 323
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW 313
PHR V RDI GV ++DDSK TN+ AT + + V++LGG+ K G ++
Sbjct: 324 AQPHRCTYV-RDINGVIFIDDSKGTNVGATVAAINGMY-RNLVVILGGEGK-GQDFTPLY 380
Query: 314 KTL--------------------------VNNGL---SIPCFAVANMKDAVNHARRMATN 344
++L V +GL S+P V +++ AV+ A +A
Sbjct: 381 ESLQKRVPDGLRGLVLLGKDKDLLKSSFHVKDGLFANSVPVKEVQSIEQAVHDAYALAKA 440
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
GD ++LSP CAS D F+N+ RG+ F + +
Sbjct: 441 GDLVLLSPACASTDMFKNYHERGVKFADAVYE 472
>gi|392307113|ref|ZP_10269647.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
citrea NCIMB 1889]
Length = 441
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 184/383 (48%), Gaps = 52/383 (13%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L + +A + G V+ +++ A++ + ++AVTG+NGKSTVV+ ++ G++
Sbjct: 83 LYESSVAHAIAKGVEVIGDIELFARL--NTTPVVAVTGSNGKSTVVSLATEVFKAAGLKV 140
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
+GGN+G + L V V+E+SS+Q+E + C + +++LN+T DH
Sbjct: 141 GLGGNIGTSV---------LTLLDEPHDVYVLELSSFQLETTDSLVCRS-AMILNVTEDH 190
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV---- 188
++R+ Y K ++ H+ Q + A + F+ + G V
Sbjct: 191 MDRYPDFAGYCAAKQRIYKHV-----------EQLVFNADDEYTFSASKQGTSVSVDSGD 239
Query: 189 -KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNS 247
++ T+ A F A G V L + ++ V+GRHN NA +A +++L + +E
Sbjct: 240 YRVLTDNGMAYFS--AYGEV-LLPVDSLGVVGRHNQFNA-LAVMALLA-PFNLPIEHFKQ 294
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKF 305
+ + HR Q+V + QGV + +DSKATN+ AT L L K +++LGG AK
Sbjct: 295 AFKSFKGLEHRCQLV-AEFQGVRYFNDSKATNVGATVAALESLACERGKILLILGGDAK- 352
Query: 306 GYSGVLIWKTLVNNGLSIPCFA---------------VANMKDAVNHARRMATNGDAIVL 350
G + L +I CF V ++ AV A ++ +GD+++L
Sbjct: 353 GADLQPLVTPLTRYCKAIFCFGQDGKQFMGLHEKAYLVESLDAAVQQAAVLSCSGDSVLL 412
Query: 351 SPGCASFDEFRNFEHRGMVFQEL 373
+P CAS D + N+ RG F +L
Sbjct: 413 APACASIDMYANYMVRGEAFCKL 435
>gi|289624980|ref|ZP_06457934.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aesculi str. NCPPB 3681]
gi|289647038|ref|ZP_06478381.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aesculi str. 2250]
gi|422583888|ref|ZP_16659006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330868713|gb|EGH03422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. aesculi str. 0893_23]
Length = 448
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 170/364 (46%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSALRAPVAEHCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++ V ++ AV + R+A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDTVTLVRVDTVQAAVEQSARLAQRGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|168492240|ref|ZP_02716383.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC0288-04]
gi|183573524|gb|EDT94052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC0288-04]
Length = 450
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/360 (29%), Positives = 173/360 (48%), Gaps = 34/360 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P S+ A
Sbjct: 99 VLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYPASQVA- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + Y K
Sbjct: 156 ---QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
++ + M +L F NQ L + + A + F ++ A ++ G V
Sbjct: 209 NIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQLYFRGEV 265
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
+ + + V G HN N A+A ++V L GVD + + T+ HR+Q V DI+
Sbjct: 266 V-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQFVD-DIK 321
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTLVNNGLS 322
GV + +DSK+TN+ AT L K V++ GG + L+ K +V G S
Sbjct: 322 GVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKMVILGQS 381
Query: 323 ------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ ++ DA A +AT GD ++LSP AS+D + NFE RG +F
Sbjct: 382 AERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFEVRGDLF 441
>gi|323701286|ref|ZP_08112961.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
nigrificans DSM 574]
gi|323533888|gb|EGB23752.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
nigrificans DSM 574]
Length = 462
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 164/365 (44%), Gaps = 35/365 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ EL+ A + I+A+TGTNGK+T + +GQM G V GN+G PL+
Sbjct: 104 VIGELELAYRFA--RAPIVAITGTNGKTTTTSLIGQMFRDAGYHTLVAGNIGLPLASEV- 160
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ + + V EVSS+Q+E + F P V+VVLN+TPDHL+RH +M Y K
Sbjct: 161 ------ENYSRQDIIVAEVSSFQLET-TQSFAPRVAVVLNVTPDHLDRHGSMAEYIRAKS 213
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
+F+H +L + + E + + ++ + V GV
Sbjct: 214 LIFAHQDQEDWAVLNYDDPVTREMAADCPSQVLFFSRQHILEKGIYVQDGKIMVADQGVT 273
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
++ +++ G HN NA A + + G+ L T+E HR++ V I
Sbjct: 274 EITPVNTLRIPGAHNLENALAAVAAGYAM--GIAATDLARTLESFAGVAHRLEYVAT-ID 330
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------------------FGY 307
GV +++DSK TN +A L D +++ GG+ K G
Sbjct: 331 GVKYINDSKGTNPDAAIKAL-DAYNEPIILIAGGKNKGSDFTQFARKIKEKVRVLIVLGL 389
Query: 308 SGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
G I + G + + AV A + A G+ ++LSP CAS+D F NFE RG
Sbjct: 390 HGYQIEAAARDQGFT-NILQAQDYPQAVRLAHQQARPGEVVLLSPACASWDMFNNFEERG 448
Query: 368 MVFQE 372
+F++
Sbjct: 449 ELFKQ 453
>gi|257483449|ref|ZP_05637490.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|422682234|ref|ZP_16740501.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|331011575|gb|EGH91631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
Length = 448
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 170/364 (46%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+N KSTV T VG+M G VGGNLG P AL ++ V+
Sbjct: 111 VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------ALDLLSDDVELYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y L K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
+KV G HN A A LG +G+ +A+ +++ HR Q + R+ GV +
Sbjct: 266 RELKVRGAHN--QANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWL-REHDGVHYY 322
Query: 273 DDSKATNLEATCTGL----MDLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIEGLGSDIDG-KLVLIAGGDGKGADFSALRAPVAEHCRAAVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++ V ++ AV + R+A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQAL---GDAVTLVRVDTVQAAVEQSARLAQRGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|270292242|ref|ZP_06198456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. M143]
gi|270279288|gb|EFA25131.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. M143]
Length = 450
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 173/368 (47%), Gaps = 38/368 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELATR--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + V G HN N A+A ++V L G+D + + T+ HR+Q
Sbjct: 260 YFRGEVI-MAADEIGVPGSHNVEN-ALATIAVAKLR-GIDNQIIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304
V +IQGV + +DSK+TN+ AT L K +++ GG +
Sbjct: 317 VD-EIQGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGLKRM 375
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
G S + + G++ ++ DA A +AT GD ++LSP AS+D + N
Sbjct: 376 VILGQSAERVKRAAEKAGVA--YVDATDIADATRKAYELATQGDVVLLSPANASWDMYAN 433
Query: 363 FEHRGMVF 370
FE RG +F
Sbjct: 434 FEVRGDLF 441
>gi|449928887|ref|ZP_21801394.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 3SN1]
gi|449164959|gb|EMB67993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 3SN1]
Length = 451
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 181/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD I+LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVILLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|414158129|ref|ZP_11414423.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
F0441]
gi|410870674|gb|EKS18631.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
F0441]
Length = 450
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 173/371 (46%), Gaps = 44/371 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + SI + +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLISEASI--IGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ ++M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNNMTAADFLVLNF-NQDLAKEL-ATKTQATVVPFSTKEKVDGAYLENGQLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMTASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQIIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
+Q V +I+GV + +DSK+TN+ AT L K +++ GG +
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G S I + G + ++ DA A +AT GD ++LSP AS+D
Sbjct: 373 KKMVILGQSAERIKRAAEKAG--VAYVDAIDIADATRKAYELATEGDVVLLSPANASWDM 430
Query: 360 FRNFEHRGMVF 370
+ NFE RG +F
Sbjct: 431 YANFEVRGDLF 441
>gi|113971900|ref|YP_735693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
sp. MR-4]
gi|113886584|gb|ABI40636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
MR-4]
Length = 439
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 174/369 (47%), Gaps = 44/369 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGKSTV T VG+ML G+ VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKSTVTTLVGEMLREAGMAVAVGGNIGI 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL + V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLTENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLFSH---MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + VS ++G HN+ N +AA++++ +GVD + + H
Sbjct: 253 HSEIMPITEVS--------LIGSHNHAN-LLAAMALV-YAVGVDKQVMAKVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFGYSGVLIWK- 314
R ++V GVT+V+DSKATN+ AT L L H +++ GG K L+
Sbjct: 303 RCEVVGVK-AGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGADFSPLVEPL 361
Query: 315 -------TLVNNGLSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
TL +G I V +M AV A +AT+GD ++LSP CAS D + N
Sbjct: 362 TKVTHLITLGRDGNKIAALKEGAIKVDSMAAAVAKAAELATSGDIVLLSPACASLDMYSN 421
Query: 363 FEHRGMVFQ 371
F RG F+
Sbjct: 422 FMARGDDFR 430
>gi|292489359|ref|YP_003532246.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
CFBP1430]
gi|292898417|ref|YP_003537786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
ATCC 49946]
gi|428786324|ref|ZP_19003804.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
ACW56400]
gi|291198265|emb|CBJ45371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
ATCC 49946]
gi|291554793|emb|CBA22618.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
CFBP1430]
gi|426275170|gb|EKV52908.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
ACW56400]
Length = 438
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 164/351 (46%), Gaps = 44/351 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P+ L + Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAQAAGWQVGVGGNIGLPV---------LTLLQQPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +
Sbjct: 158 ELSSFQLET-TRSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENATVCVVN---- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ + ++G GA G + + + V V++ ++H ++G+HN
Sbjct: 213 ADDAMTIPVRGADARCLSFGADVGDYHLTRQQGSTWLRVQGEKVLNTDEMH---LVGQHN 269
Query: 223 YHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y N AA+A +GL + AL + + HR Q+VH GV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRASSLTALTT----FKGLAHRFQLVHEH-NGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA------------ 327
+T L L + +LLGG K L + L + + I CF
Sbjct: 325 GSTEAALNGLHPAGILWLLLGGDGKSADFSPLT-RYLQGDRIRIYCFGRDGAELAALRPE 383
Query: 328 ----VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M AV GD ++LSP CAS D+F+NFE RG F +LA
Sbjct: 384 IAVQTETMAAAVRQIATRVQPGDMVLLSPACASLDQFKNFEQRGDQFAQLA 434
>gi|450119998|ref|ZP_21865426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans ST6]
gi|449230787|gb|EMC30035.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans ST6]
Length = 451
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 182/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ+L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQNLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|160880607|ref|YP_001559575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
phytofermentans ISDg]
gi|189082875|sp|A9KLU2.1|MURD_CLOPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|160429273|gb|ABX42836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
phytofermentans ISDg]
Length = 454
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 161/359 (44%), Gaps = 52/359 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI A+TGTNGK++ T VG+++ FV GN+G P ++ + + V V
Sbjct: 110 KIAAITGTNGKTSTTTLVGEIMKTYYKSVFVVGNIGVPYTQ-------MVKNTENDSVTV 162
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + F P VS +LN+TPDHL RH TM+ Y K ++ + +L +
Sbjct: 163 AEMSSFQLETI-ETFRPDVSAILNITPDHLNRHHTMEAYIEAKVNITKNQTKEDTCILNY 221
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVK------------IDTEAKTASFEVPAVGVVSQLQ 211
+ +L + W + ++ D E + +V
Sbjct: 222 EDSYLRTVSGRIPATILWFSSVRELERGLFLRENHIIYRDDEKECVVCDV---------- 271
Query: 212 LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271
+ ++++G+HNY N A + L + +D + + R HR++ V +GV +
Sbjct: 272 -NELQIIGKHNYENVMAAVGIAIALKVPMDF--IREAVTKFRGVEHRIEYVTTK-RGVKY 327
Query: 272 VDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG------------VLIWKTLVNN 319
+DSK TN +A+ + ++ +I G Y VL+ +T
Sbjct: 328 YNDSKGTNPDASIQAIKAMQTKTLLIGGGYDKDSDYDDWIKAFDDKVTYLVLLGQTREKI 387
Query: 320 GLSIPCFAVAN------MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+ V N + +AV+ A G+ ++LSP CAS+ F+++E RGM+F+E
Sbjct: 388 ANAAKRLGVKNIVLVDSLSEAVDFCAEHAGVGETVLLSPCCASWGMFKDYEERGMLFKE 446
>gi|418166309|ref|ZP_12802965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17971]
gi|353829905|gb|EHE10035.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17971]
Length = 450
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDK---NTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|169334623|ref|ZP_02861816.1| hypothetical protein ANASTE_01026 [Anaerofustis stercorihominis DSM
17244]
gi|169259340|gb|EDS73306.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerofustis
stercorihominis DSM 17244]
Length = 458
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 110/359 (30%), Positives = 180/359 (50%), Gaps = 57/359 (15%)
Query: 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVE 105
+A+TGTNGK+T T VG++ + G + +V GN+GN A V +E
Sbjct: 116 IAITGTNGKTTTTTLVGEIFKNAGYDTYVNGNIGNSFINDA-------EKGDDNSVYALE 168
Query: 106 VSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH-------MVNTKL 158
VSSYQ+E+ +K F P ++++ N+TPDHLERH T + Y K ++F + +VN +
Sbjct: 169 VSSYQLELNDK-FKPDIAIMTNITPDHLERHSTFEEYVRVKGNVFVNQDENDYLIVNKED 227
Query: 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA----KTASFEVPAVGVVSQL-QLH 213
+L L+E K VK D A K + + G V L ++
Sbjct: 228 KIL----TGLSENAKSKVLTFT-------VKEDKNANAYLKDENIIIDFKGEVYPLIDIN 276
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
+K+ G HN N A+L+ + GV+ E L +T++ ++ HR++ V + G+ +++
Sbjct: 277 ELKLYGLHNVMNVMAASLAAVVK--GVEKETLINTLKNFKSVEHRIEYVDT-VDGIEYIN 333
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCF-AVAN-M 331
DSK TN++AT T + +K K V++LGG K L+ K++ +N I + AV N +
Sbjct: 334 DSKGTNVDATVTAMKAMK-KKTVLMLGGYDKMTPFDELV-KSINDNIKCIVLYGAVQNKI 391
Query: 332 KDAVN-------------------HARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
KD ++ A +A G+ ++LSP +SFD F ++E RG F+
Sbjct: 392 KDTLDKYDYKNYHMVQGGFDEVCIKATSLADKGECVLLSPATSSFDMFDDYEQRGRAFK 450
>gi|450160942|ref|ZP_21880270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 66-2A]
gi|449239404|gb|EMC38127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 66-2A]
Length = 451
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 182/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N+KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNVKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|450107170|ref|ZP_21860910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF14]
gi|449222338|gb|EMC22067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF14]
Length = 451
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 181/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++VV NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVVTNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|312173524|emb|CBX81778.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
ATCC BAA-2158]
Length = 438
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 164/351 (46%), Gaps = 44/351 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P+ L + Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAQAAGWQVGVGGNIGLPV---------LTLLQQPAQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + +LN+T DH++R+ M+ Y K ++ + +
Sbjct: 158 ELSSFQLET-TRSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENATVCVVN---- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ + ++G GA G + + + V V++ ++H ++G+HN
Sbjct: 213 ADDAMTIPVRGADARCLSFGADVGDYHLTRQQGSTWLRVQGEKVLNTDEMH---LVGQHN 269
Query: 223 YHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
Y N AA+A +GL + AL + + HR Q+VH GV W++DSKATN+
Sbjct: 270 YTNALAALALADAVGLPRASSLTALTT----FKGLAHRFQLVHEH-NGVRWINDSKATNV 324
Query: 281 EATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA------------ 327
+T L L + +LLGG K L + L + + I CF
Sbjct: 325 GSTEAALNGLHPAGILWLLLGGDGKSADFSPLT-RYLQGDRIRIYCFGRDGAELAALRPE 383
Query: 328 ----VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M AV GD ++LSP CAS D+F+NFE RG F +LA
Sbjct: 384 IAVQTETMAAAVRQIATRVQPGDLVLLSPACASLDQFKNFEQRGDQFAQLA 434
>gi|306829146|ref|ZP_07462336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
mitis ATCC 6249]
gi|304428232|gb|EFM31322.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
mitis ATCC 6249]
Length = 450
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 175/370 (47%), Gaps = 42/370 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI----- 312
R+Q V +I+G+ + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 313 RLQFVD-EIKGIKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITG 371
Query: 313 WKTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
K +V G S + ++ DA A +AT GD ++LSP AS+D +
Sbjct: 372 LKRIVILGQSAERVKRAADKAGVAYVDAKDIADATRKAYELATQGDVVLLSPANASWDMY 431
Query: 361 RNFEHRGMVF 370
NFE RG +F
Sbjct: 432 ANFEVRGDLF 441
>gi|450056566|ref|ZP_21842115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML4]
gi|449206689|gb|EMC07385.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML4]
Length = 451
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 182/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ+L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQNLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|19704790|ref|NP_604352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|19715127|gb|AAL95651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 454
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 187/403 (46%), Gaps = 62/403 (15%)
Query: 9 LEFQLKATGLAC------LLQSGKRVMSELDFAAQ-VIPRSIK--ILAVTGTNGKSTVVT 59
LEF +K+ G+ + + G +++ E++ A +I + +K I+A+TGTNGKST
Sbjct: 70 LEFFIKSPGIPYNDFVKEVQKRGIKILDEIEIAYNYMIEKGLKTKIIAITGTNGKSTTTA 129
Query: 60 FVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYF 118
+ MLNH G +A GN+G LSE + +E+SS+Q+E I N F
Sbjct: 130 KISDMLNHAGYKATYAGNIGRSLSEVLL-------KEKDLDFISLELSSFQLENIEN--F 180
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN 178
P +S+++N+ PDH+ER+K+ Y TK ++ + + ++ + + K +
Sbjct: 181 KPCISMIINIGPDHIERYKSFDEYYNTKFNITKNQTEDLYFIENIDDEEIEKRAKQIKAK 240
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGL 236
+ F I E + + V +L L G HN N VA +L L
Sbjct: 241 RISVSKFKKADIFVENDKIYHDKDDIIDVDKLSLK-----GIHNLENTLFMVATAEILKL 295
Query: 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV 296
D E L + I HR ++ + + +++DSKATN+++T ++ +K
Sbjct: 296 ----DREKLKEFLMIATPLEHRTELFF-NYGKLKFINDSKATNVDSTKFA---IQANKNS 347
Query: 297 ILLGGQAKFGYS------------------GVLIWKTLVNNGLSIPCF------AVANMK 332
IL+ G G GV+ K + N L + + N++
Sbjct: 348 ILICGGYDKGVDLAPLAEMIKENIKEVYLIGVIADK--IENELKKVGYEDNKIHKLVNIE 405
Query: 333 DAVNHARRMAT--NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+++ R+ T + + I+LSP +S+D+F +FEHRG VF+EL
Sbjct: 406 NSLQDMRKRFTKDSDEVILLSPATSSYDQFNSFEHRGKVFKEL 448
>gi|119505122|ref|ZP_01627198.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
proteobacterium HTCC2080]
gi|119459104|gb|EAW40203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
proteobacterium HTCC2080]
Length = 453
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 167/375 (44%), Gaps = 50/375 (13%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
RVM ++D V S ++ +TG+NGKSTV V ML+ G VGGN G P
Sbjct: 98 RVMGDIDLF--VAAASAPVIGITGSNGKSTVTAMVASMLSACGKRVAVGGNFGTP----- 150
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
AL V+E+SS+Q+E V+ VLN++ DHL+RH +M Y K
Sbjct: 151 ----ALDLLDQAVDFYVLELSSFQLERAQPLKL-AVATVLNVSADHLDRHGSMPRYHHAK 205
Query: 147 CHLF--SHMV--NTKLGL-LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
+F +H V N L LP + G + W P +D V
Sbjct: 206 HKIFQGAHAVVANRADSLTLPL--------LDGGTRQVLWRPTDP--DLDEFGVRQLDGV 255
Query: 202 PAV--GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
P V G + +K+ G HN +N A + LD+ +E L + ++ PHR
Sbjct: 256 PYVCCGFTPLFPVSELKLKGMHNLNNVLAALALGVALDL--PLERLIAGLKDFSGLPHRC 313
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNN 319
++V D GV+W++DSK TN+ AT L L + V+L+ G G + + N+
Sbjct: 314 ELVLDD-AGVSWINDSKGTNVGATRAALAGLGAQENVVLIAGGVGKGQDFTALLPEVRNH 372
Query: 320 ------------------GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
G P V +++DAV A +A GD ++LSP CASFD +
Sbjct: 373 CRRVLTLGESAREIELALGAHTPVQRVDSLEDAVAKAAALAQAGDVVLLSPACASFDLYS 432
Query: 362 NFEHRGMVFQELAFS 376
F+ RG F++ S
Sbjct: 433 GFKARGDAFRDAVMS 447
>gi|392383194|ref|YP_005032391.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Azospirillum
brasilense Sp245]
gi|356878159|emb|CCC99027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Azospirillum
brasilense Sp245]
Length = 467
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/360 (30%), Positives = 161/360 (44%), Gaps = 43/360 (11%)
Query: 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQ 100
R + +TGTNGKST T +G ++ G VGGNLG P + PS
Sbjct: 108 RDSAYIGITGTNGKSTTTTLIGHVMEAAGRRIAVGGNLGTP-------ALTFPSVGAGGS 160
Query: 101 VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160
V+E+SSYQ+E+ V+V+LN+TPDHL RH M Y K +F + +
Sbjct: 161 Y-VLEMSSYQLEL-TYSITFDVAVLLNITPDHLARHGGMDGYVAAKKLIFHRQTKPRTAV 218
Query: 161 LPFGN---QHLNEAIKGHRFNLAW----IGAFPGVKIDTEAKTASFEVPAVGVVSQLQLH 213
+ + + + E +K + W +G+ G + A V++L
Sbjct: 219 IGVDDPTCRAIWEDLKAKGDQVIWPVSALGSVAGGVYAADGWLVDDTFGAAERVAELAAF 278
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++G HN+ NAA A + GV A+ + + HR Q+V R I GV +V+
Sbjct: 279 P-ALLGTHNWQNAAAAYAAC--KAAGVPAPAIVAAMTTFPGLAHRQQLV-RTIDGVRFVN 334
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGYSGVLIWKTLVNN----GLSIPCFAV 328
DSKATN +AT L +LGGQAK G G+ + V + G + FA
Sbjct: 335 DSKATNADATEKALATFD--PIYWILGGQAKETGLDGLEAYAPRVRHAFLIGEASDRFAA 392
Query: 329 ANMKDAVNHAR----RMATN------------GDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+ V H R +A N G ++LSP CAS+D+F NFE RG F +
Sbjct: 393 WLEANKVPHTRCGTLDVAVNAAAELALAEALPGACVLLSPACASWDQFANFEKRGAAFAD 452
>gi|225860677|ref|YP_002742186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae Taiwan19F-14]
gi|298229802|ref|ZP_06963483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254818|ref|ZP_06978404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298502480|ref|YP_003724420.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae TCH8431/19A]
gi|387787859|ref|YP_006252927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae ST556]
gi|417312264|ref|ZP_12098980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04375]
gi|417686144|ref|ZP_12335422.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41301]
gi|417695848|ref|ZP_12345028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47368]
gi|418082571|ref|ZP_12719773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44288]
gi|418084770|ref|ZP_12721956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47281]
gi|418091305|ref|ZP_12728450.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44452]
gi|418100543|ref|ZP_12737631.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7286-06]
gi|418107064|ref|ZP_12744104.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41410]
gi|418109649|ref|ZP_12746678.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49447]
gi|418118629|ref|ZP_12755589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA18523]
gi|418150258|ref|ZP_12787013.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14798]
gi|418156982|ref|ZP_12793700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16833]
gi|418159338|ref|ZP_12796041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17227]
gi|418168782|ref|ZP_12805428.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19077]
gi|418170909|ref|ZP_12807536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19451]
gi|418195720|ref|ZP_12832200.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47688]
gi|418197592|ref|ZP_12834057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47778]
gi|418220613|ref|ZP_12847269.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47751]
gi|418222965|ref|ZP_12849610.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5185-06]
gi|418227283|ref|ZP_12853903.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 3063-00]
gi|419422185|ref|ZP_13962404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43264]
