Query 017089
Match_columns 377
No_of_seqs 148 out of 1492
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 1.8E-84 3.9E-89 614.9 33.0 371 7-377 5-375 (375)
2 PTZ00281 actin; Provisional 100.0 3.4E-84 7.4E-89 614.8 33.7 376 2-377 1-376 (376)
3 PTZ00466 actin-like protein; P 100.0 2.4E-83 5.3E-88 607.7 34.4 370 6-377 11-380 (380)
4 KOG0676 Actin and related prot 100.0 1.5E-83 3.3E-88 588.5 23.7 369 4-377 4-372 (372)
5 PTZ00004 actin-2; Provisional 100.0 9.9E-82 2.1E-86 598.8 33.5 376 2-377 1-378 (378)
6 PTZ00280 Actin-related protein 100.0 1.4E-75 3E-80 563.6 33.9 370 7-376 4-409 (414)
7 PF00022 Actin: Actin; InterP 100.0 3.6E-76 7.8E-81 567.0 27.1 368 4-377 1-393 (393)
8 smart00268 ACTIN Actin. ACTIN 100.0 1.1E-74 2.5E-79 552.3 33.0 369 8-377 2-373 (373)
9 KOG0679 Actin-related protein 100.0 3.1E-75 6.7E-80 518.4 25.0 369 3-376 7-425 (426)
10 cd00012 ACTIN Actin; An ubiqui 100.0 4.7E-72 1E-76 533.7 32.1 367 9-375 1-371 (371)
11 KOG0677 Actin-related protein 100.0 1.5E-72 3.2E-77 476.9 19.6 371 5-375 2-386 (389)
12 COG5277 Actin and related prot 100.0 1.5E-68 3.3E-73 507.7 27.8 374 4-377 3-444 (444)
13 KOG0680 Actin-related protein 100.0 4.6E-66 9.9E-71 449.2 24.7 362 6-377 2-399 (400)
14 KOG0681 Actin-related protein 100.0 2.2E-53 4.7E-58 392.5 21.8 365 6-375 22-638 (645)
15 KOG0678 Actin-related protein 100.0 5.5E-52 1.2E-56 361.8 14.0 367 7-374 4-407 (415)
16 KOG0797 Actin-related protein 100.0 6.9E-40 1.5E-44 301.1 20.0 313 65-377 177-615 (618)
17 PRK13930 rod shape-determining 100.0 7.4E-38 1.6E-42 294.6 16.2 308 9-351 10-328 (335)
18 PRK13927 rod shape-determining 100.0 2.8E-36 6.1E-41 283.5 15.2 306 9-351 7-324 (334)
19 TIGR00904 mreB cell shape dete 100.0 1.6E-35 3.4E-40 278.0 15.9 311 10-351 5-327 (333)
20 PRK13929 rod-share determining 100.0 3.5E-35 7.7E-40 275.1 16.2 302 9-348 6-323 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 3.6E-33 7.9E-38 255.9 16.0 305 8-350 2-320 (326)
22 PRK13928 rod shape-determining 100.0 1.3E-31 2.7E-36 251.8 17.8 306 10-351 6-323 (336)
23 COG1077 MreB Actin-like ATPase 99.9 1E-26 2.3E-31 205.6 13.7 313 7-350 6-330 (342)
24 TIGR02529 EutJ ethanolamine ut 99.9 5.6E-22 1.2E-26 176.6 13.6 210 70-347 28-238 (239)
25 PRK15080 ethanolamine utilizat 99.8 1.8E-19 3.8E-24 163.3 17.6 243 5-349 22-267 (267)
26 TIGR01991 HscA Fe-S protein as 99.8 5.7E-20 1.2E-24 184.5 11.8 297 9-351 1-360 (599)
27 CHL00094 dnaK heat shock prote 99.8 1.1E-19 2.3E-24 183.6 13.4 297 8-351 3-376 (621)
28 PTZ00400 DnaK-type molecular c 99.8 2E-19 4.3E-24 182.3 13.5 216 102-351 174-415 (663)
29 PRK00290 dnaK molecular chaper 99.8 1.1E-19 2.4E-24 183.9 11.7 297 8-351 3-374 (627)
30 PLN03184 chloroplast Hsp70; Pr 99.8 2.4E-19 5.3E-24 181.7 13.6 299 8-351 40-413 (673)
31 PRK01433 hscA chaperone protei 99.8 4.9E-19 1.1E-23 176.7 15.2 226 81-351 119-356 (595)
32 TIGR02350 prok_dnaK chaperone 99.8 1.5E-19 3.1E-24 182.4 11.5 296 9-351 2-372 (595)
33 PRK13410 molecular chaperone D 99.8 5.4E-19 1.2E-23 178.7 13.2 297 8-351 3-376 (668)
34 PRK13411 molecular chaperone D 99.8 5.4E-19 1.2E-23 179.0 13.0 219 102-351 133-376 (653)
35 PRK05183 hscA chaperone protei 99.8 4.6E-19 9.9E-24 178.3 11.9 295 8-351 20-376 (616)
36 PTZ00186 heat shock 70 kDa pre 99.8 2.4E-18 5.1E-23 173.3 13.3 218 102-351 160-401 (657)
37 PTZ00009 heat shock 70 kDa pro 99.8 2.8E-18 6.1E-23 174.0 13.9 215 102-351 140-381 (653)
38 PRK11678 putative chaperone; P 99.7 2.4E-16 5.1E-21 152.3 12.1 180 9-192 2-260 (450)
39 COG0443 DnaK Molecular chapero 99.7 8.5E-16 1.8E-20 152.8 15.2 311 6-351 4-357 (579)
40 PF00012 HSP70: Hsp70 protein; 99.7 8.7E-17 1.9E-21 163.3 7.9 234 82-351 114-376 (602)
41 PRK09472 ftsA cell division pr 99.6 1.3E-14 2.7E-19 140.2 16.5 202 114-351 164-388 (420)
42 TIGR01174 ftsA cell division p 99.6 1.5E-14 3.3E-19 137.9 15.6 181 114-334 156-347 (371)
43 COG0849 ftsA Cell division ATP 99.6 3.8E-14 8.2E-19 133.9 14.1 201 114-351 163-380 (418)
44 KOG0100 Molecular chaperones G 99.4 8.3E-12 1.8E-16 113.7 16.2 215 102-351 172-411 (663)
45 KOG0101 Molecular chaperones H 99.4 7.7E-12 1.7E-16 121.9 15.2 216 103-351 144-383 (620)
46 TIGR01175 pilM type IV pilus a 99.3 1.7E-10 3.8E-15 109.2 17.0 155 114-320 141-307 (348)
47 PRK13917 plasmid segregation p 99.3 1.9E-10 4.1E-15 108.1 15.6 185 8-198 3-233 (344)
48 KOG0104 Molecular chaperones G 99.2 6.2E-11 1.4E-15 115.5 11.4 219 102-350 158-412 (902)
49 TIGR03739 PRTRC_D PRTRC system 99.2 3.6E-10 7.9E-15 105.5 14.2 183 12-198 2-215 (320)
50 PF11104 PilM_2: Type IV pilus 99.2 6.2E-10 1.3E-14 104.9 14.8 185 80-319 86-298 (340)
51 COG4820 EutJ Ethanolamine util 99.1 1.2E-11 2.7E-16 102.4 1.4 237 4-344 26-267 (277)
52 KOG0103 Molecular chaperones H 99.1 2E-09 4.3E-14 104.7 14.6 232 101-374 136-406 (727)
53 COG4972 PilM Tfp pilus assembl 98.9 3.7E-08 7.9E-13 88.4 13.6 118 152-320 195-312 (354)
54 KOG0102 Molecular chaperones m 98.7 5.9E-07 1.3E-11 85.4 16.3 211 103-349 161-399 (640)
55 PF06406 StbA: StbA protein; 98.4 6.9E-07 1.5E-11 83.3 8.3 70 128-197 137-212 (318)
56 PRK10719 eutA reactivating fac 98.3 3.1E-06 6.8E-11 80.6 8.9 163 1-190 1-184 (475)
57 TIGR00241 CoA_E_activ CoA-subs 98.3 2.3E-05 5E-10 70.5 14.1 43 298-348 206-248 (248)
58 TIGR03192 benz_CoA_bzdQ benzoy 98.1 1E-05 2.3E-10 73.1 7.2 48 295-350 239-287 (293)
59 COG1924 Activator of 2-hydroxy 98.0 6.2E-05 1.3E-09 69.3 11.7 45 299-351 346-390 (396)
60 TIGR03286 methan_mark_15 putat 98.0 1.3E-05 2.9E-10 75.3 6.4 47 296-350 356-402 (404)
61 TIGR02261 benz_CoA_red_D benzo 97.9 3.5E-05 7.5E-10 68.8 7.6 50 297-349 213-262 (262)
62 PF06277 EutA: Ethanolamine ut 97.6 0.00026 5.7E-09 67.7 8.3 174 7-202 3-204 (473)
63 TIGR02259 benz_CoA_red_A benzo 96.2 0.0039 8.4E-08 58.5 3.1 52 295-349 381-432 (432)
64 PRK11031 guanosine pentaphosph 95.9 0.02 4.4E-07 56.8 6.9 82 106-190 81-170 (496)
65 TIGR03706 exo_poly_only exopol 95.8 0.028 6E-07 52.1 6.9 83 106-191 75-164 (300)
66 PF01869 BcrAD_BadFG: BadF/Bad 95.7 0.0057 1.2E-07 55.7 2.2 48 299-349 224-271 (271)
67 PRK13317 pantothenate kinase; 95.6 0.09 2E-06 47.9 9.3 71 275-350 201-273 (277)
68 PF08841 DDR: Diol dehydratase 95.5 0.013 2.8E-07 52.2 3.4 94 114-217 93-191 (332)
69 PRK10854 exopolyphosphatase; P 94.7 0.045 9.8E-07 54.6 4.9 81 106-189 86-174 (513)
70 COG0248 GppA Exopolyphosphatas 94.2 0.041 8.8E-07 54.1 3.4 79 111-191 83-168 (492)
71 PF14450 FtsA: Cell division p 94.0 0.22 4.8E-06 39.2 6.7 58 153-221 2-70 (120)
72 PRK09557 fructokinase; Reviewe 93.7 2.2 4.8E-05 39.3 13.9 52 121-174 88-146 (301)
73 TIGR00744 ROK_glcA_fam ROK fam 93.6 2 4.3E-05 39.9 13.5 52 121-174 89-147 (318)
74 TIGR00555 panK_eukar pantothen 93.3 0.88 1.9E-05 41.4 10.0 68 275-347 209-278 (279)
75 COG4819 EutA Ethanolamine util 93.2 0.87 1.9E-05 41.8 9.7 161 4-187 2-180 (473)
76 PF01968 Hydantoinase_A: Hydan 91.5 0.13 2.8E-06 47.4 2.4 28 146-173 73-100 (290)
77 PF02541 Ppx-GppA: Ppx/GppA ph 89.9 0.49 1.1E-05 43.4 4.8 82 107-191 62-151 (285)
78 COG2441 Predicted butyrate kin 89.7 0.26 5.6E-06 44.0 2.6 156 150-351 163-332 (374)
79 TIGR03123 one_C_unchar_1 proba 87.8 0.38 8.2E-06 44.6 2.4 28 147-174 125-152 (318)
80 PRK13321 pantothenate kinase; 86.9 2 4.2E-05 38.8 6.5 19 9-27 2-20 (256)
81 PF03309 Pan_kinase: Type III 86.3 6.2 0.00014 34.2 9.2 18 10-27 2-19 (206)
82 PRK13324 pantothenate kinase; 85.9 8.6 0.00019 34.7 10.0 18 9-26 2-19 (258)
83 COG1521 Pantothenate kinase ty 85.3 10 0.00022 33.9 10.0 18 9-26 2-19 (251)
84 COG1548 Predicted transcriptio 84.6 0.67 1.5E-05 41.0 2.2 24 149-172 129-152 (330)
85 PF07318 DUF1464: Protein of u 84.5 2.5 5.5E-05 39.4 6.0 50 298-351 263-315 (343)
86 PRK13329 pantothenate kinase; 80.4 14 0.0003 33.2 9.0 17 9-25 3-19 (249)
87 TIGR00671 baf pantothenate kin 79.5 9.5 0.00021 34.1 7.7 18 10-27 2-19 (243)
88 PRK13320 pantothenate kinase; 77.9 20 0.00043 32.0 9.3 18 9-26 4-21 (244)
89 PRK13318 pantothenate kinase; 77.3 23 0.00049 31.9 9.6 18 9-26 2-19 (258)
90 PRK13326 pantothenate kinase; 75.1 20 0.00044 32.4 8.6 19 9-27 8-26 (262)
91 KOG2708 Predicted metalloprote 74.3 4 8.6E-05 35.6 3.6 54 146-200 120-173 (336)
92 PF08735 DUF1786: Putative pyr 73.1 21 0.00046 31.9 7.9 46 127-173 138-190 (254)
93 COG0145 HyuA N-methylhydantoin 70.7 2.7 5.8E-05 43.3 2.1 27 147-173 273-301 (674)
94 PRK13331 pantothenate kinase; 61.1 8.7 0.00019 34.5 3.2 27 1-27 1-27 (251)
95 PRK13322 pantothenate kinase; 58.8 1.3E+02 0.0028 26.9 10.3 18 9-26 2-19 (246)
96 PF03702 UPF0075: Uncharacteri 56.7 5 0.00011 38.1 0.9 26 296-321 285-310 (364)
97 smart00842 FtsA Cell division 56.4 31 0.00067 29.2 5.8 21 72-92 36-56 (187)
98 PRK05082 N-acetylmannosamine k 54.2 59 0.0013 29.6 7.7 49 124-174 91-145 (291)
99 smart00732 YqgFc Likely ribonu 44.2 24 0.00052 26.0 2.8 19 8-26 2-20 (99)
100 PRK13310 N-acetyl-D-glucosamin 44.2 1.3E+02 0.0028 27.6 8.3 53 121-175 88-147 (303)
101 KOG1794 N-Acetylglucosamine ki 43.4 2.6E+02 0.0057 25.7 9.4 91 82-173 47-143 (336)
102 PRK05082 N-acetylmannosamine k 42.9 32 0.00069 31.4 4.0 67 276-350 221-287 (291)
103 PF02782 FGGY_C: FGGY family o 42.8 29 0.00062 29.4 3.5 48 295-351 149-196 (198)
104 PRK09698 D-allose kinase; Prov 41.5 43 0.00092 30.7 4.6 52 121-174 96-153 (302)
105 PRK13310 N-acetyl-D-glucosamin 39.8 38 0.00083 31.1 4.0 67 276-349 233-300 (303)
106 smart00732 YqgFc Likely ribonu 39.6 84 0.0018 23.0 5.2 44 152-195 3-47 (99)
107 PF03727 Hexokinase_2: Hexokin 39.5 29 0.00062 31.0 3.0 50 299-351 189-240 (243)
108 PRK13311 N-acetyl-D-glucosamin 38.4 1.7E+02 0.0036 26.1 7.9 53 121-175 88-147 (256)
109 PRK09585 anmK anhydro-N-acetyl 36.6 21 0.00045 34.0 1.7 23 297-319 288-310 (365)
110 TIGR03367 queuosine_QueD queuo 36.4 35 0.00077 25.2 2.6 49 74-129 42-90 (92)
111 PTZ00340 O-sialoglycoprotein e 35.3 20 0.00042 33.8 1.3 50 296-350 264-319 (345)
112 PRK03011 butyrate kinase; Prov 32.3 31 0.00068 32.8 2.1 49 296-348 296-344 (358)
113 TIGR01319 glmL_fam conserved h 32.3 27 0.00059 34.1 1.7 24 150-173 249-272 (463)
114 COG4012 Uncharacterized protei 31.3 1.8E+02 0.004 26.2 6.5 39 135-173 208-250 (342)
115 cd08627 PI-PLCc_gamma1 Catalyt 31.0 83 0.0018 27.8 4.3 45 82-132 74-118 (229)
116 PLN02666 5-oxoprolinase 29.5 50 0.0011 37.0 3.4 21 150-171 314-334 (1275)
117 cd08626 PI-PLCc_beta4 Catalyti 29.1 88 0.0019 28.1 4.2 45 82-132 76-120 (257)
118 TIGR03192 benz_CoA_bzdQ benzoy 28.7 92 0.002 28.6 4.4 47 152-200 34-83 (293)
119 COG0533 QRI7 Metal-dependent p 28.5 33 0.00071 32.1 1.5 56 291-351 257-318 (342)
120 PF13941 MutL: MutL protein 28.1 36 0.00079 33.4 1.8 74 102-175 178-273 (457)
121 PRK15027 xylulokinase; Provisi 28.0 41 0.00089 33.3 2.3 48 296-351 387-434 (484)
122 cd08596 PI-PLCc_epsilon Cataly 28.0 93 0.002 27.9 4.2 44 82-131 74-117 (254)
123 cd08630 PI-PLCc_delta3 Catalyt 27.7 97 0.0021 27.9 4.3 45 82-132 74-118 (258)
124 cd08632 PI-PLCc_eta1 Catalytic 27.6 99 0.0021 27.7 4.3 45 82-132 74-118 (253)
125 cd08592 PI-PLCc_gamma Catalyti 26.9 1E+02 0.0022 27.2 4.2 45 82-132 74-118 (229)
126 cd08595 PI-PLCc_zeta Catalytic 26.6 1E+02 0.0022 27.8 4.2 45 82-132 74-118 (257)
127 cd08594 PI-PLCc_eta Catalytic 26.5 1.1E+02 0.0023 27.1 4.2 44 82-131 74-117 (227)
128 cd08631 PI-PLCc_delta4 Catalyt 26.2 1E+02 0.0022 27.8 4.1 44 82-131 74-117 (258)
129 cd08629 PI-PLCc_delta1 Catalyt 26.1 1E+02 0.0023 27.7 4.2 44 82-131 74-117 (258)
130 cd08593 PI-PLCc_delta Catalyti 25.7 1E+02 0.0023 27.7 4.1 44 82-131 74-117 (257)
131 cd08633 PI-PLCc_eta2 Catalytic 25.5 1.1E+02 0.0024 27.4 4.2 45 82-132 74-118 (254)
132 cd08598 PI-PLC1c_yeast Catalyt 25.3 1.1E+02 0.0024 27.1 4.1 44 82-131 74-117 (231)
133 PRK03011 butyrate kinase; Prov 25.2 85 0.0018 29.9 3.7 24 7-30 2-25 (358)
134 TIGR03286 methan_mark_15 putat 25.2 1.1E+02 0.0024 29.5 4.5 50 151-200 145-194 (404)
135 cd08591 PI-PLCc_beta Catalytic 25.1 1.1E+02 0.0024 27.5 4.2 45 82-132 76-120 (257)
136 PF00370 FGGY_N: FGGY family o 25.0 50 0.0011 29.2 2.1 19 9-27 2-20 (245)
137 PF00349 Hexokinase_1: Hexokin 24.4 1.6E+02 0.0035 25.5 5.0 34 134-168 46-81 (206)
138 TIGR01312 XylB D-xylulose kina 23.7 69 0.0015 31.6 3.0 47 296-351 391-437 (481)
139 PF13941 MutL: MutL protein 23.5 48 0.0011 32.5 1.7 23 9-31 2-26 (457)
140 cd08558 PI-PLCc_eukaryota Cata 22.7 1.4E+02 0.0029 26.4 4.2 45 82-132 74-118 (226)
141 cd08597 PI-PLCc_PRIP_metazoa C 22.6 1.3E+02 0.0028 27.2 4.1 45 82-132 74-118 (260)
142 PRK13321 pantothenate kinase; 22.4 2.3E+02 0.005 25.3 5.9 47 153-199 3-51 (256)
143 COG1149 MinD superfamily P-loo 21.5 1.2E+02 0.0026 27.5 3.7 38 102-140 187-224 (284)
144 PRK14878 UGMP family protein; 21.3 74 0.0016 29.7 2.5 35 296-335 242-276 (323)
145 cd08628 PI-PLCc_gamma2 Catalyt 21.1 1.5E+02 0.0033 26.6 4.2 45 82-132 74-118 (254)
146 TIGR00329 gcp_kae1 metallohydr 21.1 74 0.0016 29.4 2.4 35 296-335 259-293 (305)
147 KOG1386 Nucleoside phosphatase 20.8 8.4E+02 0.018 24.3 9.7 137 10-165 12-177 (501)
148 PF07520 SrfB: Virulence facto 20.6 1.8E+02 0.0038 31.6 5.2 56 114-170 214-269 (1002)
149 PRK00566 DNA-directed RNA poly 20.5 1.1E+02 0.0024 33.8 3.8 90 103-192 821-914 (1156)
150 PRK13333 pantothenate kinase; 20.2 94 0.002 27.0 2.7 21 150-171 84-104 (206)
151 TIGR03722 arch_KAE1 universal 20.1 89 0.0019 29.1 2.7 26 296-321 243-268 (322)
152 KOG2707 Predicted metalloprote 20.0 73 0.0016 29.9 2.1 72 276-351 288-362 (405)
153 PRK13317 pantothenate kinase; 20.0 88 0.0019 28.5 2.6 39 148-189 94-132 (277)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.8e-84 Score=614.94 Aligned_cols=371 Identities=56% Similarity=1.025 Sum_probs=347.5
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccCCHHHHHH
Q 017089 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEK 86 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~ 86 (377)
.++||||+||+++|+||+|++.|++++||++++++......+....++++|+++...++...+++|+++|.+.|||+++.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~ 84 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI 84 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence 46899999999999999999999999999999987653222223456789999988788889999999999999999999
Q ss_pred HHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCceEEEE
Q 017089 87 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166 (377)
Q Consensus 87 ~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~~ 166 (377)
+|+|+|.+.|.++++++|+++++|+++++..|+++++++||.+++|++++.+++++++|++|+++|+|||+|++.|+|+|
T Consensus 85 iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~P 164 (375)
T PTZ00452 85 IWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVP 164 (375)
T ss_pred HHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcCC
Q 017089 167 IYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD 246 (377)
Q Consensus 167 v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (377)
|+||+++.++..++++||++++++|.++|.++++.+....+.+.++++|+++|+++.|++++...........+.|.+||
T Consensus 165 V~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD 244 (375)
T PTZ00452 165 VFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD 244 (375)
T ss_pred EECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC
Confidence 99999999999999999999999999999988888877777889999999999999999887765544344567899999
Q ss_pred CcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCC
Q 017089 247 GQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS 326 (377)
Q Consensus 247 ~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~ 326 (377)
|+.+.++.+||.++|+||+|++.+.+..||+++|.++|.+||+|.|+.|++||||+||+|++|||.+||++||++++|..
T Consensus 245 g~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~ 324 (375)
T PTZ00452 245 GNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQ 324 (375)
T ss_pred CCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017089 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 327 ~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
.++++..++++.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 325 ~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 325 LKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred ceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 899999999999999999999999999999999999999999999999997
No 2
>PTZ00281 actin; Provisional
Probab=100.00 E-value=3.4e-84 Score=614.83 Aligned_cols=376 Identities=91% Similarity=1.411 Sum_probs=353.4
