BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017087
(377 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B8FBS0|MURD_DESAA UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Desulfatibacillum alkenivorans (strain AK-01) GN=murD
PE=3 SV=1
Length = 450
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 192/378 (50%), Gaps = 46/378 (12%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L + G V+ E++ A++ I I+AVTGTNGK+TV + +G+M+ GI AFVGGN
Sbjct: 85 LEAAREKGVPVIGEVELASRFI--QAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+GNPL + + K QV V E+SS+Q++ + F P V+++ N+T DH++R+
Sbjct: 143 IGNPL-------VNYAKGEDKAQVVVAEISSFQLDTI-ESFAPKVALLTNVTEDHMDRYD 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M+ YA +K +F + +L G + A+ G W F G + + EA A
Sbjct: 195 GMEGYAASKARVFMNQTGADFAILN-GCDKWSRAMCGGIKASQWF--FTG-REEAEAGIA 250
Query: 198 SFEVPAVGVVSQLQLH------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A+ + Q H M + G HN NAA AAL+ VE + I+
Sbjct: 251 -MNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAG--ASVEGIQGAIDA 307
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI--LLGGQAKFGY-- 307
+ PHR++ V R++ V + DDSKATN++A L L+G + ++GG+ K G+
Sbjct: 308 FKGLPHRLEFV-REVMDVKYYDDSKATNVDAV---LRALEGFNAPVHLIMGGRDKGGHFR 363
Query: 308 --------SGVLIWKTLVNNGL-------SIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
++ T G+ S+ ++ AV A+R A G+ +VLSP
Sbjct: 364 DLKDMVEQKAARLYVTGEAAGIITSALSGSVEVVQAGTIEKAVEFAKRAARPGEVVVLSP 423
Query: 353 GCASFDEFRNFEHRGMVF 370
GCASFD+++N++ RG F
Sbjct: 424 GCASFDQYKNYKERGKDF 441
>sp|Q2IG29|MURD_ANADE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Anaeromyxobacter
dehalogenans (strain 2CP-C) GN=murD PE=3 SV=1
Length = 462
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 187/388 (48%), Gaps = 52/388 (13%)
Query: 22 LQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQML-NHLGIEAFVGG 76
+Q+ +R V E++ AA+ + + I+ +TGTNGKST G +L H FVGG
Sbjct: 87 IQAARRRGVPVWGEVELAARFL-GGLPIVGITGTNGKSTTTALTGALLARHR--RTFVGG 143
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
NLG PLSE S +P AVVE+SS+Q+E + F V+ VLN+TPDHL+R+
Sbjct: 144 NLGTPLSELVL------SGEPA-AAAVVELSSFQLEGIER-FRARVAAVLNVTPDHLDRY 195
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKIDTE 193
+ YA K LF+ + + + + A +G + P D
Sbjct: 196 PDVDAYAAAKARLFATQEPDDVAVANARDPRALAMAGASRGDLHTFGFGAPVPASARDEG 255
Query: 194 AK-----TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ TA + P + QLHN + GRHN NA A L +GV EA+ +
Sbjct: 256 GEPGPGGTAIWYTPRGRAPERYQLHNRALRGRHNRENAMAAVLCAR--LMGVPGEAVQAG 313
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAK-- 304
++ HR+++V + +GV WV+DSKATN+++T GL + V+++GG+ K
Sbjct: 314 LDAFPGLHHRLELVA-EGRGVEWVNDSKATNVDSTFVGLAAFPAGAPRVVLIMGGRGKKA 372
Query: 305 ------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGD 346
G I + L + + PC ++ AV A ++ GD
Sbjct: 373 PYAPLRPLFGGRVKALLTIGEDAPAIERELGDLAPTEPC---GDLPGAVRRAAVLSGPGD 429
Query: 347 AIVLSPGCASFDEFRNFEHRGMVFQELA 374
++LSP CAS+D+F ++E RG F+ LA
Sbjct: 430 VVLLSPACASYDQFASYEERGEAFRRLA 457
>sp|Q6AJ52|MURD_DESPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=murD PE=3
SV=1
Length = 456
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/373 (32%), Positives = 181/373 (48%), Gaps = 36/373 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA L ++G +V+ EL AA V+ R ++A+TGTNGK+TV + VG +L G FVGGN
Sbjct: 91 LARLRRAGVQVLGELALAAPVLDR--PVVAITGTNGKTTVTSLVGDLLRASGKRVFVGGN 148
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + L SS + V V+EVSS+Q+E+ F P ++++LNL+PDHL+RH
Sbjct: 149 IGVPL-------LDLLSSGDEVDVIVLEVSSFQLELAGD-FSPHIALLLNLSPDHLDRHG 200
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
+ Y K HLF T + ++ G+ L G ++ F D
Sbjct: 201 DLAGYRAAKMHLFQKQGMTDIAIVS-GDDPLCLLSDGCGEASRYLFGFSAAS-DISVAAG 258
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILRTPP 256
FE G L + + R + NAA AA L D+E I
Sbjct: 259 HFEFDFAGQREIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIE---RGIAAFTLDA 315
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIW--- 313
HRM+ V I GV + +DSKATN A + L L + +++ GG+ K +L
Sbjct: 316 HRMEPVA-SIAGVQYYNDSKATNTGAVISALQQLV--RVILIAGGRDKGDNYRLLREAVA 372
Query: 314 ---KTLVNNGLSIPCFAVA-----------NMKDAVNHARRMATNGDAIVLSPGCASFDE 359
+TL+ G + P A ++ +AV+ A A GD+++LSP CASFD
Sbjct: 373 GHVRTLICIGEATPLLVAALEDVVQVYRATSLAEAVSLAASFAEEGDSVLLSPACASFDM 432
Query: 360 FRNFEHRGMVFQE 372
F N++ RG F+
Sbjct: 433 FANYQDRGEQFRR 445
>sp|Q1IKG8|MURD_KORVE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Koribacter
versatilis (strain Ellin345) GN=murD PE=3 SV=1
Length = 453
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/370 (30%), Positives = 182/370 (49%), Gaps = 35/370 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ AAQ +P + +A+TG+NGK+T + G +L G + VGGN+G P
Sbjct: 90 KQGIPVIGEIELAAQFVPGHV--IAITGSNGKTTTTSLCGDILQSGGKKTLVGGNIGTP- 146
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I+ +V+E+SS+Q+E + F P ++ +LN+TPDHL+RH T + Y
Sbjct: 147 ------AISFAQLANDDTWSVLEISSFQLETIER-FRPEIAAILNITPDHLDRHGTFEKY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS--FE 200
A K +F + +L N+ E K + + W VK T + F
Sbjct: 200 AAAKERIFENQREHDFAILNADNEPCVEIAKRVKSQVLWFSRQHEVKHGTFVREDKIYFR 259
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
P G + + +M + G HN N V A +G+ V E + + + HR++
Sbjct: 260 DPK-GEREIMPVADMLLKGAHNVEN--VLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAKFGYSGVL------IW 313
++GV + +DSKATN++AT L KG ++LGG+ K VL
Sbjct: 317 YTA-TVKGVDYYNDSKATNVDATIKALESFSKG--VHLILGGKDKGSPYTVLNDLLHERA 373
Query: 314 KTLVNNGLS----------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
KT+ G + + +++AV A + A GD ++L+P CASFD+F+++
Sbjct: 374 KTVYTIGAAAAKIEAEVKGVEVVHAETLENAVKLASQKAVKGDVVLLAPACASFDQFQSY 433
Query: 364 EHRGMVFQEL 373
EHRG +F+EL
Sbjct: 434 EHRGRIFKEL 443
>sp|A8ZXW5|MURD_DESOH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=murD PE=3 SV=1
Length = 459
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 186/375 (49%), Gaps = 50/375 (13%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G VM E++ AA+ + + + AVTGTNGK+TV T +G ML G + FVGGN+G PL
Sbjct: 93 EKGIPVMGEMELAARFVTKPVA--AVTGTNGKTTVTTLLGDMLKASGRQVFVGGNIGAPL 150
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I +AVVEVSS+Q++ ++ F P V+V+LN+ DHL R+ Y
Sbjct: 151 -------IGFADKGENADMAVVEVSSFQLDT-SETFRPHVAVLLNIAEDHLARYVDFNAY 202
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDT--EAK 195
+K +F + + ++ + H+ +A KG R FN V DT E
Sbjct: 203 VRSKGRIFENQEADDVAVINGADFHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIV 262
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
TA + + V S L + RHN N +AA ++ L +G VE + + ++ +
Sbjct: 263 TAGTKTATISVTSPL------MRARHNMEN--IAAATLAALAMGATVEGIQAAVDGFQGL 314
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKT 315
HR++ V I V + DDSKATN +A L + + V+LLGG+ K GVL K
Sbjct: 315 RHRLEYVA-SIDDVHYFDDSKATNPDAVRRAL-EFFTSRVVLLLGGEDKGCDYGVL--KN 370
Query: 316 LVN--------------------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
++ NG S+ + +M +AV A +A GDA++LSP C+
Sbjct: 371 VIRERARAVVLFGAAKEKIRMAING-SVSLWDAGSMAEAVRRAHELAAPGDAVLLSPACS 429
Query: 356 SFDEFRNFEHRGMVF 370
SFD + ++ HRG F
Sbjct: 430 SFDSYESYAHRGDDF 444
>sp|Q7V0A5|MURD_PROMP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4) GN=murD
PE=3 SV=1
Length = 473
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/385 (28%), Positives = 184/385 (47%), Gaps = 48/385 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+ E++ A + + ++I + +TGTNGK+TV + +L + A GN+G
Sbjct: 99 LKERGIVVIGEINIAWESL-KNINWIGITGTNGKTTVTHLLSHILRENNLFAPFAGNIGT 157
Query: 81 PLSEAAFHCIALPSSKPK-FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
PL E A+ S+K K V E+SS+Q+EI P + + TPDHL+RHKT+
Sbjct: 158 PLCEIAY------STKSKNIDWIVAELSSFQIEIATHCIKPKIGIWTTFTPDHLDRHKTL 211
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
NY K L ++ + + +Q+L E K N WI P V +++ +
Sbjct: 212 DNYFKIKNSLLKQ---SEFRIYNYDDQYLKENFKS-LLNGIWITTNPNV---SDSDHCDY 264
Query: 200 EVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + + L L N K+ G HN N +A + IG+ E + + +
Sbjct: 265 WINNENFIVERREKLLSLKNFKLKGNHNTQNLLLAVAA--ARKIGLSTERIKNALLSYEQ 322
