Query 017087
Match_columns 377
No_of_seqs 249 out of 1761
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:29:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0771 MurD UDP-N-acetylmuram 100.0 6.1E-69 1.3E-73 514.4 36.5 351 3-376 71-445 (448)
2 PRK01368 murD UDP-N-acetylmura 100.0 1.2E-68 2.7E-73 526.0 38.3 353 3-376 65-445 (454)
3 TIGR01087 murD UDP-N-acetylmur 100.0 6.1E-68 1.3E-72 522.0 39.7 350 3-376 64-433 (433)
4 PRK03803 murD UDP-N-acetylmura 100.0 9.1E-67 2E-71 515.5 39.2 349 3-376 70-445 (448)
5 PRK04308 murD UDP-N-acetylmura 100.0 1.1E-66 2.4E-71 514.5 39.1 354 2-376 68-444 (445)
6 PRK01710 murD UDP-N-acetylmura 100.0 1.2E-66 2.6E-71 515.1 38.4 354 3-376 79-457 (458)
7 PRK03369 murD UDP-N-acetylmura 100.0 4E-66 8.7E-71 513.7 38.2 350 3-376 72-485 (488)
8 PRK04663 murD UDP-N-acetylmura 100.0 4.7E-66 1E-70 508.3 38.3 351 2-376 69-436 (438)
9 PRK00141 murD UDP-N-acetylmura 100.0 5E-65 1.1E-69 504.4 40.0 357 3-376 76-465 (473)
10 PRK01390 murD UDP-N-acetylmura 100.0 4.2E-65 9E-70 505.3 38.0 356 2-376 66-457 (460)
11 PRK02705 murD UDP-N-acetylmura 100.0 9.8E-65 2.1E-69 503.0 39.2 359 3-376 70-454 (459)
12 PRK04690 murD UDP-N-acetylmura 100.0 2.7E-64 5.9E-69 498.2 39.2 356 2-376 70-454 (468)
13 PRK02472 murD UDP-N-acetylmura 100.0 5.4E-64 1.2E-68 496.2 39.3 356 2-376 69-443 (447)
14 PRK03806 murD UDP-N-acetylmura 100.0 4.9E-64 1.1E-68 494.8 37.7 347 3-376 67-436 (438)
15 PRK01438 murD UDP-N-acetylmura 100.0 9.1E-63 2E-67 491.2 38.1 360 2-376 79-475 (480)
16 PRK02006 murD UDP-N-acetylmura 100.0 1.2E-62 2.5E-67 491.7 38.4 360 3-376 71-489 (498)
17 PRK03815 murD UDP-N-acetylmura 100.0 2.4E-60 5.2E-65 459.5 34.0 325 3-376 56-400 (401)
18 PRK14106 murD UDP-N-acetylmura 100.0 1.3E-59 2.7E-64 465.4 39.4 359 3-376 70-449 (450)
19 COG0773 MurC UDP-N-acetylmuram 100.0 1.7E-58 3.7E-63 437.4 34.2 337 3-362 68-451 (459)
20 PRK00683 murD UDP-N-acetylmura 100.0 1.8E-56 4E-61 437.7 32.6 330 3-376 61-413 (418)
21 PRK00421 murC UDP-N-acetylmura 100.0 5.6E-56 1.2E-60 439.8 35.8 341 2-363 67-451 (461)
22 TIGR01082 murC UDP-N-acetylmur 100.0 9.4E-56 2E-60 436.6 35.7 340 2-361 59-444 (448)
23 TIGR01081 mpl UDP-N-acetylmura 100.0 3.3E-55 7.2E-60 432.7 34.3 339 3-362 62-441 (448)
24 PRK10773 murF UDP-N-acetylmura 100.0 1.1E-53 2.3E-58 421.9 27.0 309 42-376 99-446 (453)
25 TIGR01143 murF UDP-N-acetylmur 100.0 1.1E-52 2.5E-57 411.0 28.9 308 42-376 73-416 (417)
26 COG0770 MurF UDP-N-acetylmuram 100.0 1.5E-50 3.2E-55 391.6 30.9 309 41-376 101-447 (451)
27 PRK14093 UDP-N-acetylmuramoyla 100.0 9.5E-51 2.1E-55 403.3 28.0 310 42-376 107-463 (479)
28 PRK00139 murE UDP-N-acetylmura 100.0 2.5E-49 5.4E-54 391.8 31.5 303 42-362 94-442 (460)
29 PRK14573 bifunctional D-alanyl 100.0 4E-49 8.6E-54 414.0 34.1 334 3-364 65-444 (809)
30 TIGR01085 murE UDP-N-acetylmur 100.0 3.6E-49 7.7E-54 391.6 31.5 312 42-362 84-456 (464)
31 PRK11929 putative bifunctional 100.0 6.5E-49 1.4E-53 420.5 30.2 309 42-376 602-956 (958)
32 PRK11929 putative bifunctional 100.0 6E-48 1.3E-52 413.1 30.5 314 41-361 110-481 (958)
33 PRK11930 putative bifunctional 100.0 5.4E-48 1.2E-52 406.4 28.5 306 41-375 105-451 (822)
34 PRK14022 UDP-N-acetylmuramoyla 100.0 1.9E-47 4.2E-52 380.3 30.0 306 41-360 108-462 (481)
35 COG0769 MurE UDP-N-acetylmuram 100.0 1.4E-46 3E-51 368.0 29.7 313 41-362 89-457 (475)
36 TIGR01499 folC folylpolyglutam 100.0 3.4E-46 7.3E-51 363.3 26.9 302 41-364 16-394 (397)
37 TIGR02068 cya_phycin_syn cyano 100.0 1.6E-43 3.6E-48 371.1 31.8 307 41-352 477-848 (864)
38 PRK10846 bifunctional folylpol 100.0 3.2E-43 6.9E-48 343.7 27.4 307 29-364 32-411 (416)
39 PLN02913 dihydrofolate synthet 100.0 3.8E-41 8.3E-46 334.6 27.8 325 29-364 58-505 (510)
40 COG0285 FolC Folylpolyglutamat 100.0 1.4E-40 3.1E-45 318.2 27.7 313 29-365 27-419 (427)
41 PLN02881 tetrahydrofolylpolygl 100.0 5.4E-35 1.2E-39 286.4 27.1 235 29-290 42-349 (530)
42 PRK14016 cyanophycin synthetas 100.0 8.2E-34 1.8E-38 292.7 15.7 218 42-261 479-726 (727)
43 PF08245 Mur_ligase_M: Mur lig 100.0 1.2E-32 2.5E-37 241.1 17.7 176 48-235 1-188 (188)
44 KOG2525 Folylpolyglutamate syn 100.0 1.2E-27 2.6E-32 225.9 18.9 224 41-290 70-356 (496)
45 PF02875 Mur_ligase_C: Mur lig 98.9 1.1E-09 2.4E-14 83.8 4.9 60 255-316 1-64 (91)
46 COG1703 ArgK Putative periplas 96.6 0.017 3.7E-07 53.1 9.8 126 33-169 39-204 (323)
47 PRK09435 membrane ATPase/prote 94.1 0.82 1.8E-05 43.4 11.9 37 41-77 54-92 (332)
48 cd01983 Fer4_NifH The Fer4_Nif 92.8 0.74 1.6E-05 34.2 7.8 30 46-75 2-33 (99)
49 PF00485 PRK: Phosphoribulokin 92.0 0.15 3.3E-06 44.4 3.3 27 45-71 1-29 (194)
50 TIGR03172 probable selenium-de 91.7 0.22 4.8E-06 44.7 4.1 33 45-77 1-33 (232)
51 PRK15453 phosphoribulokinase; 91.6 0.33 7.1E-06 44.8 5.1 29 41-69 3-33 (290)
52 TIGR03029 EpsG chain length de 90.6 0.59 1.3E-05 43.1 5.9 34 41-74 101-137 (274)
53 PRK13869 plasmid-partitioning 90.2 0.43 9.4E-06 46.7 4.9 34 42-75 120-156 (405)
54 PHA02519 plasmid partition pro 89.8 0.49 1.1E-05 46.0 4.9 34 42-75 105-141 (387)
55 PRK00652 lpxK tetraacyldisacch 89.8 0.49 1.1E-05 44.8 4.7 34 42-75 48-85 (325)
56 cd02117 NifH_like This family 89.4 0.58 1.3E-05 41.3 4.7 30 45-74 2-33 (212)
57 PRK13705 plasmid-partitioning 89.3 0.55 1.2E-05 45.7 4.8 34 42-75 105-141 (388)
58 COG1763 MobB Molybdopterin-gua 89.2 0.57 1.2E-05 39.5 4.2 37 43-79 2-40 (161)
59 COG2894 MinD Septum formation 88.8 0.52 1.1E-05 41.6 3.7 37 44-80 3-43 (272)
60 COG0132 BioD Dethiobiotin synt 88.8 0.66 1.4E-05 41.3 4.5 32 43-74 2-36 (223)
61 PRK07667 uridine kinase; Provi 88.7 1.1 2.4E-05 39.0 5.9 31 42-72 16-48 (193)
62 cd02040 NifH NifH gene encodes 88.6 0.65 1.4E-05 42.5 4.6 26 49-74 9-34 (270)
63 PF08353 DUF1727: Domain of un 88.5 1.7 3.7E-05 34.3 6.3 47 305-351 60-107 (113)
64 PRK06696 uridine kinase; Valid 88.4 1.2 2.5E-05 39.8 6.0 34 41-74 20-55 (223)
65 TIGR01007 eps_fam capsular exo 88.3 1.1 2.3E-05 39.2 5.7 34 41-74 15-51 (204)
66 PRK13232 nifH nitrogenase redu 88.3 0.72 1.6E-05 42.5 4.7 32 44-75 2-35 (273)
67 PRK14494 putative molybdopteri 87.9 0.81 1.7E-05 41.0 4.6 34 43-76 1-36 (229)
68 PRK05439 pantothenate kinase; 87.6 1.1 2.4E-05 42.1 5.4 35 42-76 85-123 (311)
69 TIGR03453 partition_RepA plasm 87.5 0.86 1.9E-05 44.4 4.9 34 42-75 103-139 (387)
70 COG1936 Predicted nucleotide k 87.4 0.55 1.2E-05 39.8 3.0 25 45-73 2-28 (180)
71 COG1072 CoaA Panthothenate kin 87.4 1.1 2.5E-05 40.9 5.1 40 41-80 80-123 (283)
72 cd03114 ArgK-like The function 87.2 6.7 0.00014 32.5 9.4 107 46-164 2-147 (148)
73 PHA02518 ParA-like protein; Pr 87.1 0.97 2.1E-05 39.5 4.6 30 45-74 2-34 (211)
74 TIGR03018 pepcterm_TyrKin exop 87.1 1.1 2.3E-05 39.5 4.9 33 42-74 34-70 (207)
75 cd02028 UMPK_like Uridine mono 87.1 0.89 1.9E-05 39.1 4.3 29 45-73 1-31 (179)
76 COG0552 FtsY Signal recognitio 87.0 0.98 2.1E-05 42.4 4.6 35 42-76 138-174 (340)
77 PRK13230 nitrogenase reductase 86.8 0.97 2.1E-05 41.8 4.6 32 44-75 2-35 (279)
78 TIGR03371 cellulose_yhjQ cellu 86.5 1.1 2.3E-05 40.4 4.7 31 44-74 2-35 (246)
79 PRK14493 putative bifunctional 86.4 1.1 2.5E-05 41.3 4.8 34 43-77 1-36 (274)
80 PRK10037 cell division protein 86.4 1.1 2.4E-05 40.6 4.7 31 44-74 2-35 (250)
81 PF03205 MobB: Molybdopterin g 86.2 1.2 2.5E-05 36.7 4.3 31 44-74 1-33 (140)
82 COG2403 Predicted GTPase [Gene 86.1 0.84 1.8E-05 43.3 3.7 32 42-73 125-159 (449)
83 PRK13235 nifH nitrogenase redu 85.9 1.2 2.6E-05 41.0 4.8 31 44-74 2-34 (274)
84 cd02029 PRK_like Phosphoribulo 85.8 1.1 2.3E-05 41.2 4.1 28 45-72 1-30 (277)
85 COG4240 Predicted kinase [Gene 85.7 1.4 3.1E-05 39.1 4.7 56 20-76 28-86 (300)
86 cd03116 MobB Molybdenum is an 85.5 1.5 3.3E-05 36.9 4.7 33 43-75 1-35 (159)
87 TIGR00554 panK_bact pantothena 85.2 1.8 3.9E-05 40.3 5.5 28 41-68 60-89 (290)
88 cd02032 Bchl_like This family 85.2 1.3 2.8E-05 40.6 4.6 29 46-74 3-33 (267)
89 TIGR00064 ftsY signal recognit 85.1 1.4 3.1E-05 40.6 4.8 36 42-77 71-108 (272)
90 TIGR02016 BchX chlorophyllide 84.8 1.4 3.1E-05 41.2 4.7 31 45-75 2-34 (296)
91 COG0769 MurE UDP-N-acetylmuram 84.7 0.19 4.1E-06 50.2 -1.3 123 14-139 36-162 (475)
92 PF06564 YhjQ: YhjQ protein; 84.5 1.2 2.6E-05 40.3 3.8 29 45-73 6-34 (243)
93 cd02033 BchX Chlorophyllide re 84.3 1.7 3.7E-05 41.2 5.0 36 41-76 29-66 (329)
94 PF01656 CbiA: CobQ/CobB/MinD/ 84.1 1.3 2.7E-05 38.1 3.8 30 45-74 3-32 (195)
95 TIGR00176 mobB molybdopterin-g 83.6 1.6 3.4E-05 36.6 4.0 32 45-76 1-34 (155)
96 PRK14974 cell division protein 83.6 2 4.3E-05 41.0 5.1 34 43-76 140-175 (336)
97 COG3367 Uncharacterized conser 83.5 2.7 5.8E-05 39.3 5.7 65 13-77 109-185 (339)
98 PRK13234 nifH nitrogenase redu 83.5 1.8 4E-05 40.4 4.9 34 42-75 3-38 (295)
99 TIGR01287 nifH nitrogenase iro 83.4 1.7 3.6E-05 40.0 4.5 30 45-74 2-33 (275)
100 PRK14495 putative molybdopteri 83.3 1.7 3.6E-05 42.7 4.5 34 43-76 1-36 (452)
101 PRK00784 cobyric acid synthase 83.3 1.4 3.1E-05 44.2 4.3 30 44-73 3-35 (488)
102 TIGR01281 DPOR_bchL light-inde 83.0 1.3 2.7E-05 40.7 3.5 26 49-74 8-33 (268)
103 PF03308 ArgK: ArgK protein; 83.0 3.1 6.6E-05 37.9 5.8 132 21-166 7-179 (266)
104 PRK11670 antiporter inner memb 82.8 1.9 4.2E-05 41.6 4.8 33 42-74 106-141 (369)
105 COG0572 Udk Uridine kinase [Nu 82.8 1.2 2.5E-05 39.5 3.0 26 43-68 8-35 (218)
106 TIGR01425 SRP54_euk signal rec 82.6 2.3 4.9E-05 41.9 5.2 35 43-77 100-136 (429)
107 PRK10416 signal recognition pa 82.0 2.4 5.2E-05 40.1 5.0 36 42-77 113-150 (318)
108 PRK10751 molybdopterin-guanine 81.5 2.7 5.9E-05 35.9 4.7 35 42-76 5-41 (173)
109 CHL00072 chlL photochlorophyll 81.3 1.6 3.5E-05 40.7 3.6 26 49-74 8-33 (290)
110 cd02036 MinD Bacterial cell di 81.3 2 4.3E-05 36.4 3.9 30 46-75 5-34 (179)
111 TIGR01968 minD_bact septum sit 81.2 2.2 4.8E-05 38.6 4.5 31 44-74 2-35 (261)
112 COG0529 CysC Adenylylsulfate k 80.8 4.6 9.9E-05 34.6 5.6 33 41-73 21-55 (197)
113 COG0541 Ffh Signal recognition 80.6 3.6 7.8E-05 40.1 5.7 109 42-159 99-217 (451)
114 PF13500 AAA_26: AAA domain; P 80.5 2.4 5.1E-05 36.9 4.2 31 44-74 1-34 (199)
115 PRK13185 chlL protochlorophyll 80.5 1.8 3.9E-05 39.7 3.6 31 44-74 3-35 (270)
116 PRK13849 putative crown gall t 80.3 1.9 4.1E-05 38.8 3.5 31 44-74 2-35 (231)
117 KOG3347 Predicted nucleotide k 80.3 1.6 3.5E-05 36.2 2.8 28 42-72 6-35 (176)
118 cd02025 PanK Pantothenate kina 80.3 2.5 5.3E-05 37.7 4.2 23 45-67 1-25 (220)
119 PRK13236 nitrogenase reductase 80.2 2.9 6.2E-05 39.1 4.9 34 42-75 5-40 (296)
120 PRK12374 putative dithiobiotin 79.7 2.8 6.1E-05 37.5 4.5 31 45-75 4-37 (231)
121 cd02042 ParA ParA and ParB of 79.6 2.9 6.3E-05 32.0 4.0 47 45-109 4-50 (104)
122 cd02023 UMPK Uridine monophosp 79.6 2.4 5.1E-05 36.9 3.9 21 45-65 1-23 (198)
123 TIGR00455 apsK adenylylsulfate 79.5 5.8 0.00013 34.0 6.3 41 30-71 6-48 (184)
124 PF01583 APS_kinase: Adenylyls 79.5 3.6 7.7E-05 34.5 4.7 30 44-73 3-34 (156)
125 TIGR00682 lpxK tetraacyldisacc 79.3 3.1 6.8E-05 39.1 4.8 35 42-76 27-65 (311)
126 PRK00889 adenylylsulfate kinas 79.2 3.9 8.5E-05 34.7 5.1 33 41-73 2-36 (175)
127 cd03109 DTBS Dethiobiotin synt 78.8 4.5 9.8E-05 32.9 5.1 43 47-107 4-47 (134)
128 cd01672 TMPK Thymidine monopho 78.6 3.5 7.5E-05 35.4 4.7 31 45-75 2-34 (200)
129 cd02037 MRP-like MRP (Multiple 77.9 2.6 5.7E-05 35.6 3.5 26 49-74 8-33 (169)
130 PRK03846 adenylylsulfate kinas 77.6 6.3 0.00014 34.3 5.9 42 30-72 12-55 (198)
131 PRK12723 flagellar biosynthesi 77.5 2.1 4.5E-05 41.6 3.1 34 44-77 175-214 (388)
132 cd02034 CooC The accessory pro 77.4 4.4 9.6E-05 32.1 4.5 27 50-76 8-34 (116)
133 PF13207 AAA_17: AAA domain; P 77.4 2.5 5.4E-05 33.2 3.1 26 45-73 1-28 (121)
134 PRK01077 cobyrinic acid a,c-di 77.1 3.2 6.9E-05 41.3 4.4 31 43-73 3-36 (451)
135 CHL00175 minD septum-site dete 77.0 4.1 8.9E-05 37.6 4.9 33 42-74 14-49 (281)
136 COG0237 CoaE Dephospho-CoA kin 76.8 2.4 5.1E-05 37.3 3.0 30 43-76 2-33 (201)
137 COG3954 PrkB Phosphoribulokina 76.8 1.7 3.8E-05 37.5 2.1 32 41-72 3-36 (289)
138 COG0489 Mrp ATPases involved i 76.5 4.5 9.8E-05 37.1 4.9 33 42-74 56-91 (265)
139 PRK01906 tetraacyldisaccharide 76.4 4.3 9.4E-05 38.7 4.9 34 42-75 55-92 (338)
140 PTZ00301 uridine kinase; Provi 76.2 3.3 7.1E-05 36.6 3.8 25 42-66 2-28 (210)
141 PRK00090 bioD dithiobiotin syn 76.0 3.9 8.5E-05 36.2 4.3 29 46-74 2-33 (222)
142 cd03115 SRP The signal recogni 76.0 4.9 0.00011 34.0 4.7 32 45-76 2-35 (173)
143 TIGR00041 DTMP_kinase thymidyl 75.9 3.7 8.1E-05 35.4 4.0 31 43-73 3-35 (195)
144 COG1618 Predicted nucleotide k 75.6 3.9 8.4E-05 34.5 3.7 30 43-72 5-36 (179)
145 PRK05480 uridine/cytidine kina 75.6 3.4 7.5E-05 36.2 3.8 25 41-65 4-30 (209)
146 TIGR01969 minD_arch cell divis 75.5 3.4 7.3E-05 37.2 3.8 30 45-74 2-34 (251)
147 COG1797 CobB Cobyrinic acid a, 75.5 6.6 0.00014 38.4 5.8 27 46-72 3-32 (451)
148 KOG0635 Adenosine 5'-phosphosu 75.4 5 0.00011 33.3 4.3 33 40-72 28-62 (207)
149 PRK09841 cryptic autophosphory 75.3 5.6 0.00012 42.2 5.8 35 41-75 529-566 (726)
150 cd02019 NK Nucleoside/nucleoti 75.2 5.2 0.00011 28.3 3.9 26 45-72 1-28 (69)
151 PRK09270 nucleoside triphospha 74.9 6.5 0.00014 35.1 5.4 31 41-71 31-63 (229)
152 PF07015 VirC1: VirC1 protein; 74.7 3.5 7.5E-05 36.9 3.5 33 44-76 2-37 (231)
153 PF02606 LpxK: Tetraacyldisacc 74.1 5.1 0.00011 38.0 4.7 35 42-76 34-72 (326)
154 PRK13231 nitrogenase reductase 74.1 1.8 3.9E-05 39.5 1.6 30 44-74 3-34 (264)
155 COG3640 CooC CO dehydrogenase 73.7 4.2 9.1E-05 36.4 3.7 28 45-72 2-32 (255)
156 PF13614 AAA_31: AAA domain; P 73.7 5.4 0.00012 32.9 4.3 31 44-74 1-34 (157)
157 PRK00771 signal recognition pa 73.7 5.7 0.00012 39.3 5.0 34 43-76 95-130 (437)
158 COG1192 Soj ATPases involved i 73.6 4.3 9.4E-05 36.8 4.0 30 45-74 7-37 (259)
159 PRK13233 nifH nitrogenase redu 73.5 3.5 7.6E-05 37.9 3.4 32 44-75 3-37 (275)
160 TIGR00750 lao LAO/AO transport 73.4 6.1 0.00013 37.0 5.0 36 41-76 32-69 (300)
161 PRK14489 putative bifunctional 72.7 5.7 0.00012 38.4 4.8 36 42-77 204-241 (366)
162 PF13521 AAA_28: AAA domain; P 72.5 2.6 5.7E-05 35.3 2.1 19 46-64 2-22 (163)
163 PF09140 MipZ: ATPase MipZ; I 72.4 3.9 8.5E-05 37.0 3.3 30 45-74 2-34 (261)
164 PF01121 CoaE: Dephospho-CoA k 72.4 3.3 7.2E-05 35.7 2.7 24 45-72 2-27 (180)
165 KOG3308 Uncharacterized protei 72.2 3.3 7.1E-05 36.1 2.6 27 42-68 3-31 (225)
166 KOG3022 Predicted ATPase, nucl 71.4 4 8.7E-05 37.4 3.1 32 43-74 47-81 (300)
167 PRK10818 cell division inhibit 71.3 5 0.00011 36.7 3.9 31 44-74 3-36 (270)
168 PTZ00451 dephospho-CoA kinase; 71.3 4 8.6E-05 37.0 3.1 21 44-64 2-24 (244)
169 PRK10867 signal recognition pa 71.0 7 0.00015 38.6 5.0 35 43-77 100-137 (433)
170 PRK08233 hypothetical protein; 70.1 4.4 9.5E-05 34.4 3.0 24 43-66 3-28 (182)
171 COG1663 LpxK Tetraacyldisaccha 69.7 6.9 0.00015 36.9 4.4 33 42-74 46-82 (336)
172 COG1102 Cmk Cytidylate kinase 69.6 5.6 0.00012 33.6 3.3 30 45-77 2-33 (179)
173 PF00448 SRP54: SRP54-type pro 69.4 7.5 0.00016 33.9 4.4 32 45-77 6-37 (196)
174 PRK00698 tmk thymidylate kinas 69.1 8.4 0.00018 33.3 4.7 30 43-72 3-34 (205)
175 cd03111 CpaE_like This protein 68.9 6.7 0.00015 30.3 3.6 28 47-74 6-34 (106)
176 PRK11519 tyrosine kinase; Prov 68.9 9.7 0.00021 40.4 5.8 35 41-75 524-561 (719)
177 TIGR00313 cobQ cobyric acid sy 68.8 5.1 0.00011 40.1 3.6 23 52-74 10-32 (475)
178 PLN03046 D-glycerate 3-kinase; 68.5 8 0.00017 37.9 4.7 35 42-76 211-247 (460)
179 PF07755 DUF1611: Protein of u 68.5 7.8 0.00017 36.2 4.4 109 42-151 111-252 (301)
180 PRK13768 GTPase; Provisional 68.3 8.2 0.00018 35.2 4.6 30 45-74 4-35 (253)
181 PLN02796 D-glycerate 3-kinase 68.3 7.9 0.00017 36.9 4.5 34 43-76 100-135 (347)
182 PRK11889 flhF flagellar biosyn 68.0 9.7 0.00021 37.2 5.1 34 44-77 242-277 (436)
183 TIGR00379 cobB cobyrinic acid 67.5 7.3 0.00016 38.7 4.4 26 49-74 7-33 (449)
184 PRK14491 putative bifunctional 66.5 8.6 0.00019 39.7 4.8 36 42-77 9-46 (597)
185 PLN02924 thymidylate kinase 66.5 9.3 0.0002 34.0 4.4 32 42-73 15-48 (220)
186 PLN02348 phosphoribulokinase 66.5 7.5 0.00016 37.7 4.0 28 42-69 48-77 (395)
187 PF01935 DUF87: Domain of unkn 66.3 7.5 0.00016 34.5 3.9 45 24-72 10-55 (229)
188 PRK07933 thymidylate kinase; V 66.2 10 0.00022 33.5 4.6 30 45-74 2-33 (213)
189 COG3172 NadR Predicted ATPase/ 65.9 6.2 0.00013 33.2 2.9 25 43-67 8-34 (187)
190 PRK14722 flhF flagellar biosyn 65.7 5.1 0.00011 38.7 2.7 34 43-76 137-174 (374)
191 PF08433 KTI12: Chromatin asso 65.4 9.2 0.0002 35.2 4.3 30 43-72 1-32 (270)
192 cd02024 NRK1 Nicotinamide ribo 64.8 5.1 0.00011 34.7 2.4 21 45-65 1-23 (187)
193 PRK07429 phosphoribulokinase; 64.8 7 0.00015 37.1 3.5 27 42-68 7-35 (327)
194 COG4088 Predicted nucleotide k 64.2 8.7 0.00019 33.9 3.6 30 43-72 1-32 (261)
195 PRK14733 coaE dephospho-CoA ki 63.9 6.8 0.00015 34.5 3.0 26 44-72 7-34 (204)
196 COG0125 Tmk Thymidylate kinase 63.1 13 0.00029 32.8 4.7 32 43-74 3-36 (208)
197 cd00477 FTHFS Formyltetrahydro 63.1 12 0.00026 37.4 4.8 32 42-73 37-74 (524)
198 TIGR00347 bioD dethiobiotin sy 62.3 9.4 0.0002 32.0 3.5 25 51-75 8-32 (166)
199 PF02374 ArsA_ATPase: Anion-tr 61.9 13 0.00027 35.0 4.6 36 44-79 2-39 (305)
200 TIGR02880 cbbX_cfxQ probable R 61.8 7.3 0.00016 36.2 3.0 26 45-71 63-88 (284)
201 TIGR00235 udk uridine kinase. 61.7 8.8 0.00019 33.6 3.4 27 41-67 4-32 (207)
202 TIGR03499 FlhF flagellar biosy 61.5 14 0.0003 34.2 4.8 34 43-76 194-231 (282)
203 PF00142 Fer4_NifH: 4Fe-4S iro 61.4 9.9 0.00021 34.8 3.6 27 50-76 9-35 (273)
204 PRK06995 flhF flagellar biosyn 61.2 14 0.0003 37.1 4.9 32 43-74 256-291 (484)
205 KOG3354 Gluconate kinase [Carb 60.8 6.9 0.00015 32.8 2.3 21 45-66 17-37 (191)
206 cd02026 PRK Phosphoribulokinas 60.2 8.2 0.00018 35.6 3.0 25 45-69 1-27 (273)
207 TIGR03815 CpaE_hom_Actino heli 60.2 10 0.00023 35.7 3.8 61 14-74 53-127 (322)
208 PRK12726 flagellar biosynthesi 60.0 17 0.00036 35.4 5.0 36 42-77 205-242 (407)
209 PRK13886 conjugal transfer pro 59.5 11 0.00024 34.0 3.6 27 48-74 10-36 (241)
210 PF01558 POR: Pyruvate ferredo 59.3 1.1E+02 0.0023 25.8 11.6 150 53-252 4-153 (173)
211 TIGR00959 ffh signal recogniti 58.5 17 0.00037 35.9 5.0 35 43-77 99-136 (428)
212 PRK14734 coaE dephospho-CoA ki 58.1 10 0.00022 33.1 3.1 25 44-72 2-28 (200)
213 PLN02422 dephospho-CoA kinase 57.9 10 0.00022 34.1 3.1 26 44-73 2-29 (232)
214 cd02022 DPCK Dephospho-coenzym 57.5 13 0.00027 31.8 3.5 28 45-76 1-30 (179)
215 PRK13505 formate--tetrahydrofo 57.4 18 0.0004 36.6 5.0 33 42-74 54-92 (557)
216 cd02038 FleN-like FleN is a me 57.0 15 0.00032 29.9 3.7 50 46-109 5-55 (139)
217 PRK00081 coaE dephospho-CoA ki 57.0 11 0.00023 32.7 3.1 25 44-72 3-29 (194)
218 PF03029 ATP_bind_1: Conserved 56.9 9.5 0.00021 34.4 2.7 22 52-73 7-28 (238)
219 COG0455 flhG Antiactivator of 56.8 18 0.00038 33.2 4.5 29 44-72 3-35 (262)
220 PLN00124 succinyl-CoA ligase [ 56.1 69 0.0015 31.6 8.7 36 305-342 385-420 (422)
221 COG1855 ATPase (PilT family) [ 56.0 8.4 0.00018 37.9 2.3 78 41-129 261-340 (604)
222 PRK13973 thymidylate kinase; P 56.0 20 0.00044 31.5 4.7 31 44-74 4-36 (213)
223 COG3265 GntK Gluconate kinase 55.8 6.9 0.00015 32.5 1.5 21 47-68 2-22 (161)
224 PRK14730 coaE dephospho-CoA ki 55.7 13 0.00029 32.3 3.4 26 44-72 2-29 (195)
225 PRK06547 hypothetical protein; 55.7 20 0.00042 30.6 4.4 25 41-65 13-39 (172)
226 PRK14731 coaE dephospho-CoA ki 55.3 14 0.0003 32.4 3.5 26 43-72 5-32 (208)
227 PF05872 DUF853: Bacterial pro 55.0 9.5 0.00021 37.6 2.5 33 41-74 20-52 (502)
228 PF07931 CPT: Chloramphenicol 54.9 9.9 0.00021 32.5 2.4 23 44-66 2-26 (174)
229 cd02027 APSK Adenosine 5'-phos 54.7 20 0.00043 29.6 4.2 27 46-72 2-30 (149)
230 PF13238 AAA_18: AAA domain; P 54.2 13 0.00027 29.2 2.8 20 46-65 1-22 (129)
231 PF06418 CTP_synth_N: CTP synt 54.0 17 0.00037 33.1 3.8 31 44-74 2-36 (276)
232 COG1348 NifH Nitrogenase subun 53.9 13 0.00028 33.3 3.0 32 45-76 3-36 (278)
233 PRK05541 adenylylsulfate kinas 53.4 28 0.00061 29.4 5.0 31 42-72 6-38 (176)
234 PRK13506 formate--tetrahydrofo 53.3 18 0.00039 36.6 4.2 31 42-72 53-89 (578)
235 PRK04040 adenylate kinase; Pro 53.2 17 0.00037 31.4 3.7 29 44-73 3-33 (188)
236 PRK14732 coaE dephospho-CoA ki 53.1 11 0.00023 32.9 2.4 19 45-63 1-21 (196)
237 PLN02974 adenosylmethionine-8- 52.7 20 0.00042 38.6 4.7 33 41-73 25-60 (817)
238 PRK01184 hypothetical protein; 51.9 20 0.00044 30.5 3.9 26 44-73 2-29 (184)
239 cd01130 VirB11-like_ATPase Typ 51.9 19 0.0004 31.0 3.7 33 33-66 16-50 (186)
240 PF02492 cobW: CobW/HypB/UreG, 51.9 22 0.00049 30.2 4.2 33 44-77 1-35 (178)
241 KOG2749 mRNA cleavage and poly 51.8 20 0.00044 34.2 4.0 31 42-72 103-134 (415)
242 KOG0780 Signal recognition par 51.4 19 0.00042 34.7 3.9 33 43-75 101-135 (483)
243 PRK13896 cobyrinic acid a,c-di 51.3 22 0.00048 35.1 4.5 29 45-73 3-34 (433)
244 TIGR03574 selen_PSTK L-seryl-t 51.2 24 0.00051 31.9 4.4 28 46-73 2-31 (249)
245 TIGR00152 dephospho-CoA kinase 51.2 12 0.00027 32.1 2.5 21 45-65 1-23 (188)
246 COG0003 ArsA Predicted ATPase 51.1 25 0.00054 33.3 4.6 106 44-151 3-119 (322)
247 cd05212 NAD_bind_m-THF_DH_Cycl 51.0 79 0.0017 25.9 7.1 68 276-355 8-82 (140)
248 TIGR01005 eps_transp_fam exopo 50.6 28 0.00061 37.1 5.5 35 41-75 544-581 (754)
249 cd02035 ArsA ArsA ATPase funct 50.5 18 0.00039 31.9 3.5 28 49-76 7-34 (217)
250 PRK06761 hypothetical protein; 50.4 14 0.00031 34.2 2.9 29 44-72 4-34 (282)
251 PF00580 UvrD-helicase: UvrD/R 50.4 16 0.00034 33.7 3.3 30 41-71 14-44 (315)
252 COG2019 AdkA Archaeal adenylat 49.9 18 0.00038 30.8 3.0 23 43-65 4-28 (189)
253 cd00550 ArsA_ATPase Oxyanion-t 49.7 18 0.00038 32.9 3.4 28 50-77 9-36 (254)
254 PRK03333 coaE dephospho-CoA ki 49.5 15 0.00033 35.8 3.1 20 44-63 2-23 (395)
255 PF13604 AAA_30: AAA domain; P 49.5 29 0.00063 30.1 4.6 34 43-76 18-53 (196)
256 TIGR01360 aden_kin_iso1 adenyl 49.5 24 0.00053 29.8 4.1 29 42-73 2-32 (188)
257 COG1737 RpiR Transcriptional r 49.4 48 0.001 30.6 6.2 69 279-351 116-184 (281)
258 TIGR02782 TrbB_P P-type conjug 49.0 37 0.00079 31.8 5.4 35 32-67 122-158 (299)
259 COG4555 NatA ABC-type Na+ tran 48.9 22 0.00047 31.4 3.5 28 41-68 26-55 (245)
260 PRK14490 putative bifunctional 47.3 27 0.00058 33.7 4.4 34 42-76 4-39 (369)
261 PRK05632 phosphate acetyltrans 47.0 26 0.00056 37.0 4.5 30 45-74 4-36 (684)
262 PRK06762 hypothetical protein; 46.9 22 0.00047 29.7 3.3 22 44-65 3-26 (166)
263 COG1428 Deoxynucleoside kinase 46.6 19 0.00041 31.7 2.9 24 43-66 4-29 (216)
264 PF12846 AAA_10: AAA-like doma 46.4 21 0.00045 32.7 3.4 30 44-74 5-34 (304)
265 cd03113 CTGs CTP synthetase (C 46.1 35 0.00076 30.9 4.5 30 45-74 2-35 (255)
266 PF01268 FTHFS: Formate--tetra 45.8 28 0.00062 35.2 4.3 58 16-73 15-90 (557)
267 PRK12724 flagellar biosynthesi 45.5 35 0.00075 33.6 4.8 34 43-76 223-259 (432)
268 PRK08099 bifunctional DNA-bind 45.3 21 0.00047 34.9 3.4 24 42-65 218-243 (399)
269 COG0504 PyrG CTP synthase (UTP 45.2 32 0.00069 34.2 4.4 31 44-74 2-36 (533)
270 PRK14723 flhF flagellar biosyn 45.1 31 0.00068 36.6 4.7 34 43-76 185-222 (767)
271 PF02223 Thymidylate_kin: Thym 44.9 19 0.00041 30.7 2.7 21 52-72 7-27 (186)
272 PRK00300 gmk guanylate kinase; 44.5 22 0.00049 30.7 3.1 26 41-66 3-30 (205)
273 PRK13507 formate--tetrahydrofo 44.2 29 0.00063 35.2 4.0 32 42-73 62-99 (587)
274 cd03243 ABC_MutS_homologs The 44.1 24 0.00053 30.6 3.3 22 43-64 29-52 (202)
275 PRK06217 hypothetical protein; 43.7 24 0.00051 30.1 3.1 21 45-65 3-25 (183)
276 KOG1324 Dihydrofolate reductas 43.6 26 0.00055 30.0 3.0 14 250-263 61-74 (190)
277 TIGR00150 HI0065_YjeE ATPase, 43.0 43 0.00094 27.2 4.3 30 35-65 15-46 (133)
278 cd03281 ABC_MSH5_euk MutS5 hom 42.8 35 0.00075 30.1 4.0 29 44-72 30-62 (213)
279 PRK00131 aroK shikimate kinase 42.5 33 0.00071 28.5 3.8 24 42-65 3-28 (175)
280 TIGR01033 DNA-binding regulato 42.3 78 0.0017 28.6 6.2 56 233-290 54-116 (238)
281 PLN02318 phosphoribulokinase/u 41.6 27 0.00059 36.0 3.4 25 42-66 64-90 (656)
282 PRK11914 diacylglycerol kinase 40.9 62 0.0013 30.2 5.7 70 293-362 9-82 (306)
283 PRK06278 cobyrinic acid a,c-di 40.8 32 0.00069 34.5 3.8 27 42-68 237-266 (476)
284 cd00227 CPT Chloramphenicol (C 40.3 35 0.00075 28.8 3.6 23 44-66 3-27 (175)
285 cd01129 PulE-GspE PulE/GspE Th 39.6 54 0.0012 30.0 4.9 28 34-61 71-100 (264)
286 COG3910 Predicted ATPase [Gene 39.5 25 0.00054 30.6 2.4 49 13-64 10-60 (233)
287 PLN02759 Formate--tetrahydrofo 39.5 45 0.00097 34.2 4.5 32 42-73 68-106 (637)
288 PRK12727 flagellar biosynthesi 39.2 68 0.0015 32.7 5.8 35 42-76 349-387 (559)
289 cd01131 PilT Pilus retraction 38.9 44 0.00096 29.0 4.1 22 45-66 3-26 (198)
290 PRK05703 flhF flagellar biosyn 38.8 50 0.0011 32.6 4.8 35 43-77 221-259 (424)
291 PRK05537 bifunctional sulfate 38.7 79 0.0017 32.6 6.4 55 16-70 356-422 (568)
292 COG1832 Predicted CoA-binding 38.5 38 0.00082 27.7 3.2 33 41-73 14-47 (140)
293 COG2109 BtuR ATP:corrinoid ade 38.3 49 0.0011 28.7 4.0 32 45-77 31-64 (198)
294 PRK10463 hydrogenase nickel in 37.5 70 0.0015 29.8 5.3 41 41-81 102-144 (290)
295 PRK04182 cytidylate kinase; Pr 37.2 33 0.00071 28.8 2.9 21 45-65 2-24 (180)
296 TIGR00337 PyrG CTP synthase. C 37.0 50 0.0011 33.4 4.5 31 44-74 2-36 (525)
297 cd03280 ABC_MutS2 MutS2 homolo 37.0 47 0.001 28.7 4.0 27 44-70 29-59 (200)
298 KOG3062 RNA polymerase II elon 36.9 45 0.00098 29.9 3.7 29 43-71 1-31 (281)
299 TIGR02322 phosphon_PhnN phosph 36.8 35 0.00076 28.8 3.1 24 44-67 2-27 (179)
300 TIGR01420 pilT_fam pilus retra 36.8 38 0.00082 32.3 3.6 32 34-65 113-146 (343)
301 PRK04296 thymidine kinase; Pro 36.2 57 0.0012 28.1 4.3 32 44-75 3-36 (190)
302 PRK13975 thymidylate kinase; P 36.1 39 0.00085 28.9 3.3 24 44-67 3-28 (196)
303 PF13788 DUF4180: Domain of un 36.1 62 0.0013 25.5 4.0 42 295-337 71-112 (113)
304 cd04824 eu_ALAD_PBGS_cysteine_ 35.9 25 0.00055 32.8 2.1 39 328-366 221-260 (320)
305 PRK05380 pyrG CTP synthetase; 35.5 54 0.0012 33.3 4.4 32 43-74 2-37 (533)
306 PRK07261 topology modulation p 35.4 41 0.00089 28.4 3.2 20 46-65 3-24 (171)
307 PLN02327 CTP synthase 35.4 54 0.0012 33.4 4.4 31 44-74 2-36 (557)
308 PRK14528 adenylate kinase; Pro 35.3 60 0.0013 27.8 4.3 27 44-73 2-30 (186)
309 PF06048 DUF927: Domain of unk 35.1 50 0.0011 30.6 4.0 30 37-66 187-218 (286)
310 COG4586 ABC-type uncharacteriz 34.8 41 0.00089 31.1 3.2 64 13-76 17-85 (325)
311 PF00005 ABC_tran: ABC transpo 34.8 37 0.0008 27.0 2.7 25 42-66 10-36 (137)
312 PF08303 tRNA_lig_kinase: tRNA 34.7 23 0.00051 29.9 1.5 18 52-69 10-27 (168)
313 cd03223 ABCD_peroxisomal_ALDP 34.6 44 0.00095 28.0 3.2 25 42-66 26-52 (166)
314 PHA02575 1 deoxynucleoside mon 34.5 38 0.00083 30.2 2.9 24 45-72 2-27 (227)
315 COG1131 CcmA ABC-type multidru 34.3 31 0.00068 32.1 2.5 26 42-67 30-57 (293)
316 PRK06731 flhF flagellar biosyn 34.0 74 0.0016 29.3 4.9 37 42-78 74-112 (270)
317 PRK13947 shikimate kinase; Pro 34.0 47 0.001 27.7 3.4 21 45-65 3-25 (171)
318 PF00490 ALAD: Delta-aminolevu 33.8 27 0.00058 32.8 1.9 36 328-363 226-262 (324)
319 TIGR01313 therm_gnt_kin carboh 33.5 31 0.00067 28.6 2.1 19 47-65 2-22 (163)
320 PRK13477 bifunctional pantoate 33.4 52 0.0011 33.4 4.0 24 42-65 283-308 (512)
321 COG0283 Cmk Cytidylate kinase 33.2 43 0.00093 29.7 3.0 24 44-67 5-30 (222)
322 smart00053 DYNc Dynamin, GTPas 33.2 34 0.00074 30.9 2.5 23 42-64 25-49 (240)
323 PRK08118 topology modulation p 33.0 51 0.0011 27.7 3.4 22 45-66 3-26 (167)
324 PRK13537 nodulation ABC transp 32.8 33 0.00071 32.2 2.4 25 42-66 32-58 (306)
325 TIGR02173 cyt_kin_arch cytidyl 32.7 44 0.00094 27.7 3.0 21 45-65 2-24 (171)
326 PRK09283 delta-aminolevulinic 32.6 29 0.00062 32.6 1.9 37 328-364 224-261 (323)
327 cd00384 ALAD_PBGS Porphobilino 32.4 31 0.00068 32.2 2.1 37 328-364 216-253 (314)
328 KOG1534 Putative transcription 32.2 47 0.001 29.5 3.0 30 44-74 7-36 (273)
329 PTZ00386 formyl tetrahydrofola 32.1 53 0.0012 33.6 3.8 32 42-73 67-105 (625)
330 PRK14721 flhF flagellar biosyn 32.1 74 0.0016 31.4 4.7 24 42-65 190-215 (420)
331 PRK13974 thymidylate kinase; P 32.0 65 0.0014 28.3 4.0 27 44-70 4-32 (212)
332 PRK13976 thymidylate kinase; P 31.9 79 0.0017 27.8 4.5 28 45-72 2-33 (209)
333 TIGR01613 primase_Cterm phage/ 31.7 32 0.0007 32.1 2.1 21 49-69 84-104 (304)
334 cd03255 ABC_MJ0796_Lo1CDE_FtsE 31.6 41 0.00088 29.4 2.7 25 42-66 29-55 (218)
335 cd03229 ABC_Class3 This class 31.6 39 0.00085 28.6 2.5 25 42-66 25-51 (178)
336 PRK13695 putative NTPase; Prov 31.5 65 0.0014 27.1 3.9 28 45-72 2-31 (174)
337 PRK12378 hypothetical protein; 31.4 2.1E+02 0.0045 25.8 7.1 55 233-289 52-112 (235)
338 PRK13384 delta-aminolevulinic 31.3 31 0.00067 32.3 1.9 37 328-364 225-262 (322)
339 PRK00110 hypothetical protein; 31.0 1.5E+02 0.0033 26.8 6.2 59 227-289 50-115 (245)
340 PF01709 Transcrip_reg: Transc 30.9 97 0.0021 27.9 4.9 60 227-290 46-112 (234)
341 PRK13833 conjugal transfer pro 30.9 79 0.0017 30.0 4.6 32 33-65 135-168 (323)
342 COG2805 PilT Tfp pilus assembl 30.8 85 0.0018 29.5 4.5 37 33-69 115-154 (353)
343 COG2759 MIS1 Formyltetrahydrof 30.4 54 0.0012 32.4 3.3 57 15-72 12-87 (554)
344 cd04823 ALAD_PBGS_aspartate_ri 30.1 37 0.00081 31.8 2.2 37 328-364 221-258 (320)
345 COG1245 Predicted ATPase, RNas 30.1 51 0.0011 32.8 3.1 27 40-66 97-125 (591)
346 TIGR02533 type_II_gspE general 30.0 73 0.0016 32.1 4.4 27 34-60 233-261 (486)
347 cd03278 ABC_SMC_barmotin Barmo 29.7 53 0.0012 28.5 3.1 22 45-66 24-47 (197)
348 PF00009 GTP_EFTU: Elongation 29.6 46 0.001 28.4 2.6 24 42-65 2-27 (188)
349 TIGR00017 cmk cytidylate kinas 29.3 59 0.0013 28.8 3.3 22 44-65 3-26 (217)
350 COG0045 SucC Succinyl-CoA synt 29.3 3.7E+02 0.0079 26.1 8.6 75 267-343 281-385 (387)
351 PRK00023 cmk cytidylate kinase 29.3 59 0.0013 28.9 3.3 23 43-65 4-28 (225)
352 KOG0460 Mitochondrial translat 29.2 38 0.00083 32.2 2.1 21 51-71 64-84 (449)
353 cd03274 ABC_SMC4_euk Eukaryoti 28.8 62 0.0013 28.5 3.3 22 44-65 26-49 (212)
354 cd03226 ABC_cobalt_CbiO_domain 28.6 58 0.0013 28.2 3.1 25 42-66 25-51 (205)
355 PRK08154 anaerobic benzoate ca 28.6 81 0.0018 29.6 4.3 25 41-65 131-157 (309)
356 PF00004 AAA: ATPase family as 28.5 54 0.0012 25.5 2.7 21 46-66 1-23 (132)
357 cd03294 ABC_Pro_Gly_Bertaine T 28.4 45 0.00098 30.5 2.5 25 42-66 49-75 (269)
358 PRK10744 pstB phosphate transp 27.9 50 0.0011 29.9 2.7 25 42-66 38-64 (260)
359 cd03259 ABC_Carb_Solutes_like 27.9 63 0.0014 28.1 3.2 25 42-66 25-51 (213)
360 KOG3220 Similar to bacterial d 27.7 59 0.0013 28.6 2.8 25 44-72 2-28 (225)
361 KOG0781 Signal recognition par 27.6 67 0.0014 32.1 3.5 44 31-74 362-411 (587)
362 cd04236 AAK_NAGS-Urea AAK_NAGS 27.6 1.2E+02 0.0026 27.9 5.1 64 234-302 8-77 (271)
363 PRK06851 hypothetical protein; 27.5 81 0.0018 30.5 4.1 31 42-72 29-61 (367)
364 PRK13946 shikimate kinase; Pro 27.4 67 0.0015 27.4 3.3 22 44-65 11-34 (184)
365 PRK13540 cytochrome c biogenes 27.3 67 0.0014 27.7 3.3 24 42-65 26-51 (200)
366 COG1474 CDC6 Cdc6-related prot 27.0 45 0.00098 32.2 2.3 24 46-69 45-70 (366)
367 TIGR01166 cbiO cobalt transpor 27.0 51 0.0011 28.1 2.5 25 42-66 17-43 (190)
368 PF15517 TBPIP_N: TBP-interact 26.9 27 0.00059 26.0 0.6 34 324-359 42-76 (99)
369 PRK03731 aroL shikimate kinase 26.9 72 0.0016 26.6 3.3 21 45-65 4-26 (171)
370 PRK14188 bifunctional 5,10-met 26.8 2.6E+02 0.0057 26.1 7.2 31 276-306 138-171 (296)
371 KOG2004 Mitochondrial ATP-depe 26.5 70 0.0015 33.7 3.5 36 42-77 437-474 (906)
372 COG1341 Predicted GTPase or GT 26.5 1.1E+02 0.0024 29.8 4.7 33 42-74 72-106 (398)
373 KOG1546 Metacaspase involved i 26.3 66 0.0014 30.3 3.0 28 329-356 122-150 (362)
374 cd02020 CMPK Cytidine monophos 26.2 63 0.0014 25.9 2.7 21 45-65 1-23 (147)
375 cd01673 dNK Deoxyribonucleosid 26.2 55 0.0012 28.0 2.5 20 46-65 2-23 (193)
376 PRK14709 hypothetical protein; 26.2 46 0.001 33.3 2.3 20 49-68 213-232 (469)
377 PF03266 NTPase_1: NTPase; In 26.1 98 0.0021 26.1 4.0 27 46-72 2-30 (168)
378 PRK15177 Vi polysaccharide exp 26.0 48 0.001 29.1 2.1 25 42-66 12-38 (213)
379 cd03110 Fer4_NifH_child This p 25.9 64 0.0014 27.2 2.8 17 49-65 8-24 (179)
380 COG4133 CcmA ABC-type transpor 25.9 69 0.0015 27.9 2.9 28 42-69 27-56 (209)
381 TIGR03702 lip_kinase_YegS lipi 25.9 66 0.0014 29.8 3.2 15 346-360 54-68 (293)
382 cd03222 ABC_RNaseL_inhibitor T 25.8 63 0.0014 27.6 2.7 26 42-67 24-51 (177)
383 PRK08356 hypothetical protein; 25.8 1E+02 0.0023 26.4 4.2 28 43-74 5-34 (195)
384 PRK08534 pyruvate ferredoxin o 25.7 4.1E+02 0.009 22.5 12.7 94 45-164 3-98 (181)
385 COG4152 ABC-type uncharacteriz 25.5 45 0.00097 30.4 1.8 40 42-84 27-68 (300)
386 cd03232 ABC_PDR_domain2 The pl 25.3 70 0.0015 27.4 3.0 23 42-64 32-56 (192)
387 PRK13764 ATPase; Provisional 25.2 1.3E+02 0.0028 31.2 5.2 31 42-72 256-288 (602)
388 cd02021 GntK Gluconate kinase 25.0 58 0.0013 26.4 2.3 20 46-65 2-23 (150)
389 PRK10908 cell division protein 25.0 76 0.0017 27.8 3.2 25 42-66 27-53 (222)
390 COG0466 Lon ATP-dependent Lon 24.7 72 0.0016 33.5 3.3 36 42-77 349-386 (782)
391 PRK11248 tauB taurine transpor 24.6 62 0.0013 29.3 2.6 25 42-66 26-52 (255)
392 PRK09825 idnK D-gluconate kina 24.6 87 0.0019 26.6 3.4 23 44-66 4-28 (176)
393 PRK14235 phosphate transporter 24.5 71 0.0015 29.1 3.0 25 42-66 44-70 (267)
394 cd03256 ABC_PhnC_transporter A 24.5 67 0.0014 28.5 2.8 25 42-66 26-52 (241)
395 cd03221 ABCF_EF-3 ABCF_EF-3 E 24.5 79 0.0017 25.7 3.0 25 42-66 25-51 (144)
396 KOG1370 S-adenosylhomocysteine 24.4 3.4E+02 0.0074 25.6 7.2 24 343-373 268-291 (434)
397 cd03260 ABC_PstB_phosphate_tra 24.4 81 0.0018 27.7 3.3 24 42-65 25-50 (227)
398 cd01120 RecA-like_NTPases RecA 24.4 1.1E+02 0.0023 24.7 3.9 31 46-76 2-34 (165)
399 PRK00625 shikimate kinase; Pro 24.4 78 0.0017 26.9 3.0 20 46-65 3-24 (173)
400 cd03263 ABC_subfamily_A The AB 24.4 64 0.0014 28.2 2.6 25 42-66 27-53 (220)
401 PRK13949 shikimate kinase; Pro 24.4 83 0.0018 26.5 3.2 22 45-66 3-26 (169)
402 cd03273 ABC_SMC2_euk Eukaryoti 24.2 88 0.0019 28.1 3.6 26 42-67 24-51 (251)
403 PF13476 AAA_23: AAA domain; P 24.2 79 0.0017 26.7 3.1 26 43-68 19-46 (202)
404 PRK10247 putative ABC transpor 24.2 79 0.0017 27.9 3.2 25 42-66 32-58 (225)
405 TIGR02524 dot_icm_DotB Dot/Icm 24.1 88 0.0019 30.1 3.7 25 42-66 133-159 (358)
406 TIGR02667 moaB_proteo molybden 24.1 1.5E+02 0.0032 24.9 4.7 45 307-351 22-70 (163)
407 PRK09493 glnQ glutamine ABC tr 24.1 79 0.0017 28.1 3.2 25 42-66 26-52 (240)
408 cd03282 ABC_MSH4_euk MutS4 hom 24.0 99 0.0021 27.0 3.7 29 42-70 28-60 (204)
409 PRK13652 cbiO cobalt transport 24.0 62 0.0013 29.7 2.5 25 42-66 29-55 (277)
410 PF13173 AAA_14: AAA domain 23.9 94 0.002 24.6 3.3 23 43-65 2-26 (128)
411 TIGR03263 guanyl_kin guanylate 23.8 70 0.0015 26.8 2.7 22 44-65 2-25 (180)
412 PRK13894 conjugal transfer ATP 23.8 1.1E+02 0.0025 28.8 4.3 30 33-63 139-170 (319)
413 cd03240 ABC_Rad50 The catalyti 23.8 85 0.0018 27.3 3.3 23 44-66 23-47 (204)
414 TIGR03608 L_ocin_972_ABC putat 23.7 66 0.0014 27.8 2.6 25 42-66 23-49 (206)
415 PRK13538 cytochrome c biogenes 23.6 66 0.0014 27.8 2.6 25 42-66 26-52 (204)
416 PRK12338 hypothetical protein; 23.6 82 0.0018 29.8 3.3 23 43-65 4-28 (319)
417 PF14207 DpnD-PcfM: DpnD/PcfM- 23.6 90 0.0019 20.5 2.5 22 328-349 18-39 (48)
418 cd03272 ABC_SMC3_euk Eukaryoti 23.6 78 0.0017 28.2 3.1 24 43-66 23-48 (243)