Q ss_pred CCCCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccCCH
Q 017089 2 ADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW 81 (377)
Q Consensus 2 ~~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~ 81 (377)
|.+|+.++||||+||+++|+||+||+.|++++||+++++++...+.+.++.+.++|+++...+....+++|+++|.+.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dw 80 (376)
T PTZ00281 1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80 (376)
T ss_pred CCCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCH
Confidence 56788899999999999999999999999999999999877655444445678899998877777889999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCc
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
++++.+|+|+|.+.|.++++++|+++++|+++++..|+++++++||.++++++++.+++++++|++|++||+|||+|++.
T Consensus 81 d~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (376)
T PTZ00281 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGV 160 (376)
T ss_pred HHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCce
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCcceE
Q 017089 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKS 241 (377)
Q Consensus 162 t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
|+|+||+||+++.++..++++||++++++|+++|.++++++....+.+.++++|+++|+|+.+++.+++.........+.
T Consensus 161 t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (376)
T PTZ00281 161 SHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKS 240 (376)
T ss_pred EEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence 99999999999999999999999999999999999888888777778899999999999999988777655444456778
Q ss_pred EEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHh
Q 017089 242 YELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA 321 (377)
Q Consensus 242 ~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~ 321 (377)
|.+|||+.+.++.+|+.++|+||+|++.+.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.
T Consensus 241 y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~ 320 (376)
T PTZ00281 241 YELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTA 320 (376)
T ss_pred EECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017089 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
++|...+++++.+++|++++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 321 ~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 321 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred hCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 99988899999999999999999999999999999999999999999999999997
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=2.4e-83 Score=607.70 Aligned_cols=370 Identities=52% Similarity=0.969 Sum_probs=346.4
Q ss_pred CCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccCCHHHHH
Q 017089 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~ 85 (377)
+.++||||+||+++|+||+|++.|++++||++++++....+.+....+.++|+++...++...+++|+++|.+.|||+++
T Consensus 11 ~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e 90 (380)
T PTZ00466 11 SNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDME 90 (380)
T ss_pred cCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHH
Confidence 45689999999999999999999999999999999876554444456789999988777778899999999999999999
Q ss_pred HHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCceEEE
Q 017089 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 165 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~ 165 (377)
.+|+|+| +.|++.++++|+++++++++++..|+++++++||.+++|++++.++++||+|++|.++|+|||+|++.|+|+
T Consensus 91 ~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~ 169 (380)
T PTZ00466 91 NIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCV 169 (380)
T ss_pred HHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEE
Confidence 9999998 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcC
Q 017089 166 PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP 245 (377)
Q Consensus 166 ~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p 245 (377)
||+||+++.++..++++||++++++|.++|.+++..+....+.+.++++|+++|+|+.|+.++..... .......|.+|
T Consensus 170 PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~-~~~~~~~y~LP 248 (380)
T PTZ00466 170 SIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYILP 248 (380)
T ss_pred EEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhcc-ccccceeEECC
Confidence 99999999999999999999999999999998888777777889999999999999999887765432 22345789999
Q ss_pred CCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCC
Q 017089 246 DGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS 325 (377)
Q Consensus 246 ~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~ 325 (377)
||..+.++.+||.++|+||+|++++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.+.|.
T Consensus 249 dg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~ 328 (380)
T PTZ00466 249 DGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPK 328 (380)
T ss_pred CCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017089 326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 326 ~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
..++++..+++|++++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 329 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 329 DITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 8899999999999999999999999999999999999999999999999997
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.5e-83 Score=588.52 Aligned_cols=369 Identities=81% Similarity=1.312 Sum_probs=351.3
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccCCHHH
Q 017089 4 TEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 83 (377)
..+.++||||+||..+|+||+||+.|+.++||.+++|++..++.++.+.+.++|+++...+ .+++|+++|.+.||++
T Consensus 4 ~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~ 80 (372)
T KOG0676|consen 4 ADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDD 80 (372)
T ss_pred cCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchHH
Confidence 4456999999999999999999999999999999999999998888889999999998877 6799999999999999
Q ss_pred HHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCceE
Q 017089 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 163 (377)
++.+|.|+|+..|.+.|+++|+++++|+++++..|+++++++||.|++|++++...+++ |++|+++|+|||+|++.|.
T Consensus 81 me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~ 158 (372)
T KOG0676|consen 81 MEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTH 158 (372)
T ss_pred HHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999554444 9999999999999999999
Q ss_pred EEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEE
Q 017089 164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 243 (377)
Q Consensus 164 i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
++||++|++++++...+++||++++++++..|.++++.+....+.++++++|+++||++.|+++++............|+
T Consensus 159 ~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~ 238 (372)
T KOG0676|consen 159 VVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYE 238 (372)
T ss_pred eeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccccccc
Confidence 99999999999999999999999999999999999999998889999999999999999999999887444555667799
Q ss_pred cCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhC
Q 017089 244 LPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA 323 (377)
Q Consensus 244 ~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~ 323 (377)
+|||+.+.++++||.++|+||+|+.++.+..+|++++.++|.+|++|.|+.|+.||||+||++.+|||.+||++|++.+.
T Consensus 239 lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~ 318 (372)
T KOG0676|consen 239 LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALA 318 (372)
T ss_pred CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017089 324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
|...+++|+.+|++.+++|+||||+|++..|++.||||+||+|+|+.+++||||
T Consensus 319 P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 319 PSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred CCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 999999999999999999999999999999999999999999999999999998
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=9.9e-82 Score=598.84 Aligned_cols=376 Identities=80% Similarity=1.295 Sum_probs=350.4
Q ss_pred CCCCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccCCH
Q 017089 2 ADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW 81 (377)
Q Consensus 2 ~~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~ 81 (377)
|+-++.++||||+||+++|+||+|++.|++++||+++++++...+.+..++..++|+++...++...+++|+++|.+.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~ 80 (378)
T PTZ00004 1 MSVEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNW 80 (378)
T ss_pred CCCCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCH
Confidence 46678889999999999999999999999999999999887655444445678899998777677889999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCc
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
++++.+|+|+|.+.|+..+.++|+++++|+++++..|+++++++||.++++++++.+++++|+|++|.+||+|||+|++.
T Consensus 81 d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (378)
T PTZ00004 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (378)
T ss_pred HHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCc
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCC-Ccce
Q 017089 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSS-AVEK 240 (377)
Q Consensus 162 t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~-~~~~ 240 (377)
|+|+||+||+++.++..++++||++++++|.++|.++++.+....+.+.++++|+++|+|+.|++++........ ....
T Consensus 161 t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (378)
T PTZ00004 161 SHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEE 240 (378)
T ss_pred EEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccce
Confidence 999999999999999999999999999999999999888877767788999999999999999988776443222 2467
Q ss_pred EEEcCCCcEEeeCCccccccccCCCCccCCCc-CCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHH
Q 017089 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 241 ~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL 319 (377)
.|.+|||..+.++.+|+.++|+||+|++++.+ ..+|+++|.++|.+||+|.|+.|++||||+||+|++|||.+||++||
T Consensus 241 ~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL 320 (378)
T PTZ00004 241 SYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKEL 320 (378)
T ss_pred EEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHH
Confidence 89999999999999999999999999998887 89999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017089 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 320 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
++++|...++++..+++|.+++|+|||++|++.+|++.||||+||+|+|++++.||||
T Consensus 321 ~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 321 TTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred HHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 9999988889999999999999999999999999999999999999999999999997
No 6
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.4e-75 Score=563.57 Aligned_cols=370 Identities=41% Similarity=0.750 Sum_probs=332.6
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCcc---ccCCCcceeeccchhcccCcceeeccccCCccCCHHH
Q 017089 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM---VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~---~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 83 (377)
.++||||+||+++|+||+|++.|++++||++++++..... .+....++++|+++........+++|+++|.+.|||+
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~ 83 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL 83 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence 5689999999999999999999999999999987653211 1112336789999988877889999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeeccccccccc----------CCceEE
Q 017089 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS----------GRTTGI 153 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~~~l 153 (377)
++.+|+|+|.+.|++++.++|+++++|++++...|+++++++||.++++++++.++++||+|++ |.++|+
T Consensus 84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl 163 (414)
T PTZ00280 84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT 163 (414)
T ss_pred HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence 9999999988889999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEeCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhc
Q 017089 154 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAK 233 (377)
Q Consensus 154 VVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~ 233 (377)
|||+|++.|+|+||++|.++.++..++++||++++++|.++|.+++..+....+.+.++++|+++|++..|+.++.....
T Consensus 164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~ 243 (414)
T PTZ00280 164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYD 243 (414)
T ss_pred EEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998888777666678999999999999999888776543
Q ss_pred cC-CCcceEEEcCCC---c--EEeeCCccccccccCCCCccCCCc-CCChHHHHHHHHhcCCHHHHHHhhcCcccccCCc
Q 017089 234 TS-SAVEKSYELPDG---Q--VITIGAERFRCPEVLFQPSMIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST 306 (377)
Q Consensus 234 ~~-~~~~~~~~~p~~---~--~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s 306 (377)
.. ......|.+||. . .+.++.+||.++|+||+|++++.. ..+|+++|.++|++||+|.|+.|++||+|+||+|
T Consensus 244 ~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s 323 (414)
T PTZ00280 244 SDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGST 323 (414)
T ss_pred cCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcc
Confidence 22 223456888873 3 789999999999999999887544 4599999999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHhhC----------------CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCc
Q 017089 307 MFPGIADRMSKEITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPS 370 (377)
Q Consensus 307 ~i~gl~~rl~~eL~~~~----------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~ 370 (377)
++|||.+||++||++++ |...+++|..++++.+++|+|||++|++++|+++||||+||+|+|++
T Consensus 324 ~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~ 403 (414)
T PTZ00280 324 MFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPS 403 (414)
T ss_pred cCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChH
Confidence 99999999999999986 34567899999999999999999999999999999999999999999
Q ss_pred cccccc
Q 017089 371 IVHRKC 376 (377)
Q Consensus 371 ~~~~k~ 376 (377)
+++++.
T Consensus 404 i~~~~~ 409 (414)
T PTZ00280 404 ICRYNN 409 (414)
T ss_pred heeecc
Confidence 998873
No 7
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=3.6e-76 Score=566.95 Aligned_cols=368 Identities=51% Similarity=0.972 Sum_probs=323.8
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccCCHHH
Q 017089 4 TEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 83 (377)
+|+.++||||+||.+||+||+||+.|++++|++++++..... ..++++|++.........+++|+++|.+.||+.
T Consensus 1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 75 (393)
T PF00022_consen 1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDA 75 (393)
T ss_dssp -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHH
T ss_pred CCCCCEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccc
Confidence 478999999999999999999999999999999998876542 125788988766667778999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCceE
Q 017089 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 163 (377)
++.+|+++|.+.|..+++++++++++|+++++..|+.+++++||++++++++++++++||+|++|.++|||||+|++.|+
T Consensus 76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~ 155 (393)
T PF00022_consen 76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTS 155 (393)
T ss_dssp HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EE
T ss_pred cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeee
Confidence 99999999987899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCC-----------------ccchhHHHHHHHHHHhccceecCHH
Q 017089 164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS-----------------FTTTAEREIVRDMKEKLAYIALDYE 226 (377)
Q Consensus 164 i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~-----------------~~~~~~~~~~~~ik~~~~~v~~~~~ 226 (377)
|+||+||+++.++.+++++||++++++|.++|.+++.. +....+...++++|+++|+++.+..
