Query 017087
Match_columns 377
No_of_seqs 249 out of 1761
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 08:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lk7_A UDP-N-acetylmuramoylala 100.0 5E-71 1.7E-75 544.6 40.9 355 2-376 73-447 (451)
2 2x5o_A UDP-N-acetylmuramoylala 100.0 5.2E-65 1.8E-69 500.3 35.6 346 3-376 66-435 (439)
3 4hv4_A UDP-N-acetylmuramate--L 100.0 2E-59 6.7E-64 466.3 33.7 341 2-362 82-476 (494)
4 3hn7_A UDP-N-acetylmuramate-L- 100.0 8E-59 2.7E-63 464.8 35.7 352 2-363 81-512 (524)
5 1p3d_A UDP-N-acetylmuramate--a 100.0 2.5E-56 8.5E-61 442.8 31.8 340 3-363 79-468 (475)
6 2f00_A UDP-N-acetylmuramate--L 100.0 8.8E-56 3E-60 440.4 28.7 341 3-363 80-474 (491)
7 2am1_A SP protein, UDP-N-acety 100.0 6.3E-56 2.2E-60 437.7 21.6 305 42-376 99-451 (454)
8 1gg4_A UDP-N-acetylmuramoylala 100.0 3.7E-55 1.3E-59 431.6 23.0 307 42-375 99-444 (452)
9 1j6u_A UDP-N-acetylmuramate-al 100.0 7E-54 2.4E-58 424.0 30.0 327 3-362 73-448 (469)
10 1e8c_A UDP-N-acetylmuramoylala 100.0 2.6E-52 8.8E-57 416.1 31.2 312 42-362 107-475 (498)
11 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 2.1E-51 7.2E-56 412.3 30.2 311 42-362 145-513 (535)
12 2vos_A Folylpolyglutamate synt 100.0 1.7E-48 5.9E-53 386.5 24.8 322 27-363 45-478 (487)
13 3nrs_A Dihydrofolate:folylpoly 100.0 1E-47 3.4E-52 376.7 28.1 311 29-364 35-432 (437)
14 3eag_A UDP-N-acetylmuramate:L- 100.0 1.1E-47 3.6E-52 362.9 25.1 248 2-257 67-326 (326)
15 1o5z_A Folylpolyglutamate synt 100.0 9.1E-48 3.1E-52 377.5 24.6 298 41-364 50-428 (442)
16 1jbw_A Folylpolyglutamate synt 100.0 6.7E-48 2.3E-52 377.6 23.3 315 29-363 22-419 (428)
17 1w78_A FOLC bifunctional prote 100.0 1.9E-46 6.4E-51 366.9 25.7 305 29-363 36-410 (422)
18 3mvn_A UDP-N-acetylmuramate:L- 99.6 1.6E-15 5.3E-20 128.2 10.3 116 242-362 11-155 (163)
19 1pjq_A CYSG, siroheme synthase 95.2 0.0033 1.1E-07 61.3 -0.1 66 3-69 74-147 (457)
20 3fwy_A Light-independent proto 93.7 0.067 2.3E-06 49.2 5.1 36 41-76 46-83 (314)
21 3fgn_A Dethiobiotin synthetase 93.3 0.086 2.9E-06 46.8 5.0 41 35-75 18-61 (251)
22 1xjc_A MOBB protein homolog; s 92.8 0.14 4.6E-06 42.6 5.2 36 41-76 2-39 (169)
23 4dzz_A Plasmid partitioning pr 92.6 0.12 4.2E-06 43.6 4.9 33 43-75 1-36 (206)
24 3of5_A Dethiobiotin synthetase 92.5 0.13 4.4E-06 44.9 4.9 35 41-75 2-39 (228)
25 3cio_A ETK, tyrosine-protein k 92.1 0.4 1.4E-05 43.5 7.9 35 41-75 102-139 (299)
26 1byi_A Dethiobiotin synthase; 91.9 0.14 4.7E-06 44.1 4.3 31 44-74 2-35 (224)
27 2g0t_A Conserved hypothetical 91.9 1.2 4E-05 41.4 10.7 106 42-148 168-309 (350)
28 3bfv_A CAPA1, CAPB2, membrane 91.3 0.34 1.2E-05 43.4 6.4 35 41-75 80-117 (271)
29 3la6_A Tyrosine-protein kinase 91.2 0.32 1.1E-05 43.9 6.1 35 41-75 90-127 (286)
30 3ea0_A ATPase, para family; al 91.1 0.2 6.9E-06 43.5 4.7 34 41-74 2-39 (245)
31 1wcv_1 SOJ, segregation protei 90.5 0.24 8.3E-06 43.7 4.6 35 41-75 4-41 (257)
32 2ph1_A Nucleotide-binding prot 90.5 0.48 1.6E-05 41.9 6.6 43 32-75 8-53 (262)
33 1g3q_A MIND ATPase, cell divis 89.8 0.35 1.2E-05 41.8 4.9 32 44-75 3-37 (237)
34 3qxc_A Dethiobiotin synthetase 89.3 0.39 1.3E-05 42.2 4.9 35 41-75 19-56 (242)
35 1zu4_A FTSY; GTPase, signal re 88.9 0.46 1.6E-05 43.7 5.2 35 42-76 104-140 (320)
36 2oze_A ORF delta'; para, walke 88.7 0.21 7.4E-06 45.0 2.8 26 49-74 45-70 (298)
37 2xj4_A MIPZ; replication, cell 88.3 0.47 1.6E-05 42.6 4.8 31 44-74 5-38 (286)
38 1vma_A Cell division protein F 88.2 0.55 1.9E-05 42.8 5.2 35 42-76 103-139 (306)
39 1hyq_A MIND, cell division inh 87.7 0.5 1.7E-05 41.6 4.5 32 44-75 3-37 (263)
40 3q9l_A Septum site-determining 86.9 0.67 2.3E-05 40.5 4.9 31 44-74 3-36 (260)
41 3cwq_A Para family chromosome 86.7 0.69 2.4E-05 39.4 4.7 29 45-74 2-33 (209)
42 3k9g_A PF-32 protein; ssgcid, 86.6 0.61 2.1E-05 41.2 4.5 33 41-74 25-60 (267)
43 1rz3_A Hypothetical protein rb 86.4 1.1 3.9E-05 37.6 5.9 34 41-74 20-55 (201)
44 3ug7_A Arsenical pump-driving 85.3 1 3.5E-05 41.8 5.4 38 41-78 23-63 (349)
45 3fkq_A NTRC-like two-domain pr 85.0 0.85 2.9E-05 42.7 4.8 36 41-76 141-179 (373)
46 3end_A Light-independent proto 84.9 0.99 3.4E-05 40.8 5.1 34 41-74 39-74 (307)
47 2px0_A Flagellar biosynthesis 84.9 1 3.5E-05 40.8 5.1 35 42-76 104-141 (296)
48 1a7j_A Phosphoribulokinase; tr 84.7 0.74 2.5E-05 41.6 4.0 31 41-71 3-35 (290)
49 3kl4_A SRP54, signal recogniti 83.6 1.2 4.3E-05 42.5 5.3 34 43-76 97-132 (433)
50 3c8u_A Fructokinase; YP_612366 83.5 1.6 5.4E-05 36.9 5.5 33 41-73 20-54 (208)
51 2obn_A Hypothetical protein; s 83.1 1.2 4.2E-05 41.2 4.8 107 42-149 151-289 (349)
52 3zq6_A Putative arsenical pump 83.0 1.3 4.5E-05 40.5 5.1 34 44-77 14-50 (324)
53 2afh_E Nitrogenase iron protei 82.5 1.3 4.4E-05 39.6 4.7 32 43-74 2-35 (289)
54 1np6_A Molybdopterin-guanine d 82.3 1.9 6.4E-05 35.7 5.3 34 42-75 5-40 (174)
55 1cp2_A CP2, nitrogenase iron p 82.2 1.2 4.2E-05 39.1 4.4 31 44-74 2-34 (269)
56 2woo_A ATPase GET3; tail-ancho 82.0 1.3 4.4E-05 40.7 4.6 34 44-77 19-55 (329)
57 3ez2_A Plasmid partition prote 81.8 1.5 5.2E-05 41.3 5.2 34 41-74 106-148 (398)
58 3ez9_A Para; DNA binding, wing 81.8 0.86 2.9E-05 43.1 3.4 34 41-74 109-151 (403)
59 3pg5_A Uncharacterized protein 81.2 0.84 2.9E-05 42.6 3.1 32 43-74 1-35 (361)
60 3b9q_A Chloroplast SRP recepto 81.0 1.9 6.3E-05 39.2 5.2 34 43-76 100-135 (302)
61 1kyq_A Met8P, siroheme biosynt 80.8 0.16 5.5E-06 45.6 -1.9 64 3-67 108-183 (274)
62 2z0h_A DTMP kinase, thymidylat 80.6 1.6 5.3E-05 36.2 4.3 29 45-73 2-32 (197)
63 3e70_C DPA, signal recognition 79.6 2.3 7.8E-05 39.1 5.4 35 42-76 128-164 (328)
64 2f1r_A Molybdopterin-guanine d 78.9 1.9 6.5E-05 35.5 4.2 33 43-75 2-36 (171)
65 2og2_A Putative signal recogni 78.2 2.5 8.6E-05 39.3 5.2 35 42-76 156-192 (359)
66 1nn5_A Similar to deoxythymidy 77.4 2.4 8.2E-05 35.6 4.5 31 42-72 8-40 (215)
67 2woj_A ATPase GET3; tail-ancho 77.0 2.2 7.4E-05 39.6 4.4 35 43-77 17-56 (354)
68 2pbr_A DTMP kinase, thymidylat 76.9 2.5 8.6E-05 34.7 4.5 29 45-73 2-32 (195)
69 3dm5_A SRP54, signal recogniti 75.7 2.8 9.7E-05 40.1 4.9 34 43-76 100-135 (443)
70 2yhs_A FTSY, cell division pro 75.1 3.4 0.00012 40.2 5.3 35 42-76 292-328 (503)
71 2xxa_A Signal recognition part 75.1 3.4 0.00012 39.5 5.3 33 42-74 99-134 (433)
72 3iqw_A Tail-anchored protein t 74.7 2.6 9E-05 38.8 4.3 29 50-78 25-53 (334)
73 2pez_A Bifunctional 3'-phospho 74.7 3.3 0.00011 33.8 4.6 31 42-72 4-36 (179)
74 3uie_A Adenylyl-sulfate kinase 74.0 4.7 0.00016 33.6 5.5 31 41-71 23-55 (200)
75 2wwf_A Thymidilate kinase, put 73.9 3.1 0.00011 34.8 4.3 31 42-72 9-41 (212)
76 3kjh_A CO dehydrogenase/acetyl 72.7 1.5 5.1E-05 37.8 2.0 26 49-74 8-33 (254)
77 1ls1_A Signal recognition part 72.5 4.3 0.00015 36.5 5.1 34 43-76 98-133 (295)
78 2i3b_A HCR-ntpase, human cance 72.5 2.8 9.4E-05 35.1 3.6 25 45-69 3-29 (189)
79 1nks_A Adenylate kinase; therm 71.5 4 0.00014 33.4 4.4 30 44-73 2-33 (194)
80 1uj2_A Uridine-cytidine kinase 70.8 2.6 8.7E-05 36.8 3.1 25 42-66 21-47 (252)
81 2if2_A Dephospho-COA kinase; a 70.8 2.2 7.7E-05 35.6 2.7 25 44-72 2-28 (204)
82 1zuh_A Shikimate kinase; alpha 70.5 3.3 0.00011 33.3 3.6 25 41-65 5-31 (168)
83 2grj_A Dephospho-COA kinase; T 69.6 3.3 0.00011 34.7 3.4 28 42-72 11-40 (192)
84 2yvu_A Probable adenylyl-sulfa 69.6 6.7 0.00023 32.1 5.4 31 42-72 12-44 (186)
85 1odf_A YGR205W, hypothetical 3 69.1 4.1 0.00014 36.6 4.2 29 41-69 29-59 (290)
86 3tr0_A Guanylate kinase, GMP k 68.9 3.3 0.00011 34.5 3.3 24 42-65 6-31 (205)
87 3aez_A Pantothenate kinase; tr 68.8 3.9 0.00013 37.2 4.0 28 41-68 88-117 (312)
88 3pzx_A Formate--tetrahydrofola 68.6 5.5 0.00019 38.5 5.0 60 15-74 17-94 (557)
89 2p67_A LAO/AO transport system 67.8 5.6 0.00019 36.5 4.9 36 41-76 54-91 (341)
90 2vo1_A CTP synthase 1; pyrimid 67.4 6.6 0.00023 34.7 4.9 34 41-74 21-58 (295)
91 3tqc_A Pantothenate kinase; bi 67.2 6.5 0.00022 35.9 5.1 25 43-67 92-118 (321)
92 1rj9_A FTSY, signal recognitio 67.0 7.4 0.00025 35.1 5.4 34 43-76 102-137 (304)
93 1j8m_F SRP54, signal recogniti 66.8 5.9 0.0002 35.7 4.7 34 43-76 98-133 (297)
94 1m7g_A Adenylylsulfate kinase; 66.7 9.6 0.00033 31.9 5.9 32 41-72 23-57 (211)
95 1jjv_A Dephospho-COA kinase; P 66.7 3.4 0.00012 34.5 2.9 20 44-63 3-24 (206)
96 3a4m_A L-seryl-tRNA(SEC) kinas 66.6 5.8 0.0002 34.7 4.6 32 42-73 3-36 (260)
97 3ake_A Cytidylate kinase; CMP 66.6 4.3 0.00015 33.8 3.6 22 44-65 3-26 (208)
98 2j37_W Signal recognition part 66.5 6.1 0.00021 38.5 5.1 35 42-76 100-136 (504)
99 3p32_A Probable GTPase RV1496/ 65.7 6.7 0.00023 36.2 5.0 36 41-76 77-114 (355)
100 2ffh_A Protein (FFH); SRP54, s 65.2 6.7 0.00023 37.3 4.9 34 43-76 98-133 (425)
101 2jeo_A Uridine-cytidine kinase 64.2 5.3 0.00018 34.5 3.8 24 42-65 24-49 (245)
102 1ihu_A Arsenical pump-driving 63.6 8.6 0.00029 38.1 5.6 33 42-74 7-41 (589)
103 4i1u_A Dephospho-COA kinase; s 63.6 5.6 0.00019 33.9 3.7 28 41-72 7-36 (210)
104 4eun_A Thermoresistant glucoki 63.4 6 0.0002 33.0 3.8 24 42-65 28-53 (200)
105 2qm8_A GTPase/ATPase; G protei 62.8 9.3 0.00032 35.0 5.3 36 41-76 53-90 (337)
106 3kb2_A SPBC2 prophage-derived 62.6 5.8 0.0002 31.7 3.5 22 44-65 2-25 (173)
107 3asz_A Uridine kinase; cytidin 62.5 5.1 0.00017 33.5 3.3 25 42-66 5-31 (211)
108 1ye8_A Protein THEP1, hypothet 62.3 5.8 0.0002 32.7 3.5 22 45-66 2-25 (178)
109 3a00_A Guanylate kinase, GMP k 62.3 3.6 0.00012 34.0 2.2 23 44-66 2-26 (186)
110 2c5m_A CTP synthase; cytidine 61.5 8.6 0.00029 33.8 4.4 34 41-74 21-58 (294)
111 3lnc_A Guanylate kinase, GMP k 61.1 4.5 0.00015 34.6 2.7 25 42-66 26-53 (231)
112 3hjn_A DTMP kinase, thymidylat 60.6 9.3 0.00032 31.9 4.6 29 46-74 3-33 (197)
113 4edh_A DTMP kinase, thymidylat 59.5 11 0.00037 32.0 4.8 31 43-73 6-38 (213)
114 2j41_A Guanylate kinase; GMP, 59.2 5.1 0.00017 33.2 2.7 24 42-65 5-30 (207)
115 1uf9_A TT1252 protein; P-loop, 58.7 6 0.00021 32.6 3.0 28 41-72 6-35 (203)
116 2eyu_A Twitching motility prot 58.7 9.8 0.00033 33.5 4.5 28 41-68 23-52 (261)
117 3io3_A DEHA2D07832P; chaperone 58.5 7.5 0.00026 35.9 3.9 36 43-78 18-57 (348)
118 2plr_A DTMP kinase, probable t 58.0 8.6 0.00029 31.9 3.9 27 43-69 4-32 (213)
119 2v3c_C SRP54, signal recogniti 57.7 6.6 0.00023 37.5 3.4 33 44-76 100-134 (432)
120 1cke_A CK, MSSA, protein (cyti 57.4 9 0.00031 32.3 4.0 23 43-65 5-29 (227)
121 1xx6_A Thymidine kinase; NESG, 57.3 15 0.00053 30.5 5.3 34 42-75 7-42 (191)
122 1kht_A Adenylate kinase; phosp 56.9 13 0.00043 30.2 4.7 27 44-70 4-32 (192)
123 2w0m_A SSO2452; RECA, SSPF, un 55.8 14 0.00047 31.0 4.9 35 42-76 22-58 (235)
124 2c95_A Adenylate kinase 1; tra 55.7 8.8 0.0003 31.4 3.6 24 42-65 8-33 (196)
125 2pt5_A Shikimate kinase, SK; a 55.3 9 0.00031 30.5 3.5 21 45-65 2-24 (168)
126 1sq5_A Pantothenate kinase; P- 55.2 13 0.00044 33.5 4.8 25 42-66 79-105 (308)
127 3tau_A Guanylate kinase, GMP k 55.1 9.3 0.00032 32.0 3.7 26 41-66 6-33 (208)
128 1yrb_A ATP(GTP)binding protein 55.0 13 0.00045 32.0 4.8 32 42-74 13-46 (262)
129 1q3t_A Cytidylate kinase; nucl 53.5 11 0.00038 32.2 3.9 28 42-72 15-44 (236)
130 2www_A Methylmalonic aciduria 53.4 17 0.00057 33.4 5.4 35 42-76 73-109 (349)
131 1e6c_A Shikimate kinase; phosp 53.3 8.8 0.0003 30.7 3.1 22 44-65 3-26 (173)
132 2f6r_A COA synthase, bifunctio 53.3 7.8 0.00027 34.4 3.0 22 42-63 74-97 (281)
133 4ehx_A Tetraacyldisaccharide 4 53.3 9 0.00031 34.8 3.4 28 42-69 35-66 (315)
134 1ukz_A Uridylate kinase; trans 53.1 8.8 0.0003 31.8 3.2 25 41-65 13-39 (203)
135 2iyv_A Shikimate kinase, SK; t 53.1 7.7 0.00026 31.6 2.7 22 44-65 3-26 (184)
136 3ld9_A DTMP kinase, thymidylat 53.0 12 0.0004 32.2 3.9 32 42-73 20-54 (223)
137 1gtv_A TMK, thymidylate kinase 51.3 5.1 0.00017 33.5 1.3 28 45-72 2-31 (214)
138 1knq_A Gluconate kinase; ALFA/ 50.8 14 0.00046 29.7 3.9 24 42-65 7-32 (175)
139 1kag_A SKI, shikimate kinase I 50.7 8 0.00027 31.0 2.4 23 44-66 5-29 (173)
140 2qt1_A Nicotinamide riboside k 50.6 9.3 0.00032 31.8 2.9 24 42-65 20-45 (207)
141 1qf9_A UMP/CMP kinase, protein 50.6 12 0.00041 30.4 3.6 22 44-65 7-30 (194)
142 4tmk_A Protein (thymidylate ki 50.3 18 0.00063 30.6 4.8 28 43-70 3-32 (213)
143 3igf_A ALL4481 protein; two-do 49.5 7.2 0.00025 36.4 2.1 28 50-77 11-38 (374)
144 2jaq_A Deoxyguanosine kinase; 49.2 13 0.00043 30.6 3.5 22 45-66 2-25 (205)
145 3jvv_A Twitching mobility prot 49.2 15 0.0005 34.0 4.2 27 42-68 122-150 (356)
146 3lv8_A DTMP kinase, thymidylat 49.0 19 0.00067 31.0 4.8 29 43-71 27-57 (236)
147 3t61_A Gluconokinase; PSI-biol 48.9 13 0.00044 30.7 3.5 24 42-65 17-42 (202)
148 1y63_A LMAJ004144AAA protein; 48.9 14 0.00049 30.1 3.7 23 42-64 9-33 (184)
149 3vaa_A Shikimate kinase, SK; s 48.8 14 0.00049 30.5 3.8 24 42-65 24-49 (199)
150 1lvg_A Guanylate kinase, GMP k 48.8 11 0.00037 31.4 3.0 24 43-66 4-29 (198)
151 1znw_A Guanylate kinase, GMP k 47.9 12 0.0004 31.3 3.1 25 42-66 19-45 (207)
152 3lw7_A Adenylate kinase relate 47.7 14 0.00049 29.1 3.5 26 44-73 2-29 (179)
153 2bwj_A Adenylate kinase 5; pho 47.5 13 0.00044 30.4 3.3 23 43-65 12-36 (199)
154 4eaq_A DTMP kinase, thymidylat 47.3 14 0.00048 31.6 3.5 31 42-73 25-57 (229)
155 1vht_A Dephospho-COA kinase; s 47.2 13 0.00046 31.1 3.4 21 43-63 4-26 (218)
156 2v54_A DTMP kinase, thymidylat 47.1 15 0.00053 30.1 3.7 23 43-65 4-28 (204)
157 2b8t_A Thymidine kinase; deoxy 46.8 25 0.00085 30.1 5.1 34 42-75 11-46 (223)
158 3ec2_A DNA replication protein 46.8 39 0.0013 27.1 6.1 31 42-72 37-70 (180)
159 2r8r_A Sensor protein; KDPD, P 46.7 17 0.00059 31.2 4.0 29 46-74 11-39 (228)
160 1tev_A UMP-CMP kinase; ploop, 46.6 15 0.0005 29.9 3.5 22 44-65 4-27 (196)
161 3do6_A Formate--tetrahydrofola 46.4 23 0.00078 34.1 5.0 41 33-73 32-79 (543)
162 2vli_A Antibiotic resistance p 46.0 9.3 0.00032 30.9 2.1 24 42-65 4-29 (183)
163 1cr0_A DNA primase/helicase; R 45.6 25 0.00084 31.1 5.1 33 42-74 34-69 (296)
164 2kjq_A DNAA-related protein; s 45.4 26 0.00088 27.6 4.7 30 43-72 36-67 (149)
165 2ewv_A Twitching motility prot 44.9 20 0.00068 33.2 4.5 28 41-68 134-163 (372)
166 1dek_A Deoxynucleoside monopho 44.9 14 0.00048 32.1 3.1 21 44-64 2-24 (241)
167 3v9p_A DTMP kinase, thymidylat 44.7 18 0.00063 31.0 3.9 32 42-73 24-61 (227)
168 1kgd_A CASK, peripheral plasma 44.2 16 0.00053 29.7 3.3 25 42-66 4-30 (180)
169 2orw_A Thymidine kinase; TMTK, 44.2 26 0.00087 28.8 4.6 32 43-74 3-36 (184)
170 3trf_A Shikimate kinase, SK; a 44.0 18 0.00062 29.2 3.7 23 43-65 5-29 (185)
171 1aky_A Adenylate kinase; ATP:A 44.0 19 0.00064 30.2 3.8 24 42-65 3-28 (220)
172 3nva_A CTP synthase; rossman f 43.6 27 0.00091 34.1 5.1 32 43-74 3-38 (535)
173 4e22_A Cytidylate kinase; P-lo 43.4 17 0.00057 31.6 3.5 25 41-65 25-51 (252)
174 3cm0_A Adenylate kinase; ATP-b 42.9 17 0.00057 29.4 3.2 23 43-65 4-28 (186)
175 3hdt_A Putative kinase; struct 42.8 17 0.00059 31.0 3.4 33 37-72 8-42 (223)
176 4a0g_A Adenosylmethionine-8-am 42.7 19 0.00065 37.4 4.3 33 42-74 33-73 (831)
177 2cdn_A Adenylate kinase; phosp 41.8 24 0.0008 29.1 4.1 23 43-65 20-44 (201)
178 1via_A Shikimate kinase; struc 41.7 16 0.00055 29.3 2.9 22 44-65 5-28 (175)
179 1x6v_B Bifunctional 3'-phospho 39.7 38 0.0013 33.9 5.8 32 42-73 51-84 (630)
180 2rhm_A Putative kinase; P-loop 39.3 21 0.00073 28.9 3.4 23 43-65 5-29 (193)
181 1qhx_A CPT, protein (chloramph 39.0 18 0.00062 28.9 2.9 23 44-66 4-28 (178)
182 1nij_A Hypothetical protein YJ 38.9 16 0.00055 33.0 2.7 30 42-73 3-34 (318)
183 2j9r_A Thymidine kinase; TK1, 38.2 46 0.0016 28.2 5.3 34 42-75 27-62 (214)
184 1htw_A HI0065; nucleotide-bind 38.0 22 0.00075 28.5 3.1 25 41-65 31-57 (158)
185 2gks_A Bifunctional SAT/APS ki 38.0 32 0.0011 33.7 4.9 30 43-72 372-403 (546)
186 3iij_A Coilin-interacting nucl 37.2 24 0.00084 28.3 3.4 24 42-65 10-35 (180)
187 3lfu_A DNA helicase II; SF1 he 37.2 19 0.00065 35.8 3.2 28 42-70 24-52 (647)
188 1g8f_A Sulfate adenylyltransfe 37.0 43 0.0015 32.5 5.6 51 17-67 360-421 (511)
189 3ch4_B Pmkase, phosphomevalona 36.5 21 0.00073 30.1 2.9 26 41-66 9-36 (202)
190 3kta_A Chromosome segregation 36.4 19 0.00066 29.0 2.6 23 44-66 27-51 (182)
191 1m8p_A Sulfate adenylyltransfe 36.2 33 0.0011 33.9 4.6 31 42-72 395-428 (573)
192 3upu_A ATP-dependent DNA helic 36.2 23 0.00079 33.8 3.5 26 45-70 47-74 (459)
193 1p9r_A General secretion pathw 35.5 41 0.0014 31.7 5.0 28 41-68 165-194 (418)
194 3fb4_A Adenylate kinase; psych 35.4 27 0.00092 29.0 3.5 21 45-65 2-24 (216)
195 4hlc_A DTMP kinase, thymidylat 32.7 40 0.0014 28.2 4.1 29 44-73 3-33 (205)
196 1z6g_A Guanylate kinase; struc 31.7 24 0.00083 29.7 2.5 24 42-65 22-47 (218)
197 1ly1_A Polynucleotide kinase; 31.0 31 0.0011 27.4 3.0 20 44-63 3-24 (181)
198 3nwj_A ATSK2; P loop, shikimat 30.8 32 0.0011 29.9 3.2 23 43-65 48-72 (250)
199 2nu8_B SCS-beta, succinyl-COA 30.6 2.5E+02 0.0086 25.9 9.6 36 306-343 351-386 (388)
200 1zp6_A Hypothetical protein AT 30.2 30 0.001 27.9 2.9 23 42-64 8-32 (191)
201 1ko7_A HPR kinase/phosphatase; 30.1 46 0.0016 30.1 4.2 58 4-61 83-164 (314)
202 1s96_A Guanylate kinase, GMP k 30.0 34 0.0011 29.0 3.1 25 42-66 15-41 (219)
203 3r20_A Cytidylate kinase; stru 29.9 41 0.0014 28.9 3.7 24 42-65 8-33 (233)
204 2bbw_A Adenylate kinase 4, AK4 29.8 42 0.0014 28.6 3.8 24 42-65 26-51 (246)
205 3tlx_A Adenylate kinase 2; str 29.8 41 0.0014 28.8 3.7 24 42-65 28-53 (243)
206 2h92_A Cytidylate kinase; ross 29.7 28 0.00095 29.0 2.6 22 44-65 4-27 (219)
207 2ehv_A Hypothetical protein PH 28.8 70 0.0024 26.8 5.1 22 42-63 29-52 (251)
208 2wsm_A Hydrogenase expression/ 28.7 52 0.0018 27.1 4.1 32 42-74 29-62 (221)
209 3dl0_A Adenylate kinase; phosp 28.4 32 0.0011 28.5 2.8 26 45-73 2-29 (216)
210 1h7n_A 5-aminolaevulinic acid 28.1 25 0.00086 31.9 2.0 37 328-364 239-276 (342)
211 2ocp_A DGK, deoxyguanosine kin 28.1 30 0.001 29.5 2.5 23 44-66 3-27 (241)
212 2v9p_A Replication protein E1; 27.8 52 0.0018 29.5 4.1 28 41-70 124-153 (305)
213 2olj_A Amino acid ABC transpor 27.8 40 0.0014 29.5 3.3 24 42-65 49-74 (263)
214 1ak2_A Adenylate kinase isoenz 27.2 53 0.0018 27.7 4.0 25 42-66 15-41 (233)
215 1zd8_A GTP:AMP phosphotransfer 27.0 33 0.0011 28.8 2.6 23 43-65 7-31 (227)
216 2w58_A DNAI, primosome compone 26.9 77 0.0026 25.7 4.9 30 44-73 55-86 (202)
217 1tue_A Replication protein E1; 26.4 64 0.0022 27.3 4.2 47 20-66 33-83 (212)
218 2onk_A Molybdate/tungstate ABC 26.3 45 0.0015 28.6 3.3 25 41-66 23-49 (240)
219 3b85_A Phosphate starvation-in 26.0 45 0.0015 27.9 3.2 24 42-66 21-46 (208)
220 4ag6_A VIRB4 ATPase, type IV s 26.0 41 0.0014 31.1 3.3 30 44-74 39-68 (392)
221 1s1m_A CTP synthase; CTP synth 25.9 68 0.0023 31.4 4.8 31 44-74 4-38 (545)
222 1pv8_A Delta-aminolevulinic ac 25.7 25 0.00084 31.8 1.5 36 329-364 229-265 (330)