Query: 255 PPHRMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
PHRM+ I RD + ++DSKATN +++ G+ +KG +I+ GG+ K
Sbjct: 323 LPHRMETIFQRDELEI--INDSKATNFDSSVAGINAIKGSP-IIISGGRLKNGDSIEWVK 379
Query: 305 -----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATN--GDAIVLS 351
FG S + K ++ G ++ + +N+A N + ++ S
Sbjct: 380 IINKKAKAVFLFGESSQTLKKLILEGGFKNDILTFNDLSEVINYAYSYIKNNQSETLLFS 439
Query: 352 PGCASFDEFRNFEHRGMVFQELAFS 376
P C+SFD+FR++E RG +F++L +
Sbjct: 440 PSCSSFDQFRDYEQRGDIFKKLIYE 464
>sp|Q5X1S4|MURD_LEGPA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella
pneumophila (strain Paris) GN=murD PE=3 SV=1
Length = 447
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 187/386 (48%), Gaps = 70/386 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P T+ K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQTDIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAK-------------FGYSGVLIWKTL--VNNGLS--IPCFAVANMKDAVNHARRMATN 344
Q K F S VLI + + + L+ +P ++++ AV A+ A
Sbjct: 355 QGKGADFQELAQPVSEFVRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKP 414
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVF 370
GD ++LSP CAS D FR+F HRG VF
Sbjct: 415 GDVVLLSPACASLDMFRDFNHRGDVF 440
>sp|Q5ZSA3|MURD_LEGPH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=murD PE=3 SV=1
Length = 447
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 186/386 (48%), Gaps = 70/386 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAK-------------FGYSGVLIWKTL--VNNGLS--IPCFAVANMKDAVNHARRMATN 344
Q K F S VLI + + + L+ +P ++++ AV A+ A
Sbjct: 355 QGKGADFQELAQPVSEFVRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKP 414
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVF 370
GD ++LSP CAS D FR+F HRG VF
Sbjct: 415 GDVVLLSPACASLDMFRDFNHRGDVF 440
>sp|Q5WTI5|MURD_LEGPL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella
pneumophila (strain Lens) GN=murD PE=3 SV=1
Length = 447
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 186/386 (48%), Gaps = 70/386 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGALIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAVG---VVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++G ++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAK-------------FGYSGVLIWKTL--VNNGLS--IPCFAVANMKDAVNHARRMATN 344
Q K F S VLI + + + L+ +P ++++ AV A+ A
Sbjct: 355 QGKGADFQELAQPVSEFVRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKP 414
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVF 370
GD ++LSP CAS D FR+F HRG VF
Sbjct: 415 GDVVLLSPACASLDMFRDFNHRGDVF 440
>sp|C1F460|MURD_ACIC5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Acidobacterium
capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
GN=murD PE=3 SV=1
Length = 461
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 184/380 (48%), Gaps = 50/380 (13%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ AA+ + K LA+TG+NGK+T + G +L VGGN+G P+
Sbjct: 92 GLPIIGEVELAARFLKG--KTLAITGSNGKTTTTSLCGAILERAHQHVQVGGNIGLPV-- 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
IAL +V+E+SS+Q+E + F P ++V+LN+TPDHL+RH + +NY
Sbjct: 148 -----IALVDDSRDDGWSVLEISSFQLETTER-FRPGIAVILNITPDHLDRHGSFENYVA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF--PGVKIDTEA 194
K +F+ + +L + + A + W GAF G + A
Sbjct: 202 AKERIFAAQTHDDALILNADDDAASRAAARASSRIFWFSRNRVIRQGAFVHEGNILFRAA 261
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEIL 252
+ A+ E L L + + G HN N AAV A + GV EA+ +
Sbjct: 262 EDAATE-------PILPLSEIPLKGAHNVENVLAAVCAARL----AGVSAEAIRDAVRDF 310
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG------------ 300
R HR++ V +I GV++ +DSKATN++A + G +IL G
Sbjct: 311 RAVEHRLEFVA-EIGGVSFYNDSKATNVDAARKAIEAFPGGIHLILGGKDKNSDYRTLRP 369
Query: 301 ---GQAKFGYS-GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356
G+ K Y+ G K + + ++P A + AVN A A+ GD ++L+P C+S
Sbjct: 370 LMAGRVKAVYTIGSAAEKIMTHLDGAVPLIAAGTLDLAVNLAGGAASPGDVVLLAPACSS 429
Query: 357 FDEFRNFEHRGMVFQELAFS 376
FD+F N+E RG VF++L +
Sbjct: 430 FDQFENYEQRGQVFKDLVLA 449
>sp|A0Q5C2|MURD_FRATN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Francisella
tularensis subsp. novicida (strain U112) GN=murD PE=3
SV=1
Length = 417
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 115/370 (31%), Positives = 176/370 (47%), Gaps = 63/370 (17%)
Query: 27 RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+++S++D Q I + K +AVTG+NGKSTVVT +L LG ++ + GN+G P
Sbjct: 80 KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
AL KF VVEVSS+Q+++ N C + ++N++PDHL+R++ + Y
Sbjct: 136 -----ALNKIGEKFDYCVVEVSSFQIDLFN---CVRFDLGCIINVSPDHLDRYQNFEQYK 187
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+KL L F N + H + + G + ++ +
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQIIRGAIYRNSTKL---- 230
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
L + K+ G HN N V L LGLDI +A++S I+ + HR +I
Sbjct: 231 ------LDIAETKLFGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAKFGYSGVLIW------- 313
V + + G T+++DSK TN+ AT L + K +I LLGG AK G ++I
Sbjct: 281 VKK-VNGTTYINDSKGTNVGATIAALNSITNSKNIILLLGGVAKGGDFSLMIKSLDKYVK 339
Query: 314 --------KTLVNNGLSIPCFA--VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363
K + + + C NMK A A + A + + ++LSP CASFDEF +
Sbjct: 340 YVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEIVLLSPACASFDEFSGY 399
Query: 364 EHRGMVFQEL 373
RG VFQ L
Sbjct: 400 AQRGEVFQNL 409
>sp|Q8R9G4|MURD_THETN UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=murD PE=3 SV=1
Length = 450
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 193/385 (50%), Gaps = 70/385 (18%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ A ++ I A+TGTNGK+T + +G+M + G + +V GN+G PL
Sbjct: 92 GLEILGEVELAYRL--SKAPIYAITGTNGKTTTTSLLGEMFRNAGRKVYVAGNIGYPLIY 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA A P+ V E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NYA
Sbjct: 150 AALE--AGPNDH-----IVAEISSFQLETV-KEFRPKISCIINITPDHLDRHKTFENYAN 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + + + W G+K +AK F V
Sbjct: 202 IKGRIFENQREEEYVVLNYDDP------------VTW-----GLKERAKAKVFPFSRKKV 244
Query: 205 ----GVVSQ--LQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
V + L L N KV+ G HN NA +AA SV L G++V+A+ +T+
Sbjct: 245 LENGAYVKEGFLYLQNKKVIKVEDIYIPGEHNLENA-LAASSVAYLS-GIEVDAIETTLR 302
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------ 304
+ HR++ V +I+G+ + +DSK TN +A+ + LK V++ GG K
Sbjct: 303 TFKGVEHRIEFVA-EIEGIKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDKGSEFDE 360
Query: 305 --------------FGYSGVLIWKTLVNNGLSIP---CFAVANMKDAVNHARRMATNGDA 347
G + I KT + S P F V ++++AV A +A GD+
Sbjct: 361 FVKTFDKKVRKLILIGQTAQKIKKTALK--YSYPEEDIFLVDSLEEAVRKAYEVAEKGDS 418
Query: 348 IVLSPGCASFDEFRNFEHRGMVFQE 372
++LSP CAS+D F+NFE RG F++
Sbjct: 419 VLLSPACASWDMFKNFEERGKAFKK 443
>sp|A2BY75|MURD_PROM5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus
marinus (strain MIT 9515) GN=murD PE=3 SV=1
Length = 477
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 181/385 (47%), Gaps = 54/385 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+ E++ A + + ++I + +TGTNGK+TV + +L + A GN+G
Sbjct: 99 LKEKGIEVLGEVNIAWESL-KNINWIGITGTNGKTTVTHLLSHILRTNNLLAPFAGNIGT 157
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PL + A+ ++ S + VA E+SSYQ+EI P + + T DHL+RHKT+
Sbjct: 158 PLCKIAY---SIKSKNIDWLVA--ELSSYQIEIATLCIKPKIGIWTTFTADHLDRHKTLD 212
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
NY K L ++ + + + HL E K G+ I T +K + +
Sbjct: 213 NYFKIKNSLLKQ---SEFRIYNYDDIHLRENFKSLS---------KGIWITTSSKQSDLD 260
Query: 201 VPAVGVVSQ----------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
+ ++ L L N K+ G HN N +A + IG+ E + + +
Sbjct: 261 HCDYWINNEDFIVERQENLLSLKNFKLKGNHNTQNLLLAIAA--ARKIGLSPEKIKNALL 318
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------ 304
PHRM+ +++ + ++DSKATN +++ G+ +KG +I+ GG+ K
Sbjct: 319 SYEQLPHRMETIYQS-NKLEIINDSKATNFDSSTAGIKAIKGAP-IIISGGKLKSGSYIE 376
Query: 305 --------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG--DAI 348
FG S + K ++ G F ++ + +N+ N + +
Sbjct: 377 WVNIINKKAKAVFLFGESSQTLKKLILEGGFKKDIFIFNDLSEVINYVYSYIENNQIETL 436
Query: 349 VLSPGCASFDEFRNFEHRGMVFQEL 373