gi|419424727|ref|ZP_13964928.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7533-05]
gi|419426853|ref|ZP_13967036.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5652-06]
gi|419435569|ref|ZP_13975665.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 8190-05]
gi|419437649|ref|ZP_13977722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13499]
gi|419444309|ref|ZP_13984324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19923]
gi|419446430|ref|ZP_13986435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7879-04]
gi|419449115|ref|ZP_13989112.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 4075-00]
gi|419450671|ref|ZP_13990658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP02]
gi|419488318|ref|ZP_14028071.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44386]
gi|419501435|ref|ZP_14041121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47628]
gi|419520641|ref|ZP_14060238.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05245]
gi|419527533|ref|ZP_14067077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17719]
gi|421272333|ref|ZP_15723180.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR55]
gi|421287184|ref|ZP_15737950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA58771]
gi|254766062|sp|C1CQG4.1|MURD_STRZT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|225728254|gb|ACO24105.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae Taiwan19F-14]
gi|298238075|gb|ADI69206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae TCH8431/19A]
gi|327390416|gb|EGE88757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA04375]
gi|332075981|gb|EGI86447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41301]
gi|332203845|gb|EGJ17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47368]
gi|353758008|gb|EHD38601.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44288]
gi|353760005|gb|EHD40587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47281]
gi|353766678|gb|EHD47218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44452]
gi|353773252|gb|EHD53751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7286-06]
gi|353780541|gb|EHD60998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41410]
gi|353784942|gb|EHD65362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA49447]
gi|353792214|gb|EHD72587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA18523]
gi|353817379|gb|EHD97583.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA14798]
gi|353825003|gb|EHE05170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA16833]
gi|353825207|gb|EHE05373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17227]
gi|353836701|gb|EHE16789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19077]
gi|353837079|gb|EHE17165.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19451]
gi|353862247|gb|EHE42180.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47688]
gi|353864792|gb|EHE44703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47778]
gi|353877482|gb|EHE57325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47751]
gi|353880237|gb|EHE60053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5185-06]
gi|353883656|gb|EHE63462.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 3063-00]
gi|379137601|gb|AFC94392.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
pneumoniae ST556]
gi|379540357|gb|EHZ05530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13499]
gi|379540544|gb|EHZ05716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA05245]
gi|379566478|gb|EHZ31466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA17719]
gi|379572002|gb|EHZ36959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA19923]
gi|379589516|gb|EHZ54355.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43264]
gi|379590433|gb|EHZ55271.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44386]
gi|379601796|gb|EHZ66568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47628]
gi|379613970|gb|EHZ78680.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7879-04]
gi|379617238|gb|EHZ81931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 8190-05]
gi|379618306|gb|EHZ82981.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 5652-06]
gi|379620627|gb|EHZ85282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 7533-05]
gi|379624173|gb|EHZ88806.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 4075-00]
gi|379624570|gb|EHZ89201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP02]
gi|395877892|gb|EJG88961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR55]
gi|395889593|gb|EJH00600.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA58771]
Length = 450
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDKNTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMAAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|168486808|ref|ZP_02711316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC1087-00]
gi|418145904|ref|ZP_12782689.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13637]
gi|418184467|ref|ZP_12821015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47283]
gi|419510138|ref|ZP_14049782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP141]
gi|419529962|ref|ZP_14069493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40028]
gi|421212703|ref|ZP_15669665.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070108]
gi|421214890|ref|ZP_15671821.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070109]
gi|183570252|gb|EDT90780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae CDC1087-00]
gi|353815842|gb|EHD96055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13637]
gi|353852065|gb|EHE32055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47283]
gi|379574702|gb|EHZ39640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40028]
gi|379633331|gb|EHZ97900.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP141]
gi|395581110|gb|EJG41583.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070108]
gi|395582449|gb|EJG42911.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070109]
Length = 450
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDK---NTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|419428954|ref|ZP_13969123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11856]
gi|379552214|gb|EHZ17304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11856]
Length = 450
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QISTDKNTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMAAADFLVLNF-NQDLAKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|424835881|ref|ZP_18260540.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
sporogenes PA 3679]
gi|365977751|gb|EHN13849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
sporogenes PA 3679]
Length = 458
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 176/379 (46%), Gaps = 45/379 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G + SE++ + P KI VTG++GK+T T V +ML G + +VGGN+G PL
Sbjct: 99 EAGAYITSEMEEFIKYCPA--KIFGVTGSDGKTTTTTLVYEMLKKEGYKTWVGGNIGTPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
A + + V+E+SS+Q+ + P +S++ NL+P+HL+ HK + Y
Sbjct: 157 -------FANIEEMKEDHMVVLELSSFQLMTMD--VSPEISLITNLSPNHLDVHKDFEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++F + N L +L ++ N + + L I F V+ + S
Sbjct: 208 VEAKKNIFKYQENNDLLVLNKDDELTN---RMEKEALGNILKFSLVEKVYDGACLSNNKL 264
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ ++K+ GRHN N +AA ++ + +D ++ HR + +
Sbjct: 265 TILGKEVCDSKDIKLKGRHNIANL-LAAFCMVNKYVSID--SMKYVATNFSGVEHRCEFI 321
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------AKFGYSGV-- 310
R++ GV + +DS A++ T GL K VIL+ G A+ GY +
Sbjct: 322 -REVNGVKYYNDSIASSPSRTLAGLNAF--EKPVILIAGGYDKKIPFEPLAEEGYDKIKT 378
Query: 311 LIW-------------KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
LI K +++ I V +M++AV A ++ GD I LSP CASF
Sbjct: 379 LILMGDTKSKIKSAFEKVILDKKCKIEIVMVNSMEEAVKVADDISEKGDIITLSPACASF 438
Query: 358 DEFRNFEHRGMVFQELAFS 376
D + NFE RG F+ + S
Sbjct: 439 DMYPNFEIRGNEFRNMVNS 457
>gi|363892027|ref|ZP_09319200.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium CM2]
gi|361964663|gb|EHL17685.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacteriaceae
bacterium CM2]
Length = 449
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 166/342 (48%), Gaps = 44/342 (12%)
Query: 59 TFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKY 117
+ +G + +V GN+GN A I+L K F + E+SSYQ+E I N
Sbjct: 120 SMLGDIYKKYDENTYVVGNIGN----AVLSSISLAKPKANF---ITELSSYQLETIVN-- 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN---EAIKG 174
F ++V+LN+TPDHL RHKTM+NY K ++ + + +L ++ ++ E IK
Sbjct: 171 FRVHIAVILNITPDHLSRHKTMENYKNAKYNIAKNQIEGDFLVLNKDDESIDINLENIKS 230
Query: 175 HRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAAL 231
+ GV DTE + + + + +++ ++ ++G+HN N +A +
Sbjct: 231 KVIYFSMKEKLKNGVYYDTEKGSI---ISTINGKEEEIIKVKDIHLLGKHNIQNT-LACV 286
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+V LD + + I+ + HR+Q V R++ V +V+DSK TN+++T + +
Sbjct: 287 TVSILD-NIPTALIAEAIKDFKAVKHRLQKV-REVDDVIYVNDSKGTNIDSTLKAIESI- 343
Query: 292 GHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANM 331
+ +++ GG K FG + LI T + ++ N+
Sbjct: 344 DNDIILIAGGYDKMLEFDDLIKGFNGKVKTLLLFGATKKLIRDTALKYDYK-DIISLKNL 402
Query: 332 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
K V A+ +A GD ++LSP CAS+D +++FE RG F EL
Sbjct: 403 KQCVQVAKIIAQKGDVVLLSPACASWDMYQSFEERGDEFIEL 444
>gi|90580226|ref|ZP_01236033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Photobacterium angustum S14]
gi|90438528|gb|EAS63712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
angustum S14]
Length = 446
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 190/406 (46%), Gaps = 69/406 (16%)
Query: 5 WLFLLEFQLKATGLACLL-------QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + G+A ++G ++ +++ A+ + + ++A+TG+NGKSTV
Sbjct: 65 WLLSADLIVASPGIALATPELVLAAEAGVEIIGDIELFAREVDK--PVVAITGSNGKSTV 122
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
+ VG+M GI VGGN+G AA +A + + V+E+SS+Q+E
Sbjct: 123 TSLVGEMAKEAGINVGVGGNIGF----AALDMLA-----QQHSLYVLELSSFQLETTTSL 173
Query: 118 FCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR 176
T +V LNL+ DH++R+ + Y+ K +F H KL + F L A K +
Sbjct: 174 EL-TAAVYLNLSEDHMDRYPGGLAQYSQAKMRIFDH---AKLAV--FNRDDL--ATKPTQ 225
Query: 177 FNLAWIGAFPGVKIDTEAKTASF----EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232
F+ GA D + E AV + + + ++ ++GRHN N A
Sbjct: 226 FS----GAMTSFGFDDQDYGIVLVNGKEWLAVNGEAVMAVADIALVGRHNVANCLAALAL 281
Query: 233 VLGLDIGVDVEALNSTIEILRTPPHRMQI-VHRDIQGVTWVDDSKATNLEATCTGL--MD 289
G+ +A ++ HR Q+ V+R GV WV+DSKATNL +T L +
Sbjct: 282 ADA--AGIPRDAACRAMQRYTGLAHRCQLAVNR--HGVRWVNDSKATNLASTLAALNGLQ 337
Query: 290 LKGHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVA 329
L+G K +L+GG +K FG L + +V+N +S V
Sbjct: 338 LEG-KLHLLMGGDSKGAEFSELKPVLADLNVQLYSFGRDRHL-FNDVVDNAIS-----VE 390
Query: 330 NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 375
M DA+ R +GD ++LSP CAS+D+F NF RG F E A
Sbjct: 391 TMSDAMVCISRTVQSGDMVLLSPACASWDQFANFMARGDAFVEQAI 436
>gi|374340110|ref|YP_005096846.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinitoga
piezophila KA3]
gi|372101644|gb|AEX85548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinitoga
piezophila KA3]
Length = 432
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 174/374 (46%), Gaps = 49/374 (13%)
Query: 20 CLLQSGKRVMSELDFAAQVI----PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75
L S ++ +E++FA I P ++ + VTGTNGKST G +L+ FV
Sbjct: 79 ILKTSNIKISTEIEFAWNYIKKHNPEAV-FVGVTGTNGKSTTTQLTGHILSST-YNTFVC 136
Query: 76 GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135
GN+G PLS A P K ++ VVEVSS+Q+ F P +SV+LNL PDHL
Sbjct: 137 GNIGTPLSSA-------PLDK---EIYVVEVSSFQL-FWGSTFTPEISVLLNLMPDHLNW 185
Query: 136 HKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
H +++ Y TK ++ V + G +N ++G+ NL I F G + K
Sbjct: 186 HSSLEEYYNTKINMVKRTV------MGNGMAFVNANLRGYFDNLQRIVLF-GENGNIVWK 238
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTIEILRT 254
E + + ++N+ + Y +AA+ V L LDI +V + I +T
Sbjct: 239 NNMIEAGNIVI----NINNLSLQFEL-YQEDVMAAVGVALNLDISKNV--IEEFISTFKT 291
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW- 313
HR++ + + G+ + +DSKATN A + + + +L G K +L+
Sbjct: 292 LEHRLEFIE-EYNGIRFFNDSKATNAHAAYSAYKSFRNKGYIAMLSGIPKNEDMTMLLQE 350
Query: 314 ------KTLVNNGL--SIPCFAVAN-------MKDAVNHARRMATNGDAIVLSPGCASFD 358
KT+V + I + N + A A A GD+++LSP ASFD
Sbjct: 351 LQKYAKKTIVFGKMVDEIKKYEFFNNYIITDTFEKAFELALEWAERGDSVILSPAGASFD 410
Query: 359 EFRNFEHRGMVFQE 372
F N++ RG +F+E
Sbjct: 411 LFENYKERGRIFKE 424
>gi|358466909|ref|ZP_09176686.1| hypothetical protein HMPREF9093_01161 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357068565|gb|EHI78566.1| hypothetical protein HMPREF9093_01161 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 432
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 110/418 (26%), Positives = 191/418 (45%), Gaps = 92/418 (22%)
Query: 9 LEFQLKATGLAC------LLQSGKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVT 59
+EF +K+ G+ + + G +V+ E++ A + KI+A+TGTNGKST
Sbjct: 48 IEFFIKSPGIPYNNFVKEVQKRGIKVLDEIEVAYNYMTEKNLKTKIIAITGTNGKSTTTA 107
Query: 60 FVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYF 118
+ +LNH G + GN+G LSE H + +E+SS+Q+E + N F
Sbjct: 108 KISDLLNHAGYKTCYAGNIGRSLSEVLLH-------EKDLDFVSLELSSFQLENVEN--F 158
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN---EAIKGH 175
P +S+++N+ PDH+ER+K+ Y TK ++ + + + ++ + + IK
Sbjct: 159 RPYISMIINMGPDHIERYKSFDEYYDTKFNISKNQDEKQYFIENIDDEEIEKRAKQIKAK 218
Query: 176 RFNLAWIGAFPGVKIDTEAKTASFEVP----AVGVVSQLQLHNMKVMGRHNYHNA--AVA 229
R ++ +++K A+ V VG + + + + G HN N VA
Sbjct: 219 RISV------------SKSKEANVYVANDKIYVGKDCIIDVDKLSLKGIHNVENTLFMVA 266
Query: 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT------ 283
+L +D E L + I HR ++ + V +++DSKATN+++T
Sbjct: 267 TSEIL----NIDREKLKEFLMIATPLEHRTELFF-NYGKVKFINDSKATNVDSTKFAIQA 321
Query: 284 -------CTGL---MDL--------KGHKCVILLGGQA--------KFGYSGVLIWKTLV 317
C G +DL + K V L+G A K GY I K
Sbjct: 322 NKDSILICGGYDKGVDLAPLAEMIKENIKEVYLIGVIADKIETELKKVGYEAAKIHK--- 378
Query: 318 NNGLSIPCFAVANMKDA-VNHARRMATNGDAIV-LSPGCASFDEFRNFEHRGMVFQEL 373
+ N++++ ++ +R + D ++ LSP +S+D+F +FEHRG VF+EL
Sbjct: 379 ----------LENIENSLLDMKKRFTKDSDEVILLSPATSSYDQFNSFEHRGKVFKEL 426
>gi|325286923|ref|YP_004262713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
lytica DSM 7489]
gi|324322377|gb|ADY29842.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
lytica DSM 7489]
Length = 444
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 172/370 (46%), Gaps = 46/370 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA++ +I + +TG+NGK+T V +L G+ + GN+G+ ++
Sbjct: 89 VISEIEFASKYTDATI--IGITGSNGKTTTTMMVNHILKEEGLHVGMAGNIGDSYAKMV- 145
Query: 88 HCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145
S+ F V+E+SS+Q++ I + F P ++++ N+TPDHL+R+ NY +
Sbjct: 146 -------SENNFDYYVLEISSFQLDGIVD--FKPHIAIITNITPDHLDRYNYEFDNYITS 196
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA---KTASFEVP 202
K + + + ++ L ++ H I F K E K +
Sbjct: 197 KFRIAENQTEDDYLIYDADDEVLVSWLEKHPVKSKLI-PFSLTKQFKEGVCLKNNKIHIT 255
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNA-AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
++ N+ + G+HN N A +A S L + + + ++IE + HR++
Sbjct: 256 TQNNTIEMATDNLALEGKHNLKNTMAASAASKL---VNIRKATIRASIENFQGAAHRLES 312
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGL 321
V + I V +V+DSKATN+ AT L +K I+ G Y ++ LV +
Sbjct: 313 VLK-IAHVHYVNDSKATNVNATYYALESMKSATVWIVGGVDKGNDYKSLM---PLVREKV 368
Query: 322 -SIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
+I C V N M +AV A ++ GD ++LSP CASFD F
Sbjct: 369 KAIICLGVDNSKIIEEFGNVVDLLVETKSMNEAVKMAYKIGQRGDTVLLSPACASFDLFE 428
Query: 362 NFEHRGMVFQ 371
N+E RG F+
Sbjct: 429 NYEDRGNQFK 438
>gi|340789125|ref|YP_004754590.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Collimonas
fungivorans Ter331]
gi|340554392|gb|AEK63767.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Collimonas
fungivorans Ter331]
Length = 508
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 171/388 (44%), Gaps = 64/388 (16%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKF-QVA 102
K++A+TGTNGK+TV + G + G+ V GN+ S AA + K QV
Sbjct: 124 KVIAITGTNGKTTVTSLTGLLCERAGLTVQVAGNI----SPAALDVLRNALEKDALPQVW 179
Query: 103 VVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS----HMVNTKL 158
V+E+SS+Q+ + +LN+T DHL+ H M++Y K +FS ++N
Sbjct: 180 VLELSSFQLHATCNLHA-DAATILNITQDHLDWHGDMESYVADKARIFSADTVRVLNRDD 238
Query: 159 GL-LPFGNQH-----LNEAIKGHRFNLA------WIG-AFPGVKIDT----EAKTASFEV 201
L + F N + +E + G F L W+ A PG + + +K +
Sbjct: 239 PLTMQFNNGNSISFGFDEPLDGDCFGLVSDNGMQWLSVAVPGDEEERVEKRRSKKEQLAL 298
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
V V + +++ GRHN NA A +D+ L + PHR+++
Sbjct: 299 LPVSVKRLMPADALRIRGRHNAANALAALALCRAIDL--PFAPLLHGLREYHGEPHRVEL 356
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKC---------VILLGGQAK-------- 304
V I GV + DDSK TN+ AT L L G C +++ GG+ K
Sbjct: 357 VTT-IGGVEYYDDSKGTNVGATVAALNGL-GRGCDGDGNASRLLLIAGGEGKGQDFSPLA 414
Query: 305 ------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
G +I + + A +++AV A +A GDA++LSP
Sbjct: 415 APLATYGRALLLIGRDAPVIRAAVEKQAAGVAMVDCATLEEAVTRAAELAYAGDAVLLSP 474
Query: 353 GCASFDEFRNFEHRGMVF----QELAFS 376
CASFD FRN+ HR VF +ELA S
Sbjct: 475 ACASFDMFRNYAHRAQVFVDAVRELALS 502
>gi|450033869|ref|ZP_21834020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans M21]
gi|450078223|ref|ZP_21850907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N3209]
gi|449196944|gb|EMB98175.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans M21]
gi|449210272|gb|EMC10742.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N3209]
Length = 451
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 181/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|30316070|sp|Q8RDQ1.2|MURD_FUSNN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
Length = 432
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 187/403 (46%), Gaps = 62/403 (15%)
Query: 9 LEFQLKATGLAC------LLQSGKRVMSELDFAAQ-VIPRSIK--ILAVTGTNGKSTVVT 59
LEF +K+ G+ + + G +++ E++ A +I + +K I+A+TGTNGKST
Sbjct: 48 LEFFIKSPGIPYNDFVKEVQKRGIKILDEIEIAYNYMIEKGLKTKIIAITGTNGKSTTTA 107
Query: 60 FVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYF 118
+ MLNH G +A GN+G LSE + +E+SS+Q+E I N F
Sbjct: 108 KISDMLNHAGYKATYAGNIGRSLSEVLL-------KEKDLDFISLELSSFQLENIEN--F 158
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN 178
P +S+++N+ PDH+ER+K+ Y TK ++ + + ++ + + K +
Sbjct: 159 KPCISMIINIGPDHIERYKSFDEYYNTKFNITKNQTEDLYFIENIDDEEIEKRAKQIKAK 218
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGL 236
+ F I E + + V +L L G HN N VA +L L
Sbjct: 219 RISVSKFKKADIFVENDKIYHDKDDIIDVDKLSLK-----GIHNLENTLFMVATAEILKL 273
Query: 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV 296
D E L + I HR ++ + + +++DSKATN+++T ++ +K
Sbjct: 274 ----DREKLKEFLMIATPLEHRTELFF-NYGKLKFINDSKATNVDSTKFA---IQANKNS 325
Query: 297 ILLGGQAKFGYS------------------GVLIWKTLVNNGLSIPCF------AVANMK 332
IL+ G G GV+ K + N L + + N++
Sbjct: 326 ILICGGYDKGVDLAPLAEMIKENIKEVYLIGVIADK--IENELKKVGYEDNKIHKLVNIE 383
Query: 333 DAVNHARRMAT--NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+++ R+ T + + I+LSP +S+D+F +FEHRG VF+EL
Sbjct: 384 NSLQDMRKRFTKDSDEVILLSPATSSYDQFNSFEHRGKVFKEL 426
>gi|340753370|ref|ZP_08690156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
2_1_31]
gi|229422962|gb|EEO38009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
2_1_31]
Length = 432
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 189/418 (45%), Gaps = 92/418 (22%)
Query: 9 LEFQLKATGLAC------LLQSGKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVT 59
+EF +K+ G+ + + G +V+ E++ A + KI+A+TGTNGKST
Sbjct: 48 IEFFIKSPGIPYNDFVKEVQKRGIKVLDEIEVAYNYMVEKNLKTKIIAITGTNGKSTTTA 107
Query: 60 FVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYF 118
+ +LNH G +A GN+G LSEA H + +E+SS+Q+E + N F
Sbjct: 108 KISDLLNHAGYKACYAGNIGRSLSEALLH-------EKDLDFVSLELSSFQLENVEN--F 158
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN---EAIKGH 175
P +S+++N+ PDH+ER+K+ Y TK ++ + + + + + + IK
Sbjct: 159 RPYISMIINMGPDHIERYKSFDEYYDTKFNIAKNQNENQYFIENIDDVEIEKRAKQIKAK 218
Query: 176 RFNLAWIGAFPGVKIDTEAKTASFEVPA----VGVVSQLQLHNMKVMGRHNYHNA--AVA 229
R ++ +++K A+ V VG ++ + + G HN N VA
Sbjct: 219 RISV------------SKSKEANVYVEDNKIYVGKDFIIEADKLSLKGIHNLENTLFMVA 266
Query: 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT------ 283
+L +D E L + + HR ++ + V +++DSKATN+++T
Sbjct: 267 TAEIL----NIDREKLKEFLMVATPLEHRTELFF-NYGKVKFINDSKATNVDSTKFAIQA 321
Query: 284 -------CTGL---MDL--------KGHKCVILLGGQA--------KFGYSGVLIWK-TL 316
C G +DL + K V L+G A K GY I K
Sbjct: 322 NKDSILICGGYDKGVDLAPLAEMIKENIKEVYLIGVIADKIETELKKVGYEASKIHKLET 381
Query: 317 VNNGLSIPCFAVANMKDAVNHARRMATNGDAIV-LSPGCASFDEFRNFEHRGMVFQEL 373
+ N L ++ +R + D ++ LSP +S+D+F +FEHRG VF+EL
Sbjct: 382 IENSL-------------LDMKKRFTKDSDEVILLSPATSSYDQFNSFEHRGKVFKEL 426
>gi|410614114|ref|ZP_11325165.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
psychrophila 170]
gi|410166385|dbj|GAC39054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Glaciecola
psychrophila 170]
Length = 435
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 170/375 (45%), Gaps = 54/375 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+++G V+ +++ AQ S ++A+TG+NGKSTV V M G + +GGN+G P
Sbjct: 84 IEAGVHVIGDIELFAQF--NSCPVIAITGSNGKSTVTHLVADMCKAAGKKVLMGGNIGVP 141
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ L + V V+E+SS+Q+E P V+ VLN+T DHL+RH +
Sbjct: 142 V---------LDLLEQTADVIVLELSSFQLETTYSLM-PQVATVLNITEDHLDRHGDLAT 191
Query: 142 YALTKCHLFSH---MVNTKLGLLPF---GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAK 195
Y K ++ + MV + +L + + + +W + +D
Sbjct: 192 YQKIKLSIYQNSQFMVCNREDILSYPINAKATMTYGLSQSSSGFSWDKEQANILLDEHFF 251
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
L + ++G HN N AA L G+D +++ +
Sbjct: 252 --------------LDSKHCLLVGAHNMLNIQAAA--ALAKVFGIDDDSIRQGAQQFGGL 295
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL----MDLKGHKCVILLGGQAKFGYSGVL 311
PHR Q V + V W++DSKATN+ AT + ++KG K +++ GG+ K V+
Sbjct: 296 PHRCQTVAM-LNNVRWINDSKATNVGATLAAINGLVSNIKG-KLILIAGGEGKGADFSVM 353
Query: 312 ---------IWKTLVNNGLSIPCFAVANMK-----DAVNHARRMATNGDAIVLSPGCASF 357
+ TL +G I C N+K +AV A + + GD ++LSP CAS
Sbjct: 354 AECLTQSVGLLITLGKDGDKIACLHPDNIKVQTIQEAVLVAAKHSQVGDVVLLSPACASL 413
Query: 358 DEFRNFEHRGMVFQE 372
D F +++ RG F +
Sbjct: 414 DMFVSYQQRGDCFAD 428
>gi|397649275|ref|YP_006489802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans GS-5]
gi|449908643|ref|ZP_21793867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans OMZ175]
gi|449991922|ref|ZP_21822098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NVAB]
gi|449996510|ref|ZP_21823572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans A9]
gi|450011793|ref|ZP_21829330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans A19]
gi|450024083|ref|ZP_21831009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U138]
gi|450064063|ref|ZP_21845242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML5]
gi|450088536|ref|ZP_21854823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NV1996]
gi|450109960|ref|ZP_21861820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM6]
gi|450125361|ref|ZP_21867618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U2A]
gi|450132356|ref|ZP_21870010.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML8]
gi|392602844|gb|AFM81008.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans GS-5]
gi|449153225|gb|EMB56912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML8]
gi|449180393|gb|EMB82551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NVAB]
gi|449183015|gb|EMB85014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans A9]
gi|449189095|gb|EMB90773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans A19]
gi|449192413|gb|EMB93835.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U138]
gi|449204026|gb|EMC04849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML5]
gi|449216447|gb|EMC16565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NV1996]
gi|449225715|gb|EMC25301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM6]
gi|449232544|gb|EMC31652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U2A]
gi|449262780|gb|EMC60223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans OMZ175]
Length = 451
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 181/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|450175250|ref|ZP_21885041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM1]
gi|449247112|gb|EMC45400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM1]
Length = 451
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 181/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|323486714|ref|ZP_08092035.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
symbiosum WAL-14163]
gi|323692147|ref|ZP_08106390.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
symbiosum WAL-14673]
gi|355623454|ref|ZP_09047199.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium sp.
7_3_54FAA]
gi|323400095|gb|EGA92472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
symbiosum WAL-14163]
gi|323503721|gb|EGB19540.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
symbiosum WAL-14673]
gi|354822332|gb|EHF06694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium sp.