223 1b0u_A Histidine permease; ABC 25.7 46 0.0016 29.0 3.3 25 42-66 31-57 (262)
224 2zu0_C Probable ATP-dependent 25.5 49 0.0017 28.9 3.5 23 42-64 45-69 (267)
225 2bdt_A BH3686; alpha-beta prot 25.4 44 0.0015 26.9 3.0 20 44-63 3-24 (189)
226 1vco_A CTP synthetase; tetrame 25.4 67 0.0023 31.5 4.7 31 44-74 13-47 (550)
227 3d3q_A TRNA delta(2)-isopenten 25.2 40 0.0014 30.9 2.9 23 44-66 8-32 (340)
228 2yz2_A Putative ABC transporte 24.9 48 0.0016 29.0 3.3 24 42-65 32-57 (266)
229 3be4_A Adenylate kinase; malar 24.9 47 0.0016 27.7 3.1 22 44-65 6-29 (217)
230 3fdi_A Uncharacterized protein 24.8 42 0.0014 27.9 2.8 27 43-72 6-34 (201)
231 2fp4_B Succinyl-COA ligase [GD 24.6 2.8E+02 0.0095 25.7 8.7 36 306-343 358-393 (395)
232 1ihu_A Arsenical pump-driving 24.5 52 0.0018 32.4 3.8 32 44-75 327-361 (589)
233 2xb4_A Adenylate kinase; ATP-b 24.2 54 0.0019 27.5 3.4 21 45-65 2-24 (223)
234 2pcj_A ABC transporter, lipopr 24.2 43 0.0015 28.3 2.8 24 42-65 29-54 (224)
235 4af8_A Metacaspase MCA2; hydro 24.1 65 0.0022 29.8 4.1 29 329-357 152-181 (367)
236 1vpl_A ABC transporter, ATP-bi 23.9 52 0.0018 28.6 3.3 24 42-65 40-65 (256)
237 1zak_A Adenylate kinase; ATP:A 23.8 49 0.0017 27.6 3.0 23 44-66 6-30 (222)
238 3euj_A Chromosome partition pr 23.7 55 0.0019 31.5 3.7 25 44-68 30-56 (483)
239 1w5q_A Delta-aminolevulinic ac 23.6 26 0.0009 31.6 1.3 36 329-364 237-273 (337)
240 2ze6_A Isopentenyl transferase 23.6 57 0.0019 28.1 3.5 22 44-65 2-25 (253)
241 3bij_A Uncharacterized protein 23.4 66 0.0023 28.4 4.0 50 308-357 32-87 (285)
242 2d2e_A SUFC protein; ABC-ATPas 23.3 54 0.0018 28.3 3.3 23 42-64 28-52 (250)
243 1l6s_A Porphobilinogen synthas 23.0 26 0.0009 31.4 1.1 34 329-362 223-257 (323)
244 3dfz_A SIRC, precorrin-2 dehyd 22.9 24 0.00081 30.3 0.8 65 3-68 93-164 (223)
245 1e4v_A Adenylate kinase; trans 22.6 54 0.0019 27.1 3.1 25 46-73 3-29 (214)
246 4a2c_A Galactitol-1-phosphate 22.6 1.8E+02 0.0063 25.8 7.0 36 266-302 227-262 (346)
247 2pjz_A Hypothetical protein ST 22.5 49 0.0017 28.9 2.8 23 43-65 30-54 (263)
248 2ixe_A Antigen peptide transpo 22.5 56 0.0019 28.6 3.3 25 42-66 44-70 (271)
249 1ji0_A ABC transporter; ATP bi 22.2 55 0.0019 28.0 3.1 24 42-65 31-56 (240)
250 1g6h_A High-affinity branched- 22.1 49 0.0017 28.7 2.7 25 42-66 32-58 (257)
251 3e1s_A Exodeoxyribonuclease V, 22.0 1.4E+02 0.0047 29.4 6.3 34 43-76 204-239 (574)
252 2qor_A Guanylate kinase; phosp 22.0 46 0.0016 27.4 2.4 24 42-65 11-36 (204)
253 2nq2_C Hypothetical ABC transp 22.0 57 0.0019 28.2 3.1 24 42-65 30-55 (253)
254 1mv5_A LMRA, multidrug resista 21.8 57 0.002 27.9 3.1 25 42-66 27-53 (243)
255 2yv5_A YJEQ protein; hydrolase 21.8 85 0.0029 27.9 4.4 41 22-65 139-188 (302)
256 2cbz_A Multidrug resistance-as 21.4 62 0.0021 27.6 3.3 24 42-65 30-55 (237)
257 2p5t_B PEZT; postsegregational 21.4 47 0.0016 28.5 2.5 25 42-66 31-57 (253)
258 2ghi_A Transport protein; mult 21.1 63 0.0021 28.1 3.3 24 42-65 45-70 (260)
259 1g5t_A COB(I)alamin adenosyltr 20.9 1.5E+02 0.0052 24.6 5.4 34 42-76 28-63 (196)
260 3czq_A Putative polyphosphate 20.9 35 0.0012 30.7 1.5 33 42-74 85-119 (304)
261 1lw7_A Transcriptional regulat 20.9 51 0.0017 30.2 2.7 24 43-66 170-195 (365)
262 2cok_A Poly [ADP-ribose] polym 20.9 31 0.001 26.1 1.0 31 2-32 48-78 (113)
263 3obk_A Delta-aminolevulinic ac 20.8 33 0.0011 31.2 1.3 35 329-363 244-279 (356)
264 2ihy_A ABC transporter, ATP-bi 20.7 62 0.0021 28.5 3.2 25 42-66 46-72 (279)
265 3out_A Glutamate racemase; str 20.6 2.3E+02 0.0079 24.6 6.9 46 25-72 94-139 (268)
266 2pjk_A 178AA long hypothetical 20.5 78 0.0027 25.8 3.5 46 308-353 41-90 (178)
267 3e2i_A Thymidine kinase; Zn-bi 20.5 1.2E+02 0.0041 25.7 4.7 33 42-74 27-61 (219)
268 1w1z_A Delta-aminolevulinic ac 20.4 26 0.0009 31.5 0.6 36 329-364 230-266 (328)
269 3qks_A DNA double-strand break 20.3 76 0.0026 26.2 3.5 25 43-67 23-49 (203)
270 1sgw_A Putative ABC transporte 20.3 54 0.0019 27.6 2.6 24 42-65 34-59 (214)
No 1
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=5e-71 Score=544.64 Aligned_cols=355 Identities=26% Similarity=0.398 Sum_probs=305.5
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccch
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~ 81 (377)
.++||+||+++++||++++|+++|+|+++++++++++. +.++|+||||||||||++||+++|+++|.++.++|++|.|
T Consensus 73 ~d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~ 150 (451)
T 3lk7_A 73 FCYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP 150 (451)
T ss_dssp EEEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSC
T ss_pred CCEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChh
Confidence 47899999999999999999999999999999999987 4599999999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEE
Q 017087 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (377)
++.... ...+.|++|+|+|+++++... .++|+++|||||++||+|+|||+|+|+++|++|++.+++++.+|+
T Consensus 151 ~~~~~~-------~~~~~d~~VlE~~s~~l~~~~-~~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~ 222 (451)
T 3lk7_A 151 ASEVVQ-------AANDKDTLVMELSSFQLMGVK-EFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVL 222 (451)
T ss_dssp HHHHTT-------TCCTTCEEEEECCHHHHTTCS-SCCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEE
T ss_pred hhhhhh-------cCCCCCEEEEECCcccccccc-ccCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 875432 123578999999999987653 489999999999999999999999999999999999888999999
Q ss_pred eCCChhhHHHHhccCcceeEeecCCCc-ccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCC
Q 017087 162 PFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (377)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi 240 (377)
|.|||....+.+....++++|+..... .... ....+.+. +. ..+....++++|.||++|+++|+ +++..+|+
T Consensus 223 n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~--~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi 295 (451)
T 3lk7_A 223 NFNQGISKELAKTTKATIVPFSTTEKVDGAYV--QDKQLFYK--GE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGI 295 (451)
T ss_dssp ETTSHHHHHHHTTCSSEEEEEESSSCCSSEEE--ETTEEEET--TE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTC
T ss_pred ECCcHHHHHHHhhcCCeEEEEccCCCcCCEEE--ECCEEEEC--Cc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCC
Confidence 999999988887767778888865322 0000 01122222 21 12234578999999999999999 88999999
Q ss_pred CHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC----------------
Q 017087 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK---------------- 304 (377)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~---------------- 304 (377)
+++.|+++|++|+++|||||++. ..+++.+|||||||||+|+.++++.++++|+++|+|++++
T Consensus 296 ~~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~r~~d~~~l~~~l~~~d~ 374 (451)
T 3lk7_A 296 SNQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDRGNEFDELIPDITGLKH 374 (451)
T ss_dssp CHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSCCSCCCGGGHHHHTTCSE
T ss_pred CHHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCCCCCCHHHHHHHHHhcCE
Confidence 99999999999999999999996 3678999999889999999999999875568999987652
Q ss_pred ---CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 305 ---FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 305 ---~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
.|++++.+.+.++..+. .+.+++|+++|++.+.+.+++||+||++|+|+||++|++|++||++|+++|++
T Consensus 375 vi~~G~~~~~l~~~~~~~g~--~~~~~~~~~eAv~~a~~~a~~gD~VLlspa~as~d~f~~~~~RG~~F~~~v~~ 447 (451)
T 3lk7_A 375 MVVLGESASRVKRAAQKAGV--TYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGDEFIDTFES 447 (451)
T ss_dssp EEECSTTHHHHHHHHHHTTC--CEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSSHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHhcCC--ceEEeCCHHHHHHHHHHhCCCCCEEEEcCcCcchhhhhCHHHHHHHHHHHHHH
Confidence 57788888888876654 46678999999999999999999999999999999999999999999999975
No 2
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=5.2e-65 Score=500.35 Aligned_cols=346 Identities=29% Similarity=0.429 Sum_probs=286.1
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchh
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (377)
++||++++++++||++..|+++++|++++++++++.+ +.++|+||||||||||++||+++|+++|++++++|++|.|+
T Consensus 66 d~vV~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gnig~~~ 143 (439)
T 2x5o_A 66 DLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPA 143 (439)
T ss_dssp SEEEECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBCH
T ss_pred CEEEeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecccCHHH
Confidence 6899999999999999999999999999999999987 47999999999999999999999999999999999999998
Q ss_pred hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhcccCCCCceEEE
Q 017087 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL 161 (377)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (377)
+.... .+.|++|+|+|+++++.+. .++|+++|||||++||+|+| +|+|+|+++|+++++. ++.+|+
T Consensus 144 ~~~~~---------~~~d~~VlE~~~~~l~~~~-~~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V~ 210 (439)
T 2x5o_A 144 LMLLD---------DECELYVLELSSFQLETTS-SLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVV 210 (439)
T ss_dssp HHHCC---------TTCCEEEEECCHHHHHTCC-CCCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEEE
T ss_pred HHHhC---------CCCCEEEEECCchhhcccc-cCCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEEE
Confidence 75421 2348999999998888654 48999999999999999999 7999999999999984 689999
Q ss_pred eCCChhhHHHHhccCcceeEeecCCC-cc-cccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcC
Q 017087 162 PFGNQHLNEAIKGHRFNLAWIGAFPG-VK-IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG 239 (377)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lg 239 (377)
|.|||....+... .+++++|+.... +. +... ...+.+. .+. ..+....++++|+||++|+++|+ +++..+|
T Consensus 211 n~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~l~l~G~hn~~NalaA~--a~~~~lg 283 (439)
T 2x5o_A 211 NADDALTMPIRGA-DERCVSFGVNMGDYHLNHQQ--GETWLRV-KGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAAG 283 (439)
T ss_dssp ETTCGGGSCSCCC-SSCCEEECSSSSSEEEEEET--TEEEEEE-TTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHTT
T ss_pred eCCCHHHHHHhhc-CCcEEEEeCCCcCcCcEEEE--CCEEEEe-CCc-EEEeehhcCCCCHHHHHHHHHHH--HHHHHcC
Confidence 9999987665543 456788875321 10 1000 0112221 111 11223478999999999999999 8899999
Q ss_pred CCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccC-CcEEEEecCCCCC-------------
Q 017087 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKF------------- 305 (377)
Q Consensus 240 i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~-~r~i~v~G~~~~~------------- 305 (377)
++++.|+++|++|+++|||||++. ..+++.+|||||||||+|++++++.++. +|+++|+|++++.
T Consensus 284 i~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~vi~Ds~a~np~a~~~al~~l~~~~~~i~v~g~~~k~~~~~~~~~~l~~~ 362 (439)
T 2x5o_A 284 LPRASSLKALTTFTGLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGD 362 (439)
T ss_dssp CCHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTCCCGGGGGGSCSS
T ss_pred CCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEEeCCCCCHHHHHHHHHhCCcCCCEEEEEcCCCCCCCHHHHHHHHHhh
Confidence 999999999999999999999996 3578899999889999999999999863 6899999987652
Q ss_pred -------CCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 306 -------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 306 -------g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
|++++.+.+ +... .+..++|+++|++.+.+.+++||+||++|+|+||++|++|++||+.|+++|++
T Consensus 363 ~d~vi~~g~~~~~~~~-~~~~----~~~~~~~~~~a~~~~~~~~~~gd~vL~~~a~~S~~~~~~~~~RG~~f~~~v~~ 435 (439)
T 2x5o_A 363 NVRLYCFGRDGAQLAA-LRPE----VAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKE 435 (439)
T ss_dssp SEEEEEESTTHHHHHT-TSGG----GEEECSSHHHHHHHHGGGCCTTCEEEECCSSBSTTTSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHH-HhcC----CccccCCHHHHHHHHHHhCCCCCEEEEcchhhHhhhhhCHHHHHHHHHHHHHH
Confidence 334444443 2110 23457899999999999999999999999999999999999999999999975
No 3
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=2e-59 Score=466.30 Aligned_cols=341 Identities=16% Similarity=0.235 Sum_probs=270.7
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCC-eeeeccccc
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGN 80 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~-~~~~g~~g~ 80 (377)
.++||+||+++++||++++|+++|+|+++++|++++++ +..++|+||||||||||++||+++|+++|.+ +...|.++.
T Consensus 82 ~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~ 160 (494)
T 4hv4_A 82 ASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELM-RYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVK 160 (494)
T ss_dssp CSEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHh-cCCCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccc
Confidence 37899999999999999999999999999999999988 4568999999999999999999999999985 333333322
Q ss_pred hhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhcccCCCCceE
Q 017087 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~ 159 (377)
++..... ..+.|++|+|+|+++..+ ..++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+
T Consensus 161 ~~g~~~~--------~~~~d~~VlE~~e~~~s~--~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~ 230 (494)
T 4hv4_A 161 AAGTHAR--------LGSSRYLIAEADESDASF--LHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 230 (494)
T ss_dssp TTTEEEE--------CCSSSEEEEECCCGGGGG--GGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEE
T ss_pred ccccccc--------cCCCcEEEEEcccccccc--ccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEE
Confidence 2221110 134689999999876543 357999999999999999999 79999999999999998888999
Q ss_pred EEeCCChhhHHHHhccCcceeEeecCCC--cccc---cccccceEEeccCCe-eEEEEeeccCCCChhHHHHHHHHHHHH
Q 017087 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVGV-VSQLQLHNMKVMGRHNYHNAAVAALSV 233 (377)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~-~~~~~~~~l~l~G~hn~~NalaA~~~a 233 (377)
|+|.|||....+......++++||...+ +... .+.....|.+...+. ... +.++++|+||++|+++|+ +
T Consensus 231 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a 305 (494)
T 4hv4_A 231 VMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIE---VTLNAPGRHNALNAAAAV--A 305 (494)
T ss_dssp EEETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEE---EEESSCSHHHHHHHHHHH--H
T ss_pred EEECCCHHHHHHHHhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEE---EEecCCcHHHHHHHHHHH--H
Confidence 9999999998888776677888886432 2111 011112233322221 122 368999999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCeeeEEeecc---------CCeEEEEcCCCCCHHHHHHHHhccc----CCcEEEEec
Q 017087 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---------QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLG 300 (377)
Q Consensus 234 ~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~---------~~~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G 300 (377)
++..+|++.+.|+++|++|+++|||||++.. . +++.+|||| ||||.++.++++.++ ++|+++|+|
T Consensus 306 ~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~-~~~~~~~~~~~g~~vi~Dy-aHnp~~i~a~l~al~~~~~~~rii~V~g 383 (494)
T 4hv4_A 306 VATEEGIEDEDILRALVGFQGTGRRFDFLGN-FPLAPVNGKEGSAMLVDDY-GHHPTEVDATIKAARAGWPDKRIVMLFQ 383 (494)
T ss_dssp HHHHHTCCHHHHHHHHHHCCCBTTSSEEEEE-EESHHHHSCSSEEEEEEEC-CCSHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHcCCCHHHHHHHHHhCCCCCCccEEeee-ccccccccCCCCeEEEEeC-CCCHHHHHHHHHHHHhhcCCCeEEEEEc
Confidence 8999999999999999999999999999963 3 489999996 999999998877652 458899998
Q ss_pred CCCC---------------------------------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCE
Q 017087 301 GQAK---------------------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDA 347 (377)
Q Consensus 301 ~~~~---------------------------------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdi 347 (377)
+... .|.++++|.+.++..+. ..+.+++|+++|++.+.+.+++||+
T Consensus 384 ~~~~~r~k~~~~~~~~~~~~aD~vilt~~~~~~e~p~~g~~~~~l~~~~~~~g~-~~~~~~~~~~eAv~~a~~~a~~gDv 462 (494)
T 4hv4_A 384 PHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGADSRALCRTIRNRGK-LDPILVPDSESAPEMLAQILNGEDL 462 (494)
T ss_dssp CBCHHHHHHTHHHHHHHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHHTTTS-CCCEEECCTTTHHHHHHHHCCTTEE
T ss_pred CCCCCchHHHHHHHHHHHhcCCEEEEeCCcCCccCCcCCccHHHHHHHHHhhCC-CCeEEeCCHHHHHHHHHHhCCCCCE
Confidence 6420 24566888888876542 2456789999999999999999999
Q ss_pred EEEcCCCcccccccC
Q 017087 348 IVLSPGCASFDEFRN 362 (377)
Q Consensus 348 vli~~g~~s~~~~~~ 362 (377)
||++ |+|||+.+.+
T Consensus 463 VL~~-GaG~~~~~~~ 476 (494)
T 4hv4_A 463 ILVQ-GAGNIGKIAR 476 (494)
T ss_dssp EEEE-CSSTHHHHHH
T ss_pred EEEE-CCCCHHHHHH
Confidence 9995 8899886644
No 4
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=8e-59 Score=464.81 Aligned_cols=352 Identities=19% Similarity=0.226 Sum_probs=260.8
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCee-eec----
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGG---- 76 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~-~~g---- 76 (377)
.++||+||+++++||++++|+++|+|++++++++++.+.+..++|+||||||||||++||+++|+++|++++ +.|
T Consensus 81 ~d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~ 160 (524)
T 3hn7_A 81 PDLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPL 160 (524)
T ss_dssp CSEEEECTTCCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBC
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEec
Confidence 478999999999999999999999999999999998532467899999999999999999999999998764 222
Q ss_pred ----------cccchhhhhhhhcccCC---CCCCCccEEEEEeCccccccC---C--ccccccEEEEecCCcchhcCCCC
Q 017087 77 ----------NLGNPLSEAAFHCIALP---SSKPKFQVAVVEVSSYQMEIP---N--KYFCPTVSVVLNLTPDHLERHKT 138 (377)
Q Consensus 77 ----------~~g~~~~~~~~~~~~~~---~~~~~~~~~ViE~~~~~l~~~---~--~~~~p~i~ViTni~~dHl~~~gt 138 (377)
++|.+.... ..+ ....+.+++|+|+|+++.... . ..++|+++|||||++||+|+|||
T Consensus 161 ~~~T~~nln~~ig~~~~~~-----~~~~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~gs 235 (524)
T 3hn7_A 161 VNTTDTNLQQVFAHSSYLG-----TEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFAD 235 (524)
T ss_dssp CCSSCHHHHHHTTSSEECC-----CCCCSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC------C
T ss_pred cccCchhhhhhhhhHHhhC-----CCcccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccCC
Confidence 122221100 000 001346799999999875421 1 13799999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhc-cCcceeEeecCC----------------------Cccccc-cc
Q 017087 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFP----------------------GVKIDT-EA 194 (377)
Q Consensus 139 ~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~-~~ 194 (377)
+|+|+++|.++++.+++++.+|+|.|||.+..+... ...++++||... ++.... ..