+ SP C+SFD+FRN+E RG +F++L
Sbjct: 437 LFSPSCSSFDQFRNYEERGDIFKKL 461
>sp|Q2RK81|MURD_MOOTA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Moorella
thermoacetica (strain ATCC 39073) GN=murD PE=3 SV=1
Length = 455
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 184/380 (48%), Gaps = 35/380 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA G V SEL+ A +++P +K++A+TGTNGK+T + G++L G A VGGN
Sbjct: 83 LARARARGIPVWSELELAYRLLPPGVKVVAITGTNGKTTTTSLCGRILQEAGWPAVVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + IA P S V EVSS+Q+E F P V+ +LN+TPDHL+RH
Sbjct: 143 IGIPLVK-ELQEIA-PGS-----YVVCEVSSFQLEAITS-FHPQVAAILNITPDHLDRHG 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAK 195
+++NY K + ++ +L + + H G R + + P + E
Sbjct: 195 SLENYIAAKARVMAYQEARDFAILNYDDPHTRSLAGGARSRVLFFSRRERPPLGAWLEDG 254
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
++ A G V + + G HN N+ AAL L +GVD E L T++
Sbjct: 255 VICCDLGAGGTVKLCHCEELSLKGSHNLENSMAAALVA--LALGVDPEQLTRTLKTFPAV 312
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------- 304
PHR++ V +I GV +++DSK TN EAT + + + V++ GG+ K
Sbjct: 313 PHRLEPVA-EINGVCYINDSKGTNPEATMKAI-NAYSNPLVLIAGGRNKGSDFTLLAQQM 370
Query: 305 ---------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355
G + + + G+ + + AV A A GD ++LSP CA
Sbjct: 371 AGRVKHLVLVGEAARELEQAARKAGID-SIYLAPDFASAVREAAGAARPGDIVMLSPACA 429
Query: 356 SFDEFRNFEHRGMVFQELAF 375
S+D F+N+E RG VF+ L
Sbjct: 430 SWDMFKNYEERGDVFKSLVL 449
>sp|B0TZ72|MURD_FRAP2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Francisella
philomiragia subsp. philomiragia (strain ATCC 25017)
GN=murD PE=3 SV=1
Length = 414
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 177/367 (48%), Gaps = 55/367 (14%)
Query: 26 KRVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++++S++D Q I + K++AVTG+NGKST+VT + +L +G ++ + GN+G P
Sbjct: 79 QKIVSDIDLFYQSIRNTKAKMIAVTGSNGKSTIVTMLDFVLRDMGYKSILVGNIGTP--- 135
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L KF VVEVSS+Q+++ N + V+N++ DHL+R+K + Y
Sbjct: 136 ------PLNKIGEKFDYCVVEVSSFQIDLFNSVEFD-LGCVVNVSLDHLDRYKNYEEYK- 187
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+KL L F + H + + G + V+ T
Sbjct: 188 ----------QSKLNLAKFSKDFFVYDV--HNTGIKYAGEYQIVRGSIYKDTTKL----- 230
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
L + + G HN N V L++ G+D+ + I+ + HR +IV +
Sbjct: 231 -----LDITETNLFGEHNLENIIVV-LNIFDR-FGIDISKAVAAIKKFKGLKHRCEIV-K 282
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKFG------------YSGVL 311
+I GVT+++DSK TN+ AT L + K +ILL GG AK G V
Sbjct: 283 NIAGVTYINDSKGTNVGATIAALNSITSSKNIILLLGGVAKGGDFSLMSKSLAKYVKYVY 342
Query: 312 IW---KTLVNNGLSIPC-FAVAN-MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
++ K + N + C + + N MKDA A + A + + ++LSP CASFDEF + R
Sbjct: 343 LYGQDKEYIENYIKDMCRYQICNDMKDAFRLASQKAQDSEIVLLSPACASFDEFSGYAER 402
Query: 367 GMVFQEL 373
G VF++L
Sbjct: 403 GEVFEKL 409
>sp|P45063|MURD_HAEIN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=murD PE=3 SV=1
Length = 437
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 187/404 (46%), Gaps = 66/404 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVAN 330
K +LLGG K FG G L+ K S +
Sbjct: 336 IEGKLHLLLGGDGKGADFSELAELINQPHIICYCFGRDGALLAK------FSSQSYLFDT 389
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 390 MEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>sp|A6TS63|MURD_ALKMQ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Alkaliphilus
metalliredigens (strain QYMF) GN=murD PE=3 SV=1
Length = 455
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 194/394 (49%), Gaps = 60/394 (15%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
Q+KA G+ ++ E++ A + + R KI+A+TGTNGK+T G++ G
Sbjct: 89 QIKAQGI--------EIIGEVELAFR-LSRG-KIVAITGTNGKTTTTALTGEIFKGAGKN 138
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
+V GN+G P E A + V V+EVSS+Q+E K F P V +LNLTPD
Sbjct: 139 TYVVGNIGVPFIEKALDT-------TEEDVIVIEVSSFQLE-SIKEFHPKVGTLLNLTPD 190
Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--------HRFNLAWIG 183
HL RHKT++NY K +LF + +L + + EA K R + G
Sbjct: 191 HLNRHKTIENYREAKLNLFMNQSLQDYAVLNYDDITSREAGKTLAAQKIYFSRKQILEEG 250
Query: 184 AFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
F ++ T + K ++V + + +K++G+HN NA A + + +GV
Sbjct: 251 VFVDNQLITIQTKEKRYDV--------IHIDEIKILGQHNLENALAA--TAMTFILGVSA 300
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302
E + + HR++ V +I+GV +++DSK TN +A+ + + ++L GGQ
Sbjct: 301 EDIAKGLRNFPGVAHRLEFVE-EIEGVKYINDSKGTNTDASIKAIEAAQA-PIILLAGGQ 358
Query: 303 AK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 342
K +G + I++T ++N + V ++++AV A+ +A
Sbjct: 359 DKGGDFTDFVKAFDGKVKHLLVYGETSDNIYETALHNNFKVVS-QVRDLEEAVIRAKGIA 417
Query: 343 TNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
GD I+LSP CAS+D + NFE RG F++L S
Sbjct: 418 QAGDTILLSPACASWDMYPNFEARGQHFKKLVSS 451
>sp|A5N4L3|MURD_CLOK5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
GN=murD PE=3 SV=1
Length = 458
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 187/380 (49%), Gaps = 53/380 (13%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ + P KI VTG++GK+T T + +L G ++++GGN+G PL
Sbjct: 99 EKGAYITSEMEEFIRYCP--AKIYGVTGSDGKTTTTTLMYNILKKQGYKSWIGGNIGTPL 156
Query: 83 -SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE + P +V V+E+SS+Q+ N P V+V+ N++P+HL+ HK M+
Sbjct: 157 FSE-------VEEITPDDRV-VIELSSFQLMTMN--ISPEVAVITNVSPNHLDIHKDMEE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y + K ++F + N+ L +L N+ L ++ G L + F + + + +
Sbjct: 207 YIMAKKNIFKYQSNSDLLVLNKDNE-LTNSMTGEA--LGKVRQFSIKEKLNKGGYLNKDS 263
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ +L +K+ G HN N +AA L D V++E++ HR +
Sbjct: 264 LCIDGDEVCKLSEIKLKGMHNVENL-LAAFCALKDD--VNIESMREIATTFSGVEHRCEF 320
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------AKFGYSGVL 311
V R+I GV + +DS A++ T GL K VIL+ G A+ GYS +
Sbjct: 321 V-REINGVKYYNDSIASSPTRTLAGLKAF--EKPVILIAGGYDKKIPFDILAEEGYSKI- 376
Query: 312 IWKTLVNNGLS------------------IPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
KTLV G + IP ++ +AVN AR+++ GD + LSP
Sbjct: 377 --KTLVLMGATKYKIKEAFENLELKKHVHIPIIMANSLVEAVNSARKVSCRGDVVTLSPA 434
Query: 354 CASFDEFRNFEHRGMVFQEL 373
CASFD F NFE RG +F+E+
Sbjct: 435 CASFDMFANFEIRGNMFKEI 454
>sp|B9DY75|MURD_CLOK1 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
kluyveri (strain NBRC 12016) GN=murD PE=3 SV=1
Length = 458
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 187/380 (49%), Gaps = 53/380 (13%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G + SE++ + P KI VTG++GK+T T + +L G ++++GGN+G PL
Sbjct: 99 EKGAYITSEMEEFIRYCP--AKIYGVTGSDGKTTTTTLMYNILKKQGYKSWIGGNIGTPL 156
Query: 83 -SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE + P +V V+E+SS+Q+ N P V+V+ N++P+HL+ HK M+
Sbjct: 157 FSE-------VEEITPDDRV-VIELSSFQLMTMN--ISPEVAVITNVSPNHLDIHKDMEE 206
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y + K ++F + N+ L +L N+ L ++ G L + F + + + +
Sbjct: 207 YIMAKKNIFKYQSNSDLLVLNKDNE-LTNSMTGEA--LGKVRQFSIKEKLNKGGYLNKDS 263
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ +L +K+ G HN N +AA L D V++E++ HR +
Sbjct: 264 LCIDGDEVCKLSEIKLKGMHNVENL-LAAFCALKDD--VNIESMREIATTFSGVEHRCEF 320
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ----------AKFGYSGVL 311
V R+I GV + +DS A++ T GL K VIL+ G A+ GYS +
Sbjct: 321 V-REINGVKYYNDSIASSPTRTLAGLKAF--EKPVILIAGGYDKKIPFDILAEEGYSKI- 376
Query: 312 IWKTLVNNGLS------------------IPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
KTLV G + IP ++ +AVN AR+++ GD + LSP
Sbjct: 377 --KTLVLMGATKYKIKEAFENLELKKHVHIPIIMANSLVEAVNSARKVSCRGDVVTLSPA 434
Query: 354 CASFDEFRNFEHRGMVFQEL 373
CASFD F NFE RG +F+E+
Sbjct: 435 CASFDMFANFEIRGNMFKEI 454
>sp|Q11RH3|MURD_CYTH3 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Cytophaga
hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=murD
PE=3 SV=1
Length = 450
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 190/389 (48%), Gaps = 49/389 (12%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + V+SE++FA + I K +A+TG+NGK+T +L LG
Sbjct: 76 KAPIMKLIRSKAIEVISEIEFAYRHIHPGAKFIAITGSNGKTTTTLLTHHILAQLGYSVG 135