T Consensus 156 v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 235 (393)
T PF00022_consen 156 VVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPD 235 (393)
T ss_dssp EEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHH
T ss_pred eeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccc
Confidence 99999999999999999999999999999999987433 2233457889999999999999887
Q ss_pred HHHHHhccCCCcceEEEcCCCcEEeeCCccccccccCCCCccCCCcCC-------ChHHHHHHHHhcCCHHHHHHhhcCc
Q 017089 227 QELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAA-------GIHETTYNSIMKCDVDIRKDLYGNI 299 (377)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~-------~l~~~I~~~i~~~~~~~~~~l~~nI 299 (377)
... ...........|.+|||+.+.++.+|+.++|+||+|+..+.+.. +|+++|.++|++||++.|+.|++||
T Consensus 236 ~~~-~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nI 314 (393)
T PF00022_consen 236 EEQ-EEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNI 314 (393)
T ss_dssp HHH-HHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTE
T ss_pred ccc-ccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccce
Confidence 511 11112456788999999999999999999999999999887766 9999999999999999999999999
Q ss_pred ccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC-CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017089 300 VLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 300 il~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~-~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
|||||+|++|||.+||++||..+.|...++++..++ +|.+++|+|||++|++.+|+++||||+||+|+|+++++||||
T Consensus 315 vl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 315 VLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp EEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred EEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 999999999999999999999999888899999999 999999999999999999999999999999999999999998
No 8
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.1e-74 Score=552.26 Aligned_cols=369 Identities=68% Similarity=1.182 Sum_probs=340.0
Q ss_pred CcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccCCHHHHHHH
Q 017089 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI 87 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~~ 87 (377)
++||||+||++||+||++++.|++++||+++++++.....+ ....+++|+++....+...+++|+++|.+.||+.++.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence 58999999999999999999999999999998865432111 23467899998776666689999999999999999999
Q ss_pred HHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCceEEEEe
Q 017089 88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (377)
Q Consensus 88 ~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~~v 167 (377)
|+++|.+.|+..++++|+++++|..++...|+.+++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 160 (373)
T smart00268 81 WDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPV 160 (373)
T ss_pred HHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEE
Confidence 99999778999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhcc---CCCcceEEEc
Q 017089 168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKT---SSAVEKSYEL 244 (377)
Q Consensus 168 ~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~ 244 (377)
+||.++.++.+++++||++++++|.++|++++..+....+.+.++++|+++|+++.+++++++.... .......|.+
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (373)
T smart00268 161 VDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL 240 (373)
T ss_pred ECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC
Confidence 9999999999999999999999999999886666655667789999999999999998877765432 2445678999
Q ss_pred CCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCC
Q 017089 245 PDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP 324 (377)
Q Consensus 245 p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~ 324 (377)
|||..+.++.+|+.++|+||+|+..+.+..+|+++|.++|.+||.+.|+.+++||+||||+|++|||.+||++||+.+.|
T Consensus 241 pdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p 320 (373)
T smart00268 241 PDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAP 320 (373)
T ss_pred CCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017089 325 SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 325 ~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
...++++..++++.+++|.|||++|++++|++.||||+||+|+|+++++||||
T Consensus 321 ~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 321 KKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred CCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 88889999999999999999999999999999999999999999999999998
No 9
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=3.1e-75 Score=518.37 Aligned_cols=369 Identities=40% Similarity=0.753 Sum_probs=320.5
Q ss_pred CCCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhc-ccCcceeeccccCCccCCH
Q 017089 3 DTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNW 81 (377)
Q Consensus 3 ~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~-~~~~~~~~~p~~~g~i~d~ 81 (377)
-+++..+||||+||++||+||||++.|++++|+.++.....+.-. .+...++++.++.. ++....++.|+++|.+.||
T Consensus 7 ggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~-~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dW 85 (426)
T KOG0679|consen 7 GGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDA-EDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDW 85 (426)
T ss_pred cccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCcc-ccccceEeechhccCCCCCCeeccchhcCCcccH
Confidence 478899999999999999999999999999999998532221101 12334688888755 4677889999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCc
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
|.++.+|+|.|.++|+.+|.++|+++++|+.++++.|++++|.+||++++|+++++..++|++|++|+.|+||||||+++
T Consensus 86 D~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~ 165 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATH 165 (426)
T ss_pred HHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchh---------------------------------HH
Q 017089 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTA---------------------------------ER 208 (377)
Q Consensus 162 t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~---------------------------------~~ 208 (377)
|+|+||+||+++.+++++.++||++|+..++++|..+++++.... ..
T Consensus 166 ~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~ 245 (426)
T KOG0679|consen 166 TSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQ 245 (426)
T ss_pred ceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876543210 02
Q ss_pred HHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcCCCcEEeeCCccccccccCCCCccCC------------CcCCCh
Q 017089 209 EIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIG------------MEAAGI 276 (377)
Q Consensus 209 ~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~------------~~~~~l 276 (377)
..++++|++.+.++..+-.+.. ...-.++.|++|||....++.+||++||.||.|+... ....|+
T Consensus 246 ~v~~e~ke~v~qv~dtp~de~~---~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~ 322 (426)
T KOG0679|consen 246 RVYQEFKESVLQVSDTPFDEEV---AAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGL 322 (426)
T ss_pred HHHHHHHHHHHhccCCCCcccc---cccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCc
Confidence 2355666666655422211111 1123578999999999999999999999999998742 235699
Q ss_pred HHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC---CCccccchhhhhhhcccc
Q 017089 277 HETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLST 353 (377)
Q Consensus 277 ~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l~~ 353 (377)
++++..+|..||+|+|+.|+.|||+|||+|.||||.+||++||+.++|.+ ++++++.. ++.+++|+||||+|+|++
T Consensus 323 ~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgt 401 (426)
T KOG0679|consen 323 PHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGT 401 (426)
T ss_pred hHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhcccc
Confidence 99999999999999999999999999999999999999999999999987 99998864 799999999999999999
Q ss_pred cccccccHHHHhhcCC-ccccccc
Q 017089 354 FQQMWIAKAEYDESGP-SIVHRKC 376 (377)
Q Consensus 354 ~~~~~itr~~y~e~G~-~~~~~k~ 376 (377)
|+++||||+||+|.|. +-+.|||
T Consensus 402 Fqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 402 FQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred HHHHhhhHHHHHHhhhHHHHhhcC
Confidence 9999999999999999 8899998
No 10
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=4.7e-72 Score=533.69 Aligned_cols=367 Identities=70% Similarity=1.195 Sum_probs=335.6
Q ss_pred cEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccC-cceeeccccCCccCCHHHHHHH
Q 017089 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG-ILTLKYPIEHGIVSNWDDMEKI 87 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~p~~~g~i~d~~~~~~~ 87 (377)
+||||+||+++|+||++++.|++++||++++++......+.+....++|+++..... ...+++|+++|.+.||+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 689999999999999999999999999999887654333334567889999877654 3789999999999999999999
Q ss_pred HHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCceEEEEe
Q 017089 88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (377)
Q Consensus 88 ~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~~v 167 (377)
|+++|.+.|..+++++++++++|+.++...|+++++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999878888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHh-ccCCCcceEEEcCC
Q 017089 168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETA-KTSSAVEKSYELPD 246 (377)
Q Consensus 168 ~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~p~ 246 (377)
+||+++.++..++++||+++++++.++|++++..+....+...++++|+++|+++.++.++.... .........|.+||
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd 240 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD 240 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC
Confidence 99999999899999999999999999999888766666678899999999999999887765322 22344567899999
Q ss_pred CcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCC-
Q 017089 247 GQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS- 325 (377)
Q Consensus 247 ~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~- 325 (377)
+..+.++.+|+.++|+||+|+..+....+|+++|.++|+.||.+.|+.+++||+||||+|++|||.+||++||..+.|.
T Consensus 241 ~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~ 320 (371)
T cd00012 241 GRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS 320 (371)
T ss_pred CeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc
Confidence 9999999999999999999998888889999999999999999999999999999999999999999999999999987
Q ss_pred -CceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccc
Q 017089 326 -SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRK 375 (377)
Q Consensus 326 -~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k 375 (377)
...+++...++|.+++|+|||++|++.+|++.||||+||+|+|+++++||
T Consensus 321 ~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 321 KDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred cceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 56678888889999999999999999999999999999999999999987
No 11
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=1.5e-72 Score=476.87 Aligned_cols=371 Identities=50% Similarity=0.910 Sum_probs=345.0
Q ss_pred CCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCc--cccCCCcceeeccchhcccCcceeeccccCCccCCHH
Q 017089 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~--~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~ 82 (377)
++.++||.|.|+.+.|+||||++.|.+++|+.+++|--... .....-+++.||+++...++..++.||+.+|.+.||+
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwd 81 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWD 81 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChH
Confidence 46899999999999999999999999999999999843221 1112236788999999888889999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCce
Q 017089 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t 162 (377)
+++++|+|.|.+.|++++.+.++++++||++|...|+++++..||+++|..+++.-++++++|+.|..+|+|||.|.+.|
T Consensus 82 dM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT 161 (389)
T KOG0677|consen 82 DMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 161 (389)
T ss_pred HHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCcceEE
Q 017089 163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 242 (377)
Q Consensus 163 ~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
.|+||++|..+++-..+++++|++++++|.++|..+|+.++.+++.+.++++|+++||++.|.+.+.+....+...-..|
T Consensus 162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999988887777777788999
Q ss_pred EcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhh
Q 017089 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL 322 (377)
Q Consensus 243 ~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~ 322 (377)
.+|||..|.++.|||.+||.||+|.+++-+.+++.+++.++|+..++|.|..+.++|||+||++..||+..||++||+++
T Consensus 242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql 321 (389)
T KOG0677|consen 242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL 321 (389)
T ss_pred ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC-----------CCceEEEECCCCCccccchhhhhhhcc-cccccccccHHHHhhcCCcccccc
Q 017089 323 AP-----------SSMKIKVVAPPERKYSVWIGGSILASL-STFQQMWIAKAEYDESGPSIVHRK 375 (377)
Q Consensus 323 ~~-----------~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~~~~itr~~y~e~G~~~~~~k 375 (377)
.- ...+++|-.||-+..-+|+||+++|.+ .+-+++|+||+||+|.|++.+.+.
T Consensus 322 yl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 322 YLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 42 134688888999999999999999995 667899999999999999988764
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.5e-68 Score=507.71 Aligned_cols=374 Identities=55% Similarity=0.998 Sum_probs=339.1
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecC-CCCccccCCCcceeeccchhcccC--cceeeccccCCccCC
Q 017089 4 TEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVSN 80 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~-~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~p~~~g~i~d 80 (377)
.++.+++|||+||+++|+||+|++.|++++|+++++.+ +..++....+.+.++|+++....+ ...+++|+++|.+.|
T Consensus 3 ~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~ 82 (444)
T COG5277 3 GDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILN 82 (444)
T ss_pred CCCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCC
Confidence 44555599999999999999999999999999999886 444444555778899999877755 678999999999999
Q ss_pred HHHHHHHHHHhccc--ccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCc--eEEEEe
Q 017089 81 WDDMEKIWHHTFYN--ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--TGIVLD 156 (377)
Q Consensus 81 ~~~~~~~~~~~~~~--~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--~~lVVD 156 (377)
|++++++|+|+|.+ .+...+.++|+++++|++++...|+++++++||.++++++++..+++|++|+.|.. +|||||
T Consensus 83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD 162 (444)
T COG5277 83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVID 162 (444)
T ss_pred cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEE
Confidence 99999999999988 68888899999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHH-----cCCCccch---hHHHHHHHHHHhcc-------ce
Q 017089 157 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTT---AEREIVRDMKEKLA-------YI 221 (377)
Q Consensus 157 iG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~~~---~~~~~~~~ik~~~~-------~v 221 (377)
+|++.|+|+||+||.++.++.+++++||++++.+|.++|.. +++.+... .+.++++.+|++.| |+
T Consensus 163 ~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~ 242 (444)
T COG5277 163 SGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYV 242 (444)
T ss_pred cCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccch
Confidence 99999999999999999999999999999999999999998 66666665 56899999999999 88
Q ss_pred ecCHHHHHHHhcc----------------CCCcceEEEcCCCcEEeeCCc-cccccccCCCCc--cCCCcCCC-------
Q 017089 222 ALDYEQELETAKT----------------SSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPS--MIGMEAAG------- 275 (377)
Q Consensus 222 ~~~~~~~~~~~~~----------------~~~~~~~~~~p~~~~i~i~~~-~~~~~E~lf~p~--~~~~~~~~------- 275 (377)
..+.+++.+.... .......+..|+++.+.+..+ ||++||.+|.|. ..+.+.++
T Consensus 243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~ 322 (444)
T COG5277 243 SLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQ 322 (444)
T ss_pred hhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhh
Confidence 7776665543322 223456789999999999988 999999999999 65544444
Q ss_pred --------------------hHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 017089 276 --------------------IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335 (377)
Q Consensus 276 --------------------l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~ 335 (377)
|++++.++|+.|+.+.|+.|++|||||||+|++|||.+||++||+.+.|..+.+++..++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~ 402 (444)
T COG5277 323 ELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPP 402 (444)
T ss_pred hhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCC
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017089 336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 336 ~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
+|.+.+|+|||++|++..|.+.||||+||+|+|+++++++||
T Consensus 403 ~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 403 DPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred chhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999999999999999999999987
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=4.6e-66 Score=449.22 Aligned_cols=362 Identities=30% Similarity=0.570 Sum_probs=326.9
Q ss_pred CCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhccc--CcceeeccccCCccCCHHH
Q 017089 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR--GILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~p~~~g~i~d~~~ 83 (377)
+..+||+|+|++++|+|+++++.|. ++|||+.+.++. .+..++|++..+.. +...+++|+++|.+.+|+.
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~-------~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~t 73 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFG-------RRRSFLANEIDECKDISSLFYRRPHERGYLVNWDT 73 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCce-eccchhhhcccc-------cchhhhhhhhhhccCccceEEeehhhcceeEeehh
Confidence 4679999999999999999999998 569999876653 44578888876664 4566789999999999999
Q ss_pred HHHHHHHhcccc-cccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeeccccccccc---C--------Cce
Q 017089 84 MEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS---G--------RTT 151 (377)
Q Consensus 84 ~~~~~~~~~~~~-L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~---g--------~~~ 151 (377)
..++|+++|.+. .+.+.+++.+++++|.++-++..+...+++||+++|.+++-.+.+.++++-. + ..+
T Consensus 74 q~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c 153 (400)
T KOG0680|consen 74 QSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSEC 153 (400)
T ss_pred HHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccce
Confidence 999999999653 4566789999999999999999999999999999999999999888888751 1 237
Q ss_pred EEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHH
Q 017089 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET 231 (377)
Q Consensus 152 ~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~ 231 (377)
++|||.|++.|.|+|+++|.+..++++++++||+.++++|++.+..++++... +...++++|+..|||++|+.+.+..
T Consensus 154 ~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVSqnF~~~m~~ 231 (400)
T KOG0680|consen 154 CLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD--ETYVVNEIKEDVCFVSQNFKEDMDI 231 (400)
T ss_pred EEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc--hhhhhhhhhhheEEechhhHHHHHH
Confidence 99999999999999999999999999999999999999999999988887754 7789999999999999999999887
Q ss_pred hccCC---CcceEEEcCC-------------------CcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCH
Q 017089 232 AKTSS---AVEKSYELPD-------------------GQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDV 289 (377)
Q Consensus 232 ~~~~~---~~~~~~~~p~-------------------~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~ 289 (377)
+.... .....|.+|| .+.+.+..|||.+||+||+|++++..+.|++|+|.++|..||.
T Consensus 232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe 311 (400)
T KOG0680|consen 232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE 311 (400)
T ss_pred HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence 65542 3456777776 3678889999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCC
Q 017089 290 DIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369 (377)
Q Consensus 290 ~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~ 369 (377)
.+|+.|+.|||++||++++|||.+||..||++++|.++.++|..+.||..-+|.||+.++.+++|...||||+||+|+|+
T Consensus 312 ~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~ 391 (400)
T KOG0680|consen 312 EVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGP 391 (400)
T ss_pred HHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 017089 370 SIVHRKCF 377 (377)
Q Consensus 370 ~~~~~k~~ 377 (377)
+++.+|.|
T Consensus 392 ~~~~~~~~ 399 (400)
T KOG0680|consen 392 SWCTKKRF 399 (400)
T ss_pred hhhhhhcc
Confidence 99999876
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=2.2e-53 Score=392.49 Aligned_cols=365 Identities=28% Similarity=0.572 Sum_probs=311.5
Q ss_pred CCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccC-cceeeccccCCccCCHHHH
Q 017089 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG-ILTLKYPIEHGIVSNWDDM 84 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~-~~~~~~p~~~g~i~d~~~~ 84 (377)
...|||||+||+.+|+|++|+..|+++|++.+.++++... +....+||++...... -...++||++.++++|+.+
T Consensus 22 n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~----~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~ 97 (645)
T KOG0681|consen 22 NTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKL----GASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELM 97 (645)
T ss_pred CCCcEEEeCCceeEeecccCCCCccchhhhhhcccccccc----ccccccccchhhhhhhhhccCCCCCcCCccccHHHH
Confidence 3678999999999999999999999999999999986542 1223367776554322 2356899999999999999
Q ss_pred HHHHHHhcccccccCC--CCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccc-cCC---ceEEEEeCC
Q 017089 85 EKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA-SGR---TTGIVLDSG 158 (377)
Q Consensus 85 ~~~~~~~~~~~L~~~~--~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~-~g~---~~~lVVDiG 158 (377)
|++++|+| .+|+.+. -+||+++|++..+|...|..+.++|||.+|+|+|.+--+++.+.|. ++. .+|+||++|
T Consensus 98 E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g 176 (645)
T KOG0681|consen 98 EQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMG 176 (645)
T ss_pred HHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecC
Confidence 99999999 8899886 4899999999999999999999999999999999999999999883 333 369999999
Q ss_pred CCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccC---
Q 017089 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS--- 235 (377)
Q Consensus 159 ~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~--- 235 (377)
++.|.|.||.||..+...++++++||.+...||..+++.++.-+.+...+..+++++..+|+++.|+.+++.+....