T Consensus 236 ~e~y~~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~ 315 (524)
T 3hn7_A 236 LDAIQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISA 315 (524)
T ss_dssp HHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEET
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEEC
Confidence 999999999999999889999999999999887643 345677887531 111000 00
Q ss_pred ccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEc
Q 017087 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDD 274 (377)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD 274 (377)
....|.+...+....+..+.++++|.||++|+++|+ +++..+|++.+.|+++|++|+++|||||++. ..+++.+|||
T Consensus 316 ~g~~f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D 392 (524)
T 3hn7_A 316 DGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAI--AAAYNIGVSVKTACAALSAFAGIKRRMELIG-DVNDILVFDD 392 (524)
T ss_dssp TTTEEEEEETTEEEEEEEEECSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EETTEEEEEE
T ss_pred CceEEEEEECCccceeEEEEeCCCcHHHHHhHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCceEEEEE-ecCCcEEEEE
Confidence 112333322222100223579999999999999999 8899999999999999999999999999996 3578999999
Q ss_pred CCCCCHHHHHHHHhccc----CCcEEEEecCCC---C--------------------CC-----CChHHHHHHHHhCCC-
Q 017087 275 SKATNLEATCTGLMDLK----GHKCVILLGGQA---K--------------------FG-----YSGVLIWKTLVNNGL- 321 (377)
Q Consensus 275 ~~a~np~s~~~al~~~~----~~r~i~v~G~~~---~--------------------~g-----~~~~~i~~~l~~~g~- 321 (377)
| +|||+++.++++.++ ++|+++|+|++. + .| ++++++.+.+.....
T Consensus 393 ~-ahnp~~~~a~l~~l~~~~~~~r~i~V~g~~~~~~~~g~~~~~~~~~~~~aD~vil~~~~~r~~~~~~l~~~~~~~~~~ 471 (524)
T 3hn7_A 393 F-AHHPTAITTTLDGAKKKLADRRLWAIIEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLEWGLKEVIDNATIANPS 471 (524)
T ss_dssp C-CCSHHHHHHHHHHHHHHHTTSCEEEEEECCCCSSCCSCCTTHHHHHTTTSSEEEEECCTTCCCSHHHHHHHHHHHCGG
T ss_pred C-CCCHHHHHHHHHHHHhhcCCCCEEEEECCCCcchhhhhhHHHHHHHHhcCCEEEEcCCCCCCCCHHHHHHHHHhhccC
Confidence 8 899999999887663 468999999741 1 11 234556665532100
Q ss_pred CCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccCh
Q 017087 322 SIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNF 363 (377)
Q Consensus 322 ~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~ 363 (377)
...+.+++|+++|++.+.+.+++||+||++ |+|||+.+..-
T Consensus 472 ~~~~~~~~~~~eai~~~~~~a~~gD~VLv~-GaG~~~~v~~~ 512 (524)
T 3hn7_A 472 IGSQQVLSSVDDIIKHICTHAKAGDAIVIM-SNGGFEGIHQR 512 (524)
T ss_dssp GCCEEEESCHHHHHHHHHHHCCTTCEEEEE-ESSCGGGHHHH
T ss_pred CCCeEEECCHHHHHHHHHHhCCCCCEEEEE-cCCCHHHHHHH
Confidence 124567899999999999999999999995 89999887653
No 5
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=2.5e-56 Score=442.81 Aligned_cols=340 Identities=17% Similarity=0.215 Sum_probs=267.3
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCC-ee-eeccccc
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AF-VGGNLGN 80 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~-~~-~~g~~g~ 80 (377)
++||++++++++||++++|++.++|++++.+++.+++ +..++|+||||||||||++||+++|+++|++ +. ++|+++.
T Consensus 79 ~~vv~s~~i~~~~~~~~~a~~~~i~vl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~ 157 (475)
T 1p3d_A 79 SVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS 157 (475)
T ss_dssp SEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCcccc
Confidence 5799999999999999999999999999999999887 4578999999999999999999999999986 33 4666553
Q ss_pred hhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhcccCCCCceE
Q 017087 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~ 159 (377)
+.... ...+.|++|+|+|+.+... ..++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+
T Consensus 158 ~~~~~---------~~~~~d~~VlE~~~~~~~~--~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 226 (475)
T 1p3d_A 158 AGKNA---------HLGASRYLIAEADESDASF--LHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 226 (475)
T ss_dssp TTEEE---------ECCSSSEEEEECCCTTSGG--GGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ccccc---------ccCCCCEEEEEecCCcCcc--ccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence 21111 1235689999999765432 347899999999999999999 79999999999999988888999
Q ss_pred EEeCCChhhHHHHhccCcceeEeecCCC--cccc---cccccceEEeccCC-eeEEEEeeccCCCChhHHHHHHHHHHHH
Q 017087 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSV 233 (377)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~l~G~hn~~NalaA~~~a 233 (377)
|+|.|||....+......++++|+...+ +... .+.....|.+...+ ... .+.++++|+||++|+++|+ +
T Consensus 227 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a 301 (475)
T 1p3d_A 227 VMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERI---NVLLNVPGKHNALNATAAL--A 301 (475)
T ss_dssp EEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEE---EEEESSCSHHHHHHHHHHH--H
T ss_pred EEECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEE---EEEEcCccHHHHHHHHHHH--H
Confidence 9999999988877655567788886432 2111 01111233332211 111 2478999999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCeeeEEeecc----CCeEEEEcCCCCCHHHHHHHHhccc----CCcEEEEecCCC--
Q 017087 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI----QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQA-- 303 (377)
Q Consensus 234 ~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~----~~~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G~~~-- 303 (377)
++..+|++.+.|+++|++|+++|||||++.. . +++.+|||| ||||++++++++.+. ++|+++|+|++.
T Consensus 302 ~~~~lgi~~~~i~~~L~~f~~~~gR~e~v~~-~~~~~~~~~vi~Dy-aHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~~ 379 (475)
T 1p3d_A 302 VAKEEGIANEAILEALADFQGAGRRFDQLGE-FIRPNGKVRLVDDY-GHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYS 379 (475)
T ss_dssp HHHHTTCCHHHHHHHHHTCCCBTTSSEEEEE-EEETTEEEEEEEEC-CCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHH
T ss_pred HHHHcCCCHHHHHHHHHhCCCCCCCCEEEec-ccccCCCcEEEEeC-CCCHHHHHHHHHHHHhhcCCCeEEEEECCCCCc
Confidence 8999999999999999999999999999963 2 378999995 999999998877663 368899998632
Q ss_pred C-------------------------C------CCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcC
Q 017087 304 K-------------------------F------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSP 352 (377)
Q Consensus 304 ~-------------------------~------g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~ 352 (377)
+ . |.+++.+.+.+...+. ..+..++|+++|++.+.+.+++||+||++
T Consensus 380 r~~~~~~~~~~~~~~~d~vi~t~~~~~~e~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~ai~~a~~~a~~gd~VLv~- 457 (475)
T 1p3d_A 380 RTRDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGK-VDPILVSDTSQLGDVLDQIIQDGDLILAQ- 457 (475)
T ss_dssp HHHHTHHHHHHHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHHHHTS-CCCEEESCGGGHHHHHHHHCCTTCEEEEE-
T ss_pred cHHHHHHHHHHHHHhCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCC-CceEEECCHHHHHHHHHHhCCCCCEEEEE-
Confidence 0 1 4566778877764321 13455789999999999999999999985
Q ss_pred CCcccccccCh
Q 017087 353 GCASFDEFRNF 363 (377)
Q Consensus 353 g~~s~~~~~~~ 363 (377)
|+|||+.+.+.
T Consensus 458 G~Gs~~~v~~~ 468 (475)
T 1p3d_A 458 GAGSVSKISRG 468 (475)
T ss_dssp CSSTHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88999877553
No 6
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=8.8e-56 Score=440.39 Aligned_cols=341 Identities=17% Similarity=0.223 Sum_probs=261.5
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCC-ee-eeccccc
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AF-VGGNLGN 80 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~-~~-~~g~~g~ 80 (377)
++||++++++++||++.+|++.++|++++.+++.+++ +..++|+||||||||||++||+++|+++|++ +. ++|+++.
T Consensus 80 ~~vv~s~~i~~~~p~~~~a~~~~ipvl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~ 158 (491)
T 2f00_A 80 SVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELM-RFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKA 158 (491)
T ss_dssp SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCeecc
Confidence 5799999999999999999999999999999999888 4578999999999999999999999999986 33 5666553
Q ss_pred hhhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhcccCCCCceE
Q 017087 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~ 159 (377)
+.... ...+.|++|+|+|+.+... ..++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+
T Consensus 159 ~~~~~---------~~~~~d~~VlE~~~~~~~~--~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 227 (491)
T 2f00_A 159 AGVHA---------RLGHGRYLIAEADESDASF--LHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 227 (491)
T ss_dssp TTEEE---------ECCSSSEEEEECCCTTSGG--GGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ccccc---------cCCCCCEEEEEeCCCccch--hcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence 22111 1235689999999765432 247899999999999999999 79999999999999988888999
Q ss_pred EEeCCChhhHHHHhccCcceeEeecCCC--cccc---cccccceEEeccCC-eeEEEEeeccCCCChhHHHHHHHHHHHH
Q 017087 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPG--VKID---TEAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSV 233 (377)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~l~G~hn~~NalaA~~~a 233 (377)
|+|.|||....+......++++|+...+ +... .+.....|.+...+ ... .+.++++|+||++|+++|+ +
T Consensus 228 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a 302 (491)
T 2f00_A 228 VMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPM---RVTLNAPGRHNALNAAAAV--A 302 (491)
T ss_dssp EEETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCE---EEEESSCSHHHHHHHHHHH--H
T ss_pred EEECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEE---EEEEccchHHHHHHHHHHH--H
Confidence 9999999988887765567888886432 2111 01111223332211 111 2368999999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCeeeEEeecc-------CC-eEEEEcCCCCCHHHHHHHHhccc----CCcEEEEecC
Q 017087 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI-------QG-VTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG 301 (377)
Q Consensus 234 ~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~-------~~-~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G~ 301 (377)
++..+|++.+.|+++|++|+++|||||++.... ++ +.+|||| ||||.++.++++.+. ++|+++|+|+
T Consensus 303 ~a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~Dy-aHnp~~~~a~l~al~~~~~~~~i~~v~g~ 381 (491)
T 2f00_A 303 VATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDY-GHHPTEVDATIKAARAGWPDKNLVMLFQP 381 (491)
T ss_dssp HHHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEEC-CCSHHHHHHHHHHHHTTCCSSEEEEEECC
T ss_pred HHHHcCCCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEeC-CCCHHHHHHHHHHHHhhcCCCeEEEEECC
Confidence 899999999999999999999999999996311 37 8999995 999999998877663 3578899986
Q ss_pred CC----C-----------------------C------CCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEE
Q 017087 302 QA----K-----------------------F------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAI 348 (377)
Q Consensus 302 ~~----~-----------------------~------g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdiv 348 (377)
+. + . |.+++.+.+.+...+. ..+..++|+++|++.+.+.+++||+|
T Consensus 382 ~~~~r~k~~~~~~~~~~~~~d~vilt~~~~~~e~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~ai~~a~~~a~~gd~V 460 (491)
T 2f00_A 382 HRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGK-IDPILVPDPARVAEMLAPVLTGNDLI 460 (491)
T ss_dssp BCHHHHTTTHHHHHHHHTTSSEEEECCCBCSSSCCCTTSSHHHHTTC--------CCEECCCSSCCHHHHGGGCCSEEEE
T ss_pred CCCcchHHHHHHHHHHHHhCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCC-CceEEeCCHHHHHHHHHHhCCCCCEE
Confidence 31 0 1 3344555544432211 12345689999999999999999999
Q ss_pred EEcCCCcccccccCh
Q 017087 349 VLSPGCASFDEFRNF 363 (377)
Q Consensus 349 li~~g~~s~~~~~~~ 363 (377)
|++ |++||+.+.+.
T Consensus 461 Lv~-gaGsl~~v~~~ 474 (491)
T 2f00_A 461 LVQ-GAGNIGKIARS 474 (491)
T ss_dssp EEE-CSTTHHHHHHH
T ss_pred EEE-CCCCHHHHHHH
Confidence 985 78888876553
No 7
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=6.3e-56 Score=437.68 Aligned_cols=305 Identities=19% Similarity=0.219 Sum_probs=232.5
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc----ccchhhhhhhhcccCCCCCCCccEEEEEeCcccc-c--cC
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM-E--IP 114 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l-~--~~ 114 (377)
+.++|+||||||||||++||+++|+++|..+.+.|+ +|.|.+...+ ..++|++|+|+|+++. + ..
T Consensus 99 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~s~g~~n~~ig~p~t~~~~--------~~~~d~~VlE~g~~~~~~~~~~ 170 (454)
T 2am1_A 99 TVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHM--------PEGTEKLVLEMGQDHLGDIHLL 170 (454)
T ss_dssp CCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHHHTC--------CTTCCEEEEECCCSSTTHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeecCCccCcccchHHHHhcC--------CCCCcEEEEEcCCCCcchHHHH
Confidence 578999999999999999999999999987777777 5556543321 3568999999998653 3 23
Q ss_pred CccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccCcceeEeecCCCccc---c
Q 017087 115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI---D 191 (377)
Q Consensus 115 ~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~---~ 191 (377)
...++|+++|||||++||+|+|||+|+|+++|++||+.+++++.+|+|.|| ....+... .+++++|+.....++ .
T Consensus 171 ~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~~~~V~n~dd-~~~~~~~~-~~~~~~~g~~~~~d~~~i~ 248 (454)
T 2am1_A 171 SELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADP-IVEDYLPI-DKKVVRFGQGAELEITDLV 248 (454)
T ss_dssp HHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTCEEEEESCG-GGGGGCCS-SSEEEEESTTSSBCEEEEE
T ss_pred hCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccCCEEEEEcHH-HHHHHHhc-CCcEEEEeCCCCCceeeeE
Confidence 334799999999999999999999999999999999988888999999998 76655544 456788885322111 0
Q ss_pred cccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEE
Q 017087 192 TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTW 271 (377)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~i 271 (377)
.......|.+...+. .+.+|++|+||++|+++|+ +++..+|++++.|+++|++|+++|||||++. ..+++.+
T Consensus 249 ~~~~~~~~~~~~~~~-----~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~i 320 (454)
T 2am1_A 249 ERKDSLTFKANFLEQ-----ALDLPVTGKYNATNAMIAS--YVALQEGVSEEQIRLAFQHLELTRNRTEWKK-AANGADI 320 (454)
T ss_dssp ECSSCEEEEETTCSS-----EEEESSCCHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCCCCCCSCEEC-CTTTCEE
T ss_pred EeCCceEEEEEecCc-----EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCccCCeeEEE-CCCCeEE
Confidence 000111232221111 2468999999999999999 8899999999999999999999999999996 3467889
Q ss_pred EEcCCCCCHHHHHHHHhccc---C---CcEEEEecCCCCCCCC--------------------------hHHHHHHHHhC
Q 017087 272 VDDSKATNLEATCTGLMDLK---G---HKCVILLGGQAKFGYS--------------------------GVLIWKTLVNN 319 (377)
Q Consensus 272 idD~~a~np~s~~~al~~~~---~---~r~i~v~G~~~~~g~~--------------------------~~~i~~~l~~~ 319 (377)
|||+|||||+|++++++.++ + +|+++|+|++.+.|.. ++.+.+.+...
T Consensus 321 iDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e~G~~~~~~~~~~~~~~~~~~~d~vi~~g~~~~~i~~~~~~~ 400 (454)
T 2am1_A 321 LSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQM 400 (454)
T ss_dssp EEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTTTCSEEEEEESTTHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEECCchhcCcHHHHHHHHHHHHHHhcCCCEEEEECcCHHHHHHHHhhc
Confidence 99988999999999988874 2 6899999988654433 34444433221
Q ss_pred ---CCCCccc---ccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087 320 ---GLSIPCF---AVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376 (377)
Q Consensus 320 ---g~~~~~~---~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~ 376 (377)
+....+. .++|+++|++.+.+.+++||+||++ | +|++.|+++|+.
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~---G---------S~~~~~e~~~~~ 451 (454)
T 2am1_A 401 FPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLK---G---------SNSMNLAKLVES 451 (454)
T ss_dssp SCTTCEEEEEBSSSCBTHHHHHHHHHHHCCTTEEEEEE---S---------SCCHHHHHHHHH
T ss_pred cccCcceeeecccCCCCHHHHHHHHHHhCCCCCEEEEE---e---------CCcCCHHHHHHH
Confidence 1000011 4579999999999999999999997 6 677888888763
No 8
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=3.7e-55 Score=431.64 Aligned_cols=307 Identities=19% Similarity=0.292 Sum_probs=224.6
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc----ccchhhhhhhhcccCCCCCCCccEEEEEeCcccc-c--cC
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQM-E--IP 114 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l-~--~~ 114 (377)
+.++|+||||||||||++||+++|+++|....+.|+ +|.|.+... ...++|++|+|+|+++. + ..
T Consensus 99 ~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~t~g~~n~~ig~p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~ 170 (452)
T 1gg4_A 99 PARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLR--------LTPEYDYAVIELGANHQGEIAWT 170 (452)
T ss_dssp CCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHHTT--------CCTTCSEEEEECCCSSSSHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeeccccccCCcchhHHHHc--------CCCCCcEEEEEeCCCCcchHHHH
Confidence 578999999999999999999999999976656666 455544322 24568999999997653 3 23
Q ss_pred CccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHH--hccCcceeEeecCC---Ccc
Q 017087 115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAI--KGHRFNLAWIGAFP---GVK 189 (377)
Q Consensus 115 ~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~--~~~~~~~~~~~~~~---~~~ 189 (377)
...++|+++|||||++||+|+|||+|+|+++|++||+.+++++.+|+|.|||....+. .. ..++++|+... ++.
T Consensus 171 ~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~-~~~~~~~g~~~~~~d~~ 249 (452)
T 1gg4_A 171 VSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG-SRKVWRFSPNAANSDFT 249 (452)
T ss_dssp HHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHT-TSEEEEECSSCTTCSBE
T ss_pred hCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccCCEEEEeCCcHHHHHHHHhhc-CCCEEEEeCCCCCCcEE
Confidence 3347999999999999999999999999999999999888889999999999887763 22 45678888532 222
Q ss_pred ccc---ccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeecc
Q 017087 190 IDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266 (377)
Q Consensus 190 ~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~ 266 (377)
... ......|.+...+... .+.+|++|+||++|+++|+ +++..+|++++.|+++|++|+++|||||++.. .
T Consensus 250 ~~~~~~~~~g~~~~~~~~~~~~---~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~~-~ 323 (452)
T 1gg4_A 250 ATNIHVTSHGTEFTLQTPTGSV---DVLLPLPGRHNIANALAAA--ALSMSVGATLDAIKAGLANLKAVPGRLFPIQL-A 323 (452)
T ss_dssp EEEEEECSSSEEEEEEETTEEE---EEEECSSSTHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCCCCTTSSEEEEE-E
T ss_pred EEEEEEcCCceEEEEEECCCEE---EEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCCceEEEC-C
Confidence 110 1111223332222222 2478999999999999999 88999999999999999999999999999963 5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhccc--CCcEEEEecCCCCCCCChHH----HHHHHHhCCCC--------C--------c
Q 017087 267 QGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKFGYSGVL----IWKTLVNNGLS--------I--------P 324 (377)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~--~~r~i~v~G~~~~~g~~~~~----i~~~l~~~g~~--------~--------~ 324 (377)
+++.+|||+|||||+|++++++.++ ++|+++|+|++.+.|...+. +.+.+.....+ . .