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+GGN+G L+ H K V V+E+SS+Q++ + Y F V+V+LN+TPDH
Sbjct: 136 LGGNIGTSLARQIIH--------EKKDVYVLELSSFQLD--DMYTFKADVAVLLNITPDH 185
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------- 182
L+R++ +NY +K +F ++ + + + K H + ++
Sbjct: 186 LDRYEYKFENYTASKFRIFQNLTPADYYITYSEDSVIESYKKDHPVDARYVPVSLKQLYS 245
Query: 183 -GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241
GA+ ++ KT VV+ + G+HNY N +AAL+ + IG D
Sbjct: 246 AGAY------SDEKTIQIHALDDTVVT-CNTEEFPLQGKHNYIN-IMAALNA-AVSIGAD 296
Query: 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
+ ++I+ R PHR++ V I GV +V+DSKATN+++ L +K +I+ G
Sbjct: 297 IHKSIASIKSFRNAPHRLEFVGS-IYGVKFVNDSKATNVDSVWYALDSMKTPVVLIVGGV 355
Query: 302 QAKFGYSGV--LIWK---TLV----NNGLSIPCFA--------VANMKDAVNHARRMATN 344
YS + L+ + T+V +N + FA +M +A+ A A
Sbjct: 356 DKGNDYSQIEALVKEKVHTVVALGKDNSKVLSGFASMVSEIKEAHSMVEAIRIAHDSAKK 415
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
GD ++LSP CASFD F+N+E RG F+ L
Sbjct: 416 GDTVLLSPACASFDLFKNYEDRGTQFRNL 444
>sp|Q31I61|MURD_THICR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Thiomicrospira
crunogena (strain XCL-2) GN=murD PE=3 SV=1
Length = 449
Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 184/386 (47%), Gaps = 65/386 (16%)
Query: 20 CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
C+ Q G V+ +++ A+ + I +A+TG+NGKSTV T V + L G VGGN+G
Sbjct: 80 CINQ-GTEVIGDIELFARAAGKPI--VAITGSNGKSTVTTLVAEALKEAGYAVGVGGNIG 136
Query: 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS-VVLNLTPDHLERHKT 138
P A + P+ +F V V+E+SS+Q+E Y T++ VLN++ DH++R+
Sbjct: 137 CP----ALDLLTHPT---EFDVYVLELSSFQLE--TTYSLQTIAATVLNISEDHMDRYLA 187
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP----GVKIDT 192
+++Y K + + NT+L +LP + + A G RF L + A P G+ +
Sbjct: 188 LEDYIQAKMTILN---NTELAVLPLDFERVGIARPGDEVRFGLNYAEALPPKEYGIVMKN 244
Query: 193 EAKTASFE----VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+E VP + Q G H+ NA A+ L +
Sbjct: 245 GQAWLGWEDHASVPVTAMAQQ---------GLHHQLNAL--AMMALCRPFDLSDAVFEKV 293
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAK- 304
++ + PHR Q+V +GV W++DSK TN+ AT T + +K + +++ GG K
Sbjct: 294 LKTFKGLPHRTQVVLEQ-EGVRWINDSKGTNVGATVTAIESIKETLDGQVILIAGGVGKE 352
Query: 305 -------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 345
FG +I + L + + V + +AV A+ +A +G
Sbjct: 353 ADFNELGQAVVQSCRQAILFGQDKAIIAQQLPQEKIQL----VDTLSEAVLLAKTIAKSG 408
Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQ 371
DA++ SP CASFD+F+N+ RG F+
Sbjct: 409 DAVLFSPACASFDQFKNYIERGNAFE 434
>sp|Q01Q46|MURD_SOLUE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Solibacter
usitatus (strain Ellin6076) GN=murD PE=3 SV=1
Length = 442
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 174/367 (47%), Gaps = 32/367 (8%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G RV+ E++ AA + + + +TG+NGK+T + G +L G+ VGGN+G P+
Sbjct: 84 RHGVRVIGEVELAAPFL--KGRTIGITGSNGKTTTTSLTGHILREAGVPVQVGGNIGLPV 141
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ A+ S V+E+SS+Q+E ++ F + + LN+T +HL+RH T +NY
Sbjct: 142 T-------AMVESSRDDGWNVLELSSFQLETIHE-FRAHIGLALNVTQNHLDRHHTFENY 193
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
A K LF +L + R + W + K+D A ++
Sbjct: 194 AAIKGRLFETQQAGDYAVLNAEDPVCVAYAARTRATVQWFSSRK--KVDPGATLCGNKLV 251
Query: 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIV 262
G + ++ + + GRHN N V A ++ GV+ A+ + + R HR++ V
Sbjct: 252 LFGKL-LMEAGEIPIRGRHNIEN--VLAAAIAASRAGVEHAAIAAAVRSFRAVEHRLEFV 308
Query: 263 HRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGV------------ 310
R + GV + +DSKAT+++AT L G VIL G Y+ +
Sbjct: 309 -RKLNGVDFYNDSKATSVDATLKALDAFPGGLWVILGGKDKGLDYAALREPLTEKARAAL 367
Query: 311 ----LIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
K ++P + AV HA A GD ++L+P CASFD+F+++EHR
Sbjct: 368 LIGAAAGKIAEQIAGAVPLVDAKTLDGAVRHAFAHAAPGDTVLLAPACASFDQFKSYEHR 427
Query: 367 GMVFQEL 373
G F+++
Sbjct: 428 GETFKQI 434
>sp|A5UIR0|MURD_HAEIG UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Haemophilus
influenzae (strain PittGG) GN=murD PE=3 SV=1
Length = 437
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/404 (28%), Positives = 186/404 (46%), Gaps = 66/404 (16%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYSL 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL------PFGNQHLNEA 171
V+V LN+T DH++R+ +++Y K + N K+G+L FG NE
Sbjct: 171 KAAAVTV-LNVTEDHMDRYMDLEDYRQAKLRIHH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVAN 330
K +LLGG K FG G + K S +
Sbjct: 336 IEGKLHLLLGGDGKGADFSELAELINQPHIICYCFGRDGAQLAK------FSSQSYLFET 389
Query: 331 MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
M+ A+ R +GD ++LSP CAS D+F +FE RG F LA
Sbjct: 390 MEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEEFTHLA 433
>sp|Q7MNV3|MURD_VIBVY UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio
vulnificus (strain YJ016) GN=murD PE=3 SV=1
Length = 442
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 167/366 (45%), Gaps = 73/366 (19%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N G++ +GGN+G P AL + + ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP---------ALDLLEQEVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVN----- 155
E+SS+Q+E + LNL+ DH++R++ M +Y K +F H +VN
Sbjct: 161 ELSSFQLETTTSLHL-VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNRDDRQ 219
Query: 156 ---------TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L L+ FG+ + H+ +W+ + + AS E
Sbjct: 220 TYPETSHGQQSLALVTFGSDDKEFGVMSHQGE-SWL------SYNQQPILASRE------ 266
Query: 207 VSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+K++G+HN N V A L+ G+D + AL S + HR Q+V
Sbjct: 267 --------LKLVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGL----THRCQVV-A 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSI 323
D +G+ WV+DSKATNL +T L L K +L+GG K G + L L +
Sbjct: 314 DNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLVGGDGK-GADFSPLKPILAQLNLQL 372
Query: 324 PCFAV---------------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
CF M+D + H +GD ++LSP CASFD+F NF RG
Sbjct: 373 CCFGADGDQFMPLHASATRFERMEDVIEHISPQLQSGDMVMLSPACASFDQFSNFMARGD 432
Query: 369 VFQELA 374
F ELA
Sbjct: 433 RFAELA 438
>sp|Q8DEK8|MURD_VIBVU UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio
vulnificus (strain CMCP6) GN=murD PE=3 SV=1
Length = 442
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 168/366 (45%), Gaps = 73/366 (19%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
++A+TG+NGKSTV G M N G++ +GGN+G P AL + + ++ V+
Sbjct: 110 VIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGVP---------ALDLLEQEVELYVL 160
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVN----- 155
E+SS+Q+E + + LNL+ DH++R++ M +Y K +F H +VN
Sbjct: 161 ELSSFQLETTSSLHL-VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNRDDRQ 219
Query: 156 ---------TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
L L+ FG+ + H+ +W+ + + AS E
Sbjct: 220 TYPETSHGQQSLALVTFGSDDKEFGVISHQGE-SWL------SYNQQPILASRE------ 266
Query: 207 VSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+K++G+HN N V A L+ G+D + AL S + HR Q+V
Sbjct: 267 --------LKLVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGLT----HRCQVV-A 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSI 323
D +G+ WV+DSKATNL +T L L K +L+GG K G + L L +
Sbjct: 314 DNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLVGGDGK-GADFSPLKPILAQLNLQL 372
Query: 324 PCFAV---------------ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGM 368
CF M+D + H +GD ++LSP CASFD+F NF RG
Sbjct: 373 CCFGADGDQFMPLHASATRFERMEDVIEHISPQLQSGDMVMLSPACASFDQFSNFMARGD 432
Query: 369 VFQELA 374
F ELA
Sbjct: 433 RFAELA 438
>sp|B8D7C1|MURD_BUCAT UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)
GN=murD PE=3 SV=1
Length = 440
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 197/379 (51%), Gaps = 63/379 (16%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++S+++ ++ + + I+++TGTNGKSTV T + ++ G +AF+GGN+G P+ E
Sbjct: 90 GIEIISDIELFSREV--TCPIISITGTNGKSTVATMIEKIAKKSGYKAFLGGNIGVPVLE 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT-VSVVLNLTPDHLERHKT-MKNY 142
+ + ++E+SS+Q+E N + + ++V+LN++ DH+ R+ + Y