419 cd03293 ABC_NrtD_SsuB_transpor 23.6 59 0.0013 28.5 2.2 25 42-66 29-55 (220)
420 cd00009 AAA The AAA+ (ATPases 23.5 2.3E+02 0.005 21.8 5.7 31 42-72 18-50 (151)
421 TIGR02770 nickel_nikD nickel i 23.4 55 0.0012 29.0 2.0 25 42-66 11-37 (230)
422 COG2804 PulE Type II secretory 23.4 1.6E+02 0.0035 29.6 5.3 33 35-67 250-284 (500)
423 PRK10584 putative ABC transpor 23.3 71 0.0015 28.2 2.7 25 42-66 35-61 (228)
424 TIGR01650 PD_CobS cobaltochela 23.2 65 0.0014 30.6 2.5 23 45-67 66-90 (327)
425 TIGR01526 nadR_NMN_Atrans nico 23.2 85 0.0018 29.7 3.3 23 43-65 162-186 (325)
426 PRK13650 cbiO cobalt transport 23.2 68 0.0015 29.5 2.7 25 42-66 32-58 (279)
427 PF05582 Peptidase_U57: YabG p 23.2 1.4E+02 0.003 27.6 4.5 46 329-377 140-192 (287)
428 PRK03839 putative kinase; Prov 23.1 90 0.002 26.3 3.3 20 46-65 3-24 (180)
429 PRK10436 hypothetical protein; 23.1 1.1E+02 0.0025 30.5 4.3 29 35-63 210-241 (462)
430 PF02562 PhoH: PhoH-like prote 23.1 91 0.002 27.4 3.2 37 267-303 120-156 (205)
431 cd03285 ABC_MSH2_euk MutS2 hom 23.0 97 0.0021 27.5 3.5 28 42-69 29-60 (222)
432 cd03231 ABC_CcmA_heme_exporter 23.0 68 0.0015 27.7 2.5 25 42-66 25-51 (201)
433 PF05729 NACHT: NACHT domain 22.8 1.1E+02 0.0025 24.7 3.8 26 45-70 2-29 (166)
434 PRK05416 glmZ(sRNA)-inactivati 22.7 90 0.0019 29.0 3.3 26 42-71 5-32 (288)
435 PRK13948 shikimate kinase; Pro 22.6 1E+02 0.0022 26.4 3.5 24 42-65 9-34 (182)
436 cd00267 ABC_ATPase ABC (ATP-bi 22.6 75 0.0016 26.1 2.6 25 42-66 24-50 (157)
437 cd03265 ABC_DrrA DrrA is the A 22.6 91 0.002 27.3 3.3 25 42-66 25-51 (220)
438 cd03238 ABC_UvrA The excision 22.5 92 0.002 26.5 3.1 20 42-61 20-41 (176)
439 TIGR01184 ntrCD nitrate transp 22.4 72 0.0016 28.3 2.6 25 42-66 10-36 (230)
440 cd03237 ABC_RNaseL_inhibitor_d 22.3 92 0.002 28.1 3.3 25 42-66 24-50 (246)
441 TIGR02855 spore_yabG sporulati 22.3 98 0.0021 28.4 3.3 46 329-377 139-191 (283)
442 cd03269 ABC_putative_ATPase Th 22.2 93 0.002 27.0 3.2 24 42-65 25-50 (210)
443 PRK11439 pphA serine/threonine 22.2 5.3E+02 0.012 22.5 8.5 50 268-318 18-70 (218)
444 PRK06835 DNA replication prote 22.2 93 0.002 29.6 3.4 31 44-74 184-216 (329)
445 TIGR02673 FtsE cell division A 22.1 73 0.0016 27.7 2.6 25 42-66 27-53 (214)
446 PRK08533 flagellar accessory p 22.1 2E+02 0.0044 25.5 5.4 35 42-77 23-60 (230)
447 PRK14251 phosphate ABC transpo 22.1 74 0.0016 28.5 2.6 25 42-66 29-55 (251)
448 cd03225 ABC_cobalt_CbiO_domain 22.0 81 0.0018 27.3 2.8 25 42-66 26-52 (211)
449 cd03283 ABC_MutS-like MutS-lik 22.0 1.3E+02 0.0028 26.2 4.0 27 44-70 26-56 (199)
450 cd03253 ABCC_ATM1_transporter 21.9 89 0.0019 27.6 3.1 25 42-66 26-52 (236)
451 PRK14530 adenylate kinase; Pro 21.9 99 0.0021 27.0 3.3 26 44-72 4-31 (215)
452 TIGR03864 PQQ_ABC_ATP ABC tran 21.9 94 0.002 27.6 3.2 25 42-66 26-52 (236)
453 PF01202 SKI: Shikimate kinase 21.8 67 0.0015 26.6 2.1 16 52-67 3-18 (158)
454 cd03300 ABC_PotA_N PotA is an 21.5 80 0.0017 28.0 2.7 25 42-66 25-51 (232)
455 TIGR02211 LolD_lipo_ex lipopro 21.5 78 0.0017 27.7 2.6 25 42-66 30-56 (221)
456 TIGR00101 ureG urease accessor 21.5 1.4E+02 0.003 26.0 4.1 23 45-67 3-27 (199)
457 PRK14175 bifunctional 5,10-met 21.5 3.8E+02 0.0082 24.9 7.1 68 213-301 96-166 (286)
458 PRK13900 type IV secretion sys 21.4 88 0.0019 29.8 3.0 30 34-64 152-183 (332)
459 PF11212 DUF2999: Protein of u 21.3 1.3E+02 0.0028 21.5 3.0 27 223-251 26-52 (82)
460 KOG0447 Dynamin-like GTP bindi 21.3 86 0.0019 31.9 2.9 24 41-64 306-331 (980)
461 TIGR01288 nodI ATP-binding ABC 21.3 72 0.0016 29.7 2.4 25 42-66 29-55 (303)
462 cd01121 Sms Sms (bacterial rad 21.2 3.1E+02 0.0067 26.5 6.8 34 42-75 81-116 (372)
463 cd03250 ABCC_MRP_domain1 Domai 21.2 1E+02 0.0022 26.6 3.3 25 42-66 30-56 (204)
464 smart00382 AAA ATPases associa 21.2 87 0.0019 24.0 2.6 26 44-69 3-30 (148)
465 COG1125 OpuBA ABC-type proline 21.1 55 0.0012 30.0 1.5 26 43-68 27-54 (309)
466 PRK11153 metN DL-methionine tr 21.0 69 0.0015 30.5 2.3 25 42-66 30-56 (343)
467 cd01124 KaiC KaiC is a circadi 21.0 1.5E+02 0.0033 24.8 4.3 32 46-77 2-35 (187)
468 cd03247 ABCC_cytochrome_bd The 21.0 1.1E+02 0.0023 25.9 3.2 25 42-66 27-53 (178)
469 PF00391 PEP-utilizers: PEP-ut 21.0 1.9E+02 0.004 20.9 4.1 41 12-53 40-80 (80)
470 COG0050 TufB GTPases - transla 21.0 70 0.0015 29.9 2.1 26 45-70 14-41 (394)
471 cd03252 ABCC_Hemolysin The ABC 20.9 93 0.002 27.6 3.0 25 42-66 27-53 (237)
472 TIGR02315 ABC_phnC phosphonate 20.9 86 0.0019 27.9 2.8 25 42-66 27-53 (243)
473 cd03213 ABCG_EPDR ABCG transpo 20.9 1E+02 0.0022 26.5 3.1 24 42-65 34-59 (194)
474 COG1066 Sms Predicted ATP-depe 20.8 4.3E+02 0.0094 26.1 7.5 114 43-160 93-213 (456)
475 PRK11054 helD DNA helicase IV; 20.8 1E+02 0.0022 32.5 3.6 27 42-69 211-238 (684)
476 PRK11629 lolD lipoprotein tran 20.8 77 0.0017 28.1 2.4 25 42-66 34-60 (233)
477 cd03258 ABC_MetN_methionine_tr 20.8 88 0.0019 27.6 2.8 25 42-66 30-56 (233)
478 cd00464 SK Shikimate kinase (S 20.7 1E+02 0.0022 24.9 3.0 20 46-65 2-23 (154)
479 cd03267 ABC_NatA_like Similar 20.7 1E+02 0.0022 27.5 3.1 25 42-66 46-72 (236)
480 PF02882 THF_DHG_CYH_C: Tetrah 20.7 2.3E+02 0.0051 23.8 5.1 70 276-357 16-92 (160)
481 cd03228 ABCC_MRP_Like The MRP 20.6 99 0.0021 25.9 3.0 26 42-67 27-54 (171)
482 cd03216 ABC_Carb_Monos_I This 20.6 1.1E+02 0.0023 25.5 3.1 25 42-66 25-51 (163)
483 TIGR02788 VirB11 P-type DNA tr 20.6 1E+02 0.0022 28.9 3.3 25 41-65 142-168 (308)
484 TIGR00960 3a0501s02 Type II (G 20.6 81 0.0018 27.5 2.5 25 42-66 28-54 (216)
485 TIGR01188 drrA daunorubicin re 20.6 75 0.0016 29.6 2.4 25 42-66 18-44 (302)
486 TIGR01470 cysG_Nterm siroheme 20.6 34 0.00074 30.0 0.0 64 4-68 72-143 (205)
487 PRK11264 putative amino-acid A 20.5 84 0.0018 28.1 2.6 25 42-66 28-54 (250)
488 PRK11022 dppD dipeptide transp 20.5 68 0.0015 30.4 2.1 25 42-66 32-58 (326)
489 cd03244 ABCC_MRP_domain2 Domai 20.5 99 0.0021 27.0 3.0 25 42-66 29-55 (221)
490 TIGR01359 UMP_CMP_kin_fam UMP- 20.4 87 0.0019 26.3 2.6 21 45-65 1-23 (183)
491 PRK14250 phosphate ABC transpo 20.4 84 0.0018 28.1 2.6 25 42-66 28-54 (241)
492 PRK14274 phosphate ABC transpo 20.3 1.1E+02 0.0024 27.6 3.4 25 42-66 37-63 (259)
493 TIGR02764 spore_ybaN_pdaB poly 20.3 5.3E+02 0.012 21.8 8.9 46 306-351 106-158 (191)
494 TIGR00972 3a0107s01c2 phosphat 20.3 1.1E+02 0.0023 27.4 3.3 25 42-66 26-52 (247)
495 cd03279 ABC_sbcCD SbcCD and ot 20.2 58 0.0013 28.5 1.5 23 43-65 28-52 (213)
496 cd03262 ABC_HisP_GlnQ_permease 20.2 90 0.002 27.0 2.7 25 42-66 25-51 (213)
497 cd03369 ABCC_NFT1 Domain 2 of 20.2 1.1E+02 0.0024 26.4 3.3 25 42-66 33-59 (207)
498 PF14516 AAA_35: AAA-like doma 20.2 2.6E+02 0.0055 26.5 5.9 34 41-74 29-64 (331)
499 cd03227 ABC_Class2 ABC-type Cl 20.1 1.3E+02 0.0027 25.1 3.5 26 44-69 22-49 (162)
500 cd03295 ABC_OpuCA_Osmoprotecti 20.1 92 0.002 27.7 2.8 25 42-66 26-52 (242)
No 1
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.1e-69 Score=514.38 Aligned_cols=351 Identities=30% Similarity=0.491 Sum_probs=303.2
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchh
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (377)
++||.||-||++||.+++|++.|+|++.+++++++.. ...|+|+|||||||||||+||+++|+++|.++.++||+|.|.
T Consensus 71 d~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~ 149 (448)
T COG0771 71 DLVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA 149 (448)
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH
Confidence 6899999999999999999999999999999999986 356799999999999999999999999999999999999998
Q ss_pred hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEe
Q 017087 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (377)
..... ...+.|+.|+|+||++++... .++|+++|||||++||||||+|+|+|..+|.+|+.++.+ ++|+|
T Consensus 150 l~~~~-------~~~~~d~~VlElSSfQL~~~~-~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin 219 (448)
T COG0771 150 LELLE-------QAEPADVYVLELSSFQLETTS-SLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVIN 219 (448)
T ss_pred HHhhc-------ccCCCCEEEEEccccccccCc-cCCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEe
Confidence 87643 134678899999999999875 489999999999999999999999999999999997654 89999
Q ss_pred CCChhhHHHHhc-cCcceeEeecCCCcc---cccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 017087 163 FGNQHLNEAIKG-HRFNLAWIGAFPGVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (377)
Q Consensus 163 ~dd~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~l 238 (377)
.||+++..+... ....+.+|+...... ...+.. ... .+ +.-+....++++|.||.+|+++|+ |+|+.+
T Consensus 220 ~dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~---~~~--~~-~~i~~~~~l~l~G~hn~~N~lAa~--a~a~~~ 291 (448)
T COG0771 220 ADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGK---LVF--KG-EKLLPADELKLPGAHNLENALAAL--ALARAL 291 (448)
T ss_pred CCcHHHhhhhhhcccceeEEEEccccccccceeecch---hcc--cc-ccccchhhcCCcchhhHHHHHHHH--HHHHHc
Confidence 999999887765 334556666432210 000000 000 01 111122368999999999999999 899999
Q ss_pred CCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC--------------
Q 017087 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304 (377)
Q Consensus 239 gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~-------------- 304 (377)
|++++.|.++|.+|+|+++|||.++ ..+|+.+|+|+.++|+.++..+|+.++ +|+++|+||.+|
T Consensus 292 gv~~e~i~~~L~~F~gl~HR~e~v~-~~~gv~f~NDSKATN~~At~~AL~~~~-~~v~lI~GG~~Kg~df~~L~~~~~~~ 369 (448)
T COG0771 292 GVPPEAILEALSSFTGLPHRLEFVG-EKDGVLFINDSKATNVDATLAALSGFD-GPVILIAGGDDKGADFSPLAEILAKV 369 (448)
T ss_pred CCCHHHHHHHHHhCCCCCcceEEEE-ecCCEEEecCCCCCCHHHHHHHHHcCC-CCEEEEECCCCCCCChhHHHHHhhhc
Confidence 9999999999999999999999998 589999999999999999999999998 799999999876
Q ss_pred ------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 305 ------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 305 ------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
+|++.+.+.+.+++.+. ....+.++++|++.+.+.+++||+||++|+|+||++|++|++||+.|+++|+.
T Consensus 370 ~~~~~~~G~~~~~i~~~l~~~~~--~~~~~~~le~Av~~a~~~a~~gd~VLLSPacASfDqf~~feeRG~~F~~~v~~ 445 (448)
T COG0771 370 IKKLVLIGEDAEKIAAALKEAGP--SLVICETLEEAVQLARELAQPGDVVLLSPACASFDQFKNFEERGEEFKELVSE 445 (448)
T ss_pred ceEEEEeCCCHHHHHHHHHhcCC--ceeecCcHHHHHHHHHHhhcCCCeEEEcccccchhhhcCHHHHHHHHHHHHHH
Confidence 78899999999987643 36678999999999999999999999999999999999999999999999874
No 2
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.2e-68 Score=526.01 Aligned_cols=353 Identities=27% Similarity=0.421 Sum_probs=292.1
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchh
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (377)
++||+||+|+++||++++|+++|+|++++++++++.. ++.++|+||||||||||++||+++|+.+|.++.++||+|.|.
T Consensus 65 d~vV~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p~ 143 (454)
T PRK01368 65 DKIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVPA 143 (454)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHHH
Confidence 6899999999999999999999999999999998887 456899999999999999999999999999999999999986
Q ss_pred hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEe
Q 017087 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (377)
... ..+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++|+.+++++.+|+|
T Consensus 144 l~~----------~~~~~~~VlE~ss~ql~~~~-~~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln 212 (454)
T PRK01368 144 LQA----------KASKDGYVLELSSFQLDLVK-TFTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVIN 212 (454)
T ss_pred hcc----------cCCCCEEEEEcCchhhcccc-ccCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 532 12247899999999987643 4899999999999999999999999999999999988888999999
Q ss_pred CCChhhHHHHhcc----CcceeEeecCCCcccccccccceEEecc-CCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHH
Q 017087 163 FGNQHLNEAIKGH----RFNLAWIGAFPGVKIDTEAKTASFEVPA-VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237 (377)
Q Consensus 163 ~dd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~ 237 (377)
.||+.+..+.... ..++++|+...............+.... ...... ..+.++++|.||++|+++|+ +++..
T Consensus 213 ~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~G~hn~~Na~aAi--a~~~~ 289 (454)
T PRK01368 213 IDNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISFK-LPFNKNLQGKHNCENIAASY--AVAKI 289 (454)
T ss_pred CCcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcceE-EEecCCCCchhhHHHHHHHH--HHHHH
Confidence 9999887765332 2356777753211000000001111110 010011 12356899999999999999 88999
Q ss_pred cCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC-------------
Q 017087 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------- 304 (377)
Q Consensus 238 lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~------------- 304 (377)
+|++.+.|+++|++|+++|||||++. ..+++.+|||+++|||+|++++++.++ ++++|+|+.++
T Consensus 290 lgi~~~~i~~~L~~F~~~~~Rle~v~-~~~gv~~i~DS~atN~~a~~~al~~~~--~i~lI~Gg~dk~~~~~~L~~~~~~ 366 (454)
T PRK01368 290 IGVEPKKILESISSFQSLPHRMQYIG-SINNISFYNDSKATNAISAVQSIKALD--NIYWLAGGIPKEGGIEEIKPYFSK 366 (454)
T ss_pred cCCCHHHHHHHHHhCCCCCcceEEEE-EECCeEEEECCCCCCHHHHHHHHHhcC--CeEEEecccCCCCCHHHHHHHHHh
Confidence 99999999999999999999999997 357899999998999999999999994 68999999865
Q ss_pred ------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCC----CEEEEcCCCcccccccChHHHHHHHHHHH
Q 017087 305 ------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG----DAIVLSPGCASFDEFRNFEHRGMVFQELA 374 (377)
Q Consensus 305 ------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~g----divli~~g~~s~~~~~~~~~rg~~f~~~v 374 (377)
.|++++++.+.+... ..+..++++++|++.+.+.+++| |+||++|+|+||++|+||++||+.|+++|
T Consensus 367 v~~v~~~g~~~~~l~~~~~~~---~~~~~~~~l~~Av~~a~~~a~~g~~~~d~VLlSPacaSfD~f~~ye~RG~~F~~~v 443 (454)
T PRK01368 367 IKKAYFYGQAKEIFANTAKNI---VDFVICDNLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKNFEERGELFIKLS 443 (454)
T ss_pred hcEEEEECcCHHHHHHHhhcC---CCEEEcCCHHHHHHHHHHHhcCCCCCCCEEEeChhhhccccccCHHHHHHHHHHHH
Confidence 577888888877542 13456789999999999999999 79999999999999999999999999999
Q ss_pred hc
Q 017087 375 FS 376 (377)
Q Consensus 375 ~~ 376 (377)
++
T Consensus 444 ~~ 445 (454)
T PRK01368 444 QK 445 (454)
T ss_pred HH
Confidence 75
No 3
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=6.1e-68 Score=522.04 Aligned_cols=350 Identities=27% Similarity=0.498 Sum_probs=293.7
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchh
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (377)
++||+||+|+++||++++|+++|+|++++++++++++ +.++|+||||||||||++||+++|+.+|.++.++||+|.|.
T Consensus 64 d~vv~sp~i~~~~p~~~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~~ 141 (433)
T TIGR01087 64 DLVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTPA 141 (433)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHHH
Confidence 6899999999999999999999999999999999887 56899999999999999999999999999999999999985
Q ss_pred hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEe
Q 017087 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (377)
..... . .+.|++|+|+|+++++... .++|+++|||||++||+|+|||+|+|+++|.++++.+++++.+|+|
T Consensus 142 ~~~~~-------~-~~~~~~V~E~~~~~l~~~~-~~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n 212 (433)
T TIGR01087 142 LEVLD-------Q-EGAELYVLELSSFQLETTE-SLRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLN 212 (433)
T ss_pred HHHHh-------c-cCCCEEEEEcChhHhcCCc-ccCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 43221 1 3568899999999887543 4799999999999999999999999999999999988888999999
Q ss_pred CCChhhHHHHhccCcceeEeecCCCcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 017087 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (377)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~ 242 (377)
.||+.+..+......++++|+...+.. ..+.....+..+......++++|.||++|+++|+ +++..+|+++
T Consensus 213 ~dd~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~~ 283 (433)
T TIGR01087 213 ADDPRFARLAQKSKAQVIWFSVEKDAE-------RGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAI--ALAKSLGLNL 283 (433)
T ss_pred CCCHHHHHhhhhcCceEEEEeCCccCC-------CceEEECCEEEEeccccccCCCcHHHHHHHHHHH--HHHHHcCCCH
Confidence 999988777665556778887532111 0111111111111112468999999999999999 8999999999
Q ss_pred HHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC------------------
Q 017087 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------------ 304 (377)
Q Consensus 243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~------------------ 304 (377)
+.|+++|++|++++||||++. ..+++.+||||+||||+|++++++.++ +|+++|+|++.+
T Consensus 284 ~~i~~~L~~f~g~~~R~e~v~-~~~g~~~idD~~atn~~a~~~al~~~~-~~ii~I~Gg~~~~~d~~~~~~~l~~~~~~v 361 (433)
T TIGR01087 284 EAILEALRSFKGLPHRLEYVG-QKNGVHFYNDSKATNVHATLAALSAFD-NPVILIVGGDDKGADFSPLAPAAAGKVKAV 361 (433)
T ss_pred HHHHHHHHhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCCCHHHHHHHHHhhCCEE
Confidence 999999999999999999996 357899999988999999999999985 478999998754
Q ss_pred --CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 305 --~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.|++++.+.+.+...+. .+..++++++|++.+.+.+++||+||++|+|.||++|+||++||++|+++|+.
T Consensus 362 ~~~G~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~gdiVLlspa~as~d~f~~~~~RG~~F~~~v~~ 433 (433)
T TIGR01087 362 LAIGEDAAKIAPLLKEAGL--SVYLVESLEEAVQAAREVASPGDVVLLSPACASFDQFKSYEERGEKFKELVRA 433 (433)
T ss_pred EEECCCHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHhcCCCCEEEECccchhhccccCHHHHHHHHHHHHhC
Confidence 46667777776654322 34457899999999999999999999999999999999999999999999973
No 4
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=9.1e-67 Score=515.51 Aligned_cols=349 Identities=28% Similarity=0.435 Sum_probs=288.3
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchh
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (377)
++||+||+|+++||++++|+++|+|++++++++++++ +.++|+||||||||||++||+++|+.+|.++.++|++|.|.
T Consensus 70 d~vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~ 147 (448)
T PRK03803 70 SEIIISPGLALDTPALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA 147 (448)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence 5899999999999999999999999999999999887 45899999999999999999999999999999999999987
Q ss_pred hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEe
Q 017087 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (377)
.... ..+.|++|+|+|+++++... .++|+++|||||++||+|+|||+|+|+++|.++++. .+.+|+|
T Consensus 148 ~~~~---------~~~~~~~V~E~ss~~l~~~~-~~~P~iaVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n 214 (448)
T PRK03803 148 LDLL---------SDDPELYVLELSSFQLETTH-SLNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFN 214 (448)
T ss_pred HHHh---------cCCCCEEEEEcChhhhCcCc-ccCccEEEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEe
Confidence 4321 12358899999999986544 589999999999999999999999999999999984 4789999
Q ss_pred CCChhhHHHHhccCcceeEeecCCC----cccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 017087 163 FGNQHLNEAIKGHRFNLAWIGAFPG----VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (377)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~l 238 (377)
.||+.+..+... ..++.+|+.... +.+... ....+.+.. +. ..+....++++|+||++|+++|+ ++++.+
T Consensus 215 ~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~l~l~G~Hn~~NalaAi--a~a~~l 288 (448)
T PRK03803 215 RDDALTRPLVPD-NQPCLSFGLNAPDFDEWGLREG-DGETYLAHG-FE-RLMPVRELKLRGSHNLANALAAL--ALGEAA 288 (448)
T ss_pred CCCHHHHHHhhc-CCcEEEEeCCCCCcCceEEEec-CCeEEEEeC-Cc-eEEehhccCCCCHHHHHHHHHHH--HHHHHc
Confidence 999988776543 245677774311 111000 011122111 11 11122468999999999999999 899999
Q ss_pred CCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc---CCcEEEEecCCCC-----------
Q 017087 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAK----------- 304 (377)
Q Consensus 239 gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~r~i~v~G~~~~----------- 304 (377)
|++++.|+++|++|+++|||||++. ..+++.+|||||||||+|+.++++.+. ++|+++|+|++.+
T Consensus 289 gi~~~~i~~~L~~f~g~~~R~e~v~-~~~gv~~idDs~atN~~a~~~al~~l~~~~~~~iilI~Gg~~k~~d~~~l~~~l 367 (448)
T PRK03803 289 GLPKEAMLEVLRTFTGLPHRCEWVR-EVAGVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGKGADFSPLREPV 367 (448)
T ss_pred CCCHHHHHHHHhhCCCCCCceEEEE-EeCCeEEEEcCCcCCHHHHHHHHHhhhhcCCCCEEEEECCCCCCCCHHHHHHHH
Confidence 9999999999999999999999997 357889999999999999999999984 2579999998754
Q ss_pred ---------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHh
Q 017087 305 ---------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 375 (377)
Q Consensus 305 ---------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~ 375 (377)
.|++.+.+.+.+... ..+..++++++|++.+.+.+++||+||++|+|+||++|+||++||+.|+++|+
T Consensus 368 ~~~~~~vil~G~~~~~i~~~l~~~---~~~~~~~~~~~a~~~a~~~a~~gdvVL~SPa~aSfd~f~~~~~RG~~F~~~v~ 444 (448)
T PRK03803 368 AKYVRAVVLIGRDADKIAAALGGA---VPLVRVATLAEAVAKAAELAQAGDIVLLSPACASLDMFKNFEARGDDFRQAVE 444 (448)
T ss_pred HhhCCEEEEECCCHHHHHHHHhcC---CCEEEeCCHHHHHHHHHHhCCCCCEEEeCchhhcccccCCHHHHHHHHHHHHH
Confidence 466667777666431 13456789999999999999999999999999999999999999999999997
Q ss_pred c
Q 017087 376 S 376 (377)
Q Consensus 376 ~ 376 (377)
+
T Consensus 445 ~ 445 (448)
T PRK03803 445 A 445 (448)
T ss_pred H
Confidence 5
No 5
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.1e-66 Score=514.51 Aligned_cols=354 Identities=29% Similarity=0.493 Sum_probs=290.6
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCC-CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccc
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR-SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~-~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~ 80 (377)
.++||+||+++|+||++++|+++|+|+++++++++++..+ +.++|+||||||||||++||+++|+.+|.++.+.||+|.
T Consensus 68 ~d~vv~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~ 147 (445)
T PRK04308 68 FDILALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT 147 (445)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccH
Confidence 3689999999999999999999999999999999887622 368999999999999999999999999999889999999
Q ss_pred hhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEE
Q 017087 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v 160 (377)
|+....... ...+.|++|+|+|+++++... .++|+++|||||++||+++|+|+|+|+++|.++++. ++.+|
T Consensus 148 ~~~~~~~~~-----~~~~~d~~VlE~~~~~l~~~~-~~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~~---~~~~i 218 (445)
T PRK04308 148 PVLEAELQR-----EGKKADVWVLELSSFQLENTE-SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQV 218 (445)
T ss_pred HHHHHHHhh-----cCCCCcEEEEEeChHHhCcCc-ccCCCEEEEecCChHHhcccCCHHHHHHHHHHHhcC---CCEEE
Confidence 976543210 123578999999999887643 589999999999999999999999999999999974 68999
Q ss_pred EeCCChhhHHHHhccCcceeEeecCC--CcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 017087 161 LPFGNQHLNEAIKGHRFNLAWIGAFP--GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (377)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~l 238 (377)
+|.|||....+.+. ..++++|+... ++..... ...+... +.. .+....++++|.||++|+++|+ +++..+
T Consensus 219 ~n~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~~--~~~~~~~--~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~l 290 (445)
T PRK04308 219 LNADDAFCRAMKRA-GREVKWFSLEHEADFWLERE--TGRLKQG--NED-LIATQDIPLQGLHNAANVMAAV--ALCEAV 290 (445)
T ss_pred EeCCcHHHHHHhhc-CCcEEEecCCCCCceeEecc--CCEEEEc--Cce-eeehhccCCcChhhHHHHHHHH--HHHHHc
Confidence 99999988776543 34667776432 1111100 0112222 111 1112368999999999999999 889999
Q ss_pred CCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC--------------
Q 017087 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304 (377)
Q Consensus 239 gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~-------------- 304 (377)
|+++++++++|++|+++|||||++. ..+++.+|||||+|||+|++++++.+. +|+++|+|++.+
T Consensus 291 gi~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~iDDs~~~n~~s~~~al~~~~-~~~i~IlGg~~~~~~~~~~~~~l~~~ 368 (445)
T PRK04308 291 GLPREALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKGQDFTPLRDALAGK 368 (445)
T ss_pred CCCHHHHHHHHhhCCCCCCceEEEE-eeCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 9999999999999999999999996 357889999999999999999999995 478999998754
Q ss_pred ------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 305 ------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 305 ------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.|.+.+.+.+.+...+. .+..++++++|++.+.+.+++||+||++|+|+||++|+||++||++|+++|++
T Consensus 369 ~~~vil~G~~~~~l~~~l~~~~~--~~~~~~~~e~a~~~~~~~~~~~d~VL~sp~~~S~d~f~~~~~Rg~~F~~~v~~ 444 (445)
T PRK04308 369 AKGVFLIGVDAPQIRRDLDGCGL--NLTDCATLEEAVQRAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKA 444 (445)
T ss_pred CcEEEEECCCHHHHHHHHHhcCC--CeEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhccccCHHHHHHHHHHHHHh
Confidence 45566667666643332 24457899999999999999999999999999999999999999999999985
No 6
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.2e-66 Score=515.06 Aligned_cols=354 Identities=29% Similarity=0.430 Sum_probs=291.7
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchh
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (377)
++||+||+++++||++++|++.|+|++++++++.++. +.++|+||||||||||++||+++|+..|.++.++||+|.|+
T Consensus 79 dlVV~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~--~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p~ 156 (458)
T PRK01710 79 DVIFKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYC--PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTPL 156 (458)
T ss_pred CEEEECCCCCCCchHHHHHHHcCCcEEechHHhhhhc--CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChhH
Confidence 6899999999999999999999999999999988765 56899999999999999999999999999998999999998
Q ss_pred hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEe
Q 017087 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (377)
..... ...+.|++|+|+|++++.... ++||++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|
T Consensus 157 ~~~~~-------~~~~~~~~VlE~~~~~~~~~~--~~PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n 227 (458)
T PRK01710 157 FSNIE-------EIKEEDKVVLELSSFQLMTMD--VSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLN 227 (458)
T ss_pred HHHHh-------hCCCCCEEEEEcCccccccCC--CCCCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 64221 112468899999998877543 699999999999999999999999999999999988888999999
Q ss_pred CCChhhHHHHhccCcceeEeecCCCccccccc-ccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 017087 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA-KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241 (377)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~ 241 (377)
.||+.+..+......++++|+...+.. .... ....+... +... .....++++|.||++|+++|+ |++..+ ++
T Consensus 228 ~Dd~~~~~~~~~~~~~~~~fg~~~~~~-~~~~~~~~~~~~~--~~~~-~~~~~l~l~G~hnv~NalaA~--a~a~~~-i~ 300 (458)
T PRK01710 228 KDNEITNGMEKEAKGDVVKFSRKEKVY-EGAYLKNGKLYIR--GKEV-CKKDDIKLKGMHNVENLLAAF--CAVNDD-VS 300 (458)
T ss_pred CCcHHHHHHHhhcCCcEEEEeCCCCCC-CceEEeCCEEEEc--CceE-EEhhhcCCccHhHHHHHHHHH--HHHHhC-CC
Confidence 999988777654445677887532110 0000 01112222 1111 112478999999999999999 777776 99
Q ss_pred HHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC-----------------
Q 017087 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304 (377)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~----------------- 304 (377)
+++|.++|++|++++||||.+.. .+++.+|||+|+|||.+++++++.+++ ++++|+|+..+
T Consensus 301 ~~~i~~~L~~f~~~~~R~e~~~~-~~g~~~i~Dsy~~np~s~~~al~~~~~-~~i~IlGg~~~~~~~~~l~~~~~~~~~~ 378 (458)
T PRK01710 301 IESMKKVATTFSGVEHRCEFVRE-INGVKYYNDSIASSPTRTLAGLKAFEK-PVILIAGGYDKKIPFEPLAEEGYEKIKT 378 (458)
T ss_pred HHHHHHHHHhCCCCCcceEEEEE-ECCEEEecccccCCHHHHHHHHHhCCC-CEEEEeCCcCCCCCHHHHHHHHHhhccE
Confidence 99999999999999999999863 578999999999999999999999964 68899998654
Q ss_pred ---CCCChHHHHHHHHh----CCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 305 ---FGYSGVLIWKTLVN----NGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 305 ---~g~~~~~i~~~l~~----~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.|+....+.+.++. .+.+.++..+.|.++|++.+.+.+++||+||++|||+||++|+||++||++|+++|++
T Consensus 379 vi~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gd~VLlspa~aS~d~f~~~~~RG~~F~~~v~~ 457 (458)
T PRK01710 379 LILMGATKNKIKEAFEKVISEKGIDIPIVIVNSLEEAVKVAKEIAEKGDIVTLSPACASFDMFPNFEIRGNKFKEIVNN 457 (458)
T ss_pred EEEECCCHHHHHHHHhhcccccCCCcceEEcCCHHHHHHHHHHhCCCCCEEEeChhhcccccccCHHHHHHHHHHHHHh
Confidence 56777777776642 2221234567899999999999999999999999999999999999999999999975
No 7
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4e-66 Score=513.74 Aligned_cols=350 Identities=27% Similarity=0.396 Sum_probs=282.3
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCC-----CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~-----~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
++||+||.++++||++++|+++|+|++++++++++... .+.++|+||||||||||++||+++|+.+|.++.+.||
T Consensus 72 D~VV~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn 151 (488)
T PRK03369 72 ALVVTSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN 151 (488)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC
Confidence 68999999999999999999999999999999876541 2347999999999999999999999999999899999
Q ss_pred ccchhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCc
Q 017087 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (377)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~ 157 (377)
+|.|+... + ..+.+++|+|+|+++++.. ..++|+++|||||++||+|+|||+|+|+++|++|++ ++
T Consensus 152 iG~p~~~~-~--------~~~~~~~VlE~ss~ql~~~-~~~~P~vaVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~ 217 (488)
T PRK03369 152 IGSPVLDV-L--------DEPAELLAVELSSFQLHWA-PSLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GR 217 (488)
T ss_pred CchHHHHh-c--------cCCCCEEEEECChHHhCcc-cccCCCEEEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CC
Confidence 99997432 1 2356899999999998754 358999999999999999999999999999999997 37
Q ss_pred eEEEeCCChhhHHHHhccCcc-eeEeecCC----CcccccccccceEEec--cCCeeEEEEeeccCCCChhHHHHHHHHH
Q 017087 158 LGLLPFGNQHLNEAIKGHRFN-LAWIGAFP----GVKIDTEAKTASFEVP--AVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (377)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~l~G~hn~~NalaA~ 230 (377)
.+|+|.||+....+....... ...++... ++.+. ...+... ..+.. ......++++|.||++|+++|+
T Consensus 218 ~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~l~l~G~hnv~NalaAl 292 (488)
T PRK03369 218 VAVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVR----DGHLVDRAFADDLR-LAPVASIPVPGPVGVLDALAAA 292 (488)
T ss_pred EEEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEE----CCEEEEeccCCccc-eechhhcCCCcHhHHHHHHHHH
Confidence 899999999887765433222 22232111 11110 0011000 00100 0112467899999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC------
Q 017087 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------ 304 (377)
Q Consensus 231 ~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~------ 304 (377)
+++..+|++++.|+++|++|+++|||||++. ..+++.+|||+|||||+|++++++.++ ++++|+|++.|
T Consensus 293 --a~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~-~~~gv~iIDDS~AhNp~s~~aal~~~~--~iilI~GG~~k~~d~~~ 367 (488)
T PRK03369 293 --ALARAVGVPAGAIADALASFRVGRHRAEVVA-VADGITYVDDSKATNPHAARASILAYP--RVVWIAGGLLKGASVDA 367 (488)
T ss_pred --HHHHHcCCCHHHHHHHHHhCCCCCCccEEEE-cCCCEEEEECCCCCCHHHHHHHHHhCC--CeEEEecCcCCCCCHHH
Confidence 8899999999999999999999999999996 357889999999999999999999884 68999988765
Q ss_pred --------------CCCChHHHHHHHHhCCCCCccccc----------------------C----------CHHHHHHHH
Q 017087 305 --------------FGYSGVLIWKTLVNNGLSIPCFAV----------------------A----------NMKDAVNHA 338 (377)
Q Consensus 305 --------------~g~~~~~i~~~l~~~g~~~~~~~~----------------------~----------~~~~ai~~a 338 (377)
+|++.+.+.+.+.+......+..+ + ++++|++.|
T Consensus 368 l~~~l~~~~~~vi~iG~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a 447 (488)
T PRK03369 368 LVAEMASRLVGAVLIGRDRAVVAEALSRHAPDVPVVQVVTGEDAGMPATPEVPVACVTDVADDDGETLGDAVMAAAVAAA 447 (488)
T ss_pred HHHHHhhheeEEEEEcCCHHHHHHHHHhcCCCCCEEEeccccccccccccccccccccccccccccccchhhHHHHHHHH
Confidence 678888888888642111112222 1 599999999
Q ss_pred HHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 339 RRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 339 ~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.+.+++||+||++|+|+||++|+||++||+.|+++|++
T Consensus 448 ~~~a~~gd~vLlSPacaSfd~f~~y~~RG~~F~~~v~~ 485 (488)
T PRK03369 448 RRLARPGDTVLLAPAGASFDQFTGYGDRGDAFAAAVRA 485 (488)
T ss_pred HHhCCCCCEEEeChhhcccccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999985
No 8
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.7e-66 Score=508.33 Aligned_cols=351 Identities=29% Similarity=0.429 Sum_probs=284.6
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccch
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~ 81 (377)
.++||+||+|+++||++++|+++|+|++++++++++++ +.++|+||||||||||++||+++|+.+|.++.++||+|.|
T Consensus 69 ~d~vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~ 146 (438)
T PRK04663 69 ADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVP 146 (438)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHH
Confidence 36899999999999999999999999999999998887 4689999999999999999999999999999999999998
Q ss_pred hhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEE
Q 017087 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (377)
.... . ..+.+++|+|+|+++++.. ..++|+++|||||++||+|+|+|+|+|+++|.++++. .+.+|+
T Consensus 147 ~~~~-~--------~~~~~~~V~E~ss~~l~~~-~~~~p~iavitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~ 213 (438)
T PRK04663 147 ALDL-L--------EQDAELYVLELSSFQLETT-SSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVV 213 (438)
T ss_pred HHhh-h--------cCCCCEEEEEcChhhhccC-cccCCCEEEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEE
Confidence 6321 1 2345899999999998743 3589999999999999999999999999999999985 379999
Q ss_pred eCCChhhHHHHhccCcceeEeecCC-CcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCC
Q 017087 162 PFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (377)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi 240 (377)
|.||+....... ..++++|+... ++.+.. .....+.... +.. .+....++++|.||++|+++|+ +++..+|+
T Consensus 214 n~dd~~~~~~~~--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~l~l~G~hNv~NalaAi--a~a~~lGi 286 (438)
T PRK04663 214 NRDDKQTYPDHA--ELQLVTFGFDQQDFGLAQ-HQGREWLADN-GQP-VLASAELKLVGRHNVANVLVVL--ALLDAAGV 286 (438)
T ss_pred eCCCHHHHhhhc--CCcEEEEecCCCCCCeEe-cCCeEEEEeC-Cce-eeehhhcCCcchhhHHHHHHHH--HHHHHcCC
Confidence 999998654432 34567887532 111110 0111222211 111 1223478999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc-CCcEEEEecCCCCCCCChHHHHHHHHhC
Q 017087 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKFGYSGVLIWKTLVNN 319 (377)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~r~i~v~G~~~~~g~~~~~i~~~l~~~ 319 (377)
++++|+++|++|++++||||++.. .+++.+|||+|++||+|+.++++.+. .+|+++|+|++.+.+.. +++.+.+...