7_3_54FAA]
Length = 448
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 179/381 (46%), Gaps = 36/381 (9%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L A + L ++G + SE+ A K+ A+TGTNGK+T G+++
Sbjct: 78 LDAPFVTVLDEAGVPIWSEIQLAYHCAKG--KLAAITGTNGKTTTTALTGEIMRSFYDSV 135
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
FV GN+G P + H + S V V EVSS+Q+E F P VS +LN+TPDH
Sbjct: 136 FVVGNIGEPYTA---HALETEES----SVTVAEVSSFQLETIMD-FRPNVSAILNITPDH 187
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT 192
L+RHKTM+ Y K + + + +L + + L E + + N+ + + +K
Sbjct: 188 LDRHKTMECYTQVKESITKNQKDGDTCVLNYDDTVLREFGETLKINVVYFSSREKLKKGY 247
Query: 193 EAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
+ V+++ + +K++GRHN+ N V A + +++ V +E + I
Sbjct: 248 YLEDGKIVYNDGSKVTEIVDISELKLLGRHNHEN--VMAAVAISMNMDVPLEKIQEVIRK 305
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF------ 305
HR++ V GV + +DSK TN +A + + G +++ GG K
Sbjct: 306 FEAVEHRIEFVTERF-GVKYYNDSKGTNPDAAMQAIKAMPG-PTILIAGGYDKHSEFDEW 363
Query: 306 --GYSGVLIWKTLV------------NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 351
+ G + + L+ +G + +A ++ +AV A GD ++LS
Sbjct: 364 IESFDGKVRYLVLIGQTRDKIAECAKRHGFTDIMYA-EDLLEAVQVCASYANPGDNVLLS 422
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CAS+ +F+NFE RG F+E
Sbjct: 423 PACASWGQFKNFEERGTKFKE 443
>gi|308069882|ref|YP_003871487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
polymyxa E681]
gi|305859161|gb|ADM70949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
polymyxa E681]
Length = 473
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 181/407 (44%), Gaps = 83/407 (20%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G V++E++ A + I+ +TG+NGK+T T+VG++L G+ V GN+G P
Sbjct: 93 VELGIEVVTEVEVAYHLC--KAPIIGITGSNGKTTTTTWVGKLLEASGMNPIVAGNIGTP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ EAA + + VVE+SS+Q++ K F PTV+ +LN+ HL+ H M++
Sbjct: 151 VCEAAVDAKS-------DEWMVVELSSFQLK-GTKDFRPTVACLLNVAETHLDYHGGMED 202
Query: 142 YALTKCHLFSH-------MVN------------TKLGLLPFG-NQHLNEAIKGHRFNLAW 181
Y +K LF++ +VN K LLPF + L E + A
Sbjct: 203 YVASKARLFANQTAADTAVVNWDDPVCRELVPYIKAKLLPFSMTERLQEGV------FAD 256
Query: 182 IGAFPGVKIDTEAKTASFEV-----PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236
P V D E + P +GV + + GR N NA A +
Sbjct: 257 PPYIPDVTDDIERSIVYRDGNGVLHPIIGVAE------IGLPGRFNVENALAACAIAIAA 310
Query: 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----- 291
+ L + R HR++ V + GV + ++SKATN +AT L K
Sbjct: 311 G--AEPANLAEPLSTFRGVEHRLEYV-LEHAGVAYYNNSKATNSKATMMALSSFKQPIVL 367
Query: 292 --------------------GHKCVILLGGQ----AKFGYSGVLIWKTLVNNGLSIPCFA 327
G K V+LLG A+ + +V+NG A
Sbjct: 368 IAGGLDRGSDYTELVPSLQEGVKAVVLLGETRHKLAERAQQAGIEHVKVVDNGED----A 423
Query: 328 VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
A + +AVN A A GD ++LSP CAS+D FR++E RG +F+E A
Sbjct: 424 AATLVEAVNKAAEFAETGDVVLLSPACASWDMFRSYEERGRIFKEAA 470
>gi|188994489|ref|YP_001928741.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
gingivalis ATCC 33277]
gi|226722944|sp|B2RIE9.1|MURD_PORG3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|188594169|dbj|BAG33144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
gingivalis ATCC 33277]
Length = 450
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 184/381 (48%), Gaps = 64/381 (16%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++SE++FA + ++ +TG+NGK+T ++ L G++ + GN+G L+
Sbjct: 93 IVSEIEFAGRYT--DAFMVCITGSNGKTTTTMWLYHTLCKAGLDVGLAGNVGFSLARQVA 150
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ P + V+E+SS+Q++ N Y F V+++LN+TPDHL+R+
Sbjct: 151 Y-----DPHPYY---VIELSSFQLD--NMYDFRANVAILLNITPDHLDRYD--------- 191
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK----IDTEAKTASF 199
H F K+ + NQ + + F W+ P V EA+T +
Sbjct: 192 -HRFELYAEAKMRIT--RNQQPEDCFIYWEDDPFISRWVAEHPPVARLLPFAMEARTDN- 247
Query: 200 EVPAVGVVSQLQLHNMK-----------VMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ ++L + N+ + G HN HNA A++ +DI EA+
Sbjct: 248 TTAWINEKNELVVMNLNSPFVMDEELLALSGMHNRHNAMATAIAAKAMDIK--NEAIREA 305
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS 308
++ + PHR++ + R ++GV +++DSKATN+ +T L +K +IL G Y+
Sbjct: 306 LQDFKNVPHRLEKIAR-VKGVDYINDSKATNVNSTWYALESMKTRVILILGGTDKGNDYT 364
Query: 309 GV----------LIWKTLVNNGL------SIPCFAVA-NMKDAVNHARRMATNGDAIVLS 351
+ LI+ + N L I A A +M +AV+ A +MA+ GD ++LS
Sbjct: 365 DIENLVLSKVDGLIFLGIDNEKLHKFFDGKISRIADACSMHEAVSLAYKMASKGDTVLLS 424
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CASFD F+N+E RG F++
Sbjct: 425 PACASFDLFQNYEDRGDQFRK 445
>gi|24379029|ref|NP_720984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans UA159]
gi|387786622|ref|YP_006251718.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans LJ23]
gi|449863362|ref|ZP_21778208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U2B]
gi|449870278|ref|ZP_21780568.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 8ID3]
gi|449904587|ref|ZP_21792743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans M230]
gi|449947996|ref|ZP_21807757.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 11SSST2]
gi|449953899|ref|ZP_21809149.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 4VF1]
gi|449984132|ref|ZP_21818849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NFSM2]
gi|450048091|ref|ZP_21839644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N34]
gi|450137347|ref|ZP_21871586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML1]
gi|30316024|sp|Q8DVE3.1|MURD_STRMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|24376923|gb|AAN58290.1|AE014899_9 putative D-glutamic acid adding enzyme MurD;
UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Streptococcus mutans UA159]
gi|379133023|dbj|BAL69775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans LJ23]
gi|449156820|gb|EMB60278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 8ID3]
gi|449168004|gb|EMB70848.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 11SSST2]
gi|449171360|gb|EMB74024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 4VF1]
gi|449180600|gb|EMB82753.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NFSM2]
gi|449197152|gb|EMB98359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans N34]
gi|449235421|gb|EMC34379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans NLML1]
gi|449259116|gb|EMC56660.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans M230]
gi|449265091|gb|EMC62420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans U2B]
Length = 451
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 181/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|449920182|ref|ZP_21798370.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 1SM1]
gi|449158975|gb|EMB62373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 1SM1]
Length = 451
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 181/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|221231502|ref|YP_002510654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae ATCC 700669]
gi|415697588|ref|ZP_11456818.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 459-5]
gi|415749105|ref|ZP_11477049.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SV35]
gi|415751786|ref|ZP_11478897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SV36]
gi|418122962|ref|ZP_12759897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44378]
gi|418127548|ref|ZP_12764444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP170]
gi|418136719|ref|ZP_12773562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11663]
gi|418177719|ref|ZP_12814303.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41565]
gi|419472744|ref|ZP_14012597.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13430]
gi|254766058|sp|B8ZMZ6.1|MURD_STRPJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|220673962|emb|CAR68471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae ATCC 700669]
gi|353798435|gb|EHD78765.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44378]
gi|353800009|gb|EHD80323.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae NP170]
gi|353844493|gb|EHE24536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA41565]
gi|353902647|gb|EHE78175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA11663]
gi|379553646|gb|EHZ18730.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13430]
gi|381309482|gb|EIC50315.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SV36]
gi|381317399|gb|EIC58124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SV35]
gi|381319186|gb|EIC59902.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 459-5]
Length = 450
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 174/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|34540387|ref|NP_904866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
gingivalis W83]
gi|419970300|ref|ZP_14485801.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
gingivalis W50]
gi|62900688|sp|Q7MWM5.1|MURD_PORGI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|34396700|gb|AAQ65765.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
gingivalis W83]
gi|392611113|gb|EIW93864.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
gingivalis W50]
Length = 450
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 184/381 (48%), Gaps = 64/381 (16%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++SE++FA + ++ +TG+NGK+T ++ L G++ + GN+G L+
Sbjct: 93 IVSEIEFAGRYT--DAFMVCITGSNGKTTTTMWLYHTLCKAGLDVGLAGNVGFSLARQVA 150
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ P + V+E+SS+Q++ N Y F V+++LN+TPDHL+R+
Sbjct: 151 Y-----DPHPYY---VIELSSFQLD--NMYDFRANVAILLNITPDHLDRYD--------- 191
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK----IDTEAKTASF 199
H F K+ + NQ + + F W+ P V EA+T +
Sbjct: 192 -HRFELYAEAKMRIT--RNQQPEDCFIYWEDDPFISRWVAEHPPVARLLPFAMEARTDN- 247
Query: 200 EVPAVGVVSQLQLHNMK-----------VMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ ++L + N+ + G HN HNA A++ +DI EA+
Sbjct: 248 TTAWINEKNELVVMNLNSPFVMDEELLALSGMHNRHNAMATAIAAKAMDIK--NEAIREA 305
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS 308
++ + PHR++ + R ++GV +++DSKATN+ +T L +K +IL G Y+
Sbjct: 306 LQDFKNVPHRLEKIAR-VKGVDYINDSKATNVNSTWYALESMKTRVILILGGTDKGNDYT 364
Query: 309 GV----------LIWKTLVNNGL------SIPCFAVA-NMKDAVNHARRMATNGDAIVLS 351
+ LI+ + N L I A A +M +AV+ A +MA+ GD ++LS
Sbjct: 365 DIENLVLSKVDGLIFLGIDNEKLHKFFDGKISRIADACSMHEAVSLAYKMASKGDTVLLS 424
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CASFD F+N+E RG F++
Sbjct: 425 PACASFDLFQNYEDRGDQFRK 445
>gi|325288828|ref|YP_004265009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
glycolicus DSM 8271]
gi|324964229|gb|ADY55008.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
glycolicus DSM 8271]
Length = 454
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 165/352 (46%), Gaps = 38/352 (10%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++ +TG+NGK+T T +G++ G A V GN+G +S L S + V
Sbjct: 109 VVGITGSNGKTTTTTLIGELAKKTGRPAVVAGNIGTAIS---GKVEGLGSRG----IVVA 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E+ ++ ++V++N+TPDHL+RH T++NYA K +F + L +L +
Sbjct: 162 ELSSFQLELIDRLRV-NIAVLINITPDHLDRHGTLENYAAAKARIFENQTGKDLAVLSWD 220
Query: 165 NQHLNEAIKGHRFNLAWIGA----FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ E K + + +I G+ + S + ++++ + +++ G+
Sbjct: 221 YPMVREYGKITQARVTYISTEELLADGIGLSGNDLVWSRDGKTTKIIAR---NELQLRGK 277
Query: 221 HNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNL 280
HN N +GL++G+ + + HR ++V G+ +++DSK TN
Sbjct: 278 HNLENVMCGI--AVGLEMGLSGPQIAEVLRGFAPVAHRQEVVG-SYDGILYINDSKGTNP 334
Query: 281 EATCTGLMDLKGHKCVILLGGQAK------FGYSGVLIWKTLVNNGLSIPCF-------- 326
++ L + V++ GG+ K F K+LV G +
Sbjct: 335 DSAIKALQSYE-EPIVLIAGGKNKGLDMTEFLEEAKKRVKSLVLVGKAADDLEIIAKKIG 393
Query: 327 -----AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ +D V+ A A GD ++LSP C S+D F+++E RG +F+ L
Sbjct: 394 IKNIIKAVDFEDCVDKAIAEAAKGDVVLLSPACTSWDMFKSYEERGELFKTL 445
>gi|334147488|ref|YP_004510417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
gingivalis TDC60]
gi|333804644|dbj|BAK25851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
gingivalis TDC60]
Length = 450
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 184/381 (48%), Gaps = 64/381 (16%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++SE++FA + ++ +TG+NGK+T ++ L G++ + GN+G L+
Sbjct: 93 IVSEIEFAGRYT--DAFMVCITGSNGKTTTTMWLYHTLCKAGLDVGLAGNVGFSLARQVA 150
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ P + V+E+SS+Q++ N Y F V+++LN+TPDHL+R+
Sbjct: 151 Y-----DPHPYY---VIELSSFQLD--NMYDFRANVAILLNITPDHLDRYD--------- 191
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAI---KGHRFNLAWIGAFPGVK----IDTEAKTASF 199
H F K+ + NQ + + F W+ P V EA+T +
Sbjct: 192 -HRFELYAEAKMRIT--RNQQPEDCFIYWEDDPFISRWVAEHPPVARLLPFAMEARTDN- 247
Query: 200 EVPAVGVVSQLQLHNMK-----------VMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ ++L + N+ + G HN HNA A++ +DI EA+
Sbjct: 248 TTAWINEKNELVVMNLNSPFVMDEELLALSGMHNRHNAMATAIAAKAMDIK--NEAIREA 305
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS 308
++ + PHR++ + R ++GV +++DSKATN+ +T L +K +IL G Y+
Sbjct: 306 LQDFKNVPHRLEKIAR-VKGVDYINDSKATNVNSTWYALESMKTRVILILGGTDKGNDYT 364
Query: 309 GV----------LIWKTLVNNGL------SIPCFAVA-NMKDAVNHARRMATNGDAIVLS 351
+ LI+ + N L I A A +M +AV+ A +MA+ GD ++LS
Sbjct: 365 DIENLVLSKVDGLIFLGIDNEKLHKFFDGKISRIADACSMHEAVSLAYKMASKGDTVLLS 424
Query: 352 PGCASFDEFRNFEHRGMVFQE 372
P CASFD F+N+E RG F++
Sbjct: 425 PACASFDLFQNYEDRGDQFRK 445
>gi|450143389|ref|ZP_21873428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 1ID3]
gi|449152348|gb|EMB56058.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 1ID3]
Length = 451
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 181/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|384917152|ref|ZP_10017283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylacidiphilum
fumariolicum SolV]
gi|384525411|emb|CCG93156.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylacidiphilum
fumariolicum SolV]
Length = 438
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 179/387 (46%), Gaps = 62/387 (16%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
++ + LA ++++ + D Q P I I +TG+ GKST + + +L G+EA
Sbjct: 81 IRTSHLAIEPSIKEKIVLQTDLFLQFWP-GITI-GITGSKGKSTTTSLIHHLLKTNGLEA 138
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFC---PTVSVVLNLT 129
++GGN+G P FH I S K +AV+E+SSYQ+E +C P++++ LNL
Sbjct: 139 YIGGNIGVP----PFHLIPFASEK---AIAVLELSSYQLE-----YCRHSPSIAIWLNLY 186
Query: 130 PDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK 189
+HL H + + Y+L K ++ + L N L+E LA I PG
Sbjct: 187 QEHLNYHGSFEAYSLAKSNIARFQSSENFFLYNADNPSLSEF-------LASIDPMPGKL 239
Query: 190 IDTEAK-TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
I + K +F+ S+L L G HN NA AAL+ G+ + + +
Sbjct: 240 IAVDDKWQETFD------CSRLHL-----PGEHNKRNALFAALTASLF--GISAKKIAES 286
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---- 304
PHR++ V I+GV++ +DS AT EAT G+ + + +I LGGQ +
Sbjct: 287 FASFYGLPHRLEYV-ATIEGVSYYNDSIATVPEATLAGIEAIPNVESLI-LGGQDRGLPL 344
Query: 305 FGYSGVLIWKTLVNNGLSIP------------------CFAVANMKDAVNHARRMATNGD 346
G++ L + N + +P F ++++AV A + T G
Sbjct: 345 EGFASKLCQTRNLRNIILLPETGWRIGTFFERKNHKKNIFFAKDLEEAVIIASKFTTKGS 404
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ + SP S+ + NFE RG F+ L
Sbjct: 405 SCLFSPAAPSYHRYLNFEKRGEHFKWL 431
>gi|339493060|ref|YP_004713353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|386019669|ref|YP_005937693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri DSM 4166]
gi|327479641|gb|AEA82951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri DSM 4166]
gi|338800432|gb|AEJ04264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 447
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 162/353 (45%), Gaps = 50/353 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG+M G VGGNLG P AL + + V+
Sbjct: 110 IVAITGSNAKSTVTTLVGEMAAAAGRTVAVGGNLGTP---------ALDLLADEVDLYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+E + V+ LN++ DH++R+ + Y K +F +
Sbjct: 161 ELSSFQLET-TEQLNAEVATCLNISEDHMDRYSGLPAYHQAKHRIFRGARQVVVNR---- 215
Query: 165 NQHLNEAIKGHRFNLAWIG----AFPGVKIDTE--AKTASFEVPAVGVVSQLQLHNMKVM 218
+ L+ + G G F G + E K +F+ A+ + + +K+
Sbjct: 216 DDRLSRPLVGEDVPTWTFGLGKPDFKGFGLFEEKGEKYLAFQFEAL-----MPVRELKMR 270
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN NA A LG +G+ + T+ PHR Q V + GV++ DDSKAT
Sbjct: 271 GAHNQSNALAA--LALGHAVGLPFGPMLDTLRRFTGLPHRCQWVG-ERAGVSYYDDSKAT 327
Query: 279 NLEATCTGL----MDLKGHKCVILLGGQAKFGYSGVL------IWKTLVNNGLSIPCFA- 327
N+ A + D+ G K V++ GG K L + +V G P A
Sbjct: 328 NVGAALAAIEGLGADIDG-KLVLIAGGDGKGADFSALRAPVARYCRAVVLLGRDAPRLAE 386
Query: 328 ----------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
VA++++AV A A +GDA++LSP CAS D F+NFE RG +F
Sbjct: 387 ALGEATVLIRVASLEEAVQRAAECAESGDAVLLSPACASLDMFKNFEERGRLF 439
>gi|398348161|ref|ZP_10532864.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira broomii
str. 5399]
Length = 449
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 172/374 (45%), Gaps = 51/374 (13%)
Query: 28 VMSELDFAAQVIPRSI---KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
V+SE++FA R+ K++ VTGT+GKST + +L+ A GGN+G+ S+
Sbjct: 90 VVSEVEFA-----RAFFFGKLIGVTGTDGKSTTTALICHLLSKDFPGAQAGGNIGHAFSD 144
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
I L +V+E+SSYQ+E + VSV+LNL PDHLERH T+ NY
Sbjct: 145 FCLGPIPL---------SVLELSSYQLE-DSGPLSLDVSVILNLAPDHLERHGTLDNYFA 194
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN-LAWIGAFPGVKIDTEAKTASFEVPA 203
K + N+ L ++ E I+ + N L IG F G + +A+ E
Sbjct: 195 AKARIIDK--NSSKHTLIVSSKLFRERIQ--QMNCLCKIGTF-GREEGNDARILDEERII 249
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
++ N + G HN N + + L+ G + + I PHR Q
Sbjct: 250 QTAKAEYDAKNFPLPGGHNLENLSASILAAEA--AGGNPVNIQQAISGFMGLPHRFQQAG 307
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK---------FGYSGV--- 310
R GVT+++DSK+TNL + G+ K K ++LGG+ K F SG+
Sbjct: 308 R-AAGVTFINDSKSTNLHSMLAGMSTWKEKKTTCLILGGRPKSESFEPLKQFLKSGIGWV 366
Query: 311 -------LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA----IVLSPGCASFDE 359
W ++ + V ++ +A + + +G A +V SP CASFD+
Sbjct: 367 ILFGEARAAWAAEISPLIGDHLVTVEDLGEAFSWLKTAIRSGRARLQSVVFSPACASFDQ 426
Query: 360 FRNFEHRGMVFQEL 373
++NFE RG F L
Sbjct: 427 YKNFEERGEHFLSL 440
>gi|187735162|ref|YP_001877274.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Akkermansia
muciniphila ATCC BAA-835]
gi|187425214|gb|ACD04493.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Akkermansia
muciniphila ATCC BAA-835]
Length = 436
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 162/351 (46%), Gaps = 48/351 (13%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
+I+A+TGTNGK+T + V ++L G A GN G P++E I L S P V
Sbjct: 103 RIIAITGTNGKTTTTSLVEKILLRAGKTAVACGNYGVPVAE-----ILLRDSVP--DVLA 155
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+EVSS+Q+E + F P V+V LN PDH++R+K++++Y K H+F + L ++
Sbjct: 156 LEVSSFQLET-IRDFHPDVAVWLNFAPDHMDRYKSVEDYHRAKLHIFDNQTEKDLAVVRS 214
Query: 164 GNQ--HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV--GVVSQLQLHNMKVMG 219
G + HL ++ L + P + + P + G L L +
Sbjct: 215 GERLPHLKASV------LTFSPEDPAADL-------YYRGPLILEGGAPLLNLEGTTLNQ 261
Query: 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
RHN NA A L+ L G+ E ++ P HR + V R + GV W++DSKATN
Sbjct: 262 RHNAENAMAAVLACRHL--GIPAETAAEVLKEFAPPGHRCETV-RTLDGVLWLNDSKATN 318
Query: 280 LEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNN------------------GL 321
L A L H VIL+ G G V + L
Sbjct: 319 LHALEAALK--SQHSPVILIAGGKDKGLDYVPLRPMLKEKVRACVVFGQIADQLQHAFSP 376
Query: 322 SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
++P A+++ V AR +A GD ++ SPG +SFD F + RG F++
Sbjct: 377 AVPTEKAADVEACVAKARSLARPGDTVLFSPGTSSFDMFTGYVQRGQAFRD 427
>gi|84394436|ref|ZP_00993152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
splendidus 12B01]
gi|84374935|gb|EAP91866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
splendidus 12B01]
Length = 438
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 51/376 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
++Q+G V+ +++ + + ++A+TG+NGKSTV G + G+ VGGN+G
Sbjct: 88 VIQAGTPVVGDIELFGWAVDK--PVVAITGSNGKSTVTDLTGVLAKAAGLNVGVGGNIGI 145
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P + + V+E+SS+Q+E + + LNL+ DH++R++ M
Sbjct: 146 PALDLLELDAD---------LYVLELSSFQLETTSSLNL-AAAAFLNLSEDHMDRYQGMA 195
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG----AFPGVKIDTEAKT 196
+Y K +F+ N + ++ N+ E + L G F ID
Sbjct: 196 DYRDAKLRIFN---NAQYAIV---NREDKETYPDYSMPLVTFGLDDQEFGVATIDGTEWL 249
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRT 254
P L ++ ++GRHN NA V A L +G+D +EAL + +
Sbjct: 250 VDNSKPV------LPTQDLTLVGRHNVANALVSLALLKQVGIDYSKSLEALKAYNGLT-- 301
Query: 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWK 314
HR Q+V D + + WV+DSKATN+ +T L L+ + LL G G +
Sbjct: 302 --HRCQVV-ADKRSIKWVNDSKATNVASTLAALSGLEYQGTLYLLVGGVGKGADFSELEP 358
Query: 315 TLVN-NGLSIPCFA---------------VANMKDAVNHARRMATNGDAIVLSPGCASFD 358
L + + CF M+D + + GD ++LSP CASFD
Sbjct: 359 VLSQLERVQLCCFGEDAAQFMPLHPSAKTFDTMRDIIESVSKQLVAGDMVMLSPACASFD 418
Query: 359 EFRNFEHRGMVFQELA 374
+F NF RG F +LA
Sbjct: 419 QFNNFMARGDAFTDLA 434
>gi|212550833|ref|YP_002309150.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
gi|212549071|dbj|BAG83739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
Length = 452
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 186/370 (50%), Gaps = 44/370 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++SE++FA K + +TG+NGK+T T + +L + G + + GN+G L
Sbjct: 97 IISEIEFAGYYTKA--KTICITGSNGKTTTATLIYYILKYAGFDVALVGNVGKSL----- 149
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146
A+ ++ V+E+SS+Q++ +F ++V+LN+T DHL+ ++ ++NY +K
Sbjct: 150 ---AMQVAEKDCNYYVIELSSFQLD-GMYHFKADIAVLLNITSDHLDCYEYEIQNYINSK 205
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-------GVKIDTEAKTASF 199
+ + + + + + I+ + + + +P GVK TE
Sbjct: 206 MRIIQNQTKNDIFIYWSDDLVIAREIQKMKPTVTF---YPFSEQKQVGVKAYTENGNIKV 262
Query: 200 EVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259
E A G+ S Q + + + G+HN +N+ +AA +V L +GV E L + + HRM
Sbjct: 263 ET-ANGMFSMPQKY-LVLRGKHNLYNS-LAATAVAKL-LGVKDEMLEHSFLNFKAIEHRM 318
Query: 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV--------- 310
+ V I+GV +++DSKATN+ + L ++ +IL G YS +
Sbjct: 319 EKVAH-IKGVDYINDSKATNVNSCFYVLQSMRTPIILILGGVDKGNDYSEIEGLVREKCR 377
Query: 311 -LIWKTLVN-------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
LI+ + N +G + V +MK A+ +A ++A GD ++LSP C+SFD F+N
Sbjct: 378 ALIFLGVDNSKLHDFFDGKVNVIYDVDSMKKAIQYAYKIAQEGDTVLLSPCCSSFDLFQN 437
Query: 363 FEHRGMVFQE 372
+E RG F++
Sbjct: 438 YEDRGKQFKK 447
>gi|449893780|ref|ZP_21788926.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF12]
gi|449255685|gb|EMC53530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF12]
Length = 451
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 181/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVVTEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|194397716|ref|YP_002037343.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae G54]
gi|418120774|ref|ZP_12757720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44194]
gi|419442180|ref|ZP_13982211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13224]
gi|419490626|ref|ZP_14030366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47179]
gi|419531934|ref|ZP_14071452.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47794]
gi|421274608|ref|ZP_15725440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA52612]
gi|226722946|sp|B5E2Z8.1|MURD_STRP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|4009480|gb|AAC95449.1| D-glutamic acid adding enzyme MurD [Streptococcus pneumoniae G54]
gi|194357383|gb|ACF55831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae G54]
gi|353793601|gb|EHD73960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA44194]
gi|379554147|gb|EHZ19227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13224]
gi|379594205|gb|EHZ59015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47179]
gi|379608690|gb|EHZ73435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47794]
gi|395875336|gb|EJG86417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA52612]
Length = 450
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 175/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + + K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIATDK---NTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|116071267|ref|ZP_01468536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. BL107]
gi|116066672|gb|EAU72429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
sp. BL107]
Length = 462
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 175/391 (44%), Gaps = 57/391 (14%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G +V E++ A + I + +TGTNGK+TV + +L G+ A +GGN
Sbjct: 86 LEILRQEGVQVRGEIELAWDAL-NDIPWVGITGTNGKTTVTHLLSHVLEQAGLRAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +E A +P + V+E+SSYQ+E P++ + LTPDHLERH
Sbjct: 145 MGVSAAEMALKIKTGDLLRPDW--LVMELSSYQIEA-GPTLAPSIGIWTTLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT----- 192
T++ Y K L + L + + LN HR +L G+ + T
Sbjct: 202 TLEAYRAIKRGLLQR---SSLAIFNGDDADLN----AHRSSLK-----SGIWVQTATPCP 249
Query: 193 EAKTASFEVPAVGVVSQLQLHNM------KVMGRHNYHNAAVAALSVLGLDIGVDVEALN 246
+ + A F + G + + M + G HN N + ++ + IG++ E +
Sbjct: 250 DDQPADFWIDDAGTIQARESGAMFPADALAMPGAHNRQNQLL--VTAAAIQIGLNAEQIA 307
Query: 247 STIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG 306
PHR++ + + +DSKATN +A GL + G V+L GGQ K G
Sbjct: 308 QGFRSFPGVPHRLERLGSTASADVF-NDSKATNYDAAAVGLQAMAG-TVVVLAGGQTKRG 365
Query: 307 YSGVLIWKT-LVNNGLSIPCFAVA---------------------NMKDAVNHARRMAT- 343
+ W T L + ++ F ++K AV A + +
Sbjct: 366 DA--TGWLTELKSKACAVVLFGAGAEELDALIRQSDYQGQVHRCNDLKAAVAIAVQATSE 423
Query: 344 -NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+++LSP CASFD++++FE RG F++L
Sbjct: 424 LQATSLLLSPACASFDQYQDFEARGDHFRDL 454
>gi|385260126|ref|ZP_10038275.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. SK140]
gi|385192046|gb|EIF39456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. SK140]
Length = 450
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 171/371 (46%), Gaps = 44/371 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A V I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLV--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N + K+D E
Sbjct: 203 YVEAKWNIQSNMTAADYLVLNF-NQELAKEL-ATKTNATVVPFSTLEKVDGAYLEDGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GVD E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNETIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
+Q V + I+GV + +DSK+TN+ AT L K +++ GG +
Sbjct: 314 LQFVDQ-IKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFEELVPDITGL 372
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G S + + G + ++ DA A +A GD ++LSP AS+D
Sbjct: 373 KKMVILGQSAERVKRAADKAG--VAYVDATDIADATRKAYELAEEGDVVLLSPANASWDM 430
Query: 360 FRNFEHRGMVF 370
+ NFE RG +F
Sbjct: 431 YANFEVRGDLF 441
>gi|319953738|ref|YP_004165005.1| UDP-n-acetylmuramoylalanine--d-glutamate ligase [Cellulophaga
algicola DSM 14237]
gi|319422398|gb|ADV49507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
algicola DSM 14237]
Length = 444
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/365 (25%), Positives = 176/365 (48%), Gaps = 36/365 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA++ KI+ +TG+NGK+T V +L G+ + GN+G+ ++
Sbjct: 89 VISEIEFASKYT--DAKIIGITGSNGKTTTTMLVNHILKSEGLHVGMAGNIGDSYAKMV- 145
Query: 88 HCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145
++ F+ V+E+SS+Q++ I + F P ++++ N++PDHL+R+ +NY +
Sbjct: 146 -------AENDFEYYVLEISSFQLDGIVD--FKPHIAILTNISPDHLDRYDYKYENYIAS 196