Sbjct: 148 IL---------DKEADLYIIELSSFQLE--NTFNLKSKIAVILNISEDHINRYPNGFQQY 196
Query: 143 ALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
TK +++ ++N+ N + +++ H N WI +F + D + S
Sbjct: 197 KNTKLSVYNQAEICIINS--------NDKIEKSLI-HSKNKKWI-SFGTNRSDYRICSKS 246
Query: 199 FEVPAVGVVSQLQLHNMKVM--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT-- 254
+ P + ++ L+ +++ G HNY+N V+ L + + N I +L++
Sbjct: 247 ND-PILFFKNKKILNTSEILLYGYHNYNNILVS----LAISDAMQFPR-NDAINVLKSFS 300
Query: 255 -PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVL- 311
PHR QI+ + +GV W++DSK+TN+ +T L +K + +LLGG +K +L
Sbjct: 301 NLPHRFQIIKNE-KGVRWINDSKSTNVNSTQVALNSIKTTGTIRLLLGGDSKSANFNILK 359
Query: 312 -IWKTLVNNGLSIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGC 354
I++TL + I CF V N+K AV + +GD ++LSPGC
Sbjct: 360 NIFRTL---KIKIYCFGRDGIKLSKICEKKSIYVENLKKAVILISKQVKSGDTVLLSPGC 416
Query: 355 ASFDEFRNFEHRGMVFQEL 373
+S D+F NFE RG +F +L
Sbjct: 417 SSLDQFSNFEERGNLFIKL 435
>sp|B8D916|MURD_BUCA5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain 5A)
GN=murD PE=3 SV=1
Length = 440
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 197/379 (51%), Gaps = 63/379 (16%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++S+++ ++ + + I+++TGTNGKSTV T + ++ G +AF+GGN+G P+ E
Sbjct: 90 GIEIISDIELFSREV--TCPIISITGTNGKSTVATMIEKIAKKSGYKAFLGGNIGVPVLE 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT-VSVVLNLTPDHLERHKT-MKNY 142
+ + ++E+SS+Q+E N + + ++V+LN++ DH+ R+ + Y
Sbjct: 148 IL---------DKEADLYIIELSSFQLE--NTFNLKSKIAVILNISEDHINRYPNGFQQY 196
Query: 143 ALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
TK +++ ++N+ N + +++ H N WI +F + D + S
Sbjct: 197 KNTKLSVYNQAEICIINS--------NDKIEKSLI-HSKNKKWI-SFGTNRSDYRICSKS 246
Query: 199 FEVPAVGVVSQLQLHNMKVM--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT-- 254
+ P + ++ L+ +++ G HNY+N V+ L + + N I +L++
Sbjct: 247 ND-PILFFKNKKILNTSEILLYGYHNYNNILVS----LAISDAMQFPR-NDAINVLKSFS 300
Query: 255 -PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVL- 311
PHR QI+ + +GV W++DSK+TN+ +T L +K + +LLGG +K +L
Sbjct: 301 NLPHRFQIIKNE-KGVRWINDSKSTNVNSTQVALNSIKTTGTIRLLLGGDSKSANFNILK 359
Query: 312 -IWKTLVNNGLSIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGC 354
I++TL + I CF V N+K AV + +GD ++LSPGC
Sbjct: 360 NIFRTL---KIKIYCFGRDGIKLSKICEKKSIYVENLKKAVILISKQVKSGDTVLLSPGC 416
Query: 355 ASFDEFRNFEHRGMVFQEL 373
+S D+F NFE RG +F +L
Sbjct: 417 SSLDQFSNFEERGNLFIKL 435
>sp|Q9KPG5|MURD_VIBCH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=murD PE=3 SV=2
Length = 440
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 186/407 (45%), Gaps = 65/407 (15%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53
W L WL + + G+A +L +G V+ +++ A + ++A+TG+NG
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV--DTPVIAITGSNG 118
Query: 54 KSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI 113
KSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 119 KSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLET 169
Query: 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQHL 168
+ + LNL+ DH++R++ M++Y K +F H +VN P HL
Sbjct: 170 TSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHL 228
Query: 169 NEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224
G +F+LA + EA A E + ++GRHN
Sbjct: 229 QVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNVA 274
Query: 225 N--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+ +
Sbjct: 275 NVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVAS 329
Query: 283 TCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV-------------- 328
T L LK + LL G G + L + + CF V
Sbjct: 330 TLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSARF 389
Query: 329 -ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 390 YDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>sp|Q6MBS4|MURD_PARUW UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Protochlamydia
amoebophila (strain UWE25) GN=murD PE=3 SV=1
Length = 444
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 176/367 (47%), Gaps = 41/367 (11%)
Query: 26 KRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
K V+ E++ + SI + VTGTNGK+TV + +LN G++A GN+G PL+
Sbjct: 96 KEVIGEIELGCRASCHSI--IGVTGTNGKTTVTLLITHILNANGLKAKALGNVGTPLTRE 153
Query: 86 AFHCIALPSSKPKFQ-VAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
FQ +AV+E+SSYQ++ + +VVLN+TPDHLER++TM+NYA
Sbjct: 154 ILTL--------DFQEIAVLELSSYQLDTFQQQVLDE-AVVLNITPDHLERYETMENYAK 204
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+K + + K G L + E F + G P T+ + E
Sbjct: 205 SKFQIGKCL--KKSGKLFVERKAAVEYQHLLNFPHSTYGYLPSCHTYTDLCSVFLEG--- 259
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ Q +L ++ G+ N+ + A + G+ + ++ + P HR++ V
Sbjct: 260 --MQQFEL-PLEWQGKENHDLENLLAAYAICARRGIKPQQFLQALKTFQKPSHRVEFV-L 315
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVL---IWKTLVNN-- 319
+ G+ + DDSK TN++A + + ++ V L+ G G S V ++K V
Sbjct: 316 EKNGIHFYDDSKGTNIDAVMRAVQSI--NRPVFLIAGGVDKGASYVAWLNVFKGHVKKVY 373
Query: 320 -------------GLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHR 366
L I AN+ DAV A + A GDA++LSPGCASFD F+++ HR
Sbjct: 374 AIGQAANKIQKELSLHIRVQIEANLDDAVKQAYQDAKEGDAVLLSPGCASFDMFKDYIHR 433
Query: 367 GMVFQEL 373
G F+ L
Sbjct: 434 GEEFKRL 440
>sp|Q3AAE4|MURD_CARHZ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=murD PE=3
SV=1
Length = 451
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 193/395 (48%), Gaps = 36/395 (9%)
Query: 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
W L + L +A L+ G V+ E++ A + + I+AVTGTNGK+T +++
Sbjct: 69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
G++L G + + GN+G PL EA + ++ +EVSS+Q+E K F P
Sbjct: 127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
V+V+LNLTPDHL+RHKT++ Y K +F + T + +L + + + + + +
Sbjct: 177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236
Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
++ K V ++GV + + + N+ + G HN NA + GV
Sbjct: 237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENALATVAACWSF--GV 294
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
+ + + + HR++ V +I GV +V+DSK TN ++T L + V++ G
Sbjct: 295 SGKNIERGLRNFQGVAHRLEKVA-EINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352
Query: 301 GQAK---FGYSGVLIWKTLVNNGLSIPC---------------FAVA-NMKDAVNHARRM 341
G+ K FG I + + L C + VA + +DAV A+ +
Sbjct: 353 GRNKGNSFGELAREIREKVRFTILVGECREELKEALEMVGYDKYVVAESFEDAVKKAKEL 412
Query: 342 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
A GD ++LSP AS+D F+N+E RG +F+ L +
Sbjct: 413 ARPGDVVLLSPAAASWDMFKNYEERGELFKRLVLN 447
>sp|Q64ZL9|MURD_BACFR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacteroides
fragilis (strain YCH46) GN=murD PE=3 SV=1
Length = 444
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 190/383 (49%), Gaps = 56/383 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGY 307
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDY 356
Query: 308 SGV----------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIV 349
+ + L++ L N + L +P V MKDAV A ++A G+ ++
Sbjct: 357 TEIEELVREKCSALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVL 416
Query: 350 LSPGCASFDEFRNFEHRGMVFQE 372
LSP CASFD F+++E RG F++
Sbjct: 417 LSPCCASFDLFKSYEDRGEQFKK 439
>sp|Q5LIJ5|MURD_BACFN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343) GN=murD PE=3
SV=1
Length = 444
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 190/383 (49%), Gaps = 56/383 (14%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-FGY 307
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K Y
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDKGNDY 356
Query: 308 SGV----------LIWKTLVN-------NGLSIPCFAV-ANMKDAVNHARRMATNGDAIV 349
+ + L++ L N + L +P V MKDAV A ++A G+ ++
Sbjct: 357 TEIEELVREKCSALVYLGLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVL 416
Query: 350 LSPGCASFDEFRNFEHRGMVFQE 372
LSP CASFD F+++E RG F++
Sbjct: 417 LSPCCASFDLFKSYEDRGEQFKK 439
>sp|A5F5N1|MURD_VIBC3 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=murD PE=3 SV=1
Length = 440
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 186/408 (45%), Gaps = 67/408 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 117