T Consensus 324 ~~~~vidDsyahnp~s~~~~l~~l~~~~~~~i~V~G~~~e~g~~~~~~~~~~~~~~~~~~~d~vi~~g~~~~~i~~~~~~ 403 (452)
T 1gg4_A 324 ENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGV 403 (452)
T ss_dssp TTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCTTHHHHHHHHHHHHHHHHTCSEEEEESSSTHHHHHHTTS
T ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHhccCCEEEEECCccccCChhHHHHHHHHHHHHHcCCCEEEEECcCHHHHHHHhhc
Confidence 6799999988999999999988774 26889999999887776543 33333211110 0 0
Q ss_pred ccccCCHHHHHHHHHHhcCC--CCEEEEcCCCcccccccChHHHHHHHHHHHh
Q 017087 325 CFAVANMKDAVNHARRMATN--GDAIVLSPGCASFDEFRNFEHRGMVFQELAF 375 (377)
Q Consensus 325 ~~~~~~~~~ai~~a~~~~~~--gdivli~~g~~s~~~~~~~~~rg~~f~~~v~ 375 (377)
..+++|+++|++.+.+.+++ ||+||++ | +|++.++++|+
T Consensus 404 ~~~~~~~~~ai~~a~~~~~~~~gd~VLv~---G---------S~~~~~e~i~~ 444 (452)
T 1gg4_A 404 GEHFADKTALITRLKLLIAEQQVITILVK---G---------SRSAAMEEVVR 444 (452)
T ss_dssp CEEESSHHHHHHHHHHHHHHCSSEEEEEE---C---------CGGGTTHHHHH
T ss_pred CceeCCHHHHHHHHHHhhcccCCcEEEEE---c---------CCcCCHHHHHH
Confidence 12468999999999999999 9999997 6 45555555554
No 9
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=7e-54 Score=424.00 Aligned_cols=327 Identities=18% Similarity=0.200 Sum_probs=249.3
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCC--CCcEEEEeCCCChHhHHHHHHHHHHhCCCCee--eeccc
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNL 78 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~--~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~--~~g~~ 78 (377)
++||+||+++++||++.+|+++|+|+++++++++++. + +.++|+||||||||||++||+++|+++|++++ ++|++
T Consensus 73 d~vV~spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~ 151 (469)
T 1j6u_A 73 DLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTL-KREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIM 151 (469)
T ss_dssp SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCC
T ss_pred CEEEECCCcCCCCHHHHHHHHcCCcEEEHHHHHHHHH-hccCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCee
Confidence 6899999999999999999999999999999999887 4 47899999999999999999999999999853 45564
Q ss_pred cchh-hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCC-HHHHHHHHHHhcccCCCC
Q 017087 79 GNPL-SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVNT 156 (377)
Q Consensus 79 g~~~-~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt-~e~~~~~K~~i~~~~~~~ 156 (377)
..+. ....+ .+.| +|+|+|+++.. ...++|+++|||||++||+|+||| +|+|+++|.++++.++
T Consensus 152 ~~~g~~~~~~---------~~~~-~V~E~~~~~~~--~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~-- 217 (469)
T 1j6u_A 152 DSLEHGNYEK---------GNGP-VVYELDESEEF--FSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD-- 217 (469)
T ss_dssp TTSTTSSEEC---------CSSC-EEEEECTTSGG--GGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS--
T ss_pred cccCcccccc---------CCCC-EEEECCCccCc--cccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC--
Confidence 4321 11111 1346 99999998642 235799999999999999999997 9999999999988653
Q ss_pred ceEEEeCCChhhHHHHhccCcceeEeecCC-Cccc--cccccc-ceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHH
Q 017087 157 KLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKI--DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232 (377)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~ 232 (377)
.+|+|.|||.+..+ ++++|+... ++.. ...... ..|.+...+.. +....++++|.||++|+++|+
T Consensus 218 -~~V~n~dd~~~~~~------~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~hn~~NalaAi-- 286 (469)
T 1j6u_A 218 -LVVTFAEDELTSHL------GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKR--YLELKLKVPGFHNVLNALAVI-- 286 (469)
T ss_dssp -EEEEETTCTTTGGG------CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEE--EEEEEESSCSHHHHHHHHHHH--
T ss_pred -EEEEECCChhhccc------eEEEEECCCceEEEEEEECCCCCEEEEEEECCeE--EEEEEecCcCHHHHHHHHHHH--
Confidence 89999999976432 466777432 1211 001111 22333222221 123478999999999999999
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCeeeEE--eeccCCeEEEEcCCCCCHHHHHHHHhccc----CCcEEEEecC--CCC
Q 017087 233 VLGLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QAK 304 (377)
Q Consensus 233 a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~--~~~~~~~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G~--~~~ 304 (377)
+++..+|++++.|+++|++|+++|||||++ . ..+++.+|||| +|||.++.++++.++ ++|+++|+|+ ..+
T Consensus 287 a~a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~-~~~g~~vi~D~-aHnp~~~~a~l~al~~~~~~~~i~~I~g~g~~~r 364 (469)
T 1j6u_A 287 ALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHD-PETNIYVIDDY-AHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSR 364 (469)
T ss_dssp HHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE-TTTTEEEEEEC-CCSHHHHHHHHHHHHHHCSSSEEEEEECCBC---
T ss_pred HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEccc-ccCCcEEEEeC-CCCHHHHHHHHHHHHHhcCCCcEEEEEcCCCCCc
Confidence 889999999999999999999999999999 5 35789999996 999999998876653 3678899873 221
Q ss_pred --------------------C-----------CCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCC
Q 017087 305 --------------------F-----------GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353 (377)
Q Consensus 305 --------------------~-----------g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g 353 (377)
. |.+++.+.+.+...+. .+..++|+++|++.+ .+++||+||+ +|
T Consensus 365 ~~~~~~~l~~~~~~~d~vil~~~~~~~e~p~~g~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~--~a~~gD~VLv-~g 439 (469)
T 1j6u_A 365 LEREDGNFAKALQLADEVVVTEVYDAFEEKKNGISGKMIWDSLKSLGK--EAYFVEKLPELEKVI--SVSENTVFLF-VG 439 (469)
T ss_dssp -----CHHHHHHTTSSEEEECCCBC---------CHHHHHHHHHHTTC--CEEECCSGGGHHHHC--CCCSSEEEEE-EC
T ss_pred cHHHHHHHHHHHhcCCEEEEcccCCCCCCcccCcCHHHHHHHHHhcCC--cEEEECCHHHHHHHh--hCCCCCEEEE-EC
Confidence 1 5556777777765432 345668899998876 8899999998 47
Q ss_pred CcccccccC
Q 017087 354 CASFDEFRN 362 (377)
Q Consensus 354 ~~s~~~~~~ 362 (377)
++|++.+.+
T Consensus 440 ~Gs~~~~~~ 448 (469)
T 1j6u_A 440 AGDIIYSSR 448 (469)
T ss_dssp SSTHHHHHH
T ss_pred CCchhHHHH
Confidence 899987644
No 10
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=2.6e-52 Score=416.12 Aligned_cols=312 Identities=21% Similarity=0.178 Sum_probs=236.8
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhhc-ccCCC-----------CCCCccEEEEEeCcc
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALPS-----------SKPKFQVAVVEVSSY 109 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~~-----------~~~~~~~~ViE~~~~ 109 (377)
+.++|+||||||||||++||+++|+++|+++++.|+++.++....+.. .+++. ...++|++|+|+|++
T Consensus 107 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~ 186 (498)
T 1e8c_A 107 NLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH 186 (498)
T ss_dssp SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred cCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCc
Confidence 578999999999999999999999999999999898877655332211 12221 135679999999987
Q ss_pred ccccCCc-cccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccCc---ceeEeecC
Q 017087 110 QMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF---NLAWIGAF 185 (377)
Q Consensus 110 ~l~~~~~-~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~---~~~~~~~~ 185 (377)
+++..+. .++|+++|||||++||+|+|||+|+|+++|++||+. ++++.+|+|.|||....+...... ++++|+..
T Consensus 187 ~l~~~rl~~~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~ 265 (498)
T 1e8c_A 187 GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHIN 265 (498)
T ss_dssp HHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCC
T ss_pred hhhcccccccCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEecC
Confidence 7642221 268999999999999999999999999999999987 567899999999998887765433 56667643
Q ss_pred C-----Cccccc---ccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 017087 186 P-----GVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257 (377)
Q Consensus 186 ~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~g 257 (377)
. ++.... ......|.+...+... .+.+|++|+||++|+++|+ +++..+|++++.|+++|++|+++||
T Consensus 266 ~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~~~~lGi~~~~i~~~L~~~~~~~g 340 (498)
T 1e8c_A 266 PNCHGRWLKATEVNYHDSGATIRFSSSWGDG---EIESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQPVCG 340 (498)
T ss_dssp TTTCSEEEEEEEEEECSSCEEEEEEETTCCE---EEEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCCCTT
T ss_pred CCCCcCCEEEEEEEEcCCceEEEEEECCceE---EEEecCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCC
Confidence 2 111110 0111122222111111 2468999999999999999 8899999999999999999999999
Q ss_pred eeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc---CCcEEEEecCCCC---------------------------CCC
Q 017087 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAK---------------------------FGY 307 (377)
Q Consensus 258 R~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~r~i~v~G~~~~---------------------------~g~ 307 (377)
|||++. ..+++.+|+| |||||+|++++++.++ ++|+++|||...+ +++
T Consensus 341 R~e~v~-~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~r~i~V~G~g~dr~~~~~~~~~~~~~~~~d~vi~~~~~~r~e 418 (498)
T 1e8c_A 341 RMEVFT-APGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTE 418 (498)
T ss_dssp SSEEEC-CTTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCSTHHHHHHHHHHHHCSEEEECCSCCBTS
T ss_pred ceEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCCEEEEECCCCCcchhHHHHHHHHHHhCCCEEEEcCCCCCCC
Confidence 999995 2457789999 5999999999988774 4689999985321 345
Q ss_pred ChHHHHHHHHhCCCCC--cccccCCHHHHHHHHHHhcCCCCEEEEc-CCCcccccccC
Q 017087 308 SGVLIWKTLVNNGLSI--PCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 362 (377)
Q Consensus 308 ~~~~i~~~l~~~g~~~--~~~~~~~~~~ai~~a~~~~~~gdivli~-~g~~s~~~~~~ 362 (377)
+++.+.+.+.. ++.. .+..++|+++|++.+.+.+++||+||++ +|+.+++.+.+
T Consensus 419 ~~~~i~~~~~~-~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~GkG~~~~q~~~~ 475 (498)
T 1e8c_A 419 EPRAIINDILA-GMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGN 475 (498)
T ss_dssp CHHHHHHHHHT-TSSCGGGSEECSCHHHHHHHHHHHSCTTCEEEEESCTTCCEEEETT
T ss_pred CHHHHHHHHHh-hccccCceEEECCHHHHHHHHHHhCCCCCEEEEecCCCcceEEECC
Confidence 56777766653 3321 2456789999999999999999999997 78888887765
No 11
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=2.1e-51 Score=412.30 Aligned_cols=311 Identities=22% Similarity=0.264 Sum_probs=235.0
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchhhhhhhh-cccCCC-----------CCCCccEEEEEeCcc
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFH-CIALPS-----------SKPKFQVAVVEVSSY 109 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~-~~~~~~-----------~~~~~~~~ViE~~~~ 109 (377)
+.++|+||||||||||++||+++|+++|+++++.|+.+..+....+. ..+++. ...++|++|+|+|++
T Consensus 145 ~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~ 224 (535)
T 2wtz_A 145 RLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSH 224 (535)
T ss_dssp SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred cceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 56899999999999999999999999999999989877665432221 111211 135689999999987
Q ss_pred ccccCCc-cccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCC--CCceEEEeCCChhhHHHHhccCcceeEeecCC
Q 017087 110 QMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP 186 (377)
Q Consensus 110 ~l~~~~~-~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~--~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~ 186 (377)
+++..+. .++|+++|||||++||+|+|||+|+|+++|++||+.++ +++.+|+|.|||....+..... ++++|+...
T Consensus 225 ~l~~~rl~~~~p~vaViTNI~~DHld~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~-~v~~~g~~~ 303 (535)
T 2wtz_A 225 ALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA-DAITVSAAD 303 (535)
T ss_dssp HHHTTTTTTCCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHS-SCEEEESSS
T ss_pred cccccccccCCcCEEEEcCCChHHhhhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcC-CEEEEecCC
Confidence 6543221 26899999999999999999999999999999999764 6789999999998877765433 678888542
Q ss_pred ---Ccccc---cc-cccceEEeccCCee-EEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCe
Q 017087 187 ---GVKID---TE-AKTASFEVPAVGVV-SQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258 (377)
Q Consensus 187 ---~~~~~---~~-~~~~~~~~~~~~~~-~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR 258 (377)
++... .. .....|.+...+.. .. +.++++|+||++|+++|+ +++..+|++++.|+++|++|+ +|||
T Consensus 304 ~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~-~~gR 377 (535)
T 2wtz_A 304 RPAHWRATDVAPTDAGGQQFTAIDPAGVGHH---IGIRLPGRYNVANCLVAL--AILDTVGVSPEQAVPGLREIR-VPGR 377 (535)
T ss_dssp SCCSEEEEEEEEETTTEEEEEEECTTSCEEE---EEESCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC-CTTS
T ss_pred CcCcEEEEEEEEcCCCCeEEEEEeCCceEEE---EEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCC-CCCc
Confidence 22111 01 11223333322111 22 478999999999999999 889999999999999999999 9999
Q ss_pred eeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc--CCcEEEEecCCCC---------------------------CCCCh
Q 017087 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAK---------------------------FGYSG 309 (377)
Q Consensus 259 ~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~r~i~v~G~~~~---------------------------~g~~~ 309 (377)
||++. ..+++.+|+| |||||+|++++++.++ ++|+++|||.+.+ +++++
T Consensus 378 ~e~v~-~~~~~~viiD-yahNP~s~~aal~~l~~~~~r~i~V~G~~gdr~~~~~~~~~~~a~~~~d~vi~~~~~~r~e~~ 455 (535)
T 2wtz_A 378 LEQID-RGQGFLALVD-YAHKPEALRSVLTTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDP 455 (535)
T ss_dssp SEECC-SSCSSEEEEE-CCCSHHHHHHHHHTTCCSSSCEEEEECCCTTSCGGGHHHHHHHHHHHCSEEEECCSCCTTSCH
T ss_pred eEEEE-cCCCcEEEEE-CCCCHHHHHHHHHHhhCCCCcEEEEECCCCccchhhHHHHHHHHHhcCCEEEEcCCCCCCCCH
Confidence 99995 3457778888 5999999999998875 4688999996532 34555
Q ss_pred HHHHHHHHhCCCC-----CcccccCCHHHHHHHHHHhcCCCCEEEEc-CCCcccccccC
Q 017087 310 VLIWKTLVNNGLS-----IPCFAVANMKDAVNHARRMATNGDAIVLS-PGCASFDEFRN 362 (377)
Q Consensus 310 ~~i~~~l~~~g~~-----~~~~~~~~~~~ai~~a~~~~~~gdivli~-~g~~s~~~~~~ 362 (377)
+.+.+.+.+ +.. ..+..++|+++|++.+.+.+++||+||++ +|+..++.+.+
T Consensus 456 ~~i~~~i~~-g~~~~~~~~~~~~~~d~~~Ai~~a~~~a~~gD~VLv~GsGhe~~q~~~~ 513 (535)
T 2wtz_A 456 TAIRREILA-GAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQRGGG 513 (535)
T ss_dssp HHHHHHHHH-HHTTCC-CCEEEECCSHHHHHHHHHHHCCTTCEEEEESCTTCCCEECC-
T ss_pred HHHHHHHHh-hhhhcCCCCcEEEECCHHHHHHHHHHhCCCCCEEEEEeCCCcceEEECC
Confidence 666665432 111 12456789999999999999999999997 67777766654
No 12
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=1.7e-48 Score=386.48 Aligned_cols=322 Identities=17% Similarity=0.155 Sum_probs=231.8
Q ss_pred ceeeHHHHHHhhC---CCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecccc------------chhhhhhh----
Q 017087 27 RVMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG------------NPLSEAAF---- 87 (377)
Q Consensus 27 ~~l~~~~~~~~~~---~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g------------~~~~~~~~---- 87 (377)
|.+.|++.+.+.+ +++.++|+||||||||||++||+++|+++|++++++++.. .+++...+
T Consensus 45 ~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~ 124 (487)
T 2vos_A 45 PSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATY 124 (487)
T ss_dssp TTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHH
Confidence 4577888887765 2467899999999999999999999999999997655421 11111100
Q ss_pred ---------------------h-cccCC----------CCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcC
Q 017087 88 ---------------------H-CIALP----------SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER 135 (377)
Q Consensus 88 ---------------------~-~~~~~----------~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~ 135 (377)
. ..+.. +.+.++|++|+|+|+++.......++|+++|||||+.||+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~d~tn~i~p~vaVITnI~~DHld~ 204 (487)
T 2vos_A 125 REIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATNVINAPVAVITPISIDHVDY 204 (487)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCSSCCSEEEECCCCCCBCSC
T ss_pred HHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCCEEEECCcchhhhhh
Confidence 0 00000 014568999999999864434456899999999999999999
Q ss_pred CC-CHHHHHHHHHHhcccC---CCCceEEEeCCChhhHHHHh----ccCcceeEeecCCCccccc---ccccceEEeccC
Q 017087 136 HK-TMKNYALTKCHLFSHM---VNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDT---EAKTASFEVPAV 204 (377)
Q Consensus 136 ~g-t~e~~~~~K~~i~~~~---~~~~~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 204 (377)
|| |+|+|+.+|++|++.+ ++++.+|+|.|||....++. ....++.+|+. ++.+.. ......|.+...
T Consensus 205 lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~--d~~~~~~~~~~~g~~~~~~~~ 282 (487)
T 2vos_A 205 LGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDS--EFAVLRRQIAVGGQVLQLQGL 282 (487)
T ss_dssp SSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTT--TBEEEEEEEETTEEEEEEEET
T ss_pred hCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecC--ceEEEeeccccCCceEEEecC
Confidence 99 8999999999999764 67889999999997655432 22345666653 222111 011122333222
Q ss_pred CeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHc-------CCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCC
Q 017087 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-------GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277 (377)
Q Consensus 205 ~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~l-------gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a 277 (377)
+.. +..+.++++|.||++|+++|+ +++..+ |++.+.|+++|++|+ +|||||++. . +..+|+|+ +
T Consensus 283 ~~~--~~~~~l~l~G~hn~~Na~aAi--aa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~--~-~~~vi~D~-A 353 (487)
T 2vos_A 283 GGV--YSDIYLPLHGEHQAHNAVLAL--ASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMR--S-APTVFIDA-A 353 (487)
T ss_dssp TEE--EEEEEECCCSHHHHHHHHHHH--HHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEE--T-TTEEEECC-C
T ss_pred Ccc--cceeecCCCCHHHHHHHHHHH--HHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEc--C-CCeEEEEC-C
Confidence 211 112468999999999999999 777777 799999999999999 999999995 3 35677785 8
Q ss_pred CCHHHHHHHHhccc----CCcEEEEecCCCC-------------------------CCCChHHHHHHHHh-CCCCCcccc
Q 017087 278 TNLEATCTGLMDLK----GHKCVILLGGQAK-------------------------FGYSGVLIWKTLVN-NGLSIPCFA 327 (377)
Q Consensus 278 ~np~s~~~al~~~~----~~r~i~v~G~~~~-------------------------~g~~~~~i~~~l~~-~g~~~~~~~ 327 (377)
|||++++++++.++ .+|+++|+|++.+ ++++++++.+.++. .+. ..+..
T Consensus 354 HNp~a~~a~l~~l~~~~~~~~~i~V~G~~~dkd~~~~~~~l~~~~d~vilt~~~~~r~~~~~~l~~~~~~~~~~-~~~~~ 432 (487)
T 2vos_A 354 HNPAGASALAQTLAHEFDFRFLVGVLSVLGDKDVDGILAALEPVFDSVVVTHNGSPRALDVEALALAAGERFGP-DRVRT 432 (487)
T ss_dssp CSHHHHHHHHHHHHHSCCCSEEEEEECCBTTBCHHHHHHHHTTTCSEEEECCCSCTTBCCHHHHHHHHHHHHCG-GGEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCCHHHHHHHHHhhCCEEEEeCCCCcCCCCHHHHHHHHHhhcCC-CceEe
Confidence 99999999887763 3688999998732 22346667765543 121 13456
Q ss_pred cCCHHHHHHHHHHhcCCC-------------CEEEEcCCCcccccccCh
Q 017087 328 VANMKDAVNHARRMATNG-------------DAIVLSPGCASFDEFRNF 363 (377)
Q Consensus 328 ~~~~~~ai~~a~~~~~~g-------------divli~~g~~s~~~~~~~ 363 (377)
++++++|++.+.+.+++| |+|||+ ||++.+.+.
T Consensus 433 ~~~~~~Ai~~a~~~a~~~~~~~~~~~~~~~~d~vlv~---GS~y~vg~~ 478 (487)
T 2vos_A 433 AENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVIT---GSVVTAGAA 478 (487)
T ss_dssp CSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEE---SSHHHHHHH
T ss_pred cCCHHHHHHHHHHhcccCcccccccccccCCCEEEEE---eeHHHHHHH
Confidence 789999999998887766 899997 999987654
No 13
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=1e-47 Score=376.73 Aligned_cols=311 Identities=19% Similarity=0.177 Sum_probs=219.5
Q ss_pred eeHHHHHHhhC---CCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccc------------cchhhhhhhhc----
Q 017087 29 MSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC---- 89 (377)
Q Consensus 29 l~~~~~~~~~~---~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~~---- 89 (377)
|.|+..+.+.+ +++.++|+||||||||||++||+++|+++|++++++++. |.++++..+..
T Consensus 35 L~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~ 114 (437)
T 3nrs_A 35 LERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQ 114 (437)
T ss_dssp CHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHHH
Confidence 56776666554 246789999999999999999999999999999876662 22222211100
Q ss_pred ---c--cCC--------------CCCCCccEEEEEeCccc-cccCCccccccEEEEecCCcchhcCCC-CHHHHHHHHHH
Q 017087 90 ---I--ALP--------------SSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCH 148 (377)
Q Consensus 90 ---~--~~~--------------~~~~~~~~~ViE~~~~~-l~~~~~~~~p~i~ViTni~~dHl~~~g-t~e~~~~~K~~ 148 (377)
. ..+ +.+.++|++|+|+|+++ ++. .+.++|+++|||||+.||+|+|| |+|+|+++|++
T Consensus 115 v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld~-tnii~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~ 193 (437)
T 3nrs_A 115 IEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDA-TNIVDSDVAAITSIALDHTDWLGYDRESIGREKAG 193 (437)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSG-GGGSCCSEEEECCCCCCBCCCTTCSHHHHHHHHGG
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCcccc-ccccCCCEEEEcCccHHHHHHhCCcHHHHHHHHHh
Confidence 0 000 11457899999999765 454 44579999999999999999999 89999999999
Q ss_pred hcccCCCCceEEEeCCChh--hHHHHhccCcceeEeecCCCcccc--------cccccceEEeccCCeeEEEEeeccCCC
Q 017087 149 LFSHMVNTKLGLLPFGNQH--LNEAIKGHRFNLAWIGAFPGVKID--------TEAKTASFEVPAVGVVSQLQLHNMKVM 218 (377)
Q Consensus 149 i~~~~~~~~~~v~n~dd~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~l~ 218 (377)
|++ +++.+|+|.||+. +...++...+++++++.+.++... .......+.+...+. . ...++++
T Consensus 194 I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~l~ 266 (437)
T 3nrs_A 194 VFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER--Q--LTGLPVP 266 (437)
T ss_dssp GCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE--E--EEEECCC
T ss_pred hcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEecccceeeecccccccccccccCceEEEecCCc--c--eeccCCc
Confidence 997 4788999988764 334444445667777653211111 000112233322211 1 1245555
Q ss_pred --ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc-----
Q 017087 219 --GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----- 291 (377)
Q Consensus 219 --G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----- 291 (377)
|.||+.|+++|+ ++ ..+|++.+.|+++|++|+ +|||||++. .+ ..+|+|| ||||+|++++++.++
T Consensus 267 ~~~~~Na~~Alaa~--~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~--~~-~~vi~D~-AHNp~a~~all~~l~~~~~~ 338 (437)
T 3nrs_A 267 NVPLANAATALAVL--HY-SELPLSDEAIRQGLQAAS-LPGRFQVVS--EQ-PLLILDV-AHNPHAARYLVNRLAQVINP 338 (437)
T ss_dssp SSCHHHHHHHHHHH--HH-HTCCCCHHHHHHHHHHCC-CTTSSEEEE--TT-TEEEECC-CCSHHHHHHHHHHHHHTC--
T ss_pred chhHHHHHHHHHHH--HH-hCCCCCHHHHHHHHHhCC-CCCceEEEe--cC-CeEEEEC-CCCHHHHHHHHHHHHhhcch
Confidence 899999998887 44 568999999999999999 999999995 33 4678886 999999999877664
Q ss_pred -----CCcEEEEecCCCC-------------------------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHh
Q 017087 292 -----GHKCVILLGGQAK-------------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRM 341 (377)
Q Consensus 292 -----~~r~i~v~G~~~~-------------------------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~ 341 (377)
++|+++|+|.+.+ ++++++++.+.+.. . ..++|+++|++.+.+.
T Consensus 339 ~~~~~~~r~i~V~G~~~dkd~~~~~~~l~~~~~~v~~~~~~~~r~~~~~~l~~~~~~-----~-~~~~d~~~Ai~~a~~~ 412 (437)
T 3nrs_A 339 VNASKQGKVRAVVGMLSDKDIAGTLACLSERVDEWYCAPLEGPRGASAGQLAEHLVS-----A-RQFSDVETAWRQAMQD 412 (437)
T ss_dssp ------CCEEEEECCBTTBCHHHHHHHHTTTCCEEEECCCSSTTBCCHHHHHTTCSS-----C-EECSSHHHHHHHHHHH
T ss_pred hhhcCCCCEEEEEeCCCCCCHHHHHHHHHhcCCEEEEeCCCCCCCCCHHHHHHHHhh-----C-CCcCCHHHHHHHHHHh
Confidence 3689999996542 12233444433321 1 4578999999999999
Q ss_pred cCCCCEEEEcCCCcccccccChH
Q 017087 342 ATNGDAIVLSPGCASFDEFRNFE 364 (377)
Q Consensus 342 ~~~gdivli~~g~~s~~~~~~~~ 364 (377)
+++||+||++ ||++.+.+..