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K + + + ++ L + +K H + I+ A + + ++
Sbjct: 197 KFRIAENQTEDDYFIYDADDKDLTDWLKKHPVKAKLMPYSIERTIEEGAFSTNKDITITT 256
Query: 206 VVSQLQL--HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
L++ ++ + G+HN N A S IG+ E + +++ + HR++ V
Sbjct: 257 NNDTLKMKTDSLSLEGKHNLKNTMAA--STASKLIGIRKETIRNSVANFQGAEHRLEKVL 314
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW-----KTLV- 317
+ I V +++DSKATN+ AT L ++ I+ G Y ++ K ++
Sbjct: 315 K-IHHVEYINDSKATNVNATYYALDSVRTPTVWIVGGVDKGNDYKSLMPLVREKVKAIIC 373
Query: 318 ---NNGLSIPCFA--------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
+N I F +M + V A +MA GD ++LSP CASFD F N+E R
Sbjct: 374 LGKDNTKIIEAFGNVVDLIVEAYDMSETVKIAYKMAERGDTVLLSPACASFDLFDNYEDR 433
Query: 367 GMVFQ 371
G F+
Sbjct: 434 GNQFK 438
>gi|15900589|ref|NP_345193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae TIGR4]
gi|111658685|ref|ZP_01409328.1| hypothetical protein SpneT_02000191 [Streptococcus pneumoniae
TIGR4]
gi|418129856|ref|ZP_12766740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07643]
gi|418186697|ref|ZP_12823227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47360]
gi|418229426|ref|ZP_12856035.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP01]
gi|419477355|ref|ZP_14017180.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA18068]
gi|421210651|ref|ZP_15667640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070035]
gi|421242682|ref|ZP_15699204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2081074]
gi|421246941|ref|ZP_15703429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2082170]
gi|421270111|ref|ZP_15720968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR48]
gi|30316108|sp|Q97RU8.1|MURD_STRPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|14972164|gb|AAK74833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae TIGR4]
gi|353803148|gb|EHD83440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA07643]
gi|353853283|gb|EHE33266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47360]
gi|353890565|gb|EHE70328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae EU-NP01]
gi|379566737|gb|EHZ31724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA18068]
gi|395575021|gb|EJG35593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2070035]
gi|395610002|gb|EJG70083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2081074]
gi|395615097|gb|EJG75114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2082170]
gi|395870763|gb|EJG81876.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR48]
Length = 450
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 174/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|329770442|ref|ZP_08261824.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
M325]
gi|328836565|gb|EGF86225.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
M325]
Length = 446
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 180/366 (49%), Gaps = 48/366 (13%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+++E++ A + ++ ++A+TGTNGK+T +L + ++ GN+G P E A+
Sbjct: 95 IITEIELANTLF--NVDMVAITGTNGKTTTTQMTYDILKQSNKDVYLAGNIGYPSIEVAY 152
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ P+S + + EVSS+Q+E KYF P+++ + NL HL+ HK+++NY K
Sbjct: 153 NH---PNS-----LIITEVSSFQLE-GTKYFRPSIAAITNLGEGHLDYHKSIENYRNAKR 203
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA---FPGVKIDTEAKTASFEVPAV 204
++ + V+T +L + ++N++ I + F K +T+A + +
Sbjct: 204 KIYKNQVDTDFLILNIKEKD--------KYNISEINSNIIFYDTKFNTDADVYIKDNMVI 255
Query: 205 -GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
G V + + G HN N AA V+ G D+E++ + HR+Q V
Sbjct: 256 YGDVELFDSTKLTLPGLHNVENGINAA--VIAYKKGADIESIRKVLYNFSGVKHRLQYVG 313
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------------- 304
+ +G+ + +DSKATN AT L + + V++ GGQ +
Sbjct: 314 EN-KGIKYYNDSKATNPVATINALSGFEKN-VVLICGGQDRGIDFHELSPYLNRVKTMVV 371
Query: 305 FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
G S I K+L + ++ C + DA A ++A GD I+LSP CAS+D++++FE
Sbjct: 372 VGESAD-ILKSLADKN-NVNCIKAIKIDDATEKASKLAVTGDIILLSPACASWDQYKSFE 429
Query: 365 HRGMVF 370
RG F
Sbjct: 430 VRGDEF 435
>gi|149377264|ref|ZP_01895011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
algicola DG893]
gi|149358452|gb|EDM46927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
algicola DG893]
Length = 446
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 160/356 (44%), Gaps = 53/356 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGK+TV T VG+M G VGGN+G P AL + V+
Sbjct: 111 IIAITGSNGKTTVTTLVGEMARAAGRRVEVGGNIGTP---------ALDLLGRGADLYVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL---- 160
E+SS+Q+E + + VLN++ DH++R+ Y K +F+ N + L
Sbjct: 162 ELSSFQLET-TRELNALAATVLNVSDDHMDRYPDKMAYFQAKQRIFNGCQNAVVNLDDAL 220
Query: 161 -LPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
P +L G +R N + D E +F G + L + +M
Sbjct: 221 STPMARDNLRFLCFGFYRVNPDTF----STRDDDEGTWITF-----GFDNLLLAEELGLM 271
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G+HN N A + +DV + T++ + PHR + V R + V +++DSK T
Sbjct: 272 GQHNISNVMAALALGHAAGLPMDV--MLDTVKRFKGLPHRCEFVRR-VSDVDYINDSKGT 328
Query: 279 NLEATCTGLMDL--KGHKCVILLGGQAK--------------------FGYSGVLIWKTL 316
N+ AT + L G K V++ GG+ K G I L
Sbjct: 329 NVGATTAAIESLVPTGGKIVLIAGGEGKGADFSLLAEPVAAHCRAVVLIGADAGTIATAL 388
Query: 317 VNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
N + A++ AV+ A+++A GD ++LSP CASFD FR++ RG F++
Sbjct: 389 GNR---VETVNAADIAGAVHTAKKLAQPGDRVLLSPACASFDMFRDYGDRGDRFRQ 441
>gi|418193336|ref|ZP_12829829.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47439]
gi|353860059|gb|EHE40006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47439]
Length = 450
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 174/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVIPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|148989060|ref|ZP_01820460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP6-BS73]
gi|147925557|gb|EDK76634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP6-BS73]
Length = 434
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 174/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 77 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 134
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 135 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 186
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 187 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 243
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 244 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 300
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 301 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 359
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 360 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 419
Query: 365 HRGMVF 370
RG +F
Sbjct: 420 VRGDLF 425
>gi|238752430|ref|ZP_04613907.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia rohdei
ATCC 43380]
gi|238709363|gb|EEQ01604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia rohdei
ATCC 43380]
Length = 442
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 166/350 (47%), Gaps = 42/350 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV T VG+M G + VGGN+G P AL + + Q+ V+
Sbjct: 111 LVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVP---------ALSLLQQENQLVVL 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + + +LN+T DH +R+ ++ Y K ++ N K+ ++
Sbjct: 162 ELSSFQLETTSSLRA-SAATILNVTEDHTDRYPFGLQQYRAAKLRVYE---NAKVCVVN- 216
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L I+G G G ++ + V V L MK+ GRHN
Sbjct: 217 ADDALTMPIRGADSRCISFGVDVGDYHLNKQQGEIWLRVRGEKV---LNTREMKLTGRHN 273
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
Y NA A +G+ + + + PHR Q+V GV W++DSKATN+ +
Sbjct: 274 YTNALAALALA--DAVGIPRSSSLTALTTFTGLPHRFQLVFEH-NGVRWINDSKATNVGS 330
Query: 283 TCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA------------V 328
T L L+ + +LLGG K +SG + + L + + I CF V
Sbjct: 331 TEAALDGLQVDGTLHLLLGGDGKSADFSG--LTRFLQGDHIKIYCFGRDGEQLAQLRPEV 388
Query: 329 ANMKDAVNHA----RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+ + + + A + D ++LSP CAS D+FR+FE RG F LA
Sbjct: 389 SQLTETMEQAMVLLAKTVIPRDMVLLSPACASLDQFRSFEQRGDEFARLA 438
>gi|22127502|ref|NP_670925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis KIM10+]
gi|45443363|ref|NP_994902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis biovar Microtus str. 91001]
gi|108809539|ref|YP_653455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis Antiqua]
gi|108810584|ref|YP_646351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis Nepal516]
gi|145600344|ref|YP_001164420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis Pestoides F]
gi|150260412|ref|ZP_01917140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
CA88-4125]
gi|162420170|ref|YP_001607297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis Angola]
gi|165928206|ref|ZP_02224038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165937844|ref|ZP_02226405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Orientalis str. IP275]
gi|166009082|ref|ZP_02229980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166212214|ref|ZP_02238249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167401289|ref|ZP_02306789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167421918|ref|ZP_02313671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167426438|ref|ZP_02318191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167469522|ref|ZP_02334226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
FV-1]
gi|218927749|ref|YP_002345624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis CO92]
gi|229837056|ref|ZP_04457221.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
Pestoides A]
gi|229840441|ref|ZP_04460600.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229843017|ref|ZP_04463167.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
biovar Orientalis str. India 195]
gi|229900776|ref|ZP_04515900.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
Nepal516]
gi|270487854|ref|ZP_06204928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
KIM D27]
gi|294502641|ref|YP_003566703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis Z176003]
gi|384121075|ref|YP_005503695.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis D106004]
gi|384124954|ref|YP_005507568.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis D182038]
gi|384137460|ref|YP_005520162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis A1122]
gi|384416415|ref|YP_005625777.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
biovar Medievalis str. Harbin 35]
gi|420545023|ref|ZP_15043196.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-01]
gi|420550353|ref|ZP_15047959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-02]
gi|420555803|ref|ZP_15052809.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-03]
gi|420561482|ref|ZP_15057759.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-04]
gi|420566487|ref|ZP_15062274.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-05]
gi|420572161|ref|ZP_15067429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-06]
gi|420577426|ref|ZP_15072182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-07]
gi|420582832|ref|ZP_15077114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-08]
gi|420587939|ref|ZP_15081719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-09]
gi|420593256|ref|ZP_15086508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-10]
gi|420598934|ref|ZP_15091592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-11]
gi|420604511|ref|ZP_15096567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-12]
gi|420609794|ref|ZP_15101363.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-13]
gi|420615059|ref|ZP_15106046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-14]
gi|420620521|ref|ZP_15110816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-15]
gi|420625540|ref|ZP_15115366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-16]
gi|420630706|ref|ZP_15120057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-19]
gi|420635892|ref|ZP_15124690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-25]
gi|420641486|ref|ZP_15129737.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-29]
gi|420646561|ref|ZP_15134390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-32]
gi|420652242|ref|ZP_15139485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-34]
gi|420657698|ref|ZP_15144406.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-36]
gi|420663033|ref|ZP_15149167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-42]
gi|420668046|ref|ZP_15153701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-45]
gi|420673322|ref|ZP_15158502.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-46]
gi|420678825|ref|ZP_15163509.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-47]
gi|420684060|ref|ZP_15168213.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-48]
gi|420689234|ref|ZP_15172806.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-52]
gi|420695064|ref|ZP_15177903.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-53]
gi|420700333|ref|ZP_15182490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-54]
gi|420706471|ref|ZP_15187377.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-55]
gi|420711758|ref|ZP_15192168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-56]
gi|420717126|ref|ZP_15196917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-58]
gi|420722769|ref|ZP_15201730.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-59]
gi|420728392|ref|ZP_15206731.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-60]
gi|420733520|ref|ZP_15211351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-61]
gi|420738962|ref|ZP_15216265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-63]
gi|420744192|ref|ZP_15220927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-64]
gi|420750112|ref|ZP_15225926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-65]
gi|420755195|ref|ZP_15230440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-66]
gi|420761251|ref|ZP_15235282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-71]
gi|420766421|ref|ZP_15239961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-72]
gi|420771463|ref|ZP_15244473.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-76]
gi|420776782|ref|ZP_15249268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-88]
gi|420782282|ref|ZP_15254090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-89]
gi|420787712|ref|ZP_15258855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-90]
gi|420793177|ref|ZP_15263781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-91]
gi|420798329|ref|ZP_15268407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-92]
gi|420803712|ref|ZP_15273253.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-93]
gi|420808896|ref|ZP_15277947.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-94]
gi|420814690|ref|ZP_15283136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-95]
gi|420819829|ref|ZP_15287795.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-96]
gi|420824908|ref|ZP_15292336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-98]
gi|420830690|ref|ZP_15297554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-99]
gi|420835505|ref|ZP_15301895.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-100]
gi|420840667|ref|ZP_15306576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-101]
gi|420846258|ref|ZP_15311635.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-102]
gi|420851599|ref|ZP_15316389.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-103]
gi|420857177|ref|ZP_15321093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-113]
gi|421761980|ref|ZP_16198780.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis INS]
gi|30316092|sp|Q8ZIF1.1|MURD_YERPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|118595705|sp|Q1C212.1|MURD_YERPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|118595706|sp|Q1CMM9.1|MURD_YERPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|21960600|gb|AAM87176.1|AE013965_3 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia pestis
KIM10+]
gi|45438232|gb|AAS63779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Microtus str. 91001]
gi|108774232|gb|ABG16751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
Nepal516]
gi|108781452|gb|ABG15510.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
Antiqua]
gi|115346360|emb|CAL19232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
CO92]
gi|145212040|gb|ABP41447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
Pestoides F]
gi|149289820|gb|EDM39897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
CA88-4125]
gi|162352985|gb|ABX86933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
Angola]
gi|165914256|gb|EDR32872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Orientalis str. IP275]
gi|165919817|gb|EDR37118.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165992421|gb|EDR44722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166206960|gb|EDR51440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166960055|gb|EDR56076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167049314|gb|EDR60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167054536|gb|EDR64344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|229682115|gb|EEO78207.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
Nepal516]
gi|229689893|gb|EEO81952.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
biovar Orientalis str. India 195]
gi|229696807|gb|EEO86854.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229705999|gb|EEO92008.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
Pestoides A]
gi|262360671|gb|ACY57392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis D106004]
gi|262364618|gb|ACY61175.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis D182038]
gi|270336358|gb|EFA47135.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
KIM D27]
gi|294353100|gb|ADE63441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis Z176003]
gi|320016919|gb|ADW00491.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
biovar Medievalis str. Harbin 35]
gi|342852589|gb|AEL71142.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis A1122]
gi|391432069|gb|EIQ93547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-01]
gi|391433103|gb|EIQ94475.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-02]
gi|391435748|gb|EIQ96776.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-03]
gi|391448048|gb|EIR07898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-04]
gi|391448879|gb|EIR08652.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-05]
gi|391451512|gb|EIR11001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-06]
gi|391464181|gb|EIR22497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-07]
gi|391465753|gb|EIR23913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-08]
gi|391467841|gb|EIR25781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-09]
gi|391481253|gb|EIR37810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-10]
gi|391482052|gb|EIR38533.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-12]
gi|391482156|gb|EIR38620.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-11]
gi|391496418|gb|EIR51370.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-13]
gi|391496942|gb|EIR51846.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-15]
gi|391500572|gb|EIR55063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-14]
gi|391512075|gb|EIR65422.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-16]
gi|391513793|gb|EIR66973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-19]
gi|391515759|gb|EIR68717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-25]
gi|391527568|gb|EIR79474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-29]
gi|391530351|gb|EIR81935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-34]
gi|391531776|gb|EIR83239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-32]
gi|391544666|gb|EIR94854.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-36]
gi|391546267|gb|EIR96276.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-42]
gi|391547031|gb|EIR96966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-45]
gi|391560872|gb|EIS09462.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-46]
gi|391562010|gb|EIS10472.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-47]
gi|391564051|gb|EIS12298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-48]
gi|391576186|gb|EIS22782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-52]
gi|391576878|gb|EIS23373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-53]
gi|391588401|gb|EIS33436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-55]
gi|391590970|gb|EIS35610.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-54]
gi|391592187|gb|EIS36654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-56]
gi|391605374|gb|EIS48268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-60]
gi|391606797|gb|EIS49485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-58]
gi|391607645|gb|EIS50224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-59]
gi|391619664|gb|EIS60907.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-61]
gi|391620564|gb|EIS61702.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-63]
gi|391628774|gb|EIS68790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-64]
gi|391631197|gb|EIS70858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-65]
gi|391642551|gb|EIS80812.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-71]
gi|391645294|gb|EIS83187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-72]
gi|391647530|gb|EIS85151.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-66]
gi|391654986|gb|EIS91772.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-76]
gi|391661777|gb|EIS97788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-88]
gi|391666668|gb|EIT02098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-89]
gi|391668456|gb|EIT03688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-90]
gi|391672663|gb|EIT07453.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-91]
gi|391686077|gb|EIT19542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-93]
gi|391687607|gb|EIT20899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-92]
gi|391688839|gb|EIT22026.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-94]
gi|391700222|gb|EIT32337.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-95]
gi|391703551|gb|EIT35292.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-96]
gi|391704315|gb|EIT35983.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-98]
gi|391714504|gb|EIT45149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-99]
gi|391719923|gb|EIT49988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-100]
gi|391720435|gb|EIT50457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-101]
gi|391731116|gb|EIT59858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-102]
gi|391733540|gb|EIT61906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-103]
gi|391737129|gb|EIT65045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
PY-113]
gi|411178302|gb|EKS48314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
pestis INS]
Length = 438
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 163/350 (46%), Gaps = 42/350 (12%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV T VG+M G GGN+G P AL K Q+ V+
Sbjct: 107 VVAITGSNGKSTVTTLVGEMAKAAGWSVGGGGNIGVP---------ALTLLKQDNQLTVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E + + + +LN+T DH +R+ ++ Y K ++ N K+ ++
Sbjct: 158 ELSSFQLETTHSLRA-SAATILNVTEDHTDRYPLGLQQYRAAKLRVYE---NAKVCVVN- 212
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ L ++G G G ++ + V V L MK+ GRHN
Sbjct: 213 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWLRVRGEKV---LNTREMKLSGRHN 269
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
Y NA A +G+ + + PHR Q+V + GV W++DSKATN+ +
Sbjct: 270 YTNALAALALA--DAVGIPRASSLKALTTFSGLPHRFQLV-LERHGVRWINDSKATNVGS 326
Query: 283 TCTGLMDLKGHKCV-ILLGGQAKFG-YSGVLIWKTLVNNGLSIPCFA------------- 327
T L L+ + +LLGG K +SG+ + L + + + CF
Sbjct: 327 TEAALDGLQVDGTLHLLLGGDGKSADFSGLTHF--LQGDRIKVYCFGRDGGQLAALRPDV 384
Query: 328 ---VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M A+ ++ GD ++LSP CAS D+FR+FEHRG F LA
Sbjct: 385 SQLTETMAQAMALVAKVVLPGDRVLLSPACASLDQFRSFEHRGNEFARLA 434
>gi|126663232|ref|ZP_01734230.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Flavobacteria bacterium BAL38]
gi|126624890|gb|EAZ95580.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
[Flavobacteria bacterium BAL38]
Length = 444
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 191/398 (47%), Gaps = 63/398 (15%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + LL+ V+SE++FA Q K + +TG+NGK+T +L G+
Sbjct: 74 KAPIVKKLLEKDIPVISEIEFAIQFT--QAKTVGITGSNGKTTTTLLTYHVLKEAGLNVG 131
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+ GN+G A ++ K + V+E+SS+Q++ Y P ++++ N++PDHL
Sbjct: 132 LAGNIG--------KSFAWQVAENKHDIYVLELSSFQLDGVFNY-KPNIAIITNISPDHL 182
Query: 134 ERHKTMKNYALTKCHLFSHMVN-TKLGLLPFGNQH-------LNEAIKGHR--FNL---- 179
+R+ +Y+L F N T+ L + N+ N IK ++ F+L
Sbjct: 183 DRYNY--DYSLYINSKFRITKNQTEADYLIYDNEDEAIKNWLKNNTIKANKVPFSLTTKP 240
Query: 180 -AWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
A G +++ +F +P +++L L G+HN NA +AA +V L +
Sbjct: 241 EAEGGFLDENNMNSTINNDTFTMP----INELALE-----GKHNIKNA-MAATAVAQL-L 289
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
+ + + ++ + HR++ V + IQGV +++DSKATN+ + L D V +
Sbjct: 290 NIRKQTIRESLTNFQGAEHRLEKVLK-IQGVQYINDSKATNVNSVFYAL-DSMTTPTVWI 347
Query: 299 LGGQAKFGYSGVLIWKTLVNNGL-SIPCFAVAN-------------------MKDAVNHA 338
+GG K L+ LV + +I C V N M +AV A
Sbjct: 348 VGGVDKGNDYDELM--PLVREKVKAIVCLGVDNTKISNTFNNVVDIMVETTSMAEAVQIA 405
Query: 339 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
+R+A GD+++LSP CASFD F N+E RG F++ ++
Sbjct: 406 QRLAEKGDSVLLSPACASFDLFENYEDRGKQFKQAIYN 443
>gi|390453133|ref|ZP_10238661.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
peoriae KCTC 3763]
Length = 473
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 180/403 (44%), Gaps = 75/403 (18%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++ G V++E++ A + I+ +TG+NGK+T T+VG++L G+ V GN+G P
Sbjct: 93 VELGIEVVTEVEVAYHLC--KAPIIGITGSNGKTTTTTWVGKLLESSGMNPIVAGNIGTP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L EAA + VVE+SS+Q++ K F P V+ +LN+ HL+ H M++
Sbjct: 151 LCEAAVDA-------KTDEWMVVELSSFQLK-GTKDFKPAVACLLNVAETHLDYHGGMED 202
Query: 142 YALTKCHLFSHMVNT-------------------KLGLLPFG-NQHLNEAIKGHRFNLAW 181
Y +K LF++ +T K LLPF + L E + A
Sbjct: 203 YVASKARLFANQTSTDTAVVNWDDPVCRELVPYIKAKLLPFSMTERLQEGL------FAD 256
Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
P V D E + ++GVV + + + + GR N NA A + G
Sbjct: 257 PPYIPDVTDDIERSIVYRD--SLGVVHPIIGVAEIGLPGRFNVENALAACAIAIAA--GA 312
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH------- 293
+ L + R HR++ V + G + ++SKATN +AT L K
Sbjct: 313 EPAKLAEPLSAFRGVEHRLEYV-IEHAGAAYYNNSKATNSKATMMALSSFKQPIVLIAGG 371
Query: 294 ------------------KCVILLGGQ----AKFGYSGVLIWKTLVNNGLSIPCFAVANM 331
K V+LLG A + + +V+NG A A +
Sbjct: 372 LDRGSDYTELVPSLQEHVKAVVLLGETRHKLADRAHQAGIEHVEVVDNGED----AAATL 427
Query: 332 KDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+AVN A A GD ++LSP CAS+D FR++E RG +F+E A
Sbjct: 428 VEAVNKAAEFAEPGDVVLLSPACASWDMFRSYEERGRIFKEAA 470
>gi|395803399|ref|ZP_10482646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium sp.