T Consensus 287 ~~~~i~~~L~~f~g~~~R~e~v~~-~~g~~~idDs~~tn~~s~~~Al~~~~~~~~~i~IlGg~~~~~~~-~~l~~~~~~~ 364 (438)
T PRK04663 287 DYRKALDALKSYTGLTHRCQVVAD-NHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGKGADF-SPLKPVLATL 364 (438)
T ss_pred CHHHHHHHHHhCCCCCCceEEeee-eCCcEEEeCCCcCCHHHHHHHHHhcccCCcEEEEECCccCCCCH-HHHHHHHHhh
Confidence 999999999999999999999963 57899999999999999999999985 35899999999775543 3444433321
Q ss_pred -------CCC--------CcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 320 -------GLS--------IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 320 -------g~~--------~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
|.. .....+++.++|++.+.+.+++||+||++|||+||++|++|++||+.|+++|++
T Consensus 365 ~~~vi~~G~~~~~~~~~~~~~~~~~~~e~av~~~~~~~~~gd~VLlsp~~as~d~f~~~~~RG~~F~~~v~~ 436 (438)
T PRK04663 365 NLQLCCFGEDGDQFMPLHPSARRFDTMEDAIESISPQLKSGDMVMLSPACASFDQFKNFMARGDAFAQLARQ 436 (438)
T ss_pred CcEEEEECCCHHHHHHHhccCeecCCHHHHHHHHHHhCCCCCEEEECcccccccCcCCHHHHHHHHHHHHHh
Confidence 100 012346789999999999899999999999999999999999999999999975
No 9
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5e-65 Score=504.41 Aligned_cols=357 Identities=28% Similarity=0.388 Sum_probs=282.1
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhh-----CCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQV-----IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~-----~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
++||+||+++++||++++|+++|+|+++++++..+. +..+.++|+||||||||||++||+++|+..|.++.++||
T Consensus 76 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gn 155 (473)
T PRK00141 76 SLVVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGN 155 (473)
T ss_pred CEEEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEecc
Confidence 689999999999999999999999999999986553 222347999999999999999999999999999999999
Q ss_pred ccchhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCc
Q 017087 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (377)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~ 157 (377)
+|.|++.... ...+.+++|+|+|++++... ..++||++|||||++||+|+|+|+|+|+++|.++++ .+
T Consensus 156 ig~p~~~~l~-------~~~~~~~~V~E~ss~~l~~~-~~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~ 223 (473)
T PRK00141 156 IGVPVSAALV-------AQPRIDVLVAELSSFQLHWS-PTLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GP 223 (473)
T ss_pred CChhHHHHHh-------cCCCCCEEEEecCCcccccC-cccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhh----CC
Confidence 9999874322 13356899999999998654 358999999999999999999999999999999997 36
Q ss_pred eEEEeCCChhhHHHHhcc-CcceeEeecCCCcccccccccceEEeccCCeeEEEE-eeccCCCChhHHHHHHHHHHHHHH
Q 017087 158 LGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLG 235 (377)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~hn~~NalaA~~~a~~ 235 (377)
.+|+|.||+.+..+.... ..++++|+...............+.....+..+.+. ...++++|.||++|+++|+ +++
T Consensus 224 ~~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~--a~~ 301 (473)
T PRK00141 224 VAVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAA--AVA 301 (473)
T ss_pred EEEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHH--HHH
Confidence 899999999988776543 235678875321000000111112111122222221 2368999999999999999 889
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC-----------
Q 017087 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------- 304 (377)
Q Consensus 236 ~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~----------- 304 (377)
..+|++.+.++++|++|++++||||++. ..++..+|||||+|||++++++++.++ ++++|+||+.+
T Consensus 302 ~~lgi~~~~i~~~l~~~~~~~~R~e~~~-~~~~~~iiDdsyahNp~s~~~~l~~l~--~~~~i~gG~~kdkd~~~~~~~l 378 (473)
T PRK00141 302 RSQGVAPEAIARALSSFEVAGHRGQVVA-EHGGVTWIDNSKATNPHAADAALAGHE--SVVWVAGGQLKGADIDDLIRTH 378 (473)
T ss_pred HHcCCCHHHHHHHHhhCCCCCCceEEEE-EeCCEEEEEcCCCCCHHHHHHHHHhcC--CEEEEecCccCCCChHHHHHHH
Confidence 9999999999999999998888999996 346889999999999999999999985 67899977633
Q ss_pred ---------CCCChHHHHHHHHhCCCCCccc--ccC----CHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHH
Q 017087 305 ---------FGYSGVLIWKTLVNNGLSIPCF--AVA----NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMV 369 (377)
Q Consensus 305 ---------~g~~~~~i~~~l~~~g~~~~~~--~~~----~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~ 369 (377)
.|.+...+.+.+.+......+. ..+ ++++|++.|.+.+++||+||++|||+||++|+||++||++
T Consensus 379 ~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VllsPa~aS~d~f~~~~~RG~~ 458 (473)
T PRK00141 379 APRIKAAVVLGVDRAEIVAALAEHAPDAPVTVTDSTDPEEAMEEAVSAAVSLAEPGDTVLLAPAAASLDMYTGMGQRGDL 458 (473)
T ss_pred HhhccEEEEECCCHHHHHHHHHhcCCCCcEEEecCcccccCHHHHHHHHHHhCCCCCEEEeChhhhccccccCHHHHHHH
Confidence 4555566666665421111122 222 4599999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 017087 370 FQELAFS 376 (377)
Q Consensus 370 f~~~v~~ 376 (377)
|+++|++
T Consensus 459 F~~~v~~ 465 (473)
T PRK00141 459 FAEAARR 465 (473)
T ss_pred HHHHHHH
Confidence 9999975
No 10
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.2e-65 Score=505.27 Aligned_cols=356 Identities=29% Similarity=0.407 Sum_probs=289.3
Q ss_pred chhhhhhcccCCCcH----HHHHHHHcCCceeeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 2 WMLWLFLLEFQLKAT----GLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p----~~~~a~~~~~~~l~~~~~~~~~~~---~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
.++||+||+|+++|| ++..|++.|+|++++++++++.++ .+.++|+||||||||||++||+++|+.+|.++.+
T Consensus 66 ~d~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~ 145 (460)
T PRK01390 66 FAALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQM 145 (460)
T ss_pred CCEEEECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEE
Confidence 368999999999987 999999999999999999988642 2568999999999999999999999999999999
Q ss_pred eccccchhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCC
Q 017087 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154 (377)
Q Consensus 75 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~ 154 (377)
+||+|.|+..... ..+.+++|+|+|+++++..+ .++|+++|||||++||+++|||+|+|+++|+++++..+
T Consensus 146 ~gnig~~~~~~~~--------~~~~~~~V~E~~~~~ld~t~-~i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~~ 216 (460)
T PRK01390 146 GGNIGTAVLTLEP--------PPAGRVYVLELSSYQIDLAP-SLDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQG 216 (460)
T ss_pred cCccchhhhhccc--------CCCCCEEEEEcCcccccccc-ccCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCC
Confidence 9999998765321 23568999999999986543 57999999999999999999999999999999999876
Q ss_pred CCceEEEeCCChhhHHHHhcc---CcceeEeecCCCc--ccccccccceEEeccCCeeEEEEe-eccCCCChhHHHHHHH
Q 017087 155 NTKLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQL-HNMKVMGRHNYHNAAV 228 (377)
Q Consensus 155 ~~~~~v~n~dd~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~G~hn~~Nala 228 (377)
+ +.+|+|.||+.+..+.+.. .+++++|+..... ..... ....+..........+.. ..++++|.||++|+++
T Consensus 217 ~-~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~a 294 (460)
T PRK01390 217 P-DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYAD-GGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAA 294 (460)
T ss_pred C-CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEe-CCEEEEecCCCcceeeeHHhhccCCchhHHHHHHH
Confidence 6 8999999999877765432 2356666643210 00000 011122111000001110 0157999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC----
Q 017087 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---- 304 (377)
Q Consensus 229 A~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~---- 304 (377)
|+ +++..+|++.+.|+++|++|+++|||||++.. .+++.+|||+|+|||+|++++|+.+. ++++|+|+.++
T Consensus 295 Ai--aa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~~-~~g~~vIdDs~ahNp~s~~~aL~~~~--~i~~I~G~~d~~~~~ 369 (460)
T PRK01390 295 AY--AAARALGLSPEEIAAGLASFPGLAHRMEQVGR-RGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPKEGGI 369 (460)
T ss_pred HH--HHHHHcCCCHHHHHHHHHhCCCCCCceEEEee-eCCcEEEEcCCCCCHHHHHHHHHhCC--CeEEEecCccCCCCH
Confidence 99 88999999999999999999999999999963 46789999988999999999999874 78999998764
Q ss_pred ---------------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhc----CCCCEEEEcCCCcccccccChHH
Q 017087 305 ---------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA----TNGDAIVLSPGCASFDEFRNFEH 365 (377)
Q Consensus 305 ---------------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~----~~gdivli~~g~~s~~~~~~~~~ 365 (377)
.|.+++++.+.++.. . .+..+++.++|++.+.+.+ ++||+||++|||+||++|+||++
T Consensus 370 ~~L~~~~~~v~~v~~~g~~~~~l~~~~~~~-~--~~~~~~~l~~Av~~a~~~a~~~~~~g~~vllsP~~as~d~f~~~~~ 446 (460)
T PRK01390 370 ESLAPFFPRIAKAYLIGEAAEAFAATLGGA-V--PFEICGTLERAVAAAAADAAADGAPEPVVLLSPACASFDQFKNFEV 446 (460)
T ss_pred HHHHHHHHhhCEEEEECCCHHHHHHHHhcC-C--CEEEeCCHHHHHHHHHHhhhccCCCCCEEEeChhhhccccccCHHH
Confidence 477888888887643 2 3556789999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 017087 366 RGMVFQELAFS 376 (377)
Q Consensus 366 rg~~f~~~v~~ 376 (377)
||..|+++|++
T Consensus 447 rg~~f~~~~~~ 457 (460)
T PRK01390 447 RGDAFRELVAA 457 (460)
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 11
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=9.8e-65 Score=502.99 Aligned_cols=359 Identities=28% Similarity=0.449 Sum_probs=289.6
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchh
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (377)
++||+|++++++||++++|++.|+|++++++++++.. .+.++|+||||||||||++||+++|+.+|.++..+||+|.|+
T Consensus 70 d~vv~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~~ 148 (459)
T PRK02705 70 DLVVVSPGIPWDHPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYAA 148 (459)
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChhH
Confidence 5799999999999999999999999999999998876 467899999999999999999999999999998999999998
Q ss_pred hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEe
Q 017087 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (377)
+....-. . ....+.|++|+|+|+++++..+. ++|+++|||||++||+++|||+|+|+++|+++++. ++.+|+|
T Consensus 149 ~~~~~~~-~--~~~~~~d~~VlE~~s~~l~~~~~-~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln 221 (459)
T PRK02705 149 CELALLR-S--GKAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILN 221 (459)
T ss_pred HHHHhhh-h--ccCCCCCEEEEEccccccccCcc-cCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEE
Confidence 7643200 0 01345789999999998887664 89999999999999999999999999999999984 5799999
Q ss_pred CCChhhHHHHhccCcceeEeecCCC-ccccc-c--cccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 017087 163 FGNQHLNEAIKGHRFNLAWIGAFPG-VKIDT-E--AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (377)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~l 238 (377)
.||+.+..+.+... +.++++.... ..... + .......+...+ . .+....++++|.||++|+++|+ +++..+
T Consensus 222 ~dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~l~G~hn~~NalaAi--a~a~~l 296 (459)
T PRK02705 222 GDDPYLRQHRSSWP-KGYWTSTQGKASLLGQADGWILEEGWVVERGE-P-LFPLSALKMPGAHNLQNLLLAV--AAARLA 296 (459)
T ss_pred CCCHHHHHHHhcCC-ceEEeccCCccccccccceeEecCCEEEECCc-c-eeeHHHcCCccHHHHHHHHHHH--HHHHHc
Confidence 99998877755432 3455653211 11000 0 000001111111 0 1112358999999999999999 889999
Q ss_pred CCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC--------------
Q 017087 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK-------------- 304 (377)
Q Consensus 239 gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~-------------- 304 (377)
|++++.|.++|++|++++||||++. ..+++.+|||+++|||+|++++++.++ +++++|+|++.+
T Consensus 297 gv~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~ii~Ds~a~N~~s~~~al~~l~-~~~i~IlGg~~~~~d~~~~~~~l~~~ 374 (459)
T PRK02705 297 GLSAEAIAEALRSFPGVPHRLERIG-TINGIDFINDSKATNYDAAEVGLKAVP-GPVILIAGGEAKQGDDSAWLKQIKAK 374 (459)
T ss_pred CCCHHHHHHHHHhCCCCCCceEEEE-eeCCcEEEEeCCCCCHHHHHHHHHhCC-CCeEEEecCccCCCCHHHHHHHHHhh
Confidence 9999999999999999999999986 356789999988999999999999996 478999998764
Q ss_pred ------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCC--CEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 305 ------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG--DAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 305 ------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~g--divli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.|++.+.+.+.+...+.+..+..++|+++|++.+.+.+++| |+||++|+|+||++|++|++||++|+++|++
T Consensus 375 ~~~vi~~g~~~~~l~~~l~~~~~~~~~~~~~~~~eA~~~a~~~a~~g~~~~vllsp~~as~d~f~~~~~rg~~F~~~v~~ 454 (459)
T PRK02705 375 AAAVLLFGEAAPTLAQRLQESGYTGEYEIVETLDEAVPRAFELAKELQAKSVLLSPACASFDQYKNFEERGDHFRQLIQA 454 (459)
T ss_pred eeEEEEECCCHHHHHHHHHhcCCCcceEEcCCHHHHHHHHHHHhCCCCCCEEEechhhhhhccccCHHHHHHHHHHHHHH
Confidence 46677777777764332222456789999999999999999 7999999999999999999999999999975
No 12
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.7e-64 Score=498.18 Aligned_cols=356 Identities=25% Similarity=0.347 Sum_probs=285.1
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHHHH-HHhhCCC---CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDF-AAQVIPR---SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~-~~~~~~~---~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
.++||+||+|+++||++++|+++|+|+++++++ +.++... ..++|+||||||||||++||+++|+.+|.++.+.||
T Consensus 70 ~d~vV~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gn 149 (468)
T PRK04690 70 FDVVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN 149 (468)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCC
Confidence 368999999999999999999999999999998 4444411 247999999999999999999999999999999999
Q ss_pred ccchhhhhhhhcccCCCCCCCccEEEEEeCccccccCCc-cccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCC
Q 017087 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (377)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~-~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~ 156 (377)
+|.|+..... ...+.+++|+|+|++++..... .++|+++|||||++||+|+|+|+|+|.++|.++++...+
T Consensus 150 iG~p~~~~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~- 221 (468)
T PRK04690 150 IGVPLLEVLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP- 221 (468)
T ss_pred CCcchHHHhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-
Confidence 9998854321 1234688999999998775543 378999999999999999999999999999999987543
Q ss_pred ceEEEeCCChhhHHHHhccCcceeEeecCCCcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHH
Q 017087 157 KLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236 (377)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~ 236 (377)
+.+|+|.||+....+.. ...++++|+...+.... ..+.+.... ..+....++++|.||++|+++|+ +++.
T Consensus 222 ~~~v~n~dd~~~~~~~~-~~~~v~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~l~G~h~~~Na~~A~--a~~~ 291 (468)
T PRK04690 222 RIALLNAADPRLAALQL-PDSEVVWFNHPDGWHVR-----GDVVYRGEQ--ALFDTALVPLPGRHNRGNLCAVL--AALE 291 (468)
T ss_pred CeEEEeCccHHHHHHhc-CCCeEEEeeCCccceec-----ceEEEcCCc--eEEeeccccCccHhhHHHHHHHH--HHHH
Confidence 68899999998766532 23456777643211110 112222111 11223468899999999999999 8889
Q ss_pred HcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC------------
Q 017087 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------ 304 (377)
Q Consensus 237 ~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~------------ 304 (377)
.+|++++.|+++|++|+++|||||++. ..+|+.+||||++|||++++++++.++++|+++|+|++.+
T Consensus 292 ~lgi~~~~i~~~l~~~~~~~gR~e~~~-~~~g~~iidDs~ahNp~a~~~al~~~~~~~i~~i~Gg~~k~kd~~~l~~~l~ 370 (468)
T PRK04690 292 ALGLDAVALAPAAAGFRPLPNRLQELG-SRDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRGLDWTDFAAHMA 370 (468)
T ss_pred HcCCCHHHHHHHHHhCCCCCCCcEEEE-ccCCeEEEEeCCCCCHHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999996 3568999999889999999999998876689999997532
Q ss_pred ---------CCCChHHHHHHHHhCCC--CCcccccCCHHHHHHHHHH-hcCCCCEEEEcCCCcccccccChHHHHHHHHH
Q 017087 305 ---------FGYSGVLIWKTLVNNGL--SIPCFAVANMKDAVNHARR-MATNGDAIVLSPGCASFDEFRNFEHRGMVFQE 372 (377)
Q Consensus 305 ---------~g~~~~~i~~~l~~~g~--~~~~~~~~~~~~ai~~a~~-~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~ 372 (377)
.|.+.+.+.+.+.+... ...+..++++++|++.+.+ ..++||+||++|||+||++|+||++||+.|++
T Consensus 371 ~~~~~~v~~~g~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Av~~A~~~~~~~gdvVLlSPa~aSfD~f~~y~~RG~~F~~ 450 (468)
T PRK04690 371 QRAPLEIVTMGANGPRIHALLAPLAAAGRFGLHAADDLAHAVRLARTALGAQGGVVLLSPGAPSFGAYRDYVARGRHFAQ 450 (468)
T ss_pred hccCeEEEEeCCCHHHHHHHHHhcccccCCceEEcCCHHHHHHHHHHHhCCCCCEEEeCccccccccccCHHHHHHHHHH
Confidence 24455556655543210 1134557899999999988 78899999999999999999999999999999
Q ss_pred HHhc
Q 017087 373 LAFS 376 (377)
Q Consensus 373 ~v~~ 376 (377)
++..
T Consensus 451 ~~~~ 454 (468)
T PRK04690 451 LAGF 454 (468)
T ss_pred Hhcc
Confidence 9864
No 13
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5.4e-64 Score=496.21 Aligned_cols=356 Identities=28% Similarity=0.432 Sum_probs=292.0
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccch
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~ 81 (377)
.++||++++++++||++.+|+++|+|++++++++.+.. +.++|+||||||||||++||+++|+.+|.++.+.|++|.|
T Consensus 69 ~d~vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~--~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p 146 (447)
T PRK02472 69 FDLMVKNPGIPYTNPMVEKALEKGIPIITEVELAYLIS--EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYP 146 (447)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChh
Confidence 46899999999999999999999999999999877665 5689999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEE
Q 017087 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (377)
.+.... ...+.|++|+|+|++++... ..++|+++|||||++||+++|||+|+|+++|+++++..++.+.+|+
T Consensus 147 ~~~~~~-------~~~~~~~~V~E~ss~~~~~~-~~~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~ 218 (447)
T PRK02472 147 ASEVAQ-------KATADDTLVMELSSFQLMGI-ETFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVI 218 (447)
T ss_pred hHHHHh-------cCCCCCEEEEEcCchhhCcc-cccCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 765321 12345889999999886643 3579999999999999999999999999999999998878899999
Q ss_pred eCCChhhHHHHhccCcceeEeecCCCcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 017087 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241 (377)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~ 241 (377)
|.||+....+.+....++++|+...............+.+. +.. .+....++++|.||++|+++|+ +++..+|++
T Consensus 219 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~Na~aAi--a~~~~lgi~ 293 (447)
T PRK02472 219 NFDQEEVKELAKQTKATVVPFSTTEKVEDGAYIKDGALYFK--GEK-IMAADDIVLPGSHNLENALAAI--AAAKLLGVS 293 (447)
T ss_pred eCCcHHHHHHHhhcCceEEEeecCCCCcCceEEECCEEEEC--Cce-EEehhhcCCCCHHHHHHHHHHH--HHHHHcCCC
Confidence 99999887776555556777775322100000000112221 111 1112368999999999999999 889999999
Q ss_pred HHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC-----------------
Q 017087 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304 (377)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~----------------- 304 (377)
++.|+++|++|++++||||++. ..+++.+|||+|||||+|+.++++.+ ++|+++|+|+..+
T Consensus 294 ~~~i~~~L~~f~~~~~R~e~~~-~~~g~~vi~D~~a~N~~s~~~al~~~-~~~ii~I~g~~~~~~~~~~l~~~l~~~~~v 371 (447)
T PRK02472 294 NEAIREVLSTFSGVKHRLQYVG-TIDGRKFYNDSKATNILATQKALSGF-NQPVVLLAGGLDRGNEFDELVPYLKNVKAM 371 (447)
T ss_pred HHHHHHHHHhCCCCCCcceEEE-EECCeEEEECCCCCCHHHHHHHHHhC-CCCEEEEECCCCCCCCHHHHHHHHhccCEE
Confidence 9999999999999999999996 35678999999999999999999998 4678999997642
Q ss_pred --CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 305 --~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.|.+.+.+.+.+...+. ++..++++++|++.+.+.+++||+||++|+|.||++|++|++||.+|+++|++
T Consensus 372 ~~~G~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~d~VLls~a~~s~d~f~~~~~Rg~~F~~~v~~ 443 (447)
T PRK02472 372 VVFGETAEKLARAAEKAGI--TVVEADNVEDAVPKAYELSEPGDVILLSPACASWDQYKTFEERGDEFIKAVEE 443 (447)
T ss_pred EEECCCHHHHHHHHHhCCC--ceEEcCCHHHHHHHHHHhCCCCCEEEeCccccccccccCHHHHHHHHHHHHHH
Confidence 46666777776654332 34567899999999998899999999999999999999999999999999975
No 14
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.9e-64 Score=494.85 Aligned_cols=347 Identities=29% Similarity=0.445 Sum_probs=281.6
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchh
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (377)
+++|+|++++++||++.+|+++|+|++++++++++.+ +.++|+||||||||||++||+++|+.+|.++.++||+|.|.
T Consensus 67 d~vv~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p~ 144 (438)
T PRK03806 67 DLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLPA 144 (438)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchhH
Confidence 6899999999999999999999999999999988876 46899999999999999999999999999999999999986
Q ss_pred hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhcccCCCCceEEE
Q 017087 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL 161 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (377)
... . ..+.+++|+|+|+++++.. ..++|+++|||||++||+|+| +|+|+|+++|.++++. .+.+|+
T Consensus 145 ~~~-~--------~~~~~~~V~E~ss~~l~~~-~~~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~ 211 (438)
T PRK03806 145 LSL-L--------DQECELYVLELSSFQLETT-SSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVV 211 (438)
T ss_pred HHh-h--------ccCCCEEEEEccchhhccC-cccCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEE
Confidence 321 1 2345889999999998754 357899999999999999999 5999999999999984 478999
Q ss_pred eCCChhhHHHHhccCcceeEeecCC-CcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCC
Q 017087 162 PFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (377)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi 240 (377)
|.|||....+... ..++.+|+... ++..... ....+.... +.. .+....++++|.||++|+++|+ ++++.+|+
T Consensus 212 n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi 285 (438)
T PRK03806 212 NADDALTMPIRGA-DKRCVSFGVNMGDYHLNRQ-QGETWLRVK-GEK-VLNTKEMKLSGQHNYTNALAAL--ALADAVGI 285 (438)
T ss_pred eCCCHHHHHHhcC-CceEEEEecCCCceEEEec-CCeEEEEec-Cce-eeehhhcCCcccccHHHHHHHH--HHHHHcCC
Confidence 9999988765432 33566776421 1111100 111111111 111 1122468999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc-CCcEEEEecCCCC---------------
Q 017087 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAK--------------- 304 (377)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~r~i~v~G~~~~--------------- 304 (377)
++++++++|++|+++|||||++. ..+++.+|||+|+|||+|++++++.+. ++|+++|+|+++|
T Consensus 286 ~~~~i~~~L~~f~~~~gR~E~v~-~~~~~~~i~Ds~a~n~~a~~~al~~l~~~~~~i~IlG~~~k~~d~~~l~~~l~~~~ 364 (438)
T PRK03806 286 PRASSLKALTTFTGLPHRFQLVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGDN 364 (438)
T ss_pred CHHHHHHHHHhCCCCCCeEEEEE-eeCCEEEEEcCCCCCHHHHHHHHHhCccCCcEEEEECCcCCCCCHHHHHHHHHhhC
Confidence 99999999999999999999996 356889999988999999999999986 3578999999866
Q ss_pred -----CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 305 -----~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.|++.+.+.+.+.. ....+++.++|++.+.+.+++||+||++|+|+||++|++|++||++|+++|++
T Consensus 365 ~~v~~~g~~~~~l~~~~~~-----~~~~~~~~~~av~~a~~~~~~gd~VLlsp~~as~d~f~~~~~RG~~F~~~v~~ 436 (438)
T PRK03806 365 IRLYCFGRDGAQLAALRPE-----VSQLTETMEQAMRLIAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKE 436 (438)
T ss_pred cEEEEECCCHHHHHHHhhc-----ceEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhcCccCHHHHHHHHHHHHHh
Confidence 33444444433211 13456889999999999999999999999999999999999999999999975
No 15
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=9.1e-63 Score=491.22 Aligned_cols=360 Identities=30% Similarity=0.419 Sum_probs=285.9
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCC--CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecccc
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~--~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g 79 (377)
.++||+++.++|++|++..|++.|+|++++++++++... ++.++|+||||||||||++||+++|+..|.++.+.||+|
T Consensus 79 ~D~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig 158 (480)
T PRK01438 79 TDLVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIG 158 (480)
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCcc
Confidence 368999999999999999999999999999999887652 245799999999999999999999999999999999999
Q ss_pred chhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceE
Q 017087 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~ 159 (377)
.|+..... ...+.+++|+|+|+++++..+ .++|+++|||||++||+++|||+|+|+++|++|++. ..+.+
T Consensus 159 ~~~~~~~~-------~~~~~~~~V~E~ss~~l~~~~-~i~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~--~~~~~ 228 (480)
T PRK01438 159 TPVLDAVR-------DPEGYDVLAVELSSFQLHWSP-SVSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVAC 228 (480)
T ss_pred HHHHHHHh-------cCCCCCEEEEEcChHHhCcCc-ccCCCEEEEecCChhhccccCCHHHHHHHHHHHHhC--CCceE
Confidence 98764321 234578999999999987654 478999999999999999999999999999999985 34789
Q ss_pred EEeCCChhhHHHHhcc----CcceeEeecCC----Ccccccccc-cceEEeccCCeeEEEE-eeccCCCChhHHHHHHHH
Q 017087 160 LLPFGNQHLNEAIKGH----RFNLAWIGAFP----GVKIDTEAK-TASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVA 229 (377)
Q Consensus 160 v~n~dd~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~l~G~hn~~NalaA 229 (377)
|+|.|||....+.... .+++++|+... ++....... ...+.....+..+.+. ...++++|.||++|+++|
T Consensus 229 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA 308 (480)
T PRK01438 229 VYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAA 308 (480)
T ss_pred EEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHH
Confidence 9999999887765432 34566676421 111100000 0001111001111111 125799999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC-----
Q 017087 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----- 304 (377)
Q Consensus 230 ~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~----- 304 (377)
+ +++..+|++.+.|+++|++|++++||||++.. .+++.+|||+|||||++++++++.++ ++++|+|++.+
T Consensus 309 i--a~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~~-~~~~~iiDDs~ahNp~a~~aaL~~l~--~i~~I~gG~~~~kd~~ 383 (480)
T PRK01438 309 A--ALARSFGVPPAAVRDGLRAFRPDAHRIEHVAD-ADGVTWVDDSKATNPHAAAASLAAYP--SVVWIAGGLAKGADFD 383 (480)
T ss_pred H--HHHHHcCCCHHHHHHHHHhCCCCCCceEEEEE-ECCEEEEecCccCCHHHHHHHHHhCC--CEEEEEecccCCCCHH
Confidence 9 88889999999999999999999999999963 56788999988999999999999983 78999986533
Q ss_pred ---------------CCCChHHHHHHHHhCCCCCcccccC-----CHHHHHHHHHHhcCCCCEEEEcCCCcccccccChH
Q 017087 305 ---------------FGYSGVLIWKTLVNNGLSIPCFAVA-----NMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFE 364 (377)
Q Consensus 305 ---------------~g~~~~~i~~~l~~~g~~~~~~~~~-----~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~ 364 (377)
.|.+...+.+.++.......+..+. +.++|++.+.+.+.++|+||++|+|+||++|++|+
T Consensus 384 ~~~~~l~~~~~~vi~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~~~d~vllsp~~as~d~f~~~~ 463 (480)
T PRK01438 384 DLVRRAAGRLRGVVLIGADRAEIAEALARHAPDVPVVEVDRTDTGAMDEAVAAAAKLARPGDTVLLAPAAASMDMFTDYA 463 (480)
T ss_pred HHHHHHHhhceEEEEECCCHHHHHHHHHhcCCCCCEEEecCCCcCCHHHHHHHHHHhCCCCCEEEechhhhccccccCHH
Confidence 4666777777776421111233344 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 017087 365 HRGMVFQELAFS 376 (377)
Q Consensus 365 ~rg~~f~~~v~~ 376 (377)
+||+.|+++|++
T Consensus 464 ~Rg~~F~~~v~~ 475 (480)
T PRK01438 464 ARGDAFAAAVRA 475 (480)
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 16
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.2e-62 Score=491.69 Aligned_cols=360 Identities=30% Similarity=0.436 Sum_probs=286.8
Q ss_pred hhhhhhcccCCCc----HHHHHHHHcCCceeeHHHHHHhhCC------CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCe
Q 017087 3 MLWLFLLEFQLKA----TGLACLLQSGKRVMSELDFAAQVIP------RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 3 ~~~~~~~~~~~~~----p~~~~a~~~~~~~l~~~~~~~~~~~------~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~ 72 (377)
++||+|++|+++| |++++|++.|+|++++++++++.+. ...++|+||||||||||++||+++|+.+|+++
T Consensus 71 d~vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~ 150 (498)
T PRK02006 71 DLVALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV 150 (498)
T ss_pred CEEEECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence 6899999999998 9999999999999999999887651 12489999999999999999999999999999
Q ss_pred eeeccccchhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccc
Q 017087 73 FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152 (377)
Q Consensus 73 ~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~ 152 (377)
++.|+++.+.......... .....+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++
T Consensus 151 ~~~Gni~~~~~~~~~~~~~---~~~~~~~~V~E~ss~~l~~~~-~~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~- 225 (498)
T PRK02006 151 AVAGNISPAALDKLMEAID---AGALPDVWVLELSSFQLETTH-TLAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG- 225 (498)
T ss_pred EEECCCCHHHHHHHHHhhc---cCCCCcEEEEEccHHHhCccc-ccCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC-
Confidence 9999998764432211110 011247899999999886543 47999999999999999999999999999999997
Q ss_pred CCCCceEEEeCCChhhHHHHhccC-cceeEeecCC-----CcccccccccceEEeccCCee-------------------
Q 017087 153 MVNTKLGLLPFGNQHLNEAIKGHR-FNLAWIGAFP-----GVKIDTEAKTASFEVPAVGVV------------------- 207 (377)
Q Consensus 153 ~~~~~~~v~n~dd~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------------------- 207 (377)
+++.+|+|.|||.+..+..... .++++|+... ++.+... ....+.+......
T Consensus 226 --~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (498)
T PRK02006 226 --PRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRD-NGMAWLVEAEDRDAADPAPSRRRKKDAAPPPD 302 (498)
T ss_pred --CCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEec-CCeEEEEecCcccccccccccccccccccccc
Confidence 4789999999999887765432 3567787531 1111000 0001111100000
Q ss_pred E---E-EEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHH
Q 017087 208 S---Q-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEAT 283 (377)
Q Consensus 208 ~---~-~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~ 283 (377)
. . .....++++|.||++|+++|+ +++..+|+++++++++|++|++++||||++.. .+++.+|||||+|||+++
T Consensus 303 ~~~~~~~~~~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~-~~g~~~idDs~~tn~~s~ 379 (498)
T PRK02006 303 IRLKRLMPADALRIRGLHNAANALAAL--ALARAIGLPAAPLLHGLREYRGEPHRVELVAT-IDGVDYYDDSKGTNVGAT 379 (498)
T ss_pred cchhceeeHhhcCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCceEEEEE-ECCEEEEEcCCCCCHHHH
Confidence 0 1 111358999999999999999 89999999999999999999999999999963 578899999999999999
Q ss_pred HHHHhcccCCcEEEEecCCCC--------------------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcC
Q 017087 284 CTGLMDLKGHKCVILLGGQAK--------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 343 (377)
Q Consensus 284 ~~al~~~~~~r~i~v~G~~~~--------------------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~ 343 (377)
.++++.++ +|+++|+|++.+ .|++.+.+.+.+...+. .+..++|+++|++.+.+.++
T Consensus 380 ~~al~~~~-~~ii~IlGg~~~~~~~~~~~~~l~~~~~~vi~~G~~~~~i~~~~~~~~~--~~~~~~~~~eAi~~a~~~~~ 456 (498)
T PRK02006 380 VAALDGLA-QRVVLIAGGDGKGQDFSPLAAPVARHARAVVLIGRDAPAIRAALAGTGV--PLVDAATLEEAVRAAAALAQ 456 (498)
T ss_pred HHHHHhCC-CCEEEEEcCCCCCCCHHHHHHHHHHhCCEEEEEcCCHHHHHHHHhhCCC--ceEecCCHHHHHHHHHHhcC
Confidence 99999984 578999998753 46677777776653332 35567999999999999999
Q ss_pred CCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 344 NGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 344 ~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
+||+||++|+|+||++|++|++||++|+++|++
T Consensus 457 ~gd~VLlsp~~~S~d~f~~~~~Rg~~F~~~v~~ 489 (498)
T PRK02006 457 PGDAVLLSPACASLDMFRNYAHRAEVFRAAVEE 489 (498)
T ss_pred CCCEEEEChhhcccccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975
No 17
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.4e-60 Score=459.52 Aligned_cols=325 Identities=25% Similarity=0.386 Sum_probs=264.2
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchh
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (377)
++||+||+++++||++++|++ ++++++++++.+ .++|+||||||||||++||+++|+++|.. .+||+|.|+
T Consensus 56 d~vv~sp~i~~~~~~~~~a~~----i~~~~e~~~~~~---~~~i~ITGT~GKTTTt~ml~~iL~~~g~~--~~gniG~p~ 126 (401)
T PRK03815 56 DLEIPSPGIPPSHPLIQKAKN----LISEYDYFYDVM---PFSIWISGTNGKTTTTQMTTHLLEDFGAV--SGGNIGTPL 126 (401)
T ss_pred CEEEECCCCCCCCHHHHHHHH----HhhHHHHHHHhc---CCEEEEECCCcHHHHHHHHHHHHHHCCCc--EEEEecHhH
Confidence 689999999999999999998 699999998876 24999999999999999999999999943 578999998
Q ss_pred hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEe
Q 017087 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (377)
+. . ..+.+++|+|+|++++... ..++|+++|||||++||+|+|+|+|+|.++|.+|++.+++++.+|+|
T Consensus 127 ~~--~--------~~~~~~~V~E~ss~~~~~~-~~~~p~iavitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n 195 (401)
T PRK03815 127 AE--L--------DKNAKIWVLETSSFTLHYT-NKAKPNIYLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILP 195 (401)
T ss_pred Hh--c--------CCCCCEEEEECChHHhhCC-ccCCCcEEEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEe
Confidence 75 2 1245889999999886544 35799999999999999999999999999999999999889999999
Q ss_pred CCChhhHHHHhccCcceeEeecCCCcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCH
Q 017087 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (377)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~ 242 (377)
.||+... ...++++|+...+. . ..+.+.. ..+.+.+. |++|+++|+ ++++.+|+
T Consensus 196 ~dd~~~~-----~~~~~~~fg~~~~~------~-~~~~~~~---------~~~~~~~~-~~~NalaA~--a~a~~~G~-- 249 (401)
T PRK03815 196 KKFKNTP-----TKAQKIFYEDEEDL------A-EKFGIDS---------EKINFKGP-FLLDALLAL--AVYKILFD-- 249 (401)
T ss_pred ccccccc-----cCCcEEEEecCCcc------c-cceeEeh---------HhcCCchH-HHHHHHHHH--HHHHHhCc--
Confidence 9998642 12456677632110 0 0111110 12334455 499999999 89999994
Q ss_pred HHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC------------------
Q 017087 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------------------ 304 (377)
Q Consensus 243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~------------------ 304 (377)
+.+.++|++|+|+++|||++. ..+++.+||||||+||+|+.++++.++++|+++|+||..+
T Consensus 250 ~~~~~~L~~f~~~~~R~e~~~-~~~gv~~idDs~~tn~~a~~~al~~~~~~~ii~IlGG~~k~~~~~~l~~~~~~~~~~v 328 (401)
T PRK03815 250 ELDYERLNAFKIGKHKLEEFR-DKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGDDKGVDLTPLFEFMKNLNIEL 328 (401)
T ss_pred HHHHHHHHhCCCCCceEEEEE-EECCEEEEECCCCCCHHHHHHHHHhCCCCCEEEEECCCCCCCCHHHHHHHHHhhCcEE
Confidence 556678999999999999996 3588999999999999999999999865678999998764
Q ss_pred --CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 305 --FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 305 --~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.|+....+.+.+...+ ..+..+++.++|++.+.+.+++||+||++|||+||++|+||++||+.|+++|++
T Consensus 329 ~~~G~~~~~~~~~~~~~~--~~~~~~~~~e~av~~~~~~~~~gdvVLlSPa~aSfd~f~ny~~RG~~F~~~v~~ 400 (401)
T PRK03815 329 YAIGSNTEKIQALAKEFN--IKAFVCEFLEKAVEEIKKVLKQNEVALLSPAAASLDQFKSYKERGEKFKAFVLK 400 (401)
T ss_pred EEECCCHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHhCCCCCEEEeChhhhccccccCHHHHHHHHHHHHHh
Confidence 4555555555554322 123456789999999998899999999999999999999999999999999985
No 18
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.3e-59 Score=465.43 Aligned_cols=359 Identities=30% Similarity=0.492 Sum_probs=291.7
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchh
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (377)
++||+++.++++||++.+|+++|+|++++++.+++.. + .++|+||||||||||++||+++|+..|.++.+.|++|.|+
T Consensus 70 d~vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~~ 147 (450)
T PRK14106 70 DLVVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYPL 147 (450)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHHH
Confidence 5789999999999999999999999999999999877 3 7899999999999999999999999999889999999987
Q ss_pred hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEe
Q 017087 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (377)
...... ..+.+++|+|+|++++... ..++|+++|||||++||+++|||+|+|+++|.++++..++.+++++|
T Consensus 148 ~~~~~~-------~~~~~~~v~E~~~~~~~~~-~~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln 219 (450)
T PRK14106 148 IDAVEE-------YGEDDIIVAEVSSFQLETI-KEFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLN 219 (450)
T ss_pred HHHHhc-------CCCCCEEEEEcChhhhccc-cccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEe
Confidence 643221 2256889999999876533 25899999999999999999999999999999999988888999999
Q ss_pred CCChhhHHHHhccCcceeEeecCCCcccccccccceEEeccCCeeEE-EEeeccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 017087 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241 (377)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~ 241 (377)
.|||....+.....+++++|+...............+.+...+.... .....+|++|.||++|+++|+ ++++.+|++
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAi--a~~~~lgi~ 297 (450)
T PRK14106 220 YDDPRTRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAAT--AAAYLLGIS 297 (450)
T ss_pred CCcHHHHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHH--HHHHHcCCC
Confidence 99998877776666677788754211100000011222222221111 112368999999999999999 889999999
Q ss_pred HHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC-----------------
Q 017087 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------- 304 (377)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~----------------- 304 (377)
+++++++|++|+++|||||++.. .++..+|+|+|+|||++++++++.++ +++++|+|++.+
T Consensus 298 ~~~i~~~L~~~~~~~gR~e~i~~-~~~~~vi~D~~ahNP~s~~~~l~~l~-~~~i~v~g~~~~~k~~~~~~~~l~~~~~~ 375 (450)
T PRK14106 298 PDVIANTLKTFKGVEHRIEFVAE-INGVKFINDSKGTNPDAAIKALEAYE-TPIVLIAGGYDKGSDFDEFAKAFKEKVKK 375 (450)
T ss_pred HHHHHHHHHhCCCCCcceEEEee-ECCEEEEeCCCccCHHHHHHHHHhCC-CCeEEEeCCcCCCCCHHHHHHHHHhhCCE
Confidence 99999999999999999999863 46788999977999999999999985 367888987632
Q ss_pred ---CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 305 ---FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 305 ---~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.|.+++++.+.+...+. .++..++|+++|++.+.+.+++||+||+++.+.+++.|++|++||+.|+++|.+
T Consensus 376 vi~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~d~ilv~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (450)
T PRK14106 376 LILLGETAQEIAEAARKYGF-DNILFAETLEEAVKKAYEIAKPGDVVLLSPACASWDMFKNFEERGRLFKELVLE 449 (450)
T ss_pred EEEEcCCHHHHHHHHhhCCC-CcEEEeCCHHHHHHHHHHhCCCCCEEEEChhhhccccccCHHHHHHHHHHHHHh
Confidence 45667777776654332 134567899999999999899999999999899999999999999999999964
No 19
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.7e-58 Score=437.42 Aligned_cols=337 Identities=20% Similarity=0.278 Sum_probs=274.9
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCe--eeeccccc
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA--FVGGNLGN 80 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~--~~~g~~g~ 80 (377)
+.||+|+|++++|||+++|+++|+|+++|+++|++++ +...+|+|+|||||||||+||+++|+++|+.+ .++|.+..
T Consensus 68 ~~VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm-~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~ 146 (459)
T COG0773 68 DVVVVSNAIKEDNPEIVAALERGIPVISRAEMLAELM-RFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKN 146 (459)
T ss_pred ceEEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHH-hCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECccccc
Confidence 5699999999999999999999999999999999999 56889999999999999999999999999874 34555444
Q ss_pred hhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEE
Q 017087 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v 160 (377)
.-..... ..-+|+|+|+++++..++ .++|+++|+|||+.||+|+|++++++.+++..+++.+|..|.+|
T Consensus 147 ~g~na~~---------g~~~~fV~EADEsD~sFl--~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v 215 (459)
T COG0773 147 FGTNARL---------GSGDYFVAEADESDSSFL--HYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAV 215 (459)
T ss_pred CCccccc---------CCCceEEEEecccccccc--cCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEE
Confidence 3232222 223789999999987765 47999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHhc-cCcceeEeecCC--Cccc---ccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHH
Q 017087 161 LPFGNQHLNEAIKG-HRFNLAWIGAFP--GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (377)
Q Consensus 161 ~n~dd~~~~~~~~~-~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~ 234 (377)
+|.|||.++++... +..++++||.+. +++. ..+.....|.+...+. .+..+.+|+||+||+.|+++|+ |+
T Consensus 216 ~~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~--~~~~~~l~~pG~HNvlNAlaai--a~ 291 (459)
T COG0773 216 VCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGE--ELGEVKLPLPGRHNVLNALAAI--AV 291 (459)
T ss_pred EECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCc--eeEEEEEcCCchhhHHHHHHHH--HH
Confidence 99999999997765 566789999874 3322 1222223344333332 2335689999999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcc----c-CCcEEEEecCCCC-----
Q 017087 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----K-GHKCVILLGGQAK----- 304 (377)
Q Consensus 235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~-~~r~i~v~G~~~~----- 304 (377)
|+.+|++.+.|+++|++|+|+.+|||+.+ ..+++++|||| +|+|..+.++|+.+ + ++|+++||.+..-
T Consensus 292 a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g-~~~~~~viDDY-aHHPtEI~aTL~aaR~~~~~~~rIvaifQPHrySRt~~ 369 (459)
T COG0773 292 ARELGIDPEAIAEALASFQGVKRRFELKG-EVNGVTVIDDY-AHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYSRTRD 369 (459)
T ss_pred HHHcCCCHHHHHHHHHhCCCcceeeEEee-eECCEEEEecC-CCCHHHHHHHHHHHHHhcCCCceEEEEECCCchHhHHH
Confidence 99999999999999999999999999998 47889999997 89898888877665 3 2689999986531
Q ss_pred ----------------------------CC-CChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCc
Q 017087 305 ----------------------------FG-YSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355 (377)
Q Consensus 305 ----------------------------~g-~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~ 355 (377)
.| .+++.+.+.++..+ ... +++.++..+.+.+.+++||+||+ +|+|
T Consensus 370 ~~~dF~~~l~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~---~~~-~~~~~~~~~~l~~~~~~gD~il~-mGAG 444 (459)
T COG0773 370 LLDDFAKALSDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPG---HVD-VPDLDDLVELLAKVAQPGDVILF-MGAG 444 (459)
T ss_pred HHHHHHHHHhcCCEEEEecccccCCCCCcCCccHHHHHHHhhcCC---ccc-CCCHHHHHHHHHhhCCCCCEEEE-ecCC
Confidence 13 45677777776532 122 68999999999999999999998 5999
Q ss_pred ccccccC
Q 017087 356 SFDEFRN 362 (377)
Q Consensus 356 s~~~~~~ 362 (377)
++..+..
T Consensus 445 di~~~~~ 451 (459)
T COG0773 445 DIGKIAR 451 (459)
T ss_pred cHHHHHH
Confidence 9866543
No 20
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.8e-56 Score=437.72 Aligned_cols=330 Identities=28% Similarity=0.456 Sum_probs=261.3
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCC-CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccch
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~-~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~ 81 (377)
+++|+++.++++||++.+|+++|+|++++.+++.+... .+.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus 61 dlvV~s~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p 140 (418)
T PRK00683 61 DLVVRSPGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIP 140 (418)
T ss_pred CEEEECCCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHH
Confidence 68999999999999999999999999999988655421 24679999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCCCccEEEEEeCccccccCCc-cccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEE
Q 017087 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~-~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v 160 (377)
+.... .+.+++|+|+|++++..... ...|+++|||||++||+|+|+|+|+|+++|.+++..+.
T Consensus 141 ~l~~~----------~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~s~e~y~~aK~~i~~~~~------ 204 (418)
T PRK00683 141 ILDGM----------QQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLR------ 204 (418)
T ss_pred HHHHh----------hcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCCCHHHHHHHHHHHHHhhh------
Confidence 74321 23578999999998775433 23349999999999999999999999999999997543
Q ss_pred EeCCChhhHHHHhccCcceeEeecCCCcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHH-cC
Q 017087 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IG 239 (377)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~-lg 239 (377)
|.|+.... ...+|+.. .. ..... .+.....+ ..++++|.||++|+++|+ +++.. +|
T Consensus 205 -~~~~~~~~--------~~~~~~~~--~~-~~~~~--~~~~~~~~-------~~~~~~g~hn~~Na~aA~--a~~~~l~g 261 (418)
T PRK00683 205 -NPDDLWVG--------DERSYGHS--YL-EYVQE--IMRLLDKG-------SALKPLYLHDRYNYCAAY--ALANEVFP 261 (418)
T ss_pred -Cccccccc--------ccCCcCce--ee-cCcch--hhhhhccc-------cccCCCccchHHHHHHHH--HHHHHhcC
Confidence 22222110 01122211 00 00000 00000011 146789999999999999 78888 69
Q ss_pred CCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC---------------
Q 017087 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------------- 304 (377)
Q Consensus 240 i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~--------------- 304 (377)
++.++++++|++|++++||||++. ..++..+|||+||+||+|++++++.+. +|+++|+|++.+
T Consensus 262 ~~~~~i~~~l~~~~~~~~R~e~v~-~~~g~~~i~Ds~~t~~~s~~~al~~~~-~~~i~vlG~~~~~~d~~~l~~~~~~~~ 339 (418)
T PRK00683 262 ISEESFLEAVATFEKPPHRMEYLG-EKDGVHYINDSKATTVSAVEKALLAVG-NQVIVILGGRNKGCDFSSLLPVLRQTA 339 (418)
T ss_pred CCHHHHHHHHHhCCCCCCceEEEe-ecCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCCCHHHHHHHHHHhC
Confidence 999999999999999999999996 357899999999999999999999874 578999998765
Q ss_pred -----CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 305 -----FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 305 -----~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.|++.+.+.+.+.+. . .+..++|+++|++.+.+.+++||+||++|||+||++|++|++||++|+++|++
T Consensus 340 ~~v~~~G~~~~~i~~~l~~~-~--~~~~~~~~~~a~~~~~~~~~~gd~VLlsp~~~s~d~f~~~~~RG~~F~~~v~~ 413 (418)
T PRK00683 340 KHVVAMGECRQEIAQALSEK-F--PLTVVKDLQEAVSCAQEIAQPGDVILLSPGCASFDQFRSFEERGAMFKQLVGM 413 (418)
T ss_pred CEEEEECCCHHHHHHHHhcC-C--CEEEeCCHHHHHHHHHHhCCCCCEEEECchhcccccccCHHHHHHHHHHHHHH
Confidence 455666666666432 1 24567899999999999999999999999999999999999999999999974
No 21
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=5.6e-56 Score=439.76 Aligned_cols=341 Identities=17% Similarity=0.232 Sum_probs=266.5
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCC--eeeecccc
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLG 79 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~--~~~~g~~g 79 (377)
.++||+||+++++||++++|+++|+|+++++++++++. +..++|+||||||||||++||+++|+.+|.+ +.++|+++
T Consensus 67 ~d~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~ 145 (461)
T PRK00421 67 ADVVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILN 145 (461)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceec
Confidence 36899999999999999999999999999999999887 3458999999999999999999999999964 45667655
Q ss_pred chhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceE
Q 017087 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~ 159 (377)
.+..... ..+.+++|+|+|++++.. ..++|+++|||||++||+|+|||+|+|+++|.+++..+++++.+
T Consensus 146 ~~~~~~~---------~~~~~~~V~E~ss~q~~~--~~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~ 214 (461)
T PRK00421 146 AAGTNAR---------LGNSDYFVAEADESDRSF--LKLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGAL 214 (461)
T ss_pred cCCcccc---------cCCCCEEEEECCCccchH--hhcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEE
Confidence 4322111 124688999999997643 24799999999999999999999999999999999888888999
Q ss_pred EEeCCChhhHHHHhccCcceeEeecCC--Cccccc---ccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHH
Q 017087 160 LLPFGNQHLNEAIKGHRFNLAWIGAFP--GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (377)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~ 234 (377)
|+|.||+....+.....+++++|+... ++.... ......|.+...+. .+....++++|.||++|+++|+ ++
T Consensus 215 V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~l~l~G~h~~~N~~aA~--a~ 290 (461)
T PRK00421 215 VACGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGE--VLGDFTLPLPGRHNVLNALAAI--AV 290 (461)
T ss_pred EEECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCc--eEEEEEecCCcHHHHHHHHHHH--HH
Confidence 999999988887765556677777532 111110 00111222221111 1222468999999999999999 88
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc----CCcEEEEec--CCCC----
Q 017087 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLG--GQAK---- 304 (377)
Q Consensus 235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G--~~~~---- 304 (377)
+..+|++++.|+++|++|++++||||++. ..+++.+|+|| +|||.++.++++.++ ++|+++|+| ++.+
T Consensus 291 ~~~lgv~~~~i~~~l~~f~~~~~R~e~~~-~~~g~~~i~D~-aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r~kd~ 368 (461)
T PRK00421 291 ALELGIDDEAIREALATFKGVKRRFEEKG-EVGGVVLIDDY-AHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRTRDL 368 (461)
T ss_pred HHHcCCCHHHHHHHHHhCCCCCcccEEEE-ecCCcEEEEeC-CCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCccHHHH
Confidence 99999999999999999999999999996 35688899996 999999988877663 268899998 2221
Q ss_pred ---------------------------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCccc
Q 017087 305 ---------------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASF 357 (377)
Q Consensus 305 ---------------------------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~ 357 (377)
.+.+++++.+.+++.+ ..+..++++++|++.+.+.+++||+||++ |+|++
T Consensus 369 ~~~~~~~l~~~d~vi~~~~~~~~e~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~~~a~~~a~~gD~vlv~-G~g~~ 445 (461)
T PRK00421 369 LDEFAEALSDADEVILLDIYAAGEEPIGGVDSEDLARKIKRGH--RDPIFVPDLEDLAELLAEVLKPGDLVLTM-GAGDI 445 (461)
T ss_pred HHHHHHHHHHCCEEEEcCccCCCCCCCCCCCHHHHHHHHhccC--CceEEeCCHHHHHHHHHHhcCCCCEEEEE-CCCCH
Confidence 1335577777776422 23456789999999999999999999885 88988
Q ss_pred ccccCh
Q 017087 358 DEFRNF 363 (377)
Q Consensus 358 ~~~~~~ 363 (377)
+.+...
T Consensus 446 ~~~~~~ 451 (461)
T PRK00421 446 TKLARA 451 (461)
T ss_pred HHHHHH
Confidence 776553
No 22
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=9.4e-56 Score=436.62 Aligned_cols=340 Identities=19% Similarity=0.293 Sum_probs=268.9
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCC--Ceeeecccc
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI--EAFVGGNLG 79 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~--~~~~~g~~g 79 (377)
.++||+||+|+++||++++|+++|+|++++++++++++ ++.++|+||||||||||++||+++|+.+|. .+.++|+++
T Consensus 59 ~d~vV~spgi~~~~p~~~~a~~~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~ 137 (448)
T TIGR01082 59 ADVVVVSAAIKDDNPEIVEAKERGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVK 137 (448)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcccc
Confidence 36899999999999999999999999999999999987 345899999999999999999999999997 566788888
Q ss_pred chhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhc-CCCCHHHHHHHHHHhcccCCCCce
Q 017087 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE-RHKTMKNYALTKCHLFSHMVNTKL 158 (377)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~-~~gt~e~~~~~K~~i~~~~~~~~~ 158 (377)
.+...... ...|++|+|+|++++.. ..++|+++|||||++||+| +|+|+|+|+++|.++++.+++++.
T Consensus 138 ~~~~~~~~---------~~~~~~V~E~s~~q~~~--~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~ 206 (448)
T TIGR01082 138 EAGTNARL---------GSGEYLVAEADESDASF--LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGL 206 (448)
T ss_pred cCCccccc---------CCCCEEEEECCCccchH--hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCE
Confidence 77654321 23578999999988765 3589999999999999999 889999999999999998888899
Q ss_pred EEEeCCChhhHHHHhccCcceeEeecCC-C--ccccc---ccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHH
Q 017087 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFP-G--VKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232 (377)
Q Consensus 159 ~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~ 232 (377)
+|+|.||+....+......++.+|+... . +.... ......|.+...+. ......++++|.||++|+++|+
T Consensus 207 ~V~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~G~hn~~N~~aA~-- 282 (448)
T TIGR01082 207 AVICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGK--LYLEFTLNLPGRHNVLNALAAI-- 282 (448)
T ss_pred EEEECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEecCccHhHHHHHHHHH--
Confidence 9999999998877655445677777531 1 11100 00011122211111 1112467899999999999999
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc----CCcEEEEecC--CCC--
Q 017087 233 VLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QAK-- 304 (377)
Q Consensus 233 a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G~--~~~-- 304 (377)
+++..+|++.+.+.++|++|++++||||++. ..+++.+|||| ||||.++.++++.+. .+|+++|+|+ +.+
T Consensus 283 a~~~~lgi~~~~i~~~l~~f~~~~~R~e~~~-~~~gv~~i~D~-ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r~k 360 (448)
T TIGR01082 283 AVALELGIDFEAILRALANFQGVKRRFEILG-EFGGVLLIDDY-AHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSRTR 360 (448)
T ss_pred HHHHHcCCCHHHHHHHHHhCCCCCccceEEE-EeCCeEEEEcC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCccHH
Confidence 8899999999999999999999999999996 35789999996 999999888776663 3478999985 322
Q ss_pred ------------------C-----------CCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCc
Q 017087 305 ------------------F-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355 (377)
Q Consensus 305 ------------------~-----------g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~ 355 (377)
. |.+.+++.+.+.+.+. .....++++++|++.+.+.+++||+||++ |+|
T Consensus 361 ~~~~~~~~~l~~~d~v~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~-~~~~~~~~~~~a~~~a~~~a~~gD~VLl~-G~g 438 (448)
T TIGR01082 361 DLFDDFAKVLSDADELILLDIYAAGEEPINGIDGKSLARKITQLGK-IEPYFVPDLAELVEFLAAVLQSGDLILTM-GAG 438 (448)
T ss_pred HHHHHHHHHHHhCCEEEEecccCCCCCCCCCCCHHHHHHHHhhcCC-CceEEeCCHHHHHHHHHHhcCCCCEEEEE-CCC
Confidence 1 5566778887764321 13456789999999999999999998885 888
Q ss_pred cccccc
Q 017087 356 SFDEFR 361 (377)
Q Consensus 356 s~~~~~ 361 (377)
+++.+.