T Consensus 177 ~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~ 256 (645)
T KOG0681|consen 177 HSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYY 256 (645)
T ss_pred CCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999998776665555667788999999999988876643311100
Q ss_pred ----------------------------------------------------------------------CCcceEE---
Q 017089 236 ----------------------------------------------------------------------SAVEKSY--- 242 (377)
Q Consensus 236 ----------------------------------------------------------------------~~~~~~~--- 242 (377)
.+....|
T Consensus 257 d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll 336 (645)
T KOG0681|consen 257 DENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLL 336 (645)
T ss_pred hccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhh
Confidence 0000000
Q ss_pred EcCC----------------------------------------------------------------------------
Q 017089 243 ELPD---------------------------------------------------------------------------- 246 (377)
Q Consensus 243 ~~p~---------------------------------------------------------------------------- 246 (377)
.+|+
T Consensus 337 ~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~ 416 (645)
T KOG0681|consen 337 NVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKD 416 (645)
T ss_pred cchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0000
Q ss_pred --------------------------------------------------------------------------------
Q 017089 247 -------------------------------------------------------------------------------- 246 (377)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (377)
T Consensus 417 r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~ 496 (645)
T KOG0681|consen 417 RKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTT 496 (645)
T ss_pred hhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCccccccccccc
Confidence
Q ss_pred -------------CcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHH
Q 017089 247 -------------GQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD 313 (377)
Q Consensus 247 -------------~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~ 313 (377)
...+.++.+++++||++|+|+++|.+++||.|++...+++.|.+.+..+.+||+||||+|.+||+++
T Consensus 497 d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmke 576 (645)
T KOG0681|consen 497 DPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKE 576 (645)
T ss_pred CcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHH
Confidence 0145567799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccc
Q 017089 314 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRK 375 (377)
Q Consensus 314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k 375 (377)
||.+||.++.|..++|.|..+.||.+++|.||+.+|...+|...++||+||+|+|+..++.-
T Consensus 577 Ri~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh 638 (645)
T KOG0681|consen 577 RIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEH 638 (645)
T ss_pred HHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877643
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=5.5e-52 Score=361.85 Aligned_cols=367 Identities=40% Similarity=0.689 Sum_probs=312.4
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCc--------cccCCCcceeeccchhcccCcceeeccccCCcc
Q 017089 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV 78 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~--------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i 78 (377)
+.++|+|+|+.++|.||+|+..|++++|++++......+ .-+..+.++++|++++. .+.+.+.+|+++|.+
T Consensus 4 ~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~v 82 (415)
T KOG0678|consen 4 NLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQV 82 (415)
T ss_pred CCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceecccc
Confidence 455999999999999999999999999999876432211 11234568899999988 557889999999999
Q ss_pred CCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccC--------Cc
Q 017089 79 SNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG--------RT 150 (377)
Q Consensus 79 ~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~~ 150 (377)
.||+.++++|...+.+.|..+|++|..++++|++++.++|+.+.++.||.++++.+++.-++++|+-+.- .-
T Consensus 83 e~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~l 162 (415)
T KOG0678|consen 83 EDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFL 162 (415)
T ss_pred ccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 9999999999999889999999999999999999999999999999999999999999999988866542 35
Q ss_pred eEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHH
Q 017089 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELE 230 (377)
Q Consensus 151 ~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~ 230 (377)
+|+|||.|.+.|.|.||.+|+++-++.+..|+.|++++..+.++|++++..++.....+.++.+|+++||+.+|.-++..
T Consensus 163 tG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~ 242 (415)
T KOG0678|consen 163 TGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFA 242 (415)
T ss_pred eeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999998888888777889999999999999999887766
Q ss_pred HhccCCCc-ceEE---EcCCC--cEEeeCCccccccccCCCCccCCCc-CCChHHHHHHHHhcCCHHHHHHhhcCccccc
Q 017089 231 TAKTSSAV-EKSY---ELPDG--QVITIGAERFRCPEVLFQPSMIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSG 303 (377)
Q Consensus 231 ~~~~~~~~-~~~~---~~p~~--~~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIil~G 303 (377)
++...+.. .+.| .+-.+ ..+.++.+||..+|++|.|.....+ ...|++.+...|+.||+|.|+.|++||++.|
T Consensus 243 k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsg 322 (415)
T KOG0678|consen 243 KYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSG 322 (415)
T ss_pred HhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhcc
Confidence 55432211 0111 11122 2456788999999999999886543 5579999999999999999999999999999
Q ss_pred CCcCCcChHHHHHHHHHhhCC--------------CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCC
Q 017089 304 GSTMFPGIADRMSKEITALAP--------------SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369 (377)
Q Consensus 304 G~s~i~gl~~rl~~eL~~~~~--------------~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~ 369 (377)
|.+..++|.+|++++++.+.. ....+.++...-..+++|.|++++++...|-..+=||++|+|+|+
T Consensus 323 gst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~ 402 (415)
T KOG0678|consen 323 GSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGP 402 (415)
T ss_pred chHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhCh
Confidence 999999999999988875431 112356666666789999999999999999999999999999999
Q ss_pred ccccc
Q 017089 370 SIVHR 374 (377)
Q Consensus 370 ~~~~~ 374 (377)
+|++.
T Consensus 403 si~r~ 407 (415)
T KOG0678|consen 403 SICRT 407 (415)
T ss_pred hhhhc
Confidence 99875
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=6.9e-40 Score=301.07 Aligned_cols=313 Identities=19% Similarity=0.379 Sum_probs=241.0
Q ss_pred CcceeeccccCCccCC----------HHHHHHHHHHhcccccccCC---CCCcEEEeeCCCCCHHhHHHHHhhccccCCC
Q 017089 65 GILTLKYPIEHGIVSN----------WDDMEKIWHHTFYNELRVAP---EEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 65 ~~~~~~~p~~~g~i~d----------~~~~~~~~~~~~~~~L~~~~---~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
..+.+++|+++|.+.- .+++.++|+|++.+.|++++ ..+.+|+++|..+.+.+.+.++.++|-+++|
T Consensus 177 ~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F 256 (618)
T KOG0797|consen 177 SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGF 256 (618)
T ss_pred CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhcc
Confidence 3578899999997642 37789999999989999985 4789999999999999999999999999999
Q ss_pred CeEEeeecccccccccCCceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCc-----cchh
Q 017089 132 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSF-----TTTA 206 (377)
Q Consensus 132 ~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~-----~~~~ 206 (377)
.++.++.+++||+|+.|.+++||||||+..|+|+||.||..++++...+++||.+|++.+..+|++.+..+ ....
T Consensus 257 ~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~ 336 (618)
T KOG0797|consen 257 NSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPI 336 (618)
T ss_pred ceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887654 3456
Q ss_pred HHHHHHHHHHhccceecCHH-HHHHHhc--cCCC--cce--------------------------------EEEcCCCc-
Q 017089 207 EREIVRDMKEKLAYIALDYE-QELETAK--TSSA--VEK--------------------------------SYELPDGQ- 248 (377)
Q Consensus 207 ~~~~~~~ik~~~~~v~~~~~-~~~~~~~--~~~~--~~~--------------------------------~~~~p~~~- 248 (377)
++..++++|+++|......- .....+. .+.. ... .|..||.+
T Consensus 337 d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d 416 (618)
T KOG0797|consen 337 DWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDRED 416 (618)
T ss_pred cHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCccc
Confidence 78899999999998753211 1111110 0000 001 12222210
Q ss_pred ----------------------EEeeC-------CccccccccCCCCccC-----------------------------C
Q 017089 249 ----------------------VITIG-------AERFRCPEVLFQPSMI-----------------------------G 270 (377)
Q Consensus 249 ----------------------~i~i~-------~~~~~~~E~lf~p~~~-----------------------------~ 270 (377)
...++ ..|-..+|..-.+.+. -
T Consensus 417 ~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~ 496 (618)
T KOG0797|consen 417 LFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLY 496 (618)
T ss_pred ccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhccccee
Confidence 00000 0011111111111100 0
Q ss_pred C----cCCChHHHHHHHHhcC-CHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCC----ceEEEECCC---CCc
Q 017089 271 M----EAAGIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS----MKIKVVAPP---ERK 338 (377)
Q Consensus 271 ~----~~~~l~~~I~~~i~~~-~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~----~~v~v~~~~---~~~ 338 (377)
. -...+.+.|..+|..+ ..+.+++|.+.|.++||+...||+.+.|++.+....|.. ..|.|+.+| ||+
T Consensus 497 ~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~ 576 (618)
T KOG0797|consen 497 ESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQ 576 (618)
T ss_pred ccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCch
Confidence 0 1224556688888877 567899999999999999999999999999998766652 247787766 899
Q ss_pred cccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017089 339 YSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 339 ~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
+-+|+||+|+|.++.-.++||++.||.-+|.++++.||.
T Consensus 577 ~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 577 FVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred heEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 999999999999998899999999999999999999974
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=7.4e-38 Score=294.56 Aligned_cols=308 Identities=19% Similarity=0.250 Sum_probs=236.5
Q ss_pred cEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcc----cCcceeeccccCCccCCHHHH
Q 017089 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDM 84 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~~ 84 (377)
.++||+||+++|+|++++. +.+..||+++..... ++..++|+++.+. .....+.+|+++|.+.||+..
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~ 81 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEAT 81 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHH
Confidence 3999999999999998765 455679999875421 2346899998765 244678999999999999999
Q ss_pred HHHHHHhccccccc-CCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCC
Q 017089 85 EKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 85 ~~~~~~~~~~~L~~-~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
+.+|++++.+.+.. .....++++++|..++...|+.+.+ +||.+|++.++++++|+||++++|. .+++|||+|
T Consensus 82 e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG 160 (335)
T PRK13930 82 EAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIG 160 (335)
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeC
Confidence 99999999444442 2336789999999999998888777 5799999999999999999999987 578999999
Q ss_pred CCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCc
Q 017089 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAV 238 (377)
Q Consensus 159 ~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
+++|+++++.+|.++ .....++||.++++++.+++.++ +.+. ...+.++++|+++|++..+.+.+. .... ..
T Consensus 161 ~gttdvs~v~~g~~~--~~~~~~lGG~~id~~l~~~l~~~-~~~~--~~~~~ae~~K~~~~~~~~~~~~~~--~~~~-~~ 232 (335)
T PRK13930 161 GGTTEVAVISLGGIV--YSESIRVAGDEMDEAIVQYVRRK-YNLL--IGERTAEEIKIEIGSAYPLDEEES--MEVR-GR 232 (335)
T ss_pred CCeEEEEEEEeCCEE--eecCcCchhHHHHHHHHHHHHHH-hCCC--CCHHHHHHHHHHhhcCcCCCCCce--EEEE-Cc
Confidence 999999999999887 45678999999999999999754 2221 134679999999998865532110 0000 00
Q ss_pred ceEEEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcC-cccccCCcCCcChHHHHHH
Q 017089 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 239 ~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Iil~GG~s~i~gl~~rl~~ 317 (377)
...+.+|+ .+.++.+++ .|++|.+ ..++.+.|.++|.+++.+.+..+++| |+||||+|++|||.+||++
T Consensus 233 ~~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~ 302 (335)
T PRK13930 233 DLVTGLPK--TIEISSEEV--REALAEP------LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSE 302 (335)
T ss_pred cCCCCCCe--eEEECHHHH--HHHHHHH------HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHH
Confidence 01111222 344454444 4777765 23588899999999999989999987 9999999999999999999
Q ss_pred HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++. +++....+|..++-.||++++.-
T Consensus 303 ~~~--------~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 303 ETG--------LPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHC--------CCceecCCHHHHHHHHHHHHHhC
Confidence 984 22333456788999999998754
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.8e-36 Score=283.53 Aligned_cols=306 Identities=19% Similarity=0.257 Sum_probs=229.0
Q ss_pred cEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcc----cCcceeeccccCCccCCHHHH
Q 017089 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDM 84 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~~ 84 (377)
.|+||+||+++|+|+++++. .+.+||+++.++.. +..+++|+++... .....+.+|+++|.+.||+..
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~ 78 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVT 78 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHH
Confidence 59999999999999998876 56789999987542 1246899998765 255678899999999999999
Q ss_pred HHHHHHhcccccccCCCCC-cEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCC
Q 017089 85 EKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 85 ~~~~~~~~~~~L~~~~~~~-~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
+.+|++++.+.+.. +..+ .+++++|..++...| +.++.+|+.+|++.+.++++|+||++++|. .+++|||+|
T Consensus 79 ~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r-~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiG 156 (334)
T PRK13927 79 EKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVER-RAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIG 156 (334)
T ss_pred HHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHH-HHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeC
Confidence 99999999766666 5445 577777766555554 567777899999999999999999999987 467999999
Q ss_pred CCceEEEEe-eCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCC
Q 017089 159 DGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSA 237 (377)
Q Consensus 159 ~~~t~i~~v-~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 237 (377)
+++|+++++ .+|....+ ..++||+++|++|.+++.++ +.+. .+.+.++++|+++|++..+.+.. ..... .
T Consensus 157 ggttdvs~v~~~~~~~~~---~~~lGG~~id~~l~~~l~~~-~~~~--~~~~~ae~iK~~~~~~~~~~~~~--~~~~~-~ 227 (334)
T PRK13927 157 GGTTEVAVISLGGIVYSK---SVRVGGDKFDEAIINYVRRN-YNLL--IGERTAERIKIEIGSAYPGDEVL--EMEVR-G 227 (334)
T ss_pred CCeEEEEEEecCCeEeeC---CcCChHHHHHHHHHHHHHHH-hCcC--cCHHHHHHHHHHhhccCCCCCCc--eEEEe-C
Confidence 999999999 66655433 35899999999999998643 2221 13467999999999875432100 00000 0
Q ss_pred cceEEEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhc-CcccccCCcCCcChHHHHH
Q 017089 238 VEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 238 ~~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIil~GG~s~i~gl~~rl~ 316 (377)
....+.+|+ .+.++.+++ .|++|.| ..++.+.|.++|.+++.+.++.+++ +|+||||+|++||+.+||+
T Consensus 228 ~~~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~ 297 (334)
T PRK13927 228 RDLVTGLPK--TITISSNEI--REALQEP------LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLS 297 (334)
T ss_pred cccCCCCCe--EEEECHHHH--HHHHHHH------HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHH
Confidence 000011121 345555555 3777665 2358899999999999888888887 4999999999999999999
Q ss_pred HHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+++. +++....+|..++-.||++++.-
T Consensus 298 ~~~~--------~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 298 EETG--------LPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHC--------CCcEecCCHHHHHHHHHHHHHhh
Confidence 9983 23334456789999999998754
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.6e-35 Score=277.99 Aligned_cols=311 Identities=16% Similarity=0.214 Sum_probs=231.9
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcc----cCcceeeccccCCccCCHHHHH
Q 017089 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~~~ 85 (377)
+.||+||.++++...++ .-.+..||+++...+.+ +....-+.+|++|... .....+++|+++|.+.||+..+
T Consensus 5 ~giDlGt~~s~i~~~~~-~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR-GIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eEEecCcceEEEEECCC-CEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 99999999999865432 23345688888754321 0012336799998775 3567789999999999999999
Q ss_pred HHHHHhcccccccCCC-CCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCC
Q 017089 86 KIWHHTFYNELRVAPE-EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGD 159 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~-~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~ 159 (377)
.+|++++.+.+..... ..++++++|+.++..+|+. ++.+|+.+|++.+.++++|+||++++|. .+++|||+|+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 9999999666553222 2369999999999999988 5557799999999999999999999987 6899999999
Q ss_pred CceEEEEe-eCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCc
Q 017089 160 GVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAV 238 (377)
Q Consensus 160 ~~t~i~~v-~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
++|++++| .+|..... ..++||+++++.|.+++.++. .. ..+.+.++++|+++|++..+..++.. ... ...