F52]
gi|395434445|gb|EJG00392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium sp.
F52]
Length = 443
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 184/374 (49%), Gaps = 38/374 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKI-LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
L+ +G +V+SE++FA IP + + + +TG+NGK+T +L + G+ +GGN+G
Sbjct: 81 LVAAGVKVISEIEFA---IPYTEAMTIGITGSNGKTTTTMLTHHLLKYAGLNVGLGGNIG 137
Query: 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHK- 137
A ++ K+ V+E+SS+Q++ I N + P ++++ N++PDHL+R++
Sbjct: 138 --------KSFAWQVAENKYDAYVLELSSFQLDGIIN--YRPDIAIITNISPDHLDRYEY 187
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA--K 195
+NY +K + + + ++ E +K ++ I K D A
Sbjct: 188 KYENYINSKFRITMNQTENDYLIYDADDEASTEWLKKNKTKAKLIPFSLTKKFDEGASIN 247
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
E+ + ++ + G+HN NA +AA SV L + + + ++ +
Sbjct: 248 NNKMEIKINQEEFTMDTEHIALEGKHNMKNA-MAASSVAKL-MQIRNATIRESLSNFQGV 305
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV--LIW 313
HR++ V + IQ V +++DSKATN+ AT L + I+ G Y+ + L+
Sbjct: 306 EHRLEKVLK-IQNVQYINDSKATNVNATFFALDSMNAPTVWIVGGVDKGNDYNELMSLVR 364
Query: 314 KTL-------VNNGLSIPCFA--------VANMKDAVNHARRMATNGDAIVLSPGCASFD 358
+ + ++N I F V NM DAV A+R+ GD ++LSP CASFD
Sbjct: 365 EKVKAIICLGIDNRKIIDAFGNVVDIMVEVNNMNDAVKTAQRLTEKGDVVLLSPACASFD 424
Query: 359 EFRNFEHRGMVFQE 372
F N+E RG F++
Sbjct: 425 LFENYEDRGKQFKQ 438
>gi|256372027|ref|YP_003109851.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008611|gb|ACU54178.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
ferrooxidans DSM 10331]
Length = 437
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 163/350 (46%), Gaps = 52/350 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I AVTGTNGKSTV T ML G A GNLG PLS A S + VV
Sbjct: 107 ITAVTGTNGKSTVTTLTASML---GDGAVAAGNLGTPLSAVA------DSGARRL---VV 154
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
EVSS+Q+ + F +V+ VLNLTP+HL+ H + + Y K L + + + P G
Sbjct: 155 EVSSFQL-VWAPTFRASVATVLNLTPNHLDYHGSFEAYRAAKARLIERLAPGDVAVWPVG 213
Query: 165 NQHLNEAIKGHRFNLAWIGAFP-GVKIDT---EAKTASFEVPAVGVVSQ--LQLHNMKVM 218
++ AI A P GV++ T A+ A + V +V L ++ +
Sbjct: 214 EGAVD-AI-----------AIPRGVEVRTFSATARDADYRVEHGALVGPDGRTLVRVEEL 261
Query: 219 GRHNYHNAA-VAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
GR H+ A + A L G ++E R HR+Q+V G+T+VDDSKA
Sbjct: 262 GRRAPHDVANMLAAWALAEASGAELERARRVAREFRGLAHRLQVVAVR-GGLTYVDDSKA 320
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAK-FGY----------SGVLIW-----KTLVNNGL 321
T EA + + V++ GG+ K G+ +GV+ + + + G
Sbjct: 321 TTPEAAVAAVRSF--DRVVLIAGGRTKGTGFERLRDVAERIAGVVAIGESAHRVVADLGD 378
Query: 322 SIPCFAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
++P AN M +AV A A G ++L+P S+D +R+FE RG F
Sbjct: 379 AVPWIVEANSMDEAVAVASERALPGTVVLLAPAATSWDWYRSFEERGEDF 428
>gi|398343119|ref|ZP_10527822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira inadai
serovar Lyme str. 10]
Length = 449
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 167/371 (45%), Gaps = 45/371 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA K++ VTGT+GKST +L+ A GGN+G S+
Sbjct: 90 VVSEVEFARAFF--FGKLIGVTGTDGKSTTTALTCHLLSKDFPGAQAGGNIGRAFSDFCL 147
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ L AV+E+SSYQ+E + VSV+LNL PDHLERH T+ NY K
Sbjct: 148 GPVPL---------AVLELSSYQLE-DSGPLSLDVSVILNLAPDHLERHGTLDNYFAAKA 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFN-LAWIGAFPGVKIDTEAKTASFEVPAVGV 206
+ N+ L ++ E I+ + N L IG F G + +A+ E
Sbjct: 198 RIIDK--NSSKHTLVVSSKLFRERIQ--QMNCLCKIGTF-GREEGNDARILDEERIIQTA 252
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
++ + G HN N + + L+ +G + + I PHR Q R
Sbjct: 253 KAEYDAKAFLLPGGHNLENLSASILAAEA--VGGNPANIQQAISGFTGLPHRFQQAGR-A 309
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK---------FGYSGV------ 310
GVT+++DSK+TNL + G+ K K ++LGG+ K F SG+
Sbjct: 310 AGVTFINDSKSTNLHSMLAGMSTWKEKKSTCLILGGRPKSESFEPLKQFLKSGIGWVILF 369
Query: 311 ----LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA----IVLSPGCASFDEFRN 362
W ++ L + N+ +A + +G A +V SP CASFD+++N
Sbjct: 370 GEARAAWAAEISPILGVHFVTAENLDEAFFWLKTAIRSGRARLKSVVFSPACASFDQYKN 429
Query: 363 FEHRGMVFQEL 373
FE RG F L
Sbjct: 430 FEERGEHFLNL 440
>gi|333371327|ref|ZP_08463281.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase, partial
[Desmospora sp. 8437]
gi|332976299|gb|EGK13157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Desmospora sp.
8437]
Length = 386
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 176/371 (47%), Gaps = 40/371 (10%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G V++E++ A Q+ S+ + +TG+NGK+T + VG+ML GI A V GN+G LSE
Sbjct: 28 GIPVVTEVEIAWQLTEASM--IGITGSNGKTTTTSLVGRMLARGGIPARVAGNIGMALSE 85
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A + + + E+SS+Q++ + F P + +LNL P HL+ H +M++Y
Sbjct: 86 VA-------PGMDQEEWLISELSSFQLK-GTRQFRPRIGALLNLVPAHLDYHGSMEDYLE 137
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA--SFEVP 202
+K LF++ + +L + R ++ W V K + +P
Sbjct: 138 SKGKLFANQQPGDIAVLNRDSDVCRRLAPQLRGDVWWFSRQEPVDRGLMVKQGWVTARLP 197
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+S L +++ G H + A +A+++ G +AL + HR++ V
Sbjct: 198 DGEELSLLPASQVRLPGIHMENALAASAIALA---AGCPADALREELRTFTGVEHRLEFV 254
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------------ 304
+ GV + +DSKATN +A T M+ V++ GG +
Sbjct: 255 A-TVDGVRYYNDSKATNGKA-ATSAMESFTEPIVLIAGGLDRGVDFRELVPVFQKRLKGI 312
Query: 305 --FGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
+G +G ++ K S+P A + DAV A R+A GD ++LSP CAS+D +
Sbjct: 313 VTYGEAGDVLLKRAEEA--SVPLRERAEEIADAVTRASRLAAAGDVVLLSPACASWDLYT 370
Query: 362 NFEHRGMVFQE 372
+FE RG +F++
Sbjct: 371 SFEERGSIFKQ 381
>gi|385263157|ref|ZP_10041249.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. SK643]
gi|385188471|gb|EIF35956.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
sp. SK643]
Length = 450
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 174/371 (46%), Gaps = 44/371 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H T +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQDFHPEIAVITNLMPTHIDYHGTFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFE 200
Y K ++ +M T +L F NQ L + + A + F + K+D A E
Sbjct: 203 YVDAKWNIQKNMTATDFLVLNF-NQDLAKELATK--TEAEVVPFSTLEKVD----GAYLE 255
Query: 201 VPAVGVVSQLQL--HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ +L + + V G HN N A+A + V L GVD + + T+ HR
Sbjct: 256 DGQLYFRGELVMAADEIGVPGSHNVEN-ALATIVVSKLR-GVDNQTIKETLAAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
+Q V +I+GV + +DSK+TN+ AT L K +++ GG +
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVQDITGL 372
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G S + + G+S ++ DA A +AT GD ++LSP AS+D
Sbjct: 373 KKMVILGQSAERVKRAADKAGVS--YLDALDIADATRKAYELATEGDVVLLSPANASWDM 430
Query: 360 FRNFEHRGMVF 370
+ NFE RG +F
Sbjct: 431 YANFEVRGDLF 441
>gi|283798343|ref|ZP_06347496.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
M62/1]
gi|291073926|gb|EFE11290.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
M62/1]
gi|295092803|emb|CBK78910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium cf.
saccharolyticum K10]
Length = 448
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 103/383 (26%), Positives = 180/383 (46%), Gaps = 40/383 (10%)
Query: 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
L+A ++ + Q+G + SE+ A ++ A+TGTNGK+T G+++
Sbjct: 78 LEAPFVSVIDQAGIPIWSEIQLAYHCAKG--RLAAITGTNGKTTTTALTGEIMKACYDSV 135
Query: 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
FV GN+G+P + A + V V EVSS+Q+E F P VS +LN+TPDH
Sbjct: 136 FVVGNIGDPYTAHALETT-------EKSVTVAEVSSFQLETIMD-FRPNVSAILNITPDH 187
Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK--- 189
L+RHKTM+ Y K + + + +L + + L E + + + + + +K
Sbjct: 188 LDRHKTMERYIEIKEGITKNQKENDVCVLNYDDPVLREFGETLKCKVVYFSSREKLKKGL 247
Query: 190 -IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+D + V + +H +K++GRHN+ N A + +D+ +D +
Sbjct: 248 FLDGDQIVYK---DGETVTEIVNIHELKLLGRHNHENVMAAVAIAMNMDVPMDT--IRRV 302
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL---------- 298
++ HR++ V GV + +DSK TN +A + + G +I
Sbjct: 303 VKRFEAVEHRIEFVTERF-GVKYYNDSKGTNPDAAMQAIKAMPGPTLLIAGGYDKHSEYD 361
Query: 299 -----LGGQAKF----GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIV 349
GG+ ++ G + I + +G + +A ++K+AV A GD ++
Sbjct: 362 EWIESFGGKVRYLVLIGQTRDKIAECAKRHGFTDIMYA-EDLKEAVQVCASYANAGDNVL 420
Query: 350 LSPGCASFDEFRNFEHRGMVFQE 372
LSP CAS+ F+N+E RG +F+E
Sbjct: 421 LSPACASWGMFKNYEERGRMFKE 443
>gi|313677377|ref|YP_004055373.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Marivirga
tractuosa DSM 4126]
gi|312944075|gb|ADR23265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marivirga
tractuosa DSM 4126]
Length = 455
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 182/377 (48%), Gaps = 54/377 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+ EL+FA KI+A+TGTNGKST +L G+ +GGN+G ++
Sbjct: 90 VIDELEFAFGFTKG--KIIAITGTNGKSTTTMLTYHLLKEAGLSVGLGGNIGKSMAGQLV 147
Query: 88 HCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145
F V+E SS+Q++ N F P ++++LN+TPDHL+R+ ++NY +
Sbjct: 148 DI--------DFDWWVLECSSFQIDGFVN--FKPHIAILLNITPDHLDRYDYKVENYVAS 197
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K LF + LL ++ +++ H F+ + F I E A+ P+ G
Sbjct: 198 KFSLFKNQGKEDFALLYTEDKLIHDYQVKHPFSSKLL-EFKFEDIPYEGAYAN---PS-G 252
Query: 206 VVSQL--QLHN-----MKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
++ L Q H + + G+HN NA + L+ I D ++ ++ ++ HR
Sbjct: 253 IIVNLDKQRHTFSQDLLTIKGKHNQTNAMASILTAKLTKIKND--KISESLPKFKSIQHR 310
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGVLIWKTLV 317
++ V +I G+ +++DSKATN++A L D + ++GG K YS + +
Sbjct: 311 LESVG-NIHGIEFINDSKATNVDAVYYAL-DAFTRPIIWIVGGVDKGNDYSQL---DAVS 365
Query: 318 NNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASFD 358
N +I C N M+DAV +++ + + ++LSP CASFD
Sbjct: 366 TNVKAIICLGKDNEKIKEHFKSRCPIIEETQSMQDAVEMGYKLSKDREVVLLSPACASFD 425
Query: 359 EFRNFEHRGMVFQELAF 375
F+N+E RG F+ LAF
Sbjct: 426 LFKNYEDRGNQFR-LAF 441
>gi|295105488|emb|CBL03032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
prausnitzii SL3/3]
Length = 467
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 175/385 (45%), Gaps = 55/385 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V SE++ P +I+AVTG++GK+T T + + G + +GGN+G
Sbjct: 100 MAAGTMVTSEVELFFDFCP--CEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAA 157
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L LP P+ VAVVE+SS+Q+ + + P ++VV N+TP+HL+ HK M+
Sbjct: 158 L------LPMLPEVSPE-DVAVVELSSFQL--ISMHASPNIAVVTNVTPNHLDHHKDMQE 208
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWIGAFPGVKIDTE 193
Y K ++ + +L + N+ + KG R + GAF
Sbjct: 209 YIDAKRNILLYQKQPCRAVLGYENEISRSMQADCKGKQVWFTRLHDTDNGAF------LR 262
Query: 194 AKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ + GVV+ L ++K+ G HN N AA +V G V VEA+
Sbjct: 263 KEDGMLCMAEDGVVTPFLAQKDVKLRGLHNIENLLAAAAAVWG---EVPVEAIRQVGSTF 319
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
HR++ V R + GV + +DS T+ T GL K +++ GG K
Sbjct: 320 TGVEHRIEPV-RTLDGVLYYNDSIGTSPTRTIAGLRSFD-RKVILIAGGYDKHIPYEPLA 377
Query: 305 ------------FGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAI 348
G +G I + + + ++P NM+ AV AR A GD I
Sbjct: 378 PEIIAHVKNLVLMGATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAAKPGDII 437
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+LSP ASFD + NFE RG F+++
Sbjct: 438 ILSPASASFDLYPNFEVRGREFKKI 462
>gi|237799288|ref|ZP_04587749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331022144|gb|EGI02201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 448
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 168/364 (46%), Gaps = 68/364 (18%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+N KSTV T VG M G VGGNLG P AL + V+
Sbjct: 111 IIAITGSNAKSTVTTLVGDMAKAAGKRVAVGGNLGTP---------ALDLLSDDIDLYVM 161
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNTKLGL 160
E+SS+Q+E ++ V+ VLN++ DH++R+ + Y K +F +VN + L
Sbjct: 162 ELSSFQLETTDQ-LNAEVATVLNISEDHMDRYTGLPAYHQAKHRIFRGARQVVVNRQDAL 220
Query: 161 --------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212
LP LN+ H F G++ + K +F+ + + +
Sbjct: 221 SRPLIGEGLPCWTFGLNKP-DFHGF---------GLREENGEKYLAFQFENL-----MPV 265
Query: 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWV 272
++KV G HN A A LG +G+ EA+ +++ HR Q + R+ GV +
Sbjct: 266 RDLKVRGAHN--QANALAALALGHAVGLPFEAMLASLREFTGLEHRCQWL-REHDGVDYY 322
Query: 273 DDSKATNLEATCTGLM----DLKGHKCVILLGGQAK--------------------FGYS 308
+DSKATN+ A + D+ G K V++ GG K G
Sbjct: 323 NDSKATNVGAALAAIKGLGSDIDG-KLVLIAGGDGKGADFSGLRAPVTEHCRAVVLLGRD 381
Query: 309 GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
LI + L G ++P V ++ AV + +A GDA++LSP CAS D F+N+E RG
Sbjct: 382 AELIAQVL---GDAVPLIRVDTLQAAVERSASLAQGGDAVLLSPACASLDMFKNYEERGR 438
Query: 369 VFQE 372
VF +
Sbjct: 439 VFAQ 442
>gi|195953887|ref|YP_002122177.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum
sp. Y04AAS1]
gi|254766052|sp|B4U609.1|MURD_HYDS0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|195933499|gb|ACG58199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum
sp. Y04AAS1]
Length = 411
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 169/371 (45%), Gaps = 50/371 (13%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
++S K V+ E + A + + I+AVTGT+GKST V + H GGN G P
Sbjct: 65 IKSSKEVIGETELAYRFY-KGKNIIAVTGTDGKSTTVHLI-----HHFTSFKEGGNFGTP 118
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE I L + K + +E SS+Q + + F P V V LN + DHL+ H ++++
Sbjct: 119 FSE-----IVLDNDK---ENVALEASSFQGKTLDT-FRPNVGVFLNFSKDHLDWHPSLED 169
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y L+K +F + + +L + + G V D K
Sbjct: 170 YLLSKQKIFKNQTQEDILILNAQKPVCDTPSLAKKIFFGENGDLKVVGSDVYYK------ 223
Query: 202 PAVGVVSQLQLHNM---KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+L + N+ + G HN +N AVA S + +G+ +E + +E P R
Sbjct: 224 ------DELLIENISHPSLKGLHNLYNIAVA--SFVAFSMGISLEEIKKNLETFEALPFR 275
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YSGVLIW---- 313
Q + + +G+ +DSK+T + A + L K +++ GG K G +S + +
Sbjct: 276 YQYL-GNFEGIDICNDSKSTTVNALMSALESTKA-PILLIAGGIDKGGDFSSIEAYKDKI 333
Query: 314 ---------KTLVNNGLS--IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
K L+ + + + + + +++ A+ + A GD I+ SP CASFD F +
Sbjct: 334 KAVFLYGKDKNLIKDQIEHFLKVYVLEDLESALLKVKEQARKGDTILFSPACASFDMFES 393
Query: 363 FEHRGMVFQEL 373
++HRG VF EL
Sbjct: 394 YKHRGEVFNEL 404
>gi|400406372|ref|YP_006589120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [secondary
endosymbiont of Heteropsylla cubana]
gi|400364625|gb|AFP85692.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [secondary
endosymbiont of Heteropsylla cubana]
Length = 438
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 196/411 (47%), Gaps = 80/411 (19%)
Query: 5 WLFLLEFQLKATG-------LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WLF + + G LA + SG ++ +++ A + S ++A+TG+NGKSTV
Sbjct: 62 WLFEATLIVTSPGISLSHPALAAVSSSGIPIVGDIELFAHEV--SAPVIAITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
+ + +M+ + VGGN G P A + + LP F++ ++E+SS+Q+E +
Sbjct: 120 IHMLEKMIG-VNWNVGVGGNTGVP----ALNLLDLP-----FEIYLLELSSFQLETTHNL 169
Query: 118 FCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTK-LGLLP--------- 162
T + VLN+T DH+ R+ + Y TK ++ + +VN + + LP
Sbjct: 170 KL-TAATVLNITEDHMNRYPHGFQQYRTTKLKIYKNAMICIVNAEDIFTLPINKNNSRYI 228
Query: 163 -FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
FG + + +K H+ + W+ A+ G +I A+ ++++G+H
Sbjct: 229 SFGRKQGDYFLKQHKGQI-WLMAY-GEQILNTAE-------------------LRIVGQH 267
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
NY NA A +G+ E+ S + + HR +++H GV W++DSKATN+
Sbjct: 268 NYMNALAALAIAD--AVGISRESSLSGLLQCQGLAHRFELIHEQ-SGVRWINDSKATNVG 324
Query: 282 ATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLI-WKTLVNNGLSIPCFAVANMK------D 333
+T L ++ + +++GG +K LI W L N + + CF + D
Sbjct: 325 STLAALNGVEVTGTLHLIMGGDSKCADLTPLIPW--LKNTKIHLYCFGQDRKRLSALRLD 382
Query: 334 AVNHARRM----------ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
A + + GD ++LSPGCAS D+F NFE RG VF +LA
Sbjct: 383 ATTLTKTLEEIMYIVGSRVRQGDVVLLSPGCASLDQFTNFEARGQVFSQLA 433
>gi|334140299|ref|YP_004533501.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
sp. PP1Y]
gi|333938325|emb|CCA91683.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
sp. PP1Y]
Length = 444
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 111/376 (29%), Positives = 171/376 (45%), Gaps = 56/376 (14%)
Query: 23 QSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
++G V+ +++ A P + +++ +TGTNGKST + V +L G+ A +GGN+G
Sbjct: 87 RAGVPVIGDIELFALARPSLPAHRVVGITGTNGKSTTTSLVHHLLEKAGVPARMGGNIGV 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P I P+ V V+E+SSYQ+++ C V+ +LN+TPDHL+R+
Sbjct: 147 P--------ILGTDPLPEGGVYVLELSSYQIDLTRSLDC-DVAALLNITPDHLDRYDGFA 197
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLN--EAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
YA +K LF+ + G+ + + +R L + G K+ T
Sbjct: 198 AYAASKARLFTMQGAEHDAVFGSGDAETAAIASTEANRRGLDHVRIVDGAKLTT------ 251
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
LQ + G HN NAAVA V L G+ E + R PHR
Sbjct: 252 -----------LQKKWPSLQGPHNLQNAAVAVAIVEAL--GIKPEQWKRAMRNFRGLPHR 298
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGGQAKFG-------YS 308
M+ V + GV +++DSKATN + L + ++GG K Y
Sbjct: 299 MERVA-EADGVFYINDSKATNPASAAPALAAFPPDPEPRIHWIVGGLPKGDDLDECAPYF 357
Query: 309 GVLIWKTLVNNGLSIPCFA-----------VANMKDAVNHARRMATNGDAIVLSPGCASF 357
G L + G + P FA M +A+ A A GD ++LSP CASF
Sbjct: 358 GNLAAAYTI--GDAGPRFAEILAPYTQVHRSEMMAEAIREAMAAARPGDVVMLSPACASF 415
Query: 358 DEFRNFEHRGMVFQEL 373
D+FR++E RG VF+++
Sbjct: 416 DQFRDYEARGEVFRQI 431
>gi|319789935|ref|YP_004151568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
ammonificans HB-1]
gi|317114437|gb|ADU96927.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
ammonificans HB-1]
Length = 413
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 178/391 (45%), Gaps = 81/391 (20%)
Query: 21 LLQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76
LL+ KR V E++ + S ++VTGTNGKST + L G E+F+GG
Sbjct: 56 LLEKAKRAGIPVYGEVELGYRF--SSGSFISVTGTNGKSTTTAVIYHALKLSGRESFIGG 113
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
N G PLS AL +++ F +E+SS+Q+E F VSV LN+TPDHL R+
Sbjct: 114 NYGIPLS-----TFALDTTEESF--TALELSSFQIEDLTS-FRSRVSVFLNVTPDHLNRY 165
Query: 137 KTMKNYALTKCHL---------------FSHMVNTKLGLLPFG---NQHLNEAIKGHRFN 178
+ + Y K L F H+ KLG+ F + + ++G
Sbjct: 166 SSFEEYREAKLRLLDFSDCAVVNGDDPSFKHL-KGKLGIYTFSVSTDSGADARVEGELL- 223
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
F G +I E+P G+ HN++ NY A VA V
Sbjct: 224 -----VFSGYRIPYR------ELPLKGI------HNLE-----NYLAALVALAVV----- 256
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
G+ E + + + PHR ++V R GV +V+DSKATN +A L + V++
Sbjct: 257 GLSEEEIYEGFKAFKGLPHRCEVVGRK-GGVVFVNDSKATNPDAMKKALESFR--SVVLI 313
Query: 299 LGGQAK---FGYSGVLIW---KTLVNNGLS----IPCF-------AVANMKDAVNHARRM 341
GG K F L+ K LV G + + F ++M++AV A +
Sbjct: 314 AGGSDKGLDFKELKPLVKSRVKALVAIGETAGKLVETFKEETYVLTASSMEEAVERAYAL 373
Query: 342 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
A + ++LSPGCASFD F+NF+ RG F+E
Sbjct: 374 AGDEGVVLLSPGCASFDMFKNFQERGERFRE 404
>gi|406577612|ref|ZP_11053213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD6S]
gi|404459712|gb|EKA06037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
sp. GMD6S]
Length = 450
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 172/371 (46%), Gaps = 44/371 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ + M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDL-ATKTEATVVPFSTKEKVDGAYLENGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQIIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
+Q V +I+GV + +DSK+TN+ AT L K +++ GG +
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G S + + G++ ++ DA A +AT GD ++LSP AS+D
Sbjct: 373 KKMVILGQSAERVKRAAEKAGVT--YVDATDIADATRKAYELATQGDVVLLSPANASWDM 430
Query: 360 FRNFEHRGMVF 370
+ NFE RG +F
Sbjct: 431 YANFEVRGDLF 441
>gi|417793528|ref|ZP_12440803.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK255]
gi|334272813|gb|EGL91170.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
oralis SK255]
Length = 450
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 173/372 (46%), Gaps = 46/372 (12%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K ++ ++M +L F NQ L + + + + G G + E
Sbjct: 203 YVAAKWNIQNNMAAADFLVLNF-NQDLAKELATKTQATVVPFSTKGKVDGAYL--ENGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L GVD + + T+ H
Sbjct: 260 YFRGEVVMTASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQIIKETLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------- 304
R+Q V +I+GV + +DSK+TN+ AT L K +++ GG +
Sbjct: 313 RLQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITG 371
Query: 305 ------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358
G S + + G++ ++ DA A +AT GD ++LSP AS+D
Sbjct: 372 LKKMVILGQSAERVKRAAEKAGVT--YVDATDIADATRKAYELATQGDVVLLSPANASWD 429
Query: 359 EFRNFEHRGMVF 370
+ NFE RG +F
Sbjct: 430 MYANFEVRGDLF 441
>gi|183599903|ref|ZP_02961396.1| hypothetical protein PROSTU_03424 [Providencia stuartii ATCC 25827]
gi|386742170|ref|YP_006215349.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Providencia
stuartii MRSN 2154]
gi|188022178|gb|EDU60218.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
stuartii ATCC 25827]
gi|384478863|gb|AFH92658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Providencia
stuartii MRSN 2154]
Length = 441
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 170/355 (47%), Gaps = 54/355 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV + VG+M GI VGGN+G P AL Q+ V+
Sbjct: 112 IIAITGSNGKSTVTSLVGEMAKAAGISVGVGGNIGIP---------ALSLLNQGHQLYVL 162
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + VLN+T DH++R+ + Y K ++ + +VN +
Sbjct: 163 ELSSFQLETTSS-LQALAATVLNVTEDHMDRYPLGLAQYRDAKLRIYHNAANCIVNAQDP 221
Query: 160 L-LPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKV 217
L LP +H EA G G DT+ + + A+ + + +M +
Sbjct: 222 LTLPRDRRH--EAC-------ISFGVDSGDYYFDTQQRLLVAKGQAI-----IDVADMHL 267
Query: 218 MGRHNYHNAAVAALSVLGLDI-GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
G+HNY NA A DI G++ +A ++ HR Q+V + GV W++DSK
Sbjct: 268 TGQHNYTNALAALALA---DIAGIERKACLDVLKNYAGLMHRFQLVLLN-NGVRWINDSK 323
Query: 277 ATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA-------- 327
ATN+ +T L LK + +LLGG K L L + + + CF
Sbjct: 324 ATNVGSTEAALNGLKVDGTLHLLLGGDGKAADFSPL-KPYLAQDNVRVYCFGRDGKALAQ 382
Query: 328 --------VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ ++ + +GD ++LSP CAS D+F+NFE RGM+F +LA
Sbjct: 383 LEPEKSVLTETMEQSMRYLAPHLKSGDMVLLSPACASIDQFKNFEQRGMIFAQLA 437
>gi|160945307|ref|ZP_02092533.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
M21/2]
gi|158443038|gb|EDP20043.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
[Faecalibacterium prausnitzii M21/2]
Length = 467
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 175/385 (45%), Gaps = 55/385 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ +G V SE++ P +I+AVTG++GK+T T + + G + +GGN+G
Sbjct: 100 MAAGTMVTSEVELFFDFCP--CEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAA 157
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L LP P+ VAVVE+SS+Q+ + + P ++VV N+TP+HL+ HK M+
Sbjct: 158 L------LPMLPEVSPE-DVAVVELSSFQL--ISMHASPNIAVVTNVTPNHLDHHKDMQE 208
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGH-----RFNLAWIGAFPGVKIDTE 193
Y K ++ + +L + N+ + KG R + GAF
Sbjct: 209 YINAKRNILLYQKQPCRAVLGYENEISRSMQADCKGKQVWFTRLHDTDNGAF------LR 262
Query: 194 AKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252
+ + GVV+ L ++K+ G HN N AA +V G V VEA+
Sbjct: 263 KEDGMLCMAEDGVVTPFLAQKDVKLRGLHNIENLLAAAAAVWG---EVPVEAIRQVGSTF 319
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------- 304
HR++ V R + GV + +DS T+ T GL K +++ GG K
Sbjct: 320 TGVEHRIEPV-RTLDGVLYYNDSIGTSPTRTIAGLRSFD-RKVILIAGGYDKHIPYEPLA 377
Query: 305 ------------FGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAI 348
G +G I + + + ++P NM+ AV AR A GD I
Sbjct: 378 PEIIAHVKNLVLMGATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAAKPGDII 437
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+LSP ASFD + NFE RG F+++
Sbjct: 438 ILSPASASFDLYPNFEVRGREFKKI 462
>gi|448240518|ref|YP_007404571.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
marcescens WW4]
gi|445210882|gb|AGE16552.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
marcescens WW4]
Length = 439
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 165/355 (46%), Gaps = 52/355 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G VGGN+G P AL + + Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWAVGVGGNIGLP---------ALSLLRQECQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + + +LN+T DH++R+ ++ Y K ++ + +VN
Sbjct: 158 ELSSFQLETTHS-LRAAAATILNVTEDHMDRYPFGLQQYRGAKLRVYENAAVCVVNA--- 213
Query: 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ L ++G GA G ++ + V V L MK+
Sbjct: 214 -----DDALTMPVRGADERCVSFGADVGDYHLNRQQGETWLRVRGEKV---LNTREMKLT 265
Query: 219 GRHNYHNAAVAALSVLGLDI--GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
GRHNY NA A ++I ++AL + + HR Q+ + GV W++DSK
Sbjct: 266 GRHNYTNALAALALADAVNIPRASSLKALTTFTGL----AHRFQLAWEN-NGVRWINDSK 320
Query: 277 ATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA-------- 327
ATN+ +T L L+ + +LLGG K L + L + + + CF
Sbjct: 321 ATNVGSTEAALNGLQVDGTLHLLLGGDGKSADFSPLA-RYLQGDNVRLYCFGRDGAQLAQ 379
Query: 328 ----VANMKDAVNHARRMATN----GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
VA + + + A R GD ++LSP CAS D+FRNFE RG F LA
Sbjct: 380 LRPEVATLTETMEQAMRTIAGRVQPGDMVLLSPACASLDQFRNFEVRGDEFARLA 434
>gi|306825643|ref|ZP_07458982.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sp. oral taxon 071 str. 73H25AP]
gi|304432004|gb|EFM34981.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
sp. oral taxon 071 str. 73H25AP]
Length = 450
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 173/371 (46%), Gaps = 44/371 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTATAKDT-------LVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ ++M +L F NQ L + + + + K+D E
Sbjct: 203 YVAAKWNIQNNMAAADFLVLNF-NQDLAKEL-ATKTQATVVPFSTKEKVDGAYLENGQLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V S++ V G HN N A+A ++V L GVD + + T+ HR
Sbjct: 261 FRGEVVMAASEI-----GVPGSHNVEN-ALATIAVAKLR-GVDNQIIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304
+Q V +I+GV + +DSK+TN+ AT L K +++ GG +
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G S + + G++ ++ DA A +AT GD ++LSP AS+D
Sbjct: 373 KKMVILGQSAERVKRAAEKAGVT--YVDATDIADATRKAYELATQGDVVLLSPANASWDM 430
Query: 360 FRNFEHRGMVF 370
+ NFE RG +F
Sbjct: 431 YANFEVRGDLF 441
>gi|295092964|emb|CBK82055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprococcus sp.