T Consensus 413 a~~~D~VLv~---GS~~~v~~~~ 432 (437)
T 3nrs_A 413 ADTQDVVIVC---GSFHTVAHVM 432 (437)
T ss_dssp CCTTCEEEEE---SSHHHHHHHH
T ss_pred cCCCCeEEEE---ehHHHHHHHH
Confidence 9999999997 9998876654
No 14
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=1.1e-47 Score=362.94 Aligned_cols=248 Identities=18% Similarity=0.202 Sum_probs=193.5
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCee--ee---c
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VG---G 76 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~--~~---g 76 (377)
.++||+||+++++||++++|+++|+|++++++++++.+.++.++|+||||||||||++||+++|+++|.+++ ++ |
T Consensus 67 ~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~ 146 (326)
T 3eag_A 67 ADVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPE 146 (326)
T ss_dssp CSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEET
T ss_pred CCEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceec
Confidence 478999999999999999999999999999999998532567899999999999999999999999998864 22 5
Q ss_pred cccchhhhhhhhcccCCCCCCCccEEEEEeCccccccC-----CccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcc
Q 017087 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP-----NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151 (377)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~-----~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~ 151 (377)
++|.+....... +.....+.+++|+|+|+++.... ...++|+++|||||++||+|+|||+|+|+++|++||+
T Consensus 147 n~~~~~~~~~p~---~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~ 223 (326)
T 3eag_A 147 NFGVSARLPQTP---RQDPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVR 223 (326)
T ss_dssp TSSCSEECCCCC---SSCTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHT
T ss_pred cCCcceecCCcc---ccccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHH
Confidence 666542211000 00123467899999999765421 1247999999999999999999999999999999999
Q ss_pred cCCCCceEEEeCCChhhHHHHhc-cCcceeEeecCCCccccc-ccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHH
Q 017087 152 HMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA 229 (377)
Q Consensus 152 ~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA 229 (377)
.+++++.+|+|.|||....+... ...++++|+...++.... ...+. |.+...+.. +..+.++++|+||++|+++|
T Consensus 224 ~~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~g~-f~~~~~~~~--~~~~~l~l~G~hNv~NalaA 300 (326)
T 3eag_A 224 TVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGS-FDVLLDGKT--AGRVKWDLMGRHNRMNALAV 300 (326)
T ss_dssp TSCTTSEEEEESSCHHHHHHHTTCCCSCEEEESSSSSEEEEEECTTSC-EEEEETTEE--EEEECCCCCSHHHHHHHHHH
T ss_pred hCCCCCEEEEeCCCHHHHHHHhhccCCCEEEECCCCcEEEEEecCCcE-EEEEECCce--EEEEEecCCcHHHHHHHHHH
Confidence 98889999999999999887654 345677888543332210 11122 443333321 22358999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 017087 230 ALSVLGLDIGVDVEALNSTIEILRTPPH 257 (377)
Q Consensus 230 ~~~a~~~~lgi~~~~i~~~l~~~~~~~g 257 (377)
+ +++..+|++.+.|+++|++|+|++|
T Consensus 301 i--a~a~~lGi~~~~i~~~L~~f~gv~R 326 (326)
T 3eag_A 301 I--AAARHVGVDIQTACEALGAFKNVKR 326 (326)
T ss_dssp H--HHHHHHTCCHHHHHHHHHTCCCEEC
T ss_pred H--HHHHHcCCCHHHHHHHHHhCCCCCC
Confidence 9 8999999999999999999998764
No 15
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=9.1e-48 Score=377.54 Aligned_cols=298 Identities=15% Similarity=0.133 Sum_probs=212.8
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc------------ccchhhhhhhh-----------c--------
Q 017087 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH-----------C-------- 89 (377)
Q Consensus 41 ~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~-----------~-------- 89 (377)
++.++|+||||||||||++||+++|+++|+++++.++ .|.+++...+. .
T Consensus 50 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (442)
T 1o5z_A 50 LEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFS 129 (442)
T ss_dssp GSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTC
T ss_pred hcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCC
Confidence 4678999999999999999999999999999987664 25444332110 0
Q ss_pred ccCC----------CCCCCccEEEEEeCccc-cccCCccccccEEEEecCCcchhcCCC-CHHHHHHHHHHhcccCCCCc
Q 017087 90 IALP----------SSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK 157 (377)
Q Consensus 90 ~~~~----------~~~~~~~~~ViE~~~~~-l~~~~~~~~p~i~ViTni~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~ 157 (377)
.+.+ +.+.++|++|+|+|+++ ++.. ..++|+++|||||++||+|+|| |+|+|+++|+++++ +++
T Consensus 130 ~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t-~~~~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~---~~~ 205 (442)
T 1o5z_A 130 PSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDAT-NVVFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIK---ERV 205 (442)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGG-GGCCCSCEEECCCCC-------CCHHHHHHHHGGGCC---TTC
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccc-ccCCCCEEEECCccHhhhhhhCcCHHHHHHHHHhhcc---CCc
Confidence 0000 01346899999999655 4443 4589999999999999999999 99999999999997 578
Q ss_pred eEEEeCCChhhHHHHhc----cCcceeEeecCCCccccc---ccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHH
Q 017087 158 LGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAA 230 (377)
Q Consensus 158 ~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~ 230 (377)
.+|+|.||+....+... ...++.+|+. ++.... ......+.+...+ . +..+.+|++|.||++|+++|+
T Consensus 206 ~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~l~G~hn~~NalaAi 280 (442)
T 1o5z_A 206 PLVTGERKREALKVMEDVARKKSSRMYVIDK--DFSVKVKSLKLHENRFDYCGEN-T--FEDLVLTMNGPHQIENAGVAL 280 (442)
T ss_dssp CEEECCCCHHHHHHHHHHHHHHTCCEEEBTT--TBEEEEEECCTTCEEEEEESSS-E--EEEEEESSCSTHHHHHHHHHH
T ss_pred cEEEcCCChHHHHHHHHHHHHcCCcEEEeCc--ceeeeccccccCCceEEEeccc-c--ccccccCCCcHhHHHHHHHHH
Confidence 89999999987665432 2346677764 222110 0011233332221 1 113478999999999999999
Q ss_pred HHHHHH--HcCCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc----CCcEEEEecCCCC
Q 017087 231 LSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAK 304 (377)
Q Consensus 231 ~~a~~~--~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G~~~~ 304 (377)
+++. .+|++.+.|+++|++|+ +|||||++. .++..+|+|+ +|||+|++++++.+. ++|+++|+|.+.+
T Consensus 281 --a~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~--~~~~~viiD~-AhNp~s~~~~l~~l~~~~~~~~~i~V~g~~~d 354 (442)
T 1o5z_A 281 --KTLEATGLPLSEKAIREGLKNAK-NLGRFEILE--KNGKMYILDG-AHNPHGAESLVRSLKLYFNGEPLSLVIGILDD 354 (442)
T ss_dssp --HHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEE--ETTEEEEECC-CCSHHHHHHHHHHHHHHCTTCCEEEEECCCTT
T ss_pred --HHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEE--cCCCeEEEEC-CcCHHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 8888 89999999999999998 999999996 2434566675 999999999988774 3688999997643
Q ss_pred -------------------------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCccccc
Q 017087 305 -------------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDE 359 (377)
Q Consensus 305 -------------------------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~ 359 (377)
++.+++++.+.++..+. .+..++|+++|++.+ ||+||++ ||++.
T Consensus 355 kd~~~~~~~l~~~~d~vi~~~~~~~r~~~~~~i~~~~~~~~~--~~~~~~~~~~Ai~~a------~d~VLv~---GS~~~ 423 (442)
T 1o5z_A 355 KNREDILRKYTGIFERVIVTRVPSPRMKDMNSLVDMAKKFFK--NVEVIEDPLEAIEST------ERATVVT---GSLFL 423 (442)
T ss_dssp SCHHHHHGGGTTTCSEEEECCCSSTTCCCHHHHHHHHHHHCS--CCEECSSHHHHHHTC------CSEEEEE---SCHHH
T ss_pred CCHHHHHHHHHhhCCEEEEECCCCCCCCCHHHHHHHHHhcCC--CceecCCHHHHHHhC------CCEEEEE---eeHHH
Confidence 23456777777765332 345678999998876 8999996 99998
Q ss_pred ccChH
Q 017087 360 FRNFE 364 (377)
Q Consensus 360 ~~~~~ 364 (377)
+.++.
T Consensus 424 ~~~~~ 428 (442)
T 1o5z_A 424 VGYVR 428 (442)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 16
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=6.7e-48 Score=377.63 Aligned_cols=315 Identities=14% Similarity=0.096 Sum_probs=221.0
Q ss_pred eeHHHHHHhhC---CCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeecc------------ccchhhhhhh------
Q 017087 29 MSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAF------ 87 (377)
Q Consensus 29 l~~~~~~~~~~---~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~------ 87 (377)
+.++..+.+.+ .++.++|+||||||||||++||+++|+++|+++++.++ .|.+++...+
T Consensus 22 l~~~~~~l~~lg~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~ 101 (428)
T 1jbw_A 22 HRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAF 101 (428)
T ss_dssp CHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 44554444333 24678999999999999999999999999999987666 2333322110
Q ss_pred --------h------cccCC----------CCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCC-CHHHH
Q 017087 88 --------H------CIALP----------SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNY 142 (377)
Q Consensus 88 --------~------~~~~~----------~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~g-t~e~~ 142 (377)
. ..+.. +.+.++|++|+|+|+++.......++|+++|||||++||+|+|| |+|+|
T Consensus 102 ~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~~~p~vaviTnI~~DHld~~g~t~e~i 181 (428)
T 1jbw_A 102 VRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLTEVALDHQKLLGHTITAI 181 (428)
T ss_dssp HHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCSCCCSEEEECCCCSCCHHHHCSSHHHH
T ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCccccccccCCCCEEEECcCcHhhhhhhCCCHHHH
Confidence 0 00000 01456899999999975333344579999999999999999999 99999
Q ss_pred HHHHHHhcccCCCCceEEEeCCChhhHHHHhc----cCcceeEeecCCCcccccc---cccceEEeccCCeeEEEEeecc
Q 017087 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTE---AKTASFEVPAVGVVSQLQLHNM 215 (377)
Q Consensus 143 ~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 215 (377)
+++|+++++ +++.+|+|.|||....+... ...++++|+.+ +..... .....|.+...+... ..+.+
T Consensus 182 a~~K~~i~~---~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l 254 (428)
T 1jbw_A 182 AKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRD--FSVPKAKLHGWGQRFTYEDQDGRI--SDLEV 254 (428)
T ss_dssp HHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--EEEEEEEECSSSEEEEEEETTEEE--EEEEE
T ss_pred HHHHhcccc---CCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCcc--ceeeccccccCCceEEEecCCccc--ccccc
Confidence 999999997 47899999999987665432 23466777642 221100 111223333222211 13478
Q ss_pred CCCChhHHHHHHHHHHHHHHHHc-C-----CCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhc
Q 017087 216 KVMGRHNYHNAAVAALSVLGLDI-G-----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (377)
Q Consensus 216 ~l~G~hn~~NalaA~~~a~~~~l-g-----i~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (377)
|++|.||++|+++|+ +++..+ | ++.+.|+++|++|+ +|||||++. .++.+++|| +|||+|++++++.
T Consensus 255 ~l~G~hn~~Na~aAi--a~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~~viiD~--AhNp~s~~a~l~~ 327 (428)
T 1jbw_A 255 PLVGDYQQRNMAIAI--QTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKIS--DTPLIVIDG--AHNPDGINGLITA 327 (428)
T ss_dssp SCCSTHHHHHHHHHH--HHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEE--TTTTEEEEC--CCSHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHH--HHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEec--CCCcEEEEC--CcCHHHHHHHHHH
Confidence 999999999999999 788888 9 99999999999999 999999995 355666653 7899999999887
Q ss_pred cc---CCcEEEEecCCCCCCCChHHHHHHHHh-C------CC-C-------------CcccccCCHHHHHHHHHHhcCCC
Q 017087 290 LK---GHKCVILLGGQAKFGYSGVLIWKTLVN-N------GL-S-------------IPCFAVANMKDAVNHARRMATNG 345 (377)
Q Consensus 290 ~~---~~r~i~v~G~~~~~g~~~~~i~~~l~~-~------g~-~-------------~~~~~~~~~~~ai~~a~~~~~~g 345 (377)
++ ++|+++|+|++.+ .+...+.+.+.. . +- . ..+..++|+++|++.+.+.+ +|
T Consensus 328 l~~~~~~~~i~V~g~~~~--kd~~~~~~~~~~~~d~vi~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~ai~~a~~~~-~~ 404 (428)
T 1jbw_A 328 LKQLFSQPITVIAGILAD--KDYAAMADRLTAAFSTVYLVPVPGTPRALPEAGYEALHEGRLKDSWQEALAASLNDV-PD 404 (428)
T ss_dssp HHHHCSSCCEEEEECSSS--TTHHHHHHHHHHHCSEEEECCCSCC---------------CBCSSHHHHHHHHHHHC-TT
T ss_pred HHHhcCCCEEEEEeeCCC--CCHHHHHHHHhhhCCEEEEECCCCCCCCCCHHHHHhhhCCeecCCHHHHHHHHHhhC-CC
Confidence 74 3678999998743 111122211111 0 00 0 01345689999999999989 99
Q ss_pred CEEEEcCCCcccccccCh
Q 017087 346 DAIVLSPGCASFDEFRNF 363 (377)
Q Consensus 346 divli~~g~~s~~~~~~~ 363 (377)
|+||++ ||++.+.+.
T Consensus 405 d~vLv~---GS~~~~~~~ 419 (428)
T 1jbw_A 405 QPIVIT---GSLYLASAV 419 (428)
T ss_dssp SCEEEE---ESHHHHHHH
T ss_pred CeEEEE---eeHHHHHHH
Confidence 999997 899887654
No 17
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=1.9e-46 Score=366.85 Aligned_cols=305 Identities=18% Similarity=0.147 Sum_probs=213.4
Q ss_pred eeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccc------------cchhhhhhhh--------
Q 017087 29 MSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFH-------- 88 (377)
Q Consensus 29 l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~-------- 88 (377)
...++.+.... ++.++|+||||||||||++||+++|+++|+++++.++. |.+++...+.
T Consensus 36 ~~~l~~lg~p~-~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~ 114 (422)
T 1w78_A 36 SLVAARLGVLK-PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIES 114 (422)
T ss_dssp HHHHHHHTCSS-CSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcc-cCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHH
Confidence 33444444433 56789999999999999999999999999998765542 2221111000
Q ss_pred cc-cCC--------------CCCCCccEEEEEeCccc-cccCCccccccEEEEecCCcchhcCCC-CHHHHHHHHHHhcc
Q 017087 89 CI-ALP--------------SSKPKFQVAVVEVSSYQ-MEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFS 151 (377)
Q Consensus 89 ~~-~~~--------------~~~~~~~~~ViE~~~~~-l~~~~~~~~p~i~ViTni~~dHl~~~g-t~e~~~~~K~~i~~ 151 (377)
.. ..+ +.+.++|++|+|+|.++ ++. ...++|+++|||||++||+|+|| |+|+|+.+|+++++
T Consensus 115 ~~~~~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~~~~d~-t~~~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~ 193 (422)
T 1w78_A 115 ARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDA-TNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR 193 (422)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTSG-GGGSCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC
T ss_pred HhccCCCChHHHHHHHHHHHHHHcCCCEEEEecCCCccccc-ccCCCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhcc
Confidence 00 000 01346799999999755 443 34579999999999999999999 99999999999997
Q ss_pred cCCCCceEEEeCCChhh--HHHHhccCcceeEeecCCCcccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHH
Q 017087 152 HMVNTKLGLLPFGNQHL--NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA 229 (377)
Q Consensus 152 ~~~~~~~~v~n~dd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA 229 (377)
+++.+|+|.||+.. ...+.....++++|+.+ +.+..+ ...+.+...+.. + ..++++ .||++|+++|
T Consensus 194 ---~~~~~v~~~d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~--~~~~~~~~~~~~--~--~~l~l~-~hn~~Na~aA 261 (422)
T 1w78_A 194 ---SEKPAIVGEPEMPSTIADVAQEKGALLQRRGVE--WNYSVT--DHDWAFSDAHGT--L--ENLPLP-LVPQPNAATA 261 (422)
T ss_dssp ---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTT--BEEEEC--SSCEEEEETTEE--E--EEECCC-SSCHHHHHHH
T ss_pred ---CCCcEEEcCccHHHHHHHHHHHcCCceEEeCcc--eeeecc--CceEEEecCCcc--c--ccCCch-HHHHHHHHHH
Confidence 47788998877642 22222234466777642 222111 112322222211 1 357888 9999999999
Q ss_pred HHHHHHHHc--CCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc----CCcEEEEecCCC
Q 017087 230 ALSVLGLDI--GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQA 303 (377)
Q Consensus 230 ~~~a~~~~l--gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G~~~ 303 (377)
+ +++..+ |++.+.|+++|++|+ +|||||++. .++ .+|+|+ +|||+|++++++.+. ++|+++|+|.+.
T Consensus 262 i--a~~~~~~~gi~~~~i~~~L~~~~-~~gR~e~~~--~~~-~~i~D~-Ahnp~s~~~~l~~l~~~~~~~~~i~V~g~~~ 334 (422)
T 1w78_A 262 L--AALRASGLEVSENAIRDGIASAI-LPGRFQIVS--ESP-RVIFDV-AHNPHAAEYLTGRMKALPKNGRVLAVIGMLH 334 (422)
T ss_dssp H--HHHHHHTCCCCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEEC-CCSHHHHHHHHHHHHHSCSCSCEEEEECCBT
T ss_pred H--HHHHHhCCCCCHHHHHHHHHhCC-CCceEEEEe--CCC-eEEEEC-CCCHHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 9 677765 899999999999999 899999995 344 566675 999999999977653 368999999754
Q ss_pred C-------------------------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccc
Q 017087 304 K-------------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFD 358 (377)
Q Consensus 304 ~-------------------------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~ 358 (377)
+ ++.+++++.+.+.. ...++|+++|++.+.+.+++||+||++ ||++
T Consensus 335 ~kd~~~~~~~l~~~~d~vi~~~~~~~r~~~~~~l~~~~~~------~~~~~~~~~ai~~a~~~~~~~d~vLv~---GS~~ 405 (422)
T 1w78_A 335 DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGN------GKSFDSVAQAWDAAMADAKAEDTVLVC---GSFH 405 (422)
T ss_dssp TSCHHHHHHHHHTTCSEEEECCCCSSSBCCHHHHHHHHSS------CEECSSHHHHHHHHHHHCCTTCEEEEE---SSHH
T ss_pred CCCHHHHHHHHHhhCCEEEEECCCCCCCCCHHHHHHHHhh------cccCCCHHHHHHHHHHhcCCCCEEEEE---eeHH
Confidence 3 11233444443321 235689999999999999999999997 8888
Q ss_pred cccCh
Q 017087 359 EFRNF 363 (377)
Q Consensus 359 ~~~~~ 363 (377)
.+.+.
T Consensus 406 ~~~~~ 410 (422)
T 1w78_A 406 TVAHV 410 (422)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.62 E-value=1.6e-15 Score=128.23 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=71.6
Q ss_pred HHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhccc----CCcEEEEecCCC-----C--------
Q 017087 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQA-----K-------- 304 (377)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~r~i~v~G~~~-----~-------- 304 (377)
.++|+++|++|+|++||||++. ..++++||||| ||||++++++++.++ ++|+++|||... +
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~-~~~g~~vi~Dy-aHnP~si~a~l~al~~~~~~~riivvf~~g~~s~r~k~~~~~~~~ 88 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKG-VVNNITVYDDF-AHHPTAITATIDALRAKVGQQRILAVLEPRSNTMKMGVHKHELAT 88 (163)
T ss_dssp ----------------CCEEEE-EETTEEEEEEC-CCSHHHHHHHHHHHHHHHTTSCEEEEECCC---------CHHHHH
T ss_pred HHHHHHHHHhCCCCCCCeEEEe-cCCCcEEEEcC-CCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcchhhHHHHHHHHH
Confidence 4678999999999999999996 36789999995 999999998887653 468899987431 1
Q ss_pred ----------CCCCh--HHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccC
Q 017087 305 ----------FGYSG--VLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRN 362 (377)
Q Consensus 305 ----------~g~~~--~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~ 362 (377)
.|... ..+.+.+.. .+.++.+++|+++|++.+.+.+++||+||++ |+++|+.+.+
T Consensus 89 ~~~~aD~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~eai~~~~~~~~~gDvVLv~-Gsg~~~~~~~ 155 (163)
T 3mvn_A 89 SLQDADSVFIYQPPTIEWQVSEVLAN--LAQPAISADDVDELVMRIVQQAKPNDHILIM-SNGAFGGIHQ 155 (163)
T ss_dssp HHTTCSEEEEECC----CCHHHHHTT--CCSCEEEESSHHHHHHHHHHHCCTTCEEEEE-CSSCGGGHHH
T ss_pred HHhcCCEEEEECCCCcccCHHHHHhh--CCCCeEEECCHHHHHHHHHHhCCCCCEEEEE-CCCCHHHHHH
Confidence 11110 012222222 2235667899999999999999999999995 8888887654
No 19
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=95.19 E-value=0.0033 Score=61.26 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=48.6
Q ss_pred hhhhhhcccC-CCcHHHHHHHHcCCce--eeHHHHHHhhCC----CCCcEEEEeCCCChHhH-HHHHHHHHHhCC
Q 017087 3 MLWLFLLEFQ-LKATGLACLLQSGKRV--MSELDFAAQVIP----RSIKILAVTGTNGKSTV-VTFVGQMLNHLG 69 (377)
Q Consensus 3 ~~~~~~~~~~-~~~p~~~~a~~~~~~~--l~~~~~~~~~~~----~~~~~I~VTGTnGKTTT-~~~l~~iL~~~g 69 (377)
++||.++-.+ .+++....|+++|+++ ..++++....++ +..-+|+|| |||||+| +.+|..-|++.-
T Consensus 74 ~lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIs-T~Gksp~la~~ir~~ie~~l 147 (457)
T 1pjq_A 74 WLAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVS-SGGTSPVLARLLREKLESLL 147 (457)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHHS
T ss_pred cEEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEE-CCCCChHHHHHHHHHHHHhc
Confidence 4566666555 2555667899999998 788887665542 233399999 9999999 899998888753
No 20
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.69 E-value=0.067 Score=49.19 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=31.1
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
...++|+|+| -.|||||+.-|+..|.+.|+++.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3668999996 67899999999999999999997644
No 21
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=93.33 E-value=0.086 Score=46.80 Aligned_cols=41 Identities=29% Similarity=0.407 Sum_probs=32.2
Q ss_pred HHhhCCCCCcEEEEeCCC---ChHhHHHHHHHHHHhCCCCeeee
Q 017087 35 AAQVIPRSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 35 ~~~~~~~~~~~I~VTGTn---GKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+.++..++++.|-||||. |||+++.-|.+.|++.|++++..
T Consensus 18 ~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~f 61 (251)
T 3fgn_A 18 ENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVC 61 (251)
T ss_dssp ----CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 344554577899999986 99999999999999999998654
No 22
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.83 E-value=0.14 Score=42.56 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=29.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+.+++|+|+|.. ||||+...|...|+..|++++..-
T Consensus 2 ~~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 2 NAMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 356899999974 999999999999999999886544
No 23
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.62 E-value=0.12 Score=43.59 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=28.1
Q ss_pred CcEEEEe---CCCChHhHHHHHHHHHHhCCCCeeee
Q 017087 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 43 ~~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+++|+|+ |-.||||++..|+..|...|.++.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3688888 55779999999999999999998653
No 24
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=92.54 E-value=0.13 Score=44.92 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.5
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeee
Q 017087 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 41 ~~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
.+++.|-|||| .|||+++.-|.+.|++.|++++..