T Consensus 160 gttdvs~v~~~~~~~~~---~~~lGG~did~~l~~~l~~~~-~~--~~~~~~ae~lK~~l~~~~~~~~~~~~-~~~-~~~ 231 (333)
T TIGR00904 160 GTTEVAVISLGGIVVSR---SIRVGGDEFDEAIINYIRRTY-NL--LIGEQTAERIKIEIGSAYPLNDEPRK-MEV-RGR 231 (333)
T ss_pred CeEEEEEEEeCCEEecC---CccchHHHHHHHHHHHHHHHh-cc--cCCHHHHHHHHHHHhccccccccccc-eee-cCc
Confidence 99999999 66655533 358999999999999886432 11 12356799999999987554211110 000 001
Q ss_pred ceEEEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhc-CcccccCCcCCcChHHHHHH
Q 017089 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 239 ~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIil~GG~s~i~gl~~rl~~ 317 (377)
...+.+|++. .++.+ .+.|++|.| ..++.+.|.+++.+++.+.+..+++ +|+||||+|++||+.+||++
T Consensus 232 ~~~~~~~~~~--~i~~~--~~~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~ 301 (333)
T TIGR00904 232 DLVTGLPRTI--EITSV--EVREALQEP------VNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSK 301 (333)
T ss_pred cccCCCCeEE--EECHH--HHHHHHHHH------HHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHH
Confidence 1123445443 33322 566888877 2358888999999999888888886 79999999999999999999
Q ss_pred HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++. +.+....+|..++-.||++++..
T Consensus 302 ~~~--------~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 302 ETG--------LPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHC--------CCceecCChHHHHHHHHHHHHhC
Confidence 993 23445567899999999998653
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=3.5e-35 Score=275.08 Aligned_cols=302 Identities=18% Similarity=0.322 Sum_probs=228.7
Q ss_pred cEEEeCCCCceEEeeeCCCCCC-CCCCceeEecCCCCccccCCCcceeeccchhccc----CcceeeccccCCccCCHHH
Q 017089 9 PLVCDNGTGMVKAGFAGDDAPR-AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~-~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~ 83 (377)
.+.||+||.++++ |... .+. ...||+++..... ..-++||++|..+. ....+.+|+++|.+.||+.
T Consensus 6 ~~giDlGt~~~~i-~~~~-~~~~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~ 76 (335)
T PRK13929 6 EIGIDLGTANILV-YSKN-KGIILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDM 76 (335)
T ss_pred eEEEEcccccEEE-EECC-CcEEecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHH
Confidence 5999999999998 4322 232 3468888764321 12257999997763 5567789999999999999
Q ss_pred HHHHHHHhccc---ccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccC-----CceEEEE
Q 017089 84 MEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVL 155 (377)
Q Consensus 84 ~~~~~~~~~~~---~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVV 155 (377)
.+.+|++++.+ .++..+...++++++|+.++..+|+.+.+ +++.+|++.+.++++|+||++++| ..+++||
T Consensus 77 ~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvv 155 (335)
T PRK13929 77 TTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVV 155 (335)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEE
Confidence 99999999863 45655556789999999999999999999 779999999999999999999997 4679999
Q ss_pred eCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccC
Q 017089 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS 235 (377)
Q Consensus 156 DiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 235 (377)
|+|+++|+++++..|..+ .....++||++++++|.+++.+. +.+.. +...+|++|+++|++..+.+++.....
T Consensus 156 DiG~gtt~v~vi~~~~~~--~~~~~~~GG~~id~~l~~~l~~~-~~~~~--~~~~AE~iK~~l~~~~~~~~~~~~~v~-- 228 (335)
T PRK13929 156 DIGGGTTEVAIISFGGVV--SCHSIRIGGDQLDEDIVSFVRKK-YNLLI--GERTAEQVKMEIGYALIEHEPETMEVR-- 228 (335)
T ss_pred EeCCCeEEEEEEEeCCEE--EecCcCCHHHHHHHHHHHHHHHH-hCcCc--CHHHHHHHHHHHcCCCCCCCCceEEEe--
Confidence 999999999999555444 23346899999999999999753 23222 346799999999987544321100000
Q ss_pred CCcceEEEcCCCcEEeeCCcccc--ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhc-CcccccCCcCCcChH
Q 017089 236 SAVEKSYELPDGQVITIGAERFR--CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIA 312 (377)
Q Consensus 236 ~~~~~~~~~p~~~~i~i~~~~~~--~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIil~GG~s~i~gl~ 312 (377)
.....+.+| ..+.++.+++. +.|.+|+ +.+.|.++|.+++.+.+..+++ +|+||||+|++|||.
T Consensus 229 -g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~ 295 (335)
T PRK13929 229 -GRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIK 295 (335)
T ss_pred -CCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHH
Confidence 000011222 35666666665 4566653 8999999999999999989998 699999999999999
Q ss_pred HHHHHHHHhhCCCCceEEEECCCCCccccchhhhhh
Q 017089 313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 313 ~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
+|+++++.- .+....+|..++-.|+..+
T Consensus 296 e~l~~~~~~--------~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 296 EWLSEEIVV--------PVHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHCC--------CceeCCCHHHHHHHHHHHH
Confidence 999999932 2333567889999998776
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=3.6e-33 Score=255.95 Aligned_cols=305 Identities=19% Similarity=0.276 Sum_probs=219.7
Q ss_pred CcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcc----cCcceeeccccCCccCCHHH
Q 017089 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~ 83 (377)
+.+.||+||.+|++ |..+..=.+..||+++..+.. ..-..+|++|..+ .....+.+|+++|.|.|++.
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~-------~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~ 73 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT-------GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEA 73 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHH
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCC-------CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHH
Confidence 46899999999999 444444344568888876653 2335689999776 35678999999999999999
Q ss_pred HHHHHHHhccccccc-CCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeC
Q 017089 84 MEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDS 157 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~-~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi 157 (377)
.+.++++++++..+. ......++++.|...+..+|+.+.+.+ ..+|+..|+++++|+|||+++|. ...+||||
T Consensus 74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 999999999666654 345667999999999999999999998 56999999999999999999985 47899999
Q ss_pred CCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCC
Q 017089 158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSA 237 (377)
Q Consensus 158 G~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 237 (377)
|+++|+++.+..|.++ ....+++||+++++.+.+++++++ ++. .....+|++|++++++....++. ...
T Consensus 153 G~GtTdiavislggiv--~s~si~~gG~~~DeaI~~~ir~~y-~l~--Ig~~tAE~iK~~~g~~~~~~~~~--~~~---- 221 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIV--ASRSIRIGGDDIDEAIIRYIREKY-NLL--IGERTAEKIKIEIGSASPPEEEE--SME---- 221 (326)
T ss_dssp -SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHHHHHH-SEE----HHHHHHHHHHH-BSS--HHHH--EEE----
T ss_pred CCCeEEEEEEECCCEE--EEEEEEecCcchhHHHHHHHHHhh-Ccc--cCHHHHHHHHHhcceeeccCCCc--eEE----
Confidence 9999999999999998 667899999999999999998654 332 25688999999999876443222 110
Q ss_pred cceEEEcCCCcE--EeeC-CccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcC-cccccCCcCCcChHH
Q 017089 238 VEKSYELPDGQV--ITIG-AERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIAD 313 (377)
Q Consensus 238 ~~~~~~~p~~~~--i~i~-~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Iil~GG~s~i~gl~~ 313 (377)
-.--.+-+|.. +.++ .+-..+.+..+.+ +.+.|.++|.++|+++..++++| |+||||+|+++||.+
T Consensus 222 -v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~---------I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~ 291 (326)
T PF06723_consen 222 -VRGRDLITGLPKSIEITSSEVREAIEPPVDQ---------IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDE 291 (326)
T ss_dssp -EEEEETTTTCEEEEEEEHHHHHHHHHHHHHH---------HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHH
T ss_pred -EECccccCCCcEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHH
Confidence 01112223322 2233 2333343444444 89999999999999999887765 999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017089 314 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+|++++ .++|...++|.+++-.|+..+..
T Consensus 292 ~i~~~~--------~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 292 YISEET--------GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999 35566677889999999877654
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.98 E-value=1.3e-31 Score=251.76 Aligned_cols=306 Identities=18% Similarity=0.273 Sum_probs=220.1
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhccc----CcceeeccccCCccCCHHHHH
Q 017089 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~~ 85 (377)
+.||+||.++++... +..-.+..||.++..... +.-..+|+++.... ....+.+|+++|.+.||+..+
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~~psvv~~~~~~-------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~ 77 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLNEPSVVAIDKNT-------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTE 77 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEccCCEEEEECCC-------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHH
Confidence 999999999999655 333334568888765332 12347899987652 455678999999999999999
Q ss_pred HHHHHhcccccccC-CCCCc-EEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCC
Q 017089 86 KIWHHTFYNELRVA-PEEHP-VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 86 ~~~~~~~~~~L~~~-~~~~~-vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
.+|++++ +.+... ...+| +++++|..++...|+. ++.+++.+|++.+.++++|+||++++|. .+++|||+|
T Consensus 78 ~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~~~~r~~-~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiG 155 (336)
T PRK13928 78 KMLKYFI-NKACGKRFFSKPRIMICIPTGITSVEKRA-VREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIG 155 (336)
T ss_pred HHHHHHH-HHHhccCCCCCCeEEEEeCCCCCHHHHHH-HHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeC
Confidence 9999998 444332 34566 8889988877665555 5555699999999999999999999986 679999999
Q ss_pred CCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCc
Q 017089 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAV 238 (377)
Q Consensus 159 ~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
+++|+++++..|..+. ....++||+++++.+.+++..+. .+. ...+.++++|++++.+..+..++ ..... ..
T Consensus 156 ggttdvsvv~~g~~~~--~~~~~lGG~did~~i~~~l~~~~-~~~--~~~~~ae~lK~~~~~~~~~~~~~--~~~v~-g~ 227 (336)
T PRK13928 156 GGTTDIAVLSLGGIVT--SSSIKVAGDKFDEAIIRYIRKKY-KLL--IGERTAEEIKIKIGTAFPGAREE--EMEIR-GR 227 (336)
T ss_pred CCeEEEEEEEeCCEEE--eCCcCCHHHHHHHHHHHHHHHHh-chh--cCHHHHHHHHHHhcccccccCCc--EEEEe-cc
Confidence 9999999999997763 34679999999999999986432 221 13457999999998764331100 00000 00
Q ss_pred ceEEEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhc-CcccccCCcCCcChHHHHHH
Q 017089 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 239 ~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIil~GG~s~i~gl~~rl~~ 317 (377)
.....+|. .+.++.+++. |+++.+ ...+.+.|.+++.+++.+.+...++ +|+||||+|++||+.++|++
T Consensus 228 ~~~~~~~~--~~~i~~~~~~--eii~~~------~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~ 297 (336)
T PRK13928 228 DLVTGLPK--TITVTSEEIR--EALKEP------VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAE 297 (336)
T ss_pred cccCCCce--EEEECHHHHH--HHHHHH------HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHH
Confidence 00001111 2344444433 444433 1237888899999998888888888 79999999999999999999
Q ss_pred HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++.. .+....+|..++-.||++++.-
T Consensus 298 ~~~~--------~v~~~~~P~~ava~Gaa~~~~~ 323 (336)
T PRK13928 298 ETKV--------PVYIAEDPISCVALGTGKMLEN 323 (336)
T ss_pred HHCC--------CceecCCHHHHHHHHHHHHHhc
Confidence 9932 2333457899999999998653
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.94 E-value=1e-26 Score=205.58 Aligned_cols=313 Identities=18% Similarity=0.228 Sum_probs=226.7
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcc----cCcceeeccccCCccCCHH
Q 017089 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~ 82 (377)
.+.+.||+||.+|++- .-+..--...||.++...... ...-..+|++|..+ .+.....+|+++|+|.|++
T Consensus 6 s~diGIDLGTanTlV~-~k~kgIVl~ePSVVAi~~~~~-----~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~ 79 (342)
T COG1077 6 SNDIGIDLGTANTLVY-VKGKGIVLNEPSVVAIESEGK-----TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFE 79 (342)
T ss_pred cccceeeecccceEEE-EcCceEEecCceEEEEeecCC-----CceEEEehHHHHHHhccCCCCceEEeecCCcEeecHH
Confidence 4589999999999994 433433346688887755311 12346799999887 3566789999999999999
Q ss_pred HHHHHHHHhcccccccC--CCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEE
Q 017089 83 DMEKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVL 155 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~--~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVV 155 (377)
..+.+++|.+++..+-. ...-+++++.|.-.+.-.|+.+.+.+ +..+...|+++++|.+|+++.|. +...||
T Consensus 80 ~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvv 158 (342)
T COG1077 80 VTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVV 158 (342)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEE
Confidence 99999999985444222 23445899999999999999999988 77999999999999999999986 358999
Q ss_pred eCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccC
Q 017089 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTS 235 (377)
Q Consensus 156 DiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 235 (377)
|||+++|+|+.+..|-++ ...+..+||+.+++.+.+++++++--.. ..+.++++|.+.+++..+...+..+...
T Consensus 159 DIGgGTTevaVISlggiv--~~~Sirv~GD~~De~Ii~yvr~~~nl~I---Ge~taE~iK~eiG~a~~~~~~~~~~~eV- 232 (342)
T COG1077 159 DIGGGTTEVAVISLGGIV--SSSSVRVGGDKMDEAIIVYVRKKYNLLI---GERTAEKIKIEIGSAYPEEEDEELEMEV- 232 (342)
T ss_pred EeCCCceeEEEEEecCEE--EEeeEEEecchhhHHHHHHHHHHhCeee---cHHHHHHHHHHhcccccccCCccceeeE-
Confidence 999999999999998888 5567899999999999999976432222 3467999999999886532211000000
Q ss_pred CCcceEEEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcC-cccccCCcCCcChHHH
Q 017089 236 SAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADR 314 (377)
Q Consensus 236 ~~~~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Iil~GG~s~i~gl~~r 314 (377)
.......-+|. .+.++.+. +.|.|-.+ ...|.+.|...+.++|.++-.+..++ |++|||+|++.||.+.
T Consensus 233 ~Grdl~~GlPk--~i~i~s~e--v~eal~~~------v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~ 302 (342)
T COG1077 233 RGRDLVTGLPK--TITINSEE--IAEALEEP------LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRL 302 (342)
T ss_pred EeeecccCCCe--eEEEcHHH--HHHHHHHH------HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHh
Confidence 00000001111 12222211 11222111 23488888899999999999999999 9999999999999999
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017089 315 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+.++. .+.++-.++|-..+-+|+.....
T Consensus 303 i~~et--------~~pv~ia~~pL~~Va~G~G~~le 330 (342)
T COG1077 303 LSEET--------GVPVIIADDPLTCVAKGTGKALE 330 (342)
T ss_pred HHhcc--------CCeEEECCChHHHHHhccchhhh
Confidence 99887 45566667787777777655433
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.88 E-value=5.6e-22 Score=176.57 Aligned_cols=210 Identities=16% Similarity=0.182 Sum_probs=159.3
Q ss_pred eccccCCccCCHHHHHHHHHHhcccc-cccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccC
Q 017089 70 KYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 148 (377)
Q Consensus 70 ~~p~~~g~i~d~~~~~~~~~~~~~~~-L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g 148 (377)
..|+++|.|.|++..+.+++++.... -.....-..+++++|..++..+|+.+.+.+ +..|++.+.++++|+|++.+++
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~~~ 106 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAVLQ 106 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHHhc
Confidence 57899999999999999999997321 111233467999999999999999888776 7799999999999999999988
Q ss_pred CceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHH
Q 017089 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQE 228 (377)
Q Consensus 149 ~~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~ 228 (377)
....+|||+|+++|+++.+.+|.++ .....++||+++++.+.+.+. . +.+.+|++|.+++.- ++
T Consensus 107 ~~~~~vvDiGggtt~i~i~~~G~i~--~~~~~~~GG~~it~~Ia~~~~---i------~~~~AE~~K~~~~~~-----~~ 170 (239)
T TIGR02529 107 IKNGAVVDVGGGTTGISILKKGKVI--YSADEPTGGTHMSLVLAGAYG---I------SFEEAEEYKRGHKDE-----EE 170 (239)
T ss_pred CCCcEEEEeCCCcEEEEEEECCeEE--EEEeeecchHHHHHHHHHHhC---C------CHHHHHHHHHhcCCH-----HH
Confidence 8888999999999999999999887 456789999999999876662 2 346788999876521 11
Q ss_pred HHHhccCCCcceEEEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCC
Q 017089 229 LETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF 308 (377)
Q Consensus 229 ~~~~~~~~~~~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i 308 (377)
.. ...+.+. ..+.+.|.+++.+.+. +.|+||||+|++
T Consensus 171 ~~---------------------------~~i~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a~i 207 (239)
T TIGR02529 171 IF---------------------------PVVKPVY---------QKMASIVKRHIEGQGV-------KDLYLVGGACSF 207 (239)
T ss_pred HH---------------------------HHHHHHH---------HHHHHHHHHHHHhCCC-------CEEEEECchhcc
Confidence 10 0001111 1144455555554433 479999999999
Q ss_pred cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhh
Q 017089 309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 309 ~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
||+.++|++.+. +++..+.+|.+++-.|+++
T Consensus 208 pgl~e~l~~~lg--------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 208 SGFADVFEKQLG--------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hhHHHHHHHHhC--------CCcccCCCCCeehhheeec
Confidence 999999999883 2334467889999999864
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.83 E-value=1.8e-19 Score=163.30 Aligned_cols=243 Identities=15% Similarity=0.140 Sum_probs=173.7
Q ss_pred CCCCcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccCCHHHH
Q 017089 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84 (377)
Q Consensus 5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~ 84 (377)
...-.++||+||+++|+=.+ +..+. .++ +|+ ....+++.|.+.|++..