T Consensus 439 ~~~~~~ 444 (448)
T TIGR01082 439 DIIKLA 444 (448)
T ss_pred CHHHHH
Confidence 877654
No 23
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=3.3e-55 Score=432.71 Aligned_cols=339 Identities=21% Similarity=0.254 Sum_probs=256.3
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCee-----eecc
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-----VGGN 77 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~-----~~g~ 77 (377)
++||+||+|+++||++++|+++|+|+++++++++++..+..++|+||||||||||++||+++|+++|.++. ..||
T Consensus 62 d~vV~SpgI~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn 141 (448)
T TIGR01081 62 DLVVIGNAMKRGNPCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGN 141 (448)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCccccc
Confidence 68999999999999999999999999999999988531233599999999999999999999999998763 5678
Q ss_pred ccchhhhhhhhcccCCCCCCCccEEEEEeCccccccC---Cc--cccccEEEEecCCcchhcCCCCHHHHHHHHHHhccc
Q 017087 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---NK--YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152 (377)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~---~~--~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~ 152 (377)
+|.|.. . .+.|++|+|+|++++... .. .++|+++|||||++||+|+|+|+|+|+++|.++++.
T Consensus 142 ~G~~~~---~---------~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~ 209 (448)
T TIGR01081 142 FGVSAR---L---------GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRT 209 (448)
T ss_pred Cccccc---c---------CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHh
Confidence 887753 1 135889999999876532 11 378999999999999999999999999999999998
Q ss_pred CCCCceEEEeCCChhhHHHHhc-cCcceeEeecCCCccccc-ccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHH
Q 017087 153 MVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (377)
Q Consensus 153 ~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~ 230 (377)
+++.+.+|+|.||+.+..+... ...++.+|+...++.... ......+.+...+.. ...+.++++|.||++|+++|+
T Consensus 210 ~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~Na~~A~ 287 (448)
T TIGR01081 210 VPGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADGSHFDVLLDGEK--VGEVKWSLVGRHNMHNALMAI 287 (448)
T ss_pred CCCCCEEEEeCCCHHHHHHHHhccCCCeEEECCCCCEEEEEEecCCcEEEEEECCce--eEEEEecCCcHHHHHHHHHHH
Confidence 7777899999999988765542 223445565322221100 001112222111111 111357899999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccC----CcEEEEecCCCC--
Q 017087 231 LSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG----HKCVILLGGQAK-- 304 (377)
Q Consensus 231 ~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~----~r~i~v~G~~~~-- 304 (377)
+++..+|++.+.++++|++|+++|||||++. ..+++.+|+|+ +|||+|++++++.++. +|+++|+|+.++
T Consensus 288 --a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~-~~~g~~ii~D~-ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~~~ 363 (448)
T TIGR01081 288 --AAARHVGVAIEDACEALGSFVNAKRRLELKG-EANGITVYDDF-AHHPTAIEATLQGLRQKVGGARILAVLEPRSNTM 363 (448)
T ss_pred --HHHHHcCCCHHHHHHHHHhCCCCCcceEEEE-ecCCeEEEEeC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCcchh
Confidence 8889999999999999999999999999996 34678999998 9999999999988752 467899986543
Q ss_pred -CCCChHH----------------------HHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCccccccc
Q 017087 305 -FGYSGVL----------------------IWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFR 361 (377)
Q Consensus 305 -~g~~~~~----------------------i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~ 361 (377)
+|...+. +.+.+...+ ..+..++++++|++.+.+.+++||+||+ .|+|+++.+.
T Consensus 364 ~lg~~~~~l~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~a~~gd~VLv-~gag~~~~~~ 440 (448)
T TIGR01081 364 KLGVHKDDLAPSLGRADQVFLYQPGQIPWDVAEVAAQCV--QPANVSADFDAFVAMIVKNAQPGDHILV-MSNGGFGGIH 440 (448)
T ss_pred hhhhHHHHHHHHHHhCCEEEEcCCCCCccCHHHHHHhcC--CCeEEcCCHHHHHHHHHHhCCCCCEEEE-ECCCCHHHHH
Confidence 2222222 333222211 1234568999999999999999999988 4899876644
Q ss_pred C
Q 017087 362 N 362 (377)
Q Consensus 362 ~ 362 (377)
.
T Consensus 441 ~ 441 (448)
T TIGR01081 441 G 441 (448)
T ss_pred H
Confidence 3
No 24
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=1.1e-53 Score=421.92 Aligned_cols=309 Identities=19% Similarity=0.283 Sum_probs=239.2
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc----ccchhhhhhhhcccCCCCCCCccEEEEEeCcc---ccccC
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QMEIP 114 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~---~l~~~ 114 (377)
+.++|+||||||||||++||+++|+..|.++.+.|+ +|.|.+... ..++.+++|+|+|+. .++..
T Consensus 99 ~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~t~gn~n~~~G~~~~~~~--------~~~~~~~~V~E~g~~~~gei~~~ 170 (453)
T PRK10773 99 PARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLLR--------LTPEHDYAVIELGANHQGEIAYT 170 (453)
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHHhcCcccccCccccCCcccccHHhc--------CCCCCcEEEEEcCCCCcchhHHh
Confidence 468999999999999999999999999988877777 455544322 134578999999963 34434
Q ss_pred CccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccCc-ceeEeecCC----Ccc
Q 017087 115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF-NLAWIGAFP----GVK 189 (377)
Q Consensus 115 ~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~-~~~~~~~~~----~~~ 189 (377)
...++|+++|||||++||+|+|||+|+|+++|.+||+.+++++.+|+|.|||....+...... ++.+|+... ++.
T Consensus 171 ~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~g~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ 250 (453)
T PRK10773 171 VSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFT 250 (453)
T ss_pred cCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCCCEEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEE
Confidence 456899999999999999999999999999999999988888999999999987766543332 456677431 111
Q ss_pred cc---cccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeecc
Q 017087 190 ID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266 (377)
Q Consensus 190 ~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~ 266 (377)
.. .......|.+...+... .+.+|++|+||++|+++|+ +++..+|+++++|+++|++|++++||||.+.. .
T Consensus 251 ~~~i~~~~~~~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~~-~ 324 (453)
T PRK10773 251 ATNIHVTSHGTEFTLHTPTGSV---DVLLPLPGRHNIANALAAA--ALAMSVGATLDAVKAGLANLKAVPGRLFPIQL-A 324 (453)
T ss_pred EEEEEEeCCeeEEEEEecCceE---EEEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEEEC-C
Confidence 11 01111122222111111 2478999999999999999 88999999999999999999999999999863 5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhccc--CCcEEEEecCCCCCCCChHHHHHHHH----hCCCC------C----------c
Q 017087 267 QGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKFGYSGVLIWKTLV----NNGLS------I----------P 324 (377)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~--~~r~i~v~G~~~~~g~~~~~i~~~l~----~~g~~------~----------~ 324 (377)
++.++|||+|||||+|++++++.+. ++|+++|+|+|.++|+.+++.++.+. +.+++ . .
T Consensus 325 ~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~G~~~~~~~~~~~~ 404 (453)
T PRK10773 325 EGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELGAESEACHRQVGEAAKAAGIDKVLSVGKLSHAISEASGV 404 (453)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcchHHHHHHHHHHHHHHHcCCCEEEEEChhHHHHHHhcCC
Confidence 6799999988999999999998774 35678999999999998887776553 22221 0 0
Q ss_pred ccccCCHHHHHHHHHHhcCCCC--EEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 325 CFAVANMKDAVNHARRMATNGD--AIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 325 ~~~~~~~~~ai~~a~~~~~~gd--ivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
..+++|.+++.+.+...+++|| +||++ | +||+.|+++++.
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~gd~~~vL~K---g---------sr~~~le~i~~~ 446 (453)
T PRK10773 405 GEHFADKTALIARLKALLAEHQVITILVK---G---------SRSAAMEEVVRA 446 (453)
T ss_pred CeeECCHHHHHHHHHHhhcCCCceEEEEE---e---------CCcCCHHHHHHH
Confidence 1346899999999999999999 58887 5 799999988863
No 25
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=1.1e-52 Score=411.05 Aligned_cols=308 Identities=21% Similarity=0.306 Sum_probs=235.5
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc----ccchhhhhhhhcccCCCCCCCccEEEEEeCc-c-c-cccC
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS-Y-Q-MEIP 114 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~-~-~-l~~~ 114 (377)
+.++|+||||||||||++||+++|+..|..+++.|+ +|.|.+... ...+++++|+|+|+ + + +...
T Consensus 73 ~~~vI~VTGTnGKTTt~~ll~~iL~~~g~~~~t~gn~n~~ig~p~~~l~--------~~~~~~~~VlE~g~s~~g~~~~~ 144 (417)
T TIGR01143 73 SGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLLR--------APGDHDYAVLEMGASHPGEIAYL 144 (417)
T ss_pred CCCEEEEcCCCchhHHHHHHHHHHhccCcEecCCCcCCCccchhHHHhc--------CCCCCeEEEEEeCCCCCCcHHHH
Confidence 468999999999999999999999999987767777 565655332 24578999999973 3 2 2223
Q ss_pred CccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccC-cceeEeecCC-Ccccc-
Q 017087 115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-FNLAWIGAFP-GVKID- 191 (377)
Q Consensus 115 ~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~-~~~~~~~~~~-~~~~~- 191 (377)
...++|+++|||||++||+|+|||+|+|+++|.++|+.+++++.+|+|.|||....+..... .++++|+... ++...
T Consensus 145 ~~~~~p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (417)
T TIGR01143 145 AEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEGGDFSAAD 224 (417)
T ss_pred hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCCCcEEEEE
Confidence 33579999999999999999999999999999999998888899999999998877765443 4567787432 11110
Q ss_pred --ccccc-ceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCC
Q 017087 192 --TEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268 (377)
Q Consensus 192 --~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~ 268 (377)
..... ..+.+...+... .+.+|++|.||++|+++|+ +++..+|+++++|+++|++|+++|||||+. ..++
T Consensus 225 i~~~~~~~~~~~~~~~~~~~---~~~~~l~G~hn~~N~laAi--a~~~~lGi~~~~i~~~l~~~~~~~gR~e~~--~~~~ 297 (417)
T TIGR01143 225 ISYSALGSTGFTLVAPGGEF---EVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRFEIQ--TKNG 297 (417)
T ss_pred EEEcCCCCEEEEEEeCCceE---EEEccCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEE--cCCC
Confidence 00011 123222211112 2368999999999999999 899999999999999999999999999944 3678
Q ss_pred eEEEEcCCCCCHHHHHHHHhcccC--CcEEEEecCCCCCCCChHHHHHH----HHhCCC-----------------CCcc
Q 017087 269 VTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKFGYSGVLIWKT----LVNNGL-----------------SIPC 325 (377)
Q Consensus 269 ~~iidD~~a~np~s~~~al~~~~~--~r~i~v~G~~~~~g~~~~~i~~~----l~~~g~-----------------~~~~ 325 (377)
+.+|||+|||||+|++++++.++. +|+++|+|++.+.|......+.. +.+..+ +...
T Consensus 298 ~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e~G~~~~~~~~~l~~~~~~~~~d~vi~~g~~~~~~~~~~~~~~ 377 (417)
T TIGR01143 298 LTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSEELHAEVGRYANSLGIDLVFLVGEEAAVIYDSLGCKG 377 (417)
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchhcChHHHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHhcccCc
Confidence 999999889999999999988852 58899999998877655433332 222111 1113
Q ss_pred cccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 326 FAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 326 ~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.++.+.+++++.+.+.+++||+||++ | +||+.|+++|+.
T Consensus 378 ~~~~~~~~~~~~l~~~~~~~d~VLlk---G---------Sr~~~le~~~~~ 416 (417)
T TIGR01143 378 FHFADKDELLAFLKLELGEGDVVLVK---G---------SRSVKLEKVVEA 416 (417)
T ss_pred EEECCHHHHHHHHHHhcCCCCEEEEE---e---------CCcCcHHHHHhh
Confidence 45689999999999999999999997 5 799999999874
No 26
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-50 Score=391.56 Aligned_cols=309 Identities=22% Similarity=0.344 Sum_probs=251.0
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc----ccchhhhhhhhcccCCCCCCCccEEEEEeCc---ccccc
Q 017087 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEI 113 (377)
Q Consensus 41 ~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~---~~l~~ 113 (377)
.+.++|+||||+|||||+.|++++|+..|....+.|| +|.|++..+. ..+.|++|+|+|. +++..
T Consensus 101 ~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~--------~~~~e~~VlEmG~~~~GeI~~ 172 (451)
T COG0770 101 FNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRL--------PADTEYAVLEMGMNHPGEIAE 172 (451)
T ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHhhcCeEecCCCccCccccchhHHHhC--------CCcccEEEEEcCCCCCCcHHH
Confidence 3678999999999999999999999999988777777 5778776654 4558999999996 35776
Q ss_pred CCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhcc-CcceeEeecCCCccccc
Q 017087 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDT 192 (377)
Q Consensus 114 ~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 192 (377)
+..+.+|+++|||||+.+|+++|||.|.++++|.+++..++++|.+|+|.|++....+.... ..++++|+.... .
T Consensus 173 l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~~~~~v~~fg~~~~----~ 248 (451)
T COG0770 173 LSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNG----G 248 (451)
T ss_pred HhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHHhhcCCCcEEEEcCCCC----C
Confidence 66678999999999999999999999999999999999999999999999999977666554 356788885410 1
Q ss_pred ccccceEEeccCCeeEEEE------eeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeecc
Q 017087 193 EAKTASFEVPAVGVVSQLQ------LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266 (377)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~------~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~ 266 (377)
+.....+.....+..+++. .+.+|++|+||+.|+++|+ ++|+.+|++.++|+++|+.+++++||||.+. ..
T Consensus 249 d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~--a~a~~lG~~~e~i~~~L~~~~~~~gR~~~~~-~~ 325 (451)
T COG0770 249 DFRATNIHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAA--ALALELGLDLEEIAAGLKELKPVKGRLEVIL-LA 325 (451)
T ss_pred ceeeEEEEEcCCceEEEEEecCceEEEEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCccceeEe-cC
Confidence 1122223333233333221 2589999999999999999 8999999999999999999999999999553 46
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhccc---CCcEEEEecCCCCCCCChHHHHHHHHh----CCC-----------------C
Q 017087 267 QGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKFGYSGVLIWKTLVN----NGL-----------------S 322 (377)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~---~~r~i~v~G~~~~~g~~~~~i~~~l~~----~g~-----------------~ 322 (377)
++.++|||+||.||+||+++++.+. .++.++|+|+|.++|+.++++++.+.+ .++ +
T Consensus 326 ~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~G~~~~~i~~~~~ 405 (451)
T COG0770 326 NGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVGELSKAIAEALG 405 (451)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhCccHHHHHHHHHHHHHhcCceEEEEEccchHHHHHhcC
Confidence 8899999999999999999988763 344499999999999988887776542 222 1
Q ss_pred CcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 323 IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 323 ~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
....++.+.++.++.+...+++||+|||+ + +||+.++++|..
T Consensus 406 ~~~~~f~~~~~l~~~l~~~l~~gd~vLvK---g---------Sr~~~le~vv~~ 447 (451)
T COG0770 406 NKGIYFADKEELITSLKALLRKGDVVLVK---G---------SRGMKLEKVVDA 447 (451)
T ss_pred CCeEecCCHHHHHHHHHHhcCCCCEEEEE---c---------CccccHHHHHHH
Confidence 12566788889999999999999999998 5 799999998863
No 27
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=9.5e-51 Score=403.32 Aligned_cols=310 Identities=19% Similarity=0.199 Sum_probs=235.2
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccc----cchhhhhhhhcccCCCCCCCccEEEEEeCc-cccc--cC
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----GNPLSEAAFHCIALPSSKPKFQVAVVEVSS-YQME--IP 114 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~----g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~-~~l~--~~ 114 (377)
+.++|+||||||||||++||+++|+..|.++.+.|++ |.|.+... ...+.+++|+|+|+ +..+ ..
T Consensus 107 ~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n~~iG~p~~l~~--------~~~~~~~~V~E~g~s~~~e~~~~ 178 (479)
T PRK14093 107 EAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPLSLAR--------CPADARFAVFEIGMNHAGEIEPL 178 (479)
T ss_pred CCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCCCccchhHHHHc--------CCCCCcEEEEEeCCCCCchHHHH
Confidence 5689999999999999999999999999887776664 44543221 13467899999994 4333 23
Q ss_pred CccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccC----cceeEeecCCC--c
Q 017087 115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR----FNLAWIGAFPG--V 188 (377)
Q Consensus 115 ~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~----~~~~~~~~~~~--~ 188 (377)
...++|+++|||||++||+|+|+|+|+|+++|.++|+.+++++.+|+|.|||....+..... .++++||.... +
T Consensus 179 ~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~~~~~~~~~~vi~~g~~~~~~~ 258 (479)
T PRK14093 179 VKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGADEKADA 258 (479)
T ss_pred hcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHHHhhhccCCcEEEEeCCCCccE
Confidence 34589999999999999999999999999999999998878899999999999877654322 25678875321 1
Q ss_pred cccc---ccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeec
Q 017087 189 KIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265 (377)
Q Consensus 189 ~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~ 265 (377)
.... ......+.+...+... .+.+|++|.||++|+++|+ +++..+|+++++|+++|++|++++||||.+..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~l~~~~~~~gR~~~~r~~ 333 (479)
T PRK14093 259 RLLDVALHADCSAVHADILGHDV---TYKLGMPGRHIAMNSLAVL--AAAELAGADLALAALALSQVQPAAGRGVRHTLE 333 (479)
T ss_pred EEEEEEEcCCceEEEEEECCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCcCCcceEEEee
Confidence 1110 0111122222111112 2478999999999999999 889999999999999999999999999987421
Q ss_pred --cCCeEEEEcCCCCCHHHHHHHHhccc------CCcEEEEecCCCCCCCChHHHHHHH----HhCCCC-----------
Q 017087 266 --IQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKFGYSGVLIWKTL----VNNGLS----------- 322 (377)
Q Consensus 266 --~~~~~iidD~~a~np~s~~~al~~~~------~~r~i~v~G~~~~~g~~~~~i~~~l----~~~g~~----------- 322 (377)
.++.++|||+|||||+|++++|+.++ ++|+++|||+|.++|..+.+.++.+ .+.+.+
T Consensus 334 ~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~h~~~~~~~~~~~~d~v~~~G~~~~~ 413 (479)
T PRK14093 334 VGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGPELHRGLAEAIRANAIDLVFCCGPLMRN 413 (479)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHHHHHHHHHHHHHHcCCCEEEEEchhHHH
Confidence 24589999988999999999988763 3589999999988887765554433 211110
Q ss_pred -------C-cccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 323 -------I-PCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 323 -------~-~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
. ...+++|.+++.+++...+++||+||++ | +||+.|+++|+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gd~vL~k---G---------Sr~~~le~i~~~ 463 (479)
T PRK14093 414 LWDALSSGKRGGYAEDAAALESQVVAAIRAGDVIMVK---G---------SLGSRMKTIVTA 463 (479)
T ss_pred HHHhhcccccceeeCCHHHHHHHHHHhcCCCCEEEEE---c---------CCcCCHHHHHHH
Confidence 0 1134689999999999999999999998 6 799999988863
No 28
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=2.5e-49 Score=391.76 Aligned_cols=303 Identities=24% Similarity=0.308 Sum_probs=229.5
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhh-cccCCC-----------CCCCccEEEEEeCcc
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH-CIALPS-----------SKPKFQVAVVEVSSY 109 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~-~~~~~~-----------~~~~~~~~ViE~~~~ 109 (377)
+.++||||||||||||++||+++|+++|.++++.||++.++....+. ..+++. ...++|++|+|+|++
T Consensus 94 ~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~ 173 (460)
T PRK00139 94 KLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSSH 173 (460)
T ss_pred ccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccccCCeecccCCCCcCHHHHHHHHHHHHHCCCCEEEEEcchh
Confidence 56899999999999999999999999999999999988776542211 011111 145679999999987
Q ss_pred ccccCC-ccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccCcceeEeecC-CC
Q 017087 110 QMEIPN-KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-PG 187 (377)
Q Consensus 110 ~l~~~~-~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~-~~ 187 (377)
+++..+ ..++|+++|||||++||+++|||+|+|+++|++|++.. .+.+|+|.||+....+... ..+|+.. ..
T Consensus 174 ~~~~~~l~~~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~--~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~ 247 (460)
T PRK00139 174 ALDQGRVDGLKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSEL--GLAAVINADDEVGRRLLAL----PDAYAVSMAG 247 (460)
T ss_pred hHhhchhcCCcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcC--CCeEEEEcCcHhHHHHHhh----cEEEEecCCC
Confidence 764322 13789999999999999999999999999999999864 2489999999987766542 3345432 11
Q ss_pred cccccccccceEEeccCCeeEEEE-eeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeecc
Q 017087 188 VKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266 (377)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~ 266 (377)
. +.....+.....+..+.+. .+.++++|+||++|+++|+ +++..+|+++++|+++|++|++++||||++. ..
T Consensus 248 ~----~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~ 320 (460)
T PRK00139 248 A----DLRATDVEYTDSGQTFTLVTEVESPLIGRFNVSNLLAAL--AALLALGVPLEDALAALAKLQGVPGRMERVD-AG 320 (460)
T ss_pred C----cEEEEEEEEecCceEEEEEEEEEecccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEE-cC
Confidence 1 1111122222223333332 3578999999999999999 8899999999999999999999999999995 24
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhccc---CCcEEEEecCCC-C--------------------------CCCChHHHHHHH
Q 017087 267 QGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQA-K--------------------------FGYSGVLIWKTL 316 (377)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~---~~r~i~v~G~~~-~--------------------------~g~~~~~i~~~l 316 (377)
+++.+|+| |||||+|++++++.+. ++|+++|+|+.. + .++++.++.+.+
T Consensus 321 ~~~~iI~D-yahNP~s~~aal~~l~~~~~~r~i~VlG~g~~k~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~i~~~~ 399 (460)
T PRK00139 321 QGPLVIVD-YAHTPDALEKVLEALRPHAKGRLICVFGCGGDRDKGKRPLMGAIAERLADVVIVTSDNPRSEDPAAIIADI 399 (460)
T ss_pred CCCEEEEE-CCCCHHHHHHHHHHHHhhcCCcEEEEECCCCCCchhhhHHHHHHHHHcCCEEEEECCCCCCCCHHHHHHHH
Confidence 67899999 5999999999999885 368899998532 1 223445566665
Q ss_pred HhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEc-CCCcccccccC
Q 017087 317 VNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 362 (377)
Q Consensus 317 ~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~-~g~~s~~~~~~ 362 (377)
.+ +. ...++|+++|++.+.+.+++||+||++ +|++.|+.+++
T Consensus 400 ~~-~~---~~~~~d~~~Ai~~~~~~~~~gDvVLv~G~G~e~~~~~~~ 442 (460)
T PRK00139 400 LA-GI---YDVIEDRAEAIRYAIAQAKPGDVVLIAGKGHEDYQIIGG 442 (460)
T ss_pred Hh-CC---CcccCCHHHHHHHHHHhcCCCCEEEEEEccCcccEEECC
Confidence 43 21 234689999999999999999999986 77777876665
No 29
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=4e-49 Score=414.03 Aligned_cols=334 Identities=14% Similarity=0.172 Sum_probs=247.5
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCC--eeeeccccc
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLGN 80 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~--~~~~g~~g~ 80 (377)
++||+||+++++||++++|+++|+|++++++++++++ +..++|+||||||||||++||+++|+.+|.+ +.++|++|.
T Consensus 65 d~vV~SpgI~~~~p~~~~a~~~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~~g~ 143 (809)
T PRK14573 65 AVVVYSSSISKDNVEYLSAKSRGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQE 143 (809)
T ss_pred CEEEECCCcCCCCHHHHHHHHCCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCcccc
Confidence 6899999999999999999999999999999999887 4458999999999999999999999999975 457888887
Q ss_pred hhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhcccCCCCceE
Q 017087 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~ 159 (377)
|+... ..+.|++|+|+|+++ ... ..++|+++|||||++||+|+| +|+|+|+++|..+++.+++.+.+
T Consensus 144 ~~~~~----------~~~~d~~V~E~ss~~-~~~-~~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~ 211 (809)
T PRK14573 144 GLNGY----------SGSSEYFVAEADESD-GSL-KHYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKC 211 (809)
T ss_pred ccccc----------cCCCCEEEEECCCCc-chh-heeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEE
Confidence 76532 123688999999986 322 258999999999999999988 79999999999999877778999
Q ss_pred EEeCCChhhHHHHhccCcceeEeecCC--Ccc---cccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHH
Q 017087 160 LLPFGNQHLNEAIKGHRFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (377)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~ 234 (377)
|+|.||+...... +..+|+... ++. +..+.....+.+...+. .+....++++|.||++|+++|+ ++
T Consensus 212 V~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~--~~~~~~l~l~G~hn~~Na~aAi--a~ 282 (809)
T PRK14573 212 FYNGDCPRLKGCL-----QGHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGV--VYQDIELNLVGMHNVANAAAAM--GI 282 (809)
T ss_pred EEeCCCHHHHhhc-----ccEEEccCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEeccccHhhHHHHHHHH--HH
Confidence 9999999765432 123454321 111 00011111122211111 1123468899999999999999 88
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc----CCcEEEEecCCCC------
Q 017087 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK------ 304 (377)
Q Consensus 235 ~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G~~~~------ 304 (377)
+..+|++.+.|+++|++|++++||||++. ..+++.+|+|| ||||++++++++.+. .+|+++|+++.+.
T Consensus 283 ~~~lgi~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~i~D~-ahnP~~~~a~l~~l~~~~~~~rli~vf~~~~~~~~~~~ 360 (809)
T PRK14573 283 ALTLGIDEGAIRNALKGFSGVQRRLERKN-SSETFLFLEDY-AHHPSEISCTLRAVRDAVGLRRIIAICQPHRFSRLREC 360 (809)
T ss_pred HHHcCCCHHHHHHHHHhCCCCCCCCEEEe-ccCCcEEEEEC-CCCHHHHHHHHHHHHhhcCCCEEEEEEcCCcchhHHHH
Confidence 89999999999999999999999999996 35678899995 999999999988773 3678999984321
Q ss_pred ---------------------C------CCChHHHHHHHHhCCC-CCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcc
Q 017087 305 ---------------------F------GYSGVLIWKTLVNNGL-SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCAS 356 (377)
Q Consensus 305 ---------------------~------g~~~~~i~~~l~~~g~-~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s 356 (377)
. +.+++++.+.++..+. .......++..+++. ..++++|++|+ .++||
T Consensus 361 ~~~~~~~l~~~d~vilt~~~~~~e~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~al~---~~~~~~d~~~i-l~~GS 436 (809)
T PRK14573 361 LDSFPSAFQDADEVILTDVYSAGEEPEDSISYQKLAEAISQSSIVKCTYVPFHEIQRYLE---QSIRVHDVCVS-LGAGN 436 (809)
T ss_pred HHHHHHHHHHCCEEEECCccCCCCCCCCCCCHHHHHHHHhhcCCCceeecCHHHHHHHHH---HhcCCCCEEEE-ECCCC
Confidence 1 2345667776653210 001112233444443 33456687655 47899
Q ss_pred cccccChH
Q 017087 357 FDEFRNFE 364 (377)
Q Consensus 357 ~~~~~~~~ 364 (377)
|+.+.+..
T Consensus 437 ly~i~~~~ 444 (809)
T PRK14573 437 IYTLGEAL 444 (809)
T ss_pred HHHHHHHH
Confidence 99876643
No 30
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=3.6e-49 Score=391.61 Aligned_cols=312 Identities=24% Similarity=0.345 Sum_probs=228.9
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchhhhh-hh---hcccCC-----------CCCCCccEEEEEe
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA-AF---HCIALP-----------SSKPKFQVAVVEV 106 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~-~~---~~~~~~-----------~~~~~~~~~ViE~ 106 (377)
+.++|+||||||||||++||+++|+.+|+++++.++.|.+.... .+ ...+++ ..+.+.+++|+|+
T Consensus 84 ~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~ 163 (464)
T TIGR01085 84 KLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAGAQYAVMEV 163 (464)
T ss_pred ccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 56899999999999999999999999999988888777653321 10 001111 0134679999999
Q ss_pred Cccccc--cCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccCcceeEeec
Q 017087 107 SSYQME--IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA 184 (377)
Q Consensus 107 ~~~~l~--~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~ 184 (377)
|+++++ .+.. ++|+++|||||++||+++|||+|+|+++|.++++.++++|.+|+|.|||....+.......+.++..
T Consensus 164 g~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~ 242 (464)
T TIGR01085 164 SSHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAI 242 (464)
T ss_pred cHHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEe
Confidence 987654 3333 7999999999999999999999999999999999887788999999999887766543332222211
Q ss_pred CC-------Cccccc---ccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcC-CCHHHHHHHhhcCC
Q 017087 185 FP-------GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILR 253 (377)
Q Consensus 185 ~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lg-i~~~~i~~~l~~~~ 253 (377)
.. ++.... ......|.+...+... .+.+|++|.||++|+++|+ +++..+| ++++.|+++|++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~a~~lg~i~~e~i~~~L~~~~ 317 (464)
T TIGR01085 243 TQPADGRAQDIKITDSGYSFEGQQFTFETPAGEG---HLHTPLIGRFNVYNLLAAL--ATLLHLGGIDLEDIVAALEKFR 317 (464)
T ss_pred cCCCccccccEEEEEEEEecCceEEEEEeCCceE---EEEecCccHhHHHHHHHHH--HHHHHcCCCCHHHHHHHHHhCC
Confidence 11 110000 0001122222111111 2368999999999999999 8889999 99999999999999
Q ss_pred CCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc---CCcEEEEec-CCCC-------------------------
Q 017087 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLG-GQAK------------------------- 304 (377)
Q Consensus 254 ~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~r~i~v~G-~~~~------------------------- 304 (377)
+++||||++.. .+++.+|+| |+|||+|++++++.+. ++|+++|+| +..+
T Consensus 318 ~~~gR~e~~~~-~~g~~vi~D-y~~NP~s~~aal~~l~~~~~~r~i~VlGlg~~~~~~~~~~~~~~~~~~~d~vi~~g~~ 395 (464)
T TIGR01085 318 GVPGRMELVDG-GQKFLVIVD-YAHTPDALEKALRTLRKHKDGRLIVVFGCGGDRDRGKRPLMGAIAEQLADLVILTSDN 395 (464)
T ss_pred CCCCCcEEEEc-CCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCcEEEEECCCCCCCcchhHHHHHHHHhcCCEEEEeCCC
Confidence 99999999962 457899999 5999999999998884 367899999 3221
Q ss_pred -CCCChHHHHHHHHhCCCCC--cccccCCHHHHHHHHHHhcCCCCEEEEc-CCCcccccccC
Q 017087 305 -FGYSGVLIWKTLVNNGLSI--PCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 362 (377)
Q Consensus 305 -~g~~~~~i~~~l~~~g~~~--~~~~~~~~~~ai~~a~~~~~~gdivli~-~g~~s~~~~~~ 362 (377)
.++++..+.+.+.+ +... .+..++|+++|++++.+.+++||+||++ +|+.+|+.+++
T Consensus 396 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~d~VLv~G~g~~~~~~~~~ 456 (464)
T TIGR01085 396 PRGEDPEQIIADILA-GISEKEKVVIIADRRQAIRYAISNAKAGDVVLIAGKGHEDYQIIGG 456 (464)
T ss_pred cCCCCHHHHHHHHHh-cccCCCcEEEECCHHHHHHHHHHhcCCCCEEEEEEcCCcccEEECC
Confidence 13344555444432 2211 2445799999999999999999999996 88888887765
No 31
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=6.5e-49 Score=420.54 Aligned_cols=309 Identities=19% Similarity=0.259 Sum_probs=234.5
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCC---CCeeeecc----ccchhhhhhhhcccCCCCCCCccEEEEEeCcc---cc
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHLG---IEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QM 111 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~g---~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~---~l 111 (377)
+.++|+||||||||||++||+++|+.+| ..+.+.|+ +|.|.+... ...+.+++|+|+|++ ++
T Consensus 602 ~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~--------~~~~~~~~VlE~s~~~~g~~ 673 (958)
T PRK11929 602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLR--------LRAQHRAAVFELGMNHPGEI 673 (958)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhc--------CCCCCcEEEEEeCCCCCccH
Confidence 5689999999999999999999999984 34455666 455554332 134678999999976 44
Q ss_pred ccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhcc-CcceeEeecCCCccc
Q 017087 112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKI 190 (377)
Q Consensus 112 ~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~ 190 (377)
+.....++||++|||||++||+|+|+|+|+|+++|+++|+.+++++.+|+|.|||....+.... ..++++|+......+
T Consensus 674 ~~~~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~~ 753 (958)
T PRK11929 674 AYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADV 753 (958)
T ss_pred HHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcce
Confidence 4444457999999999999999999999999999999999888889999999999887765433 234677875321111
Q ss_pred c-----cc-----cccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeee
Q 017087 191 D-----TE-----AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260 (377)
Q Consensus 191 ~-----~~-----~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e 260 (377)
. .+ .....+.+...+... .+.+|++|.||++|+++|+ +++..+|+++++++++|++|+++|||||
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e 828 (958)
T PRK11929 754 YAEKIAKDISVGEAGGTRCQVVTPAGSA---EVYLPLIGEHNLRNALAAI--ACALAAGASLKQIRAGLERFQPVAGRMQ 828 (958)
T ss_pred EeeecccceeecCCCceEEEEEECCceE---EEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCCce
Confidence 0 00 001112221111111 2368999999999999999 8999999999999999999999999999
Q ss_pred EEeeccCCeEEEEcCCCCCHHHHHHHHhcccC---CcEEEEecCCCCCCCChHHHHH----HHHhCCC------------
Q 017087 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKG---HKCVILLGGQAKFGYSGVLIWK----TLVNNGL------------ 321 (377)
Q Consensus 261 ~~~~~~~~~~iidD~~a~np~s~~~al~~~~~---~r~i~v~G~~~~~g~~~~~i~~----~l~~~g~------------ 321 (377)
++.. .+++.+|||+|||||+|++++|+.+.. +|+++|+|++.++|+.+...+. .+.+...
T Consensus 829 ~~~~-~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~~~h~~~g~~~~~~~~~~vi~~Ge~~~~ 907 (958)
T PRK11929 829 RRRL-SCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGPAMHREVGKYARQLGIDALITLGEAARD 907 (958)
T ss_pred EEEc-CCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHHHHHHHHHHHHHHcCCCEEEEECcCHHH
Confidence 9963 578999999889999999999988852 5789999999886665544332 2211111
Q ss_pred -----C-CcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 322 -----S-IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 322 -----~-~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
. .....++|+++|++++.+.+++||+||++ | +||+.|+++|+.
T Consensus 908 i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gD~VLlk---G---------Sr~~~le~~~~~ 956 (958)
T PRK11929 908 AAAAFGAGARGVCASVDEIIAALRGALPEGDSVLIK---G---------SRFMRLERVVDA 956 (958)
T ss_pred HHHhhhcccceeeCCHHHHHHHHHHhcCCCCEEEEE---e---------CccCcHHHHHHh
Confidence 0 00123689999999999999999999998 6 899999999864
No 32
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=6e-48 Score=413.10 Aligned_cols=314 Identities=23% Similarity=0.318 Sum_probs=235.1
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhh-cccCC-----------CCCCCccEEEEEeCc
Q 017087 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH-CIALP-----------SSKPKFQVAVVEVSS 108 (377)
Q Consensus 41 ~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~-~~~~~-----------~~~~~~~~~ViE~~~ 108 (377)
++.++||||||||||||++||+++|+.+|+++++.|++|.++....+. ..+++ ....++|++|+|+|+
T Consensus 110 ~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss 189 (958)
T PRK11929 110 EQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAAGADAVAMEASS 189 (958)
T ss_pred hccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCccccCCCeeeecCCCCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 357899999999999999999999999999999999988865443221 11221 114578999999998
Q ss_pred cccccCCc-cccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccCc--ceeEeecC
Q 017087 109 YQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF--NLAWIGAF 185 (377)
Q Consensus 109 ~~l~~~~~-~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~--~~~~~~~~ 185 (377)
++++..+. .++|+++|||||++||+++|||+|+|+++|++||+.+++++.+|+|.|||....+...... .+.+++..
T Consensus 190 ~~l~~~rl~~~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~ 269 (958)
T PRK11929 190 HGLEQGRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQN 269 (958)
T ss_pred chHhhCcccccccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEeeC
Confidence 87753222 2689999999999999999999999999999999988888999999999998777654321 33344422
Q ss_pred --CCcccc---cccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeee
Q 017087 186 --PGVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260 (377)
Q Consensus 186 --~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e 260 (377)
.++... .......|.+...+.... +.+|++|+||++|+++|+ +++..+|+++++|+++|++|+++|||||
T Consensus 270 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~I~~~L~~~~~~~gR~e 344 (958)
T PRK11929 270 AGADVQARDLRATAHGQVFTLATPDGSYQ---LVTRLLGRFNVSNLLLVA--AALKKLGLPLAQIARALAAVSPVPGRME 344 (958)
T ss_pred CCccEEEEEEEEcCCceEEEEEeCCceEE---EEecCccHhhHHHHHHHH--HHHHHcCCCHHHHHHHHhcCCCCCCCcE
Confidence 122111 011112233322211122 368999999999999999 8899999999999999999999999999
Q ss_pred EEe--eccCCeEEEEcCCCCCHHHHHHHHhccc------CCcEEEEecCCCC---------------------------C
Q 017087 261 IVH--RDIQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAK---------------------------F 305 (377)
Q Consensus 261 ~~~--~~~~~~~iidD~~a~np~s~~~al~~~~------~~r~i~v~G~~~~---------------------------~ 305 (377)
++. ...+++.+|+|| ||||+|++++++.++ .+|+++|+|...+ +
T Consensus 345 ~i~~~~~~~~~~vi~Dy-ahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~g~~r~~~~~~~~~~~~~~~~d~vi~t~~~pr 423 (958)
T PRK11929 345 RVGPTAGAQGPLVVVDY-AHTPDALAKALTALRPVAQARNGRLVCVFGCGGDRDKGKRPEMGRIAAELADRVVVTSDNPR 423 (958)
T ss_pred EeccccCCCCCEEEEEC-CCCHHHHHHHHHHHHHhcccCCCcEEEEECCCCCCCcchhHHHHHHHHHhCCEEEEcCCCCC
Confidence 993 113577888895 999999999998875 2578999985321 4
Q ss_pred CCChHHHHHHHHhCCCC--CcccccCCHHHHHHHHHHhcCCCCEEEEc-CCCccccccc
Q 017087 306 GYSGVLIWKTLVNNGLS--IPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFR 361 (377)
Q Consensus 306 g~~~~~i~~~l~~~g~~--~~~~~~~~~~~ai~~a~~~~~~gdivli~-~g~~s~~~~~ 361 (377)
+++++.|.+.+.. +++ ..+..++|+++|++.+.+.+++||+||++ +|++.|+.+.
T Consensus 424 ~e~p~~i~~~i~~-~~~~~~~~~~~~d~~~Ai~~a~~~a~~gD~VLv~GsG~e~~~~~~ 481 (958)
T PRK11929 424 SEAPEAIIDQILA-GIPAGARVFVISDRAEAIRQAIWMAAPGDVILIAGKGHETYQEIG 481 (958)
T ss_pred CCCHHHHHHHHHh-hccCCCceEEECCHHHHHHHHHHhcCCCCEEEEeecCcchheEEC
Confidence 4567788877753 332 13566799999999999999999999986 5555555443
No 33
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=5.4e-48 Score=406.41 Aligned_cols=306 Identities=17% Similarity=0.221 Sum_probs=232.7
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc----ccchhhhhhhhcccCCCCCCCccEEEEEeCccc---ccc
Q 017087 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ---MEI 113 (377)
Q Consensus 41 ~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~---l~~ 113 (377)
.+.++||||||||||||++||+++|+..|..+.+.++ +|.|.+... ...+.+++|+|+|+++ ++.
T Consensus 105 ~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~~~~~n~~ig~p~~~~~--------~~~~~~~~V~E~s~s~~~~~~~ 176 (822)
T PRK11930 105 FDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQ--------LNEEHELGIFEAGISQPGEMEA 176 (822)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecCCcccCcchhHHHHHhc--------CCCCCcEEEEEeCCCCCChHHH
Confidence 4678999999999999999999999998876655443 577765432 1356789999999653 233
Q ss_pred CCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhcc--CcceeEeecCC---Cc
Q 017087 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP---GV 188 (377)
Q Consensus 114 ~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~--~~~~~~~~~~~---~~ 188 (377)
....++||++|||||++||+|+|+|+|+|+++|.++|+. .+.+|+|.||+....+.... ..++++|+... ++
T Consensus 177 l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 253 (822)
T PRK11930 177 LQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPL 253 (822)
T ss_pred HhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcE
Confidence 333578999999999999999999999999999999984 47899999999887655322 23466777431 11
Q ss_pred ccc---cccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeec
Q 017087 189 KID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265 (377)
Q Consensus 189 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~ 265 (377)
... .......+.+...+... .+.+|++|+||++|+++|+ +++..+|++++++.++|++|+++|||||++. .
T Consensus 254 ~~~~i~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~-~ 327 (822)
T PRK11930 254 YIPFVEKKEDHTVISYTYKGEDF---HFEIPFIDDASIENLIHCI--AVLLYLGYSADQIQERMARLEPVAMRLEVKE-G 327 (822)
T ss_pred EEEEEEEcCCceEEEEEeCCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCeeEEEE-c
Confidence 111 01111223322222111 2478999999999999999 8899999999999999999999999999996 3
Q ss_pred cCCeEEEEcCCCCCHHHHHHHHhccc----CCcEEEEecCCCCCCCChHHHHHHH----HhCCC----------------
Q 017087 266 IQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKFGYSGVLIWKTL----VNNGL---------------- 321 (377)
Q Consensus 266 ~~~~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G~~~~~g~~~~~i~~~l----~~~g~---------------- 321 (377)
.+++.+|||+|||||+|++++|+.++ ++|+++|+|++.++|+.+..+++.+ ...++
T Consensus 328 ~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~~~~~~~l~~~l~~~~i~~vi~~G~~~~~~~~~ 407 (822)
T PRK11930 328 INNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSPEELYRKVAQLISKRGIDRLIGIGEEISSEASK 407 (822)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchHHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHh
Confidence 57899999988999999999999885 2478999999999888776655443 32111
Q ss_pred -C-CcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHh
Q 017087 322 -S-IPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAF 375 (377)
Q Consensus 322 -~-~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~ 375 (377)
. ..+.+++|.++|++.+.+.+++||+||++ | +|++.|+++|+
T Consensus 408 ~~~~~~~~~~~~e~a~~~l~~~~~~gDvVLlK---G---------Sr~~~le~i~~ 451 (822)
T PRK11930 408 FEGTEKEFFKTTEAFLKSFAFLKFRNELILVK---G---------ARKFEFEQITE 451 (822)
T ss_pred cCccccEEECCHHHHHHHHHHhcCCCCEEEEE---c---------CCCCCHHHHHH
Confidence 0 12345789999999999999999999997 4 56777777664
No 34
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=1.9e-47 Score=380.27 Aligned_cols=306 Identities=23% Similarity=0.320 Sum_probs=219.3
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhh-cccCC-----------CCCCCccEEEEEeCc
Q 017087 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH-CIALP-----------SSKPKFQVAVVEVSS 108 (377)
Q Consensus 41 ~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~-~~~~~-----------~~~~~~~~~ViE~~~ 108 (377)
.+.++||||||||||||++||+++|+..|.++++.|+.|......... .+++| ..+.+.+++|+|+||
T Consensus 108 ~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~~~~~e~g~~~~v~EvsS 187 (481)
T PRK14022 108 HKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKSALTTPESLDLFKMMAEAVDNGMTHLIMEVSS 187 (481)
T ss_pred hccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeeccCCeeeeCCCCCchHHHHHHHHHHHHHCCCCEEEEEech
Confidence 456899999999999999999999999998887777644332211000 00111 113467889999999
Q ss_pred cccccCCc-cccccEEEEecCCcchhcC--CCCHHHHHHHHHHhcccCCCCceEEEeCC-ChhhHHHHhccCcceeEeec
Q 017087 109 YQMEIPNK-YFCPTVSVVLNLTPDHLER--HKTMKNYALTKCHLFSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIGA 184 (377)
Q Consensus 109 ~~l~~~~~-~~~p~i~ViTni~~dHl~~--~gt~e~~~~~K~~i~~~~~~~~~~v~n~d-d~~~~~~~~~~~~~~~~~~~ 184 (377)
+++...+. .++|+++|||||++||+++ |+|+|+|+++|++|++ +++.+|+|.| |+...........++++|+.
T Consensus 188 ~~~~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~~~~~~~~g~ 264 (481)
T PRK14022 188 QAYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDFYGI 264 (481)
T ss_pred hHHHhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhcCCCEEEEec
Confidence 87443222 3789999999999999999 8999999999999996 4678999998 55433222222235667775
Q ss_pred CCCcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEee
Q 017087 185 FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264 (377)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~ 264 (377)
.....+... ..+.+...+.. ...+.++++|+||++|+++|+ +++..+|+++++|+++|++ +++|||||++.
T Consensus 265 ~~~~~~~~~---~~~~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~i~~~L~~-~~~~gR~e~i~- 335 (481)
T PRK14022 265 DSENQIMAS---NAFSFEATGKL--AGTYDIQLIGKFNQENAMAAG--LACLRLGASLEDIQKGIAQ-TPVPGRMEVLT- 335 (481)
T ss_pred CCccceEEE---EEEEEEEcccC--CceEEEEEechhhHHHHHHHH--HHHHHcCCCHHHHHHHhcc-CCCCCCeEEEE-
Confidence 321111100 02322211100 001256799999999999999 8899999999999999999 99999999996
Q ss_pred ccCCeEEEEcCCCCCHHHHHHHHhccc---CCcEEEEecCCCC----------------------------CCCChHHHH
Q 017087 265 DIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAK----------------------------FGYSGVLIW 313 (377)
Q Consensus 265 ~~~~~~iidD~~a~np~s~~~al~~~~---~~r~i~v~G~~~~----------------------------~g~~~~~i~ 313 (377)
..+++.+|+| |||||+|++++++.++ ++|+++|+|.+.+ ++++++.+.