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 118 GKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 168
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M +Y K +F H +VN P H
Sbjct: 169 TTSSLKL-KAAAFLNLSEDHMDRYQGMGDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 227
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 228 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 273
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 274 TNVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 328
Query: 282 ATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV------------- 328
+T L LK + LL G G + L + + CF V
Sbjct: 329 STLAALSGLKIEGQLYLLVGGVGKGADFTPLAPVLATLPVQLCCFGVDGHQFMPLHPSAR 388
Query: 329 --ANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+M+ + R +GD ++LSP CASFD+F+NF RG +F +LA
Sbjct: 389 FYDSMESIIRSIRPQLKSGDMVLLSPACASFDQFKNFMARGDIFAQLA 436
>sp|Q0TMJ3|MURD_CLOP1 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
GN=murD PE=3 SV=1
Length = 458
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 169/360 (46%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGH--RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVM 218
N+ +L++ KG RF+ D + EV + ++ +
Sbjct: 229 ENEITKNLDKEAKGKVVRFSSKKTAGEDAYYKDGKLYVHGKEV--------CKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGVTKEKIKAAFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ VN A+ +A NGD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>sp|P57313|MURD_BUCAI UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=murD PE=3 SV=1
Length = 440
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 195/379 (51%), Gaps = 63/379 (16%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++S+++ ++ + + I+++TGTNGKSTV T + ++ G +AF+GGN+G P+ E
Sbjct: 90 GIEIISDIELFSREV--TCPIISITGTNGKSTVATMIEKIAKKSGYKAFLGGNIGVPVLE 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHKT-MKNY 142
+ + ++E+SS+Q+E N + ++V+LN++ DH+ R+ + Y
Sbjct: 148 IL---------DKEADLYIIELSSFQLE--NTFNLKSKIAVILNISEDHINRYPNGFQQY 196
Query: 143 ALTKCHLFSH----MVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS 198
TK +++ ++N+ N + +++ H N WI +F + D + S
Sbjct: 197 KNTKLSVYNQAEICIINS--------NDKIEKSLI-HSKNKKWI-SFGTNRSDYRICSKS 246
Query: 199 FEVPAVGVVSQLQLHNMKVM--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT-- 254
+ P + ++ L+ +++ G HNY+N V+ L + + N I +L++
Sbjct: 247 ND-PILFFKNKKILNTSEILLYGYHNYNNILVS----LAISDAMQFPR-NDAINVLKSFS 300
Query: 255 -PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVL- 311
PHR QI+ + +GV W++DSK+TN+ +T L +K + +LLGG +K +L
Sbjct: 301 NLPHRFQIIKNE-KGVRWINDSKSTNVNSTQVALNSIKTTGTIRLLLGGDSKSANFNILK 359
Query: 312 -IWKTLVNNGLSIPCFA----------------VANMKDAVNHARRMATNGDAIVLSPGC 354
I++TL + I CF V N+K AV + +GD ++LSPGC
Sbjct: 360 NIFRTL---KIKIYCFGRDGIKLSKICEKKSIYVENLKKAVILISKQVKSGDTVLLSPGC 416
Query: 355 ASFDEFRNFEHRGMVFQEL 373
+S +F NFE RG +F +L
Sbjct: 417 SSLGQFSNFEERGNLFIKL 435
>sp|Q8XHM4|MURD_CLOPE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
perfringens (strain 13 / Type A) GN=murD PE=3 SV=1
Length = 458
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 174/360 (48%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 RVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + N+ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDNIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKVAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGVTKEKIKAAFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ VN A+ +A +GD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVNIAKSIAESGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>sp|Q0AJD9|MURD_NITEC UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Nitrosomonas
eutropha (strain C91) GN=murD PE=3 SV=1
Length = 470
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 178/373 (47%), Gaps = 33/373 (8%)
Query: 22 LQSGKRVMSELDFAA----QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LQ G V+ +++ A Q P KILA+TG+NGK+TV T VG+M + G + V GN
Sbjct: 88 LQQGVSVIGDIELFAIALDQHAPPGTKILAITGSNGKTTVATMVGEMARNTGWDVEVAGN 147
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +A I + + V+E+SS+Q+E + P +VVLNL+ DHL+R++
Sbjct: 148 IGLAALDALMQRI---DTGKWPHLWVLELSSFQLETTSS-LRPNAAVVLNLSEDHLDRYR 203
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
++ YA K +F N+ + +L + + + L + + P + +
Sbjct: 204 IIEEYAAAKARIFPDPHNSCVQVLNREDARVYAMAHENSKQLTFGLSAPAFDDEFGVLPS 263
Query: 198 SFEV-PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
++ A G +++ + V G HN NA A +D+ E L + I + P
Sbjct: 264 GSDLWLAQGTTRLMKVSELAVAGLHNAANALAALALCRAIDL--PFEPLLHALHIFKGLP 321
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYS-------- 308
HRMQ + + GVT+ DDSK+TN+ + L + K VIL+ G G
Sbjct: 322 HRMQKI-AEFNGVTFYDDSKSTNVGSAVAALNGFR--KNVILIAGGDGKGQDFSPLEQPV 378
Query: 309 -----GVLIWKTLVN------NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357
GV++ G ++P VA M +AV + +A GD+++LSP CAS
Sbjct: 379 SKHTRGVVLLGRDAEKISQAIQGCNVPVHRVATMDEAVRVSFLLAERGDSVLLSPACASL 438
Query: 358 DEFRNFEHRGMVF 370
D F N+ HR VF
Sbjct: 439 DMFNNYIHRAEVF 451
>sp|Q0SQ91|MURD_CLOPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
perfringens (strain SM101 / Type A) GN=murD PE=3 SV=1
Length = 458
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 174/360 (48%), Gaps = 53/360 (14%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
K+ VTG++GK+T T V ++L+ G + + GGN+G PL F I + K V
Sbjct: 118 KVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTGGNIGTPL----FSNIEEIKEEDK---VV 170
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
+E+SS+Q+ + V++V N+TP+HL+ HK M+ Y K ++F + L ++
Sbjct: 171 LELSSFQLMTMDVEI--DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQRENDLLVIND 228
Query: 164 GNQ---HLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ--LQLHNMKVM 218
N+ +L++ KG + F K TE + A ++ + V + + ++ +
Sbjct: 229 ENEITKNLDKEAKGK------VVRFSSKK--TEGEDAYYKDGKLYVHGKEVCKKDDIIIK 280
Query: 219 GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKAT 278
G HN N A L+V V +E++ E HR + + R++ GV + +DS A+
Sbjct: 281 GMHNVENYLAAFLAVYD---EVSIESMKKIAETFGGVHHRCEFI-REVDGVKYYNDSIAS 336
Query: 279 NLEATCTGLMDLKGHKCVILL-GGQAK------FGYSGVLIWKTLV-------------- 317
T GL K VILL GG K Y G K +V
Sbjct: 337 TPTRTLAGLKAF--EKPVILLAGGYDKHVPFEPLAYEGYEKIKAIVLFGVTKEKIKAAFK 394
Query: 318 ----NNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
G+ +P ++ ++++ V+ A+ +A NGD I LSP CASFD F+NFE RG F+E+
Sbjct: 395 RLEEEKGIHVPVYSGESLEEVVSIAKSIAENGDIITLSPACASFDMFKNFEVRGDKFKEI 454
>sp|C4Z534|MURD_EUBE2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Eubacterium
eligens (strain ATCC 27750 / VPI C15-48) GN=murD PE=3
SV=1
Length = 450
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 174/354 (49%), Gaps = 40/354 (11%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+A+TGTNGK+T VGQ++ + FV GN+GN ++ L +S+ + VA
Sbjct: 109 KIIAITGTNGKTTTTALVGQIIAAYNEKTFVVGNIGN-----SYTGEVLKTSEDSYTVA- 162
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E ++ F P VS +LN+TPDHL RH TM+ YA TK + + +L
Sbjct: 163 -EISSFQLETVHE-FHPIVSAILNITPDHLNRHHTMECYAWTKERISENQTKADTCVLNL 220
Query: 164 GNQHLNEAIKGHRFNLAWIGAF--PGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
+++L + + N+ W + P V + + + L +H+M ++G+H
Sbjct: 221 EDKYLTDFAPECKANVVWFSSERKPSVGAYVDGEMIKY-TDGTNDYDMLNVHDMNLLGKH 279
Query: 222 NYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
NY N AA+A G+ + +E ++ + HR++ V GV + +DSK TN
Sbjct: 280 NYENVCAAIAMTKAAGIPDDIIIE----QVKKFKAVEHRIEYVATK-NGVDYYNDSKGTN 334
Query: 280 LEATCTGLMDLKGHKCVILLGGQAKFGYSG--------------VLIWKTLVNNGLSIPC 325
EA + + K IL+GG G VLI +T +
Sbjct: 335 PEAAVKAIEAMV--KPTILIGGGYDKGSEFDLYVKAFKDKVKLLVLIGQTSAKIADTCKK 392
Query: 326 FAVAN------MKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+ N M+ V+ + A +GDA++LSP CAS+ F N+E RG +F++L
Sbjct: 393 YGFENIEYADSMEQVVDICAKNAVSGDAVLLSPACASWGMFDNYEQRGRIFKDL 446
>sp|Q9F1N2|MURD_SHEVD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Shewanella
violacea (strain JCM 10179 / CIP 106290 / LMG 19151 /
DSS12) GN=murD PE=3 SV=1
Length = 449
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 107/359 (29%), Positives = 177/359 (49%), Gaps = 43/359 (11%)