T Consensus 22 ~~~~~~~iDiGSssi~~vv~-~~~~~-----~~~-----------------~~~---------~~~~~vr~G~i~di~~a 69 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVL-DEDGQ-----PVA-----------------GAL---------EWADVVRDGIVVDFIGA 69 (267)
T ss_pred CCCEEEEEEccCceEEEEEE-cCCCC-----EEE-----------------EEe---------ccccccCCCEEeeHHHH
Confidence 45567999999999997554 32222 111 221 23568899999999999
Q ss_pred HHHHHHhccc---ccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCc
Q 017089 85 EKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 85 ~~~~~~~~~~---~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
.+.++++... .++.. -..++++.|......++..+.+.+ +..|++...++.+|.+++.+++...++|||||+++
T Consensus 70 ~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~~~~-~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggt 146 (267)
T PRK15080 70 VTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAIINVV-ESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGT 146 (267)
T ss_pred HHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHHHHH-HHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCc
Confidence 8888888631 33332 456788899888777788777554 88999999999999999998877778999999999
Q ss_pred eEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCcceE
Q 017089 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKS 241 (377)
Q Consensus 162 t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
|+++.+.+|.++ .....++||+++++.+.+.+. . +.+.+|++|.+... .++..
T Consensus 147 t~i~v~~~g~~~--~~~~~~~GG~~it~~Ia~~l~---i------~~~eAE~lK~~~~~-----~~~~~----------- 199 (267)
T PRK15080 147 TGISILKDGKVV--YSADEPTGGTHMSLVLAGAYG---I------SFEEAEQYKRDPKH-----HKEIF----------- 199 (267)
T ss_pred EEEEEEECCeEE--EEecccCchHHHHHHHHHHhC---C------CHHHHHHHHhccCC-----HHHHH-----------
Confidence 999999999887 446789999999999987762 2 34668888876531 00000
Q ss_pred EEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHh
Q 017089 242 YELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA 321 (377)
Q Consensus 242 ~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~ 321 (377)
.+.+.+++. +.+.|.+.+.+. -.+.|+||||+|++||+.+.+++.+..
T Consensus 200 ----------------~ii~~~~~~---------i~~~i~~~l~~~-------~~~~IvLtGG~s~lpgl~e~l~~~lg~ 247 (267)
T PRK15080 200 ----------------PVVKPVVEK---------MASIVARHIEGQ-------DVEDIYLVGGTCCLPGFEEVFEKQTGL 247 (267)
T ss_pred ----------------HHHHHHHHH---------HHHHHHHHHhcC-------CCCEEEEECCcccchhHHHHHHHHhCC
Confidence 000111111 334444444432 346899999999999999999999832
Q ss_pred hCCCCceEEEECCCCCccccchhhhhhh
Q 017089 322 LAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
.+..+++|.++.-.|+++|+
T Consensus 248 --------~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 --------PVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred --------CcccCCCchHHHHHHHHhhC
Confidence 22336788999999998874
No 26
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.82 E-value=5.7e-20 Score=184.46 Aligned_cols=297 Identities=21% Similarity=0.225 Sum_probs=182.4
Q ss_pred cEEEeCCCCceEEeeeCCCCCC--------CCCCceeEecCCCCccccCCCcceeeccchhccc------Ccceee----
Q 017089 9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLK---- 70 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~---- 70 (377)
+|.||+||+++.+++..+..|. ..+||+++...+ ....||..|.... ....++
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG 71 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD---------GGVEVGKEALAAAAEDPKNTISSVKRLMG 71 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC---------CCEEecHHHHHhhhhChhhhHHHHHHHhC
Confidence 4899999999999997654443 245666655322 2456777664320 000000
Q ss_pred -----------ccc--------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHH
Q 017089 71 -----------YPI--------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMT 122 (377)
Q Consensus 71 -----------~p~--------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~ 122 (377)
+|+ ..+.+...+....+++++.. ..++. .-..+|+++|..++..+|+.+.
T Consensus 72 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~--~v~~~VItVPa~f~~~qR~a~~ 149 (599)
T TIGR01991 72 RSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGG--DLVGAVITVPAYFDDAQRQATK 149 (599)
T ss_pred CCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHH
Confidence 122 12233334445555555531 23332 2457999999999999999988
Q ss_pred hhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEee--CCcc-cccceEEecccHHHHHHHHHHH
Q 017089 123 QIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKI 194 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~--~g~~-~~~~~~~~~~GG~~l~~~l~~~ 194 (377)
+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.++
T Consensus 150 ~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 150 DAA-RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HHH-HHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 887 88999999999999999998863 4689999999999999775 3322 1112234589999999999999
Q ss_pred HHHc-CCCccchhH-----HHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcCCCcEEe--eCCcccc-ccccCCC
Q 017089 195 LTER-GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVIT--IGAERFR-CPEVLFQ 265 (377)
Q Consensus 195 l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~--i~~~~~~-~~E~lf~ 265 (377)
+.++ +.+...... ...++..|+.++.- ......+.. +|..+. ++.+.|. +.+.+++
T Consensus 229 l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~--------------~~~~i~i~~-~g~~~~~~itr~efe~l~~~ll~ 293 (599)
T TIGR01991 229 ILKQLGISADLNPEDQRLLLQAARAAKEALTDA--------------ESVEVDFTL-DGKDFKGKLTRDEFEALIQPLVQ 293 (599)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCC--------------ceEEEEEEE-CCcEEEEEEeHHHHHHHHHHHHH
Confidence 8754 333211111 12344555544321 111222222 333333 3333331 2222222
Q ss_pred CccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhh
Q 017089 266 PSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGG 345 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Ga 345 (377)
. +.+.|.+++.... +...-++.|+|+||+|++|++++.+++.+.. .+....+|+.++-.||
T Consensus 294 ~---------i~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GA 354 (599)
T TIGR01991 294 K---------TLSICRRALRDAG--LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGA 354 (599)
T ss_pred H---------HHHHHHHHHHHcC--CChhhCCEEEEECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHH
Confidence 2 4444555554432 2344568899999999999999999877632 1233568899999999
Q ss_pred hhhhcc
Q 017089 346 SILASL 351 (377)
Q Consensus 346 si~a~l 351 (377)
+++|..
T Consensus 355 ai~a~~ 360 (599)
T TIGR01991 355 AIQADL 360 (599)
T ss_pred HHHHHH
Confidence 999875
No 27
>CHL00094 dnaK heat shock protein 70
Probab=99.82 E-value=1.1e-19 Score=183.61 Aligned_cols=297 Identities=19% Similarity=0.217 Sum_probs=181.4
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceeEecCCCCccccCCCcceeeccchhcc------cCcceeec--
Q 017089 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY-- 71 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~-- 71 (377)
..|.||+||+++++++..+..|. ..+||+++... +...++|+.|... .....+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krli 73 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTK---------KGDLLVGQIAKRQAVINPENTFYSVKRFI 73 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcC---------CCCEEECHHHHHhHHhCccceehhhHHhc
Confidence 58999999999999998665554 23455554422 2234566655331 00000111
Q ss_pred --------------cc----------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH
Q 017089 72 --------------PI----------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 72 --------------p~----------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
|+ ....+...+....+++++.. ..++ ..-..+|+++|..++..+|
T Consensus 74 G~~~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg--~~v~~~VItVPa~f~~~qR 151 (621)
T CHL00094 74 GRKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLG--ETVTQAVITVPAYFNDSQR 151 (621)
T ss_pred CCChHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHH
Confidence 11 11122334455566666542 1232 2235699999999999999
Q ss_pred HHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEeeCCccc---ccceEEecccHHHHHHH
Q 017089 119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYAL---PHAILRLDLAGRDLTDA 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~~g~~~---~~~~~~~~~GG~~l~~~ 190 (377)
+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+..+... ..+....++||.++++.
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~ 230 (621)
T CHL00094 152 QATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKK 230 (621)
T ss_pred HHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHH
Confidence 9988877 78999999999999999998874 468999999999999988654222 12233468999999999
Q ss_pred HHHHHHHc-----CCCccchh-----HHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcC------CC-cEE--e
Q 017089 191 LMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP------DG-QVI--T 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p------~~-~~i--~ 251 (377)
|.+++.++ +.++.... -...++++|+.++... ...+.+| +| ..+ .
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~ 294 (621)
T CHL00094 231 IVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT----------------QTEINLPFITATQTGPKHIEKT 294 (621)
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEEeecccCCCCCeeEEEE
Confidence 99887543 22222110 1234666676665311 1111111 01 122 2
Q ss_pred eCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEE
Q 017089 252 IGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIK 330 (377)
Q Consensus 252 i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~ 330 (377)
+..++|. ..+.++.. +.+.|.+++.+. .+...-++.|+|+||+|++|++++.+++.+.. +
T Consensus 295 itR~~fe~l~~~l~~~---------~~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~ 355 (621)
T CHL00094 295 LTRAKFEELCSDLINR---------CRIPVENALKDA--KLDKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------K 355 (621)
T ss_pred EcHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccCChHHHHHHHHHhCC--------C
Confidence 3333222 11212111 333444555443 23344568899999999999999999877632 2
Q ss_pred EECCCCCccccchhhhhhhcc
Q 017089 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++..||+++|..
T Consensus 356 ~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 356 PNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred cCcCCCchhHHHhhhHHHHHH
Confidence 334457889999999999874
No 28
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.81 E-value=2e-19 Score=182.26 Aligned_cols=216 Identities=18% Similarity=0.228 Sum_probs=143.3
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEee--CCcc-c
Q 017089 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~--~g~~-~ 173 (377)
-..+|+++|..++..+|+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|.. +
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 457999999999999999988877 88999999999999999999875 4789999999999999774 4533 2
Q ss_pred ccceEEecccHHHHHHHHHHHHHHc-----CCCccchh-----HHHHHHHHHHhccceecCHHHHHHHhccCCCcceEE-
Q 017089 174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY- 242 (377)
Q Consensus 174 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~- 242 (377)
.......++||.++++.|.+++..+ +.++.... -...+++.|+.++.-. .....+
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~--------------~~~i~i~ 318 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT--------------QTEINLP 318 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC--------------ceEEEEE
Confidence 2223346899999999999888643 22221110 0223566666654210 011111
Q ss_pred -EcCC--C-c--EEeeCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHH
Q 017089 243 -ELPD--G-Q--VITIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRM 315 (377)
Q Consensus 243 -~~p~--~-~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl 315 (377)
...| | . .+.++.+.|. ..+.+|.. +.+.|.+++.+.. +.+.-++.|+|+||+|++|++++.|
T Consensus 319 ~~~~d~~g~~~~~~~itR~efe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l 387 (663)
T PTZ00400 319 FITADQSGPKHLQIKLSRAKLEELTHDLLKK---------TIEPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSETV 387 (663)
T ss_pred eeccCCCCceEEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHHHH
Confidence 1111 1 1 2333333332 22223322 4555556665542 2344578999999999999999998
Q ss_pred HHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 316 SKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 316 ~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++.+.. .+....+|+.++-.||+++|..
T Consensus 388 ~~~f~~--------~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 388 KKIFGK--------EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence 877632 2233557899999999999864
No 29
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.81 E-value=1.1e-19 Score=183.89 Aligned_cols=297 Identities=18% Similarity=0.220 Sum_probs=180.3
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceeEecCCCCccccCCCcceeeccchhccc------Ccceee---
Q 017089 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLK--- 70 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~--- 70 (377)
.+|.||+||+++++++..+..|. ..+||+++... +...++|+.|.... ....++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~---------~~~~~vG~~A~~~~~~~p~~~i~~~Kr~i 73 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTK---------DGERLVGQPAKRQAVTNPENTIFSIKRLM 73 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeC---------CCCEEEcHHHHHhhhhCchhhHHHHHHHh
Confidence 47999999999999998655443 34456555432 22456776654320 001111
Q ss_pred -------------cccc-------------CCccCC-HHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHH
Q 017089 71 -------------YPIE-------------HGIVSN-WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREK 120 (377)
Q Consensus 71 -------------~p~~-------------~g~i~d-~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~ 120 (377)
+|++ .|.... .+....+++++.. ..++. .-..+++++|..++..+|+.
T Consensus 74 G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~--~v~~~VItVPa~f~~~qR~a 151 (627)
T PRK00290 74 GRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGE--KVTEAVITVPAYFNDAQRQA 151 (627)
T ss_pred CCCchHHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC--CCceEEEEECCCCCHHHHHH
Confidence 1110 122122 2334445554421 23332 23579999999999999999
Q ss_pred HHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEeeCCcc---cccceEEecccHHHHHHHHH
Q 017089 121 MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDALM 192 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~~g~~---~~~~~~~~~~GG~~l~~~l~ 192 (377)
+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++++.+.-+.. +..+....++||.++++.|.
T Consensus 152 ~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~ 230 (627)
T PRK00290 152 TKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRII 230 (627)
T ss_pred HHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHH
Confidence 88777 88999999999999999998864 56999999999999988754321 11222346899999999999
Q ss_pred HHHHHc-----CCCccchh-----HHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEc----CC--C-c--EEeeC
Q 017089 193 KILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYEL----PD--G-Q--VITIG 253 (377)
Q Consensus 193 ~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----p~--~-~--~i~i~ 253 (377)
+++.++ +.++.... -...+++.|+.++.-. ...+.+ .| | . .+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~----------------~~~i~i~~~~~d~~g~~~~~~~it 294 (627)
T PRK00290 231 DYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQ----------------QTEINLPFITADASGPKHLEIKLT 294 (627)
T ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------eEEEEEeecccCCCCCeEEEEEEC
Confidence 887543 22221110 0224555666554210 111111 11 1 1 23333
Q ss_pred Ccccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEE
Q 017089 254 AERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV 332 (377)
Q Consensus 254 ~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~ 332 (377)
.+.|. ..+.++.. +.+.|.+++..... ...-++.|+|+||+|++|.+++++++.+.. .+.
T Consensus 295 R~~fe~l~~~l~~~---------~~~~i~~~l~~a~~--~~~~id~ViLvGGssriP~v~~~l~~~fg~--------~~~ 355 (627)
T PRK00290 295 RAKFEELTEDLVER---------TIEPCKQALKDAGL--SVSDIDEVILVGGSTRMPAVQELVKEFFGK--------EPN 355 (627)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhhCcEEEEECCcCCChHHHHHHHHHhCC--------CCC
Confidence 33332 22222222 44555555554432 234468899999999999999999877632 233
Q ss_pred CCCCCccccchhhhhhhcc
Q 017089 333 APPERKYSVWIGGSILASL 351 (377)
Q Consensus 333 ~~~~~~~~~w~Gasi~a~l 351 (377)
...+|+.++..||+++|..
T Consensus 356 ~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 356 KGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred cCcCChHHHHHhHHHHHHH
Confidence 4557899999999999864
No 30
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.80 E-value=2.4e-19 Score=181.71 Aligned_cols=299 Identities=16% Similarity=0.181 Sum_probs=181.8
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceeEecCCCCccccCCCcceeeccchhcc------cCcceee---
Q 017089 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK--- 70 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~--- 70 (377)
.+|.||+||+++++++..+..|. ..+||+++... +...++|+.|... +..+.++
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krli 110 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK---------NGDRLVGQIAKRQAVVNPENTFFSVKRFI 110 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcC---------CCCEEECHHHHHhhhhCchhhhHHHHHhh
Confidence 47999999999999998665554 23455554422 2235566655432 0000010
Q ss_pred -------------ccc----------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH
Q 017089 71 -------------YPI----------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 71 -------------~p~----------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
+|+ ....+...+....+++++.. ..++ ..-..+||++|..++..+|
T Consensus 111 G~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg--~~v~~~VITVPa~f~~~qR 188 (673)
T PLN03184 111 GRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLN--DKVTKAVITVPAYFNDSQR 188 (673)
T ss_pred CCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHH
Confidence 011 11223334555666666542 1232 2246799999999999999
Q ss_pred HHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEeeCCccc---ccceEEecccHHHHHHH
Q 017089 119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYAL---PHAILRLDLAGRDLTDA 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~~g~~~---~~~~~~~~~GG~~l~~~ 190 (377)
+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+.-+... ..+....++||.++++.
T Consensus 189 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~ 267 (673)
T PLN03184 189 TATKDAG-RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 267 (673)
T ss_pred HHHHHHH-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHH
Confidence 9988777 88999999999999999998864 478999999999999887533211 11223468999999999
Q ss_pred HHHHHHHc-----CCCccchh-----HHHHHHHHHHhccceecCHHHHHHHhccCCCcceEE--Ec--CCC-cEE--eeC
Q 017089 191 LMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY--EL--PDG-QVI--TIG 253 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~--p~~-~~i--~i~ 253 (377)
|.+++..+ +.+..... -...+|+.|+.++... .....+ .. .++ ..+ .++
T Consensus 268 L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~--------------~~~i~i~~~~~~~~g~~~~~~~it 333 (673)
T PLN03184 268 IVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT--------------QTSISLPFITATADGPKHIDTTLT 333 (673)
T ss_pred HHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC--------------cceEEEEeeeccCCCCceEEEEEC
Confidence 99888643 22221110 0234556666655321 011111 10 111 222 333
Q ss_pred Ccccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEE
Q 017089 254 AERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV 332 (377)
Q Consensus 254 ~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~ 332 (377)
.+.|. ..+.+++. +.+.|.+++..... ...-++.|+|+||+|++|.++++|++.+.. .+.