T Consensus 336 ~~~g~~vi~D-yahNP~s~~aal~~l~~~~~~r~i~V~G~~~e~g~~~~~~~~~~~~~~~~~~vi~~~~~~r~e~~~~i~ 414 (481)
T PRK14022 336 QSNGAKVFID-YAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNKGESRRPDFGRVANRHPYLQVILTADDPNNEDPKMIT 414 (481)
T ss_pred CCCCCEEEEE-CCCCHHHHHHHHHHHhhhCCCCEEEEECCCCCCCcchhHHHHHHHHhcCCceEEEccCCCCCCCHHHHH
Confidence 2467889999 5999999999998874 4689999997654 234556677
Q ss_pred HHHHhCCCCCcccccCCHHHHHHHHHHhcC-CCCEEEEc-CCCcccccc
Q 017087 314 KTLVNNGLSIPCFAVANMKDAVNHARRMAT-NGDAIVLS-PGCASFDEF 360 (377)
Q Consensus 314 ~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~-~gdivli~-~g~~s~~~~ 360 (377)
+.+.. +.+..+..++|+++|++.+.+.++ +||+||++ +|+..++.+
T Consensus 415 ~~i~~-~~~~~~~~~~d~~~Ai~~a~~~a~~~gD~VLi~G~G~~~~~~~ 462 (481)
T PRK14022 415 QEIAS-HITHPVEIIDDRAEAIKHAMSITEGPGDAVIIAGKGADAYQIV 462 (481)
T ss_pred HHHHh-cCCCCeEEECCHHHHHHHHHHhcCCCCCEEEEEecCCcceEEE
Confidence 76653 211234557899999999999999 99999985 555444444
No 35
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-46 Score=368.02 Aligned_cols=313 Identities=24% Similarity=0.344 Sum_probs=242.6
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhh--hcccCCC-----------CCCCccEEEEEeC
Q 017087 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF--HCIALPS-----------SKPKFQVAVVEVS 107 (377)
Q Consensus 41 ~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~--~~~~~~~-----------~~~~~~~~ViE~~ 107 (377)
++.++|+||||||||||++++.++++..|.++++.|+.|..++.... ...+||. .+...++++||++
T Consensus 89 ~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvs 168 (475)
T COG0769 89 GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVS 168 (475)
T ss_pred cCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcEEEEEee
Confidence 36899999999999999999999999999999988887765531111 1245553 2567899999999
Q ss_pred ccccccCCcc-ccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHH---HHhccCcceeEee
Q 017087 108 SYQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNE---AIKGHRFNLAWIG 183 (377)
Q Consensus 108 ~~~l~~~~~~-~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~---~~~~~~~~~~~~~ 183 (377)
++++...+.. ...+++++||+++||+|+|+|+|+|..+|..+|..++..+.+|+|.||++... .......+.++++
T Consensus 169 sh~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~ 248 (475)
T COG0769 169 SHGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYG 248 (475)
T ss_pred hhHHHhCCccCceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhcCCCEEEeC
Confidence 9998766554 46799999999999999999999999999999986677889999999999843 3333333567777
Q ss_pred cCCCcc------cccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 017087 184 AFPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257 (377)
Q Consensus 184 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~g 257 (377)
...... ++....+..+.+...+... ...+|++|.||++|+|+|+ +++..+|+|+++|.++++++++++|
T Consensus 249 ~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~---~~~~~L~G~fNv~NaLaA~--a~~~~lG~~~e~i~~~l~~~~~v~G 323 (475)
T COG0769 249 CDFKRPDLDYRGIEESSSGSDFVFEPSGGIG---EYELPLPGLFNVYNALAAV--AAALALGVDLEDILAGLETLKPVPG 323 (475)
T ss_pred CCCchhhhhhccceeeeccceeEEEccCCce---eEeccccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 542211 1111111122121111122 3479999999999999999 8899999999999999999999999
Q ss_pred eeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc---CCcEEEEecCCCC---------------------------CCC
Q 017087 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAK---------------------------FGY 307 (377)
Q Consensus 258 R~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~r~i~v~G~~~~---------------------------~g~ 307 (377)
|||.+.. ++..++.|| +|||++++++|+.+. .+|+++|+|.-.+ +++
T Consensus 324 RmE~v~~--~~~~v~VDy-AHnPd~le~~L~~~~~~~~g~li~VfG~gGDrD~~kr~~mg~ia~~~ad~vivt~dnpR~e 400 (475)
T COG0769 324 RMELVNI--GGKLVIVDY-AHNPDGLEKALRAVRLHAAGRLIVVFGCGGDRDKSKRPDMGAIAEQLADIVIVTSDNPRSE 400 (475)
T ss_pred cceEecC--CCCeEEEEe-ccChHHHHHHHHHHHhhcCCcEEEEECccCCCCcccccchHHHHHhcCCcEEEcCCCCCCc
Confidence 9999963 477778886 999999999998875 4789999985422 556
Q ss_pred ChHHHHHHHHhCCCCC--cccccCCHHHHHHHHHHhcCCCCEEEEc-CCCcccccccC
Q 017087 308 SGVLIWKTLVNNGLSI--PCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 362 (377)
Q Consensus 308 ~~~~i~~~l~~~g~~~--~~~~~~~~~~ai~~a~~~~~~gdivli~-~g~~s~~~~~~ 362 (377)
+++.+.+.+.. |+.. ++..+.||++||++++..++++|+|++. +|+++++.+.+
T Consensus 401 dp~~i~~~i~~-g~~~~~~~~~~~dr~~AI~~ai~~a~~~D~vliagkGhe~yq~~~~ 457 (475)
T COG0769 401 DPAVILADILA-GIEAPEKYEIIEDREEAIRKALDLAKEGDVVLIAGKGHETYQIMLE 457 (475)
T ss_pred CHHHHHHHHHh-ccCCccceecchhHHHHHHHHHHhhccCCEEEEeeccchhhhhhhc
Confidence 77788777764 3322 2556789999999999999999998886 89999988877
No 36
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=3.4e-46 Score=363.25 Aligned_cols=302 Identities=20% Similarity=0.200 Sum_probs=222.3
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccc------------cchhhhhhhhc--------c-c---CC---
Q 017087 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC--------I-A---LP--- 93 (377)
Q Consensus 41 ~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~~--------~-~---~~--- 93 (377)
++.++|+||||||||||++||+++|+++|+++++.++. |.+++...+.. . + ++
T Consensus 16 ~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~f 95 (397)
T TIGR01499 16 DLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVRPILEKLSQQPTYF 95 (397)
T ss_pred hhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHHHHHHhccCCCCHH
Confidence 35789999999999999999999999999999887763 34443321100 0 0 22
Q ss_pred ----------CCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCC-CHHHHHHHHHHhcccCCCCceEEEe
Q 017087 94 ----------SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLP 162 (377)
Q Consensus 94 ----------~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~~v~n 162 (377)
+.+.++|++|+|+|.++.-.....++|+++|||||++||+++|| |+|+|+++|++|++ +++.+|+|
T Consensus 96 e~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~I~k---~~~~~v~~ 172 (397)
T TIGR01499 96 ELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVIEPLVSVITSIGLDHTEILGDTLEEIAWEKAGIIK---EGVPIVTG 172 (397)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeecCCCCcccccccCCCeEEEccccHHHHHHhCccHHHHHHHHhCccC---CCCCEEEc
Confidence 23568899999999987544445678999999999999999999 99999999999998 35679999
Q ss_pred CCChhhHHHHhc----cCcceeEeecCCCcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 017087 163 FGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (377)
Q Consensus 163 ~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~l 238 (377)
.|||....+..+ ...++.+++.+ +.+... ....+.+..... ....+.++++|.||++|+++|+ +++..+
T Consensus 173 ~d~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~--~~~~~~~~l~G~~~~~N~~~Ai--aa~~~l 245 (397)
T TIGR01499 173 PQEPEALNVLKKKAQEKGAPLFVVGRD--FNYSET-DENYLSFSGANL--FLEPLALSLLGDHQAENAALAL--AALEVL 245 (397)
T ss_pred CCChHHHHHHHHHHHHcCCCEEEeccc--eeeccc-ccceEEeecccc--cccccCCCCCCHHHHHHHHHHH--HHHHHH
Confidence 999887655422 22344555431 111100 011233321110 1112367899999999999999 778888
Q ss_pred CC-----CHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc----CCcEEEEecCCCC-----
Q 017087 239 GV-----DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK----- 304 (377)
Q Consensus 239 gi-----~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G~~~~----- 304 (377)
|. +.+.|+++|+++. +|||||++. .+++.+|.|+ +|||+|++++++.+. ++|+++|+|+..+
T Consensus 246 g~~~~~i~~~~i~~~L~~~~-~pGR~e~i~--~~~~~viiD~-AHNp~a~~~~l~~l~~~~~~~~i~~V~G~~~dkd~~~ 321 (397)
T TIGR01499 246 GKQRPKLSEEAIRKGLANTI-WPGRLEILS--EDNPNILLDG-AHNPHSAEALAEWFKKRFNGRPIILLFGALADKDAAA 321 (397)
T ss_pred HhccCCCCHHHHHHHHHhCC-CCceEEEEe--cCCCEEEEEC-CCCHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCCHHH
Confidence 75 5899999999997 999999995 3356677776 999999999998874 3478899986532
Q ss_pred ---------------------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccCh
Q 017087 305 ---------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363 (377)
Q Consensus 305 ---------------------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~ 363 (377)
+++++++|.+.+...+ +..++|+++|++.+. .++++|+|||+ |||+.+.+.
T Consensus 322 ~~~~l~~~~~~d~~~~~~~~~r~~~~~~i~~~~~~~~----~~~~~~~~~ai~~a~-~~~~~d~vlv~---GSlyl~~~~ 393 (397)
T TIGR01499 322 MLAPLKPVVDKEVFVTPFDYPRADDAADLAALAETFG----KETVEDWREALALAL-NASAEDDILVT---GSLYLVGEV 393 (397)
T ss_pred HHHHHhhccCcEEEEECCCCCCCCCHHHHHHHHHHcC----ceecCCHHHHHHHHH-hCCCCCEEEEE---ccHHHHHHH
Confidence 4456777777775421 345789999999998 78899999998 999988765
Q ss_pred H
Q 017087 364 E 364 (377)
Q Consensus 364 ~ 364 (377)
.
T Consensus 394 ~ 394 (397)
T TIGR01499 394 R 394 (397)
T ss_pred H
Confidence 4
No 37
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=1.6e-43 Score=371.07 Aligned_cols=307 Identities=19% Similarity=0.238 Sum_probs=223.9
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhhc--ccCC------CCCCCccEEEEEeCccccc
Q 017087 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC--IALP------SSKPKFQVAVVEVSSYQME 112 (377)
Q Consensus 41 ~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~--~~~~------~~~~~~~~~ViE~~~~~l~ 112 (377)
.+.|+|+||||||||||++||+++|+.+|+++++.++.|..+....+.. .+.+ ..+.++|++|+|++++++.
T Consensus 477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l~~~~vd~aVlE~~~ggil 556 (864)
T TIGR02068 477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDPTVDAAVLETARGGIL 556 (864)
T ss_pred CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHhhCCCCCEEEEEccCCchh
Confidence 3568999999999999999999999999999988777655443322110 0000 1355789999999999875
Q ss_pred cCCc-cccccEEEEecCCcchhcCC--CCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccCcceeEeecCCCcc
Q 017087 113 IPNK-YFCPTVSVVLNLTPDHLERH--KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK 189 (377)
Q Consensus 113 ~~~~-~~~p~i~ViTni~~dHl~~~--gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (377)
..+. ..+|+++|||||+.||++++ +|+|+|+++|+.+++.+++++.+|+|+|||.+..++..+.+++++|+.+.+..
T Consensus 557 ~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~ 636 (864)
T TIGR02068 557 REGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNP 636 (864)
T ss_pred hccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCCh
Confidence 4433 35799999999999999864 69999999999999988889999999999998888776666788887543211
Q ss_pred -----cccccc-----cceEEeccCCeeE---EEEeeccCCCC--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 017087 190 -----IDTEAK-----TASFEVPAVGVVS---QLQLHNMKVMG--RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254 (377)
Q Consensus 190 -----~~~~~~-----~~~~~~~~~~~~~---~~~~~~l~l~G--~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~ 254 (377)
+..... ...+.....+... ......++++| .||++|+++|+ ++++.+|++++.|+++|++|++
T Consensus 637 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAi--aaa~~lgi~~e~I~~gL~~F~~ 714 (864)
T TIGR02068 637 TVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAV--AAAWALGVPIELIRAGIRTFDA 714 (864)
T ss_pred HHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHHHHHHH--HHHHHcCCCHHHHHHHHHhccc
Confidence 010000 0001110111110 11122444455 89999999999 8899999999999999999987
Q ss_pred ----CCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc---CCcEEEEecCCCC-----------------------
Q 017087 255 ----PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAK----------------------- 304 (377)
Q Consensus 255 ----~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~r~i~v~G~~~~----------------------- 304 (377)
+|||||++. .+++.+|+|| +|||++++++++.++ .+|+++|+|++.+
T Consensus 715 ~~~~~pGR~e~~~--~~g~~vI~Dy-AHNP~a~~all~~l~~~~~~r~i~Vig~~gdr~~~~~~~lg~~l~~~~d~vil~ 791 (864)
T TIGR02068 715 DAAQAPGRFNLFN--LGGAHVLVDY-GHNPAAIEAVGAAIRNWPARRRIGVIGGPGDRRDEDLVEQGELLGGAFDQIILK 791 (864)
T ss_pred cccCCCCceEEEE--eCCcEEEEEc-CCCHHHHHHHHHHHHhcCCCCEEEEECCCCCCChhHHHHHHHHHHHhCCEEEEE
Confidence 999999984 4678899996 999999997776653 3578888887632
Q ss_pred ---------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcC
Q 017087 305 ---------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352 (377)
Q Consensus 305 ---------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~ 352 (377)
.|+.++.+.+.+.+.+....+..+.|+++|++.+.+.+++||+||+++
T Consensus 792 ~~~~~rg~~~ge~~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a~~gDlVLi~~ 848 (864)
T TIGR02068 792 EDDDVRGRPRGEAAALLRQGLRQSARKAAIEDILDETEAIAAALDDLRAGDLVVIFP 848 (864)
T ss_pred eCCCcCCCCCchHHHHHHHHHHhcCCCCcEEEEcCHHHHHHHHHHhCCCCCEEEEEe
Confidence 122344455555443222235668999999999999999999999974
No 38
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=3.2e-43 Score=343.72 Aligned_cols=307 Identities=19% Similarity=0.167 Sum_probs=214.1
Q ss_pred eeHHHHHHhhC---CCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccc------------cchhhhhhhhcc---
Q 017087 29 MSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHCI--- 90 (377)
Q Consensus 29 l~~~~~~~~~~---~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~~~--- 90 (377)
|.|+..+.+.+ .+..++||||||||||||++|++++|+++|+++++.++. |.+++...+...
T Consensus 32 l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~ 111 (416)
T PRK10846 32 LERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFAE 111 (416)
T ss_pred hHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHHH
Confidence 55555555444 235689999999999999999999999999999877742 333322211000
Q ss_pred ---------cC-----------CCCCCCccEEEEEeCccc-cccCCccccccEEEEecCCcchhcCCC-CHHHHHHHHHH
Q 017087 91 ---------AL-----------PSSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCH 148 (377)
Q Consensus 91 ---------~~-----------~~~~~~~~~~ViE~~~~~-l~~~~~~~~p~i~ViTni~~dHl~~~g-t~e~~~~~K~~ 148 (377)
.+ -+.+.++|++|+|+|.++ ++.++ .++|+++|||||++||+++|| |+|+|+++|++
T Consensus 112 ~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrld~tn-~i~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~ 190 (416)
T PRK10846 112 IEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATN-IVDADVAVVTSIALDHTDWLGPDRESIGREKAG 190 (416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCchhhh-ccCCCEEEECCccHHHHHHhcCCHHHHHHHHHh
Confidence 00 023567899999999655 55443 578999999999999999999 89999999999
Q ss_pred hcccCCCCceEEEeCCC-hh-hHHHHhccCcceeEeecCCCcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHH
Q 017087 149 LFSHMVNTKLGLLPFGN-QH-LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNA 226 (377)
Q Consensus 149 i~~~~~~~~~~v~n~dd-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na 226 (377)
+++. ++.+|+|.+| +. ....+.+..+++..++.. +.+..+. ..+.+..... .+ ..++++ .||++|+
T Consensus 191 Iik~---~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~~--~~~~l~-~~~~~N~ 258 (416)
T PRK10846 191 IFRA---EKPAVVGEPDMPSTIADVAQEKGALLQRRGVD--WNYSVTD--HDWAFSDGDG--TL--ENLPLP-NVPLPNA 258 (416)
T ss_pred hhcC---CCeEEECCccHhHHHHHHHHHhCCcEEEecce--eeeeccC--ceEEEecCcc--cc--ccCCcc-chHHHHH
Confidence 9984 6678898776 43 223444344444433211 1110000 1111111110 11 135666 4799999
Q ss_pred HHHHHHHHHHH--cCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcc---c-CCcEEEEec
Q 017087 227 AVAALSVLGLD--IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---K-GHKCVILLG 300 (377)
Q Consensus 227 laA~~~a~~~~--lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~-~~r~i~v~G 300 (377)
++|+ +++.. ++++.+.|+++|++++ +|||||++. .. ..+|+|+ ||||++++.+++.+ . ++|+++|+|
T Consensus 259 ~~Ai--a~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~-~~iI~D~-AHNp~a~~~l~~~L~~~~~~~~ii~Vfg 331 (416)
T PRK10846 259 ATAL--AALRASGLEVSEQAIRDGIASAI-LPGRFQIVS--ES-PRVILDV-AHNPHAAEYLTGRLKALPKNGRVLAVIG 331 (416)
T ss_pred HHHH--HHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEc--CC-CcEEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9998 56643 6799999999999998 999999995 23 3577787 99999999885443 3 357888887
Q ss_pred CCC-C------------------------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCc
Q 017087 301 GQA-K------------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCA 355 (377)
Q Consensus 301 ~~~-~------------------------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~ 355 (377)
... + +|.+++++.+.+.. ...++|+++|++.+.+.+++||+||++ |
T Consensus 332 ~~gdkd~~~~l~~L~~~~d~viv~~~~~~r~~~~~~l~~~~~~------~~~~~~~~~Ai~~a~~~a~~gD~VLi~---G 402 (416)
T PRK10846 332 MLHDKDIAGTLACLKSVVDDWYCAPLEGPRGATAEQLAEHLGN------GKSFDSVAQAWDAAMADAKPEDTVLVC---G 402 (416)
T ss_pred eeCCCCHHHHHHHHhhhCCEEEEECCCCCCCCCHHHHHHHhhh------CcccCCHHHHHHHHHHhcCCCCEEEEE---C
Confidence 542 1 45666777766642 234689999999999999999999996 9
Q ss_pred ccccccChH
Q 017087 356 SFDEFRNFE 364 (377)
Q Consensus 356 s~~~~~~~~ 364 (377)
||+.+.+..
T Consensus 403 S~~~~~~~~ 411 (416)
T PRK10846 403 SFHTVAHVM 411 (416)
T ss_pred cHHHHHHHH
Confidence 999887763
No 39
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=3.8e-41 Score=334.55 Aligned_cols=325 Identities=16% Similarity=0.194 Sum_probs=221.3
Q ss_pred eeHHHHHHhhC--C-CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc------------c--cchhhhhhhhc--
Q 017087 29 MSELDFAAQVI--P-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------L--GNPLSEAAFHC-- 89 (377)
Q Consensus 29 l~~~~~~~~~~--~-~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~------------~--g~~~~~~~~~~-- 89 (377)
|.|+..+.+.+ | ++.++|+||||||||||++||++||+++|++++++.+ . |.|+++..+..
T Consensus 58 L~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~ 137 (510)
T PLN02913 58 LGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLF 137 (510)
T ss_pred HHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHH
Confidence 45666555544 2 3568999999999999999999999999999987765 2 56655543310
Q ss_pred ---------c-------cCC-----------CCCCCccEEEEEeCccccccCCcccc---ccEEEEecCCcchhcCCC-C
Q 017087 90 ---------I-------ALP-----------SSKPKFQVAVVEVSSYQMEIPNKYFC---PTVSVVLNLTPDHLERHK-T 138 (377)
Q Consensus 90 ---------~-------~~~-----------~~~~~~~~~ViE~~~~~l~~~~~~~~---p~i~ViTni~~dHl~~~g-t 138 (377)
. .|. +.+.++|++|+|+|.|++.+..+.+. |+++|||||+.||++++| |
T Consensus 138 ~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~T 217 (510)
T PLN02913 138 HGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGS 217 (510)
T ss_pred HHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhccc
Confidence 0 000 23578999999999998544433444 599999999999999998 9
Q ss_pred HHHHHHHHHHhcccCCCCceEEEeC-CChhhHHHH----hccCcceeEeecCCCccccc---c-cccceEEecc-----C
Q 017087 139 MKNYALTKCHLFSHMVNTKLGLLPF-GNQHLNEAI----KGHRFNLAWIGAFPGVKIDT---E-AKTASFEVPA-----V 204 (377)
Q Consensus 139 ~e~~~~~K~~i~~~~~~~~~~v~n~-dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~-----~ 204 (377)
+|+|+.+|++|++ ++..+|++. ..+....+. ++..+++..++. .++.+.. . .....+.+.. .
T Consensus 218 le~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (510)
T PLN02913 218 LESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASD-PGVRSSIKGIITDNGKPCQSCDIVIRVE 293 (510)
T ss_pred HHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEecc-ccccceeecccccCCceeEEeccccccc
Confidence 9999999999998 467788875 334443332 333445555532 1111100 0 0111122110 0
Q ss_pred C---eeEEEEeeccCCCChhHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhhcCCCCCCeeeEEeec------cCCeE
Q 017087 205 G---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-----GVDVEALNSTIEILRTPPHRMQIVHRD------IQGVT 270 (377)
Q Consensus 205 ~---~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~l-----gi~~~~i~~~l~~~~~~~gR~e~~~~~------~~~~~ 270 (377)
+ .......+.++++|.||++|+++|+ +++..+ +++.+.|+++|++++ ||||||++... ..+..
T Consensus 294 ~~~~~~~~~~~~~l~L~G~hq~~Naa~Al--aa~~~L~~~~~~i~~~~I~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~ 370 (510)
T PLN02913 294 KDDPLFIELSDVNLRMLGSHQLQNAVTAA--CAALCLRDQGWRISDASIRAGLENTN-LLGRSQFLTSKEAEVLGLPGAT 370 (510)
T ss_pred cccccccccccccCCCCCHHHHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHhCC-CCCceEEeeccccccccCCCCE
Confidence 0 0001112468899999999999999 677776 699999999999998 89999998410 12457
Q ss_pred EEEcCCCCCHHHHHHHHhccc----CCcEEEEecCCCC-------------------------------CCCChHHHHHH
Q 017087 271 WVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK-------------------------------FGYSGVLIWKT 315 (377)
Q Consensus 271 iidD~~a~np~s~~~al~~~~----~~r~i~v~G~~~~-------------------------------~g~~~~~i~~~ 315 (377)
||+|+ +|||+|++++++.+. .+|+++|+|.+.+ ++.+++++.+.
T Consensus 371 vIlDg-AHNp~s~~al~~~L~~~~~~~ki~~V~gml~DKd~~~~l~~l~~~~~~d~v~~~~~~~~~~~~r~~~~~~l~~~ 449 (510)
T PLN02913 371 VLLDG-AHTKESAKALVDTIKTAFPEARLALVVAMASDKDHLAFASEFLSGLKPEAVFLTEADIAGGKSRSTSASALKEA 449 (510)
T ss_pred EEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEEEccCCCCHHHHHHHHhcccCCCEEEEEcCCCCCCCCCCCCHHHHHHH
Confidence 88897 799999999988763 3577888876532 12345666666
Q ss_pred HHhCCCCCcc--------cccCCHHHHHHHHHHhc--CCCCEEEEcCCCcccccccChH
Q 017087 316 LVNNGLSIPC--------FAVANMKDAVNHARRMA--TNGDAIVLSPGCASFDEFRNFE 364 (377)
Q Consensus 316 l~~~g~~~~~--------~~~~~~~~ai~~a~~~~--~~gdivli~~g~~s~~~~~~~~ 364 (377)
+++......+ ..+++..+|++.+.+.+ .++|.|+|+ ||||.+.+..
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~v~---GSlylv~~v~ 505 (510)
T PLN02913 450 WIKAAPELGIETLLAENNSLLKSLVDASAILRKARTLDPSSVVCVT---GSLHIVSAVL 505 (510)
T ss_pred HHHhccccCceeeccccccccCCHHHHHHHHHHhcccCCCCEEEEe---CcHHHHHHHH
Confidence 6432110012 23788999999998776 477899998 9999887653
No 40
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-40 Score=318.20 Aligned_cols=313 Identities=19% Similarity=0.209 Sum_probs=225.6
Q ss_pred eeHHHHHHhhC---CCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc------------ccchhhhhhhhc----
Q 017087 29 MSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC---- 89 (377)
Q Consensus 29 l~~~~~~~~~~---~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~---- 89 (377)
+.|+..+.+.+ ++..++|+|+|||||+|||+|+.+||+++|++++.+.+ .|.|+++..+..
T Consensus 27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ 106 (427)
T COG0285 27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER 106 (427)
T ss_pred hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 77777776655 25678999999999999999999999999999977665 355555544321
Q ss_pred ---cc-----C-C-------------CCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCC-CHHHHHHHH
Q 017087 90 ---IA-----L-P-------------SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTK 146 (377)
Q Consensus 90 ---~~-----~-~-------------~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~g-t~e~~~~~K 146 (377)
.. . + +.+.++|++|+|||.||+-+.++.+.|+++|||||+.||.+++| |+|+|+.+|
T Consensus 107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNVi~p~vsvIT~I~lDH~~~LG~tie~IA~EK 186 (427)
T COG0285 107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNVIEPDVSVITSIGLDHTAFLGDTLESIAREK 186 (427)
T ss_pred HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhccCCceEEEcccChhHHHHhCCcHHHHHHHh
Confidence 00 0 0 23567999999999998655555688999999999999999999 999999999
Q ss_pred HHhcccCCCCceEEEeC-CChhhHHHHh----ccCcceeEeecCCCcccccccccceEEeccCCeeEEEEeeccCCCChh
Q 017087 147 CHLFSHMVNTKLGLLPF-GNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221 (377)
Q Consensus 147 ~~i~~~~~~~~~~v~n~-dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h 221 (377)
++|++. +..+|+.. +.|....... ...+++..++.+ +..... ...+.+...+ ......+|+.|.|
T Consensus 187 AGI~k~---g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~---~~~~~~lp~l~~~ 256 (427)
T COG0285 187 AGIIKA---GKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPD--FQVLEE--GNGFSFQGGG---GLLDLPLPLLGGH 256 (427)
T ss_pred hhhccC---CCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccc--hhhccc--cceEEEecCC---eeeeeccccccch
Confidence 999984 55677765 4565554432 223333333221 111111 1233333211 1223478988887
Q ss_pred -HHHHHHHHHHHHHHHHcC--CCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc----CCc
Q 017087 222 -NYHNAAVAALSVLGLDIG--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHK 294 (377)
Q Consensus 222 -n~~NalaA~~~a~~~~lg--i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~r 294 (377)
|+.||++|+ +++..++ ++.+.|+++|++.. ||||||++. .+ +.++.|. +|||.|+.++.+.++ .++
T Consensus 257 ~Q~~NAa~Ai--~al~~l~~~i~~~~i~~gl~~~~-wpGR~e~l~--~~-p~i~lDg-AHNp~aa~~La~~l~~~~~~~~ 329 (427)
T COG0285 257 HQIENAALAI--AALEALGKEISEEAIRKGLANVD-WPGRLERLS--EN-PLILLDG-AHNPHAARALAETLKTLFNDRP 329 (427)
T ss_pred hHHHHHHHHH--HHHHHhcccCCHHHHHHHHHhCc-CCceEEEec--CC-CeEEEEC-CCCHHHHHHHHHHHHHHhccCC
Confidence 999999999 7888887 58999999999998 999999995 34 4455565 999999988877663 233
Q ss_pred -EEEEecCCCC-------------------------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEE
Q 017087 295 -CVILLGGQAK-------------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348 (377)
Q Consensus 295 -~i~v~G~~~~-------------------------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdiv 348 (377)
+++|+|...+ .+.+++++.+.+...+ . .. ..+.++|++.+.+...++|.|
T Consensus 330 ~~~~v~g~l~dKd~~~~l~~L~~~~~~~~~~~~~~~ra~~~~~l~~~~~~~~-~--~~-~~~~~~a~~~~~~~~~~~~~i 405 (427)
T COG0285 330 RLTLVFGMLKDKDIAGMLAALLPIVDEIYTTPLPWPRALDAEELLAFAGERG-G--VE-LDDVAEALELALEKADEDDLV 405 (427)
T ss_pred ceEEEEEeecCCCHHHHHHHhhccCcEEEEccCCCcccCCHHHHHHHHHhhc-C--Cc-cccHHHHHHHHHHhcCCCCeE
Confidence 7889986532 3446677777666432 1 11 588999999999887777999
Q ss_pred EEcCCCcccccccChHH
Q 017087 349 VLSPGCASFDEFRNFEH 365 (377)
Q Consensus 349 li~~g~~s~~~~~~~~~ 365 (377)
||+ |||+.+.++.+
T Consensus 406 lV~---GSly~~~ev~~ 419 (427)
T COG0285 406 LVT---GSLYLAGEVLE 419 (427)
T ss_pred EEE---ecHHHHHHHHH
Confidence 998 99998877554
No 41
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=5.4e-35 Score=286.36 Aligned_cols=235 Identities=22% Similarity=0.234 Sum_probs=165.8
Q ss_pred eeHHHHHHhhC---C--CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc------------ccchhhhhhh----
Q 017087 29 MSELDFAAQVI---P--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAF---- 87 (377)
Q Consensus 29 l~~~~~~~~~~---~--~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~---- 87 (377)
+.++..+.+.+ + +++++|+||||||||||++|+.+||+++|++++++++ .|.|++...+
T Consensus 42 L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f 121 (530)
T PLN02881 42 FDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYF 121 (530)
T ss_pred hHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHH
Confidence 44554444433 1 3668999999999999999999999999999988776 2455554221
Q ss_pred -------hccc-----CC-------------CCCCCccEEEEEeCccc-cccCCccccccEEEEecCCcchhcCCC-CHH
Q 017087 88 -------HCIA-----LP-------------SSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHK-TMK 140 (377)
Q Consensus 88 -------~~~~-----~~-------------~~~~~~~~~ViE~~~~~-l~~~~~~~~p~i~ViTni~~dHl~~~g-t~e 140 (377)
.... .+ +.+.++|++|+|+|.++ ++.++...+|+++|||||+.||+++|| |+|
T Consensus 122 ~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle 201 (530)
T PLN02881 122 WWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLG 201 (530)
T ss_pred HHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCHH
Confidence 1000 01 12567899999999866 455543348999999999999999999 999
Q ss_pred HHHHHHHHhcccCCCCceEEEeCCChhhHHHHh----ccCcceeEeecCCCcccccccccceEEeccCCeeEEEEeeccC
Q 017087 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMK 216 (377)
Q Consensus 141 ~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (377)
+|+.+|++||+ ++..+|...+++.+..+++ +..+++..++.. + .+. +....++
T Consensus 202 ~IA~~KagI~k---~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~~-------~----~~~---------~~~~~l~ 258 (530)
T PLN02881 202 KIAGEKAGIFK---PGVPAFTVPQPDEAMRVLEERASELGVPLQVVEPL-------D----SYG---------LSGLKLG 258 (530)
T ss_pred HHHHHHHHHHh---cCCCEEEeCCChHHHHHHHHHHHHhCCcEEEeccc-------c----cce---------ecccCCC
Confidence 99999999998 3556777656666655542 223333322210 0 000 1113688
Q ss_pred CCChhHHHHHHHHHHHHHHHHc---------------CCCHHHHHHHhhcCCCCCCeeeEEee------ccCCeEEEEcC
Q 017087 217 VMGRHNYHNAAVAALSVLGLDI---------------GVDVEALNSTIEILRTPPHRMQIVHR------DIQGVTWVDDS 275 (377)
Q Consensus 217 l~G~hn~~NalaA~~~a~~~~l---------------gi~~~~i~~~l~~~~~~~gR~e~~~~------~~~~~~iidD~ 275 (377)
+.|.||..|+.+|+ +++..+ ...++.++++|+++. ||||||++.. ..+++.+|.|.
T Consensus 259 L~G~~Q~~NaalAl--a~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~-wpGR~e~v~~~~~~~~~~~~~~~~LDG 335 (530)
T PLN02881 259 LAGEHQYLNAGLAV--ALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTAS-LQGRAQVVPDSYINSEDSGDLVFYLDG 335 (530)
T ss_pred CCChhHHHhHHHHH--HHHHHHHhhccccccccccccCCCHHHHHHHHHhCC-CCceEEEeccccccccCCCCCeEEEEC
Confidence 99999999999999 555443 234568999999998 9999999941 01345778786
Q ss_pred CCCCHHHHHHHHhcc
Q 017087 276 KATNLEATCTGLMDL 290 (377)
Q Consensus 276 ~a~np~s~~~al~~~ 290 (377)
||||+|++.+.+.+
T Consensus 336 -AHNp~s~~~l~~wf 349 (530)
T PLN02881 336 -AHSPESMEACARWF 349 (530)
T ss_pred -CCCHHHHHHHHHHH
Confidence 99999999877655
No 42
>PRK14016 cyanophycin synthetase; Provisional
Probab=100.00 E-value=8.2e-34 Score=292.75 Aligned_cols=218 Identities=20% Similarity=0.243 Sum_probs=161.5
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhhc--ccCC------CCCCCccEEEEEeCcccccc
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC--IALP------SSKPKFQVAVVEVSSYQMEI 113 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~--~~~~------~~~~~~~~~ViE~~~~~l~~ 113 (377)
+.|+|+||||||||||++||+++|+.+|+++++.++.|.++....+.. .+.+ ....++|++|+|+|++++..
T Consensus 479 ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~ 558 (727)
T PRK14016 479 RIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIDKGDCTGPKSARRVLMNPDVEAAVLETARGGILR 558 (727)
T ss_pred ceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEEeccccccCHHHHHHHhcCCCCCEEEEEcCCCchhh
Confidence 568999999999999999999999999999988888776543321100 0000 12346799999999998754
Q ss_pred CCc-cccccEEEEecCCcchhcCCC--CHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccCcceeEeecCCCccc
Q 017087 114 PNK-YFCPTVSVVLNLTPDHLERHK--TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI 190 (377)
Q Consensus 114 ~~~-~~~p~i~ViTni~~dHl~~~g--t~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (377)
... ..+|+++|||||++||+++|+ |+|+|+++|+.+++.++++|.+|+|.|||.+..+...+.+++++|+.+.+..+
T Consensus 559 ~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~ 638 (727)
T PRK14016 559 EGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKPDGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPV 638 (727)
T ss_pred cCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCCCCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChH
Confidence 333 458999999999999999875 99999999999999888899999999999998887766667888875432111
Q ss_pred -----ccccc-----cceEEeccCCeeEE---EEeeccCCCC--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC-
Q 017087 191 -----DTEAK-----TASFEVPAVGVVSQ---LQLHNMKVMG--RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT- 254 (377)
Q Consensus 191 -----~~~~~-----~~~~~~~~~~~~~~---~~~~~l~l~G--~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~- 254 (377)
..... ...+.+...+.... +..+.+.++| .||++|+++|+ |+|+.+|++++.|+++|++|++
T Consensus 639 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~i~l~~~G~~~hnv~NalAAi--Aaa~~lGi~~~~I~~~L~sF~~~ 716 (727)
T PRK14016 639 IAEHRAQGGRAVYVEGDYIVLAEGGWEIRIISLADIPLTLGGKAGFNIENALAAI--AAAWALGIDIELIRAGLRTFVSD 716 (727)
T ss_pred HHHHHHhCCceEEEeCCEEEEEeCCcceeeccccccceecCCcchhhHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCC
Confidence 00100 00111111111111 1112333376 79999999999 8999999999999999999986
Q ss_pred ---CCCeeeE
Q 017087 255 ---PPHRMQI 261 (377)
Q Consensus 255 ---~~gR~e~ 261 (377)
.||||+.
T Consensus 717 ~~~~pGR~n~ 726 (727)
T PRK14016 717 AAQAPGRFNL 726 (727)
T ss_pred ccCCCccccc
Confidence 9999986
No 43
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=100.00 E-value=1.2e-32 Score=241.11 Aligned_cols=176 Identities=25% Similarity=0.350 Sum_probs=130.6
Q ss_pred EeCCCChHhHHHHHHHHHHhCCCCeeeecc----ccchhhhhhhhcccCCCCCCCccEEEEEeCcccccc--CCcccccc
Q 017087 48 VTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI--PNKYFCPT 121 (377)
Q Consensus 48 VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~--~~~~~~p~ 121 (377)
||||||||||++||+++|+++|..+++.|+ +|.+....... ..+.+++|+|+|++++.. ....++|+
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~V~E~~~~~~~~~~l~~~~~p~ 73 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTNNQIGLPLLLLNAR-------EGGADIAVLEVSEGGLGDERLSFLLKPD 73 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSCHHHHHHHHHHHHHH-------HTTSSEEEEEESSSCCCTSTTSGGSBES
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHhhhc-------ccccceeeeeccCCccccceeeeeeehh
Confidence 899999999999999999999999988887 44443333221 246889999999986543 22237899
Q ss_pred EEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccCcceeEeecCCCcccc-----ccccc
Q 017087 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TEAKT 196 (377)
Q Consensus 122 i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 196 (377)
++|||||++||+++|+|+|+|+++|+++++.+++++.+|+|.|||.+.........++++|+.....++. .....
T Consensus 74 i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~ 153 (188)
T PF08245_consen 74 IAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASNISYSEEG 153 (188)
T ss_dssp EEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEEEETTE
T ss_pred eeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeeeEEEecCC
Confidence 9999999999999999999999999999999988999999999998877777666778899876443221 11111
Q ss_pred ceEEec-cCCeeEEEEeeccCCCChhHHHHHHHHHHHHHH
Q 017087 197 ASFEVP-AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (377)
Q Consensus 197 ~~~~~~-~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~ 235 (377)
..+.+. ..+.... +.+|++|.||++|+++|+ ++|
T Consensus 154 ~~~~i~~~~~~~~~---~~~~l~G~hn~~NalaA~--a~a 188 (188)
T PF08245_consen 154 GRFRIISYNGEEFE---IELPLPGKHNVENALAAI--AAA 188 (188)
T ss_dssp EEEEEEEETTEEEE---EEESSSSHHHHHHHHHHH--HHH
T ss_pred cEEEEEEecCceEE---EEecCCCHHHHHHHHHHH--HhC
Confidence 222111 1222233 479999999999999999 554
No 44
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.96 E-value=1.2e-27 Score=225.90 Aligned_cols=224 Identities=25% Similarity=0.269 Sum_probs=158.1
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc------------ccchhhhhhhhcc----------------cC
Q 017087 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHCI----------------AL 92 (377)
Q Consensus 41 ~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~~----------------~~ 92 (377)
.++++|||||||||+|||+++.+||+++|+++|.+.+ .|.|++...+... .+
T Consensus 70 ~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~ 149 (496)
T KOG2525|consen 70 NSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSM 149 (496)
T ss_pred hheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCC
Confidence 4678999999999999999999999999999866554 3555554432210 01
Q ss_pred C-------------CCCCCccEEEEEeCccc-cccCCccccccEEEEecCCcchhcCCC-CHHHHHHHHHHhcccCCCCc
Q 017087 93 P-------------SSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK 157 (377)
Q Consensus 93 ~-------------~~~~~~~~~ViE~~~~~-l~~~~~~~~p~i~ViTni~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~ 157 (377)
+ +.+.++|++|+|+|.|| ++.++.+-+|-++.||+|+.||++++| |+++|+.+|++||+. +.
T Consensus 150 p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~---gv 226 (496)
T KOG2525|consen 150 PTYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKE---GV 226 (496)
T ss_pred CchhhhhHhhhheeeeecCCcEEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhcccccc---CC
Confidence 1 23678999999999987 566665567999999999999999999 999999999999984 44
Q ss_pred eEEEeCCChhhHHHHhcc-CcceeEeecCCCcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHH
Q 017087 158 LGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236 (377)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~ 236 (377)
.++....++.+..+++.. ...... ...........+....+.+.|.||..|+.+|+ .++.
T Consensus 227 paft~~q~~e~~nvL~~ra~e~~~~-----------------L~~v~p~~~~~ls~~~lgl~g~hq~~na~lA~--~L~~ 287 (496)
T KOG2525|consen 227 PAFTVPQPPEALNVLKERASELGVP-----------------LFVVPPLEAYELSGVNLGLIGTHQWSNASLAV--QLAS 287 (496)
T ss_pred ceEEcCCcHHHHHHHHHHHHhcCCC-----------------ceecCCchhhhhcCCcccccccchhhhhHHHH--HHHH
Confidence 455544666666655432 111000 00000000001111246788999999999998 4443
Q ss_pred Hc-----------------C--CCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcc
Q 017087 237 DI-----------------G--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290 (377)
Q Consensus 237 ~l-----------------g--i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~ 290 (377)
.. + +|+ ....+|.++. ||||.|++.. .++.+++.|. |||++||++..+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~GL~~~~-wPGR~qil~~-~~~~~~llDG-AHt~eSaea~~~w~ 356 (496)
T KOG2525|consen 288 EWLIQNGRVAEGVLDALQTSGLIPP-AFLSGLASTD-WPGRLQILEY-GRGVTWLLDG-AHTKESAEACAKWF 356 (496)
T ss_pred HHHHhcCcccccCCCccccccCCCH-HHhcchhhcc-CCCceEEEec-CCCcEEEecC-CCCHHHHHHHHHHH
Confidence 21 1 444 4556999998 9999999963 4778888897 99999999987655
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=98.94 E-value=1.1e-09 Score=83.83 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=46.4
Q ss_pred CCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcc----cCCcEEEEecCCCCCCCChHHHHHHH
Q 017087 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKFGYSGVLIWKTL 316 (377)
Q Consensus 255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~r~i~v~G~~~~~g~~~~~i~~~l 316 (377)
||||||++. ..+++.+|+| |||||+|++++++.+ +.+|+++|+|.+.++|....+.+..+
T Consensus 1 vpgR~e~v~-~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~ 64 (91)
T PF02875_consen 1 VPGRMEVVR-EPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEI 64 (91)
T ss_dssp ETTSSEEEE-EETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHH
T ss_pred CCCCcEEEe-eCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHH
Confidence 699999997 3578999999 599999999998877 35789999999888887765544433
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.62 E-value=0.017 Score=53.05 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=76.9
Q ss_pred HHHHhhCC--CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeeccc-------cchhhhh-hhhccc---------
Q 017087 33 DFAAQVIP--RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNL-------GNPLSEA-AFHCIA--------- 91 (377)
Q Consensus 33 ~~~~~~~~--~~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g~~-------g~~~~~~-~~~~~~--------- 91 (377)
+++..+++ -+..+|||||+ .||||...-|..-|...|.++++...- |..+.+. ++....
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs 118 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRS 118 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEee
Confidence 44555443 35569999997 579999999999999999998653321 1111111 111100
Q ss_pred --CC----------------CCCCCccEEEEEeC-ccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhccc
Q 017087 92 --LP----------------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH 152 (377)
Q Consensus 92 --~~----------------~~~~~~~~~ViE~~-~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~ 152 (377)
+. ....++|+.++|+. .|+-+.. ..--.|+.+++-+. .+| +++...|.++++-
T Consensus 119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~-I~~~aDt~~~v~~p-----g~G--D~~Q~iK~GimEi 190 (323)
T COG1703 119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD-IANMADTFLVVMIP-----GAG--DDLQGIKAGIMEI 190 (323)
T ss_pred cCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH-HhhhcceEEEEecC-----CCC--cHHHHHHhhhhhh
Confidence 00 01346899999986 4554422 11224777776652 233 4566778888874
Q ss_pred CCCCceEEEeCCChhhH
Q 017087 153 MVNTKLGLLPFGNQHLN 169 (377)
Q Consensus 153 ~~~~~~~v~n~dd~~~~ 169 (377)
....|+|..|..-.
T Consensus 191 ---aDi~vINKaD~~~A 204 (323)
T COG1703 191 ---ADIIVINKADRKGA 204 (323)
T ss_pred ---hheeeEeccChhhH
Confidence 67899999986543
No 47
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.13 E-value=0.82 Score=43.43 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=30.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
.+..+|+|||+. ||||++..+...|+..|.++++.+.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~ 92 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAV 92 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 355699999964 8999999999999999998865443
No 48
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.82 E-value=0.74 Score=34.22 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=24.6
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhCCCCeeee
Q 017087 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
|.++|. .||||++..++..|++.|+++...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~ 33 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 566655 699999999999999999887443
No 49
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.00 E-value=0.15 Score=44.43 Aligned_cols=27 Identities=37% Similarity=0.664 Sum_probs=24.6
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCC
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~ 71 (377)
+|+|+| ..||||++..|...|.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 689999 789999999999999988876
No 50
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=91.74 E-value=0.22 Score=44.67 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=29.5
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 45 ~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
+|+|+|.-||||+..-|+.-|+..|+++.+..+
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTT 33 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTT 33 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence 589999999999999999999999999865444
No 51
>PRK15453 phosphoribulokinase; Provisional
Probab=91.60 E-value=0.33 Score=44.81 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.3
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCC
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL~~~g 69 (377)
++.++|+|||+ .||||++..++++|...+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~ 33 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN 33 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 56789999996 579999999999987544
No 52
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=90.57 E-value=0.59 Score=43.06 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.5
Q ss_pred CCCcEEEEe---CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+..++|+|| |-.||||++..++..|...|.++.+
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vll 137 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLL 137 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 467899999 5779999999999999999988754
No 53
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=90.21 E-value=0.43 Score=46.75 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=29.8
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+.++|+|+ |-.|||||+.-|++.|...|+++.+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 45799999 78899999999999999999998653
No 54
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=89.82 E-value=0.49 Score=46.03 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=29.7
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+.++|+|+ |-.|||||+.-|++.|...|+++.+.
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI 141 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI 141 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 35799999 88899999999999999999998543
No 55
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=89.82 E-value=0.49 Score=44.81 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=30.3
Q ss_pred CCcEEEE----eCCCChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~V----TGTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+.++|.| .|-.|||+++..|...|++.|+++++.
T Consensus 48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il 85 (325)
T PRK00652 48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV 85 (325)
T ss_pred CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 5679999 899999999999999999999998653
No 56
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=89.37 E-value=0.58 Score=41.32 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=24.9
Q ss_pred EEEEe--CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 45 ~I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+|+|+ |-.|||||+.-|++.|.+.|+++.+
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLl 33 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQ 33 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEE
Confidence 45555 4779999999999999999998754
No 57
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=89.30 E-value=0.55 Score=45.73 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=30.0
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
..++|+|+ |-.|||||+.-|++.|...|+++.+.
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 45799999 88999999999999999999998544
No 58
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=89.19 E-value=0.57 Score=39.51 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=31.0
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeecccc
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNLG 79 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g~~g 79 (377)
+++++|+|. .||||..+=|-..|++.|+++++.-.-+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 579999995 5999999999999999999986544433
No 59
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=88.83 E-value=0.52 Score=41.62 Aligned_cols=37 Identities=32% Similarity=0.493 Sum_probs=29.6
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCCeeee-ccccc
Q 017087 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG-GNLGN 80 (377)
Q Consensus 44 ~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~-g~~g~ 80 (377)
++|.|| |-.|||||++-|...|...|+++.+. .-+|.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGL 43 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGL 43 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCc
Confidence 577787 67899999999999999999997543 33444
No 60
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=88.81 E-value=0.66 Score=41.33 Aligned_cols=32 Identities=34% Similarity=0.433 Sum_probs=28.2
Q ss_pred CcEEEEeCCC---ChHhHHHHHHHHHHhCCCCeee
Q 017087 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 43 ~~~I~VTGTn---GKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++.+-||||. |||.+++.|.+.|+++|+++..
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~ 36 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAG 36 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEE
Confidence 4678999985 9999999999999999998753
No 61
>PRK07667 uridine kinase; Provisional
Probab=88.65 E-value=1.1 Score=38.97 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=26.8
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
...+|||+| -.||||++..|.+.|.+.|.++
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~ 48 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPF 48 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 347999999 6799999999999999887765
No 62
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=88.59 E-value=0.65 Score=42.53 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.3
Q ss_pred eCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
-|-.|||||+.-|++.|...|+++.+
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVll 34 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMI 34 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEE
Confidence 56889999999999999999998854
No 63
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=88.55 E-value=1.7 Score=34.31 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=36.2
Q ss_pred CCCChHHHHHHHHhCCCCC-cccccCCHHHHHHHHHHhcCCCCEEEEc
Q 017087 305 FGYSGVLIWKTLVNNGLSI-PCFAVANMKDAVNHARRMATNGDAIVLS 351 (377)
Q Consensus 305 ~g~~~~~i~~~l~~~g~~~-~~~~~~~~~~ai~~a~~~~~~gdivli~ 351 (377)
.|..+++++-+|+-.|++. ++...+|.++|++.+.....+++.+.+.
T Consensus 60 ~G~Ra~DmalRLkyAGv~~~~i~v~~d~~~a~~~~~~~~~~~~~~yil 107 (113)
T PF08353_consen 60 SGTRAEDMALRLKYAGVDEEKIIVEEDLEEALDAFLIKSDPTDKVYIL 107 (113)
T ss_pred EeeeHHHHHhHeeecCcchHHeEecCCHHHHHHHHHHhcCCCCcEEEE
Confidence 4677899999998888863 4667899999999976666666666554
No 64
>PRK06696 uridine kinase; Validated
Probab=88.40 E-value=1.2 Score=39.77 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=28.6
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
....+|+|+| -.||||.+..|...|.+.|..+..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4567999999 679999999999999988866544
No 65
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=88.33 E-value=1.1 Score=39.25 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeee
Q 017087 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
.+.++|+||++ .||||++..|+..|...|.++.+
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVll 51 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLL 51 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 35788999864 47999999999999999988754
No 66
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=88.33 E-value=0.72 Score=42.48 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=27.0
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCeeee
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
++|+|+| =.|||||+.-|+..|.+.|+++.+.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 5677774 6799999999999999999998653
No 67
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=87.92 E-value=0.81 Score=41.03 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=29.1
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+++|+|+| -.||||++.-|...|+..|+++++.-
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 36899999 78999999999999999999986553
No 68
>PRK05439 pantothenate kinase; Provisional
Probab=87.57 E-value=1.1 Score=42.13 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=26.2
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhC--CCCeeeec
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL--GIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~--g~~~~~~g 76 (377)
...+|||||+ .||||++..|..+|... +.++.+.+
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 4459999995 57999999999999764 34444333
No 69
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=87.48 E-value=0.86 Score=44.36 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=28.6
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+.++|+|+ |-.|||||+.-|++.|...|+++.+.
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34688887 56789999999999999999998543
No 70
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=87.42 E-value=0.55 Score=39.85 Aligned_cols=25 Identities=40% Similarity=0.727 Sum_probs=20.0
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHhCCCCee
Q 017087 45 ILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 45 ~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~ 73 (377)
.|+||||- ||||+|..|+ ..|+++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH----HhCCcee
Confidence 68999985 7999999888 3477764
No 71
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=87.36 E-value=1.1 Score=40.87 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=31.4
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCC--eeeeccccc
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIE--AFVGGNLGN 80 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~--~~~~g~~g~ 80 (377)
+...+|||+|| .||+||+..+..+|+..+.. +.+....|-
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGF 123 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF 123 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecccc
Confidence 45569999997 58999999999999999876 444444443
No 72
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=87.17 E-value=6.7 Score=32.50 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=60.6
Q ss_pred EEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc-c------cchhhhh-hhhcc---------cCC-------------
Q 017087 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN-L------GNPLSEA-AFHCI---------ALP------------- 93 (377)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~-~------g~~~~~~-~~~~~---------~~~------------- 93 (377)
|++.| -.||||++..+...|...|.++.+... . +..+... .++.. ..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHH
Confidence 55665 458999999999999999988754221 1 1111100 00000 000
Q ss_pred -----CCCCCccEEEEEeCccccccCCccc-cc-cEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCC
Q 017087 94 -----SSKPKFQVAVVEVSSYQMEIPNKYF-CP-TVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (377)
Q Consensus 94 -----~~~~~~~~~ViE~~~~~l~~~~~~~-~p-~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~d 164 (377)
....++|+.++++ .|-.......+ .. .+.|+|+-+ -.+.|.--|..+|+. ...+++|.-
T Consensus 82 ~~~~~~~~~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe--------~~D~y~~~k~~~~~~---~~~~~~~k~ 147 (148)
T cd03114 82 EVIRVLDAAGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPG--------AGDDIQAIKAGIMEI---ADIVVVNKA 147 (148)
T ss_pred HHHHHHHhcCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCC--------chhHHHHhhhhHhhh---cCEEEEeCC
Confidence 0123678899998 33211111112 22 366777754 357888889888874 668888853
No 73
>PHA02518 ParA-like protein; Provisional
Probab=87.14 E-value=0.97 Score=39.54 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=24.7
Q ss_pred EEEEe---CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 45 ~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+|+|+ |-.||||++..|++.|...|+++.+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vll 34 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLL 34 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 45554 6678999999999999999988754
No 74
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=87.13 E-value=1.1 Score=39.47 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=27.7
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHh-CCCCeee
Q 017087 42 SIKILAVT---GTNGKSTVVTFVGQMLNH-LGIEAFV 74 (377)
Q Consensus 42 ~~~~I~VT---GTnGKTTT~~~l~~iL~~-~g~~~~~ 74 (377)
..++|+|+ |-.||||++..|++.|.. .|+++.+
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLl 70 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLL 70 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 56799999 577999999999999986 6888743
No 75
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=87.11 E-value=0.89 Score=39.09 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=24.2
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
+|+|+| ..||||.+..|...|...|.++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~ 31 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPV 31 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 478888 46999999999999998776653
No 76
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.99 E-value=0.98 Score=42.44 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=29.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+..+|.+.|.| |||||..=|++.|++.|+++.+..