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 45788999998 599999999999999999998653
No 25
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.10 E-value=0.4 Score=43.54 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=30.1
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeee
Q 017087 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 41 ~~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+..++|.||++ .||||++.-|+..|.+.|.++.+.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 45689999986 589999999999999999988553
No 26
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=91.86 E-value=0.14 Score=44.06 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=27.3
Q ss_pred cEEEEeCC---CChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|.||++ .|||||+.-|+..|.+.|+++.+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 57888876 68999999999999999999865
No 27
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=91.85 E-value=1.2 Score=41.40 Aligned_cols=106 Identities=20% Similarity=0.137 Sum_probs=63.1
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeeecc----------ccchhhhhhhh-------cccCCCCCCCccE
Q 017087 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN----------LGNPLSEAAFH-------CIALPSSKPKFQV 101 (377)
Q Consensus 42 ~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~g~----------~g~~~~~~~~~-------~~~~~~~~~~~~~ 101 (377)
+.+.|.|+|| .|||+|+..|.+.|++.|++++..++ .|.++...... .........++|+
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~ 247 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI 247 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence 4678999997 59999999999999999999866443 12221111000 0000000246788
Q ss_pred EEEEeCcccccc---C----Cc--cccccEEEEec-CCcchhcCC------CCHHHHHHHHHH
Q 017087 102 AVVEVSSYQMEI---P----NK--YFCPTVSVVLN-LTPDHLERH------KTMKNYALTKCH 148 (377)
Q Consensus 102 ~ViE~~~~~l~~---~----~~--~~~p~i~ViTn-i~~dHl~~~------gt~e~~~~~K~~ 148 (377)
.|+|-. +++.- . .. -.+|+..|+.. -++.|++.| +++++..+.-..
T Consensus 248 ivVEGq-Ggl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~ 309 (350)
T 2g0t_A 248 VFVEGQ-GALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIET 309 (350)
T ss_dssp EEEECC-SCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHH
T ss_pred EEEccC-eeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHH
Confidence 999977 43321 0 01 14789888866 566666544 566665554433
No 28
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.32 E-value=0.34 Score=43.35 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=30.2
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeee
Q 017087 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 41 ~~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+..++|.||++ .||||++.-|+..|.+.|.++.+.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 46789999975 699999999999999999988653
No 29
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.16 E-value=0.32 Score=43.91 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeee
Q 017087 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 41 ~~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
++.++|.||++ .||||++.-|+..|.+.|.++.+.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 45689999876 589999999999999999988653
No 30
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.14 E-value=0.2 Score=43.55 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=28.2
Q ss_pred CCCcEEEEeC---CCChHhHHHHHHHHHHhC-CCCeee
Q 017087 41 RSIKILAVTG---TNGKSTVVTFVGQMLNHL-GIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VTG---TnGKTTT~~~l~~iL~~~-g~~~~~ 74 (377)
+..++|+|++ -.||||++..|+..|... |+++.+
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vll 39 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLA 39 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEE
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEE
Confidence 3567899984 578999999999999998 988754
No 31
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.48 E-value=0.24 Score=43.69 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=29.2
Q ss_pred CCCcEEEEeCCC---ChHhHHHHHHHHHHhCCCCeeee
Q 017087 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 41 ~~~~~I~VTGTn---GKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+..++|+|+++. ||||++..|+..|...|+++.+.
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 356899998654 79999999999999999998653
No 32
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=90.47 E-value=0.48 Score=41.87 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=32.8
Q ss_pred HHHHHhhCCCCCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeee
Q 017087 32 LDFAAQVIPRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 32 ~~~~~~~~~~~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
.+...++. +..++|+|+++ .||||++.-|+..|.+.|+++.+.
T Consensus 8 ~~~a~~l~-~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 8 EEIKERLG-KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp HHHHHHHT-TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhhhhc-cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 33444444 45679999875 469999999999999999998653
No 33
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=89.79 E-value=0.35 Score=41.82 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=27.2
Q ss_pred cEEEEeCC---CChHhHHHHHHHHHHhCCCCeeee
Q 017087 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 44 ~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
++|+|+++ .||||++..|+..|.+.|+++.+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 57888764 589999999999999999998653
No 34
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=89.28 E-value=0.39 Score=42.22 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=30.6
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeee
Q 017087 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 41 ~~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+..+.|-|||| .|||+++.-|.+.|++.|++++.+
T Consensus 19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 35688999998 699999999999999999998654
No 35
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.92 E-value=0.46 Score=43.67 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=29.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+..+|+|+|.+ |||||+..|+..|...|.++.+.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45689999865 899999999999999998886554
No 36
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.66 E-value=0.21 Score=45.01 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.9
Q ss_pred eCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
-|-.||||++..|+..|...|+++.+
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVll 70 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLM 70 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEE
Confidence 35689999999999999999999864
No 37
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=88.31 E-value=0.47 Score=42.64 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=27.2
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+|+ |-.||||++..|+..|...|+++.+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll 38 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAV 38 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 589998 4668999999999999999999864
No 38
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.22 E-value=0.55 Score=42.84 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=29.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
...+|+|+|.+ |||||+..|+..|...|.++.+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 34689999965 799999999999998888876544
No 39
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=87.65 E-value=0.5 Score=41.57 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=26.5
Q ss_pred cEEEEeC---CCChHhHHHHHHHHHHhCCCCeeee
Q 017087 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 44 ~~I~VTG---TnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
++|+|++ -.||||++..|+..|...|.++.+.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 5677765 4589999999999999999998653
No 40
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=86.89 E-value=0.67 Score=40.52 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.5
Q ss_pred cEEEEeC---CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+|++ -.||||++..|+..|...|+++.+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 5788865 468999999999999999999864
No 41
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=86.65 E-value=0.69 Score=39.40 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=24.6
Q ss_pred EEEEe---CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 45 ~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+|+|+ |-.||||++..|+..|...| ++.+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vll 33 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLL 33 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEE
Confidence 56665 66799999999999999999 8755
No 42
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=86.62 E-value=0.61 Score=41.19 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=27.6
Q ss_pred CCCcEEEEeCCC---ChHhHHHHHHHHHHhCCCCeee
Q 017087 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VTGTn---GKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+..++|+|++.+ ||||++..|+..|. .|+++.+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vll 60 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLL 60 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEE
Confidence 456899997665 79999999999999 9998864
No 43
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.36 E-value=1.1 Score=37.64 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=27.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeee
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~ 74 (377)
....+|+|+|.+ ||||++.+|...|...|..+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 345799999965 8999999999999877765543
No 44
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=85.26 E-value=1 Score=41.80 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=31.3
Q ss_pred CCCcEEEEe---CCCChHhHHHHHHHHHHhCCCCeeeeccc
Q 017087 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78 (377)
Q Consensus 41 ~~~~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~g~~ 78 (377)
+..++|.|+ |-.||||++.-++..|...|+++.+...-
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 466778887 56789999999999999999998765543
No 45
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=85.05 E-value=0.85 Score=42.70 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=29.8
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 41 ~~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
++.++|+|++. .||||++.-++..|...|.++.+.-
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 35689999864 5799999999999999999886543
No 46
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=84.93 E-value=0.99 Score=40.77 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=28.2
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+..++|+|+| -.||||++.-|+..|.+.|+++.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vll 74 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQ 74 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 3567888874 568999999999999999999854
No 47
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.92 E-value=1 Score=40.77 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=27.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh-CCCCeeeec
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~-~g~~~~~~g 76 (377)
+..+|+++|.| |||||+..|+..+.. .|.++.+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34578887754 899999999999985 898886544
No 48
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=84.65 E-value=0.74 Score=41.57 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=23.4
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCC
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~ 71 (377)
++..+|+|||. .||||++.+|...|...|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~ 35 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVK 35 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 34579999995 59999999999998765543
No 49
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=83.55 E-value=1.2 Score=42.53 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=29.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
..+|.++|.+ |||||+..|+..|...|.++.+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5689999955 699999999999999999986644
No 50
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=83.47 E-value=1.6 Score=36.93 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=26.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCee
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~ 73 (377)
++..+|+|.|-| ||||+..+|..++...|..++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g 54 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAE 54 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceE
Confidence 356799999965 899999999999987664443
No 51
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=83.11 E-value=1.2 Score=41.23 Aligned_cols=107 Identities=11% Similarity=0.033 Sum_probs=62.8
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhCCCCeeeeccc---------cchhhhhh-------hhcccCCCCCCCccEE
Q 017087 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGNL---------GNPLSEAA-------FHCIALPSSKPKFQVA 102 (377)
Q Consensus 42 ~~~~I~VTGT---nGKTTT~~~l~~iL~~~g~~~~~~g~~---------g~~~~~~~-------~~~~~~~~~~~~~~~~ 102 (377)
+.+.|.|+|| .|||+|+..|.+.|++.|++++..++- |.|..... .+.... ....++|+.
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~-~~~~~~d~v 229 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVM-RYGKNYDIL 229 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHH-HHTTTCSEE
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHH-HhccCCCEE
Confidence 3578999997 599999999999999999998654331 22221100 000000 113467899
Q ss_pred EEEeCcc---ccccCC--c--ccccc-EEEEecCCcchhcCC-----CCHHHHHHHHHHh
Q 017087 103 VVEVSSY---QMEIPN--K--YFCPT-VSVVLNLTPDHLERH-----KTMKNYALTKCHL 149 (377)
Q Consensus 103 ViE~~~~---~l~~~~--~--~~~p~-i~ViTni~~dHl~~~-----gt~e~~~~~K~~i 149 (377)
++|-..+ ...... . -.+|+ +.+....+.-|++.| +++++....-..+
T Consensus 230 lVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l 289 (349)
T 2obn_A 230 HIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETV 289 (349)
T ss_dssp EECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHH
T ss_pred EEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHH
Confidence 9996532 121000 0 13677 666666777777444 3666665555444
No 52
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=83.03 E-value=1.3 Score=40.54 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.7
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 44 ~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
++|.|+ |-.||||++.-++..|.+.|+++.+...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 677776 6778999999999999999999876554
No 53
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=82.55 E-value=1.3 Score=39.63 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=26.1
Q ss_pred CcEEEEe--CCCChHhHHHHHHHHHHhCCCCeee
Q 017087 43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 43 ~~~I~VT--GTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+++|+|+ |-.||||++.-|+..|.+.|+++.+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVll 35 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMI 35 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence 3556664 4679999999999999999999854
No 54
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=82.30 E-value=1.9 Score=35.69 Aligned_cols=34 Identities=26% Similarity=0.223 Sum_probs=28.3
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
.+++++|+|. .||||+...|...|...|.+++..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i 40 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEE
Confidence 3679999997 589999999999998888887543
No 55
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=82.18 E-value=1.2 Score=39.14 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=25.2
Q ss_pred cEEEE--eCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAV--TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~V--TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++|+| -|-.||||++..|+..|...|+++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vll 34 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV 34 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEE
Confidence 34555 45679999999999999999998854
No 56
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=82.04 E-value=1.3 Score=40.70 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=27.4
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 44 ~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
++|.|+ |-.||||++..++..|.+.|+++.+...
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~ 55 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIST 55 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 445555 5689999999999999999999876543
No 57
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=81.77 E-value=1.5 Score=41.25 Aligned_cols=34 Identities=9% Similarity=0.199 Sum_probs=27.4
Q ss_pred CCCcEEEEe---CCCChHhHHHHHHHHHHh------CCCCeee
Q 017087 41 RSIKILAVT---GTNGKSTVVTFVGQMLNH------LGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VT---GTnGKTTT~~~l~~iL~~------~g~~~~~ 74 (377)
+..++|+|+ |-.|||||+..|++.|.. .|+++.+
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVll 148 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILV 148 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEE
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence 356799998 456899999999999984 5777644
No 58
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=81.77 E-value=0.86 Score=43.09 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCCcEEEEe---CCCChHhHHHHHHHHHH------hCCCCeee
Q 017087 41 RSIKILAVT---GTNGKSTVVTFVGQMLN------HLGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VT---GTnGKTTT~~~l~~iL~------~~g~~~~~ 74 (377)
...++|+|+ |-.|||||+..|++.|. ..|+++.+
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVll 151 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILV 151 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEE
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence 466899999 66799999999999998 46777643
No 59
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=81.19 E-value=0.84 Score=42.56 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=27.0
Q ss_pred CcEEEEeC---CCChHhHHHHHHHHHHhCCCCeee
Q 017087 43 IKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 43 ~~~I~VTG---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+++|+|++ -.||||++.-|+..|...|++|.+
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLl 35 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLY 35 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 36777775 468999999999999999999865
No 60
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=81.00 E-value=1.9 Score=39.17 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=28.0
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
..++++.|-| |||||...|+..+...+.++.+.|
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4588888866 899999999999998777776555
No 61
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=80.82 E-value=0.16 Score=45.57 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=39.8
Q ss_pred hhhhhhcccC-CCcHHHHHHHHc---CCce--eeHHHHHHhhCC----CCC-cEEEEeCCCChHhHH-HHHHHHHHh
Q 017087 3 MLWLFLLEFQ-LKATGLACLLQS---GKRV--MSELDFAAQVIP----RSI-KILAVTGTNGKSTVV-TFVGQMLNH 67 (377)
Q Consensus 3 ~~~~~~~~~~-~~~p~~~~a~~~---~~~~--l~~~~~~~~~~~----~~~-~~I~VTGTnGKTTT~-~~l~~iL~~ 67 (377)
++||..+..+ .+.+-...|+++ ++++ ..++++..-.++ +.. -+|+|| |||||++. ..|..-+++
T Consensus 108 dlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f~~Pa~~~~g~~l~IaIS-T~Gksp~lA~~ir~~ie~ 183 (274)
T 1kyq_A 108 YIIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILIS-TNGLSPRFGALVRDEIRN 183 (274)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBSEECCEEEEETTTEEEEEE-ESSSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCeeEeeeEEEeCCCEEEEEE-CCCCCcHHHHHHHHHHHH
Confidence 3445444433 233445678888 9999 777876653322 233 399999 99998664 555555544
No 62
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=80.64 E-value=1.6 Score=36.21 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=24.6
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
.|+|+| -.||||.+.+|++.|...|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 588999 57999999999999999888764
No 63
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.60 E-value=2.3 Score=39.06 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=28.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+..+|++.|-| |||||...|+..++..+.++.+.|
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45688888865 799999999999999888876554
No 64
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=78.88 E-value=1.9 Score=35.51 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=27.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeee
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+++++|+|.+ ||||+..+|...+...|++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 3689999975 79999999999999988877543
No 65
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=78.17 E-value=2.5 Score=39.32 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=28.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
...+|++.|-| |||||...|+..+...+.++.+.|
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 34588888866 899999999999998777776554
No 66
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=77.38 E-value=2.4 Score=35.60 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=26.4
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
+...|.|+| -.||||.+.+|+.-|...|..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 346899999 4799999999999998888765
No 67
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=76.97 E-value=2.2 Score=39.64 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=27.8
Q ss_pred CcEEEEe---CCCChHhHHHHHHHHHH--hCCCCeeeecc
Q 017087 43 IKILAVT---GTNGKSTVVTFVGQMLN--HLGIEAFVGGN 77 (377)
Q Consensus 43 ~~~I~VT---GTnGKTTT~~~l~~iL~--~~g~~~~~~g~ 77 (377)
.++|.|| |-.||||++.-++..|. +.|+++.+...
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3455555 57899999999999999 99999876443
No 68
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=76.85 E-value=2.5 Score=34.73 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=24.3
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
.|+++| -.||||.+.+|+.-|...|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 578888 46999999999999988887653
No 69
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=75.70 E-value=2.8 Score=40.13 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=28.8
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
..+|.++|. .|||||+.-|+..|...|.++.+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 468888885 4799999999999999999986544
No 70
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=75.13 E-value=3.4 Score=40.20 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=28.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
...+|+|.|-| ||||+...|+.++...+.++.+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 34588898876 799999999999998877776543
No 71
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=75.07 E-value=3.4 Score=39.53 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=27.7
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhC-CCCeee
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL-GIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~-g~~~~~ 74 (377)
+.++|.|+| -.|||||+.-|+..|... |+++.+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVll 134 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 345888877 468999999999999998 999865
No 72
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=74.73 E-value=2.6 Score=38.77 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=25.4
Q ss_pred CCCChHhHHHHHHHHHHhCCCCeeeeccc
Q 017087 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGNL 78 (377)
Q Consensus 50 GTnGKTTT~~~l~~iL~~~g~~~~~~g~~ 78 (377)
|-.||||++.-++..|.+.|+++.+...-
T Consensus 25 GGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 67899999999999999999998776654
No 73
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=74.71 E-value=3.3 Score=33.78 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=25.4
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
+...|+++|. .||||.+.+|+..|...|..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~ 36 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 36 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcE
Confidence 3468899995 589999999999998777654
No 74
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=74.04 E-value=4.7 Score=33.59 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=26.1
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCC
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~ 71 (377)
+...+|+|+|- .||||+..+|+..|...|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 45679999996 68999999999999876754
No 75
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=73.89 E-value=3.1 Score=34.84 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.2
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
....|+|+| -.||||.+.+|+.-|...+..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 346899999 4799999999999998877765
No 76
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=72.65 E-value=1.5 Score=37.82 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.3
Q ss_pred eCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 49 TGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
.|-.||||++.-|+..|.+.|+++.+
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~Vll 33 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIYA 33 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45667999999999999999998754
No 77
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=72.54 E-value=4.3 Score=36.55 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=28.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
..+|+|+|- .||||++..|+..+...|.++.+.+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 458899884 5899999999999999888876544
No 78
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=72.53 E-value=2.8 Score=35.11 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.2
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHhCC
Q 017087 45 ILAVTGTN--GKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 45 ~I~VTGTn--GKTTT~~~l~~iL~~~g 69 (377)
+++|+|-| ||||+..+|...++..|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 57788866 59999999999998777
No 79
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=71.54 E-value=4 Score=33.37 Aligned_cols=30 Identities=47% Similarity=0.544 Sum_probs=24.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCCee
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
+.|.|+|. .||||.+..|+.-|...|+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 33 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEE
Confidence 46788884 7999999999999988777653
No 80
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=70.79 E-value=2.6 Score=36.83 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=20.9
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
...+|+|||. .||||++.+|+..|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999994 699999999988764
No 81
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=70.78 E-value=2.2 Score=35.61 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=19.8
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
.+|+|+|. .||||.+.+|+. + |..+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~ 28 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYV 28 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEE
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEE
Confidence 47999996 489999999988 5 5544
No 82
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=70.47 E-value=3.3 Score=33.32 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=19.8
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
..+.+|+|+|. .||||.+.+|+.-|
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999995 78999999999877
No 83
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=69.64 E-value=3.3 Score=34.73 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=22.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
...+|+|||- .||||++.+|+..| |..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g~~v 40 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---GAHV 40 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---CCEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---CCEE
Confidence 4569999994 79999999999865 5544
No 84
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=69.56 E-value=6.7 Score=32.08 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
....|.++|. .||||.+..|+..|...|.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4568999995 789999999999999888765
No 85
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=69.12 E-value=4.1 Score=36.59 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.2
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCC
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL~~~g 69 (377)
+...+|+|+|. .||||++.+|...|...|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 34569999994 699999999999998643
No 86
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=68.91 E-value=3.3 Score=34.46 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+|+++|-| ||||+..+|...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999976 7999999998875
No 87
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=68.78 E-value=3.9 Score=37.18 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhC
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~ 68 (377)
+...+|+|.|.| ||||+..+|..++...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 355799999965 8999999999999753
No 88
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=68.59 E-value=5.5 Score=38.48 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=43.0
Q ss_pred cHHHHHHHHcCCce--ee---------HHHHHHhhC-CCCCcEEEEeCC------CChHhHHHHHHHHHHhCCCCeee
Q 017087 15 ATGLACLLQSGKRV--MS---------ELDFAAQVI-PRSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 15 ~p~~~~a~~~~~~~--l~---------~~~~~~~~~-~~~~~~I~VTGT------nGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
.|--.-|.+.|++- +. .++.+.++- +++.++|.||.+ -|||||+.=|+..|.+.|.++.+
T Consensus 17 ~pI~~ia~~~gi~~~~lE~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLL 94 (557)
T 3pzx_A 17 KPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMV 94 (557)
T ss_dssp CCHHHHHHHTTCCGGGEEEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCHHHHHHHcCCCHHHHHHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEE
Confidence 45556677888753 11 133444432 246789999997 47999999999999999999865
No 89
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=67.83 E-value=5.6 Score=36.52 Aligned_cols=36 Identities=36% Similarity=0.397 Sum_probs=29.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
.+..+|+++|.+ ||||+...|...+...|.++.+.+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 466799999975 799999999999998888876544
No 90
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=67.42 E-value=6.6 Score=34.72 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=30.7
Q ss_pred CCCcEEEEeC----CCChHhHHHHHHHHHHhCCCCeee
Q 017087 41 RSIKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
..++-|-||| +=||+-|++-|..+|++.|+++.+
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~ 58 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCccee
Confidence 4678999999 689999999999999999999854
No 91
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=67.19 E-value=6.5 Score=35.89 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHh
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNH 67 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~ 67 (377)
..+|||+|. .||||++.+|..+|..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 349999995 5899999999999974
No 92
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=66.96 E-value=7.4 Score=35.15 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=27.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
..+|+|.|-| ||||+...|+..+...+.++.+.|
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4588888865 799999999999998777765544
No 93
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=66.77 E-value=5.9 Score=35.66 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=28.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
..+|+++|- .||||++..|+..+...|.++.+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 458888884 5899999999999999998886544
No 94
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=66.70 E-value=9.6 Score=31.94 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=26.1
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHH-hCCCCe
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQMLN-HLGIEA 72 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL~-~~g~~~ 72 (377)
....+|.|+| -.||||.+.+|+..|. ..|..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~ 57 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHA 57 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcE
Confidence 3457899999 4799999999999998 667654
No 95
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=66.67 E-value=3.4 Score=34.55 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.3
Q ss_pred cEEEEeCC--CChHhHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQ 63 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~ 63 (377)
.+|++||. .||||++.+|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 47999996 589999999976
No 96
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=66.57 E-value=5.8 Score=34.72 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=26.1
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
.+..|.++| -.||||.+..|+.-|...|..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 356788888 57999999999999988887653
No 97
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=66.56 E-value=4.3 Score=33.77 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.4
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
++|+|||. .||||++.+|+..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 38999996 69999999999877
No 98
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=66.54 E-value=6.1 Score=38.52 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=27.9
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
+.++|+|+|. .|||||+.-|+..|...|.++.+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3458999884 6899999999999999999876543
No 99
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=65.71 E-value=6.7 Score=36.18 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
.+.++|+|+| -.||||++.-|...|...|.++.+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4567999999 45899999999999998999876543
No 100
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=65.22 E-value=6.7 Score=37.34 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=28.1
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
..+|+++|- .|||||+..|+..|...|.++.+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 457888874 5899999999999999998886544
No 101
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=64.19 E-value=5.3 Score=34.54 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+|+|+|-| ||||++.+|...|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999965 8999999999987
No 102
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=63.65 E-value=8.6 Score=38.15 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=27.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
..+++.++| -.||||++..++..|.+.|+++.+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLl 41 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLL 41 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEE
Confidence 345666655 589999999999999999999865
No 103
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=63.61 E-value=5.6 Score=33.90 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
..+-.||+|| -.||||++.+++. .|..+
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~----~g~~v 36 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA----RGASL 36 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 4677999999 5789999998876 46654
No 104
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=63.39 E-value=6 Score=32.95 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+|+|+|-+ ||||.+.+|...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999965 6999999999887
No 105
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=62.78 E-value=9.3 Score=35.01 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=29.1
Q ss_pred CCCcEEEEeCCCC--hHhHHHHHHHHHHhCCCCeeeec
Q 017087 41 RSIKILAVTGTNG--KSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 41 ~~~~~I~VTGTnG--KTTT~~~l~~iL~~~g~~~~~~g 76 (377)
.+..+++|+|.+| |||+..+|...+...+.++.+.|
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 4567999999875 99999999999988776765544
No 106
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=62.57 E-value=5.8 Score=31.70 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=18.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
.+|.|+|. .||||++.+|+.-|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899995 68999999998776
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=62.50 E-value=5.1 Score=33.53 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+|+|+|-| ||||+..+|...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999965 69999999999885