T Consensus 334 R~~fe~l~~~l~~r---------~~~~i~~~L~~a~~--~~~dId~ViLvGGssriP~V~~~i~~~fg~--------~~~ 394 (673)
T PLN03184 334 RAKFEELCSDLLDR---------CKTPVENALRDAKL--SFKDIDEVILVGGSTRIPAVQELVKKLTGK--------DPN 394 (673)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhHccEEEEECCccccHHHHHHHHHHhCC--------Ccc
Confidence 33332 22222222 44455555554432 234568999999999999999998877732 122
Q ss_pred CCCCCccccchhhhhhhcc
Q 017089 333 APPERKYSVWIGGSILASL 351 (377)
Q Consensus 333 ~~~~~~~~~w~Gasi~a~l 351 (377)
...+|+.++-.||+++|..
T Consensus 395 ~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 395 VTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred cccCcchHHHHHHHHHHHH
Confidence 3447789999999999874
No 31
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.80 E-value=4.9e-19 Score=176.75 Aligned_cols=226 Identities=16% Similarity=0.183 Sum_probs=149.6
Q ss_pred HHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceE
Q 017089 81 WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTG 152 (377)
Q Consensus 81 ~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~ 152 (377)
.+....+++++-. ..++ ..-..+|+++|..++..+|+.+.+.+ +..|++.+.++++|+||++++|. .+.
T Consensus 119 eei~a~iL~~lk~~ae~~lg--~~v~~aVITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~v 195 (595)
T PRK01433 119 PEIAAEIFIYLKNQAEEQLK--TNITKAVITVPAHFNDAARGEVMLAA-KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCY 195 (595)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCcceEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCcHHHHHHHhcccCCCCEE
Confidence 3444555555531 2233 22357999999999999999988876 88999999999999999999874 357
Q ss_pred EEEeCCCCceEEEEee--CCcc-cccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHH
Q 017089 153 IVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL 229 (377)
Q Consensus 153 lVVDiG~~~t~i~~v~--~g~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~ 229 (377)
+|+|+|+++++|+.+. +|.. +........+||.++++.|.+++..+...-......+.+++.|+.++.-.
T Consensus 196 lV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~ekaK~~LS~~~------- 268 (595)
T PRK01433 196 LVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKD------- 268 (595)
T ss_pred EEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCc-------
Confidence 9999999999998774 4422 11222345799999999999998754211111112334666666554210
Q ss_pred HHhccCCCcceEEEcCCCcEEeeCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCC
Q 017089 230 ETAKTSSAVEKSYELPDGQVITIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF 308 (377)
Q Consensus 230 ~~~~~~~~~~~~~~~p~~~~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i 308 (377)
.+.. ..+.++.+.|. ..+.+|+. +.+.|.+++.... ..-++.|+|+||+|++
T Consensus 269 -----------~~~~---~~~~itr~efe~l~~~l~~~---------~~~~i~~~L~~a~----~~~Id~ViLvGGssri 321 (595)
T PRK01433 269 -----------SFNN---DNISINKQTLEQLILPLVER---------TINIAQECLEQAG----NPNIDGVILVGGATRI 321 (595)
T ss_pred -----------cccc---ceEEEcHHHHHHHHHHHHHH---------HHHHHHHHHhhcC----cccCcEEEEECCcccC
Confidence 0111 14445444432 22333322 4455555555443 2336889999999999
Q ss_pred cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 309 ~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|.+++.+++.+. .++..+.+|+.++-.||+++|..
T Consensus 322 P~v~~~l~~~f~--------~~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 322 PLIKDELYKAFK--------VDILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred hhHHHHHHHHhC--------CCceecCCchHHHHHHHHHHHHH
Confidence 999888887662 12344568899999999999875
No 32
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.80 E-value=1.5e-19 Score=182.40 Aligned_cols=296 Identities=18% Similarity=0.226 Sum_probs=179.1
Q ss_pred cEEEeCCCCceEEeeeCCCCCC--------CCCCceeEecCCCCccccCCCcceeeccchhccc------Ccceeec---
Q 017089 9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLKY--- 71 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~~--- 71 (377)
+|.||+||+++++++..+..|. ..+||+++... +...++|+.|.... ....+++
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~---------~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG 72 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTK---------NGERLVGQPAKRQAVTNPENTIYSIKRFMG 72 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeC---------CCCEEECHHHHHhhhhCchhhhHHHHHHhC
Confidence 6899999999999998655554 23455554422 22456777664320 0111111
Q ss_pred -------------ccc------------CCccCC-HHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHH
Q 017089 72 -------------PIE------------HGIVSN-WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMT 122 (377)
Q Consensus 72 -------------p~~------------~g~i~d-~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~ 122 (377)
|+. .|.... .+....+++++.. ..++. .-..+++++|..++..+|+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~--~v~~~VItVPa~f~~~qR~a~~ 150 (595)
T TIGR02350 73 RRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGE--KVTEAVITVPAYFNDAQRQATK 150 (595)
T ss_pred CCchHHHHHhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHH
Confidence 110 111112 2333445555421 22332 2356999999999999999988
Q ss_pred hhccccCCCCeEEeeecccccccccCC------ceEEEEeCCCCceEEEEeeCC--cc-cccceEEecccHHHHHHHHHH
Q 017089 123 QIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIYEG--YA-LPHAILRLDLAGRDLTDALMK 193 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~~v~~g--~~-~~~~~~~~~~GG~~l~~~l~~ 193 (377)
+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++++.+.-+ .. +..+.....+||.++++.|.+
T Consensus 151 ~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~ 229 (595)
T TIGR02350 151 DAG-KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIID 229 (595)
T ss_pred HHH-HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHH
Confidence 876 88999999999999999998763 468999999999999887432 11 112223457999999999998
Q ss_pred HHHHc-----CCCccchh-----HHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcC----C--C-c--EEeeCC
Q 017089 194 ILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP----D--G-Q--VITIGA 254 (377)
Q Consensus 194 ~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p----~--~-~--~i~i~~ 254 (377)
++..+ +.++.... -...+++.|+.++... ...+.+| + | . .+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~itr 293 (595)
T TIGR02350 230 WLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVL----------------STEINLPFITADASGPKHLEMTLTR 293 (595)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------ceEEEeeecccCCCCCeeEEEEEeH
Confidence 87532 22221110 0234566666654211 1111111 1 1 1 233333
Q ss_pred cccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEEC
Q 017089 255 ERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA 333 (377)
Q Consensus 255 ~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~ 333 (377)
+.|. ..+.++.. +.+.|.+++.+.. +.+.-++.|+|+||+|++|.+.+.+++.+.. ++..
T Consensus 294 ~~fe~l~~~l~~~---------~~~~i~~~l~~a~--~~~~~i~~V~LvGGssriP~v~~~i~~~f~~--------~~~~ 354 (595)
T TIGR02350 294 AKFEELTADLVER---------TKEPVRQALKDAG--LSASDIDEVILVGGSTRIPAVQELVKDFFGK--------EPNK 354 (595)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHhHCcEEEEECCcccChHHHHHHHHHhCC--------cccC
Confidence 3332 22222222 4445555554442 2234568899999999999999998876631 3344
Q ss_pred CCCCccccchhhhhhhcc
Q 017089 334 PPERKYSVWIGGSILASL 351 (377)
Q Consensus 334 ~~~~~~~~w~Gasi~a~l 351 (377)
..+|+.++..||+++|..
T Consensus 355 ~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 355 SVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred CcCcHHHHHHHHHHHHHH
Confidence 568899999999999864
No 33
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.79 E-value=5.4e-19 Score=178.70 Aligned_cols=297 Identities=18% Similarity=0.204 Sum_probs=178.1
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceeEecCCCCccccCCCcceeeccchhcc------cCcceeec--
Q 017089 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY-- 71 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~-- 71 (377)
.+|.||+||+++++++..+..|. ..+||+++... ....+||..|... +....+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~KRli 73 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTK---------DGELLVGQLARRQLVLNPQNTFYNLKRFI 73 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeC---------CCCEEECHHHHHhhHhCccceehHHhhhh
Confidence 57999999999999998655443 34566665532 2235677665432 00111111
Q ss_pred --------------ccc-----CC----------cc-CCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH
Q 017089 72 --------------PIE-----HG----------IV-SNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 72 --------------p~~-----~g----------~i-~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
|+. +| .. .-.+....+++++.. ..++. .-..+||++|..++..+|
T Consensus 74 G~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR 151 (668)
T PRK13410 74 GRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGE--PVTGAVITVPAYFNDSQR 151 (668)
T ss_pred CCCchhhHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHH
Confidence 110 11 11 112333444444431 23332 234699999999999999
Q ss_pred HHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEee--CCcc-cccceEEecccHHHHHHH
Q 017089 119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~--~g~~-~~~~~~~~~~GG~~l~~~ 190 (377)
+.+.+.+ +.+|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~ 230 (668)
T PRK13410 152 QATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKR 230 (668)
T ss_pred HHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHH
Confidence 9988777 88999999999999999999874 4689999999999998775 3322 122223458999999999
Q ss_pred HHHHHHHc-----CCCccchh-----HHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcC----C--C-cE--Ee
Q 017089 191 LMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELP----D--G-QV--IT 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p----~--~-~~--i~ 251 (377)
|.+++..+ +.++.... -...+++.|+.++... ...+.+| + + .. ..
T Consensus 231 l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~ 294 (668)
T PRK13410 231 IVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS----------------VTDISLPFITATEDGPKHIETR 294 (668)
T ss_pred HHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEEeeeecCCCCCeeEEEE
Confidence 99887543 22221110 0123555666554211 1111111 1 1 12 22
Q ss_pred eCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEE
Q 017089 252 IGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIK 330 (377)
Q Consensus 252 i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~ 330 (377)
++.+.|. ..+.++.. +.+.|.+++... .+.+.-++.|+|+||+|++|.+.+.+++.+.. .
T Consensus 295 itR~~FE~l~~~l~~r---------~~~~i~~~L~~a--g~~~~dId~VvLVGGssRiP~V~~~l~~~fg~--------~ 355 (668)
T PRK13410 295 LDRKQFESLCGDLLDR---------LLRPVKRALKDA--GLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPR--------E 355 (668)
T ss_pred ECHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccccHHHHHHHHHHcCC--------C
Confidence 3333321 22222222 444444455432 23345667899999999999888888765531 2
Q ss_pred EECCCCCccccchhhhhhhcc
Q 017089 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++-.||+++|..
T Consensus 356 ~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 356 PNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred cccCCCCchHHHHhHHHHHHh
Confidence 233457889999999999875
No 34
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.79 E-value=5.4e-19 Score=178.99 Aligned_cols=219 Identities=16% Similarity=0.237 Sum_probs=139.9
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC------ceEEEEeCCCCceEEEEee--CCcc-
Q 017089 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA- 172 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~~v~--~g~~- 172 (377)
-..+||++|..++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|..
T Consensus 133 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~ 211 (653)
T PRK13411 133 VTQAVITVPAYFTDAQRQATKDAG-TIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFE 211 (653)
T ss_pred cceEEEEECCCCCcHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEE
Confidence 357999999999999999988876 88999999999999999998864 3589999999999998764 2322
Q ss_pred cccceEEecccHHHHHHHHHHHHHHc-----CCCccchh-----HHHHHHHHHHhccceecCHHHHHHHhccCCCcceEE
Q 017089 173 LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 242 (377)
Q Consensus 173 ~~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
+........+||.++++.|.+++.++ +.++.... -...+++.|+.++.-.. ......+
T Consensus 212 V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~------------~~i~i~~ 279 (653)
T PRK13411 212 VKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLT------------TSINLPF 279 (653)
T ss_pred EEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc------------eEEEEee
Confidence 12222345899999999998887543 22221110 02335555555542100 0001111
Q ss_pred EcCC---Cc--EEeeCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHH
Q 017089 243 ELPD---GQ--VITIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 243 ~~p~---~~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~ 316 (377)
...+ +. .+.++.+.|. ..+.++.. +.+.|.+++.+.. +...-++.|+|+||+|++|.++++|+
T Consensus 280 ~~~d~~~~~~~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~v~~~l~ 348 (653)
T PRK13411 280 ITADETGPKHLEMELTRAKFEELTKDLVEA---------TIEPMQQALKDAG--LKPEDIDRVILVGGSTRIPAVQEAIQ 348 (653)
T ss_pred eccCCCCCeeEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHHHCcEEEEECCCCCcchHHHHHH
Confidence 1111 11 2233333332 12222222 4445555555442 34455689999999999999999988
Q ss_pred HHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.+... ++....+|+.++-.||+++|..
T Consensus 349 ~~f~~~-------~~~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 349 KFFGGK-------QPDRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred HHcCCc-------CcCCCCCchHHHHHHHHHHHHh
Confidence 766321 2334557889999999999864
No 35
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.79 E-value=4.6e-19 Score=178.35 Aligned_cols=295 Identities=19% Similarity=0.167 Sum_probs=177.5
Q ss_pred CcEEEeCCCCceEEeeeCCCCCC--------CCCCceeEecCCCCccccCCCcceeeccchhccc------Cccee----
Q 017089 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTL---- 69 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~---- 69 (377)
.+|.||+||+++.+++..+..|. ..+||+++.. .....+|.+|.... ....+
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~----------~~~~~vG~~A~~~~~~~p~~ti~~~Krli 89 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYL----------EDGIEVGYEARANAAQDPKNTISSVKRFM 89 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEc----------CCCEEEcHHHHHhhHhCchhhHHHHHHHh
Confidence 57999999999999997555443 2345555442 22356776654310 00000
Q ss_pred ------------eccc--------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHH
Q 017089 70 ------------KYPI--------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREK 120 (377)
Q Consensus 70 ------------~~p~--------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~ 120 (377)
..|+ ..|.+...+....+++++.. +.++. .-..+|+++|..++..+|+.
T Consensus 90 G~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a 167 (616)
T PRK05183 90 GRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQA 167 (616)
T ss_pred CCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHH
Confidence 0111 11223333444555555531 23332 34579999999999999999
Q ss_pred HHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEee--CCcc-cccceEEecccHHHHHHHHH
Q 017089 121 MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALM 192 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~--~g~~-~~~~~~~~~~GG~~l~~~l~ 192 (377)
+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.
T Consensus 168 ~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~ 246 (616)
T PRK05183 168 TKDAA-RLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLA 246 (616)
T ss_pred HHHHH-HHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHH
Confidence 87776 88999999999999999988764 4679999999999998875 3321 12222346899999999999
Q ss_pred HHHHHc-CCCccchhH-----HHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcCCCcEEeeCCcccc-ccccCCC
Q 017089 193 KILTER-GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFR-CPEVLFQ 265 (377)
Q Consensus 193 ~~l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~i~~~~~~-~~E~lf~ 265 (377)
+++.++ +.+...... ...++..|+.++.- ....+.+++-. -.++.+.|. ..+.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~i~~~~-~~itr~efe~l~~~l~~ 309 (616)
T PRK05183 247 DWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDA----------------DSVEVSVALWQ-GEITREQFNALIAPLVK 309 (616)
T ss_pred HHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCC----------------ceEEEEEecCC-CeEcHHHHHHHHHHHHH
Confidence 988754 222211100 12344555544321 11222222110 012222221 1122222
Q ss_pred CccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhh
Q 017089 266 PSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGG 345 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Ga 345 (377)
. +.+.|.+++.... +...-++.|+|+||+|++|.+++.|++.+... +..+.+|+.++-.||
T Consensus 310 ~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~--------~~~~~npdeaVA~GA 370 (616)
T PRK05183 310 R---------TLLACRRALRDAG--VEADEVKEVVMVGGSTRVPLVREAVGEFFGRT--------PLTSIDPDKVVAIGA 370 (616)
T ss_pred H---------HHHHHHHHHHHcC--CCcccCCEEEEECCcccChHHHHHHHHHhccC--------cCcCCCchHHHHHHH
Confidence 1 3444444554432 22334678999999999999999988766321 223568899999999
Q ss_pred hhhhcc
Q 017089 346 SILASL 351 (377)
Q Consensus 346 si~a~l 351 (377)
+++|..
T Consensus 371 Ai~a~~ 376 (616)
T PRK05183 371 AIQADI 376 (616)
T ss_pred HHHHHH
Confidence 999874
No 36
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.77 E-value=2.4e-18 Score=173.35 Aligned_cols=218 Identities=17% Similarity=0.186 Sum_probs=142.3
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEee--CCccc-
Q 017089 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYAL- 173 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~--~g~~~- 173 (377)
-..+|+++|..++..+|+.+.+.+ +.+|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|..-
T Consensus 160 v~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V 238 (657)
T PTZ00186 160 VSNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEV 238 (657)
T ss_pred cceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 357999999999999999988777 88999999999999999999874 4789999999999999875 55432
Q ss_pred ccceEEecccHHHHHHHHHHHHHHc-----CCCccchh-----HHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEE
Q 017089 174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYE 243 (377)
Q Consensus 174 ~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
..+....++||.++++.|.+++.++ +.++.... -...+++.|+.++.... ......+.