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA 174 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAA 174 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEe
Confidence 45688888877 699999999999999999986544
No 77
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=86.80 E-value=0.97 Score=41.77 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=26.5
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCeeee
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
++|+|+| =.|||||+.-|++.|...|+++.+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 4666664 7799999999999999999988543
No 78
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=86.54 E-value=1.1 Score=40.39 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=26.4
Q ss_pred cEEEEeC---CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+|++ -.||||++.-|+..|...|+++.+
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vll 35 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLA 35 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 5677765 679999999999999999998864
No 79
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=86.39 E-value=1.1 Score=41.31 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=28.7
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
+++|+|+| -.||||.+.-|...|++.| ++++.-.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 46899999 8899999999999999999 7754433
No 80
>PRK10037 cell division protein; Provisional
Probab=86.36 E-value=1.1 Score=40.62 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=25.9
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+|. |=.|||||+.-|+..|.+.|+++.+
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLl 35 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLV 35 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEE
Confidence 466666 5678999999999999999998854
No 81
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=86.21 E-value=1.2 Score=36.74 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=24.7
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
|+|+|.| -.||||.++.|-.-|...|++++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ 33 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAV 33 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEE
Confidence 5788888 469999999999999999999864
No 82
>COG2403 Predicted GTPase [General function prediction only]
Probab=86.15 E-value=0.84 Score=43.33 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=28.7
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhCCCCee
Q 017087 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
..|+|+|||| .|||+++.++.++|++.|+++.
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~ 159 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC 159 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceE
Confidence 4689999997 6999999999999999999863
No 83
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=85.87 E-value=1.2 Score=40.98 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=25.9
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+|+ |-.|||||+.-|++.|.+.|+++.+
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLl 34 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMV 34 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEE
Confidence 466666 4667999999999999999999855
No 84
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=85.81 E-value=1.1 Score=41.19 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=23.0
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 45 ~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
+|+|||+ .||||++.-+.++|...|.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v 30 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHP 30 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCce
Confidence 5899995 589999999999998766443
No 85
>COG4240 Predicted kinase [General function prediction only]
Probab=85.67 E-value=1.4 Score=39.12 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=38.6
Q ss_pred HHHHcCCceeeHHHHHHhhCCCCCcEEEEeCC--CChHhHHHHHHHHHHhCC-CCeeeec
Q 017087 20 CLLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEAFVGG 76 (377)
Q Consensus 20 ~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGT--nGKTTT~~~l~~iL~~~g-~~~~~~g 76 (377)
.+++.-+|.+.+++-.++.. ...-+++|.|. .||||++..|..+|.+.| .+++..+
T Consensus 28 ~~~dl~Lpll~Kiap~~qe~-grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS 86 (300)
T COG4240 28 LAQDLHLPLLAKIAPWAQER-GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS 86 (300)
T ss_pred HHHHHHHHHHHhhhhhhhhc-CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee
Confidence 34555555555544333333 34569999995 789999999999999998 5665444
No 86
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=85.52 E-value=1.5 Score=36.93 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.3
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeee
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+++|+|+| -.||||.+..|...|...|++++..
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 36899999 6799999999999999999987543
No 87
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=85.22 E-value=1.8 Score=40.34 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhC
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~ 68 (377)
+...+|||+|.| ||||++.+|..+|...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 345699999965 7999999999999854
No 88
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=85.20 E-value=1.3 Score=40.58 Aligned_cols=29 Identities=34% Similarity=0.357 Sum_probs=24.5
Q ss_pred EEEe--CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 46 I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
|+|+ |-.|||||+.-|++.|...|+++.+
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvll 33 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQ 33 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 4444 5779999999999999999999854
No 89
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=85.12 E-value=1.4 Score=40.61 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=29.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
+.++|.++|. .|||||+.-|+..|...|.++.+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4568888884 58999999999999999988876553
No 90
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=84.76 E-value=1.4 Score=41.17 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=25.4
Q ss_pred EEEEe--CCCChHhHHHHHHHHHHhCCCCeeee
Q 017087 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 45 ~I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+|+|. |-.|||||+..|++.|...|+++.+.
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlI 34 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQL 34 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 44444 57899999999999999999998653
No 91
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=84.70 E-value=0.19 Score=50.16 Aligned_cols=123 Identities=22% Similarity=0.203 Sum_probs=71.3
Q ss_pred CcHHHHHHHHcCCc-eeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCC-eeeeccccchhhhhhhhccc
Q 017087 14 KATGLACLLQSGKR-VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGNPLSEAAFHCIA 91 (377)
Q Consensus 14 ~~p~~~~a~~~~~~-~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~-~~~~g~~g~~~~~~~~~~~~ 91 (377)
.+-....|.+.|.- ++...+. .......++|.|+||+||++|+.+..+.+.....+ ++..|+.|-.-....+....
T Consensus 36 g~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~ 113 (475)
T COG0769 36 GHDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQIL 113 (475)
T ss_pred cccchHhHhhCCCEEEEecccc--cccccCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHH
Confidence 34445667777744 3444444 22223456999999999999999999999874344 34445554332221111111
Q ss_pred CCCCCCCccEEEEEeCcc--ccccCCccccccEEEEecCCcchhcCCCCH
Q 017087 92 LPSSKPKFQVAVVEVSSY--QMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139 (377)
Q Consensus 92 ~~~~~~~~~~~ViE~~~~--~l~~~~~~~~p~i~ViTni~~dHl~~~gt~ 139 (377)
.. ......+++.|..+. +.........|+...++|+-.|++|..++.
T Consensus 114 ~~-~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~ 162 (475)
T COG0769 114 KK-LGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEI 162 (475)
T ss_pred Hh-cCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcE
Confidence 11 123345566665433 211122246789999999988888877643
No 92
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=84.52 E-value=1.2 Score=40.30 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=24.6
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCCee
Q 017087 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 45 ~I~VTGTnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
++++.|-.||||++.-|++.|+..|.+|.
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vl 34 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVL 34 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 45566678999999999999999998873
No 93
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=84.27 E-value=1.7 Score=41.24 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=30.6
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
++.++|+|+| ..||||++.-|+..|.+.|+++.+..
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid 66 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIG 66 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4567888887 78999999999999999999986543
No 94
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=84.10 E-value=1.3 Score=38.12 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=24.5
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 45 ~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+.+.-|=.||||++..|+..|...|+++.+
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~Vll 32 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLL 32 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccc
Confidence 345557789999999999999999999854
No 95
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=83.62 E-value=1.6 Score=36.62 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=26.1
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+|+|+| -.||||++..|...|+..|+++++.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 467777 45899999999999999999986544
No 96
>PRK14974 cell division protein FtsY; Provisional
Probab=83.57 E-value=2 Score=40.96 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=28.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
..+|+++|. .|||||...+++.|...|.++.+..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~ 175 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA 175 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 468999995 4799999999999999998886544
No 97
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=83.53 E-value=2.7 Score=39.28 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=45.2
Q ss_pred CCcHHHH-HHHHcCCcee--eHHHHH--Hhh----CCCCCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 13 LKATGLA-CLLQSGKRVM--SELDFA--AQV----IPRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 13 ~~~p~~~-~a~~~~~~~l--~~~~~~--~~~----~~~~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
.++|++. .|.+.|.++. +++..- ... .+.+.+++.|-|| .||=||+..|...+++.|++++..++
T Consensus 109 s~dp~~~k~A~~~G~rl~dvR~p~~~l~~~~tG~~~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaT 185 (339)
T COG3367 109 SDDPEFVKLAERTGVRLDDVRKPPLDLEYLCTGMARKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVAT 185 (339)
T ss_pred hcChHHHHHHHHcCCeeEeeccCccchhhhccCcccccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEec
Confidence 5677775 4677777553 333221 111 1235679999998 59999999999999999999765443
No 98
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=83.49 E-value=1.8 Score=40.37 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=28.0
Q ss_pred CCcEEEEe--CCCChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
++++|+|. |-.|||||+.-|+..|.+.|+++.+.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45677666 46789999999999999999998654
No 99
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=83.39 E-value=1.7 Score=40.04 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.1
Q ss_pred EEEEe--CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 45 ~I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+|+|. |=.|||||+.-|+..|.+.|+++.+
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vll 33 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMI 33 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence 45555 4789999999999999999998854
No 100
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=83.29 E-value=1.7 Score=42.67 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=29.7
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+++|+|+| -.||||...-|-..|+..|++++++-
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIK 36 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVK 36 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 46899999 77999999999999999999987643
No 101
>PRK00784 cobyric acid synthase; Provisional
Probab=83.25 E-value=1.4 Score=44.24 Aligned_cols=30 Identities=40% Similarity=0.479 Sum_probs=26.3
Q ss_pred cEEEEeCC---CChHhHHHHHHHHHHhCCCCee
Q 017087 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 44 ~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
+.|-|||| .|||+++..|.+.|++.|++++
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~ 35 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVA 35 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEe
Confidence 46788887 8999999999999999998764
No 102
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=83.04 E-value=1.3 Score=40.68 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.1
Q ss_pred eCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
-|-.|||||+.-|+..|...|+++.+
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLl 33 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQ 33 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEE
Confidence 46789999999999999999999854
No 103
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=83.03 E-value=3.1 Score=37.90 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=66.9
Q ss_pred HHHcCCceeeHHHHHHhhCC--CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeeccc-cchhhhhh-------hh
Q 017087 21 LLQSGKRVMSELDFAAQVIP--RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNL-GNPLSEAA-------FH 88 (377)
Q Consensus 21 a~~~~~~~l~~~~~~~~~~~--~~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g~~-g~~~~~~~-------~~ 88 (377)
..|++-| ...+++.++++ .+..+|||||+ .||||...-+...|.+.|.++++...- .+|++... +.
T Consensus 7 lvE~~~~--~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~ 84 (266)
T PF03308_consen 7 LVENRRP--EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQ 84 (266)
T ss_dssp HHH-SSH--HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCH
T ss_pred HHhCCCH--HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhc
Confidence 4455555 33344555442 35679999997 579999999999999999998653321 11211111 00
Q ss_pred cc-----------cCC----------------CCCCCccEEEEEeC-ccccccCC-ccccccEEEEecCCcchhcCCCCH
Q 017087 89 CI-----------ALP----------------SSKPKFQVAVVEVS-SYQMEIPN-KYFCPTVSVVLNLTPDHLERHKTM 139 (377)
Q Consensus 89 ~~-----------~~~----------------~~~~~~~~~ViE~~-~~~l~~~~-~~~~p~i~ViTni~~dHl~~~gt~ 139 (377)
.. .+. ....++|+.++|+- .|+-+..- .....-+.|++.=.-|-+.
T Consensus 85 ~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ----- 159 (266)
T PF03308_consen 85 ELSRDPGVFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQ----- 159 (266)
T ss_dssp HHHTSTTEEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCC-----
T ss_pred CcCCCCCEEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHH-----
Confidence 00 000 01346899999985 46544211 1232344555554444433
Q ss_pred HHHHHHHHHhcccCCCCceEEEeCCCh
Q 017087 140 KNYALTKCHLFSHMVNTKLGLLPFGNQ 166 (377)
Q Consensus 140 e~~~~~K~~i~~~~~~~~~~v~n~dd~ 166 (377)
..|+++++- ....|+|..|.
T Consensus 160 ----~~KaGimEi---aDi~vVNKaD~ 179 (266)
T PF03308_consen 160 ----AIKAGIMEI---ADIFVVNKADR 179 (266)
T ss_dssp ----TB-TTHHHH----SEEEEE--SH
T ss_pred ----HHhhhhhhh---ccEEEEeCCCh
Confidence 346666654 45789998884
No 104
>PRK11670 antiporter inner membrane protein; Provisional
Probab=82.78 E-value=1.9 Score=41.65 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 42 ~~~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
-.++|+|+ |-.|||||+.-|+..|.+.|+++.+
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlL 141 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGI 141 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 34789997 5678999999999999999999864
No 105
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=82.77 E-value=1.2 Score=39.50 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.5
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhC
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHL 68 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~ 68 (377)
..+|||+| ..||||.+..|...|...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 36999999 789999999999999744
No 106
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=82.64 E-value=2.3 Score=41.88 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=29.6
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
..+|.++| -.|||||+.-|+..|+..|.++.+...
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 46888888 568999999999999999999876554
No 107
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=82.00 E-value=2.4 Score=40.07 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=29.2
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
+..+|++.|. .|||||+..|+..|...|.++.+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3468888885 47999999999999999988876553
No 108
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=81.47 E-value=2.7 Score=35.89 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
..++++|+| -.||||...-|...|...|++++..-
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence 467999999 56999999999999998898885443
No 109
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=81.35 E-value=1.6 Score=40.69 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.2
Q ss_pred eCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
-|-.|||||+.-|++.|...|+++.+
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVLl 33 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVLQ 33 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 35789999999999999999999854
No 110
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=81.25 E-value=2 Score=36.36 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.2
Q ss_pred EEEeCCCChHhHHHHHHHHHHhCCCCeeee
Q 017087 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 46 I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
..-.|-.||||++..|+..|...|+++.+.
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344577899999999999999999998654
No 111
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=81.23 E-value=2.2 Score=38.56 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=25.8
Q ss_pred cEEEEeC---CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+|++ -.||||++.-++..|...|+++.+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vll 35 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVL 35 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEE
Confidence 4677765 678999999999999999988754
No 112
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=80.76 E-value=4.6 Score=34.60 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.9
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
++..+|..|| -.||||.+..+...|.+.|+.+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4557999999 57899999999999999999863
No 113
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.61 E-value=3.6 Score=40.12 Aligned_cols=109 Identities=10% Similarity=0.034 Sum_probs=61.4
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc-ccchhhhhhhhcccCCCCCCCccEEEEEeCc-------ccc
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS-------YQM 111 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~-------~~l 111 (377)
...+|-..| -.|||||+.=|+..|+..|+++.+.+. .-.|-....+.. ....-+++++-.+.+- .++
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~---La~q~~v~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQ---LAEQVGVPFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHH---HHHHcCCceecCCCCCCHHHHHHHHH
Confidence 345676666 579999999999999999999976554 223322222211 1112223322221111 122
Q ss_pred ccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceE
Q 017087 112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159 (377)
Q Consensus 112 ~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~ 159 (377)
+... .-..|+.|+=.-++.|+| ++..++-..|-+.+.|..++
T Consensus 176 ~~ak-~~~~DvvIvDTAGRl~id-----e~Lm~El~~Ik~~~~P~E~l 217 (451)
T COG0541 176 EKAK-EEGYDVVIVDTAGRLHID-----EELMDELKEIKEVINPDETL 217 (451)
T ss_pred HHHH-HcCCCEEEEeCCCccccc-----HHHHHHHHHHHhhcCCCeEE
Confidence 2111 123489999888888886 45555555555555565543
No 114
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=80.49 E-value=2.4 Score=36.92 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=26.2
Q ss_pred cEEEEeCC---CChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+.|-|||| .|||+++.-|.+.|++.|.+++.
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~ 34 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGY 34 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 35678887 59999999999999999999854
No 115
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=80.48 E-value=1.8 Score=39.69 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=25.6
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+|+ |-.|||||+.-|++.|...|+++.+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLl 35 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQ 35 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 455554 5779999999999999999998854
No 116
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=80.32 E-value=1.9 Score=38.77 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=25.8
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+|+ |-.|||||+..|+..|...|+++.+
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vll 35 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVAL 35 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 466666 4568999999999999999998754
No 117
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=80.29 E-value=1.6 Score=36.17 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=21.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~ 72 (377)
..|-|.||||- ||||+++.|+..+ |++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~---~~~~ 35 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT---GLEY 35 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh---CCce
Confidence 34678999985 7999999999665 5554
No 118
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=80.28 E-value=2.5 Score=37.71 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHh
Q 017087 45 ILAVTGT--NGKSTVVTFVGQMLNH 67 (377)
Q Consensus 45 ~I~VTGT--nGKTTT~~~l~~iL~~ 67 (377)
+|||+|. .||||++..|...|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 4789995 5899999999999975
No 119
>PRK13236 nitrogenase reductase; Reviewed
Probab=80.19 E-value=2.9 Score=39.10 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=28.1
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
++++|.|.| -.|||||+.-|++.|.+.|+++.+.
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 456666654 6799999999999999999998653
No 120
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=79.72 E-value=2.8 Score=37.54 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=25.8
Q ss_pred EEEEeCC---CChHhHHHHHHHHHHhCCCCeeee
Q 017087 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 45 ~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
.|-|||| .|||+++..|.+.|++.|.+++..
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~ 37 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGY 37 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4666665 799999999999999999988543
No 121
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=79.64 E-value=2.9 Score=31.96 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=34.5
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhhcccCCCCCCCccEEEEEeCcc
Q 017087 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (377)
Q Consensus 45 ~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~ 109 (377)
+.+--|-.||||++.-++..|.+.|.++.+.-. +..+|+.|+.++.+
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~------------------d~~~d~viiD~p~~ 50 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDL------------------DPQYDYIIIDTPPS 50 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC------------------CCCCCEEEEeCcCC
Confidence 445567899999999999999998887643221 22267888988754
No 122
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=79.61 E-value=2.4 Score=36.88 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.7
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 017087 45 ILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL 65 (377)
+|+|+| ..||||++.+|..+|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 478898 579999999999998
No 123
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=79.52 E-value=5.8 Score=33.97 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=31.6
Q ss_pred eHHHHHHhhCCCCCcEEEEeC--CCChHhHHHHHHHHHHhCCCC
Q 017087 30 SELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (377)
Q Consensus 30 ~~~~~~~~~~~~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~ 71 (377)
+..+...+.. +...+|.++| ..||||.+..|...|...|..
T Consensus 6 ~~~~~~~~~~-~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~ 48 (184)
T TIGR00455 6 TKDERQALNG-HRGVVIWLTGLSGSGKSTIANALEKKLESKGYR 48 (184)
T ss_pred CHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 4444555554 4567999999 889999999999999877654
No 124
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=79.49 E-value=3.6 Score=34.55 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=25.9
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCCee
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
.+|.+||. .||||.+..|.+-|.+.|.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~ 34 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVY 34 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 58999994 6899999999999999998874
No 125
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=79.28 E-value=3.1 Score=39.14 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=30.2
Q ss_pred CCcEEEEe----CCCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVT----GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VT----GTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+.|||.|- |-.|||.++.+|...|++.|+++++.+
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 65 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS 65 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence 56889884 889999999999999999999986543
No 126
>PRK00889 adenylylsulfate kinase; Provisional
Probab=79.22 E-value=3.9 Score=34.66 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=27.1
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
++..+|.++| -.||||++..|+..|...|.++.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~ 36 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVE 36 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3567999999 56899999999999988776553
No 127
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=78.79 E-value=4.5 Score=32.85 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=31.2
Q ss_pred EEeCC-CChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhhcccCCCCCCCccEEEEEeC
Q 017087 47 AVTGT-NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVS 107 (377)
Q Consensus 47 ~VTGT-nGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~ 107 (377)
-|||+ .|||+++.-+...|++.|.+++..- | ...+|+.++|-.
T Consensus 4 ~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~k----p--------------~~~~d~vliEGa 47 (134)
T cd03109 4 FGTGTDIGKTVATAILARALKEKGYRVAPLK----P--------------VQTYDFVLVEGA 47 (134)
T ss_pred EeCCCCcCHHHHHHHHHHHHHHCCCeEEEEe----c--------------CCCCCEEEEECC
Confidence 34443 7999999999999999999884321 1 112688999976
No 128
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=78.63 E-value=3.5 Score=35.40 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=26.2
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCeeee
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+|+|.| ..||||.+..|+..|...|.++...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 578888 5799999999999999989887443
No 129
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=77.87 E-value=2.6 Score=35.57 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=23.0
Q ss_pred eCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
-|-.||||++.-|+..|.+.|+++.+
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vll 33 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGL 33 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEE
Confidence 46779999999999999999999864
No 130
>PRK03846 adenylylsulfate kinase; Provisional
Probab=77.59 E-value=6.3 Score=34.30 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=31.8
Q ss_pred eHHHHHHhhCCCCCcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 30 SELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 30 ~~~~~~~~~~~~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
+..+...++- ++..+|+++| -.||||.+..|...|...|..+
T Consensus 12 ~~~~~~~~~~-~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~ 55 (198)
T PRK03846 12 TKAQREQLHG-HKGVVLWFTGLSGSGKSTVAGALEEALHELGVST 55 (198)
T ss_pred CHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 4445555554 4667999999 7899999999999997776543
No 131
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=77.50 E-value=2.1 Score=41.61 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=23.6
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHh----CCCCeeeecc
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNH----LGIEAFVGGN 77 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~----~g~~~~~~g~ 77 (377)
.+|.+.|. .|||||+.-|++.|.. .|.++.+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~ 214 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI 214 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec
Confidence 45555553 4899999999998874 3667765443
No 132
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=77.41 E-value=4.4 Score=32.07 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.8
Q ss_pred CCCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 50 GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 50 GTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
|..||||++..+++.|.+.|.++....
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 478999999999999999998875433
No 133
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=77.36 E-value=2.5 Score=33.22 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCCee
Q 017087 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 45 ~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
+|+|+|. .||||++..|+.-| |..+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i 28 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVI 28 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEE
Confidence 5778884 69999999999987 55543
No 134
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=77.08 E-value=3.2 Score=41.32 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=26.4
Q ss_pred CcEEEEeCCC---ChHhHHHHHHHHHHhCCCCee
Q 017087 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 43 ~~~I~VTGTn---GKTTT~~~l~~iL~~~g~~~~ 73 (377)
++.|-||||. |||+++..|...|++.|+++.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~ 36 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQ 36 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcc
Confidence 5678888874 599999999999999998764
No 135
>CHL00175 minD septum-site determining protein; Validated
Probab=76.99 E-value=4.1 Score=37.56 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=28.0
Q ss_pred CCcEEEEeC---CCChHhHHHHHHHHHHhCCCCeee
Q 017087 42 SIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
..++|+|++ -.||||++.-|++.|...|+++.+
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vll 49 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVAL 49 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence 456888876 568999999999999999998864
No 136
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=76.84 E-value=2.4 Score=37.27 Aligned_cols=30 Identities=33% Similarity=0.572 Sum_probs=22.9
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+.+||+|| -.||||++.+++. .|..+...+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~----~G~~vidaD 33 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE----LGFPVIDAD 33 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH----cCCeEEEcc
Confidence 46899999 5899999987776 477764444
No 137
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=76.82 E-value=1.7 Score=37.45 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCCcEEEEeCCCChH--hHHHHHHHHHHhCCCCe
Q 017087 41 RSIKILAVTGTNGKS--TVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 41 ~~~~~I~VTGTnGKT--TT~~~l~~iL~~~g~~~ 72 (377)
.+.++|+||||.|-+ ||+.-...|++....+.
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~a 36 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHA 36 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCccH
Confidence 467899999998765 45556677888776654
No 138
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=76.55 E-value=4.5 Score=37.15 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=28.3
Q ss_pred CCcEEEEeC---CCChHhHHHHHHHHHHhCCCCeee
Q 017087 42 SIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
..++|+||. --|||||+..|+..|.+.|+++++
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVll 91 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLL 91 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 456888885 568999999999999999999864
No 139
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=76.38 E-value=4.3 Score=38.66 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=29.6
Q ss_pred CCcEEEE----eCCCChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~V----TGTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+.|||.| .|-.|||-++.+|...|++.|+++++.
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~Il 92 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVV 92 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEE
Confidence 5678887 688999999999999999999998543
No 140
>PTZ00301 uridine kinase; Provisional
Probab=76.15 E-value=3.3 Score=36.63 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=20.6
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHH
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~ 66 (377)
+..+|||+| ..||||.+..|.+-|.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 347999999 7899999998876664
No 141
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=75.99 E-value=3.9 Score=36.21 Aligned_cols=29 Identities=38% Similarity=0.414 Sum_probs=23.9
Q ss_pred EEEeCC---CChHhHHHHHHHHHHhCCCCeee
Q 017087 46 LAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 46 I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
|-|||| .|||+++..|.+.|++.|++++.
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~ 33 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAG 33 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEE
Confidence 345554 69999999999999999998754
No 142
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=75.96 E-value=4.9 Score=33.97 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=26.3
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
++.++| ..||||++..++..|.+.|.++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 566777 56999999999999999998876544
No 143
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=75.90 E-value=3.7 Score=35.38 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=26.7
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
.+.|.|.| ..||||.+.+|++-|...|+++.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~ 35 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVL 35 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 35799999 57999999999999999887763
No 144
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=75.63 E-value=3.9 Score=34.48 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=26.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
.--|+|||. .||||.+.-|+..|+..|+++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 346999995 689999999999999999887
No 145
>PRK05480 uridine/cytidine kinase; Provisional
Probab=75.61 E-value=3.4 Score=36.20 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.7
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHH
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
++..+|+|+| ..||||.+..|...|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999 469999999999988
No 146
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=75.49 E-value=3.4 Score=37.16 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=24.8
Q ss_pred EEEEe---CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 45 ~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+|+|+ |-.||||++.-|++.|...|+++.+
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vll 34 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLA 34 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 44444 6789999999999999999998754
No 147
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=75.46 E-value=6.6 Score=38.38 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.7
Q ss_pred EEEeCC---CChHhHHHHHHHHHHhCCCCe
Q 017087 46 LAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 46 I~VTGT---nGKTTT~~~l~~iL~~~g~~~ 72 (377)
|.|+|| .||||+|.-|-..|++.|.++
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~V 32 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKV 32 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcc
Confidence 556665 599999999999999998776
No 148
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=75.43 E-value=5 Score=33.34 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCCCcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 40 PRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 40 ~~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
.++.-+|.||| -.||+|.+..|.+.|-+.|..+
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~ 62 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLT 62 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceE
Confidence 35677999999 5799999999999999999865
No 149
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=75.28 E-value=5.6 Score=42.22 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCCcEEEEeCCC---ChHhHHHHHHHHHHhCCCCeeee
Q 017087 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 41 ~~~~~I~VTGTn---GKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+..++|+||++. ||||++.-|+..|...|.++.+.
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlI 566 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 566 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 456899999965 99999999999999999988543
No 150
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=75.17 E-value=5.2 Score=28.27 Aligned_cols=26 Identities=42% Similarity=0.553 Sum_probs=20.2
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
+|+|+| ..||||.+..+.+.| .+.++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~ 28 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSV 28 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCE
Confidence 477888 468999999999999 34444
No 151
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=74.92 E-value=6.5 Score=35.09 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=25.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCC
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~ 71 (377)
.+..+|+|+|-+ ||||.+..|...|...+-.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 356799999965 7999999999999876543
No 152
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=74.74 E-value=3.5 Score=36.89 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=26.0
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 44 ~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
++|.+. |-.||||++.+|++.|.+.|.++.++=
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lID 37 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALID 37 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445554 667899999999999999998886543
No 153
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=74.10 E-value=5.1 Score=38.03 Aligned_cols=35 Identities=20% Similarity=0.483 Sum_probs=30.4
Q ss_pred CCcEEEE----eCCCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~V----TGTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+.+||.| +|-.|||-++.+|...|++.|+++++.+
T Consensus 34 ~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlS 72 (326)
T PF02606_consen 34 PVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILS 72 (326)
T ss_pred CCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEc
Confidence 6788887 6889999999999999999999985543
No 154
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=74.06 E-value=1.8 Score=39.54 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=24.1
Q ss_pred cEEEE--eCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAV--TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~V--TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+| -|-.|||||+.-|++.|...| ++.+
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLl 34 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLV 34 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEE
Confidence 34555 467899999999999999999 8754
No 155
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=73.74 E-value=4.2 Score=36.43 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=20.8
Q ss_pred EEEEeC--CCChHhHHHH-HHHHHHhCCCCe
Q 017087 45 ILAVTG--TNGKSTVVTF-VGQMLNHLGIEA 72 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~-l~~iL~~~g~~~ 72 (377)
.|+||| -.||||.+++ +..+++..|+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V 32 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV 32 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE
Confidence 578887 7899999999 666666554544
No 156
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=73.73 E-value=5.4 Score=32.90 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=24.6
Q ss_pred cEEEEeC---CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+|+| ..||||++..++..|.+.|.++.+
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vll 34 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLL 34 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEE
Confidence 3566666 679999999999999999987654
No 157
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=73.68 E-value=5.7 Score=39.32 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=27.9
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
..+|.++| -.|||||+.-|+..|...|+++.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 45777777 56999999999999999998887544
No 158
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=73.62 E-value=4.3 Score=36.85 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=24.1
Q ss_pred EEEEeCCCChHhHHHHHHHHHH-hCCCCeee
Q 017087 45 ILAVTGTNGKSTVVTFVGQMLN-HLGIEAFV 74 (377)
Q Consensus 45 ~I~VTGTnGKTTT~~~l~~iL~-~~g~~~~~ 74 (377)
+...-|-.|||||+..++..|. ..|+++.+
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVLl 37 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVLL 37 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEEE
Confidence 4455678899999999999999 55688754
No 159
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=73.51 E-value=3.5 Score=37.89 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=25.9
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHh-CCCCeeee
Q 017087 44 KILAVT--GTNGKSTVVTFVGQMLNH-LGIEAFVG 75 (377)
Q Consensus 44 ~~I~VT--GTnGKTTT~~~l~~iL~~-~g~~~~~~ 75 (377)
++|+|+ |-.|||||+.-|+..|.. .|+++.+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 466666 467899999999999997 69998654
No 160
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=73.40 E-value=6.1 Score=36.99 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=30.4
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
...++|+|+|. .||||++..+...|...|.++.+.+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45789999995 5899999999999999999886544
No 161
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=72.74 E-value=5.7 Score=38.38 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=30.8
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
..++|+|+| -.||||...-+-..|++.|+++++.-.
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 467999999 569999999999999999999865543
No 162
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=72.46 E-value=2.6 Score=35.29 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=15.4
Q ss_pred EEEeC--CCChHhHHHHHHHH
Q 017087 46 LAVTG--TNGKSTVVTFVGQM 64 (377)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~i 64 (377)
|+||| +.||||++.-|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 78999 57999999988866
No 163
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=72.43 E-value=3.9 Score=37.01 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=23.4
Q ss_pred EEEEe---CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 45 ~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+|.|. |-.|||||+.=++-.|...|+++++
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~ 34 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGL 34 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 45554 6779999999999999999999964
No 164
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=72.36 E-value=3.3 Score=35.65 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=18.8
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
+||||| -.||||++.++.. .|..+
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~v 27 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPV 27 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCE
Confidence 699999 5899999988765 57665
No 165
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=72.17 E-value=3.3 Score=36.14 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhC
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL 68 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~ 68 (377)
+.-+|||+| ..||||.+..++.+|..+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~ 31 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGC 31 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCC
Confidence 345899999 579999999999999643
No 166
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=71.45 E-value=4 Score=37.36 Aligned_cols=32 Identities=31% Similarity=0.287 Sum_probs=27.4
Q ss_pred CcEEEEe---CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 43 ~~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
..+|.|+ |-.|||||+..++..|...|.++++
T Consensus 47 k~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vgl 81 (300)
T KOG3022|consen 47 KHIILVLSGKGGVGKSTVTVNLALALASEGKKVGL 81 (300)
T ss_pred ceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEE
Confidence 3577776 7889999999999999999998854
No 167
>PRK10818 cell division inhibitor MinD; Provisional
Probab=71.33 E-value=5 Score=36.70 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=25.3
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+|+ |=.||||++.-|++.|...|+++.+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vll 36 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 466665 4678999999999999999988743
No 168
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=71.32 E-value=4 Score=37.03 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=17.6
Q ss_pred cEEEEeC--CCChHhHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQM 64 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~i 64 (377)
.+||||| -.||||++.++..-
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~ 24 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREE 24 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999 58999999887753
No 169
>PRK10867 signal recognition particle protein; Provisional
Probab=71.01 E-value=7 Score=38.62 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=28.6
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhC-CCCeeeecc
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHL-GIEAFVGGN 77 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~-g~~~~~~g~ 77 (377)
..+|.++| -.|||||+.-++..|... |.++.+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 45888888 468999999999999988 988876543
No 170
>PRK08233 hypothetical protein; Provisional
Probab=70.14 E-value=4.4 Score=34.37 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.3
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHH
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
..+|+|+|. .||||.+..|+..|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999994 689999999998874
No 171
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=69.75 E-value=6.9 Score=36.94 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=29.1
Q ss_pred CCcEEEE----eCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 42 ~~~~I~V----TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
..+||.| .|-+|||-++-.|..-|++.|.+++.
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gv 82 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGV 82 (336)
T ss_pred CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEE
Confidence 3678876 68999999999999999999999854
No 172
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=69.58 E-value=5.6 Score=33.56 Aligned_cols=30 Identities=27% Similarity=0.595 Sum_probs=24.0
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
+|.|+| -+||||++.+|+..| |+++.+.|.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~vsaG~ 33 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLVSAGT 33 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCceeeccH
Confidence 578888 579999999999887 777766564
No 173
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.36 E-value=7.5 Score=33.92 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=23.5
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 45 ~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
.+|-|| .|||||..=|++.+...|.++++...
T Consensus 6 lvGptG-vGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 6 LVGPTG-VGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp EEESTT-SSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EECCCC-CchHhHHHHHHHHHhhccccceeecC
Confidence 344455 49999999999999988988876554
No 174
>PRK00698 tmk thymidylate kinase; Validated
Probab=69.11 E-value=8.4 Score=33.35 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.5
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
...|.|.| ..||||.+..|+.-|...|..+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~ 34 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDV 34 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 35899999 6899999999999998887654
No 175
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=68.91 E-value=6.7 Score=30.32 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.2
Q ss_pred EEeCCCChHhHHHHHHHHHHhC-CCCeee
Q 017087 47 AVTGTNGKSTVVTFVGQMLNHL-GIEAFV 74 (377)
Q Consensus 47 ~VTGTnGKTTT~~~l~~iL~~~-g~~~~~ 74 (377)
+--|-.||||++.-|+..|.+. |.++.+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l 34 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLL 34 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEE
Confidence 3346779999999999999998 988754
No 176
>PRK11519 tyrosine kinase; Provisional
Probab=68.90 E-value=9.7 Score=40.38 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=30.2
Q ss_pred CCCcEEEEeC---CCChHhHHHHHHHHHHhCCCCeeee
Q 017087 41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 41 ~~~~~I~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
++.++|.||+ -.||||++.-|+..|...|.++.+.
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlI 561 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI 561 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 3567999999 5699999999999999999998654
No 177
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=68.76 E-value=5.1 Score=40.14 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=21.2
Q ss_pred CChHhHHHHHHHHHHhCCCCeee
Q 017087 52 NGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 52 nGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
.|||.++..|...|++.|++++.
T Consensus 10 vGKT~v~~~L~~~l~~~G~~v~~ 32 (475)
T TIGR00313 10 AGKSTLTAGLCRILARRGYRVAP 32 (475)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEE
Confidence 79999999999999999998754
No 178
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=68.53 E-value=8 Score=37.94 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=27.9
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+..+|||+|- .||||.+..|..+|+..|.+++...
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvIS 247 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLS 247 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 3468999995 6899999999999988777665443
No 179
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=68.50 E-value=7.8 Score=36.20 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=54.7
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeeecc---------ccchhhhhh-------hhcccCCCCCCCccEE
Q 017087 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN---------LGNPLSEAA-------FHCIALPSSKPKFQVA 102 (377)
Q Consensus 42 ~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~g~---------~g~~~~~~~-------~~~~~~~~~~~~~~~~ 102 (377)
+.++|++-|| .||=||+.+|...|++.|+++...++ .|.++.... .+........ +.|+.
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~-~~d~i 189 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAE-EHDWI 189 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCC-C-SEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCc-CCCEE
Confidence 5679999996 69999999999999999999865554 233322110 0000000012 33889
Q ss_pred EEEeCccccc--c----CCcc--ccccEEEEec-CCcchhcCC-----CCHHHHHHHHHHhcc
Q 017087 103 VVEVSSYQME--I----PNKY--FCPTVSVVLN-LTPDHLERH-----KTMKNYALTKCHLFS 151 (377)
Q Consensus 103 ViE~~~~~l~--~----~~~~--~~p~i~ViTn-i~~dHl~~~-----gt~e~~~~~K~~i~~ 151 (377)
++|-=.+=.+ + +... -+||..|+-- -++-|.+.| +++++..+.-..+..
T Consensus 190 vVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la~ 252 (301)
T PF07755_consen 190 VVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALAG 252 (301)
T ss_dssp EEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCCC
T ss_pred EEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhhc
Confidence 9996421111 0 1111 3688777644 555666654 466666665554443
No 180
>PRK13768 GTPase; Provisional
Probab=68.34 E-value=8.2 Score=35.16 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=24.1
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+|.|+| ..||||++.-++..|...|.++.+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~ 35 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAI 35 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEE
Confidence 556665 679999999999999988887643
No 181
>PLN02796 D-glycerate 3-kinase
Probab=68.28 E-value=7.9 Score=36.94 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=26.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
.-+|||+|. .||||++..|..+|...|.+++...
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~Is 135 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLS 135 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEE
Confidence 357999995 5899999999999987776554333
No 182
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.95 E-value=9.7 Score=37.17 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=28.0
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
.+|++.| -.|||||...|+.-|...|.++++...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 5777877 458999999999999999988876554
No 183
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=67.49 E-value=7.3 Score=38.74 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.3
Q ss_pred eCC-CChHhHHHHHHHHHHhCCCCeee
Q 017087 49 TGT-NGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 49 TGT-nGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
|+| .|||+++.-|...|++.|+++..
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~ 33 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQP 33 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeE
Confidence 444 79999999999999999998754
No 184
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=66.55 E-value=8.6 Score=39.74 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=30.9
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
.+++|+|+| -.||||...-|-..|++.|+++++.-.
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 468999999 679999999999999999999865443
No 185
>PLN02924 thymidylate kinase
Probab=66.48 E-value=9.3 Score=34.01 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=28.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
....|+|.| -.||||-+.+|+..|+..|.++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~ 48 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE 48 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 456899999 68999999999999999998763
No 186
>PLN02348 phosphoribulokinase
Probab=66.46 E-value=7.5 Score=37.73 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=24.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCC
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g 69 (377)
...+|||+| -.||||.+..|..+|...+
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~ 77 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFGGAA 77 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcc
Confidence 456999999 6799999999999997554
No 187
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=66.31 E-value=7.5 Score=34.53 Aligned_cols=45 Identities=31% Similarity=0.350 Sum_probs=27.0
Q ss_pred cCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHH-hCCCCe
Q 017087 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLN-HLGIEA 72 (377)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~-~~g~~~ 72 (377)
.++|+.=.++-+. .++.-++|-||| |||+|+..|-.=+. ..+.++
T Consensus 10 ~~v~v~l~~~~l~---~~H~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ 55 (229)
T PF01935_consen 10 SDVPVYLDLNKLF---NRHIAIFGTTGS-GKSNTVKVLLEELLKKKGAKV 55 (229)
T ss_pred CCceEEeeHHHhc---cceEEEECCCCC-CHHHHHHHHHHHHHhcCCCCE
Confidence 3466655553332 134457777776 99998877666555 555544
No 188
>PRK07933 thymidylate kinase; Validated
Probab=66.16 E-value=10 Score=33.52 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=25.4
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
.|+|-| -.||||.+.+|...|+..|.++..
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~ 33 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVAT 33 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 567777 579999999999999999988743
No 189
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=65.95 E-value=6.2 Score=33.25 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.2
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHh
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNH 67 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~ 67 (377)
.++++|+| |.||||.+.-|+.++..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCC
Confidence 57899999 89999999999999853
No 190
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.66 E-value=5.1 Score=38.72 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=23.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH-hCC-CCeeeec
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~-~~g-~~~~~~g 76 (377)
..++++.|.+ |||||...|+.-+. ..| .++++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4577787754 79999999998764 345 4565444
No 191
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=65.45 E-value=9.2 Score=35.25 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=23.0
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
++.|.++| ..||||.+.-|...|...+..+
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v 32 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEV 32 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--E
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 36789999 8999999999999999865554
No 192
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=64.77 E-value=5.1 Score=34.70 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=18.1
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 017087 45 ILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL 65 (377)
+|+|+| ..||||.+..|...|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 488998 579999999998886
No 193
>PRK07429 phosphoribulokinase; Provisional
Probab=64.76 E-value=7 Score=37.12 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.9
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhC
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL 68 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~ 68 (377)
+..+|+|+| ..||||.+..|..+|...
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 456999999 568999999999999654
No 194
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=64.22 E-value=8.7 Score=33.87 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.3
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
++.|-+|| ..||||-+.=|+.+|++.+..+
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 36788999 8999999999999999987765
No 195
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=63.89 E-value=6.8 Score=34.47 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=20.6
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
.+||+|| ..||||.+.++..-| |..+
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~l---g~~v 34 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKL---NLNV 34 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHc---CCeE
Confidence 4799999 689999999988643 5544
No 196
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=63.12 E-value=13 Score=32.75 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=27.3
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
...|+|-| -.||||.+.+|...|++.|.++..
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~ 36 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVL 36 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 45788888 579999999999999999987643
No 197
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=63.09 E-value=12 Score=37.36 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=28.2
Q ss_pred CCcEEEEeC------CCChHhHHHHHHHHHHhCCCCee
Q 017087 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTG------TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
+.++|.||. --|||||+.=|++.|.+.|.++.
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l 74 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAI 74 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence 568999999 44999999999999999999864
No 198
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=62.26 E-value=9.4 Score=31.96 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=22.4
Q ss_pred CCChHhHHHHHHHHHHhCCCCeeee
Q 017087 51 TNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 51 TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
-.||||++.-|...|++.|.++++.
T Consensus 8 ~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 8 GVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4799999999999999999998663
No 199
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=61.87 E-value=13 Score=34.99 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=27.9
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhCCCCeeeecccc
Q 017087 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79 (377)
Q Consensus 44 ~~I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~~g~~g 79 (377)
++|-++ |-.||||++..++--+...|.++.+.++-.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dp 39 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDP 39 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESST
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCC
Confidence 344444 589999999999999999999987766543
No 200
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=61.83 E-value=7.3 Score=36.15 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCC
Q 017087 45 ILAVTGTNGKSTVVTFVGQMLNHLGIE 71 (377)
Q Consensus 45 ~I~VTGTnGKTTT~~~l~~iL~~~g~~ 71 (377)
..|=+|| |||+++..++..+...|..
T Consensus 63 l~G~pGT-GKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 63 FTGNPGT-GKTTVALRMAQILHRLGYV 88 (284)
T ss_pred EEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence 4566777 9999999999999887753
No 201
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=61.72 E-value=8.8 Score=33.59 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHh
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL~~ 67 (377)
+...+|+|+|. .||||.+..|...|..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45579999995 6999999999988864
No 202
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=61.45 E-value=14 Score=34.23 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=25.6
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhC-C-CCeeeec
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHL-G-IEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~-g-~~~~~~g 76 (377)
..+|++.|. .|||||+..|+..+... | .++.+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 458888884 58999999999988765 4 6665443
No 203
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=61.44 E-value=9.9 Score=34.79 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=22.3
Q ss_pred CCCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 50 GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 50 GTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
|--|||||++=|+..|...|+++...|
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iG 35 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIG 35 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CCcccChhhhHHHHHHHhccceeeEec
Confidence 467999999999999999999987666
No 204
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.19 E-value=14 Score=37.10 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=23.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH-hCCC-Ceee
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLN-HLGI-EAFV 74 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~-~~g~-~~~~ 74 (377)
..+|++.|.| |||||...|+..+. ..|. ++++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~L 291 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVAL 291 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3588888865 79999999998884 4453 5543
No 205
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=60.82 E-value=6.9 Score=32.76 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=16.2
Q ss_pred EEEEeCCCChHhHHHHHHHHHH
Q 017087 45 ILAVTGTNGKSTVVTFVGQMLN 66 (377)
Q Consensus 45 ~I~VTGTnGKTTT~~~l~~iL~ 66 (377)
++||+|| ||||...++.+-|.
T Consensus 17 vmGvsGs-GKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 17 VMGVSGS-GKSTIGKALSEELG 37 (191)
T ss_pred EEecCCC-ChhhHHHHHHHHhC
Confidence 4455553 89999999998885
No 206
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=60.23 E-value=8.2 Score=35.63 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCC
Q 017087 45 ILAVTGT--NGKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 45 ~I~VTGT--nGKTTT~~~l~~iL~~~g 69 (377)
+|+|+|. .||||.+.+|..+|...+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~ 27 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL 27 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 4789995 589999999999996544
No 207
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=60.21 E-value=10 Score=35.71 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=40.9
Q ss_pred CcHHHHHHHHcCCc-eeeHH-------HHHHhhC---CCCCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeee
Q 017087 14 KATGLACLLQSGKR-VMSEL-------DFAAQVI---PRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 14 ~~p~~~~a~~~~~~-~l~~~-------~~~~~~~---~~~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+...++.|+..|.. ++..+ +.+.+.. .+..++|+|+|. .||||++.-|++.|...|.++.+
T Consensus 53 ~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlL 127 (322)
T TIGR03815 53 GGALWRAAAAVGAEHVAVLPEAEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLL 127 (322)
T ss_pred CHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEE
Confidence 44455677777766 54322 1222321 235678888875 58999999999999998887743
No 208
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.96 E-value=17 Score=35.37 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=29.4
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
+.++|+++| -.|||||..-|+..+...|.++++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIta 242 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT 242 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 456888888 679999999999999888988865543
No 209
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=59.46 E-value=11 Score=34.01 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.1
Q ss_pred EeCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 48 VTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 48 VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
--|-.||||++..+++.|...|.++.+
T Consensus 10 ~KGGvGKSt~a~~la~~l~~~g~~vl~ 36 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKASKGQKPLC 36 (241)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence 346889999999999999999988744
No 210
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=59.27 E-value=1.1e+02 Score=25.76 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=79.2
Q ss_pred ChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcch
Q 017087 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132 (377)
Q Consensus 53 GKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dH 132 (377)
|=-|+..+|...+...|+.+...-.+|.-. ..+.-++-+-+|..........-++|+.|..+
T Consensus 4 Gv~t~g~ila~a~~~~G~~v~~~~~ygs~~-------------rGG~~~~~vris~~~~~~~~~~~~~Dilv~l~----- 65 (173)
T PF01558_consen 4 GVVTAGKILARAAAREGYYVQSTPEYGSEI-------------RGGPVVSHVRISDEPIIPSPPVGEADILVALD----- 65 (173)
T ss_dssp THHHHHHHHHHHHHHTTSEEEEEEEEESSS-------------SSSCEEEEEEEESS--SSSS-TSSESEEEESS-----
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCCChhh-------------cCCeEEEEEEEecCcCccCcccCCCCEEEEcC-----
Confidence 555888999999999999875544444321 23343455556654222111124689988875
Q ss_pred hcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccCcceeEeecCCCcccccccccceEEeccCCeeEEEEe
Q 017087 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQL 212 (377)
Q Consensus 133 l~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (377)
.+.+. ..+..++++|.+|+|.+.............. . .... ..+.++...
T Consensus 66 ------~~~~~----~~~~~l~~~g~vi~ns~~~~~~~~~~~~~~~----------~-~~~~--~v~~ip~~~------- 115 (173)
T PF01558_consen 66 ------PEALE----RHLKGLKPGGVVIINSSLVKPEPEEKDKPAY----------F-PRIE--RVIGIPATE------- 115 (173)
T ss_dssp ------HHHHH----HCGTTCETTEEEEEETTT-CHHHHHHHCCCH----------H-HHHC--EEEEE-HHH-------
T ss_pred ------HHHHH----HHhcCcCcCeEEEEECCCCCcHhHhhccccc----------c-ccce--eEEeccHHH-------
Confidence 22232 5667778899999998653322221111000 0 0000 001110000
Q ss_pred eccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 017087 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252 (377)
Q Consensus 213 ~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~ 252 (377)
......+..-..|..+.- +++..++++.+.+.+++++.
T Consensus 116 ia~~~~~~~~~~N~~~lG--a~~~~~~l~~e~~~~~i~~~ 153 (173)
T PF01558_consen 116 IAKELGGNPRFANMVMLG--ALAKLLGLPLESLEEAIKER 153 (173)
T ss_dssp HHHHTTS-GGGHHHHHHH--HHHHHHTS-HHHHHHHHHHH
T ss_pred HHHhhhcchhhHHHHHHH--HHHHHcCCCHHHHHHHHHHH
Confidence 011223335666776554 67788899999999999874
No 211
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=58.48 E-value=17 Score=35.87 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=26.9
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHH-hCCCCeeeecc
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLN-HLGIEAFVGGN 77 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~-~~g~~~~~~g~ 77 (377)
..+|.++| -.|||||+.-++..|. +.|.++.+...
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~ 136 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC 136 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 34777777 4689999999999886 57888865443
No 212
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=58.07 E-value=10 Score=33.14 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=19.8
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
.+|+||| -.||||.+.++.. .|..+
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~v 28 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLI 28 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 5799999 4789999999874 46654
No 213
>PLN02422 dephospho-CoA kinase
Probab=57.93 E-value=10 Score=34.06 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=20.6
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
+.|+||| -.||||.+.++.. .|..+.
T Consensus 2 ~~igltG~igsGKstv~~~l~~----~g~~~i 29 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS----SGIPVV 29 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 4799999 5799999998873 576653
No 214
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=57.49 E-value=13 Score=31.81 Aligned_cols=28 Identities=39% Similarity=0.636 Sum_probs=21.2
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+|+||| -.||||.+.++.. .|..+....
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~i~~D 30 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPVIDAD 30 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCEEecC
Confidence 489999 5799999999887 476654333
No 215
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=57.38 E-value=18 Score=36.56 Aligned_cols=33 Identities=36% Similarity=0.524 Sum_probs=28.7
Q ss_pred CCcEEEEeC------CCChHhHHHHHHHHHHhCCCCeee
Q 017087 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTG------TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+.++|.||. .-|||||+.=|+..|.+.|.++.+
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvll 92 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVI 92 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 468999999 348999999999999999998753
No 216
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=56.97 E-value=15 Score=29.89 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=35.6
Q ss_pred EEEeCCCChHhHHHHHHHHHHhCCCCeeeecc-ccchhhhhhhhcccCCCCCCCccEEEEEeCcc
Q 017087 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (377)
Q Consensus 46 I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~ 109 (377)
.+..|-.||||++..++..|...|.++.+... ... ..-++|+.|+.++.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~--------------~~~~yd~VIiD~p~~ 55 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL--------------ANLDYDYIIIDTGAG 55 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC--------------CCCCCCEEEEECCCC
Confidence 44567889999999999999999988754321 111 112278899999854
No 217
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=56.96 E-value=11 Score=32.75 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=20.2
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
..|+||| -.||||.+.++.. + |..+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~---g~~~ 29 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-L---GAPV 29 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c---CCEE
Confidence 5799999 5799999998887 3 6554
No 218
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=56.88 E-value=9.5 Score=34.42 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.9
Q ss_pred CChHhHHHHHHHHHHhCCCCee
Q 017087 52 NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 52 nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
.||||-+.-+.+.++..|.++.