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=62.34 E-value=5.8 Score=32.67 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.3
Q ss_pred EEEEeCCCC--hHhHHHHHHHHHH
Q 017087 45 ILAVTGTNG--KSTVVTFVGQMLN 66 (377)
Q Consensus 45 ~I~VTGTnG--KTTT~~~l~~iL~ 66 (377)
.++++|-|| |||+..+|...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999876 9999999999984
No 109
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=62.31 E-value=3.6 Score=33.95 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.4
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 44 ~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
++++|+|-| ||||+..+|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468899976 69999999998875
No 110
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=61.45 E-value=8.6 Score=33.78 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCCcEEEEeC----CCChHhHHHHHHHHHHhCCCCeee
Q 017087 41 RSIKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 41 ~~~~~I~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+.++-|-||| +-||+-|++-|..+|++.|+++.+
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~ 58 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEEC
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEE
Confidence 4678999999 569999999999999999999843
No 111
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=61.08 E-value=4.5 Score=34.60 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=15.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHH-HHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVG-QMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~-~iL~ 66 (377)
...+|+++|-| ||||+..+|. ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 44689999987 7999999998 7763
No 112
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=60.59 E-value=9.3 Score=31.94 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=24.2
Q ss_pred EEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
|.+-| -.||||-+.+|+.-|++.|.++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 45556 579999999999999999998754
No 113
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=59.54 E-value=11 Score=32.05 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=26.7
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
...|.+.| -.||||.+..|...|...|+++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 46888999 46899999999999999998764
No 114
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=59.16 E-value=5.1 Score=33.25 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+|+|+|.+ ||||++.+|...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999965 8999999998776
No 115
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=58.69 E-value=6 Score=32.65 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 41 ~~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
.+..+|+|+|. .||||++.+|+.. |..+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g~~~ 35 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----GYPV 35 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----TCCE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----CCEE
Confidence 35578999995 6999999998874 6654
No 116
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=58.68 E-value=9.8 Score=33.45 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhC
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~ 68 (377)
++..+++|+|-| ||||+..+|...+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 356799999966 8999999999988753
No 117
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=58.49 E-value=7.5 Score=35.90 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=28.7
Q ss_pred CcEEEEe--CCCChHhHHHHHHHHHH--hCCCCeeeeccc
Q 017087 43 IKILAVT--GTNGKSTVVTFVGQMLN--HLGIEAFVGGNL 78 (377)
Q Consensus 43 ~~~I~VT--GTnGKTTT~~~l~~iL~--~~g~~~~~~g~~ 78 (377)
.+++.++ |-.||||++..++..|. ..|.++.+...-
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4555555 56789999999999999 899998766554
No 118
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=57.99 E-value=8.6 Score=31.86 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.9
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCC
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g 69 (377)
...|.|+| -.||||.+..|+.-|...|
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 35789999 5899999999999987665
No 119
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=57.66 E-value=6.6 Score=37.45 Aligned_cols=33 Identities=15% Similarity=0.373 Sum_probs=27.2
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCeeeec
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
.+|+|+| -.|||||+.-|+..|...|.++.+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4788887 46899999999999999898886543
No 120
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=57.38 E-value=9 Score=32.29 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=19.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
..+|+|+|. .||||.+.+|+..|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999996 57999999998876
No 121
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=57.33 E-value=15 Score=30.51 Aligned_cols=34 Identities=15% Similarity=-0.062 Sum_probs=22.4
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+.+++.++|+ .||||..--+..=+..+|.++.+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 4579999999 555555544444455578887554
No 122
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=56.85 E-value=13 Score=30.18 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.9
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCC
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~~g~ 70 (377)
..|.|+|. .||||.+..|+.-|...|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 32 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV 32 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 57888884 7999999999999987764
No 123
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=55.76 E-value=14 Score=30.98 Aligned_cols=35 Identities=17% Similarity=-0.013 Sum_probs=26.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
...+++|+|.| ||||+...+...+...+.++.+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45689999975 699999999977766665665444
No 124
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=55.74 E-value=8.8 Score=31.39 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHH
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
+...|.++| -.||||.+.+|+.-|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456888988 469999999998877
No 125
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=55.31 E-value=9 Score=30.49 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.1
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 017087 45 ILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTGT--nGKTTT~~~l~~iL 65 (377)
.|.|+|. .||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 5788885 69999999999877
No 126
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=55.24 E-value=13 Score=33.45 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+|+|+|.| ||||++.+|..++.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45699999965 69999999999986
No 127
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=55.06 E-value=9.3 Score=32.02 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
++..+|+|+|.+ ||||++.+|...+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356799999976 69999999887653
No 128
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=54.97 E-value=13 Score=32.02 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=25.3
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
...++.++| -.||||++.-++..|. .|.++.+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~v 46 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAY 46 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEE
Confidence 345666666 7899999999999998 8887754
No 129
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=53.52 E-value=11 Score=32.22 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=22.0
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
...+|+|+|. .||||++.+|+..| |..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l---g~~~ 44 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF---GFTY 44 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH---CCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---CCce
Confidence 4568999996 48999999998866 5544
No 130
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=53.37 E-value=17 Score=33.42 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=28.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCeeeec
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
...+|+|+|.+ ||||+...|...+...+.++.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 36799999965 799999999999888877775544
No 131
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=53.34 E-value=8.8 Score=30.69 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.8
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
+.|.|+|. .||||.+.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 46888884 79999999999877
No 132
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=53.30 E-value=7.8 Score=34.43 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQ 63 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~ 63 (377)
...+|+|||. .||||++.+|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999995 699999999984
No 133
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=53.28 E-value=9 Score=34.82 Aligned_cols=28 Identities=21% Similarity=0.579 Sum_probs=24.6
Q ss_pred CCcEEEE----eCCCChHhHHHHHHHHHHhCC
Q 017087 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLG 69 (377)
Q Consensus 42 ~~~~I~V----TGTnGKTTT~~~l~~iL~~~g 69 (377)
+.|||.| .|-.|||-++.+|...|+..+
T Consensus 35 ~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~ 66 (315)
T 4ehx_A 35 PVPVISVGNLSVGGSGKTSFVMYLADLLKDKR 66 (315)
T ss_dssp SSCEEEEEESBSSCCSHHHHHHHHHHHTTTSC
T ss_pred CCCEEEECCEEeCCCChHHHHHHHHHHHhhcC
Confidence 5789998 799999999999999997654
No 134
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=53.12 E-value=8.8 Score=31.76 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.0
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHH
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
....+|+|+| -.||||.+..|+.-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4567899999 468999999988654
No 135
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=53.11 E-value=7.7 Score=31.55 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.7
Q ss_pred cEEEEeC--CCChHhHHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
++|.|+| -.||||.+.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 4588999 479999999999877
No 136
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=52.99 E-value=12 Score=32.19 Aligned_cols=32 Identities=19% Similarity=0.423 Sum_probs=27.2
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHh-CCCCee
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNH-LGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~-~g~~~~ 73 (377)
....|.+.| -.||||.+..|...|.. .|.++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~ 54 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNV 54 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceee
Confidence 456899999 46899999999999998 887764
No 137
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=51.31 E-value=5.1 Score=33.51 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
+|+|.| -.||||.+..|...|...|.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 455555 3599999999999998776655
No 138
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=50.78 E-value=14 Score=29.71 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.2
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
...+|+++|. .||||++.+|...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4568999995 68999999998876
No 139
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=50.69 E-value=8 Score=30.99 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=19.2
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
.+|+|+|. .||||.+.+|+..|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899996 589999999988773
No 140
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=50.64 E-value=9.3 Score=31.82 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=19.7
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHH
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
...+|+|+| -.||||.+.+|...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 456999999 468999999988765
No 141
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=50.62 E-value=12 Score=30.35 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
++|+++|. .||||.+.+|+.-|
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999995 69999999998876
No 142
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=50.29 E-value=18 Score=30.58 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=23.9
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCC
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~ 70 (377)
...|.+.|. .||||.+..|...|...|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 357888884 4799999999999999997
No 143
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=49.46 E-value=7.2 Score=36.43 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=24.4
Q ss_pred CCCChHhHHHHHHHHHHhCCCCeeeecc
Q 017087 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (377)
Q Consensus 50 GTnGKTTT~~~l~~iL~~~g~~~~~~g~ 77 (377)
|-.||||++..++..|.+.|+++.+...
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 4568999999999999999999876665
No 144
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=49.24 E-value=13 Score=30.57 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=18.2
Q ss_pred EEEEeCC--CChHhHHHHHHHHHH
Q 017087 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 45 ~I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
.|+|+|. .||||.+..|+.-|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 5788884 689999999998874
No 145
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=49.18 E-value=15 Score=34.02 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=22.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhC
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~ 68 (377)
+..+|+|+|.| |||||...+...+...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 34599999976 5999999998888764
No 146
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=49.00 E-value=19 Score=31.02 Aligned_cols=29 Identities=34% Similarity=0.570 Sum_probs=25.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCC
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~ 71 (377)
...|.|.|- .||||.+..|...|...|.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 468888884 58999999999999999987
No 147
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=48.93 E-value=13 Score=30.74 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.1
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
..++|+|+|- .||||.+..|+..|
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999995 47999999998887
No 148
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=48.86 E-value=14 Score=30.09 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.2
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQM 64 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~i 64 (377)
..+.|++||. .||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999996 5799999999876
No 149
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=48.80 E-value=14 Score=30.49 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.0
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
+.+.|.++|. .||||++..|+..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4568888885 48999999999887
No 150
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=48.80 E-value=11 Score=31.38 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
.+.++|.|-| ||||+..+|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4578888866 89999999988774
No 151
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.92 E-value=12 Score=31.30 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||+..+|..++.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56799999977 89999999998874
No 152
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=47.75 E-value=14 Score=29.15 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCCee
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
.+|.|+|. .||||.+..| +..|..+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 47888884 5899999988 55676653
No 153
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=47.54 E-value=13 Score=30.41 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
..+|+|+|. .||||.+.+|+.-|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889984 69999999999877
No 154
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=47.29 E-value=14 Score=31.63 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=25.8
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCee
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
....|.|.|- .||||.+.+|...|.. |..+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 5568999995 6799999999999988 76653
No 155
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=47.25 E-value=13 Score=31.07 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=17.9
Q ss_pred CcEEEEeCC--CChHhHHHHHHH
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQ 63 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~ 63 (377)
..+|+|+|. .||||.+.+|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 358999995 599999999876
No 156
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=47.14 E-value=15 Score=30.12 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.6
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHH
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
...|.++| -.||||.+.+|+.-|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999 479999999998877
No 157
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=46.85 E-value=25 Score=30.06 Aligned_cols=34 Identities=21% Similarity=0.062 Sum_probs=23.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeee
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
+..++.+||. .||||...-+..-+...|.++.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4579999998 566666655555566678887543
No 158
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=46.83 E-value=39 Score=27.09 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=24.9
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH-hCCCCe
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLN-HLGIEA 72 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~-~~g~~~ 72 (377)
....+.+.|. .||||+...+...+. ..|..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~ 70 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG 70 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 3568999995 479999999999987 667654
No 159
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=46.67 E-value=17 Score=31.25 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=23.8
Q ss_pred EEEeCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 46 I~VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
++=.|-.||||++.-+++.|...|+++.+
T Consensus 11 ~~~kgGvGKTt~a~~la~~l~~~G~~V~v 39 (228)
T 2r8r_A 11 LGAAPGVGKTYAMLQAAHAQLRQGVRVMA 39 (228)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCCEEE
Confidence 34456789999999999999999998743
No 160
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=46.62 E-value=15 Score=29.86 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=18.4
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
..|+|+|. .||||.+..|+.-|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899995 68999999988766
No 161
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=46.42 E-value=23 Score=34.08 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=32.3
Q ss_pred HHHHhhC-CCCCcEEEEeCC------CChHhHHHHHHHHHHhCCCCee
Q 017087 33 DFAAQVI-PRSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 33 ~~~~~~~-~~~~~~I~VTGT------nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
+.+.++- +++.+.|.||+- -|||||+-=|.+.|...|+++.
T Consensus 32 ~~l~~~~~~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~ 79 (543)
T 3do6_A 32 RFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSI 79 (543)
T ss_dssp THHHHTTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHhhhhhcCCCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeE
Confidence 3444433 246789999997 6999999999999999999863
No 162
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=45.96 E-value=9.3 Score=30.88 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=16.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
+...|.++|. .||||.+.+|+.-|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999995 78999999988765
No 163
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=45.60 E-value=25 Score=31.08 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=25.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhC-CCCeee
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL-GIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~-g~~~~~ 74 (377)
...+++|+|-| ||||....|...+... |.++.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~ 69 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL 69 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 56789999965 8999999999888765 755543
No 164
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=45.44 E-value=26 Score=27.62 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=24.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCCe
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~ 72 (377)
...+++.|.+ ||||...++...+...|.++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~ 67 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNA 67 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcE
Confidence 4578899964 89999999999998766544
No 165
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=44.86 E-value=20 Score=33.25 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhC
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~ 68 (377)
+...+|+|+|.| ||||+...|...+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 355689999965 6999999999988764
No 166
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=44.86 E-value=14 Score=32.12 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=17.4
Q ss_pred cEEEEeC--CCChHhHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQM 64 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~i 64 (377)
.+|++|| -.||||++.++..-
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 5899999 57999999888654
No 167
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=44.74 E-value=18 Score=30.99 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=25.3
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhC----CCCee
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL----GIEAF 73 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~----g~~~~ 73 (377)
+...|.|.|. .||||.+..|..-|... |.++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~ 61 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVV 61 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeee
Confidence 4568999995 57999999999999987 87763
No 168
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=44.19 E-value=16 Score=29.75 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=19.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
..++|+|+|-+ ||||+..+|...+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34689999965 79999999887653
No 169
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=44.18 E-value=26 Score=28.78 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=19.9
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCeee
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
..++.+||. .||||...-+..-+...|.++.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~ 36 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAV 36 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 357889998 56777764444444456776643
No 170
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=44.05 E-value=18 Score=29.18 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=19.1
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHH
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
.+.|.++| -.||||++..|+.-|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46788888 579999999998877
No 171
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=44.01 E-value=19 Score=30.25 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=19.7
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
....|.++|. .||||.+.+|+.-|
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4567888884 68999999999877
No 172
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=43.63 E-value=27 Score=34.08 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=28.2
Q ss_pred CcEEEEeC----CCChHhHHHHHHHHHHhCCCCeee
Q 017087 43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 43 ~~~I~VTG----TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
.+-|-||| +=||+-|++-|..+|++.|+++.+
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~ 38 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTA 38 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 46788998 569999999999999999999854
No 173
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=43.39 E-value=17 Score=31.56 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
....+|+|+|-+ ||||+..+|+.-|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 355799999965 7999999998766
No 174
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=42.95 E-value=17 Score=29.43 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=18.8
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
...|+++|. .||||.+.+|+.-|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 347888884 58999999998776
No 175
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=42.76 E-value=17 Score=31.03 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=23.0
Q ss_pred hhCCCCCcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 37 QVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 37 ~~~~~~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
++++.+..+|+|+| -.||||++..|+.-| |+.+
T Consensus 8 ~~m~~~~~iI~i~g~~gsGk~~i~~~la~~l---g~~~ 42 (223)
T 3hdt_A 8 RFMGNKNLIITIEREYGSGGRIVGKKLAEEL---GIHF 42 (223)
T ss_dssp ----CCCEEEEEEECTTSCHHHHHHHHHHHH---TCEE
T ss_pred cccCCCCeEEEEeCCCCCCHHHHHHHHHHHc---CCcE
Confidence 34433456999999 568999999999887 5544
No 176
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=42.72 E-value=19 Score=37.42 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=28.6
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhC-----CCCeee
Q 017087 42 SIKILAVTGT---NGKSTVVTFVGQMLNHL-----GIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTGT---nGKTTT~~~l~~iL~~~-----g~~~~~ 74 (377)
..+.|-|+|| .|||+++.-|..+|++. |+++..
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~ 73 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLY 73 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEE
Confidence 4678999998 69999999999999999 888754
No 177
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=41.78 E-value=24 Score=29.05 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=19.3
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
...|.|+|. .||||.+..|+.-|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999995 68999999999877
No 178
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=41.72 E-value=16 Score=29.31 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=18.1
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
+.|.|+|. .||||.+..|+.-|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45788884 68999999998876
No 179
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=39.70 E-value=38 Score=33.85 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=27.1
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
+..+|.++| -.||||.+..|+..|.+.|..+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v 84 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 84 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 456899999 48999999999999988887653
No 180
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=39.28 E-value=21 Score=28.87 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.0
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHH
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
...|.++| -.||||.+..|+.-|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45788888 479999999998876
No 181
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=38.98 E-value=18 Score=28.93 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=18.9
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
.+|.++|. .||||++..|+.-|.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57888884 799999999988763
No 182
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=38.94 E-value=16 Score=33.01 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCCee
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~~~~ 73 (377)
++++++|||-+ ||||....|.... .|.+++
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~a 34 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIA 34 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEE
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEE
Confidence 57899999966 5888877766543 354543
No 183
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=38.16 E-value=46 Score=28.22 Aligned_cols=34 Identities=12% Similarity=-0.012 Sum_probs=22.1
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHH--HhCCCCeeee
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQML--NHLGIEAFVG 75 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL--~~~g~~~~~~ 75 (377)
+..+..+||+-||+-|+.+|..+. ..+|.++.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 456889999955555555555554 4567777543
No 184
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=38.05 E-value=22 Score=28.46 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
++..++++.|-| ||||...+|..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356799999976 6999999999888
No 185
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=37.98 E-value=32 Score=33.73 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=25.3
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCe
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~ 72 (377)
..+|.+||. .||||.+..|+.-|...|..+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~ 403 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKV 403 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 468999885 679999999999998888665
No 186
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=37.25 E-value=24 Score=28.30 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=19.3
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
..+.|.|+|. .||||.+..|+.-|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3457888884 68999999998776
No 187
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=37.18 E-value=19 Score=35.85 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=20.4
Q ss_pred CCcEEEEeCCCChHhH-HHHHHHHHHhCCC
Q 017087 42 SIKILAVTGTNGKSTV-VTFVGQMLNHLGI 70 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT-~~~l~~iL~~~g~ 70 (377)
..-++|-.|| |||+| ++-+.+++...|.
T Consensus 24 ~~lV~a~aGs-GKT~~l~~ri~~l~~~~~~ 52 (647)
T 3lfu_A 24 NLLVLAGAGS-GKTRVLVHRIAWLMSVENC 52 (647)
T ss_dssp CEEEEECTTS-CHHHHHHHHHHHHHHTSCC
T ss_pred CEEEEECCCC-CHHHHHHHHHHHHHHhCCC
Confidence 4457777777 99998 5567778876554
No 188
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=36.99 E-value=43 Score=32.52 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=34.6
Q ss_pred HHHHHHHcCCce---eeHHHH---HHhhCC---CCCcEEEEeCC--CChHhHHHHHHHHHHh
Q 017087 17 GLACLLQSGKRV---MSELDF---AAQVIP---RSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (377)
Q Consensus 17 ~~~~a~~~~~~~---l~~~~~---~~~~~~---~~~~~I~VTGT--nGKTTT~~~l~~iL~~ 67 (377)
.++..+..|.+. +++++. +.+.++ +...+|.+||- .||||++..|+.-|..
T Consensus 360 ~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 360 ELRRRLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp HHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 455555556544 555554 334342 24468999994 6999999999999975
No 189
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=36.46 E-value=21 Score=30.07 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.8
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHH
Q 017087 41 RSIKILAVTG--TNGKSTVVTFVGQMLN 66 (377)
Q Consensus 41 ~~~~~I~VTG--TnGKTTT~~~l~~iL~ 66 (377)
....+|+||| =.||+|++..+...+.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g 36 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLG 36 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcC
Confidence 3567999999 7899999999988663
No 190
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=36.38 E-value=19 Score=28.98 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.6
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 44 ~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
.+.+|+|-| ||||....|..+|.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 388999977 59999999998885
No 191
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=36.18 E-value=33 Score=33.92 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCC-CCe
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLG-IEA 72 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g-~~~ 72 (377)
...+|.+|| -.||||.+..|+..|...| ..+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~ 428 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV 428 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceE
Confidence 345899998 4679999999999998877 554
No 192
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=36.17 E-value=23 Score=33.75 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCC
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGI 70 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~ 70 (377)
.+.|+| -.||||+...+...|...|.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 566665 45999999999998988887
No 193
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=35.49 E-value=41 Score=31.72 Aligned_cols=28 Identities=43% Similarity=0.372 Sum_probs=21.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhC
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~ 68 (377)
+...+|+|+|-| |||||...+...+...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 355689999965 7999999988877543
No 194
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=35.44 E-value=27 Score=28.99 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.0
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 017087 45 ILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL 65 (377)
.|+|+| -.||||.+.+|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 477888 568999999997765
No 195
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=32.66 E-value=40 Score=28.17 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=22.6
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
+.|.|-| -.||||.+.+|..-|. .|.++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEE
Confidence 3566767 5799999999999996 476654
No 196
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=31.66 E-value=24 Score=29.68 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=19.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
+..+++|.|-| ||||+..+|...+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999955 7999999998877
No 197
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=30.99 E-value=31 Score=27.37 Aligned_cols=20 Identities=35% Similarity=0.300 Sum_probs=16.2
Q ss_pred cEEEEeC--CCChHhHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQ 63 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~ 63 (377)
.+|.|+| -.||||.+..|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3678888 4689999998876
No 198
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=30.79 E-value=32 Score=29.89 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
...|+++|. .||||+..+|+..|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899995 58999999999877
No 199
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=30.57 E-value=2.5e+02 Score=25.90 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcC
Q 017087 306 GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 343 (377)
Q Consensus 306 g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~ 343 (377)
|...++-.+.|++.|+ +++.++++++|.+.+.+.++
T Consensus 351 G~n~~~g~~~l~~~g~--~~~~~~~~~~aa~~~v~~~~ 386 (388)
T 2nu8_B 351 GNNAELGAKKLADSGL--NIIAAKGLTDAAQQVVAAVE 386 (388)
T ss_dssp STTHHHHHHHHHTTCS--SEEECSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHCCC--ceecCCCHHHHHHHHHHHhh
Confidence 4556666677766654 45566889999888877654
No 200
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=30.24 E-value=30 Score=27.91 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=18.0
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQM 64 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~i 64 (377)
+..+|+|.|- .||||+..+|...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4568899985 5899999988654
No 201
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=30.06 E-value=46 Score=30.06 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=36.4
Q ss_pred hhhhhcccCCCcHHHHHHHHcCCceeeHH----H---HHHhhCC---------------CCCcEEEEeCCC--ChHhHHH
Q 017087 4 LWLFLLEFQLKATGLACLLQSGKRVMSEL----D---FAAQVIP---------------RSIKILAVTGTN--GKSTVVT 59 (377)
Q Consensus 4 ~~~~~~~~~~~~p~~~~a~~~~~~~l~~~----~---~~~~~~~---------------~~~~~I~VTGTn--GKTTT~~ 59 (377)
.+|++-...+....+..|.+.++|++.-. + .+..++. -....+.++|.. ||||++.