Query: 34 FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALP 93
FA + RS ++ +TG+NGKSTV T VG+M G+ VGGN+G P+ L
Sbjct: 100 FARAIKDRSPCVIGITGSNGKSTVTTLVGEMAKAAGLNYAVGGNIGIPV---------LD 150
Query: 94 SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHM 153
+ + ++E+SS+Q+E + C + + LN++ DH++R+ ++ Y K L+
Sbjct: 151 LLQKPVDLYILELSSFQLETTHSLNCISAT-CLNISEDHMDRYSDLEAYRQAKLALYDQ- 208
Query: 154 VNTKLGLLPFGNQ--HLNEAIKGHRFNL-AWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210
+K L + N+ + + F L + + GVK D + + E+ +
Sbjct: 209 --SKRALFNREDSLTQPNDPMNQNSFGLTSPVNDEWGVK-DGKIVHGTTEIAS------- 258
Query: 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVT 270
L ++ ++G HN+ N +AA++ L G+D E + + HR ++V +I V
Sbjct: 259 -LQDVAIVGSHNHAN-LIAAMA-LAYHAGIDKEPMIQVAKNFTGLAHRCELV-ANIAAVA 314
Query: 271 WVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKFG--------YSGVLIWKTLVNNG 320
+V+DSKATN+ AT L L H ++++GG K ++ V TL +G
Sbjct: 315 YVNDSKATNVGATVAALEGLGEHLGDIILIVGGDGKGADFTPLETVFNKVAHLITLGKDG 374
Query: 321 LSIPCF-----AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
I +M DAV A +AT GD ++LSP CAS D ++NF RG F++LA
Sbjct: 375 DKIAALKEHSHKADSMADAVKQAAELATAGDIVLLSPACASLDMYKNFMARGDDFRQLA 433
>sp|A3DE94|MURD_CLOTH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=murD PE=3
SV=1
Length = 466
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 179/397 (45%), Gaps = 75/397 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V SE++ ++ P +I AVTG++GK+T T + ML G + ++GGN+G PL
Sbjct: 99 EEGTEVTSEMEVFFELCP--AEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPL 156
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ K +V V+E+SS+Q+ K P V+VV N++P+HL+ HK+M+ Y
Sbjct: 157 ------LSKIEEIKDTDKV-VLELSSFQLHTMTK--SPNVAVVTNVSPNHLDVHKSMEEY 207
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNE---AIKGH-----RFNLAWIGA--------FP 186
K ++F + +L F N E KG R + GA F
Sbjct: 208 VSAKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFR 267
Query: 187 GVKIDTE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEAL 245
+ +TE AK + +P V HN N A +V+ VD + +
Sbjct: 268 DGETETEIAKASDIVIPGV----------------HNVENFLAATAAVIDC---VDRDVI 308
Query: 246 NSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK- 304
HR+++V R+I GV + +DS A++ T GL K K +++ GG K
Sbjct: 309 RKVATTFTGVEHRIELV-REINGVKFYNDSIASSPTRTIAGLNSFK-DKVILIAGGYDKK 366
Query: 305 -------------------FGYSGVLIWKTLVNN------GLSIPCFAVANMKDAVNHAR 339
G + I K L + G IP ++++AV A
Sbjct: 367 IPYDALGPVIAEKVKCLVLIGQTAPKIEKVLRDETERSGKGSDIPIKKCTSLEEAVKVAY 426
Query: 340 RMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
R A+ GD ++LSP ASFD F+NFE RG F+E+ S
Sbjct: 427 RFASVGDVVILSPASASFDMFKNFEERGNRFKEIVNS 463
>sp|Q1AVX1|MURD_RUBXD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129) GN=murD PE=3
SV=1
Length = 440
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 165/350 (47%), Gaps = 39/350 (11%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
++ AVTGTNGK+TVV +L G+ V GN L+ C+ + V V
Sbjct: 103 RVAAVTGTNGKTTVVDMARHILRVAGVAHAVAGNSWRALT----GCL---EEVRRAGVLV 155
Query: 104 VEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162
+EVSS+Q+ +P F V+ +LN+ PDHL H + + YA K +F L LL
Sbjct: 156 LEVSSFQLHHLPPPGF--EVAALLNVRPDHLNWHSSFEEYARDKLRVFGGQGPGDLALLS 213
Query: 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHN 222
+ A G R + +G + +T + + + + +L G HN
Sbjct: 214 ADDPICRRAAGGLRAEVVLVG-----EGETGVRDGRLLLRGEFLAGEREL---GFAGGHN 265
Query: 223 YHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282
NA AA + +G +EA+ + R PHRMQ+V + GVT++DDSKATN A
Sbjct: 266 LKNALFAAAAAA--RLGAGLEAIREALRGYRLKPHRMQVVAEE-GGVTYIDDSKATNPAA 322
Query: 283 TCTGLMDLKGHKCVILLGGQAK-FGYSGVLI----WKTLVNNGLSIPCFA---------- 327
L+ L G V++LGG K + VL + +V G + P
Sbjct: 323 VAAALLSLGGRPAVLILGGSEKETDFEEVLPHLGGCRAVVCQGEAGPRLRDFLSERWGGE 382
Query: 328 ---VANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
++ AV ARR+A GDA++LSPGCASFD+F +E RG F LA
Sbjct: 383 VVLAGDLASAVEAARRLARPGDAVLLSPGCASFDQFSGYEERGEAFARLA 432
>sp|A0M529|MURD_GRAFK UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Gramella
forsetii (strain KT0803) GN=murD PE=3 SV=1
Length = 445
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/394 (28%), Positives = 187/394 (47%), Gaps = 64/394 (16%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + L + G V+SE++FA+ + ++ +TG+NGK+TV V +L GI +
Sbjct: 76 KAPMIVKLKEKGISVVSEIEFASWF--SEVPVIGITGSNGKTTVTNLVQHLLKEGGINSG 133
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHL 133
+GGN+GN ++ ++ V+E+SS+Q++ K F P ++++ N+TPDHL
Sbjct: 134 MGGNIGNSYAKMV--------AEEMHDWFVLELSSFQLDGIEK-FKPHIAILTNITPDHL 184
Query: 134 ERHK-TMKNYALTKCHL---------FSHMVNTK-----LGLLPFGNQHLNEAIKGHRFN 178
+R+ ++NY +K + F + + K L P +Q L +I+ N
Sbjct: 185 DRYDYKLENYIASKFRIAENQTEEDYFIYDADDKNITDWLEKNPVRSQKLPFSIEKKIEN 244
Query: 179 LAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238
A+I I F +P S+L L G+HN NA A S++ +
Sbjct: 245 GAYI---ENENIVVTINNTKFTMPT----SELALQ-----GKHNAKNAMAA--SMVSQLL 290
Query: 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVIL 298
+ + + ++ + HR++ V + I V +++DSKATN+ AT L ++ IL
Sbjct: 291 RIRKQTIRESMASFQGVEHRLEKVLK-INNVLYINDSKATNVNATFYALESMESETVWIL 349
Query: 299 LGGQAKFGYSGVLIWKTLVNNGL-SIPCFAVAN-------------------MKDAVNHA 338
G Y +L LVN + +I C V N M +AV A
Sbjct: 350 GGVDKGNVYDDLL---PLVNEKVKAIICLGVDNEKIVSAFGNIVDTMVETTSMSEAVQMA 406
Query: 339 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372
R++ GD ++LSP CASFD F N+E RG F+E
Sbjct: 407 YRLSDKGDNVLLSPACASFDLFENYEDRGRQFKE 440
>sp|A1AU63|MURD_PELPD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Pelobacter
propionicus (strain DSM 2379) GN=murD PE=3 SV=1
Length = 446
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 172/371 (46%), Gaps = 44/371 (11%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G ++SE++ A++ I ++A+TGTNGK+T T G + G FVGGN+GNPL
Sbjct: 90 EAGVEIISEIELASRFI--QAPLVAITGTNGKTTATTITGDIFIKNGFRTFVGGNIGNPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
E L S++P +V V E+SS+Q+E + F P V+ +LNL+ DHL+R+ + + Y
Sbjct: 148 IE------LLESAEPVERV-VAEISSFQLEWI-RAFRPAVAALLNLSEDHLDRYASYREY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F + ++ ++ + E +G R L FP + E F
Sbjct: 200 IEAKLRIFENQTADDYAVVNADDELVMEHSRGLRACL-----FPFSR-KQELDEGIFHRE 253
Query: 203 AV------GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ G + ++ G HN N A L L+ E+L + +
Sbjct: 254 GLIVWRHNGREERFPTAGFRLQGVHNLENIMAALACSLLLECR-PTESL-ACVREFEALH 311
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFG-YS------- 308
HRM+ V R++ GV W +DSKATN+ + L ++ GG+ K G YS
Sbjct: 312 HRMEFV-RELNGVRWYEDSKATNVGSVEKALESFDA--ITLIAGGKDKGGSYSPLSRLVR 368
Query: 309 ---------GVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359
G + G A +++AV+ A + G +++SP C+SFD
Sbjct: 369 ERVRHLVLIGEAAGRMQEELGTLTDTRRAATLEEAVSLAAELTAPGGTVLMSPACSSFDM 428
Query: 360 FRNFEHRGMVF 370
FR++E R +
Sbjct: 429 FRDYEERAQRY 439
>sp|Q1D0S8|MURD_MYXXD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Myxococcus
xanthus (strain DK 1622) GN=murD PE=3 SV=1
Length = 455
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 173/381 (45%), Gaps = 53/381 (13%)
Query: 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83
+G V E++ A +++ + + +TGTNGKST G + FVGGNLG P S
Sbjct: 93 AGVAVWGEVELAGRML-SGVPLFGITGTNGKSTTTALTGTLFASGDKRTFVGGNLGRPFS 151
Query: 84 EAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYA 143
EAA S + VVE+SSYQ+E + P + +LNLTPDH++R+ + Y
Sbjct: 152 EAAM-------SPGDWDALVVELSSYQLE-GIRTLRPRGAAILNLTPDHIDRYPSHAAYG 203
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQH------LNEAIKGHRFNLAWIG-------AFPGVKI 190
K +F N + G N L A K + + G A G+ +
Sbjct: 204 EAKARIFQ---NQQAGDFVVVNADDADVLGLARAAKAPVYGFSLTGKPVADAPALAGLAV 260
Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNSTI 249
+ F + +G L N + G HN NA AAL LG GV A+ + +
Sbjct: 261 ---VEPGGFRLAFLG--EHYTLTNRALRGAHNAQNAMAAALLARLG---GVASGAVQAGL 312
Query: 250 EILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSG 309
+ PHR++ V R + GV WV+DSKATN+++ L ++ GG+ K
Sbjct: 313 DGYPGLPHRLESV-RVLDGVEWVNDSKATNVDSVLVALRAFS-QGVWLIAGGKGKGAPYA 370
Query: 310 VLIW------KTLVNNGLSIPCFAVA-----------NMKDAVNHARRMATNGDAIVLSP 352