T Consensus 7 SGKTT~~~~~~~~~~~~~~~~~ 28 (238)
T PF03029_consen 7 SGKTTFCKGLSEWLESNGRDVY 28 (238)
T ss_dssp SSHHHHHHHHHHHHTTT-S-EE
T ss_pred CCHHHHHHHHHHHHHhccCCce
Confidence 5999999999999999887764
No 219
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=56.83 E-value=18 Score=33.22 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=21.7
Q ss_pred cEEEEe---CCCChHhHHHHH-HHHHHhCCCCe
Q 017087 44 KILAVT---GTNGKSTVVTFV-GQMLNHLGIEA 72 (377)
Q Consensus 44 ~~I~VT---GTnGKTTT~~~l-~~iL~~~g~~~ 72 (377)
++|+|+ |-.||||++.-+ +.+++..|.++
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V 35 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVV 35 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCeE
Confidence 577777 789999999999 55555555553
No 220
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=56.15 E-value=69 Score=31.61 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=25.6
Q ss_pred CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhc
Q 017087 305 FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMA 342 (377)
Q Consensus 305 ~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~ 342 (377)
.|...++-.+.+++.|+ ++..++|++||++.+.+.+
T Consensus 385 ~Gtn~~~g~~~l~~~~~--~~~~~~~l~~A~~~~v~~~ 420 (422)
T PLN00124 385 EGTNVDQGKRILKESGM--TLITAEDLDDAAEKAVKAL 420 (422)
T ss_pred CCCCHHHHHHHHHhCCC--CeEEcCCHHHHHHHHHHHh
Confidence 45566666777776654 4667889999999887653
No 221
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=56.04 E-value=8.4 Score=37.90 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=50.4
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccc
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYF 118 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~ 118 (377)
....-|.|+|. .||||-+.-++..+...|+-+ -++.+|-... + .+.=.+|.=+|.++......-...
T Consensus 261 eraeGILIAG~PGaGKsTFaqAlAefy~~~GkiV---KTmEsPRDl~-v-------~~eITQYs~l~g~me~t~DiLLLv 329 (604)
T COG1855 261 ERAEGILIAGAPGAGKSTFAQALAEFYASQGKIV---KTMESPRDLQ-V-------SPEITQYSPLEGDMEKTADILLLV 329 (604)
T ss_pred hhhcceEEecCCCCChhHHHHHHHHHHHhcCcEE---eeccCccccc-C-------ChhhhhcccccCchhhhccEEEEe
Confidence 45678999995 689999999999999999866 4555553221 1 112235566676665444332346
Q ss_pred cccEEEEecCC
Q 017087 119 CPTVSVVLNLT 129 (377)
Q Consensus 119 ~p~i~ViTni~ 129 (377)
+||+.|+--+.
T Consensus 330 RPDYTIyDEmR 340 (604)
T COG1855 330 RPDYTIYDEMR 340 (604)
T ss_pred cCCceehhhhh
Confidence 78887765443
No 222
>PRK13973 thymidylate kinase; Provisional
Probab=56.02 E-value=20 Score=31.50 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=26.3
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
..|.|-| -.||||.+.+|+..|...|+++..
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~ 36 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLV 36 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5677777 479999999999999999988743
No 223
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=55.85 E-value=6.9 Score=32.50 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=17.3
Q ss_pred EEeCCCChHhHHHHHHHHHHhC
Q 017087 47 AVTGTNGKSTVVTFVGQMLNHL 68 (377)
Q Consensus 47 ~VTGTnGKTTT~~~l~~iL~~~ 68 (377)
||+|| ||||+..+|++-|...
T Consensus 2 GVsG~-GKStvg~~lA~~lg~~ 22 (161)
T COG3265 2 GVSGS-GKSTVGSALAERLGAK 22 (161)
T ss_pred CCCcc-CHHHHHHHHHHHcCCc
Confidence 67775 9999999999988643
No 224
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=55.74 E-value=13 Score=32.30 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=20.6
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
..|+||| -.||||++.++...+ |..+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~ 29 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPI 29 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeE
Confidence 4799999 579999999988654 6554
No 225
>PRK06547 hypothetical protein; Provisional
Probab=55.72 E-value=20 Score=30.57 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=20.4
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
....+|+|+|. .||||++..|+..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999985 57999999998875
No 226
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=55.25 E-value=14 Score=32.45 Aligned_cols=26 Identities=42% Similarity=0.653 Sum_probs=19.9
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
..+||||| -.||||.+.++.. .|..+
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~----~g~~v 32 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE----MGCEL 32 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 35799999 4789999988875 46544
No 227
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=54.95 E-value=9.5 Score=37.61 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=28.1
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++.-+-|=||| |||-|-..|+.-|+++|..|++
T Consensus 20 RHGLIaGATGT-GKTvTLqvlAE~fS~~GVPVfl 52 (502)
T PF05872_consen 20 RHGLIAGATGT-GKTVTLQVLAEQFSDAGVPVFL 52 (502)
T ss_pred ccceeeccCCC-CceehHHHHHHHhhhcCCcEEE
Confidence 34557778887 9999999999999999999864
No 228
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=54.91 E-value=9.9 Score=32.53 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=18.6
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~ 66 (377)
++|-+.| |.||||++..|...|.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~ 26 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP 26 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 4677777 7899999999988775
No 229
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=54.67 E-value=20 Score=29.58 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=21.9
Q ss_pred EEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
|.|+| -.||||.+..|...|...|.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~ 30 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPV 30 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 56666 5699999999999998777654
No 230
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=54.22 E-value=13 Score=29.17 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=15.9
Q ss_pred EEEeCC--CChHhHHHHHHHHH
Q 017087 46 LAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL 65 (377)
|.|+|. .||||++..|..-+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 455553 59999999999987
No 231
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=54.05 E-value=17 Score=33.13 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=25.2
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+.|-||| +-||+-|++-|..+|+..|+++..
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~ 36 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTM 36 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeee
Confidence 5678888 579999999999999999999854
No 232
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=53.92 E-value=13 Score=33.34 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=26.4
Q ss_pred EEEEe--CCCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 45 ~I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
.|+|= |-=|||||++=+++.|...|+++...|
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vG 36 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVG 36 (278)
T ss_pred eEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEc
Confidence 45554 467999999999999999999987666
No 233
>PRK05541 adenylylsulfate kinase; Provisional
Probab=53.38 E-value=28 Score=29.37 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=24.8
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
+..+|.++| -.||||.+..|..-|...+..+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~ 38 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNV 38 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 456888999 4689999999999998766543
No 234
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=53.26 E-value=18 Score=36.60 Aligned_cols=31 Identities=32% Similarity=0.333 Sum_probs=27.8
Q ss_pred CCcEEEEeC------CCChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTG------TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
+.++|.||. --|||||+.=|++.|.+.|.++
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~ 89 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV 89 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce
Confidence 468999999 4499999999999999999976
No 235
>PRK04040 adenylate kinase; Provisional
Probab=53.21 E-value=17 Score=31.40 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=22.2
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCCee
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
++|+|||. .||||.+..+.+-|. .+.++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK-EDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEE
Confidence 57889984 689999999999885 245543
No 236
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=53.11 E-value=11 Score=32.93 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=15.2
Q ss_pred EEEEeCC--CChHhHHHHHHH
Q 017087 45 ILAVTGT--NGKSTVVTFVGQ 63 (377)
Q Consensus 45 ~I~VTGT--nGKTTT~~~l~~ 63 (377)
+|+|||. .||||.+.++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 4899995 589999987764
No 237
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=52.71 E-value=20 Score=38.59 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=29.3
Q ss_pred CCCcEEEEeCCC---ChHhHHHHHHHHHHhCCCCee
Q 017087 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 41 ~~~~~I~VTGTn---GKTTT~~~l~~iL~~~g~~~~ 73 (377)
-+.+.+-||||| |||-++..|.+.++..|.++.
T Consensus 25 ~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~ 60 (817)
T PLN02974 25 LSCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVL 60 (817)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceE
Confidence 467899999997 999999999999999988653
No 238
>PRK01184 hypothetical protein; Provisional
Probab=51.90 E-value=20 Score=30.47 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=19.5
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
++|++|| -.||||.+. +++..|..+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~----~~~~~g~~~i 29 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK----IAREMGIPVV 29 (184)
T ss_pred cEEEEECCCCCCHHHHHH----HHHHcCCcEE
Confidence 5899999 578999765 4677787664
No 239
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=51.87 E-value=19 Score=30.96 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=23.3
Q ss_pred HHHHhhCCCCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 33 DFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 33 ~~~~~~~~~~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+++.... +....++|+|.+ ||||+...|...+.
T Consensus 16 ~~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 16 AYLWLAV-EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3444444 456789999954 89999888777665
No 240
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=51.86 E-value=22 Score=30.22 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=21.8
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
|++-||| -.||||+-.-+-. ....|.++++.-+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~n 35 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVN 35 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEEC
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEc
Confidence 5788999 7899998555444 4567888765443
No 241
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=51.81 E-value=20 Score=34.19 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCcEEEEeCCC-ChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTGTN-GKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTGTn-GKTTT~~~l~~iL~~~g~~~ 72 (377)
..+++.|-+|+ ||||.+.||-+.--..|+++
T Consensus 103 GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 103 GPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 44455555566 99999999887776678875
No 242
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.38 E-value=19 Score=34.74 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=26.9
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeee
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
..||-+.| -.||||||.=+++.++..|+++.+.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lv 135 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALV 135 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEE
Confidence 34666666 3589999999999999999998653
No 243
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=51.28 E-value=22 Score=35.12 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=24.3
Q ss_pred EEEEeCC---CChHhHHHHHHHHHHhCCCCee
Q 017087 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 45 ~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
.|-|||| .|||+++..|.+.|++.|.++.
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~ 34 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQ 34 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeE
Confidence 4566665 6999999999999999998764
No 244
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=51.24 E-value=24 Score=31.87 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=22.1
Q ss_pred EEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
|.++| ..||||.+..|+.-|...|.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~ 31 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVI 31 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceE
Confidence 45566 57999999999999987776553
No 245
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=51.17 E-value=12 Score=32.05 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=17.0
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 017087 45 ILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTGT--nGKTTT~~~l~~iL 65 (377)
+|+|||+ .||||.+.++....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~ 23 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY 23 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 4899995 78999999887754
No 246
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=51.06 E-value=25 Score=33.30 Aligned_cols=106 Identities=14% Similarity=0.109 Sum_probs=54.8
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhhc-c-cCCCCCCCccEEEEEeCccc-ccc----C
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-I-ALPSSKPKFQVAVVEVSSYQ-MEI----P 114 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~-~~~~~~~~~~~~ViE~~~~~-l~~----~ 114 (377)
+++-+|| -.||||+++-++..|.+.|.++.+..+-+..-....+.. + ..+. +-....-++|.+.-. ++. .
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~-~I~~nL~a~eiD~~~~l~ey~~~v 81 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPR-KVGPNLDALELDPEKALEEYWDEV 81 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchh-hcCCCCceeeecHHHHHHHHHHHH
Confidence 4556665 789999999999999999987766554332211111100 0 0000 001233577777532 110 0
Q ss_pred C--ccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcc
Q 017087 115 N--KYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151 (377)
Q Consensus 115 ~--~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~ 151 (377)
- ..-.+.-..+-++..|++...+.+++++ +...|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~-~l~~i~e 119 (322)
T COG0003 82 KDYLARLLRTRGLGGIYADELATLPGIDEAL-ALLKILE 119 (322)
T ss_pred HHHHHhhccccccchhHHHHHhhCCCHHHHH-HHHHHHH
Confidence 0 0001223333566777777777777764 3333433
No 247
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=51.01 E-value=79 Score=25.90 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHhccc---CCcEEEEecCCCCCCCChHHHHHHHHhCCCCCcccccC----CHHHHHHHHHHhcCCCCEE
Q 017087 276 KATNLEATCTGLMDLK---GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVA----NMKDAVNHARRMATNGDAI 348 (377)
Q Consensus 276 ~a~np~s~~~al~~~~---~~r~i~v~G~~~~~g~~~~~i~~~l~~~g~~~~~~~~~----~~~~ai~~a~~~~~~gdiv 348 (377)
.+..|+++...++... .++.++|+|..... .+.+...|.+.|. .+..+. |.+++++. -|+|
T Consensus 8 ~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~v---G~pla~lL~~~ga--tV~~~~~~t~~l~~~v~~-------ADIV 75 (140)
T cd05212 8 VSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIV---GAPLQCLLQRDGA--TVYSCDWKTIQLQSKVHD-------ADVV 75 (140)
T ss_pred cccHHHHHHHHHHHcCCCCCCCEEEEECCCchH---HHHHHHHHHHCCC--EEEEeCCCCcCHHHHHhh-------CCEE
Confidence 3668999999888763 46788888864433 3445555554443 344444 55655443 3766
Q ss_pred EEcCCCc
Q 017087 349 VLSPGCA 355 (377)
Q Consensus 349 li~~g~~ 355 (377)
+...|..
T Consensus 76 vsAtg~~ 82 (140)
T cd05212 76 VVGSPKP 82 (140)
T ss_pred EEecCCC
Confidence 6654443
No 248
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=50.56 E-value=28 Score=37.11 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=29.3
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeee
Q 017087 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 41 ~~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+..++|+||++ .|||||+.-|+..|...|.++.+.
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlI 581 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLI 581 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence 35578999865 689999999999999999988654
No 249
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=50.53 E-value=18 Score=31.91 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.0
Q ss_pred eCCCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 49 TGTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
.|-.||||++.-++..+.+.|+++.+..
T Consensus 7 ~~g~Gkt~~~~~la~~~a~~g~~~~l~~ 34 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEGKKVLLVS 34 (217)
T ss_pred CCCchHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3457999999999999999998875443
No 250
>PRK06761 hypothetical protein; Provisional
Probab=50.41 E-value=14 Score=34.19 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=24.6
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
++|.|+| -.||||++..+..-|...|..+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 5788888 5799999999999998777665
No 251
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=50.38 E-value=16 Score=33.74 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=19.6
Q ss_pred CCCcEEEEeCCCChHhHH-HHHHHHHHhCCCC
Q 017087 41 RSIKILAVTGTNGKSTVV-TFVGQMLNHLGIE 71 (377)
Q Consensus 41 ~~~~~I~VTGTnGKTTT~-~~l~~iL~~~g~~ 71 (377)
....|.|.+|| |||||. .-+.++|...+..
T Consensus 14 ~~~lV~a~AGS-GKT~~l~~ri~~ll~~~~~~ 44 (315)
T PF00580_consen 14 GPLLVNAGAGS-GKTTTLLERIAYLLYEGGVP 44 (315)
T ss_dssp SEEEEEE-TTS-SHHHHHHHHHHHHHHTSSST
T ss_pred CCEEEEeCCCC-CchHHHHHHHHHhhccccCC
Confidence 45568888886 999976 4456667666443
No 252
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=49.91 E-value=18 Score=30.81 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.8
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHH
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
.+++.||| -.||||++......|
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 57888888 468999999999998
No 253
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=49.66 E-value=18 Score=32.93 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.0
Q ss_pred CCCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 50 GTnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
|-.||||++.-++..+.+.|+++.+...
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd~ 36 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVST 36 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEeC
Confidence 4679999999999999999998865543
No 254
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=49.54 E-value=15 Score=35.80 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=17.5
Q ss_pred cEEEEeC--CCChHhHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQ 63 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~ 63 (377)
..|+||| -.||||++.+|+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~ 23 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE 23 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999 6899999999876
No 255
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=49.46 E-value=29 Score=30.12 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=24.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
.++..|+|- .||||+...+...+...|.++...+
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 345666664 4699999999999999998875444
No 256
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=49.46 E-value=24 Score=29.85 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCee
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
+.++|.|.|. .||||.+..|+.-+ |..+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~---g~~~~ 32 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY---GFTHL 32 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---CCcEE
Confidence 4578888884 58999999998765 55543
No 257
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=49.41 E-value=48 Score=30.65 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=34.7
Q ss_pred CHHHHHHHHhcccCCcEEEEecCCCCCCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEc
Q 017087 279 NLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLS 351 (377)
Q Consensus 279 np~s~~~al~~~~~~r~i~v~G~~~~~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~ 351 (377)
+++.+.++++.+..-+.|+++| .+--|.-+..+...+...|. ++....|..... .....+.++|++++.
T Consensus 116 ~~~~l~~av~~L~~A~rI~~~G-~g~S~~vA~~~~~~l~~ig~--~~~~~~d~~~~~-~~~~~~~~~Dv~i~i 184 (281)
T COG1737 116 DEEALERAVELLAKARRIYFFG-LGSSGLVASDLAYKLMRIGL--NVVALSDTHGQL-MQLALLTPGDVVIAI 184 (281)
T ss_pred CHHHHHHHHHHHHcCCeEEEEE-echhHHHHHHHHHHHHHcCC--ceeEecchHHHH-HHHHhCCCCCEEEEE
Confidence 3444444445554556677777 33333334455555544443 344445544444 344556666766653
No 258
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=48.97 E-value=37 Score=31.79 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=23.5
Q ss_pred HHHHHhhCCCCCcEEEEeC--CCChHhHHHHHHHHHHh
Q 017087 32 LDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNH 67 (377)
Q Consensus 32 ~~~~~~~~~~~~~~I~VTG--TnGKTTT~~~l~~iL~~ 67 (377)
.+++.... +....|.|+| ..||||+...|...+..
T Consensus 122 ~~~L~~~v-~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 122 RDVLREAV-LARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 44555555 3445777888 46899998877666654
No 259
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=48.94 E-value=22 Score=31.37 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhC
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~ 68 (377)
++..+.|+-|-| ||||+-+||+.+|.-.
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P~ 55 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIPD 55 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccCC
Confidence 456799999977 6999999999999754
No 260
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=47.31 E-value=27 Score=33.73 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=28.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+..+|+|+| -.||||....|...|+.. +++++.-
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik 39 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYK 39 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEE
Confidence 456999999 569999999999999988 7876543
No 261
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=46.95 E-value=26 Score=36.98 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=24.5
Q ss_pred EEEEeCC---CChHhHHHHHHHHHHhCCCCeee
Q 017087 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 45 ~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
.|-|+|| .|||+++.-|.+.|++.|.+++.
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~ 36 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGF 36 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 3455543 79999999999999999998864
No 262
>PRK06762 hypothetical protein; Provisional
Probab=46.92 E-value=22 Score=29.68 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.2
Q ss_pred cEEEEeC--CCChHhHHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
++|.|+| -.||||.+..|..-|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999 579999999998877
No 263
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=46.62 E-value=19 Score=31.75 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.9
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHH
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
..+|+|.|+ .||||.+.+|+.=|.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 568999995 789999999998885
No 264
>PF12846 AAA_10: AAA-like domain
Probab=46.45 E-value=21 Score=32.70 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=20.3
Q ss_pred cEEEEeCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
-++|-||| ||||+...+-.-+...|..+.+
T Consensus 5 ~i~G~tGs-GKT~~~~~l~~~~~~~g~~~~i 34 (304)
T PF12846_consen 5 LILGKTGS-GKTTLLKNLLEQLIRRGPRVVI 34 (304)
T ss_pred EEECCCCC-cHHHHHHHHHHHHHHcCCCEEE
Confidence 35555554 8999888777766677766543
No 265
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=46.06 E-value=35 Score=30.88 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=25.8
Q ss_pred EEEEeC----CCChHhHHHHHHHHHHhCCCCeee
Q 017087 45 ILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 45 ~I~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
-|-||| +-||+.|++-+..+|++.|+++..
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~ 35 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTA 35 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEE
Confidence 466777 569999999999999999999854
No 266
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=45.83 E-value=28 Score=35.19 Aligned_cols=58 Identities=24% Similarity=0.204 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCce-----------eeHHHHHHhhC-CCCCcEEEEeCCC------ChHhHHHHHHHHHHhCCCCee
Q 017087 16 TGLACLLQSGKRV-----------MSELDFAAQVI-PRSIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 16 p~~~~a~~~~~~~-----------l~~~~~~~~~~-~~~~~~I~VTGTn------GKTTT~~~l~~iL~~~g~~~~ 73 (377)
|--.-|.+.|++- -=.++.+.++- +.+.+.|.||+.+ |||||+-=|.+.|...|+++.
T Consensus 15 ~i~~ia~~~gl~~~~~~~yG~~kaKi~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~ 90 (557)
T PF01268_consen 15 PIEEIAEKLGLPEDDLEPYGRYKAKIDLSVLERLKDKPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAI 90 (557)
T ss_dssp -HHHHHHCTT--GGGEEEETTTEEEE-TCHHHHTTTS---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EE
T ss_pred CHHHHHHHcCCCHHHHHhcCCCCcEeChHHHhhccccCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceE
Confidence 3344566667652 11233444433 2467899999976 999999999999999999863
No 267
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.48 E-value=35 Score=33.63 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=25.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH-HhCCCCeeeec
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQML-NHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL-~~~g~~~~~~g 76 (377)
..+|.++|. .|||||+.-|+.-+ ...|.++.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit 259 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT 259 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec
Confidence 357888884 58999999999754 56787776544
No 268
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=45.31 E-value=21 Score=34.86 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=19.5
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHH
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
..+.|+|+| +.||||.+..|+..+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457899998 789999998887654
No 269
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=45.18 E-value=32 Score=34.23 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=26.9
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+-|-||| |=||+.|++-|..+|++.|+++.+
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~ 36 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTI 36 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEE
Confidence 4577777 789999999999999999999854
No 270
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.11 E-value=31 Score=36.60 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=25.0
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH-hCC-CCeeeec
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~-~~g-~~~~~~g 76 (377)
..+|++.|.| |||||...|+..+. ..| .++.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit 222 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT 222 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec
Confidence 3578888865 79999999998884 556 4665544
No 271
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=44.91 E-value=19 Score=30.71 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.4
Q ss_pred CChHhHHHHHHHHHHhCCCCe
Q 017087 52 NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 52 nGKTTT~~~l~~iL~~~g~~~ 72 (377)
.||||.+.+|..-|+..|.++
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~ 27 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKV 27 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCcc
Confidence 599999999999999999874
No 272
>PRK00300 gmk guanylate kinase; Provisional
Probab=44.52 E-value=22 Score=30.74 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
++..+|+|.|.+ ||||.+.+|...+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356789999975 89999999988764
No 273
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=44.22 E-value=29 Score=35.17 Aligned_cols=32 Identities=31% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCcEEEEeCCC------ChHhHHHHHHHHHHhCCCCee
Q 017087 42 SIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTGTn------GKTTT~~~l~~iL~~~g~~~~ 73 (377)
+.+.|.||+.+ |||||+-=|.+.|.+.|+++.
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~ 99 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVS 99 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceE
Confidence 56899999975 999999999999999999863
No 274
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=44.08 E-value=24 Score=30.61 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=18.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHH
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQM 64 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~i 64 (377)
..+++|||.| ||||...+|...
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHH
Confidence 3689999987 799999999843
No 275
>PRK06217 hypothetical protein; Validated
Probab=43.67 E-value=24 Score=30.14 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.1
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 017087 45 ILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL 65 (377)
.|.|+| -.||||.+..|+..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 467776 469999999999887
No 276
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=43.61 E-value=26 Score=29.95 Aligned_cols=14 Identities=36% Similarity=0.588 Sum_probs=11.7
Q ss_pred hcCCCCCCeeeEEe
Q 017087 250 EILRTPPHRMQIVH 263 (377)
Q Consensus 250 ~~~~~~~gR~e~~~ 263 (377)
.+++|++||+.++=
T Consensus 61 ~k~RPL~gRiNiVL 74 (190)
T KOG1324|consen 61 EKFRPLPGRINVVL 74 (190)
T ss_pred cccCCCCCceEEEE
Confidence 46789999999884
No 277
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=42.98 E-value=43 Score=27.21 Aligned_cols=30 Identities=27% Similarity=0.239 Sum_probs=22.5
Q ss_pred HHhhCCCCCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 35 AAQVIPRSIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 35 ~~~~~~~~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
+++.+ +...+|.+.|. .||||.+..+...|
T Consensus 15 l~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 15 FAKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44444 45679999995 68999888888776
No 278
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=42.78 E-value=35 Score=30.12 Aligned_cols=29 Identities=38% Similarity=0.585 Sum_probs=21.1
Q ss_pred cEEEEeCCC--ChHhHHHHHH--HHHHhCCCCe
Q 017087 44 KILAVTGTN--GKSTVVTFVG--QMLNHLGIEA 72 (377)
Q Consensus 44 ~~I~VTGTn--GKTTT~~~l~--~iL~~~g~~~ 72 (377)
+.+.|||.| ||||.-..+. .+|.+.|..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 789999977 6888777777 4566666543
No 279
>PRK00131 aroK shikimate kinase; Reviewed
Probab=42.51 E-value=33 Score=28.51 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.1
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHH
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
..+.|.++| ..||||++..|+.-|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 345788888 679999999999988
No 280
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=42.26 E-value=78 Score=28.58 Aligned_cols=56 Identities=9% Similarity=0.002 Sum_probs=40.5
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC-------CCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcc
Q 017087 233 VLGLDIGVDVEALNSTIEILRTP-------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290 (377)
Q Consensus 233 a~~~~lgi~~~~i~~~l~~~~~~-------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~ 290 (377)
.-|...++|.+.|.++|+.-.+. +-++|..+ .+|+.||.++.-.|..-+..-++.+
T Consensus 54 ~~Ak~~~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~g--P~GvaiiVe~lTDN~nRt~~~ir~~ 116 (238)
T TIGR01033 54 EKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGYA--PGGVAIIVECLTDNKNRTASEVRSA 116 (238)
T ss_pred HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEEc--CCceEEEEEEecCCHHhHHHHHHHH
Confidence 77889999999999999988753 22445543 5788888888666766666555543
No 281
>PLN02318 phosphoribulokinase/uridine kinase
Probab=41.65 E-value=27 Score=35.99 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.2
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHH
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~ 66 (377)
...+|+|+| -.||||.+..|...+.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 457999999 4589999999998873
No 282
>PRK11914 diacylglycerol kinase; Reviewed
Probab=40.88 E-value=62 Score=30.17 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=35.3
Q ss_pred CcEEEEecCCCCCCC---ChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccC
Q 017087 293 HKCVILLGGQAKFGY---SGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRN 362 (377)
Q Consensus 293 ~r~i~v~G~~~~~g~---~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~ 362 (377)
+|+.+|+-..+-.|. ..+++.+.+++.|+...+.......++.+.+.+.+..+ |+|++..|.|.+.++-+
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~ 82 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQ 82 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhH
Confidence 455666654443333 23345556665554323333333455555554443333 67777677776655443
No 283
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=40.84 E-value=32 Score=34.50 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.7
Q ss_pred CCcEEEEeCCC---ChHhHHHHHHHHHHhC
Q 017087 42 SIKILAVTGTN---GKSTVVTFVGQMLNHL 68 (377)
Q Consensus 42 ~~~~I~VTGTn---GKTTT~~~l~~iL~~~ 68 (377)
+++.|-||||+ |||+++..|.+.|++.
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 56789999985 9999999999999975
No 284
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=40.33 E-value=35 Score=28.83 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=19.3
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~ 66 (377)
++|.++| ..||||.+..|...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5788888 6799999999988764
No 285
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=39.55 E-value=54 Score=30.03 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=17.6
Q ss_pred HHHhhCCCCCcEEEEeCC--CChHhHHHHH
Q 017087 34 FAAQVIPRSIKILAVTGT--NGKSTVVTFV 61 (377)
Q Consensus 34 ~~~~~~~~~~~~I~VTGT--nGKTTT~~~l 61 (377)
.+.+...+..-.|.|+|. .|||||...+
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~al 100 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYSA 100 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHH
Confidence 344444234457899994 5898888644
No 286
>COG3910 Predicted ATPase [General function prediction only]
Probab=39.51 E-value=25 Score=30.64 Aligned_cols=49 Identities=20% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCC--ChHhHHHHHHHH
Q 017087 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQM 64 (377)
Q Consensus 13 ~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTn--GKTTT~~~l~~i 64 (377)
+++|+......-++|+++.++. ++- -+.|+--|||-| ||+|..+-|+..
T Consensus 10 ~ekve~~~eYp~slPa~r~l~~--~Le-F~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 10 LEKVESFEEYPFSLPAFRHLEE--RLE-FRAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred hhcccchhhCcccchHHHhhhh--hcc-ccCceEEEEcCCCccHHHHHHHHHhh
Confidence 6788888888888999888775 221 356788899977 587766665543
No 287
>PLN02759 Formate--tetrahydrofolate ligase
Probab=39.46 E-value=45 Score=34.16 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=27.9
Q ss_pred CCcEEEEeCCC------ChHhHHHHHHHHHHh-CCCCee
Q 017087 42 SIKILAVTGTN------GKSTVVTFVGQMLNH-LGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTGTn------GKTTT~~~l~~iL~~-~g~~~~ 73 (377)
+.+.|.||+.+ |||||+-=|.+.|.+ .|+++.
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~ 106 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVV 106 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeE
Confidence 56899999965 999999999999997 898763
No 288
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.17 E-value=68 Score=32.69 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=25.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhC--CCCeeeec
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL--GIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~--g~~~~~~g 76 (377)
...+|+++| -.|||||...|...+... +.++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 456888887 568999999998876554 45565444
No 289
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=38.91 E-value=44 Score=28.96 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=15.2
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHH
Q 017087 45 ILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 45 ~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
.|.|+|.. |||||...+..-+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 57888854 69999886544443
No 290
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=38.77 E-value=50 Score=32.60 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=26.1
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHH--hCCCCeeeecc
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLN--HLGIEAFVGGN 77 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~--~~g~~~~~~g~ 77 (377)
..+|.+.|. .|||||+..|+..+. ..|.++++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 357778774 589999999998886 45777765543
No 291
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=38.66 E-value=79 Score=32.57 Aligned_cols=55 Identities=27% Similarity=0.260 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCce---eeHHHHHH---hhCC---CCCcEEEEeC--CCChHhHHHHHHHHHHh-CCC
Q 017087 16 TGLACLLQSGKRV---MSELDFAA---QVIP---RSIKILAVTG--TNGKSTVVTFVGQMLNH-LGI 70 (377)
Q Consensus 16 p~~~~a~~~~~~~---l~~~~~~~---~~~~---~~~~~I~VTG--TnGKTTT~~~l~~iL~~-~g~ 70 (377)
-+++.....|... +++++.+. +.++ +...+|.+|| -.||||.+..|+..|.. .|.
T Consensus 356 t~ir~~l~~G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~ 422 (568)
T PRK05537 356 TELRRRLREGLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGR 422 (568)
T ss_pred HHHHHHHHCCCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCc
Confidence 3456667777654 67877654 3332 3445899999 67999999999999976 444
No 292
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=38.50 E-value=38 Score=27.66 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=27.8
Q ss_pred CCCcEEEEeC-CCChHhHHHHHHHHHHhCCCCee
Q 017087 41 RSIKILAVTG-TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 41 ~~~~~I~VTG-TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
++.++|+|-| |.=++.+++.+..-|+++|+++.
T Consensus 14 ~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi 47 (140)
T COG1832 14 KSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI 47 (140)
T ss_pred HhCceEEEEecCCCCCccHHHHHHHHHHCCCEEE
Confidence 4678899888 66678889999999999999873
No 293
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=38.26 E-value=49 Score=28.68 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=23.9
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCC--CCeeeecc
Q 017087 45 ILAVTGTNGKSTVVTFVGQMLNHLG--IEAFVGGN 77 (377)
Q Consensus 45 ~I~VTGTnGKTTT~~~l~~iL~~~g--~~~~~~g~ 77 (377)
++..|| |||+-||+-+.-+|++.| +++++...
T Consensus 31 i~V~TG-~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 31 IIVFTG-NGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred EEEEec-CCCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 566666 799999999999999875 46654443
No 294
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=37.53 E-value=70 Score=29.80 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=25.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeeccccch
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g~~g~~ 81 (377)
++..+|.|+|++ ||||....+...|........+.|-++..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~ 144 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTV 144 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcH
Confidence 567899999976 68887776766665443222334444443
No 295
>PRK04182 cytidylate kinase; Provisional
Probab=37.18 E-value=33 Score=28.76 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=17.7
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 017087 45 ILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL 65 (377)
+|.|+| -.||||.+..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 588888 468999999998776
No 296
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=37.03 E-value=50 Score=33.42 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=27.1
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+-|-||| +-||+.|++-|..+|++.|+++.+
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~ 36 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTI 36 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEE
Confidence 5678888 569999999999999999999854
No 297
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=37.01 E-value=47 Score=28.74 Aligned_cols=27 Identities=30% Similarity=0.711 Sum_probs=20.1
Q ss_pred cEEEEeCCC--ChHhHHHHHHH--HHHhCCC
Q 017087 44 KILAVTGTN--GKSTVVTFVGQ--MLNHLGI 70 (377)
Q Consensus 44 ~~I~VTGTn--GKTTT~~~l~~--iL~~~g~ 70 (377)
+++++||-| ||||...+|.. ++.+.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~ 59 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGL 59 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHcCC
Confidence 689999976 79999888772 3445553
No 298
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=36.93 E-value=45 Score=29.86 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=26.1
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCC
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~ 71 (377)
++.|.||| ..||||-+.-|...|++.|.+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 46789999 899999999999999999965
No 299
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=36.84 E-value=35 Score=28.78 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHh
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNH 67 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~ 67 (377)
.+|.|+|. .||||+...|...|..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46888884 5899999998887743
No 300
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=36.84 E-value=38 Score=32.33 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=20.9
Q ss_pred HHHhhCCCCCcEEEEeCCCC--hHhHHHHHHHHH
Q 017087 34 FAAQVIPRSIKILAVTGTNG--KSTVVTFVGQML 65 (377)
Q Consensus 34 ~~~~~~~~~~~~I~VTGTnG--KTTT~~~l~~iL 65 (377)
.+.+++.+....|.|+|..| ||||...+..-+
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34444423456899999655 999997665544
No 301
>PRK04296 thymidine kinase; Provisional
Probab=36.17 E-value=57 Score=28.09 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=19.1
Q ss_pred cEEEEeCCCChHhHHHHHHHH--HHhCCCCeeee
Q 017087 44 KILAVTGTNGKSTVVTFVGQM--LNHLGIEAFVG 75 (377)
Q Consensus 44 ~~I~VTGTnGKTTT~~~l~~i--L~~~g~~~~~~ 75 (377)
.++.|||..|++-|+.++..+ +..+|.++.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 467899985544444444444 44567776543
No 302
>PRK13975 thymidylate kinase; Provisional
Probab=36.12 E-value=39 Score=28.91 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.3
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHh
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNH 67 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~ 67 (377)
..|.|.| -.||||.+..|+..|..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788888 46899999999999964
No 303
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=36.12 E-value=62 Score=25.52 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=28.6
Q ss_pred EEEEecCCCCCCCChHHHHHHHHhCCCCCcccccCCHHHHHHH
Q 017087 295 CVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNH 337 (377)
Q Consensus 295 ~i~v~G~~~~~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~ 337 (377)
.++|+|+.+.. ..+..+.+-+.+..-+..+..+++.++|+++
T Consensus 71 klAivGD~s~~-~~S~~l~dfi~EsN~G~~~~F~~~~~eA~~~ 112 (113)
T PF13788_consen 71 KLAIVGDFSAY-ATSKSLRDFIYESNRGNHFFFVPDEEEAIAW 112 (113)
T ss_pred eEEEEEccccc-ccchhHHHHHHHhcCCCeEEEECCHHHHHhh
Confidence 46777777766 6677777766654333456677888888765
No 304
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=35.95 E-value=25 Score=32.82 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccChHHH
Q 017087 328 VANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNFEHR 366 (377)
Q Consensus 328 ~~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~~~~r 366 (377)
..|..||++.+....++| |+|.|+||-.-++.+++..+|
T Consensus 221 p~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~ 260 (320)
T cd04824 221 PGARGLALRAVERDVSEGADMIMVKPGTPYLDIVREAKDK 260 (320)
T ss_pred CcCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHHHh
Confidence 367889999887776666 899999998877777665443
No 305
>PRK05380 pyrG CTP synthetase; Validated
Probab=35.46 E-value=54 Score=33.26 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=27.9
Q ss_pred CcEEEEeC----CCChHhHHHHHHHHHHhCCCCeee
Q 017087 43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 43 ~~~I~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
.+-|-||| +=||+.|++-|..+|++.|+++.+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~ 37 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTI 37 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEE
Confidence 35688888 679999999999999999999854
No 306
>PRK07261 topology modulation protein; Provisional
Probab=35.37 E-value=41 Score=28.41 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=14.7
Q ss_pred EEEeCC--CChHhHHHHHHHHH
Q 017087 46 LAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL 65 (377)
|.|.|. .||||.+..|...+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 566664 48999999887654
No 307
>PLN02327 CTP synthase
Probab=35.36 E-value=54 Score=33.42 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=27.1
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+-|-||| +-||+.|++-|..+|++.|+++.+
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~ 36 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTS 36 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceee
Confidence 5678888 569999999999999999999854
No 308
>PRK14528 adenylate kinase; Provisional
Probab=35.28 E-value=60 Score=27.80 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=20.0
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCCee
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
+.|.|+|. .||||.+.+|+.-+ |..+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~---~~~~i 30 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL---SIPQI 30 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCCee
Confidence 45777885 69999999998766 55543
No 309
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=35.10 E-value=50 Score=30.62 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=22.5
Q ss_pred hhCCCCCcEEEEeC--CCChHhHHHHHHHHHH
Q 017087 37 QVIPRSIKILAVTG--TNGKSTVVTFVGQMLN 66 (377)
Q Consensus 37 ~~~~~~~~~I~VTG--TnGKTTT~~~l~~iL~ 66 (377)
+.+.....++++.| |.||||+..+..++.-
T Consensus 187 ~~l~~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G 218 (286)
T PF06048_consen 187 SLLGVEGFGFHLYGQSSSGKTTALQLAASVWG 218 (286)
T ss_pred HHhCCCceEEEEEeCCCCCHHHHHHHhhhhCc
Confidence 33434556899999 7899999998887763
No 310
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=34.82 E-value=41 Score=31.12 Aligned_cols=64 Identities=27% Similarity=0.202 Sum_probs=36.6
Q ss_pred CCcHHHHHHHHcCCceeeHHHHHHhhCC---CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 13 LKATGLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 13 ~~~p~~~~a~~~~~~~l~~~~~~~~~~~---~~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
-.+|.+.-+++.-.+--.+.-.+-+-.+ .+..++++-|-| |||||-.||.-++...+=++-+.|
T Consensus 17 ~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G 85 (325)
T COG4586 17 IKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85 (325)
T ss_pred eeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence 3456666655543333222211222111 134689999987 699999999988876554443333
No 311
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=34.82 E-value=37 Score=27.03 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=19.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|+|.| ||||...+|...+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 45689999988 79888877765554
No 312
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=34.74 E-value=23 Score=29.93 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.6
Q ss_pred CChHhHHHHHHHHHHhCC
Q 017087 52 NGKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 52 nGKTTT~~~l~~iL~~~g 69 (377)
+||||++..|.+++-+.|
T Consensus 10 CGKTTva~aL~~LFg~wg 27 (168)
T PF08303_consen 10 CGKTTVALALSNLFGEWG 27 (168)
T ss_pred cCHHHHHHHHHHHcCCCC
Confidence 699999999999996544
No 313
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=34.57 E-value=44 Score=28.01 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|.| ||||...+|.-.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55799999986 89999998887664
No 314
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=34.54 E-value=38 Score=30.22 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
+|+||| -.||||++.++ +..|..+
T Consensus 2 iI~i~G~~gsGKstva~~~----~~~g~~~ 27 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFI----IENYNAV 27 (227)
T ss_pred EEEEeCCCCCCHHHHHHHH----HhcCCcE
Confidence 799999 57999998877 4455544
No 315
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=34.35 E-value=31 Score=32.12 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~ 67 (377)
+..++|+-|-| ||||+-.+|..+++.
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 45799999998 699999999887764
No 316
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.00 E-value=74 Score=29.28 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=29.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeeccc
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGNL 78 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~~ 78 (377)
+...|++.| ..||||+...+...+...+.+++.....
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D 112 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 112 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 346899997 5689999999999998778777655543
No 317
>PRK13947 shikimate kinase; Provisional
Probab=33.95 E-value=47 Score=27.68 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=17.3
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 017087 45 ILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL 65 (377)
.|.++| -.||||++.+|+..|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 466666 569999999999888
No 318
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=33.81 E-value=27 Score=32.78 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=28.1
Q ss_pred cCCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccCh
Q 017087 328 VANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNF 363 (377)
Q Consensus 328 ~~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~~ 363 (377)
..|..||++.+....++| |+|+|+||-..++.+++.
T Consensus 226 p~N~~EAlre~~~D~~EGAD~lMVKPal~YLDIi~~~ 262 (324)
T PF00490_consen 226 PANRREALREAELDIEEGADILMVKPALPYLDIIRRV 262 (324)
T ss_dssp TT-HHHHHHHHHHHHHTT-SEEEEESSGGGHHHHHHH
T ss_pred CccHHHHHHHhhhhHhhCCCEEEeecchhHHHHHHHH
Confidence 358999999988877777 899999998877766653
No 319
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=33.51 E-value=31 Score=28.60 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=14.9
Q ss_pred EEeCC--CChHhHHHHHHHHH
Q 017087 47 AVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 47 ~VTGT--nGKTTT~~~l~~iL 65 (377)
.++|- .||||.+..|+..|
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 45553 49999999999887
No 320
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=33.36 E-value=52 Score=33.35 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=20.8
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
...+|+|.|. .||||.+.+|+.-|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999995 68999999999888
No 321
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=33.22 E-value=43 Score=29.69 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.8
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHh
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNH 67 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~ 67 (377)
.+|+|-| ..||+|++..|+.-|.-
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~ 30 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGF 30 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCC
Confidence 6899999 68999999999988743
No 322
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=33.17 E-value=34 Score=30.88 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.3
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHH
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQM 64 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~i 64 (377)
..|.|+|.| +.||||+...|...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCC
Confidence 678899999 88999998887753
No 323
>PRK08118 topology modulation protein; Reviewed
Probab=32.99 E-value=51 Score=27.75 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=16.9
Q ss_pred EEEEeC--CCChHhHHHHHHHHHH
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLN 66 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~ 66 (377)
.|.|.| -.||||.+..|+..|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 466666 4689999999998773
No 324
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=32.79 E-value=33 Score=32.17 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...++++.|.| ||||+..+|.-++.
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45689999987 79999999987765
No 325
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=32.73 E-value=44 Score=27.73 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=17.3
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 017087 45 ILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTGT--nGKTTT~~~l~~iL 65 (377)
+|+|+|. .||||++..++.-|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 6889994 68999999988765
No 326
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=32.57 E-value=29 Score=32.56 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccChH
Q 017087 328 VANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNFE 364 (377)
Q Consensus 328 ~~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~~~ 364 (377)
..|..||++.+....++| |+|.|+||-..++.+++..
T Consensus 224 p~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k 261 (323)
T PRK09283 224 PANRREALREVALDIEEGADMVMVKPALPYLDIIRRVK 261 (323)
T ss_pred CCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHH
Confidence 367899999888777777 8999999988777766643
No 327
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=32.40 E-value=31 Score=32.17 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccChH
Q 017087 328 VANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNFE 364 (377)
Q Consensus 328 ~~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~~~ 364 (377)
..|..||++.+....++| |+|.|+||-.-++.+++..
T Consensus 216 pan~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k 253 (314)
T cd00384 216 PANRREALREVELDIEEGADILMVKPALAYLDIIRDVR 253 (314)
T ss_pred CCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHH
Confidence 367889998887777766 8999999988777666643
No 328
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=32.23 E-value=47 Score=29.46 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=24.0
Q ss_pred cEEEEeCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
-|+|.+|| ||+|-|+-+.+=.+..|.++.+
T Consensus 7 lV~GpAgS-GKSTyC~~~~~h~e~~gRs~~v 36 (273)
T KOG1534|consen 7 LVMGPAGS-GKSTYCSSMYEHCETVGRSVHV 36 (273)
T ss_pred EEEccCCC-CcchHHHHHHHHHHhhCceeEE
Confidence 36777775 9999999998888888877644
No 329
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=32.15 E-value=53 Score=33.56 Aligned_cols=32 Identities=41% Similarity=0.483 Sum_probs=27.8
Q ss_pred CCcEEEEeCCC------ChHhHHHHHHHHHH-hCCCCee
Q 017087 42 SIKILAVTGTN------GKSTVVTFVGQMLN-HLGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTGTn------GKTTT~~~l~~iL~-~~g~~~~ 73 (377)
+.+.|.||+.+ |||||+-=|.+.|. ..|+++.
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~ 105 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTF 105 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceE
Confidence 56899999975 99999999999999 6898863
No 330
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.07 E-value=74 Score=31.36 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=18.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+|++.|.| |||||...|+..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34688888866 7999999998754
No 331
>PRK13974 thymidylate kinase; Provisional
Probab=31.95 E-value=65 Score=28.26 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=22.1
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCC
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGI 70 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~ 70 (377)
.+|++-| -.||||.+.+|...|...|.
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~ 32 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGL 32 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 4677777 46899999999999987764
No 332
>PRK13976 thymidylate kinase; Provisional
Probab=31.89 E-value=79 Score=27.80 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=21.5
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhC-C-CCe
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHL-G-IEA 72 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~-g-~~~ 72 (377)
.|+|-| -.||||.+.+|+..|+.. | .++
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v 33 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNV 33 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcce
Confidence 355555 469999999999999986 5 344
No 333
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=31.67 E-value=32 Score=32.11 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.0
Q ss_pred eCCCChHhHHHHHHHHHHhCC
Q 017087 49 TGTNGKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g 69 (377)
.|.|||||...+|.+++-...
T Consensus 84 ~g~nGKStl~~~l~~l~G~~~ 104 (304)
T TIGR01613 84 NGGNGKSTFQNLLSNLLGDYA 104 (304)
T ss_pred CCCCcHHHHHHHHHHHhChhh
Confidence 579999999999999996543
No 334
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=31.64 E-value=41 Score=29.44 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|-| ||||...+|.-++.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 55799999986 89999998887664
No 335
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.62 E-value=39 Score=28.59 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||...+|..++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55799999987 89999888887665
No 336
>PRK13695 putative NTPase; Provisional
Probab=31.51 E-value=65 Score=27.07 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=21.9
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 45 ~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
.|++||. .||||...++..-|+..|..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 3678875 479999999988888777653
No 337
>PRK12378 hypothetical protein; Provisional
Probab=31.41 E-value=2.1e+02 Score=25.78 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCC------eeeEEeeccCCeEEEEcCCCCCHHHHHHHHhc
Q 017087 233 VLGLDIGVDVEALNSTIEILRTPPH------RMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (377)
Q Consensus 233 a~~~~lgi~~~~i~~~l~~~~~~~g------R~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (377)
.-|...++|.+.|.++|+.-.+..+ ++|.. ..+|+.||.++.-.|..-+..-++.
T Consensus 52 ~~Ak~~nmPkd~IerAIkk~~g~~~~~~~e~~YEgy--gPgGvaiiVe~lTDN~nRt~~~vr~ 112 (235)
T PRK12378 52 ERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGF--GPNGVMVIVECLTDNVNRTVANVRS 112 (235)
T ss_pred HHHHHhCCCHHHHHHHHHhccCCCCCceEEEEEEEE--cCCCcEEEEEECCCCHHHHHHHHHH
Confidence 6788899999999999998765322 34444 3578888888855565555544444
No 338
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=31.31 E-value=31 Score=32.27 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccChH
Q 017087 328 VANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNFE 364 (377)
Q Consensus 328 ~~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~~~ 364 (377)
..|..||++.+....++| |+|.|+||-..++.+++..
T Consensus 225 p~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k 262 (322)
T PRK13384 225 YANGRQALLEALLDEAEGADILMVKPGTPYLDVLSRLR 262 (322)
T ss_pred CCCHHHHHHHHHhhHhhCCCEEEEcCCchHHHHHHHHH
Confidence 367889999888777777 8899999988777666643
No 339
>PRK00110 hypothetical protein; Validated
Probab=30.97 E-value=1.5e+02 Score=26.82 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhhcCCCC-C------CeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhc
Q 017087 227 AVAALSVLGLDIGVDVEALNSTIEILRTP-P------HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (377)
Q Consensus 227 laA~~~a~~~~lgi~~~~i~~~l~~~~~~-~------gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (377)
..|+ .-|...++|.+.|.++|+.-++- . -++|-. ..+|+.+|.++.-.|..-+..-++.
T Consensus 50 r~aI--~~Ak~~nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~--gP~GvaiiVe~lTDN~nRt~~~vR~ 115 (245)
T PRK00110 50 RLAI--DKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEGY--GPGGVAIIVEALTDNRNRTAAEVRH 115 (245)
T ss_pred HHHH--HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEE--cCCCeEEEEEEecCCHHHHHHHHHH
Confidence 3444 77888999999999999988763 1 244444 2578888888855565555444443
No 340
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=30.87 E-value=97 Score=27.87 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhhcCCCC-------CCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcc
Q 017087 227 AVAALSVLGLDIGVDVEALNSTIEILRTP-------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290 (377)
Q Consensus 227 laA~~~a~~~~lgi~~~~i~~~l~~~~~~-------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~ 290 (377)
..|+ .-|...++|.+.|.++|+.-.+. .-++|..+ .+|+.+|.++.-.|..-+..-++.+
T Consensus 46 ~~ai--~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~~~yEg~g--P~Gvaiive~lTDN~nRt~~~ir~~ 112 (234)
T PF01709_consen 46 RSAI--EKAKKANMPKDNIERAIKKASGKSDGANYEEITYEGYG--PGGVAIIVECLTDNKNRTVSDIRSI 112 (234)
T ss_dssp HHHH--HHHHHTT--HHHHHHHHHHCCSTSST---EEEEEEEEE--TTTEEEEEEEEES-HHHHHHHHHHH
T ss_pred HHHH--HHHHHhCCCHHHHHHHHHhcCcCCCCcCceEEEEEEEc--CCCcEEEEEEeCCCHhHHHHHHHHH
Confidence 3444 77889999999999999998763 23566663 5788888888666776666555543
No 341
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=30.85 E-value=79 Score=29.98 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=20.3
Q ss_pred HHHHhhCCCCCcEEEEeC--CCChHhHHHHHHHHH
Q 017087 33 DFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 33 ~~~~~~~~~~~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
+++.... +....|.|+| ..||||+..-|...+
T Consensus 135 ~~L~~~v-~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 135 SVIRSAI-DSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4555555 2344677888 579999886655444
No 342
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.83 E-value=85 Score=29.54 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=22.8
Q ss_pred HHHHhhCCCCCcEEEEeC--CCChHhHH-HHHHHHHHhCC
Q 017087 33 DFAAQVIPRSIKILAVTG--TNGKSTVV-TFVGQMLNHLG 69 (377)
Q Consensus 33 ~~~~~~~~~~~~~I~VTG--TnGKTTT~-~~l~~iL~~~g 69 (377)
..+.++...+.-.|.||| -+|||||- +||.++=+...