ART55/1]
Length = 453
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 171/374 (45%), Gaps = 72/374 (19%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI A+TGTNGK+T VG+++ + V GN+G P +E L + V
Sbjct: 108 KIAAITGTNGKTTTTALVGEIVKAHNAKTIVVGNIGIPYTE-------LCDTTDDDSDTV 160
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E F P VS +LNLTPDHL RH T +NY K + + + +L +
Sbjct: 161 AEISSFQLETVID-FHPNVSAILNLTPDHLNRHYTFENYGNVKFSITKNQTMDDVTVLNY 219
Query: 164 GNQH---LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV-------------- 206
++H + E K H + + + E PA GV
Sbjct: 220 DDEHTRAMGEKAKDHCHVVYF---------------SRLEKPAGGVYVEDGDIILEDGDK 264
Query: 207 -VSQLQLHNMKVMGRHNYHNAAVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQIVH 263
++ L + ++K+MG HN N L+ +G+ +GV V+ + + HR++ V
Sbjct: 265 KINVLAIKDLKLMGAHNVENV----LAAVGISYYMGVPVDVIRDVATSFKAVAHRIEYVD 320
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG---------YSGVLIWK 314
+ GV + +DSK TN +A G+ + L+GG G + G + W
Sbjct: 321 T-VDGVAYYNDSKGTNPDAAIKGIQAMVA--PTFLIGGGYDKGSEYDEWIEAFDGKVKWL 377
Query: 315 TLV------------NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362
L+ +G + F N++DAV + A +GDA++LSP CAS+ +F N
Sbjct: 378 VLIGQTAQKIADCAKRHGFNSIIFE-ENLQDAVAYCHENAVDGDAVLLSPACASWGQFDN 436
Query: 363 FEHRGMVFQELAFS 376
+E RG +F+E S
Sbjct: 437 YEQRGDMFKEYVRS 450
>gi|450100021|ref|ZP_21858593.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF1]
gi|450169802|ref|ZP_21883180.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM4]
gi|449220581|gb|EMC20434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SF1]
gi|449246659|gb|EMC44957.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SM4]
Length = 451
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 180/369 (48%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEANPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|395236429|ref|ZP_10414624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
sp. Ag1]
gi|394728856|gb|EJF28891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
sp. Ag1]
Length = 438
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 187/399 (46%), Gaps = 55/399 (13%)
Query: 5 WLFLLEFQLKATG-------LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + G L+ + +G V+ +++ + I+A+TG+NGKSTV
Sbjct: 62 WLLAADLIIASPGVALATPALSAAVDAGVEVIGDIELFCR--EAQAPIVAITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T VG+M G+ VGGN+G P AL ++ V+E+SS+Q+E +
Sbjct: 120 TTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDKGCELYVLELSSFQLETTHS- 169
Query: 118 FCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR 176
+ VLN+T DH++R+ M+ Y K ++ N K+ ++ + L ++G
Sbjct: 170 LKAAAATVLNVTEDHMDRYPFGMQQYRAAKLSIYE---NAKVCVVN-ADDALTMPVRGAD 225
Query: 177 FNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235
G G ++ + V + L MK++G+HNY NA A
Sbjct: 226 ERCISFGVDVGDYHLNRQQGDTWLRVKGEKI---LNTKEMKLVGQHNYTNALAALALADA 282
Query: 236 LDIGVDVEALNSTIEILRTP---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG 292
+++ +S+++ L T HR Q+ + GV W++DSKATN+ +T L L
Sbjct: 283 VNL-----PRSSSLKALTTYTGLAHRFQLAW-ERNGVRWINDSKATNVGSTEAALNGLHV 336
Query: 293 HKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA------------VANMKDAVNHAR 339
+ +LLGG K L + L + + + CF +A + + A
Sbjct: 337 EGTLHLLLGGDGKSADFSPLA-RYLQGDRVRLYCFGRDGAELAELRPDIAERTETMEQAM 395
Query: 340 RMAT----NGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
++AT +GD ++LSP CAS D+F+NFE RG +F +LA
Sbjct: 396 KLATARVESGDMVLLSPACASLDQFKNFEQRGDMFTQLA 434
>gi|225011611|ref|ZP_03702049.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
bacterium MS024-2A]
gi|225004114|gb|EEG42086.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
bacterium MS024-2A]
Length = 445
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 175/377 (46%), Gaps = 41/377 (10%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L + G ++SE++FA+ ++ + T +T++T+ ++L + G+ + GN
Sbjct: 81 LDALRKQGSSILSEIEFASHYTNATLIGITGTNGKTTTTMLTY--EILKNAGLNVGLAGN 138
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G A ++ +F V+E+SS+Q++ + F P +SV+ N+TPDHL+R+
Sbjct: 139 IGT--------SFARQVAQEQFDYYVLEISSFQLDNIHD-FAPHISVITNITPDHLDRYS 189
Query: 138 -TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKT 196
+++NY +K + + L + L EAI H+ + + G ++ E T
Sbjct: 190 YSLENYIKSKFKIIQNQTQKDFFLFNADDPILKEAISEHKNKASKVPY--GFEVKREGST 247
Query: 197 ASFE---VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
+ + + + + GRHN NA AA LDI D + ++ +
Sbjct: 248 HENDHLILKHRNKNTMIDTTQFTLTGRHNLLNAMAAATIGSLLDISKDT--IRESLTHFK 305
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW 313
PHRM+ V IQ V++++DSKATN+ AT L + + ++GG K G +
Sbjct: 306 GAPHRMEKV-LTIQRVSYINDSKATNVNATYFALESIDT-PLIWIVGGVDK-GNDYTTLL 362
Query: 314 KTLVNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGC 354
+ +I C N M +AV A ++A D ++LSP C
Sbjct: 363 PLIRTKAKAIICLGEDNEALKNTFERVTDIFIETQSMSEAVKIAHKVAAPKDTVLLSPAC 422
Query: 355 ASFDEFRNFEHRGMVFQ 371
ASFD F N+E RG F+
Sbjct: 423 ASFDLFENYEDRGNQFK 439
>gi|452752897|ref|ZP_21952636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
proteobacterium JLT2015]
gi|451959719|gb|EMD82136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
proteobacterium JLT2015]
Length = 429
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 161/352 (45%), Gaps = 65/352 (18%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP-LSEAAFHCIALPSSKPKFQVA 102
++ +TGTNGKST + L G+ A +GGN+G P LS+ P V
Sbjct: 110 SVVGITGTNGKSTTTALIHHTLIEAGVPATLGGNIGEPILSQ---------RPAPAGGVY 160
Query: 103 VVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL 161
V+E+SSYQ+++ + C V+V+LN+TPDHL+R+ ++ YA +K LF + ++
Sbjct: 161 VLELSSYQIDLTHSLAC-DVAVLLNITPDHLDRYDDSVDAYAASKARLFQMQAAGGVAVI 219
Query: 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
G + A++ +R L F GV D Q + + G H
Sbjct: 220 -TGTDDYSRAVQANRAPL-----FEGVADD-------------------QPNWPALAGPH 254
Query: 222 NYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N N A+AA +VL +G+ E L + HRM+ V D GV WV+DSKATN +
Sbjct: 255 NRQN-AIAAATVL-RALGLSEEELRAGFRSFGGLAHRMERVA-DRGGVLWVNDSKATNAD 311
Query: 282 ATCTGLMDLKGHKCVILLGGQAKF-------GYSGVLIWKTLVNNGLSIPCFAVANMKDA 334
+ L + +LGG K Y + L+ G + P F A +
Sbjct: 312 SAAPALGAYD--RIHWILGGVPKGPDLTPCEPYYPHVAAAYLI--GEAAPVFETA-LTGK 366
Query: 335 VNHARRMAT-------------NGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
V + T G+ ++LSP CASFD+FR++E RG F+ L
Sbjct: 367 VARVKNSGTLAQAVADAAAAARPGETVLLSPACASFDQFRDYEDRGRQFRAL 418
>gi|313885109|ref|ZP_07818861.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
coleocola ACS-139-V-Col8]
gi|312619800|gb|EFR31237.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
coleocola ACS-139-V-Col8]
Length = 457
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 170/358 (47%), Gaps = 55/358 (15%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGK+T + ++ LG +A + GN+G P+ + + + V+
Sbjct: 114 MIAITGSNGKTTTTALINEI---LGEKAILAGNIGIPI----LSVVGETQADKRL---VM 163
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q++ +F P + V+ N+ P HL+ H +M+ Y K + +++ + +
Sbjct: 164 EISSFQLQ-GTSFFKPKIGVITNIYPTHLDYHGSMEAYIAAKLKIAANLDEQDFLVYNYD 222
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ-----------LQLH 213
+ L EA K + +K+ + E+ A G+ Q L L
Sbjct: 223 QEILQEAAKSIK----------AIKLPFSRTQVTPELVAEGLYLQDGQVIYHNQPILSLD 272
Query: 214 NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVD 273
++K+ G HN N +AAL+V ++ VD+ + +TIE + PHR++ V +G + +
Sbjct: 273 SIKIPGDHNIEN-VLAALAVAVIE-KVDLPQVKATIEAYKGMPHRIEHV-ASFKGREFYN 329
Query: 274 DSKATNLEATCTGLMDLKGHKCVILLGG------------------QAKFGYSGVLIWKT 315
DSKATN+ AT T L ++ +I +GG + F Y
Sbjct: 330 DSKATNMTATITALASF--NQDLIYIGGGLDRGNEFDDLIPHLGHIKQAFLYGETKEKMA 387
Query: 316 LVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ IP N+++A + A + G ++ SP CAS+D+F++FE RG F++L
Sbjct: 388 KAFEKVDIPFVLADNLREASHLAYQATQAGQVLLFSPACASWDQFKSFEIRGDQFKDL 445
>gi|449883572|ref|ZP_21785242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SA38]
gi|449925353|ref|ZP_21800214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 4SM1]
gi|449161617|gb|EMB64798.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans 4SM1]
gi|449249652|gb|EMC47759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
mutans SA38]
Length = 451
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 181/369 (49%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVAEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTEKDFLVLNF-NQDLVKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q + +I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDIKGL 372
Query: 314 KTLVNNGLSIPCFAVA---------NMKDAVNHAR---RMATNGDAIVLSPGCASFDEFR 361
K ++ G S P A N KD R + A+ GD ++LSP AS+D ++
Sbjct: 373 KKMIILGESAPRLKHAAVQAGVTYLNAKDVAQATRIAFQEASPGDVVLLSPANASWDMYK 432
Query: 362 NFEHRGMVF 370
NFE RG F
Sbjct: 433 NFEVRGDEF 441
>gi|453064720|gb|EMF05684.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Serratia
marcescens VGH107]
Length = 439
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 164/355 (46%), Gaps = 52/355 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G VGGN+G P AL + + Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMAKAAGWAVGVGGNIGLP---------ALSLLRQECQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + +LN+T DH++R+ ++ Y K ++ + +VN
Sbjct: 158 ELSSFQLET-TYSLRAAAATILNVTEDHMDRYPFGLQQYRGAKLRVYENAAVCVVNA--- 213
Query: 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ L ++G GA G ++ + V V L MK+
Sbjct: 214 -----DDALTMPVRGADERCVSFGADVGDYHLNRQQGETWLRVRGEKV---LNTREMKLT 265
Query: 219 GRHNYHNAAVAALSVLGLDI--GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
GRHNY NA A ++I ++AL + + HR Q+ + GV WV+DSK
Sbjct: 266 GRHNYTNALAALALADAVNIPRASSLKALTTFTGL----AHRFQLAWEN-NGVRWVNDSK 320
Query: 277 ATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA-------- 327
ATN+ +T L L+ + +LLGG K L + L + + + CF
Sbjct: 321 ATNVGSTEAALNGLQVDGTLHLLLGGDGKSADFSPLA-RYLQGDNVRLYCFGRDGAQLAQ 379
Query: 328 ----VANMKDAVNHARRMATN----GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
VA + + + A R GD ++LSP CAS D+FRNFE RG F LA
Sbjct: 380 LRPEVATLTETMEQAMRTIAGRVQPGDMVLLSPACASLDQFRNFEVRGDEFARLA 434
>gi|379022992|ref|YP_005299653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
canadensis str. CA410]
gi|376323930|gb|AFB21171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
canadensis str. CA410]
Length = 455
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 180/378 (47%), Gaps = 56/378 (14%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+ S++D + R++ +AV GTNGKST + +LN G++ V GN+G P +A
Sbjct: 90 ITSDIDLLFEK-SRNLNFIAVIGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALKA-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+SK + V+E+SS+Q+++ K F ++V+LN+TPDHL+RHK M Y K
Sbjct: 147 -----KNSKDGY---VLELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHKDMNGYIKAKS 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEA-IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
+F M ++ N + + +K + + F KI + + +
Sbjct: 198 KIFDRMDKNSYAVINIDNDYCRKIFMKLQQEQRIKLIPFSVTKILEKGISVVNNIINYSF 257
Query: 207 V--SQLQL-HNMKVMGRHNYHN--AAVAALSVLGLDIGVD-VEALNSTIEILRTPPHRMQ 260
S +L N + G HN N A+ A ++GL+ +EA++S ++ PHRMQ
Sbjct: 258 FGNSNFKLPFNKNLQGIHNCENIAASYAVAKIMGLEESTKIIEAISS----FQSLPHRMQ 313
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAK--------------- 304
+ I +++ +DSKATN + L +K + L GG K
Sbjct: 314 YIGS-INNISFYNDSKATN---AISALQSIKALDNIYWLAGGIPKEGGIKEIMPYFNRIK 369
Query: 305 ----FGYSGVLIWKTLVNNGLSIPCFAVAN-MKDAVNHARRMATNGDA----IVLSPGCA 355
+G + + T+ N I FA+ N +K + A + A A I+L+P C+
Sbjct: 370 KAYFYGQAKEMFADTVKN----IVDFAICNDLKQVFDLAYKDAVGDTAAVKNILLAPSCS 425
Query: 356 SFDEFRNFEHRGMVFQEL 373
S+D+F+NFE RG +F +L
Sbjct: 426 SYDQFKNFEERGELFIKL 443
>gi|405983693|ref|ZP_11041998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Slackia piriformis
YIT 12062]
gi|404388508|gb|EJZ83590.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Slackia piriformis
YIT 12062]
Length = 485
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 123/391 (31%), Positives = 184/391 (47%), Gaps = 57/391 (14%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++ V+SE++FA + +AVTGTNGK+T T + +L G GN+G
Sbjct: 103 EASASVISEVEFAWRESRADSSWIAVTGTNGKTTTTTLITHILETAGKRVAAVGNIGTT- 161
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
CI +S V V EVSS+Q+ + F P V+V+LN+TPDHL H T Y
Sbjct: 162 ------CIESVASDAA-DVYVAEVSSFQLASMD-LFAPQVAVLLNITPDHLYWHMTFDAY 213
Query: 143 ALTKCHLFSHMVNTKLGLL-----PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
A K +++ H+ +T L+ + E + ++I G +D A
Sbjct: 214 AEAKKNIYRHLDDTHGTLVIDAVCDVTRACVKEFKEKTERGFSYIPLGCGAGLDCSMIDA 273
Query: 198 ----------------SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241
++ +V +V+ LH + G HN NA AA + L GV
Sbjct: 274 CGSENAAWLSDGMLHVDYKGESVDLVAASSLH---IKGEHNASNALAAASAALAA--GVA 328
Query: 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
E + + + HR++ DI GV++ DDSKATN++ATC L + LLGG
Sbjct: 329 PEVVRRGLRSFKPLEHRLEPCG-DIAGVSFFDDSKATNVDATCKALSAFPKGSAIFLLGG 387
Query: 302 QAK-------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 342
K FG +G ++ L + L IP +M+DA++ A +A
Sbjct: 388 HDKGTELDELVEAASVCRAIVCFGAAGQRFFEAL--SPLDIPVELADHMEDALDRAIALA 445
Query: 343 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+++VLSP CASFDEF +FEHRG VF++L
Sbjct: 446 QPGNSVVLSPACASFDEFDSFEHRGRVFKQL 476
>gi|295696465|ref|YP_003589703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kyrpidia tusciae
DSM 2912]
gi|295412067|gb|ADG06559.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kyrpidia tusciae
DSM 2912]
Length = 454
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 188/383 (49%), Gaps = 49/383 (12%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A ++ G V++EL+ A ++ P + L +TGTNGK+T ++VG ML G+ V GN
Sbjct: 88 VAEAIRRGIPVVTELEVAWRIRPENW--LGITGTNGKTTTTSWVGHMLEVAGVPHRVAGN 145
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + A+ S + V E+SS+Q++ + F P + +LN+ P HL+ H
Sbjct: 146 IGVPLCDV---VEAIDSE----EWLVAELSSFQLQGTLR-FRPHIGAILNIYPAHLDYHG 197
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA-----FPGVKIDT 192
++ YA K ++F + +L G + ++ + G R A G PG+ ++
Sbjct: 198 GLEAYAAAKKNMFVNQGPEDYAVLNGGRKDEHQLMAGVRARPARFGGPRRPGVPGMAVEG 257
Query: 193 EAKT--ASFEVPAVGVVSQLQLHNMKVMGRHNYHN-AAVAALSVLGLDIGVDVEALNSTI 249
+ F V V + L G HN N A L+VL G + A+ ++
Sbjct: 258 DRVLWWDGFRAEPVCAVGDVALP-----GEHNLENFLAAGTLAVLA---GASLSAVATSG 309
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG--Y 307
R HRM+ V R QGVT+ +DSKATN EA L K VI + G G Y
Sbjct: 310 RTFRGVEHRMEFV-RQWQGVTFYNDSKATNPEAAFRALGAFP--KNVIWIAGGLDRGDDY 366
Query: 308 SGVLIW------KTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIV 349
+L KT++ G S IP VA++++AV A +A GD ++
Sbjct: 367 RRLLPLLQEGRVKTVLTMGQSGPRIAALAQEVGIPVRRVADVEEAVRIAVSLARGGDVVL 426
Query: 350 LSPGCASFDEFRNFEHRGMVFQE 372
LSPG AS+D++R+FE RG +F+E
Sbjct: 427 LSPGAASWDQYRSFEERGRMFKE 449
>gi|409099452|ref|ZP_11219476.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter agri
PB92]
Length = 463
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 184/381 (48%), Gaps = 53/381 (13%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L+ G V+SE++FAA+ K++ +TG+NGKST +L + G+ + GN+G
Sbjct: 100 LVAQGTPVISEIEFAARYT--DAKMICITGSNGKSTTSLLTYHILKNAGLNVSLAGNIG- 156
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139
H A + + V+E+SS+ ++ F ++V+LN+TPDHL+R+ +
Sbjct: 157 -------HSFAAQVAAESYDYYVLEISSFMLDDMFD-FKADIAVLLNITPDHLDRYDYKL 208
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP---GVKIDTEAKT 196
+NYA +K + + + + ++ E++K FP IDT
Sbjct: 209 ENYAASKMRIIQNQKADDVFIYCADDE---ESLKALANISPLAKTFPFSITKNIDT---G 262
Query: 197 ASFEVPAVGVVSQ------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
A E + ++++ + + ++ + G+HN +N+ + + L++ D + ++
Sbjct: 263 AYLEENTIHILTEPNKELTMSISDLALQGKHNIYNSMASGIVAKVLELRNDT--IRESMG 320
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV 310
+ HR++ V + I G+ +++DSKATN+ +T L + V+++GG K +
Sbjct: 321 NFKNIEHRLEHVAK-ISGIDFINDSKATNVNSTWYALESMTSD-VVLIMGGVDKGNDYNM 378
Query: 311 LIWKTLVNNGL-SIPCFAVANMK-------------------DAVNHARRMATNGDAIVL 350
L K LV + + +I C N + +A A +A GDA++L
Sbjct: 379 L--KDLVKSKVKAIVCLGKDNKRIHDAFEDDVEVIVNTFSAEEAAQIAFHLAKRGDAVLL 436
Query: 351 SPGCASFDEFRNFEHRGMVFQ 371
SP CASFD F+N+E RG F+
Sbjct: 437 SPACASFDLFKNYEDRGNQFK 457
>gi|148381457|ref|YP_001255998.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
botulinum A str. ATCC 3502]
gi|153933316|ref|YP_001385832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
botulinum A str. ATCC 19397]
gi|153936485|ref|YP_001389239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
botulinum A str. Hall]
gi|166224758|sp|A7FZA3.1|MURD_CLOB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|166224759|sp|A5I7P2.1|MURD_CLOBH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|148290941|emb|CAL85077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
botulinum A str. ATCC 3502]
gi|152929360|gb|ABS34860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
botulinum A str. ATCC 19397]
gi|152932399|gb|ABS37898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
botulinum A str. Hall]
Length = 458
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 172/388 (44%), Gaps = 63/388 (16%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+SG + SE++ + P K+ +TG++GK+T T V +ML G +VGGN+G PL
Sbjct: 99 ESGAYITSEMEEFIKYCPA--KVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
A + + V+E+SS+Q+ + P +S++ NL+P+HL+ HK + Y
Sbjct: 157 -------FANIEEMKEDHMVVLELSSFQLMTMD--VSPEISLITNLSPNHLDVHKDFEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLP--------FGNQHLNEAIKGHRFNLAWIGA-FPGVKIDTE 193
K ++F + + L +L N+ L + +K + GA K+ +
Sbjct: 208 VWAKKNIFKYQSSNNLLVLNKDDDLTNGMENEALGDVLKFSLVEKVYNGACLSNNKLTIQ 267
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
K ++K+ GRHN N +AA ++ + +D ++
Sbjct: 268 GKEVC------------DSKDIKLKGRHNIANL-LAAFCMVNKYVSID--SMKYVATNFS 312
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------A 303
HR + + R++ G+ + +DS A++ T GL K VIL+ G A
Sbjct: 313 GVEHRCEFI-REVNGIKYYNDSIASSPSRTLAGLNSF--EKPVILIAGGYDKKIPFEPLA 369
Query: 304 KFGYSGVLIW---------------KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
+ GY + I K + + V +M++AV A MA GD I
Sbjct: 370 EGGYDKIKILILMGDTKNKIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEKGDII 429
Query: 349 VLSPGCASFDEFRNFEHRGMVFQELAFS 376
LSP CASFD + NFE RG F+ + S
Sbjct: 430 TLSPACASFDMYPNFEIRGNEFKNIVNS 457
>gi|421836548|ref|ZP_16270992.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
botulinum CFSAN001627]
gi|409741534|gb|EKN41319.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
botulinum CFSAN001627]
Length = 458
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 171/385 (44%), Gaps = 63/385 (16%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G + SE++ + P K+ +TG++GK+T T V +ML G +VGGN+G PL
Sbjct: 99 EAGAYITSEMEEFIKYCPA--KVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
A + + V+E+SS+Q+ + P +S++ NL+P+HL+ HK + Y
Sbjct: 157 -------FANIEEMKEDHMVVLELSSFQLMTMD--VSPEISLITNLSPNHLDVHKDFEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLL--------PFGNQHLNEAIKGHRFNLAWIGA-FPGVKIDTE 193
K ++F + + L +L N+ L + +K + GA K+ +
Sbjct: 208 VWAKKNIFKYQSSNNLLVLNKDDDLTNEMENEALGDVLKFSLVEKVYNGACLSNNKLTIQ 267
Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
K ++K+ GRHN N +AA ++ + +D ++
Sbjct: 268 GKEVC------------DSKDIKLKGRHNIANL-LAAFCMINKYVSID--SMKYVATNFS 312
Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------A 303
HR + + R++ GV + +DS A++ T GL K VIL+ G A
Sbjct: 313 GVEHRCEFI-REVNGVKYYNDSIASSPSRTLAGLNSF--EKPVILIAGGYDKKIPFEPLA 369
Query: 304 KFGYSGVLIW---------------KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348
+ GY + I K + + V +M++AV A MA GD I
Sbjct: 370 EGGYDKIKILILMGDTKNKIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEKGDII 429
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
LSP CASFD + NFE RG F+ +
Sbjct: 430 TLSPACASFDMYPNFEIRGNEFKNI 454
>gi|387783861|ref|YP_006069944.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius JIM8777]
gi|338744743|emb|CCB95109.1| uDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
salivarius JIM8777]
Length = 450
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 173/377 (45%), Gaps = 48/377 (12%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+A L+ G V +E++ A V I+ +TG+NGK+T T + +LNH G + GN
Sbjct: 89 VARALEKGIPVWTEVELAYLV--SEAPIIGITGSNGKTTTTTMIADVLNHGGKSGVLSGN 146
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P SE A A + V+E+SS+Q+ + F P ++V+ NL P H++ H
Sbjct: 147 IGFPASEVAQSVTAQDT-------LVMELSSFQL-MGIDSFHPHIAVITNLMPTHIDYHG 198
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKT 196
T + Y K ++ + M +L F NQ L + + A + F V K+D
Sbjct: 199 TFEEYVAAKWNIQNQMTADDFVVLNF-NQDLAKELATQ--TKAQVVPFSTVEKVD----G 251
Query: 197 ASFEVPAVGVVSQL--QLHNMKVMGRHNYHNA----AVAALSVLGLDIGVDVEALNSTIE 250
A E + +L Q + V G HN NA AVA LS G+ +A+ T+
Sbjct: 252 AYLENGGLYFKGELVMQADEIGVPGSHNVENALATIAVAKLS------GISNQAIKETLA 305
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV 310
HR+Q V I V + +DSK+TN+ AT L K +++ GG +
Sbjct: 306 SFGGVKHRLQFVDT-IDEVRFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDE 364