++ K ++ G A A + AV AR +A GD ++LSP
Sbjct: 371 PMVEAGQGKVKGVLTIGDDADTLARAYAGAAQVHACGTLAHAVARARELAERGDTVLLSP 430
Query: 353 GCASFDEFRNFEHRGMVFQEL 373
CASFD+F+NFE RG F+ L
Sbjct: 431 ACASFDQFKNFEDRGDSFKRL 451
>sp|Q7N145|MURD_PHOLL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=murD PE=3
SV=1
Length = 436
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 113/357 (31%), Positives = 175/357 (49%), Gaps = 58/357 (16%)
Query: 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
I+A+TG+NGKSTV + VG+M + VGGN+G P AL K Q+ V+
Sbjct: 107 IVAITGSNGKSTVTSLVGEMAKAANWQVGVGGNIGLP---------ALELLKKSCQLYVL 157
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSH----MVNTKLG 159
E+SS+Q+E T + VLN+T DH++R+ + + Y K ++ +VN +
Sbjct: 158 ELSSFQLET-TYSLNATAAAVLNVTEDHMDRYPQGVSQYRAAKLRIYHQAKRCIVNAQDP 216
Query: 160 L-LP---FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215
L LP ++ ++ + + L AF +K+ ++ A+ E+
Sbjct: 217 LTLPEMGMDSRCVSFGVDCGDYQLDSENAF--LKVHNQSLLATNEI-------------- 260
Query: 216 KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275
K+ GRHNY N VA L +G+ EA +T+ + HR Q+ + +GV W++DS
Sbjct: 261 KLTGRHNYANGLVAL--ALADAVGIPREASLATLTVYPGLDHRFQLARLN-KGVRWINDS 317
Query: 276 KATNLEATCTGL--MDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFA------ 327
KATN+ +T L ++L+G +LLGG K L L N + + CF
Sbjct: 318 KATNVGSTMAALDGLNLEG-TLYLLLGGDGKSADFSPL-KPFLCGNKVQLYCFGRDGKQL 375
Query: 328 ------VANMKDAVNHA-RRMATN---GDAIVLSPGCASFDEFRNFEHRGMVFQELA 374
+A + + + A R +A GD ++LSP CAS D+FRNFE RG F LA
Sbjct: 376 AQLRPEIATLTETMEQAIRDIAPRLVAGDMVLLSPACASLDQFRNFEQRGHEFTRLA 432
>sp|Q3AZI5|MURD_SYNS9 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Synechococcus
sp. (strain CC9902) GN=murD PE=3 SV=1
Length = 462
Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 179/389 (46%), Gaps = 53/389 (13%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G ++ E++ A + + I + +TGTNGK+TV + +L H GI A +GGN
Sbjct: 86 LNGLRQEGVQIRGEIELAWEAL-NDIPWVGITGTNGKTTVTHLLSHVLGHAGIVAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI-PNKYFCPTVSVVLNLTPDHLERH 136
+G ++ A + KP + V+E+SSYQ+E PN P++ + LTPDHLERH
Sbjct: 145 MGVSAADMALKIRRGETPKPDW--LVMELSSYQIEAGPN--LAPSIGIWTTLTPDHLERH 200
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA---WIGAFPGVKIDTE 193
T++ Y K H + + L F + + HR +L W+ A P D
Sbjct: 201 GTLEAYRAIK-----HSLLQRSSLAIFNGDDAD--LSAHRPSLKRGMWVKAAPPCHDD-- 251
Query: 194 AKTASFEVPAVGVVSQLQLHNM---KVM---GRHNYHNAAVAALSVLGLDIGVDVEALNS 247
A F + G V + M KV+ G HN N + ++ IG++ E +
Sbjct: 252 -PPADFWIDDAGTVQAREGGAMFPAKVLAMPGAHNRQNLLL--VTAAAAQIGLNAEQIAQ 308
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGY 307
+E PHR++ + +DSKATN +A GL + G V+L GGQ K G
Sbjct: 309 GLESFPGVPHRLENLG-STSSADVFNDSKATNYDAAAVGLQAMAG-PVVVLAGGQTKRGN 366
Query: 308 SGVLIWKTLVNNGLSIPCFAVA---------------------NMKDAVNHARRMAT--N 344
+ + L + ++ F ++ AV A R +
Sbjct: 367 ATGWL-AELKSKACAVVLFGAGAEELDALIRQSNYQGQVHRCTDLSAAVAIAVRATSELQ 425
Query: 345 GDAIVLSPGCASFDEFRNFEHRGMVFQEL 373
+++LSP CASFD++++FE RG F++L
Sbjct: 426 ASSLLLSPACASFDQYQDFEARGDHFRDL 454
>sp|Q68WW9|MURD_RICTY UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=murD PE=3 SV=1
Length = 457
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 107/371 (28%), Positives = 184/371 (49%), Gaps = 44/371 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++S++D + +++K +A+TGTNGKST + +LN G++ V GN+G P +A
Sbjct: 90 IISDIDLLFEK-SKNLKFIAITGTNGKSTTAALISHILNSNGLDYTVAGNIGVPALQA-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+SK + V+E+SS+Q+++ K F V+V+LN+TPDHL+R++ M Y K
Sbjct: 147 -----KASKDGY---VLELSSFQLDLV-KIFTVKVAVLLNITPDHLDRYQDMNGYIAAKA 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEA-IKGHRFNLAWIGAFPGVKI-DTEAKTASFEVPAVG 205
+F M ++ N + + + R L + F KI + ++
Sbjct: 198 KIFDRMDKDSYAVINIDNDYCRKIFLLLQREQLIKLIPFSVTKILNNGISIVDDKIHDNN 257
Query: 206 VVSQLQLHNMKVMGRHNYHN-AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ +L L N + G HN N AA A+S + IGV+ + + +I ++ HRMQ +
Sbjct: 258 LTYKLPL-NKNLQGLHNCENIAASYAVSKI---IGVESKKILESISSFQSLHHRMQYIGS 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG--QAKFGYSGVLIW--------- 313
I +++ +DSKATN + L +K + L G + G G+ +
Sbjct: 314 -INNISFYNDSKATN---AISALQSIKALDNIYWLAGGIPKEGGIEGIKPYFNKIKKAYF 369
Query: 314 ----KTLVNNGLS--IPCFAVANMKDAVNHARRMATNGDA----IVLSPGCASFDEFRNF 363
KT+ N I C N++ A N A + A + + I+L+P C+S+D+F+NF
Sbjct: 370 YGQAKTMFANTAKNIIDCVICDNLEYAFNIAYKDAVSDNTEIKNILLAPSCSSYDQFKNF 429
Query: 364 EHRGMVFQELA 374
E RG +F +L+
Sbjct: 430 EERGELFIKLS 440
>sp|A8MH34|MURD_ALKOO UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Alkaliphilus
oremlandii (strain OhILAs) GN=murD PE=3 SV=1
Length = 454
Score = 128 bits (322), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 46/379 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G ++ E++ A ++ I +A+TGTNGK+T + VG++ + G V GN+G
Sbjct: 90 LRARGIEIIGEIELAYRLAQGHI--VAITGTNGKTTTTSLVGEIFKNAGRRTHVVGNIG- 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTM 139
AF AL ++ V V+E SS+Q+E I + F P V +LNLTPDHL RHKTM
Sbjct: 147 ----VAFISKALETTAD--DVIVIEASSFQLESIVD--FRPQVGAILNLTPDHLNRHKTM 198
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF----PGVKIDTEAK 195
+NY K ++F + + ++ + + L E K + GV ++
Sbjct: 199 ENYQKAKFNIFKNQGAEDIAVINYDDVKLREESKQIYAKKVYFSRRTLLEEGVFVEDGKI 258
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
A + ++S+ ++ + G HN NA A + + L +GVD++ + T++ +
Sbjct: 259 VALKDGHKKEIISK---DDIFIPGNHNLENALAA--TAMTLSLGVDIDVIQHTLKTFKGV 313
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL--GGQAK--------F 305
HR +IV I GV +++DSK TN +A+ G ++G ILL GG K
Sbjct: 314 EHRTEIVDV-IHGVRFINDSKGTNPDASIKG---IEGINTPILLIAGGYDKGSDFDEFIN 369
Query: 306 GYSG----VLIWKTLVNNGLS-------IPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
+ G + ++ N + I V N+ +AV A +A GD ++LSP C
Sbjct: 370 AFDGKVKHMFVYGETANTLMETAKKLNFIDVTKVQNLDEAVKKAYDIAIQGDTVLLSPAC 429
Query: 355 ASFDEFRNFEHRGMVFQEL 373
AS+D + NFE RG F+E+
Sbjct: 430 ASWDMYENFEMRGKHFKEI 448
>sp|B5FB37|MURD_VIBFM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio fischeri
(strain MJ11) GN=murD PE=3 SV=1
Length = 440
Score = 128 bits (322), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 185/379 (48%), Gaps = 60/379 (15%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G +++ +++ A + + ++A+TG+NGKSTV G+M G++ VGGN+G
Sbjct: 89 IDKGIQIVGDIELFAWAV--NAPVIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG-- 144
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL + ++ V+E+SS+Q+E + + LNL+ DH++R++ M +
Sbjct: 145 -------FAALDLLEQDAELYVLELSSFQLETTSTLKLK-AAAFLNLSEDHMDRYQGMAD 196
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQH----LNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +F H ++ ++ ++ + + +K F+ G I+ AK A
Sbjct: 197 YRQAKLRIFDH---AEVCIVNRDDKQTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKDA 253
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP 255
+S L + + ++G+HN N+ A+A L +G++ L++T++ LRT
Sbjct: 254 ---------MSLLAANELGLVGKHNIANSLVAIALLDAVGIN-------LDATLDTLRTY 297
Query: 256 ---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHKCVILLGGQAKFGYSGV 310
HR Q+V D G+ WV+DSKATN+ +T L + L+G K +L+GG K G
Sbjct: 298 NGLTHRCQVV-ADNNGIRWVNDSKATNVASTLAALSGLQLEG-KLHLLVGGVGK-GADFS 354
Query: 311 LIWKTLVNNGLSIPCFA---------------VANMKDAVNHARRMATNGDAIVLSPGCA 355
+ L + L + CF M +AV GD ++LSP CA
Sbjct: 355 ELSPALHDLNLMMYCFGEDGDQFVSLDPRSLLCETMDEAVATLYPTLNKGDMVMLSPACA 414
Query: 356 SFDEFRNFEHRGMVFQELA 374
SFD++ NF RG F +LA
Sbjct: 415 SFDQYANFMARGDAFTQLA 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,915,225
Number of Sequences: 539616
Number of extensions: 5491313
Number of successful extensions: 16132
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 335
Number of HSP's that attempted gapping in prelim test: 13572
Number of HSP's gapped (non-prelim): 1320
length of query: 377
length of database: 191,569,459
effective HSP length: 119
effective length of query: 258
effective length of database: 127,355,155
effective search space: 32857629990
effective search space used: 32857629990
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)