T Consensus 115 ~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~ 154 (353)
T COG2805 115 PIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKA 154 (353)
T ss_pred HHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCC
Confidence 445555434455899999 46898875 55555554443
No 343
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=30.40 E-value=54 Score=32.40 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=39.4
Q ss_pred cHHHHHHHHcCCceeeHHHHH------------HhhC-CCCCcEEEEeCCC------ChHhHHHHHHHHHHhCCCCe
Q 017087 15 ATGLACLLQSGKRVMSELDFA------------AQVI-PRSIKILAVTGTN------GKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 15 ~p~~~~a~~~~~~~l~~~~~~------------~~~~-~~~~~~I~VTGTn------GKTTT~~~l~~iL~~~g~~~ 72 (377)
-|.-..|.+.|+.. .+++.. .++- +++.+.|.||+-| |||||+-=|.+.|...|+++
T Consensus 12 k~I~~ia~k~Gl~~-d~lelYG~ykAKi~~~~~~~l~~k~~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~ 87 (554)
T COG2759 12 KPIEEIAEKLGLSA-DDLELYGHYKAKISLEVIKRLKNKPDGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKA 87 (554)
T ss_pred ccHHHHHHHcCCCH-HHhhhccchhhhcCHHHHHhhccCCCceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchh
Confidence 34445677777654 233322 2222 2357899999854 99999999999999999875
No 344
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=30.11 E-value=37 Score=31.77 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccChH
Q 017087 328 VANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNFE 364 (377)
Q Consensus 328 ~~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~~~ 364 (377)
..|..||++.+....++| |+|.|+||-..++.+++..
T Consensus 221 p~n~~eAlre~~~Di~EGAD~lMVKPal~YLDIi~~~k 258 (320)
T cd04823 221 PANSREALREVALDIAEGADMVMVKPGMPYLDIIRRVK 258 (320)
T ss_pred CCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHH
Confidence 367889999888877777 8888999988777766643
No 345
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=30.06 E-value=51 Score=32.83 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=21.0
Q ss_pred CCCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 40 PRSIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 40 ~~~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+++.+|+||-|+| ||||+..+|+--|.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccc
Confidence 4677899999999 58888877765553
No 346
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=30.00 E-value=73 Score=32.08 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=17.4
Q ss_pred HHHhhCCCCCcEEEEeCC--CChHhHHHH
Q 017087 34 FAAQVIPRSIKILAVTGT--NGKSTVVTF 60 (377)
Q Consensus 34 ~~~~~~~~~~~~I~VTGT--nGKTTT~~~ 60 (377)
.+.++..+..-+|.|||. .|||||.+.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 344444334458899994 589999863
No 347
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=29.74 E-value=53 Score=28.47 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.1
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHH
Q 017087 45 ILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 45 ~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+++|.|.| ||||+...|..++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Confidence 78999987 79999999987774
No 348
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=29.59 E-value=46 Score=28.36 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=18.1
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHH
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
+...|+|.| .+||||+..-|..-.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~ 27 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKA 27 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhc
Confidence 456899999 689999877665444
No 349
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=29.30 E-value=59 Score=28.77 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=18.6
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
.+|+|+|. .||||++.+|+.-|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999995 58999999998766
No 350
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=29.27 E-value=3.7e+02 Score=26.13 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=43.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhccc---CCc--EEEEecCCCC-------------------------CCCChHHHHHHH
Q 017087 267 QGVTWVDDSKATNLEATCTGLMDLK---GHK--CVILLGGQAK-------------------------FGYSGVLIWKTL 316 (377)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~---~~r--~i~v~G~~~~-------------------------~g~~~~~i~~~l 316 (377)
++..++|=....+.+-+.++++-+- +-+ ++-|||+..+ .|...+.=.+.|
T Consensus 281 ~PANFLDvGGgA~~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi~Al~e~~~~vPlVVRL~GtN~e~Gk~iL 360 (387)
T COG0045 281 KPANFLDVGGGATAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVVRLEGTNVEEGKRIL 360 (387)
T ss_pred CCcceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHH
Confidence 3444554446667888888877662 223 3445777543 344455555556
Q ss_pred HhCCCCCcccccCCHHHHHHHHHHhcC
Q 017087 317 VNNGLSIPCFAVANMKDAVNHARRMAT 343 (377)
Q Consensus 317 ~~~g~~~~~~~~~~~~~ai~~a~~~~~ 343 (377)
.++|. ++...+++.+|.+.+.+.++
T Consensus 361 ~esg~--~i~~~~~l~~aa~k~v~~~~ 385 (387)
T COG0045 361 AESGL--NIIAADDLDEAAEKAVELAK 385 (387)
T ss_pred HHcCC--ceEecccHHHHHHHHHHHhh
Confidence 65553 35556777777777665543
No 351
>PRK00023 cmk cytidylate kinase; Provisional
Probab=29.27 E-value=59 Score=28.93 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=19.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
..+|+|+|. .||||++.+|+.-|
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999995 69999999998877
No 352
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=29.21 E-value=38 Score=32.24 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.8
Q ss_pred CCChHhHHHHHHHHHHhCCCC
Q 017087 51 TNGKSTVVTFVGQMLNHLGIE 71 (377)
Q Consensus 51 TnGKTTT~~~l~~iL~~~g~~ 71 (377)
-|||||.++.|..+|.+.|..
T Consensus 64 DHGKTTLTaAITkila~~g~A 84 (449)
T KOG0460|consen 64 DHGKTTLTAAITKILAEKGGA 84 (449)
T ss_pred cCCchhHHHHHHHHHHhcccc
Confidence 489999999999999998753
No 353
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=28.78 E-value=62 Score=28.46 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=18.1
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH
Q 017087 44 KILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
.+++|-|.| ||||+-.+|..++
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 689999988 7999998887543
No 354
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=28.63 E-value=58 Score=28.18 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|+|.| ||||...+|.-++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55799999986 89999988876553
No 355
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=28.61 E-value=81 Score=29.56 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.0
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHH
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
.+...|.++| -.||||+..+|+..|
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3556899998 679999999998877
No 356
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=28.52 E-value=54 Score=25.55 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=16.6
Q ss_pred EEEeCC--CChHhHHHHHHHHHH
Q 017087 46 LAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
|.+.|- .||||++..+++-|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 345665 799999999999883
No 357
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.42 E-value=45 Score=30.45 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|.| ||||...+|.-++.
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55799999987 89999999887664
No 358
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=27.91 E-value=50 Score=29.90 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 56799999986 89999999987764
No 359
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.88 E-value=63 Score=28.14 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=19.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55789999987 79998888876553
No 360
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=27.73 E-value=59 Score=28.60 Aligned_cols=25 Identities=44% Similarity=0.656 Sum_probs=19.3
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
.++|+||. .||||++. .|++.|..+
T Consensus 2 ~iVGLTGgiatGKStVs~----~f~~~G~~v 28 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQ----VFKALGIPV 28 (225)
T ss_pred eEEEeecccccChHHHHH----HHHHcCCcE
Confidence 58999994 79999765 566778765
No 361
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.64 E-value=67 Score=32.09 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=31.9
Q ss_pred HHHHHHhhC----CCCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeee
Q 017087 31 ELDFAAQVI----PRSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 31 ~~~~~~~~~----~~~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+.+++.... +++.-+|.+.|-| ||+|.-+=|+.+|.+.+.++.+
T Consensus 362 sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLI 411 (587)
T KOG0781|consen 362 SVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLI 411 (587)
T ss_pred hhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEE
Confidence 445555332 2344588888866 6999999999999999888754
No 362
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=27.62 E-value=1.2e+02 Score=27.92 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=44.8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCC----CCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc--CCcEEEEecCC
Q 017087 234 LGLDIGVDVEALNSTIEILRTP----PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQ 302 (377)
Q Consensus 234 ~~~~lgi~~~~i~~~l~~~~~~----~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~r~i~v~G~~ 302 (377)
..+..|-++.+++.-|+.|+.. ..||=++. .+|-.+.+ +...+++...+..+. +-+.++|.|+.
T Consensus 8 ~~~~~~~~~~e~~~~l~~f~~~~~~~~~~f~VIK--~GG~~~~~---~~~~~~l~~dla~L~~lGl~~VlVHGgg 77 (271)
T cd04236 8 FLHQKGGDPREARYWLTQFQIAMPNDWPAFAVLE--VDHSVFRS---LEMVQSLSFGLAFLQRMDMKLLVVMGLS 77 (271)
T ss_pred HHHHhCCCHHHHHHHHHHhhccCCCCCCCEEEEE--EChhhhcC---chhHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4567799999999999999976 37898885 34544432 345666666555553 45789998863
No 363
>PRK06851 hypothetical protein; Provisional
Probab=27.53 E-value=81 Score=30.48 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=27.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
..+++.+|| ..||||+..-+...+.+.|+.+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~V 61 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDV 61 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 346899999 6789999999999999889876
No 364
>PRK13946 shikimate kinase; Provisional
Probab=27.37 E-value=67 Score=27.37 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=18.5
Q ss_pred cEEEEeC--CCChHhHHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
+.|.++| -.||||+..+|+.-|
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 4677777 579999999999988
No 365
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=27.31 E-value=67 Score=27.72 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=19.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
+..+++|.|-| ||||...+|.-++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999976 8999988887554
No 366
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=27.02 E-value=45 Score=32.20 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhCC
Q 017087 46 LAVTGT--NGKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL~~~g 69 (377)
+-|+|. .|||.|+.++..-|+..-
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 555553 489999999999998763
No 367
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=27.01 E-value=51 Score=28.11 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=19.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|+|-| ||||...+|..++.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45689999976 69998888876654
No 368
>PF15517 TBPIP_N: TBP-interacting protein N-terminus; PDB: 2CZR_A.
Probab=26.88 E-value=27 Score=26.02 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=18.7
Q ss_pred cccccCCHHHHHHHHHHhcCCC-CEEEEcCCCccccc
Q 017087 324 PCFAVANMKDAVNHARRMATNG-DAIVLSPGCASFDE 359 (377)
Q Consensus 324 ~~~~~~~~~~ai~~a~~~~~~g-divli~~g~~s~~~ 359 (377)
.+...+++++|-+.+.+. ..| |++++ ||-|.|+.
T Consensus 42 ~I~ia~skE~AdKla~k~-~~gi~iivv-P~kgtFYi 76 (99)
T PF15517_consen 42 RIRIAESKEEADKLAEKE-EVGIDIIVV-PGKGTFYI 76 (99)
T ss_dssp EEEE-SSHHHHHHHSS----SSEEEEEE-S-TT-EEE
T ss_pred EEEecCCHHHHHHhhhcc-CCCeEEEEE-CCCCeEEE
Confidence 455678999988777642 223 44444 88888873
No 369
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=26.85 E-value=72 Score=26.59 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=16.8
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 017087 45 ILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL 65 (377)
.|.|+| ..||||++..|+.-|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 456666 469999999999887
No 370
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.82 E-value=2.6e+02 Score=26.12 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHhccc---CCcEEEEecCCCCCC
Q 017087 276 KATNLEATCTGLMDLK---GHKCVILLGGQAKFG 306 (377)
Q Consensus 276 ~a~np~s~~~al~~~~---~~r~i~v~G~~~~~g 306 (377)
.+.+|.++.+.|+... .++.++|+|...-+|
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG 171 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVG 171 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchH
Confidence 5889999999999763 467888888544333
No 371
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=26.55 E-value=70 Score=33.70 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=30.3
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
+.++++.+| -.||||...-|+..|.....+..++|.
T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 568999999 578999999999999887777766664
No 372
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=26.48 E-value=1.1e+02 Score=29.79 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=27.3
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
...++.|-| =.||||.+.+|+.-|-+.|+++.+
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~i 106 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAI 106 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEE
Confidence 445777777 479999999999999999988754
No 373
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.35 E-value=66 Score=30.27 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEc-CCCcc
Q 017087 329 ANMKDAVNHARRMATNGDAIVLS-PGCAS 356 (377)
Q Consensus 329 ~~~~~ai~~a~~~~~~gdivli~-~g~~s 356 (377)
.|...|++++.+.+++||.+++- .|+|+
T Consensus 122 ~Nir~Al~wLV~~aq~gD~LvfHYSGHGt 150 (362)
T KOG1546|consen 122 KNIRRALRWLVESAQPGDSLVFHYSGHGT 150 (362)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEecCCCC
Confidence 57889999999999999998884 78876
No 374
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=26.20 E-value=63 Score=25.86 Aligned_cols=21 Identities=43% Similarity=0.717 Sum_probs=16.5
Q ss_pred EEEEeCCC--ChHhHHHHHHHHH
Q 017087 45 ILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTGTn--GKTTT~~~l~~iL 65 (377)
+|.|+|++ ||||.+..|+.-|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47788854 7999999888766
No 375
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=26.17 E-value=55 Score=27.97 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=16.3
Q ss_pred EEEeC--CCChHhHHHHHHHHH
Q 017087 46 LAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL 65 (377)
|+|.| -.||||.+..|+.-+
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 67777 579999999998753
No 376
>PRK14709 hypothetical protein; Provisional
Probab=26.15 E-value=46 Score=33.31 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.6
Q ss_pred eCCCChHhHHHHHHHHHHhC
Q 017087 49 TGTNGKSTVVTFVGQMLNHL 68 (377)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~ 68 (377)
+|-|||||...+|..+|-..
T Consensus 213 ~G~NGKSt~~~~i~~llG~~ 232 (469)
T PRK14709 213 GGGNGKSVFLNVLAGILGDY 232 (469)
T ss_pred CCCCcHHHHHHHHHHHHhhh
Confidence 57899999999999999653
No 377
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=26.13 E-value=98 Score=26.13 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=22.0
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
|.|||- .||||...-+-+.|+..|.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 678884 689999999999998887765
No 378
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=25.99 E-value=48 Score=29.10 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..++++.|-| ||||...+|..++.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 45789999976 79999998887653
No 379
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=25.93 E-value=64 Score=27.16 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=15.0
Q ss_pred eCCCChHhHHHHHHHHH
Q 017087 49 TGTNGKSTVVTFVGQML 65 (377)
Q Consensus 49 TGTnGKTTT~~~l~~iL 65 (377)
.|-.||||++.-|+..|
T Consensus 8 kgG~GKSt~a~nLA~~l 24 (179)
T cd03110 8 KGGTGKTTVTAALAALL 24 (179)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 35679999999999999
No 380
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=25.92 E-value=69 Score=27.94 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCC
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g 69 (377)
....+-|||-| ||||.-++|+-+++...
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~ 56 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPDA 56 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCCC
Confidence 45688999987 69999999999998654
No 381
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=25.91 E-value=66 Score=29.79 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=7.0
Q ss_pred CEEEEcCCCcccccc
Q 017087 346 DAIVLSPGCASFDEF 360 (377)
Q Consensus 346 divli~~g~~s~~~~ 360 (377)
|+|++..|.|++.++
T Consensus 54 d~vv~~GGDGTi~ev 68 (293)
T TIGR03702 54 STVIAGGGDGTLREV 68 (293)
T ss_pred CEEEEEcCChHHHHH
Confidence 444444455544443
No 382
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=25.81 E-value=63 Score=27.59 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=21.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~ 67 (377)
...+++|.|-| ||||...+|.-++..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 56799999976 599999998887754
No 383
>PRK08356 hypothetical protein; Provisional
Probab=25.77 E-value=1e+02 Score=26.44 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=20.6
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
..+|+|+| -.||||.+.+|. ..|..+..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~----~~g~~~is 34 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE----EKGFCRVS 34 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH----HCCCcEEe
Confidence 35789999 579999999994 25665533
No 384
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=25.66 E-value=4.1e+02 Score=22.48 Aligned_cols=94 Identities=11% Similarity=0.119 Sum_probs=52.4
Q ss_pred EEEEeCCCChH--hHHHHHHHHHHhCCCCeeeeccccchhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccE
Q 017087 45 ILAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV 122 (377)
Q Consensus 45 ~I~VTGTnGKT--TT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i 122 (377)
.|-++|.-|-+ |+..+|+.++...|+.+...-++|.-. ..+.-++-+=+|...+.......+||+
T Consensus 3 ~i~i~G~gGqGv~tag~ila~a~~~~G~~V~~~~~ygs~~-------------RGG~~~~~vris~~~i~~~~~~~~~D~ 69 (181)
T PRK08534 3 EIRFHGRGGQGAVTAAEILAKAAFEDGKFSQAFPFFGVER-------------RGAPVMAFTRIDDKPIRLRSQIYEPDY 69 (181)
T ss_pred EEEEEEECcchHHHHHHHHHHHHHhcCCeEEEEeccChhh-------------cCCcEEEEEEEcCCcccCcccCCCCCE
Confidence 45566666555 555688889999999876555555321 122223334445444432222346788
Q ss_pred EEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCC
Q 017087 123 SVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (377)
Q Consensus 123 ~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~d 164 (377)
.+..|-. +++ ...+...++++|.+|+|.+
T Consensus 70 lva~~~~--------~~~-----~~~~~~~l~~gg~vi~ns~ 98 (181)
T PRK08534 70 VIVQDPT--------LLD-----SVDVTSGLKKDGIIIINTT 98 (181)
T ss_pred EEEcCHH--------Hhc-----chhHhcCcCCCcEEEEECC
Confidence 8876631 111 1123345668999999964
No 385
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=25.53 E-value=45 Score=30.40 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=28.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeeccccchhhh
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~ 84 (377)
...+.|.-|-| |||||-+||-.+|+.. .+.++..|.|++.
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~ 68 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQ 68 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhh
Confidence 45788999977 6999999999999762 2223444555443
No 386
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.28 E-value=70 Score=27.43 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=17.8
Q ss_pred CCcEEEEeCCCC--hHhHHHHHHHH
Q 017087 42 SIKILAVTGTNG--KSTVVTFVGQM 64 (377)
Q Consensus 42 ~~~~I~VTGTnG--KTTT~~~l~~i 64 (377)
+..+++|+|.|| |||...+|.-+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 557999999775 88887777643
No 387
>PRK13764 ATPase; Provisional
Probab=25.16 E-value=1.3e+02 Score=31.25 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
....|.|+| -.||||+...+...+...+..+
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV 288 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIV 288 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE
Confidence 345688888 5699999988888777666544
No 388
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=24.97 E-value=58 Score=26.43 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=15.0
Q ss_pred EEEeCC--CChHhHHHHHHHHH
Q 017087 46 LAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL 65 (377)
|.++|. .||||++..|...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 445553 49999999998875
No 389
>PRK10908 cell division protein FtsE; Provisional
Probab=24.95 E-value=76 Score=27.83 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||...+|.-++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999986 89999999876553
No 390
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=24.70 E-value=72 Score=33.51 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=30.3
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
+.++++..| -.||||...-|+..|.....+..++|.
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGv 386 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGV 386 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcc
Confidence 568999999 578999999999999887777777774
No 391
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=24.61 E-value=62 Score=29.29 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55789999976 89999998886654
No 392
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=24.57 E-value=87 Score=26.62 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.9
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
.+++|+|. .||||....|...+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57788885 589999999999874
No 393
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=24.54 E-value=71 Score=29.09 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|-| ||||...+|.-++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 55789999975 89999999998775
No 394
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.54 E-value=67 Score=28.54 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 55789999976 69999998887664
No 395
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=24.51 E-value=79 Score=25.74 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=19.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|.| ||||...+|.-.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 55789999976 79998888866553
No 396
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=24.44 E-value=3.4e+02 Score=25.63 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=16.1
Q ss_pred CCCCEEEEcCCCcccccccChHHHHHHHHHH
Q 017087 343 TNGDAIVLSPGCASFDEFRNFEHRGMVFQEL 373 (377)
Q Consensus 343 ~~gdivli~~g~~s~~~~~~~~~rg~~f~~~ 373 (377)
+++|+++-+.||-+. -.|++|+++
T Consensus 268 ~e~difVTtTGc~di-------i~~~H~~~m 291 (434)
T KOG1370|consen 268 REVDIFVTTTGCKDI-------ITGEHFDQM 291 (434)
T ss_pred hcCCEEEEccCCcch-------hhHHHHHhC
Confidence 567888877887653 356666654
No 397
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=24.42 E-value=81 Score=27.74 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
+..+++|+|-| ||||...+|.-++
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 55799999976 7999999998776
No 398
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=24.42 E-value=1.1e+02 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=22.3
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+.|+|. .||||.+..+...+...|.++.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 455664 4899999999888877776665444
No 399
>PRK00625 shikimate kinase; Provisional
Probab=24.39 E-value=78 Score=26.91 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=15.9
Q ss_pred EEEeC--CCChHhHHHHHHHHH
Q 017087 46 LAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL 65 (377)
|.++| -.||||++.+|+.-|
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 55566 359999999998877
No 400
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=24.39 E-value=64 Score=28.21 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||...+|.-++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55689999986 89998888886653
No 401
>PRK13949 shikimate kinase; Provisional
Probab=24.39 E-value=83 Score=26.51 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=17.8
Q ss_pred EEEEeC--CCChHhHHHHHHHHHH
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLN 66 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~ 66 (377)
.|.|.| -.||||++.+|+..|.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 467777 4589999999999884
No 402
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=24.25 E-value=88 Score=28.12 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=21.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~ 67 (377)
+..+.+|-|-| ||||+...|..+|..
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34678899977 599999999999964
No 403
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=24.17 E-value=79 Score=26.70 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=20.8
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhC
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLNHL 68 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~~~ 68 (377)
..+..|+|-| ||||+...|..+|-..
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3577888854 8999999999999643
No 404
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=24.16 E-value=79 Score=27.88 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|.| ||||...+|.-++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 55789999976 79998888876553
No 405
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=24.14 E-value=88 Score=30.11 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=18.7
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
+.-.|.|+|- .|||||.+.+...+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999995 489999877766554
No 406
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=24.13 E-value=1.5e+02 Score=24.93 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=26.9
Q ss_pred CChHHHHHHHHhCCCCCc-ccccCCHHHHHHHHHHhc---CCCCEEEEc
Q 017087 307 YSGVLIWKTLVNNGLSIP-CFAVANMKDAVNHARRMA---TNGDAIVLS 351 (377)
Q Consensus 307 ~~~~~i~~~l~~~g~~~~-~~~~~~~~~ai~~a~~~~---~~gdivli~ 351 (377)
.+...+...+++.|.... ...++|-.+.++.+++.+ +..|+|+.+
T Consensus 22 ~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVItt 70 (163)
T TIGR02667 22 TSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILIT 70 (163)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 345567777887775432 234555555555555443 457988886
No 407
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=24.07 E-value=79 Score=28.12 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|.| ||||...+|.-++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55799999987 79998888886653
No 408
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=24.00 E-value=99 Score=27.03 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHH--HHHhCCC
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQ--MLNHLGI 70 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~--iL~~~g~ 70 (377)
...+++|||.| ||||...++.. +|.+.|.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~ 60 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC 60 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 34789999976 89998888864 4444554
No 409
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.98 E-value=62 Score=29.70 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|.| ||||+..+|.-++.
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55799999977 79999999886654
No 410
>PF13173 AAA_14: AAA domain
Probab=23.90 E-value=94 Score=24.56 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=17.0
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHH
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
.+++.|+| -.||||...-+.+=+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36888999 689999886555433
No 411
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=23.83 E-value=70 Score=26.85 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=16.8
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH
Q 017087 44 KILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
++|+|.|.+ ||||.+..|...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578888865 7999887777644
No 412
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=23.80 E-value=1.1e+02 Score=28.82 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=18.6
Q ss_pred HHHHhhCCCCCcEEEEeC--CCChHhHHHHHHH
Q 017087 33 DFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQ 63 (377)
Q Consensus 33 ~~~~~~~~~~~~~I~VTG--TnGKTTT~~~l~~ 63 (377)
+++.... +....|.|+| ..||||+...|..
T Consensus 139 ~~L~~~v-~~~~~ilI~G~tGSGKTTll~aL~~ 170 (319)
T PRK13894 139 EAIIAAV-RAHRNILVIGGTGSGKTTLVNAIIN 170 (319)
T ss_pred HHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHH
Confidence 4555444 3445677777 3589988776554
No 413
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=23.77 E-value=85 Score=27.35 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=18.9
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 44 ~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
.+++|.|.| ||||....|...|-
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l~ 47 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYALT 47 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 489999977 79999988887764
No 414
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=23.71 E-value=66 Score=27.76 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=19.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45789999976 79998888886654
No 415
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.63 E-value=66 Score=27.84 Aligned_cols=25 Identities=16% Similarity=0.482 Sum_probs=19.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|.| ||||...+|.-++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55789999976 68888888776654
No 416
>PRK12338 hypothetical protein; Provisional
Probab=23.63 E-value=82 Score=29.78 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.8
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
..+|.|+|+ .||||.+..|+.-|
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 468999995 58999999999887
No 417
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=23.60 E-value=90 Score=20.48 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.3
Q ss_pred cCCHHHHHHHHHHhcCCCCEEE
Q 017087 328 VANMKDAVNHARRMATNGDAIV 349 (377)
Q Consensus 328 ~~~~~~ai~~a~~~~~~gdivl 349 (377)
..+.++|++.+...-..+++||
T Consensus 18 A~s~eeA~~~v~~~y~~~eivL 39 (48)
T PF14207_consen 18 AESEEEAIEKVRDAYRNEEIVL 39 (48)
T ss_pred eCCHHHHHHHHHHHHhCCCEEc
Confidence 5789999999999888999776
No 418
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=23.60 E-value=78 Score=28.17 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
..+.+|.|-| ||||+..+|..+|.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3488999987 79999999997774
No 419
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.58 E-value=59 Score=28.51 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=19.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999976 69998888876553
No 420
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=23.51 E-value=2.3e+02 Score=21.79 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=22.6
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
..+.+.|+| -.|||++...+..-+...+..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v 50 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPF 50 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe
Confidence 356788888 4689999998888886545443
No 421
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=23.38 E-value=55 Score=28.96 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|.| ||||...+|.-++.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55789999986 79999998887765
No 422
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.35 E-value=1.6e+02 Score=29.61 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=20.6
Q ss_pred HHhhCCCCCcEEEEeCC--CChHhHHHHHHHHHHh
Q 017087 35 AAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (377)
Q Consensus 35 ~~~~~~~~~~~I~VTGT--nGKTTT~~~l~~iL~~ 67 (377)
+.+.+.++.-+|.|||. +|||||-+-+-+-|..
T Consensus 250 ~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 250 LLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred HHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 33444345568999995 5788886654444433
No 423
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=23.33 E-value=71 Score=28.15 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 55799999976 79999888886654
No 424
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=23.21 E-value=65 Score=30.57 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=17.0
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHh
Q 017087 45 ILAVTGT--NGKSTVVTFVGQMLNH 67 (377)
Q Consensus 45 ~I~VTGT--nGKTTT~~~l~~iL~~ 67 (377)
-|.++|. .||||.+..+++.|..
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~ 90 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNW 90 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCC
Confidence 3555553 4899999999999853
No 425
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=23.21 E-value=85 Score=29.72 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=18.3
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHH
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
.+.|+|.| +.||||.+..|...+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45788888 568999998888765
No 426
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.17 E-value=68 Score=29.46 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||+..+|.-++.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999986 89999999887664
No 427
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=23.16 E-value=1.4e+02 Score=27.61 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEcCCCc-------ccccccChHHHHHHHHHHHhcC
Q 017087 329 ANMKDAVNHARRMATNGDAIVLSPGCA-------SFDEFRNFEHRGMVFQELAFSA 377 (377)
Q Consensus 329 ~~~~~ai~~a~~~~~~gdivli~~g~~-------s~~~~~~~~~rg~~f~~~v~~~ 377 (377)
....+.+..+++.-+| |+++++ ||- ++..+.+|. .+.+|-+.|+.|
T Consensus 140 ~eqp~~i~~Ll~~~~P-DIlViT-GHD~~~K~~~d~~dl~~Yr-nSkyFVeaV~~a 192 (287)
T PF05582_consen 140 KEQPEKIYRLLEEYRP-DILVIT-GHDGYLKNKKDYSDLNNYR-NSKYFVEAVKEA 192 (287)
T ss_pred HHhhHHHHHHHHHcCC-CEEEEe-CchhhhcCCCChhhhhhhh-ccHHHHHHHHHH
Confidence 4456777788888888 888774 553 456666664 456788888764
No 428
>PRK03839 putative kinase; Provisional
Probab=23.12 E-value=90 Score=26.28 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=16.0
Q ss_pred EEEeC--CCChHhHHHHHHHHH
Q 017087 46 LAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL 65 (377)
|.|+| -.||||.+..|+.-|
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 56666 359999999998887
No 429
>PRK10436 hypothetical protein; Provisional
Probab=23.09 E-value=1.1e+02 Score=30.52 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=17.4
Q ss_pred HHhhCCCCCcEEEEeCC--CChHhHHH-HHHH
Q 017087 35 AAQVIPRSIKILAVTGT--NGKSTVVT-FVGQ 63 (377)
Q Consensus 35 ~~~~~~~~~~~I~VTGT--nGKTTT~~-~l~~ 63 (377)
+.+...+..-.|.|||. .|||||.+ +|.+
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~ 241 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLYSALQT 241 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHHHHHHh
Confidence 33333234457888884 58999873 3444
No 430
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=23.09 E-value=91 Score=27.43 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCC
Q 017087 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQA 303 (377)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~ 303 (377)
+.++|||++-+.+|+.++..+..+..+..++++|+..
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~ 156 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPS 156 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE---
T ss_pred ceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCce
Confidence 4577888878889999999999887777888899763
No 431
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=23.02 E-value=97 Score=27.46 Aligned_cols=28 Identities=32% Similarity=0.660 Sum_probs=21.2
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHH--HHhCC
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQM--LNHLG 69 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~i--L~~~g 69 (377)
+..++.+||. .||||...++..+ |.+.|
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g 60 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG 60 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhC
Confidence 4568999996 5999998887754 55555
No 432
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=22.97 E-value=68 Score=27.71 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=19.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|.| ||||...+|..++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999976 79998888876553
No 433
>PF05729 NACHT: NACHT domain
Probab=22.83 E-value=1.1e+02 Score=24.66 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=20.4
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCC
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGI 70 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~ 70 (377)
++.|+| =.||||++..+..-+...+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 566776 36899999999988887764
No 434
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=22.74 E-value=90 Score=29.05 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=19.7
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCC
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~ 71 (377)
..++|.||| -.||||+...+. ..|+.
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~----~~g~~ 32 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE----DLGYY 32 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH----HcCCe
Confidence 456899999 568999998885 45653
No 435
>PRK13948 shikimate kinase; Provisional
Probab=22.61 E-value=1e+02 Score=26.45 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=19.3
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHH
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
....|.++| -.||||+..+|+.-|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 345677777 679999999999887
No 436
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.60 E-value=75 Score=26.09 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|.| ||||...+|.-++.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45799999976 79998888876654
No 437
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.59 E-value=91 Score=27.28 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999976 79999999886653
No 438
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=22.47 E-value=92 Score=26.53 Aligned_cols=20 Identities=40% Similarity=0.409 Sum_probs=15.0
Q ss_pred CCcEEEEeCCCC--hHhHHHHH
Q 017087 42 SIKILAVTGTNG--KSTVVTFV 61 (377)
Q Consensus 42 ~~~~I~VTGTnG--KTTT~~~l 61 (377)
...+++|+|.|| |||.-.++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 557999999885 77766655
No 439
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=22.43 E-value=72 Score=28.28 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=19.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|.| ||||...+|.-++.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45689999976 79998888876553
No 440
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=22.28 E-value=92 Score=28.08 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=19.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|.| ||||...+|.-++.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45789999976 79999988876553
No 441
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=22.26 E-value=98 Score=28.43 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEcCCCc-------ccccccChHHHHHHHHHHHhcC
Q 017087 329 ANMKDAVNHARRMATNGDAIVLSPGCA-------SFDEFRNFEHRGMVFQELAFSA 377 (377)
Q Consensus 329 ~~~~~ai~~a~~~~~~gdivli~~g~~-------s~~~~~~~~~rg~~f~~~v~~~ 377 (377)
....+.+..+++.-+| |+++|+ ||- ++..+.+|. .+.+|-+.|+.|
T Consensus 139 ~eqp~~i~~Ll~~~~P-DIlViT-GHD~~~K~~~d~~dl~~Yr-nSkyFVeaVk~a 191 (283)
T TIGR02855 139 KEMPEKVLDLIEEVRP-DILVIT-GHDAYSKNKGNYMDLNAYR-HSKYFVETVREA 191 (283)
T ss_pred hhchHHHHHHHHHhCC-CEEEEe-CchhhhcCCCChhhhhhhh-hhHHHHHHHHHH
Confidence 4456777777777888 888774 554 455566664 456788888764
No 442
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.24 E-value=93 Score=26.96 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=19.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
+..+++|+|-| ||||...+|.-++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55789999976 7999998888655
No 443
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=22.19 E-value=5.3e+02 Score=22.52 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=39.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhccc---CCcEEEEecCCCCCCCChHHHHHHHHh
Q 017087 268 GVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKFGYSGVLIWKTLVN 318 (377)
Q Consensus 268 ~~~iidD~~a~np~s~~~al~~~~---~~r~i~v~G~~~~~g~~~~~i~~~l~~ 318 (377)
.+.+|-|- +.+.++++++|+.+. ....++++|+.-++|..+.+..+.+.+
T Consensus 18 ri~vigDI-HG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~ 70 (218)
T PRK11439 18 HIWLVGDI-HGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEE 70 (218)
T ss_pred eEEEEEcc-cCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHc
Confidence 56788998 678999999999874 234677789988888888887777765
No 444
>PRK06835 DNA replication protein DnaC; Validated
Probab=22.18 E-value=93 Score=29.57 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=23.3
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
..+.+.| -.|||..+..|+.-+...|.++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y 216 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIY 216 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 4455555 249999999999988888887644
No 445
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=22.14 E-value=73 Score=27.68 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=19.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55799999976 79998888876553
No 446
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=22.07 E-value=2e+02 Score=25.53 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=24.8
Q ss_pred CCcEEEEeCCC--ChHhHH-HHHHHHHHhCCCCeeeecc
Q 017087 42 SIKILAVTGTN--GKSTVV-TFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~-~~l~~iL~~~g~~~~~~g~ 77 (377)
...++.|+|.+ ||||.+ .++...++ .|.++.+...
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~ 60 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVST 60 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeC
Confidence 34599999975 899995 77777665 4766654443
No 447
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.06 E-value=74 Score=28.51 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|.| ||||...+|.-++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 45689999976 79998888887664
No 448
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=22.04 E-value=81 Score=27.33 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|-| ||||...+|.-++.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55789999976 79998888876653
No 449
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=21.98 E-value=1.3e+02 Score=26.16 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=20.9
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH--HhCCC
Q 017087 44 KILAVTGTN--GKSTVVTFVGQML--NHLGI 70 (377)
Q Consensus 44 ~~I~VTGTn--GKTTT~~~l~~iL--~~~g~ 70 (377)
.+++|||-| ||||...+|.... ...|.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~ 56 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGA 56 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCC
Confidence 799999966 7999999997644 34554
No 450
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.93 E-value=89 Score=27.64 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|+|.| ||||...+|.-++.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 55799999986 79999999987664
No 451
>PRK14530 adenylate kinase; Provisional
Probab=21.89 E-value=99 Score=27.04 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
+.|.|.|. .||||.+..|+..+ |..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~---~~~~ 31 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF---GVEH 31 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCeE
Confidence 45777774 58999999998877 5544
No 452
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=21.87 E-value=94 Score=27.56 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=19.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 56799999976 79998888876553
No 453
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=21.83 E-value=67 Score=26.59 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=14.2
Q ss_pred CChHhHHHHHHHHHHh
Q 017087 52 NGKSTVVTFVGQMLNH 67 (377)
Q Consensus 52 nGKTTT~~~l~~iL~~ 67 (377)
.||||+..+|+..|.-
T Consensus 3 sGKStvg~~lA~~L~~ 18 (158)
T PF01202_consen 3 SGKSTVGKLLAKRLGR 18 (158)
T ss_dssp SSHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHhCC
Confidence 5999999999999953
No 454
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.53 E-value=80 Score=27.97 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|...+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55799999986 89999998887664
No 455
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=21.51 E-value=78 Score=27.69 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||...+|..++.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55789999976 79998888876654
No 456
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=21.48 E-value=1.4e+02 Score=25.98 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=16.4
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHh
Q 017087 45 ILAVTGTN--GKSTVVTFVGQMLNH 67 (377)
Q Consensus 45 ~I~VTGTn--GKTTT~~~l~~iL~~ 67 (377)
.|+|+|.+ ||||+...+...|..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCc
Confidence 68899866 577777777666654
No 457
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.47 E-value=3.8e+02 Score=24.94 Aligned_cols=68 Identities=9% Similarity=-0.023 Sum_probs=40.7
Q ss_pred eccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc-
Q 017087 213 HNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK- 291 (377)
Q Consensus 213 ~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~- 291 (377)
+++|+|...+...++-++ +++.=..+|..+. -||+-. .+. .+.+.+|.++.+.++.+.
T Consensus 96 vq~Plp~~i~~~~i~~~I----------~p~KDVDGl~~~n--~g~l~~----~~~-----~~~PcTp~ai~~ll~~~~i 154 (286)
T PRK14175 96 VQVPLPKQVSEQKILEAI----------NPEKDVDGFHPIN--IGKLYI----DEQ-----TFVPCTPLGIMEILKHADI 154 (286)
T ss_pred EeCCCCCCCCHHHHHhcc----------CcccCcccCCccc--hHhHhc----CCC-----CCCCCcHHHHHHHHHHcCC
Confidence 368998877776665554 3332223333221 334311 111 135889999999999874
Q ss_pred --CCcEEEEecC
Q 017087 292 --GHKCVILLGG 301 (377)
Q Consensus 292 --~~r~i~v~G~ 301 (377)
.++.++|+|.
T Consensus 155 ~l~Gk~vvVIGr 166 (286)
T PRK14175 155 DLEGKNAVVIGR 166 (286)
T ss_pred CCCCCEEEEECC
Confidence 4678888885
No 458
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=21.35 E-value=88 Score=29.75 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=18.5
Q ss_pred HHHhhCCCCCcEEEEeC--CCChHhHHHHHHHH
Q 017087 34 FAAQVIPRSIKILAVTG--TNGKSTVVTFVGQM 64 (377)
Q Consensus 34 ~~~~~~~~~~~~I~VTG--TnGKTTT~~~l~~i 64 (377)
++.... +....|.|+| ..||||+...|-..
T Consensus 152 ~L~~~v-~~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 152 FLEHAV-ISKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred HHHHHH-HcCCcEEEECCCCCCHHHHHHHHHhh
Confidence 343333 3456788887 56899987655433
No 459
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.33 E-value=1.3e+02 Score=21.49 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhhc
Q 017087 223 YHNAAVAALSVLGLDIGVDVEALNSTIEI 251 (377)
Q Consensus 223 ~~NalaA~~~a~~~~lgi~~~~i~~~l~~ 251 (377)
-+|-++|. +....||+|++..+.-+..
T Consensus 26 T~NPl~AM--a~i~qLGip~eKLQ~lm~~ 52 (82)
T PF11212_consen 26 TQNPLAAM--ATIQQLGIPQEKLQQLMAQ 52 (82)
T ss_pred hhCHHHHH--HHHHHcCCCHHHHHHHHHH
Confidence 35678888 7888999999987765543
No 460
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=21.30 E-value=86 Score=31.88 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.3
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHH
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQM 64 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~i 64 (377)
.++|.+.|.| |.||||+-+|+++.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHh
Confidence 4677788888 99999999999874
No 461
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=21.27 E-value=72 Score=29.74 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..++++.|-| ||||+..+|.-++.
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55789999976 79999998876653
No 462
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=21.25 E-value=3.1e+02 Score=26.54 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=25.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
...++.|+|.. ||||....+..-+...|.++.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYv 116 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYV 116 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 34688899854 89999998887777777666543
No 463
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=21.17 E-value=1e+02 Score=26.57 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=19.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|.| ||||...+|.-++.
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 56799999976 59998888876653
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=21.16 E-value=87 Score=24.04 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCC
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~~g 69 (377)
..+.|.|. .||||++..+...+...+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 45666664 489999999988887765
No 465
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=21.09 E-value=55 Score=30.03 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=19.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhC
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHL 68 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~ 68 (377)
...+.+-|+ +|||||-.||..+++..
T Consensus 27 gef~vliGpSGsGKTTtLkMINrLiept 54 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINRLIEPT 54 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 345555564 58999999999998754
No 466
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=21.03 E-value=69 Score=30.55 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|-| ||||...+|.-++.
T Consensus 30 ~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 30 AGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 55789999986 89999999987765
No 467
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=21.02 E-value=1.5e+02 Score=24.80 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=20.6
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 46 I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
+.|+|. .|||+.+.-+..-....|.++.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 456674 47999887655544466877755543
No 468
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=21.00 E-value=1.1e+02 Score=25.87 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=19.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|.| ||||...+|.-++.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45789999976 79998888877654
No 469
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=20.96 E-value=1.9e+02 Score=20.92 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=29.4
Q ss_pred CCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCC
Q 017087 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53 (377)
Q Consensus 12 ~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnG 53 (377)
.+.+-....|++.|+|++-...-..... ++...|-|-|++|
T Consensus 40 g~~SH~aIlAr~~giP~ivg~~~~~~~i-~~g~~v~lDg~~G 80 (80)
T PF00391_consen 40 GPTSHAAILARELGIPAIVGVGDATEAI-KDGDWVTLDGNSG 80 (80)
T ss_dssp STTSHHHHHHHHTT-EEEESTTTHHHHS-CTTEEEEEETTTT
T ss_pred CccchHHHHHHHcCCCEEEeeccHhhcc-CCCCEEEEECCCC
Confidence 3445556789999999988776555555 4677888888887
No 470
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=20.95 E-value=70 Score=29.95 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=21.8
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCC
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGI 70 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~ 70 (377)
-|+.-| -|||||.+..|...|...|.
T Consensus 14 NigtiGHvdHGKTTLtaAit~~la~~~~ 41 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVLAKKGG 41 (394)
T ss_pred EEEEeccccCchhhHHHHHHHHHHhhcc
Confidence 466667 69999999999999998764
No 471
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=20.91 E-value=93 Score=27.56 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|.| ||||...+|.-++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 55789999976 79998888887764
No 472
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=20.89 E-value=86 Score=27.87 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|.| ||||...+|.-++.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45799999976 79998888876653
No 473
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=20.86 E-value=1e+02 Score=26.52 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
+..+++|+|.| ||||...+|.-++
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55789999986 8999888887665
No 474
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.85 E-value=4.3e+02 Score=26.09 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=69.1
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeeccccchhhh-hhhhcccCCCCCCCccEEEEEeCccccccCCcccc
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE-AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFC 119 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~-~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~ 119 (377)
.-+|.|.|- -||||+---+.+-|.+.+ ++.+..-=.++-.. .+-+++..+ .+.-+..-|+....+...-...+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~---~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLP---TNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCC---ccceEEehhcCHHHHHHHHHhcC
Confidence 458999995 579998888888888777 65443321111111 111111111 12234667777655433222368
Q ss_pred ccEEEEecCCcchhcCC----CCHHHHHHHHHHhcccCCCCceEE
Q 017087 120 PTVSVVLNLTPDHLERH----KTMKNYALTKCHLFSHMVNTKLGL 160 (377)
Q Consensus 120 p~i~ViTni~~dHl~~~----gt~e~~~~~K~~i~~~~~~~~~~v 160 (377)
|++.||=+|.-=|.+.. ||..++.+.-..+++..+..+..+
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~ 213 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAI 213 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeE
Confidence 99999999987665543 688888888888877665555443
No 475
>PRK11054 helD DNA helicase IV; Provisional
Probab=20.81 E-value=1e+02 Score=32.53 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=17.7
Q ss_pred CCcEEEEeCCCChHhHH-HHHHHHHHhCC
Q 017087 42 SIKILAVTGTNGKSTVV-TFVGQMLNHLG 69 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~-~~l~~iL~~~g 69 (377)
..-++|.+|| |||||. .-+++++...+
T Consensus 211 ~~lV~agaGS-GKT~vl~~r~ayLl~~~~ 238 (684)
T PRK11054 211 SLLVLAGAGS-GKTSVLVARAGWLLARGQ 238 (684)
T ss_pred CeEEEEeCCC-CHHHHHHHHHHHHHHhCC
Confidence 3456777775 999997 44556665544
No 476
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=20.79 E-value=77 Score=28.09 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45689999976 79999999886653
No 477
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.78 E-value=88 Score=27.63 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|+|-| ||||...+|.-++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55789999976 79999888886664
No 478
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=20.74 E-value=1e+02 Score=24.86 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=15.8
Q ss_pred EEEeC--CCChHhHHHHHHHHH
Q 017087 46 LAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL 65 (377)
|.++| ..||||.+..|+.-|
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 45555 469999999999887
No 479
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=20.73 E-value=1e+02 Score=27.48 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|.| ||||...+|.-++.
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 55799999976 79999999876653
No 480
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=20.68 E-value=2.3e+02 Score=23.77 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHhccc---CCcEEEEecCCCCCCCChHHHHHHHHhCCCCCccccc----CCHHHHHHHHHHhcCCCCEE
Q 017087 276 KATNLEATCTGLMDLK---GHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAV----ANMKDAVNHARRMATNGDAI 348 (377)
Q Consensus 276 ~a~np~s~~~al~~~~---~~r~i~v~G~~~~~g~~~~~i~~~l~~~g~~~~~~~~----~~~~~ai~~a~~~~~~gdiv 348 (377)
.+.+|.++.+.|+... .++.++|+|...-.| ..+...|...+. .+..+ .|.++ ..+..|+|
T Consensus 16 ~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG---~Pla~lL~~~~a--tVt~~h~~T~~l~~-------~~~~ADIV 83 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVG---KPLAMLLLNKGA--TVTICHSKTKNLQE-------ITRRADIV 83 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTH---HHHHHHHHHTT---EEEEE-TTSSSHHH-------HHTTSSEE
T ss_pred cCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCC---hHHHHHHHhCCC--eEEeccCCCCcccc-------eeeeccEE
Confidence 4678999999998763 467888888644333 334444444432 23222 23333 23456877
Q ss_pred EEcCCCccc
Q 017087 349 VLSPGCASF 357 (377)
Q Consensus 349 li~~g~~s~ 357 (377)
+...|...|
T Consensus 84 Vsa~G~~~~ 92 (160)
T PF02882_consen 84 VSAVGKPNL 92 (160)
T ss_dssp EE-SSSTT-
T ss_pred eeeeccccc
Confidence 776555544
No 481
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.65 E-value=99 Score=25.86 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~ 67 (377)
+..+++|.|.| ||||...+|.-++..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 56789999976 799998888877653
No 482
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=20.64 E-value=1.1e+02 Score=25.51 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||...+|.-++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55789999976 89999999987664
No 483
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=20.63 E-value=1e+02 Score=28.88 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=17.7
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
+....|.|+|. .||||+...|...+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 35578999995 47888877665544
No 484
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=20.58 E-value=81 Score=27.49 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|+|-| ||||...+|.-++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55789999977 69998888887654
No 485
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=20.56 E-value=75 Score=29.58 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..++++.|-| ||||+..+|.-++.
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55789999976 79999999887664
No 486
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=20.56 E-value=34 Score=30.04 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=37.4
Q ss_pred hhhhhcccC-CCcHHHHHHHHcCCce--eeHHHHHHhhC----CCCCcEEEEeCCCChHh-HHHHHHHHHHhC
Q 017087 4 LWLFLLEFQ-LKATGLACLLQSGKRV--MSELDFAAQVI----PRSIKILAVTGTNGKST-VVTFVGQMLNHL 68 (377)
Q Consensus 4 ~~~~~~~~~-~~~p~~~~a~~~~~~~--l~~~~~~~~~~----~~~~~~I~VTGTnGKTT-T~~~l~~iL~~~ 68 (377)
|||..+-.+ .+.+-...|.+.|+++ ..+++...-.+ .+..-+|+|+ |+||+= .+..|..-+++.
T Consensus 72 lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iais-T~G~sP~la~~lr~~ie~~ 143 (205)
T TIGR01470 72 LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAIS-SGGAAPVLARLLRERIETL 143 (205)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEE-CCCCCcHHHHHHHHHHHHh
Confidence 344444333 2334445788999999 67777544322 2344588887 888764 445555555543
No 487
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=20.50 E-value=84 Score=28.12 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=19.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||...+|.-++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45689999976 79998888876553
No 488
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=20.48 E-value=68 Score=30.35 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|-| ||||+..+|.-++.
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 55799999976 79999999988775
No 489
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=20.46 E-value=99 Score=27.01 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=19.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|.| ||||...+|.-++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45789999986 79988888876543
No 490
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=20.44 E-value=87 Score=26.34 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=16.2
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 017087 45 ILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL 65 (377)
+|.|+| -.||||.+..|++-+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 356666 469999999998866
No 491
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.39 E-value=84 Score=28.06 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=19.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|.| ||||...+|.-++.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999976 79998888886653
No 492
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.33 E-value=1.1e+02 Score=27.58 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|.| ||||...+|.-++.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45689999976 79999999987765
No 493
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.30 E-value=5.3e+02 Score=21.78 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=28.9
Q ss_pred CCChHHHHHHHHhCCCCC---cc----cccCCHHHHHHHHHHhcCCCCEEEEc
Q 017087 306 GYSGVLIWKTLVNNGLSI---PC----FAVANMKDAVNHARRMATNGDAIVLS 351 (377)
Q Consensus 306 g~~~~~i~~~l~~~g~~~---~~----~~~~~~~~ai~~a~~~~~~gdivli~ 351 (377)
|.....+.+.+++.|+.. .+ ....+.++.++.+.+.+++|++||+=
T Consensus 106 G~~~~~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i~~~~~~~~~~g~Iil~H 158 (191)
T TIGR02764 106 GAFNKAVLKAAESLGYTVVHWSVDSRDWKNPGVESIVDRVVKNTKPGDIILLH 158 (191)
T ss_pred cCCCHHHHHHHHHcCCeEEEecCCCCccCCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 344455566666655421 00 11246678888888999999999874
No 494
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=20.30 E-value=1.1e+02 Score=27.45 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|.| ||||...+|.-++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 56799999976 68888888876654
No 495
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=20.25 E-value=58 Score=28.51 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=17.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
..+++|.|-| ||||+...|...|
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeE
Confidence 3488999977 7999988886544
No 496
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=20.24 E-value=90 Score=27.04 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=19.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||...+|.-++.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55789999976 79998888876654
No 497
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=20.21 E-value=1.1e+02 Score=26.43 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||...+|.-++.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 55789999976 89999998887654
No 498
>PF14516 AAA_35: AAA-like domain
Probab=20.18 E-value=2.6e+02 Score=26.50 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeee
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+....+.|.|.. ||||+..-+.+-+++.|+.+..
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~ 64 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVY 64 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEE
Confidence 446789999974 9999999999999988988753
No 499
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=20.13 E-value=1.3e+02 Score=25.05 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=21.4
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhCC
Q 017087 44 KILAVTGTN--GKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 44 ~~I~VTGTn--GKTTT~~~l~~iL~~~g 69 (377)
....|||-| |||+....+..++-.+.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~ 49 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQ 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 589999977 89999988888776554
No 500
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.12 E-value=92 Score=27.75 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||...+|.-++.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55789999976 79998888876553
Done!