Query: 311 LI-----WKTLVNNGLSIPCFAVA------------NMKDAVNHARRMATNGDAIVLSPG 353
LI K +V G S P A ++ DA A A+ GD ++LSP
Sbjct: 365 LIPDITGLKKMVILGESAPRVKRAADKAGVTYLDAKDVADATRIAFDQASAGDVVLLSPA 424
Query: 354 CASFDEFRNFEHRGMVF 370
AS+D ++NFE RG F
Sbjct: 425 NASWDMYKNFEVRGDEF 441
>gi|300715306|ref|YP_003740109.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia billingiae
Eb661]
gi|299061142|emb|CAX58249.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
Eb661]
Length = 438
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 168/355 (47%), Gaps = 52/355 (14%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG M G + VGGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGDMAKAAGWQVGVGGNIGLP----ALMLLEQPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + +LN+T DH++R+ M+ Y K ++ + +VN
Sbjct: 158 ELSSFQLET-TASLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRVYENAAVCVVNA--- 213
Query: 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPG-VKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
+ + ++G G G + TE+ + V + ++ +M ++
Sbjct: 214 -----DDAMTFPVRGLDARCVSFGINAGDYHLATESGESWLNVKGDNL---MKTSDMTLV 265
Query: 219 GRHNYHNAAVAALSV--LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSK 276
G+HN NA A +GL + ++AL + + HR QI D GV W++DSK
Sbjct: 266 GQHNQTNALAALALAEAVGLPLASSLKALTTFSGL----AHRFQIAL-DRNGVRWINDSK 320
Query: 277 ATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGLSIPCF-----AVAN 330
ATN+ +T L L+ + +LLGG K L + L + + CF A+A
Sbjct: 321 ATNVGSTEAALNGLQVQGTLWLLLGGDGKSADFSPLT-RYLQGDNVRTYCFGRDAQALAE 379
Query: 331 MK-----------DAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
++ DA+ GD ++LSP CAS D+F+NFE RG F +LA
Sbjct: 380 LRPEIAVRTETLADAMKQIATQVKPGDMVLLSPACASLDQFKNFERRGDAFTQLA 434
>gi|126726619|ref|ZP_01742459.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
bacterium HTCC2150]
gi|126703948|gb|EBA03041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
bacterium HTCC2150]
Length = 465
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 166/361 (45%), Gaps = 58/361 (16%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K++A+TG+NGKST + +L +G + + GN+G + + +V V
Sbjct: 121 KVIAITGSNGKSTTSALMHHILTRVGRPSQLAGNIGRGVLDI--------DPAIDGEVVV 172
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----------- 152
+E+SSYQ ++ + P V+V NL+PDHL+RH M Y K LF+
Sbjct: 173 LELSSYQTDLA-RSLTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVD 231
Query: 153 -----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
M+ +L P ++ + ++ G + W F VK A+T + V
Sbjct: 232 EAEGRMLANQLAEGPVDDRVIRVSVAGKLTGMGW-NIF--VKKGFLAETRKGKQ-----V 283
Query: 208 SQLQLHNMKVM-GRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ + L ++ + G HN+ NAA+ AAL LGL V + + PHR Q V
Sbjct: 284 ASIDLRSVAALPGVHNHQNAAMVYAALRTLGLAPKV----IEAGFHDFAGLPHRSQPVG- 338
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW----------- 313
+I GV +++DSKATN+++ L K + ++ GGQAK G L+
Sbjct: 339 EIDGVKYINDSKATNVDSAAMALKAFKNIRWIV--GGQAKEGGISSLVPLMGDVTRAYVI 396
Query: 314 ----KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 369
K + + I M +AV A A GD ++L+P ASFD++ +FE RG
Sbjct: 397 GTDPKPFLADLTEIDHVICNTMDEAVKQAASDANAGDVVLLAPASASFDQYPDFEKRGED 456
Query: 370 F 370
F
Sbjct: 457 F 457
>gi|410667611|ref|YP_006919982.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
[Thermacetogenium phaeum DSM 12270]
gi|409105358|gb|AFV11483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
[Thermacetogenium phaeum DSM 12270]
Length = 455
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/370 (29%), Positives = 180/370 (48%), Gaps = 38/370 (10%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+ SEL+ A+++I I +A+TGTNGK+T +G + GI A V GN+G PL
Sbjct: 96 IWSELELASRLIGEPI--IAITGTNGKTTTTALLGYIFEKAGIPAAVAGNIGIPLIREVD 153
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ K VVEVSS+Q+E ++ F P ++V LNLTPDH++RH +++Y K
Sbjct: 154 RVL---HGGRKVHYWVVEVSSFQLERIDR-FRPHIAVFLNLTPDHIDRHGDLESYGKIKS 209
Query: 148 HLFSHMVNTKLGLLPFGNQHLNE---AIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+F++ ++ + L A+ + + P I + + +
Sbjct: 210 RIFANQGADDWAVVNLDDSWLASNMPAVTSRVYGFS-RRRLPAEGIGVQGGEICYHLK-- 266
Query: 205 GVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
G +L +K+ G HN NA AA + L GVD E++ + PHR++ V
Sbjct: 267 GKRERLCAADTVKMPGPHNLENALAAAAAA--LLAGVDRESVAGALATFPGVPHRLEEV- 323
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------------- 304
R ++GV +V+DSK TN E+ L D + +++ GG+ K
Sbjct: 324 RVLKGVKYVNDSKGTNPESVSRAL-DSFTNPVILIAGGRHKGSDFEELARKVKEKAKALI 382
Query: 305 -FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
G + +I + + G + A++ + V A R+A GD ++LSP CAS+D FR++
Sbjct: 383 LIGEAAGIIRQAVSGTGFK-NIYDAASLAEGVQIASRLAEPGDVVLLSPACASWDMFRDY 441
Query: 364 EHRGMVFQEL 373
E RG F++L
Sbjct: 442 EERGECFKKL 451
>gi|335029375|ref|ZP_08522882.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis SK1076]
gi|334268672|gb|EGL87104.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
infantis SK1076]
Length = 450
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 173/369 (46%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LKKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N + K+D E
Sbjct: 203 YVEAKWNIQSNMTAADYLVLNF-NQELAKEL-ATKTNATVVPFSTLEKVDGVYLEGGYLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GVD E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNETIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q V +I+GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 314 KTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
K +V G S + ++ DA A +A GD ++LSP AS+D +
Sbjct: 373 KKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAFELAEEGDVVLLSPANASWDMYA 432
Query: 362 NFEHRGMVF 370
NFE RG +F
Sbjct: 433 NFEVRGDLF 441
>gi|119944901|ref|YP_942581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
ingrahamii 37]
gi|119863505|gb|ABM02982.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
ingrahamii 37]
Length = 445
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 180/382 (47%), Gaps = 58/382 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSI----KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L +G ++ +++ A+ + + K++ ++G+NGKSTV + +G+M I+ VGGN
Sbjct: 83 LANGCEIIGDIELFARELSKPAYAHAKLVTISGSNGKSTVTSLLGEMAVAAKIKVAVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL P+ + ++E+SS+Q+E ++ +LN++ DH++R+
Sbjct: 143 IGIP---------ALDLLSPEIDLYILELSSFQLETTFS-LNADIATLLNISEDHMDRYD 192
Query: 138 TMKNYALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTE 193
+ Y K L+ + N L N LN+ G LA+ G+ D +
Sbjct: 193 SYAQYTAAKHRLYQQCKMALYNRDDKLTYPKNHSLNKTSFGFD-KLAY-----GLVTDAD 246
Query: 194 AKT--ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
+ A P L +K+ G+HN+ N +AA + LG +G+ + + ++
Sbjct: 247 KQIFLAKNGSPI------LAAKQLKLSGKHNWMNT-LAAFA-LGEAVGLSEIGMFTALQA 298
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKFGY 307
PHR + V +I V W++DSKATN+ A L+ L G+ VIL G +
Sbjct: 299 YSGLPHRCEFV-AEINNVRWINDSKATNIGAAQAALLGLSETIPGNVHVILGGDGKGADF 357
Query: 308 SGV-LIWKTLVNNGLSIPCFAVANMKDAVNHARRM---------------ATNGDAIVLS 351
S + L+ K + G+ I CF V K A H R + A GD ++LS
Sbjct: 358 SELALVLKEI--QGM-IVCFGVDGKKIAAQHKRALLVENLEQAVENIFTTAQAGDLVILS 414
Query: 352 PGCASFDEFRNFEHRGMVFQEL 373
P CAS D ++NF RG F+ L
Sbjct: 415 PACASLDMYKNFMQRGDHFKRL 436
>gi|307708861|ref|ZP_07645321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK564]
gi|307620197|gb|EFN99313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
mitis SK564]
Length = 450
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 174/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LSKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F + A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELASK--TQATVVPFSTQEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V +I+GV + +DSK+TN+ AT L K +++ GG + L+ K +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKADVSYVDATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|187777501|ref|ZP_02993974.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
15579]
gi|187774429|gb|EDU38231.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
sporogenes ATCC 15579]
Length = 458
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 176/379 (46%), Gaps = 45/379 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G + SE++ + P +I VTG++GK+T T V +ML G + +VGGN+G PL
Sbjct: 99 EAGAYITSEMEEFIKYCPANI--FGVTGSDGKTTTTTLVYEMLKKEGYKTWVGGNIGTPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
A + + V+E+SS+Q+ + P +S++ NL+P+HL+ HK + Y
Sbjct: 157 -------FANIEEMKEDHMVVLELSSFQLMTMD--VSPEISLITNLSPNHLDVHKDFEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K ++F + N L +L ++ N + + L I F V+ + S
Sbjct: 208 VEAKKNIFKYQENNDLLVLNKDDELTN---RMEKEALGNILKFSLVEKVYDGACLSNNKL 264
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
+ ++K+ GRHN N +AA ++ + +D ++ HR + +
Sbjct: 265 TILGKEVCDSKDIKLKGRHNIANL-LAAFCMVNKYVSID--SMKYVATNFSGVEHRCEFI 321
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------AKFGYSGV-- 310
R++ GV + +DS A++ T GL K VIL+ G A+ GY +
Sbjct: 322 -REVNGVKYYNDSIASSPSRTLAGLNAF--EKPVILIAGGYDKKIPFEPLAEEGYDKIKT 378
Query: 311 LIW-------------KTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
LI K +++ I V +M++AV A ++ GD I LSP CASF
Sbjct: 379 LILMGDTKSKIKSAFEKVILDKKCKIEIVMVNSMEEAVKVADDISEKGDIITLSPACASF 438
Query: 358 DEFRNFEHRGMVFQELAFS 376
D + NFE RG F+ + S
Sbjct: 439 DMYPNFEIRGNEFKNMVNS 457
>gi|116627601|ref|YP_820220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus LMD-9]
gi|122267801|sp|Q03L98.1|MURD_STRTD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|116100878|gb|ABJ66024.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
thermophilus LMD-9]
Length = 450
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/350 (30%), Positives = 163/350 (46%), Gaps = 46/350 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGK+T T + +LNH G + GN+G P SE A S V+
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFPASEVA-------QSVTNQDTLVM 166
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+ + + F P ++V+ NL P H++ H + + Y K ++ + M + +L F
Sbjct: 167 ELSSFQL-MGIESFHPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSDDFIILNF- 224
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLH--NMKVMGRH 221
NQ L + + A + F V K+D A E + +L +H + V G H
Sbjct: 225 NQDLAKELATQTN--AQVVPFSTVEKVD----GAYLENGGLYFKGELLMHADELGVPGSH 278
Query: 222 NYHNA----AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
N NA AVA LS GV +A+ T+ HR+Q V I V + +DSK+
Sbjct: 279 NVENALATIAVAKLS------GVSNQAIKETLSSFGGVKHRLQFVDT-IDDVKFYNDSKS 331
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTLVNNGLSIPCFAVA--- 329
TN+ AT L K +++ GG + LI K +V G S P A
Sbjct: 332 TNILATQKALSGFDNSKVILIAGGLDRGNEFDELIPDITGLKKMVILGESAPRVKRAADK 391
Query: 330 ---------NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
++ DA A A+ GD ++LSP AS+D ++NFE RG F
Sbjct: 392 TGVTYLDAKDVADATRIAFEQASAGDVVLLSPANASWDMYKNFEVRGDEF 441
>gi|254468605|ref|ZP_05082011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [beta
proteobacterium KB13]
gi|207087415|gb|EDZ64698.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [beta
proteobacterium KB13]
Length = 444
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 166/366 (45%), Gaps = 53/366 (14%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
F Q+ + K++ +TGTNGK+T + + +L+ +++ GN+G P+ + +
Sbjct: 98 FLNQIDRKKTKLIGITGTNGKTTFCSLLASILSFNDLKSIAVGNIGIPI-------LNIL 150
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH- 152
+++ KF VVE+SSYQ+E+ +K V+LN+ PDHL+R+ + +Y K L +H
Sbjct: 151 TTQNKFDYIVVELSSYQIEVLDKMTVFDYGVILNIEPDHLDRYDSFIDYKNAKLKLANHS 210
Query: 153 --MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTASFEVPAVGVV 207
+++ K + N H N AFP D E KT F +
Sbjct: 211 KTILHDKESAVV--NDHAN--------------AFPIDPKDFHIEEIKTDFFTFKKQNKI 254
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
++ +K G HN N + ++ + E + + + PHR + + D
Sbjct: 255 YRIDTPYLK--GVHNVKNIMYLLKLLEIMNCNISFEKVRNFFRNQKGIPHRFEYLSID-N 311
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------------------FGY 307
+++DSKATNL +T + L L G K +L GG K +G
Sbjct: 312 NYIFINDSKATNLASTKSALNSLNG-KIHLLFGGDLKNQPLDGIENFFNEKLISLNLYGK 370
Query: 308 SGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRG 367
V+I L+N + +++ + +++ + I+LSPGCAS D F N++ RG
Sbjct: 371 DAVIIKDYLLNKKIKFDMKCFVSLEAILESIKKIVKKDEIILLSPGCASQDMFMNYQDRG 430
Query: 368 MVFQEL 373
F E+
Sbjct: 431 NQFVEV 436
>gi|344203331|ref|YP_004788474.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Muricauda
ruestringensis DSM 13258]
gi|343955253|gb|AEM71052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Muricauda
ruestringensis DSM 13258]
Length = 444
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 181/374 (48%), Gaps = 40/374 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L++ G V+SE++FA++ ++ + +TG+NGK+T +L + + GN+G+
Sbjct: 82 LVEKGVSVISEIEFASKYTDATL--IGITGSNGKTTTTMLTNHLLKGGDLNVGMAGNIGD 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHK-T 138
++ ++ F V+E+SS+Q++ I + F P ++V+ N+TPDHL+R+
Sbjct: 140 SYAKMV--------AEQDFDHYVLEISSFQLDGIVD--FKPHIAVITNITPDHLDRYDYK 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA--KT 196
+NY +K + + + ++ + + +K H I K++ A +
Sbjct: 190 FENYIASKFRIAINQDENDYLIYDADDEVIGDWLKKHPVQSKLIPFSVKRKLEEGAWLEN 249
Query: 197 ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ ++ ++ + + G+HN N A+++ + + V E + +I+ + P
Sbjct: 250 KTIKIKLEHKTLEMSEDILALKGQHNVKNTMAASMAAML--VKVRKETIRQSIQSFQGVP 307
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTL 316
HR++ V + I V +++DSKATN+ AT L +K K ++ + G G + +
Sbjct: 308 HRLENVLK-INHVEYINDSKATNVNATFYALDGIK--KPIVWIAGGVDKGNDYSELMPLV 364
Query: 317 VNNGLSIPCFAVAN-------------------MKDAVNHARRMATNGDAIVLSPGCASF 357
+I C N M++AV A ++A GDA++LSP CASF
Sbjct: 365 REKVKAIICLGADNSKLKDAFGNVINLMVETYSMEEAVKVAYKIAERGDAVLLSPACASF 424
Query: 358 DEFRNFEHRGMVFQ 371
D F+++E RG F+
Sbjct: 425 DLFKSYEDRGDQFK 438
>gi|294783653|ref|ZP_06748977.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
sp. 1_1_41FAA]
gi|294480531|gb|EFG28308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
sp. 1_1_41FAA]
Length = 432
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 188/418 (44%), Gaps = 92/418 (22%)
Query: 9 LEFQLKATGLAC------LLQSGKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVT 59
+EF +K+ G+ + + G +V+ E++ A + KI+A+TGTNGKST
Sbjct: 48 IEFFIKSPGIPYNDFVKEVQKRGIKVLDEIEVAYNYMVEKNLKTKIIAITGTNGKSTTTA 107
Query: 60 FVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYF 118
+ +LNH G +A GN+G LSEA H + +E+SS+Q+E + N F
Sbjct: 108 KISDLLNHAGYKACYAGNIGRSLSEALLH-------EKDLDFVSLELSSFQLENVEN--F 158
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN---EAIKGH 175
P +S+++N+ PDH+ER+ + Y TK ++ + + + + + + IK
Sbjct: 159 RPYISMIINMGPDHIERYNSFDEYYDTKFNIAKNQDENQYFIENIDDVEIEKRAKQIKAK 218
Query: 176 RFNLAWIGAFPGVKIDTEAKTASFEVPA----VGVVSQLQLHNMKVMGRHNYHNA--AVA 229
R ++ +++K A+ V VG ++ + + G HN N VA
Sbjct: 219 RISV------------SKSKEANVYVEDNKIYVGKDFIIEADKLSLKGIHNLENTLFMVA 266
Query: 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT------ 283
+L +D E L + + HR ++ + V +++DSKATN+++T
Sbjct: 267 TAEIL----NIDREKLKEFLMVATPLEHRTELFF-NYGDVKFINDSKATNVDSTKFAIQA 321
Query: 284 -------CTGL---MDL--------KGHKCVILLGGQA--------KFGYSGVLIWK-TL 316
C G +DL + K V L+G A K GY I K
Sbjct: 322 NKDSILICGGYDKGVDLAPLAEMIKENIKEVYLIGVIADKIETELKKVGYEASKIHKLET 381
Query: 317 VNNGLSIPCFAVANMKDAVNHARRMATNGDAIV-LSPGCASFDEFRNFEHRGMVFQEL 373
V N L ++ +R + D ++ LSP +S+D+F +FEHRG VF+EL
Sbjct: 382 VENSL-------------LDMKKRFTKDSDEVILLSPATSSYDQFNSFEHRGKVFKEL 426
>gi|408492202|ref|YP_006868571.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Psychroflexus
torquis ATCC 700755]
gi|408469477|gb|AFU69821.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Psychroflexus
torquis ATCC 700755]
Length = 447
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 107/388 (27%), Positives = 184/388 (47%), Gaps = 65/388 (16%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L +SG +++SE++FA+ +I + +TG+NGK+TV V +L + G+ + GN+G
Sbjct: 82 LRESGIKIVSEIEFASWFTGANI--IGITGSNGKTTVTNMVYHILKNAGLSVSMAGNVGF 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER-HKTM 139
+E ++ F V+E+SS+Q++ F P ++++ ++TPDHL+R H
Sbjct: 140 SFAEQV--------ARQSFHNYVLELSSFQLDGVED-FRPHIAILTSITPDHLDRYHDNF 190
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA---------FPGVKI 190
+ Y K + + TK L + K + + W+ F I
Sbjct: 191 QEYIQAKFKITKNQ--TKDDFLIYN--------KDDKVIVNWLEKNTVKAQLIPFTNTTI 240
Query: 191 DTEAKTASFEVPAVGV-----VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
T+ +A E + + + + ++++ V G HN NA A+ + L I + +
Sbjct: 241 MTDL-SAFIENNKINIKLNHNLFTMSVNDLSVKGDHNTRNAMAASTAARLLKIR--KQTI 297
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF 305
++E + HR++ + + I V +++DSKATN+ AT L D V ++GG K
Sbjct: 298 RESMESFQGVEHRLEQLGK-INKVAFINDSKATNINATFYAL-DSMTAPTVWIVGGVDKG 355
Query: 306 G-YSGVLIWKTLVNNGL-SIPCFAV-------------------ANMKDAVNHARRMATN 344
Y +L LVN + +I C + +NM DAV A + +
Sbjct: 356 NVYEDLL---PLVNEKVKAIVCLGIDNQKIYNSFSNCVDTIIESSNMTDAVAKAYGLTED 412
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQE 372
DA++LSP CASFD F N+E RG F+E
Sbjct: 413 NDAVLLSPACASFDLFENYEDRGRQFKE 440
>gi|255533212|ref|YP_003093584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter
heparinus DSM 2366]
gi|255346196|gb|ACU05522.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pedobacter
heparinus DSM 2366]
Length = 447
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 178/369 (48%), Gaps = 43/369 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V+SE++FA + K + +TG+NGK+T +L + G+ + GN+G
Sbjct: 91 VLSEIEFAKRYTK--AKTICITGSNGKTTTTMLTYHILKNAGLNVGLAGNIG-------- 140
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-TMKNYALT 145
H A + F V+E+SS+ ++ + Y F ++V+LN+TPDHL+R+ + NYA +
Sbjct: 141 HSFAAQVASADFDWYVLEISSFMLD--DMYDFKADIAVLLNITPDHLDRYDYKLGNYAAS 198
Query: 146 KCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVG 205
K + + + + + ++ +A+K + + KI+ A S +
Sbjct: 199 KMRITQNQTSEDIFIYCADDEETLKALKNVKVDSKTYPFSIRKKIEKGAYLESNNIHINI 258
Query: 206 VVSQ---LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
++ + + + + G+HN +N+ + + LDI A+ ++ + HR++ V
Sbjct: 259 NLNDQLTMSITELALQGKHNIYNSMASGIVAKVLDIRN--TAIRESMGDFKNIEHRLEHV 316
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGL- 321
R I GV +++DSKATN+ +T L + G ++++GG K +L K +V +
Sbjct: 317 AR-ISGVDYINDSKATNVNSTWYALESV-GTDVILIMGGVDKGNDYDML--KDMVRQKVK 372
Query: 322 SIPCFAVANMK-------------------DAVNHARRMATNGDAIVLSPGCASFDEFRN 362
+I C N + +AV A +A G+ ++LSP CASFD F+N
Sbjct: 373 AIVCLGKDNKRIHEAFEDDVEIIVNTFSAHEAVQVAYHLAKKGNTVLLSPACASFDLFKN 432
Query: 363 FEHRGMVFQ 371
+E RG F+
Sbjct: 433 YEDRGNQFK 441
>gi|55820797|ref|YP_139239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus LMG 18311]
gi|55822698|ref|YP_141139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus CNRZ1066]
gi|386086409|ref|YP_006002283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
thermophilus ND03]
gi|386344422|ref|YP_006040586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme) [Streptococcus
thermophilus JIM 8232]
gi|387909506|ref|YP_006339812.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus MN-ZLW-002]
gi|62900662|sp|Q5M0D5.1|MURD_STRT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|62900663|sp|Q5M4Y2.1|MURD_STRT2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|55736782|gb|AAV60424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
thermophilus LMG 18311]
gi|55738683|gb|AAV62324.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
thermophilus CNRZ1066]
gi|312278122|gb|ADQ62779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
thermophilus ND03]
gi|339277883|emb|CCC19631.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
(UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
(D-glutamic acid-adding enzyme) [Streptococcus
thermophilus JIM 8232]
gi|387574441|gb|AFJ83147.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
thermophilus MN-ZLW-002]
Length = 450
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/350 (30%), Positives = 163/350 (46%), Gaps = 46/350 (13%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+ +TG+NGK+T T + +LNH G + GN+G P SE A S V+
Sbjct: 114 IIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFPASEVA-------QSVTNQDTLVM 166
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164
E+SS+Q+ + + F P ++V+ NL P H++ H + + Y K ++ + M + +L F
Sbjct: 167 ELSSFQL-MGIESFHPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSDDFIILNF- 224
Query: 165 NQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLH--NMKVMGRH 221
NQ L + + A + F V K+D A E + +L +H + V G H
Sbjct: 225 NQDLAKELATQTN--AQVVPFSTVEKVD----GAYLENGGLYFKGELLMHADELGVPGSH 278
Query: 222 NYHNA----AVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277
N NA AVA LS GV +A+ T+ HR+Q V I V + +DSK+
Sbjct: 279 NVENALATIAVAKLS------GVSNQAIKETLSSFGGVKHRLQFVDT-IDDVKFYNDSKS 331
Query: 278 TNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTLVNNGLSIPCFAVA--- 329
TN+ AT L K +++ GG + LI K +V G S P A
Sbjct: 332 TNILATQKALSGFDNSKVILIAGGLDRGNEFDELIPDITGLKKMVILGESAPRVKRAADK 391
Query: 330 ---------NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