T Consensus 83 ~IIltrg~~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 83 AIIVTRDLEPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETAL 162 (314)
T ss_dssp CEEECTTCCCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHH
Confidence 35666666666677788999999998622 1 1211110 024578899965 6877765
Q ss_pred HH
Q 017087 60 FV 61 (377)
Q Consensus 60 ~l 61 (377)
.+
T Consensus 163 ~l 164 (314)
T 1ko7_A 163 EL 164 (314)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 202
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=30.03 E-value=34 Score=29.00 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|-| ||||...+|...+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56799999977 69999999887764
No 203
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=29.90 E-value=41 Score=28.92 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=19.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
...+|+|+|. .||||++.+|+.-|
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999995 58999999998877
No 204
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=29.82 E-value=42 Score=28.59 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=19.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
+..+|+|.|-| ||||.+.+|+.-|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999966 7999999988766
No 205
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=29.81 E-value=41 Score=28.78 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=19.8
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
....|.|+|. .||||.+.+|..-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999995 68999999998766
No 206
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=29.69 E-value=28 Score=28.97 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=18.3
Q ss_pred cEEEEeC--CCChHhHHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
.+|+|+| -.||||.+.+|+..|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999 469999999988765
No 207
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=28.76 E-value=70 Score=26.81 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQ 63 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~ 63 (377)
+..+++|.|-| ||||+..++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 55799999976 79999998884
No 208
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=28.70 E-value=52 Score=27.15 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=21.9
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCCeee
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+.+.|+|+|. .||||+..-+..-+... .++++
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~ 62 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGA 62 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEE
Confidence 4578888884 79999987776665443 45543
No 209
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=28.37 E-value=32 Score=28.50 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=18.7
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
.|+|+| -.||||.+.+|+.-+ |..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---GIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEE
Confidence 377888 469999999987544 55443
No 210
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=28.05 E-value=25 Score=31.85 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccChH
Q 017087 328 VANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNFE 364 (377)
Q Consensus 328 ~~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~~~ 364 (377)
..|+.||++.+....++| |+|.|+||-.-++.+++..
T Consensus 239 paN~~EAlre~~~Di~EGAD~vMVKPal~YLDIi~~vk 276 (342)
T 1h7n_A 239 PAGRGLARRALERDMSEGADGIIVKPSTFYLDIMRDAS 276 (342)
T ss_dssp TTCHHHHHHHHHHHHHTTCSEEEEESSGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHhhHHhCCCeEEEecCccHHHHHHHHH
Confidence 357889999887766666 8999999987777665543
No 211
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=28.05 E-value=30 Score=29.47 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=19.0
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~ 66 (377)
..|.|.| ..||||.+..|+.-|.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4678888 5699999999998875
No 212
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=27.84 E-value=52 Score=29.53 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=22.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCC
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~~~g~ 70 (377)
.+..+++|.|-| ||||...+|..++ .|.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~ 153 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL--GGS 153 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH--TCE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc--Cce
Confidence 356799999965 6999999999998 553
No 213
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=27.79 E-value=40 Score=29.49 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+++|.|-| ||||...+|.-++
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 55799999988 7999998887654
No 214
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=27.18 E-value=53 Score=27.68 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=19.9
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
....|.++|. .||||.+.+|+.-|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457888884 799999999998873
No 215
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=27.03 E-value=33 Score=28.81 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.9
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHH
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
...|.|+| -.||||.+..|+.-|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35677777 469999999998755
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=26.93 E-value=77 Score=25.72 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.6
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCCee
Q 017087 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~ 73 (377)
..+.++|. .|||+.+..++.-+...|.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~ 86 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSL 86 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 67888885 5899999999999887777653
No 217
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=26.35 E-value=64 Score=27.29 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=30.3
Q ss_pred HHHHcCCceeeHHHHHHhhCCC--CCcEEEEeCC--CChHhHHHHHHHHHH
Q 017087 20 CLLQSGKRVMSELDFAAQVIPR--SIKILAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 20 ~a~~~~~~~l~~~~~~~~~~~~--~~~~I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
..+-+|+.+......+..+... +...+.+.|. .||||++.-|+..|.
T Consensus 33 ~l~yq~~~~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 33 FLRYQQIEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHcCcCHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344466665555555444311 2347899995 799999988888874
No 218
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=26.28 E-value=45 Score=28.64 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=20.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 41 ~~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
.. .+++|.|-| ||||...+|.-++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35 799999987 79999998876653
No 219
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=26.02 E-value=45 Score=27.94 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||...+|.-+ .
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~ 46 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-A 46 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-C
Confidence 45689999987 699999999887 5
No 220
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=26.01 E-value=41 Score=31.06 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=21.5
Q ss_pred cEEEEeCCCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
-++|-|| .||||+..++...+...|.++.+
T Consensus 39 ~i~G~~G-~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 39 TILAKPG-AGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp EEECCTT-SSHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEcCCC-CCHHHHHHHHHHHHHHCCCEEEE
Confidence 3455555 58999998888777777776644
No 221
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=25.90 E-value=68 Score=31.41 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=26.3
Q ss_pred cEEEEe-C---CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVT-G---TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VT-G---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+.|-|| | +-||+.+++-|..+|+..|+++..
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~ 38 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTI 38 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeee
Confidence 456777 4 579999999999999999999854
No 222
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=25.74 E-value=25 Score=31.76 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccChH
Q 017087 329 ANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNFE 364 (377)
Q Consensus 329 ~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~~~ 364 (377)
.|+.||++.+....++| |+|.|+||-.-++.+++..
T Consensus 229 aN~~EAlre~~~Di~EGAD~vMVKPal~YLDIi~~vk 265 (330)
T 1pv8_A 229 GARGLALRAVDRDVREGADMLMVKPGMPYLDIVREVK 265 (330)
T ss_dssp TCHHHHHHHHHHHHHTTCSBEEEESCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHhhHHhCCceEEEecCccHHHHHHHHH
Confidence 67899998887766666 8999999987777665543
No 223
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=25.74 E-value=46 Score=29.01 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|-| ||||...+|.-++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999988 79999888876553
No 224
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=25.49 E-value=49 Score=28.89 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=19.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~i 64 (377)
...+++|.|-| ||||...+|.-+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55799999987 799998888765
No 225
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=25.40 E-value=44 Score=26.92 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=16.5
Q ss_pred cEEEEeCCC--ChHhHHHHHHH
Q 017087 44 KILAVTGTN--GKSTVVTFVGQ 63 (377)
Q Consensus 44 ~~I~VTGTn--GKTTT~~~l~~ 63 (377)
.+|+++|.| ||||+..+|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 478899965 89999999975
No 226
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=25.39 E-value=67 Score=31.47 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=26.8
Q ss_pred cEEEEe-C---CCChHhHHHHHHHHHHhCCCCeee
Q 017087 44 KILAVT-G---TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 44 ~~I~VT-G---TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
+.|-|| | +-||+.+++-|..+|++.|+++..
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~ 47 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTA 47 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeE
Confidence 567777 5 569999999999999999999854
No 227
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=25.17 E-value=40 Score=30.88 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=19.3
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~ 66 (377)
++|+|+| ..||||.+..|+.-|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999 4699999999988764
No 228
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.86 E-value=48 Score=28.95 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=19.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+++|.|-| ||||...+|.-++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55799999988 7999988876554
No 229
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=24.85 E-value=47 Score=27.69 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=17.9
Q ss_pred cEEEEeC--CCChHhHHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL 65 (377)
..|.++| -.||||.+.+|+.-|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577777 479999999999877
No 230
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=24.82 E-value=42 Score=27.87 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=22.2
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCCe
Q 017087 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 43 ~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~ 72 (377)
.++|.|+| -.||||+...|+.-| |+.+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l---g~~~ 34 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY---NIPL 34 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT---TCCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh---CcCE
Confidence 36899998 679999999999877 5554
No 231
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=24.61 E-value=2.8e+02 Score=25.70 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcC
Q 017087 306 GYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMAT 343 (377)
Q Consensus 306 g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~ 343 (377)
|...++-.+.|++.|+ +++.++++++|.+.+.+.++
T Consensus 358 G~n~~~g~~~L~~~gl--~~~~~~~~~~Aa~~~v~~~~ 393 (395)
T 2fp4_B 358 GTNVHEAQNILTNSGL--PITSAVDLEDAAKKAVASVT 393 (395)
T ss_dssp ETTHHHHHHHHHHTCS--CCEECSSHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHCCC--ceEeCCCHHHHHHHHHHHhh
Confidence 4455556666666654 45566888999888877654
No 232
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=24.54 E-value=52 Score=32.35 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.6
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCCeeee
Q 017087 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (377)
Q Consensus 44 ~~I~VT---GTnGKTTT~~~l~~iL~~~g~~~~~~ 75 (377)
++|.|+ |-.||||++.-++..|...|.++.+.
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllv 361 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT 361 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEE
Confidence 445554 46799999999999999999988654
No 233
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=24.22 E-value=54 Score=27.46 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=16.9
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 017087 45 ILAVTG--TNGKSTVVTFVGQML 65 (377)
Q Consensus 45 ~I~VTG--TnGKTTT~~~l~~iL 65 (377)
.|.|+| -.||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 466777 369999999999877
No 234
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=24.15 E-value=43 Score=28.35 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=19.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+++|.|-| ||||...+|.-++
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999988 7999988876554
No 235
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=24.09 E-value=65 Score=29.81 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEc-CCCccc
Q 017087 329 ANMKDAVNHARRMATNGDAIVLS-PGCASF 357 (377)
Q Consensus 329 ~~~~~ai~~a~~~~~~gdivli~-~g~~s~ 357 (377)
.+..++++++.+.+++||+++|- .|+|.-
T Consensus 152 ~nI~~aL~~L~~~a~pgD~l~fyFSGHG~q 181 (367)
T 4af8_A 152 DNIVRYMAWLVKDAKPGDVLFFHYSGHGTQ 181 (367)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEEESCEEE
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEcCCcCc
Confidence 34567788888889999998874 788863
No 236
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=23.95 E-value=52 Score=28.58 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=19.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+++|.|-| ||||...+|.-++
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 55799999987 7999988886554
No 237
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=23.83 E-value=49 Score=27.58 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=16.8
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHH
Q 017087 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (377)
Q Consensus 44 ~~I~VTG--TnGKTTT~~~l~~iL~ 66 (377)
..|.|.| -.||||.+..|+.-|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455555 2499999999998774
No 238
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=23.70 E-value=55 Score=31.51 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.0
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhC
Q 017087 44 KILAVTGTN--GKSTVVTFVGQMLNHL 68 (377)
Q Consensus 44 ~~I~VTGTn--GKTTT~~~l~~iL~~~ 68 (377)
.+++|.|-| ||||+..+|.-++...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 799999987 8999999999988644
No 239
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=23.65 E-value=26 Score=31.62 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccChH
Q 017087 329 ANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNFE 364 (377)
Q Consensus 329 ~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~~~ 364 (377)
.|..||++.+....++| |+|.|+||-.-++.+++..
T Consensus 237 aN~~EAlrE~~~Di~EGAD~vMVKPal~YLDIir~vk 273 (337)
T 1w5q_A 237 ANSDEALHEVAADLAEGADMVMVKPGMPYLDIVRRVK 273 (337)
T ss_dssp TCSHHHHHHHHHHHHTTCSEEEEESCGGGHHHHHHHH
T ss_pred CChHHHHHHHHhhHHhCCCEEEEcCCCchHHHHHHHH
Confidence 57788888887766666 8999999988777666543
No 240
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=23.59 E-value=57 Score=28.11 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=17.2
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 017087 44 KILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 44 ~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
++|.|+|. .||||.+..|+.-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 46777773 58999999988765
No 241
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=23.44 E-value=66 Score=28.39 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=33.6
Q ss_pred ChHHHHHHHHhCCCCCcccc-----cCCHHHHHHHHHHhcCCCCEEEEc-CCCccc
Q 017087 308 SGVLIWKTLVNNGLSIPCFA-----VANMKDAVNHARRMATNGDAIVLS-PGCASF 357 (377)
Q Consensus 308 ~~~~i~~~l~~~g~~~~~~~-----~~~~~~ai~~a~~~~~~gdivli~-~g~~s~ 357 (377)
+++.+.+.|+..|++..... ..+..++++++.+.+++||+++|- .|+|..
T Consensus 32 Da~~~~~~L~~~Gf~v~~l~~~~~t~~~i~~al~~l~~~~~~~D~~~~yfSGHG~~ 87 (285)
T 3bij_A 32 DAEDMAAIAAERGFAVTTLMTKAATRAKVIDAIGKAAKALGKGDIFMLSYSGHGGQ 87 (285)
T ss_dssp HHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHHHHHHCCTTCEEEEEEESCEEE
T ss_pred HHHHHHHHHHHcCCceEEecCCccCHHHHHHHHHHHHHhCCCCCEEEEEEcCCccc
Confidence 55677777877776411111 123567788888889999988874 788854
No 242
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=23.34 E-value=54 Score=28.27 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=18.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~i 64 (377)
...+++|.|-| ||||...+|.-+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45799999988 799998888754
No 243
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=23.00 E-value=26 Score=31.45 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccC
Q 017087 329 ANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRN 362 (377)
Q Consensus 329 ~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~ 362 (377)
.|..||++.+....++| |+|.|+||-.-++.+++
T Consensus 223 aN~~EAlre~~~Di~EGAD~vMVKPal~YLDIi~~ 257 (323)
T 1l6s_A 223 MNRREAIRESLLDEAQGADCLMVKPAGAYLDIVRE 257 (323)
T ss_dssp TCHHHHHHHHHHHHHTTCSBEEEESCTTCHHHHHH
T ss_pred CCHHHHHHHHHhhHHhCCceEEEecCcchhHHHHH
Confidence 58899999887766666 89999999877776554
No 244
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=22.94 E-value=24 Score=30.26 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=40.3
Q ss_pred hhhhhhcccCCCcHHHHHHHHcCCcee--eHHHHHHhhCC----CCCcEEEEeCCCChH-hHHHHHHHHHHhC
Q 017087 3 MLWLFLLEFQLKATGLACLLQSGKRVM--SELDFAAQVIP----RSIKILAVTGTNGKS-TVVTFVGQMLNHL 68 (377)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l--~~~~~~~~~~~----~~~~~I~VTGTnGKT-TT~~~l~~iL~~~ 68 (377)
+|||..+..++.|+.+..+.++|+++- ..++...-.++ ++.-+|+|+ |+||+ ..+..|..-|++.
T Consensus 93 dLVIaAT~d~~~N~~I~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIS-T~G~sP~la~~iR~~ie~~ 164 (223)
T 3dfz_A 93 FFIVVATNDQAVNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAIS-TDGASPLLTKRIKEDLSSN 164 (223)
T ss_dssp SEEEECCCCTHHHHHHHHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEE-CCCCCcHHHHHHHHHHHHH
Confidence 466666667777777777656888873 34443322222 344589995 89997 5677777777654
No 245
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=22.64 E-value=54 Score=27.13 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=18.6
Q ss_pred EEEeC--CCChHhHHHHHHHHHHhCCCCee
Q 017087 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (377)
Q Consensus 46 I~VTG--TnGKTTT~~~l~~iL~~~g~~~~ 73 (377)
|.|+| -.||||.+.+|+.-| |..+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---g~~~i 29 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY---GIPQI 29 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---CCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 56666 369999999998876 55543
No 246
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=22.57 E-value=1.8e+02 Score=25.80 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=26.1
Q ss_pred cCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCC
Q 017087 266 IQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302 (377)
Q Consensus 266 ~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~ 302 (377)
.++..++.|+ ..++..+..+++.++.+..++++|..
T Consensus 227 ~~g~d~v~d~-~G~~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 227 LRFNQLILET-AGVPQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp GCSSEEEEEC-SCSHHHHHHHHHHCCTTCEEEECCCC
T ss_pred cCCccccccc-ccccchhhhhhheecCCeEEEEEecc
Confidence 3456677776 66789999999988766566777754
No 247
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=22.53 E-value=49 Score=28.93 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.0
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
..+++|.|.| ||||...+|.-++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999988 7999998887554
No 248
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=22.47 E-value=56 Score=28.60 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|-| ||||...+|.-++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55799999987 69999888876553
No 249
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.25 E-value=55 Score=27.99 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=19.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+++|.|-| ||||...+|.-++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999988 7999888876554
No 250
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=22.11 E-value=49 Score=28.69 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|-| ||||...+|.-++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45699999988 79999998876553
No 251
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=22.01 E-value=1.4e+02 Score=29.37 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=27.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCCeeeec
Q 017087 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (377)
Q Consensus 43 ~~~I~VTGT--nGKTTT~~~l~~iL~~~g~~~~~~g 76 (377)
.+++.|+|- .|||||...+...|...|.++.+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 467778884 4899999999999999998876543
No 252
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=21.99 E-value=46 Score=27.40 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=18.4
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL 65 (377)
..++|.|+|- .||||.+..|...+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4457777773 58999999988766
No 253
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=21.97 E-value=57 Score=28.25 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=19.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+++|.|-| ||||...+|.-++
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999988 7999888876554
No 254
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=21.82 E-value=57 Score=27.92 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...+++|.|-| ||||...+|.-++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55799999987 69999988876654
No 255
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=21.82 E-value=85 Score=27.87 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=26.6
Q ss_pred HHcCCceeeH-------HHHHHhhCCCCCcEEEEeCCCC--hHhHHHHHHHHH
Q 017087 22 LQSGKRVMSE-------LDFAAQVIPRSIKILAVTGTNG--KSTVVTFVGQML 65 (377)
Q Consensus 22 ~~~~~~~l~~-------~~~~~~~~~~~~~~I~VTGTnG--KTTT~~~l~~iL 65 (377)
.+.|.+++.- .+.+.... ...++++.|.|| |||+..+|. .+
T Consensus 139 ~~~g~~~~~~SA~~g~gi~~L~~~l--~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 139 RDAGYDVLKVSAKTGEGIDELVDYL--EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHTTCEEEECCTTTCTTHHHHHHHT--TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHCCCeEEEEECCCCCCHHHHHhhc--cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3456666532 23444444 346889999887 999988887 44
No 256
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=21.40 E-value=62 Score=27.61 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=18.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
+..+++|.|-| ||||...+|.-++
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55799999977 7999888876443
No 257
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=21.37 E-value=47 Score=28.51 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=19.8
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGT--nGKTTT~~~l~~iL~ 66 (377)
...+|.++|- .||||++..|...|.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3468899994 589999999987763
No 258
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=21.14 E-value=63 Score=28.07 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+++|.|-| ||||...+|.-++
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 55799999987 7999998887655
No 259
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=20.93 E-value=1.5e+02 Score=24.58 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=20.6
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhC--CCCeeeec
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQMLNHL--GIEAFVGG 76 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~iL~~~--g~~~~~~g 76 (377)
+..++..|| +||+-|+.-+...++++ |++|.+..
T Consensus 28 ~g~i~v~tG-~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTG-NGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEES-SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 334555555 55666666666666655 77776553
No 260
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=20.93 E-value=35 Score=30.71 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=28.1
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCCeee
Q 017087 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTG--TnGKTTT~~~l~~iL~~~g~~~~~ 74 (377)
...+|.+-| +.||||+...|..-|...|.++..
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~ 119 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVA 119 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEE
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEE
Confidence 345788888 899999999999999999988744
No 261
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=20.91 E-value=51 Score=30.17 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=19.4
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
...++|.|.| ||||...+|..++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999965 69999999988764
No 262
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=20.88 E-value=31 Score=26.10 Aligned_cols=31 Identities=16% Similarity=0.007 Sum_probs=23.4
Q ss_pred chhhhhhcccCCCcHHHHHHHHcCCceeeHH
Q 017087 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSEL 32 (377)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~ 32 (377)
+.++|.+..+.....-+.+|++.|+|++++-
T Consensus 48 T~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~ 78 (113)
T 2cok_A 48 SLCISTKKEVEKMNKKMEEVKEANIRVVSED 78 (113)
T ss_dssp SEEECCHHHHHHCCHHHHHHHHTTCCEECTH
T ss_pred ccEEEECCCCCCCChHHHHHHHCCCcEEeHH
Confidence 3567777554444567899999999999887
No 263
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=20.80 E-value=33 Score=31.22 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccCh
Q 017087 329 ANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNF 363 (377)
Q Consensus 329 ~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~~ 363 (377)
.|..||++.+....++| |+|.|+||-.-++.+++.
T Consensus 244 aN~~EAlrE~~lDi~EGAD~vMVKPal~YLDIi~~v 279 (356)
T 3obk_A 244 SNSREAEREAEADASEGADMLMVKPGLPYLDVLAKI 279 (356)
T ss_dssp TCSHHHHHHHHHHHHTTCSEEEEESSGGGHHHHHHH
T ss_pred CCHHHHHHHHHhhHhcCCCEEEecCCCcHHHHHHHH
Confidence 57788888887766666 899999998877766553
No 264
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=20.69 E-value=62 Score=28.49 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=19.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL~ 66 (377)
+..+++|.|-| ||||...+|.-++.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45689999988 69999888876553
No 265
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=20.58 E-value=2.3e+02 Score=24.62 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=34.8
Q ss_pred CCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCe
Q 017087 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (377)
Q Consensus 25 ~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~ 72 (377)
.+|++.-.+-..+.. ...+.|||-||.| |..+.+....+++.|..+
T Consensus 94 ~iPvigiiep~~~~~-~~~~~IGVLaT~~-Ti~s~~y~~~l~~~~~~~ 139 (268)
T 3out_A 94 AIPVIDVITAGVSLV-DNLNTVGVIATPA-TINSNAYALQIHKKNPNI 139 (268)
T ss_dssp TSCEEEHHHHHHHTT-TTCSEEEEEECHH-HHHHTHHHHHHHHHCTTS
T ss_pred CCCEEeccHHHHHHh-ccCCeEEEEecCc-ccccHHHHHHHHHhCCCC
Confidence 699999666555443 4668999999998 666678888898887654
No 266
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=20.52 E-value=78 Score=25.79 Aligned_cols=46 Identities=28% Similarity=0.241 Sum_probs=27.0
Q ss_pred ChHHHHHHHHhCCCCC-cccccCCHHHHHHHHHHh-cCC--CCEEEEcCC
Q 017087 308 SGVLIWKTLVNNGLSI-PCFAVANMKDAVNHARRM-ATN--GDAIVLSPG 353 (377)
Q Consensus 308 ~~~~i~~~l~~~g~~~-~~~~~~~~~~ai~~a~~~-~~~--gdivli~~g 353 (377)
+...+.+.+++.|... ....++|-.++++.++.. +.. -|+|+.+.|
T Consensus 41 n~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 41 SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4456778888877532 123455555555555543 444 598888633
No 267
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=20.47 E-value=1.2e+02 Score=25.73 Aligned_cols=33 Identities=15% Similarity=-0.003 Sum_probs=20.2
Q ss_pred CCcEEEEeCCCChHhHHHHHHHH--HHhCCCCeee
Q 017087 42 SIKILAVTGTNGKSTVVTFVGQM--LNHLGIEAFV 74 (377)
Q Consensus 42 ~~~~I~VTGTnGKTTT~~~l~~i--L~~~g~~~~~ 74 (377)
...+..|||+.|++-|+.++..+ +..+|.++.+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli 61 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVV 61 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEE
Confidence 45789999985544445555444 3445777643
No 268
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=20.41 E-value=26 Score=31.52 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHhcCCC-CEEEEcCCCcccccccChH
Q 017087 329 ANMKDAVNHARRMATNG-DAIVLSPGCASFDEFRNFE 364 (377)
Q Consensus 329 ~~~~~ai~~a~~~~~~g-divli~~g~~s~~~~~~~~ 364 (377)
.|..||++.+....++| |+|.|+||-.-++.+++..
T Consensus 230 aN~~EAlrE~~~Di~EGAD~vMVKPal~YLDIir~vk 266 (328)
T 1w1z_A 230 ANTEEAMKEVELDIVEGADIVMVKPGLAYLDIVWRTK 266 (328)
T ss_dssp TCSHHHHHHHHHHHHHTCSEEEEESCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHhhHHhCCCEEEEcCCCchHHHHHHHH
Confidence 57788888887666655 8999999988777666543
No 269
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=20.33 E-value=76 Score=26.22 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=20.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHh
Q 017087 43 IKILAVTGTN--GKSTVVTFVGQMLNH 67 (377)
Q Consensus 43 ~~~I~VTGTn--GKTTT~~~l~~iL~~ 67 (377)
..+..|+|-| ||||....|..+|-.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3578899976 899999999998864
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=20.30 E-value=54 Score=27.59 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=18.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 017087 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (377)
Q Consensus 42 ~~~~I~VTGTn--GKTTT~~~l~~iL 65 (377)
...+++|.|-| ||||...+|.-++
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999977 7999888876554
Done!