++ DA A A+ GD ++LSP AS+D ++NFE RG F
Sbjct: 392 AGVTYLDAKDVADATRIAFEQASAGDVVLLSPANASWDMYKNFEVRGDEF 441
>gi|417935287|ref|ZP_12578607.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis bv. 2 str. F0392]
gi|340771857|gb|EGR94372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
mitis bv. 2 str. F0392]
Length = 450
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 174/370 (47%), Gaps = 42/370 (11%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV-KID---TEAKTA 197
Y K ++ + M +L F NQ L + + A + F + K+D E
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELATK--TQATVVPFSTLEKVDGAYLEDGQL 259
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
F V S++ V G HN N A+A ++V L G+D + + + H
Sbjct: 260 YFRGEVVMAASEI-----GVPGSHNIEN-ALATIAVAKLR-GIDNQTIKEVLSAFGGVKH 312
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI----- 312
R+Q V +I+GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 313 RLQFVD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITG 371
Query: 313 WKTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
K +V G S + ++ DA A +AT GD ++LSP AS+D +
Sbjct: 372 LKKMVILGQSAERVKRAAEKAGVAYVDATDIADATRKAYELATEGDVVLLSPANASWDMY 431
Query: 361 RNFEHRGMVF 370
NFE RG +F
Sbjct: 432 ANFEVRGDLF 441
>gi|309799972|ref|ZP_07694172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
infantis SK1302]
gi|308116371|gb|EFO53847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
infantis SK1302]
Length = 450
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 172/369 (46%), Gaps = 40/369 (10%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LEKGIPVLTEVELAYLI--SDAPIVGITGSNGKTTTTTMIGEVLTAAGQNGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGIQEFHPEIAVITNLMPTHIDYHGSFEA 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID---TEAKTAS 198
Y K ++ S+M +L F NQ L + + + N + K+D E
Sbjct: 203 YVAAKWNIQSNMTAADYLVLNF-NQELAKEL-ATKTNATVVPFSTLEKVDGAYLEDGLLY 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F V + + V G HN N A+A ++V L GVD E + T+ HR
Sbjct: 261 FRGEKV-----MAADEIGVPGSHNVEN-ALATIAVAKLR-GVDNEIIKETLSAFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----W 313
+Q V + I GV + +DSK+TN+ AT L K +++ GG + L+
Sbjct: 314 LQFVDQ-INGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGL 372
Query: 314 KTLVNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361
K +V G S + ++ DA A +A GD ++LSP AS+D +
Sbjct: 373 KKMVILGQSAERVKRAADKAGVAYVDATDIADATRKAYELAEEGDVVLLSPANASWDMYA 432
Query: 362 NFEHRGMVF 370
NFE RG +F
Sbjct: 433 NFEVRGDLF 441
>gi|50122739|ref|YP_051906.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
[Pectobacterium atrosepticum SCRI1043]
gi|60390382|sp|Q6D0I1.1|MURD_ERWCT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|49613265|emb|CAG76716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pectobacterium
atrosepticum SCRI1043]
Length = 438
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 164/369 (44%), Gaps = 80/369 (21%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV T VG+M G + VGGN+G P A + P+ Q+ V+
Sbjct: 107 IVAITGSNGKSTVTTLVGEMARAAGWQVGVGGNIGLP----ALQLLEHPA-----QLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E + +LN+T DH R+ ++ Y K H++ H +VN
Sbjct: 158 ELSSFQLETTTSLHA-AAATILNVTEDHTNRYPFGLQQYRAAKLHIYEHADLCVVNADDA 216
Query: 160 L---------------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
L + G+ HLN +G W+ ++D E
Sbjct: 217 LTMPVRGADARCRSFGVDVGDYHLNRQ-QGE----TWL------RVDGE----------- 254
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--GVDVEALNSTIEILRTPPHRMQIV 262
L +K++G+HNY NA A + I + AL S + PHR Q+
Sbjct: 255 ---RVLNTREIKLVGQHNYTNALAALALADAVKIPRASALTALTSFTGL----PHRFQMA 307
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNGL 321
+ GV W++DSKATN+ +T L L + +LLGG K L+ L +
Sbjct: 308 F-ERNGVRWINDSKATNVGSTEAALSGLAVDGTLHLLLGGDGKSADFSPLV-PYLQGERI 365
Query: 322 SIPCFA------------VANMKDAVNHARRMATN----GDAIVLSPGCASFDEFRNFEH 365
+ CF +A + + A R+ GD ++LSP CAS D+FR+FE
Sbjct: 366 RLYCFGRDGQQLAALRPEIAEQTETMEQAMRVIAERIRPGDMVLLSPACASLDQFRSFEQ 425
Query: 366 RGMVFQELA 374
RG F LA
Sbjct: 426 RGDEFARLA 434
>gi|406983107|gb|EKE04355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [uncultured
bacterium]
Length = 453
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 173/354 (48%), Gaps = 41/354 (11%)
Query: 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101
S+ +A+TGTNGK+T V ++L + G A GN+G P+ I+L KP
Sbjct: 110 SVPFIAITGTNGKTTTTKLVSEILTNAGYNAPACGNIGLPV-------ISL-VEKPDIDY 161
Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161
V EVSSYQ+E N+ F P +++ LN TPDH++ H + + Y K LF+ + +L
Sbjct: 162 FVAEVSSYQIET-NQVFKPQIALFLNYTPDHIDWHGSEEAYFEAKAGLFTDHRSPIWAIL 220
Query: 162 PFGNQHLNEAIKGHRFNLAWIG-AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220
+ + E N+ + G PG + + F + +++ ++ ++G+
Sbjct: 221 NACDPKICELRHKSLSNVVYFGREMPGPSVYMK-DNKIFAKSKNKIEKIIEVEDISLIGK 279
Query: 221 HNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
HNY N AA+A SV + V+ + + TI+ + P HR++ V I G+++ +DSKAT
Sbjct: 280 HNYQNIMAAIAIASV----VQVESDTIRETIKNFKAPEHRLEYVTA-IGGISYYNDSKAT 334
Query: 279 NLEATCTGLMDLKGHKCVILLGGQAK--------------------FGYSGVLIWKTLVN 318
N ++T L K V++ GG+ K G + + L +
Sbjct: 335 NCDSTICALKAFNDDKVVLIAGGRDKGTDLNELVETIKKQAAHVVLIGEAADRFQQALQD 394
Query: 319 NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
+ AV +++A++ A + ++ +P CASFD F+NFE RG VF++
Sbjct: 395 GNYTNISRAVT-LEEAIDAAGNLKLG--PVLFAPACASFDMFKNFEERGRVFKD 445
>gi|381165606|ref|ZP_09874833.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Phaeospirillum
molischianum DSM 120]
gi|380685096|emb|CCG39645.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Phaeospirillum
molischianum DSM 120]
Length = 453
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 170/376 (45%), Gaps = 44/376 (11%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V+ ++ A+ P + + +AV+GTNGKST T + +L G GGNLG
Sbjct: 92 AGIPVVCDVALLARARPDA-RFVAVSGTNGKSTTTTLLAHLLAQSGRPTAAGGNLGT--- 147
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
AA LP V+E+SSYQ+E+ + + +LN+TPDHL RH M+ Y
Sbjct: 148 -AALDLADLPEGG----SIVLELSSYQLELSDGLGL-KAAALLNITPDHLGRHGGMEGYI 201
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
K LF ++V ++ ++ + + + G + I + A
Sbjct: 202 AAKRKLFDYLVPGGTAVVAVDDEPCRAIADELAGRGMRVVRISVLAALAQGVSAPDGVLL 261
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
V V + + GRHN+ N V A + GV +A + + HR +
Sbjct: 262 DNGVPVADLRRFPRLP--GRHNWQN--VCAAYAVARAEGVSPDAAIAALATYPGLAHRQE 317
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAK--------------- 304
+V ++ V W++DSKATN +AT L+ H+ + ++GG+ K
Sbjct: 318 LVA-ELNDVAWINDSKATNADATEKALV---CHESIHWIVGGRPKEGGIDALAPYFPRIA 373
Query: 305 ----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEF 360
G S +TL +P + AV A R A G ++LSP CAS+D+F
Sbjct: 374 HAYLIGESTEAFVRTLAGK---VPYTCCGELGAAVELAWRQAKAGSVVLLSPACASWDQF 430
Query: 361 RNFEHRGMVFQELAFS 376
++FEHRG VF+E+ +
Sbjct: 431 KSFEHRGDVFREMVMA 446
>gi|225854210|ref|YP_002735722.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae JJA]
gi|418182294|ref|ZP_12818855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43380]
gi|254766060|sp|C1CD51.1|MURD_STRZJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|225722576|gb|ACO18429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae JJA]
gi|353850531|gb|EHE30535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA43380]
Length = 450
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 174/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGLFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLVKDLASK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|289168282|ref|YP_003446551.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
gi|288907849|emb|CBJ22689.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
Length = 450
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 173/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIVGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +
Sbjct: 151 ASQVA-------QTATDKDTLVMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFEE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + R A + F + A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKELA--RKTQATVVPFSTQEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A + V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIVVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V +I+GV + +DSK+TN+ AT L K +++ GG + L+ K +
Sbjct: 317 VD-EIKGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVDATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|422315209|ref|ZP_16396648.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
periodonticum D10]
gi|404592749|gb|EKA94504.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
periodonticum D10]
Length = 432
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/418 (26%), Positives = 189/418 (45%), Gaps = 92/418 (22%)
Query: 9 LEFQLKATGLAC------LLQSGKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVT 59
+EF +K+ G+ + + G +V+ E++ A + KI+A+TGTNGKST
Sbjct: 48 IEFFIKSPGIPYNDFVKEVQKRGIKVLDEIEVAYNYMVEKNLKTKIIAITGTNGKSTTTA 107
Query: 60 FVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYF 118
+ +LN+ G +A GN+G LSEA H + +E+SS+Q+E + N F
Sbjct: 108 KISDLLNYAGYKACYAGNIGRSLSEALLH-------EKDLDFVSLELSSFQLENVEN--F 158
Query: 119 CPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLN---EAIKGH 175
P +S+++N+ PDH+ER+K+ Y TK ++ + + + + + + IK
Sbjct: 159 RPYISMIINMGPDHIERYKSFDEYYDTKFNIAKNQDENQYFIENIDDVEIEKRAKQIKAK 218
Query: 176 RFNLAWIGAFPGVKIDTEAKTASFEVPA----VGVVSQLQLHNMKVMGRHNYHNA--AVA 229
R ++ +++K A+ V VG ++ + + G HN N VA
Sbjct: 219 RISV------------SKSKEANIYVEDNKIYVGKDFIIEADKLSLKGIHNLENTLFMVA 266
Query: 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT------ 283
+L +D E L + + HR ++ + V +++DSKATN+++T
Sbjct: 267 TAEIL----NIDREKLKEFLMVATPLEHRTELFF-NYGKVKFINDSKATNVDSTKFAIQA 321
Query: 284 -------CTGL---MDL--------KGHKCVILLGGQA--------KFGYSGVLIWK-TL 316
C G +DL + K V L+G A K GY I K
Sbjct: 322 NKNSILICGGYDKGVDLVPLAEMIKENIKEVYLIGVIADKIETELKKVGYEASKIHKLET 381
Query: 317 VNNGLSIPCFAVANMKDAVNHARRMATNGDAIV-LSPGCASFDEFRNFEHRGMVFQEL 373
+ N L ++ +R + D ++ LSP +S+D+F +FEHRG VF+EL
Sbjct: 382 IENSL-------------LDMKKRFTKDSDEVILLSPATSSYDQFNSFEHRGKVFKEL 426
>gi|339441319|ref|YP_004707324.1| hypothetical protein CXIVA_02550 [Clostridium sp. SY8519]
gi|338900720|dbj|BAK46222.1| hypothetical protein CXIVA_02550 [Clostridium sp. SY8519]
Length = 452
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 172/351 (49%), Gaps = 34/351 (9%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KILA+TGTNGK+T + +G+++ G + V GN+G P + S V V
Sbjct: 109 KILAITGTNGKTTTTSLLGEIMKASGADVKVVGNIGIPYTSEV-------SDSTDDTVTV 161
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E ++ F P V+ VLN+TPDHL RH TM+NY K ++ + + +L +
Sbjct: 162 AEISSFQLETIDQ-FHPNVAAVLNITPDHLNRHHTMENYIRAKLNIAKNQTAEDVCVLNY 220
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHN 222
++ L + + + W + +K + G V+++ + + ++GRHN
Sbjct: 221 EDEILRDRAHALQAKIIWFSSARVLKDGYYLDGDTICCAEQGTVNRIVETTELNILGRHN 280
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
+ NA AA GV + + S + + HR++ V + +G+ + +DSK TN +A
Sbjct: 281 HENAMAAAAMAHAA--GVSFDTIASVLRSFQAVEHRIEYV-TEKRGIRFYNDSKGTNPDA 337
Query: 283 TCTGLMDLKGHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLS 322
G+ + +++ GG K G + I + G +
Sbjct: 338 AIKGIQAMD-RPTLLIAGGYDKQSDYKEWIRSFDGKVKKLVLLGQTAEKIAQEAKELGFT 396
Query: 323 IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
FA ++++AV+ + A NGD ++LSP CAS+ F N+E RG +F+E+
Sbjct: 397 DYVFA-DSLQEAVDICYQSAENGDTVLLSPACASWGMFPNYEVRGRMFKEM 446
>gi|89891769|ref|ZP_01203271.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
bacterium BBFL7]
gi|89515924|gb|EAS18589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
bacterium BBFL7]
Length = 452
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 187/389 (48%), Gaps = 58/389 (14%)
Query: 15 ATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74
AT + ++++ V+SE++FA++ ++I A+TG+NGK+TV + +G +L + +
Sbjct: 84 ATIVQKIIEANIPVISEIEFASR-FSDEVEI-AITGSNGKTTVTSLIGHILQIANYDVTI 141
Query: 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE 134
GGN+G A ++ + V+EVSS+Q++ K F P V+V+LN+TPDHL+
Sbjct: 142 GGNIG--------QSYAAQVAESPAEYRVLEVSSFQLD-GIKTFKPKVAVLLNITPDHLD 192
Query: 135 RHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-------FNLAW---IG 183
R+ +NY +K + + + + + EAI + F++ G
Sbjct: 193 RYDYKFENYVASKMRIAMNQDENDFLIYNADDPTIQEAIIQFKPKSKLVPFSMQQALEYG 252
Query: 184 AF-PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
AF +I+ T F +P + + + G+HN NA AA + L I
Sbjct: 253 AFIKDQQININLDTNLFTMP---------IQKLSIKGQHNTANAMAAATTAKLLQIRK-- 301
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302
E + ++ + HR++ V + I V +++DSKATN+ AT L ++ I+ G
Sbjct: 302 ETIRQSLASFQGVEHRLEQVLK-INKVQYINDSKATNVNATYYALDSMEKPTVWIVGGVD 360
Query: 303 AKFGYSGVLIWKTLVNNGL-SIPCFAVAN-------------------MKDAVNHARRMA 342
YS + LVN + +I C N M+DAV A ++A
Sbjct: 361 KGNNYSDLF---ALVNKNVKAIVCLGNDNSKIVEAFSGCVDNMVETSSMEDAVRVAYKLA 417
Query: 343 TNGDAIVLSPGCASFDEFRNFEHRGMVFQ 371
GD ++LSP CASFD F N+E RG F+
Sbjct: 418 GPGDNVLLSPACASFDLFENYEDRGRQFK 446
>gi|430750520|ref|YP_007213428.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermobacillus
composti KWC4]
gi|430734485|gb|AGA58430.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermobacillus
composti KWC4]
Length = 473
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 112/395 (28%), Positives = 183/395 (46%), Gaps = 59/395 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ G +++E++ A + I+ +TG+NGK+T T +G++L G + V GN+G P
Sbjct: 93 LELGIEIVTEVEVAWWLT--DAPIIGITGSNGKTTTTTLIGKLLEAAGRKTIVAGNIGRP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
L++AA A V E+SS+Q++ F P +SV+ N+ HL+ H M +
Sbjct: 151 LTDAAREAGA-------DSWLVAELSSFQLK-GTSAFRPRISVLTNVAETHLDYHGGMDD 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF------PG 187
Y +K LF++ + ++ + + +G R + G F P
Sbjct: 203 YTASKAKLFANQTEEDIAVVNWDDPECRRLAEGIRARIVPFAIRQRLEEGVFVDPPYPPS 262
Query: 188 VKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ D ++T V G VS + + + + GRHN NAA AA + L GV EAL
Sbjct: 263 PEDDGASRTI---VRRTGGVSTAIIAVDELGIPGRHNAANAAAAAAAA--LAAGVPAEAL 317
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKF 305
+ + R HR++ V R+ G+ + + SK TN AT + +KG V+L GG +
Sbjct: 318 AAPLRAFRGVEHRLEFV-REKAGIRFYNSSKDTNPTATTMAIRSVKG-PVVLLAGGLDRG 375
Query: 306 GYSGVLI------WKTLVNNGLSIPCFA--------------------VANMKDAVNHAR 339
L+ K LV G + A A ++ AV A
Sbjct: 376 SDYAELVPVLREKVKALVAIGETRRKLAEAAEAAGIRHIRVVEPEASPEATLERAVREAD 435
Query: 340 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+A GD ++LSP CAS+D F+++E RG +F++ A
Sbjct: 436 ALAEPGDTVLLSPACASWDMFKSYEERGRIFKKAA 470
>gi|149002384|ref|ZP_01827326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP14-BS69]
gi|182683613|ref|YP_001835360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae CGSP14]
gi|237650293|ref|ZP_04524545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae CCRI 1974]
gi|237821989|ref|ZP_04597834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae CCRI 1974M2]
gi|418075803|ref|ZP_12713043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47502]
gi|418143510|ref|ZP_12780310.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13494]
gi|419457834|ref|ZP_13997778.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02254]
gi|421231465|ref|ZP_15688112.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2080076]
gi|226722948|sp|B2IN76.1|MURD_STRPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|147759699|gb|EDK66690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae SP14-BS69]
gi|182628947|gb|ACB89895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae CGSP14]
gi|353750378|gb|EHD31018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA47502]
gi|353809251|gb|EHD89511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA13494]
gi|379531707|gb|EHY96941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA02254]
gi|395596564|gb|EJG56780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae 2080076]
Length = 450
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 173/366 (47%), Gaps = 34/366 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVAQTA----SDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L VD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTL 316
V DI+GV + +DSK+TN+ AT L K V++ GG + L+ K +
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKM 375
Query: 317 VNNGLS------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364
V G S + ++ DA A +AT GD ++LSP AS+D + NFE
Sbjct: 376 VILGQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFE 435
Query: 365 HRGMVF 370
RG +F
Sbjct: 436 VRGDLF 441
>gi|120555365|ref|YP_959716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
aquaeolei VT8]
gi|158513048|sp|A1U3G0.1|MURD_MARAV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|120325214|gb|ABM19529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
aquaeolei VT8]
Length = 446
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 162/352 (46%), Gaps = 51/352 (14%)
Query: 49 TGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS 108
TG+NGK+TV T VG+M G VGGN+G P AL + + V+E+SS
Sbjct: 115 TGSNGKTTVTTLVGEMARAAGRNVQVGGNIGTP---------ALDLLEQGADLYVLELSS 165
Query: 109 YQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL-----LPF 163
+Q+E + + VLN++ DH++R+ Y K ++ N + L P
Sbjct: 166 FQLET-TEELGALAATVLNVSDDHMDRYPDKMAYFQAKQRIYRGCKNAIVNLDDALSTPM 224
Query: 164 GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G FN F + D E ++ + + + S+LQL MGRHN
Sbjct: 225 ARDTLRFLCFG--FNRVNPETF-STRDDDEGTWITWGLENLLLASELQL-----MGRHNI 276
Query: 224 HNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283
N V A LG G+ +E + R PHR + V R++ GV +++DSK TN+ AT
Sbjct: 277 SN--VMAALALGYAAGLAMEPMLEVARRFRGLPHRCESV-RNLDGVDYINDSKGTNVGAT 333
Query: 284 CTGLMDL--KGHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGL 321
+ L + K +++ GG K G I + + G
Sbjct: 334 VAAIESLVPESGKVILIAGGDGKGADFQPLAEPVAACCRALVLIGRDAGKISRAV---GA 390
Query: 322 SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
S+P ++++AV+ AR+ A GD ++LSP CASFD FR++ RG F+ L
Sbjct: 391 SVPQHRATSLQEAVSLARQAAEPGDRVLLSPACASFDMFRDYNDRGEQFRTL 442
>gi|15902647|ref|NP_358197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae R6]
gi|116515762|ref|YP_816097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
pneumoniae D39]
gi|419481711|ref|ZP_14021505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40563]
gi|421265721|ref|ZP_15716604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR27]
gi|30316022|sp|Q8DQM2.1|MURD_STRR6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|122279017|sp|Q04LK1.1|MURD_STRP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
AltName: Full=D-glutamic acid-adding enzyme; AltName:
Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase
gi|15458185|gb|AAK99407.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
pneumoniae R6]
gi|116076338|gb|ABJ54058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae D39]
gi|379581390|gb|EHZ46275.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae GA40563]
gi|395868457|gb|EJG79574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
pneumoniae SPAR27]
Length = 450
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 172/360 (47%), Gaps = 34/360 (9%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P S+ A
Sbjct: 99 VLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYPASQVA- 155
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ S K V+E+SS+Q+ + + F P ++V+ NL P H++ H + Y K
Sbjct: 156 ---QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKW 208
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVV 207
++ + M +L F NQ L + + A + F ++ A ++ G V
Sbjct: 209 NIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQLYFRGEV 265
Query: 208 SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267
+ + + V G HN N A+A ++V L VD + + T+ HR+Q V DI+
Sbjct: 266 V-MAANEIGVPGSHNVEN-ALATIAVAKLR-DVDNQTIKETLSAFGGVKHRLQFVD-DIK 321
Query: 268 GVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLI-----WKTLVNNGLS 322
GV + +DSK+TN+ AT L K V++ GG + L+ K +V G S
Sbjct: 322 GVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDRGNEFDELVPDITGLKKMVILGQS 381
Query: 323 ------------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVF 370
+ ++ DA A +AT GD ++LSP AS+D + NFE RG +F
Sbjct: 382 AERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLLSPANASWDMYANFEVRGDLF 441
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,827,873,917
Number of Sequences: 23463169
Number of extensions: 230569511
Number of successful extensions: 542458
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4132
Number of HSP's successfully gapped in prelim test: 7561
Number of HSP's that attempted gapping in prelim test: 518380
Number of HSP's gapped (non-prelim): 15327
length of query: 377
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 233
effective length of database: 8,980,499,031
effective search space: 2092456274223
effective search space used: 2092456274223
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 78 (34.7 bits)