T Consensus 239 ~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~------------~~i~i~~i 306 (657)
T PTZ00186 239 KATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME------------TEVNLPFI 306 (657)
T ss_pred EEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc------------eEEEEeee
Confidence 2222356899999999999887642 22221110 12346666666653210 00011111
Q ss_pred cC--CC---cEEeeCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHH
Q 017089 244 LP--DG---QVITIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 244 ~p--~~---~~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~ 317 (377)
.. +| ..+.++.+.|. ..+.++.. +.+.+.+++.... +...-++.|+|+||+|+||.+++.+++
T Consensus 307 ~~~~~g~~~~~~~ItR~efe~l~~~l~~r---------~~~~v~~~L~~a~--~~~~dId~VvLVGGssriP~V~~~l~~ 375 (657)
T PTZ00186 307 TANADGAQHIQMHISRSKFEGITQRLIER---------SIAPCKQCMKDAG--VELKEINDVVLVGGMTRMPKVVEEVKK 375 (657)
T ss_pred ccCCCCCcceEEEecHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCCEEEEECCcccChHHHHHHHH
Confidence 11 11 12334433332 22223222 3444445554332 234556889999999999999999887
Q ss_pred HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+... .....+|+.++-.||+++|..
T Consensus 376 ~fg~~--------~~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 376 FFQKD--------PFRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred HhCCC--------ccccCCCchHHHHhHHHHHHH
Confidence 76321 123457899999999999874
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.77 E-value=2.8e-18 Score=173.95 Aligned_cols=215 Identities=16% Similarity=0.214 Sum_probs=142.0
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC-------ceEEEEeCCCCceEEEEee--CCcc
Q 017089 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA 172 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~i~~v~--~g~~ 172 (377)
-..++|++|..++..+|+.+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+. +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHHHH-HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 357999999999999999988777 88999999999999999998863 4789999999999998774 4432
Q ss_pred c-ccceEEecccHHHHHHHHHHHHHHc------CCCccchh-----HHHHHHHHHHhccceecCHHHHHHHhccCCCcce
Q 017089 173 L-PHAILRLDLAGRDLTDALMKILTER------GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKTSSAVEK 240 (377)
Q Consensus 173 ~-~~~~~~~~~GG~~l~~~l~~~l~~~------~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~ 240 (377)
- ..+.....+||.++++.|.+++.++ +.++.... -...+++.|+.++.. ...
T Consensus 219 ~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------------~~~ 282 (653)
T PTZ00009 219 EVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------------TQA 282 (653)
T ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC----------------ceE
Confidence 1 1122245899999999999888642 12221100 023355566555421 112
Q ss_pred EEEcC---CCcEE--eeCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHH
Q 017089 241 SYELP---DGQVI--TIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 314 (377)
Q Consensus 241 ~~~~p---~~~~i--~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~r 314 (377)
.+.++ ++..+ .++.+.|. ..+.+|.. +.+.|.+++.....+ ..-++.|+|+||+|++|.+++.
T Consensus 283 ~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~ 351 (653)
T PTZ00009 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFRN---------TLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSL 351 (653)
T ss_pred EEEEEeccCCceEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHH
Confidence 22222 33333 33433332 22333322 445566666655332 3456889999999999999988
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 315 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|++.+... ++....+|+.++-.||+++|..
T Consensus 352 i~~~f~~~-------~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 352 IKDFFNGK-------EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred HHHHhCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence 88766321 2333457889999999999764
No 38
>PRK11678 putative chaperone; Provisional
Probab=99.68 E-value=2.4e-16 Score=152.34 Aligned_cols=180 Identities=17% Similarity=0.193 Sum_probs=112.2
Q ss_pred cEEEeCCCCceEEeeeCCCCC--------CCCCCceeEecCCCCc-------------------------------cccC
Q 017089 9 PLVCDNGTGMVKAGFAGDDAP--------RAVFPSIVGRPRHTGV-------------------------------MVGM 49 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P--------~~~~p~~~~~~~~~~~-------------------------------~~~~ 49 (377)
.+.||+||+++-+++..+..| ...+||.++.+..... -...
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 489999999999999865433 3466777765321100 0001
Q ss_pred CCcceeeccchhccc----Ccc----eeec-----cccCCccCCHH-HHHHHHHHhcc---cccccCCCCCcEEEeeCCC
Q 017089 50 GQKDAYVGDEAQSKR----GIL----TLKY-----PIEHGIVSNWD-DMEKIWHHTFY---NELRVAPEEHPVLLTEAPL 112 (377)
Q Consensus 50 ~~~~~~vg~~~~~~~----~~~----~~~~-----p~~~g~i~d~~-~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~ 112 (377)
+.....+|.++.+.. +.- .+++ ++..+.+...+ ....+|+++-. ..++ ..-..+||+.|..
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g--~~v~~~VItvPa~ 159 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQ--AAITQAVIGRPVN 159 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhC--CCCCcEEEEECCc
Confidence 234567888875541 111 1121 23323333333 23444444421 1222 2235799999998
Q ss_pred CC-----HHhHHH--HHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEeeCC----------
Q 017089 113 NP-----KANREK--MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEG---------- 170 (377)
Q Consensus 113 ~~-----~~~~~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~~g---------- 170 (377)
+. ..+|+. .+.-+.+..|++.+.++++|+||+++++. .+.+|+|+|+++++++.+.-+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~ 239 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRS 239 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcc
Confidence 86 556543 24444588999999999999999999873 578999999999999887422
Q ss_pred -cccccceEEecccHHHHHHHHH
Q 017089 171 -YALPHAILRLDLAGRDLTDALM 192 (377)
Q Consensus 171 -~~~~~~~~~~~~GG~~l~~~l~ 192 (377)
.++.++ -..+||.++++.|.
T Consensus 240 ~~vla~~--G~~lGG~DfD~~L~ 260 (450)
T PRK11678 240 ASLLGHS--GQRIGGNDLDIALA 260 (450)
T ss_pred eeEEecC--CCCCChHHHHHHHH
Confidence 122111 13799999999996
No 39
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.5e-16 Score=152.80 Aligned_cols=311 Identities=18% Similarity=0.179 Sum_probs=180.1
Q ss_pred CCCcEEEeCCCCceEEeeeCCC-CCCCCCCceeEecCCCCccccCCCcceeeccchhcc------cCcceeeccccCC--
Q 017089 6 DIQPLVCDNGTGMVKAGFAGDD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPIEHG-- 76 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~-~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~~~g-- 76 (377)
...+|.||+||+++.+++.... .|. ++++..+.+..+.++....+...++|..+.+. ...+.+++.+..+
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~ 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC
Confidence 4568999999999999998755 344 33444433322222222222357888877653 1233444444322
Q ss_pred ----------ccCCH-HHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccc
Q 017089 77 ----------IVSNW-DDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 142 (377)
Q Consensus 77 ----------~i~d~-~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~ 142 (377)
..... +....++.++- ...|+ ..-..+++++|.+++..+|..+.+.+ +..|++.+.++++|+|
T Consensus 83 ~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~~v~~~VItVPayF~d~qR~at~~A~-~iaGl~vlrlinEPtA 159 (579)
T COG0443 83 GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--EKVTDAVITVPAYFNDAQRQATKDAA-RIAGLNVLRLINEPTA 159 (579)
T ss_pred CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--CCcceEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEEecchHH
Confidence 11122 23344444432 12232 23567999999999999998877776 7899999999999999
Q ss_pred cccccCC-----ceEEEEeCCCCceEEEEeeC--Ccc-cccceEEecccHHHHHHHHHHHHHHc----C-CCccchh-H-
Q 017089 143 SLYASGR-----TTGIVLDSGDGVSHTVPIYE--GYA-LPHAILRLDLAGRDLTDALMKILTER----G-YSFTTTA-E- 207 (377)
Q Consensus 143 a~~~~g~-----~~~lVVDiG~~~t~i~~v~~--g~~-~~~~~~~~~~GG~~l~~~l~~~l~~~----~-~~~~~~~-~- 207 (377)
|++++|. .+-+|+|+|+++++++.|-= |.. +........+||++++..|..++..+ + .++.... .
T Consensus 160 AAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~ 239 (579)
T COG0443 160 AALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAAL 239 (579)
T ss_pred HHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHH
Confidence 9999985 47899999999999998754 322 22334466899999999999887643 1 2222211 1
Q ss_pred ---HHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcCCCcEEee--CCccccccccCCCCccCCCcCCChHHHHHH
Q 017089 208 ---REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITI--GAERFRCPEVLFQPSMIGMEAAGIHETTYN 282 (377)
Q Consensus 208 ---~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~i--~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~ 282 (377)
.+.++..|..++.... ....+..-++. +.+ .-.|-.+ |-+..+. ...+.+.+..
T Consensus 240 ~rL~~~ae~aK~~LS~~~~--------------~~i~~~~~~~~-~~~~~~ltR~~~-E~l~~dl-----l~r~~~~~~~ 298 (579)
T COG0443 240 QRLREAAEKAKIELSSATQ--------------TSINLPSIGGD-IDLLKELTRAKF-EELILDL-----LERTIEPVEQ 298 (579)
T ss_pred HHHHHHHHHHHHHcccccc--------------cccchhhcccc-chhhhhhhHHHH-HHHHHHH-----HHHHHHHHHH
Confidence 1345555555543211 11111111111 111 0011111 1111110 0001122222
Q ss_pred HHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 283 SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 283 ~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+++ +..+...-++-|+++||.++||-+.+.+.+.+. . ......+|+.++-.||++.|..
T Consensus 299 al~--~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~----~----~~~~~inpdeava~GAa~qa~~ 357 (579)
T COG0443 299 ALK--DAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG----K----EPEKSINPDEAVALGAAIQAAV 357 (579)
T ss_pred HHH--HcCCChhhCceEEEccceeccHHHHHHHHHHhC----c----cccccCCccHHHHHHHHHHHHh
Confidence 222 222334566779999999999966666655553 1 3344567889999999998875
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.67 E-value=8.7e-17 Score=163.26 Aligned_cols=234 Identities=20% Similarity=0.235 Sum_probs=143.9
Q ss_pred HHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC------ceE
Q 017089 82 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTG 152 (377)
Q Consensus 82 ~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~ 152 (377)
+....+++++.. +.++.. -..+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++. .+.
T Consensus 114 ~~~~~~l~~l~~~a~~~~~~~--~~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~v 190 (602)
T PF00012_consen 114 ELSAMILKYLKEMAEKYLGEK--VTDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTV 190 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHTSB--EEEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEE
T ss_pred cccccchhhhcccchhhcccc--cccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccce
Confidence 445555555531 122221 246999999999999999988887 88999999999999999987753 478
Q ss_pred EEEeCCCCceEEEEee--CCcc-cccceEEecccHHHHHHHHHHHHHHc-----CCCccchh-----HHHHHHHHHHhcc
Q 017089 153 IVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLA 219 (377)
Q Consensus 153 lVVDiG~~~t~i~~v~--~g~~-~~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~ 219 (377)
+|+|+|+++++++.+. +|.. +........+||.++++.|.+++.++ +.+..... -...++..|+.++
T Consensus 191 lv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls 270 (602)
T PF00012_consen 191 LVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLS 270 (602)
T ss_dssp EEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTT
T ss_pred eccccccceEeeeehhcccccccccccccccccccceecceeeccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998774 4432 22233456899999999999988643 22222110 0223455555544
Q ss_pred ceecCHHHHHHHhccCCCcceEEE----cCCCcEEee--CCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHH
Q 017089 220 YIALDYEQELETAKTSSAVEKSYE----LPDGQVITI--GAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIR 292 (377)
Q Consensus 220 ~v~~~~~~~~~~~~~~~~~~~~~~----~p~~~~i~i--~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~ 292 (377)
.. ......+. .+++..+.+ ..+.|. ..+.+++. +.+.|.+++..... .
T Consensus 271 ~~--------------~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~---------~~~~i~~~l~~~~~--~ 325 (602)
T PF00012_consen 271 SN--------------DNTEITISIESLYDDGEDFSITITREEFEELCEPLLER---------IIEPIEKALKDAGL--K 325 (602)
T ss_dssp TS--------------SSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHH---------THHHHHHHHHHTT----
T ss_pred cc--------------cccccccccccccccccccccccccceecccccccccc---------cccccccccccccc--c
Confidence 31 01112221 122443333 333332 22223222 55666666665432 2
Q ss_pred HHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 293 KDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 293 ~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
..-++.|+|+||+|++|-+.+.|++.+. . .+..+.+|..++-.||+++|..
T Consensus 326 ~~~i~~V~lvGG~sr~p~v~~~l~~~f~----~----~~~~~~~p~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 326 KEDIDSVLLVGGSSRIPYVQEALKELFG----K----KISKSVNPDEAVARGAALYAAI 376 (602)
T ss_dssp GGGESEEEEESGGGGSHHHHHHHHHHTT----S----EEB-SS-TTTHHHHHHHHHHHH
T ss_pred ccccceeEEecCcccchhhhhhhhhccc----c----ccccccccccccccccccchhh
Confidence 4456789999999999988777766553 1 3445668899999999999864
No 41
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.62 E-value=1.3e-14 Score=140.25 Aligned_cols=202 Identities=18% Similarity=0.200 Sum_probs=133.9
Q ss_pred CHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHH
Q 017089 114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~ 188 (377)
+....+.+.+ +++..|+....++.+|+|+++++.. ...+|||||+++|+++.+.+|.++ ....+++||++++
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHH
Confidence 3445566666 5588999999999999999998753 358999999999999999999888 6778999999999
Q ss_pred HHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcCC--C-cEEeeCCccccccccCCC
Q 017089 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD--G-QVITIGAERFRCPEVLFQ 265 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~--~-~~i~i~~~~~~~~E~lf~ 265 (377)
+.+...|. ...+.+|++|.+++....+.. .....+.++. + ....++ +....+++..
T Consensus 241 ~dIa~~l~---------i~~~~AE~lK~~~g~~~~~~~----------~~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~ 299 (420)
T PRK09472 241 SDIAYAFG---------TPPSDAEAIKVRHGCALGSIV----------GKDESVEVPSVGGRPPRSLQ--RQTLAEVIEP 299 (420)
T ss_pred HHHHHHhC---------cCHHHHHHHHHhcceeccccC----------CCCceeEecCCCCCCCeEEc--HHHHHHHHHH
Confidence 99987762 135779999998876532210 0011122221 1 111111 1111122111
Q ss_pred CccCCCcCCChHHHHHHHHhcCCHHHHH-----HhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECC------
Q 017089 266 PSMIGMEAAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP------ 334 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~-----~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~------ 334 (377)
. ...+.+.|.+++..++..++. .+.+.|+||||+|+|||+.+.+++.+.. ++++..|
T Consensus 300 r------~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~ 367 (420)
T PRK09472 300 R------YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGL 367 (420)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCC
Confidence 0 111334555555555444432 3556799999999999999999988842 3444332
Q ss_pred ----CCCccccchhhhhhhcc
Q 017089 335 ----PERKYSVWIGGSILASL 351 (377)
Q Consensus 335 ----~~~~~~~w~Gasi~a~l 351 (377)
.+|.|++-.|...|+..
T Consensus 368 ~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 368 TDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred hhhcCCcHHHHHHHHHHHhhh
Confidence 36889999999888764
No 42
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.61 E-value=1.5e-14 Score=137.91 Aligned_cols=181 Identities=17% Similarity=0.226 Sum_probs=117.9
Q ss_pred CHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHH
Q 017089 114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~ 188 (377)
++...+.+.+.+ +.+|+..+.++.+|+|+++++.. ...+|||+|+++|+++.+.+|.+. .....++||++++
T Consensus 156 ~~~~v~~~~~~~-~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~--~~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVKCV-ERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIR--YTKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHHHH-HHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEE--EEeeecchHHHHH
Confidence 556666666655 88999999999999999987642 367999999999999999999876 4567899999999
Q ss_pred HHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcCC---CcEEeeCCcccc-ccccCC
Q 017089 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD---GQVITIGAERFR-CPEVLF 264 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~---~~~i~i~~~~~~-~~E~lf 264 (377)
+.+.+.+. ...+.+|++|.+++....+.. .....+.++. +....++.+.+. +.+..+
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~ 293 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCASIPLE----------GPDENIEIPSVGERPPRSLSRKELAEIIEARA 293 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEecccCC----------CCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence 99987652 135779999999987532210 0011122211 111222211111 111111
Q ss_pred CCccCCCcCCChHHHHH-HHHhcCCHHHHHHhhcC-cccccCCcCCcChHHHHHHHHHhhCCCCceEEEECC
Q 017089 265 QPSMIGMEAAGIHETTY-NSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP 334 (377)
Q Consensus 265 ~p~~~~~~~~~l~~~I~-~~i~~~~~~~~~~l~~n-Iil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~ 334 (377)
+ .+.+.|. +.+.+...+ . -+.+ |+||||+|++||+.+++++.+.. ++++..|
T Consensus 294 ~---------ei~~~i~~~~L~~~~~~--~-~i~~gIvLtGG~S~ipgi~~~l~~~~~~------~vr~~~P 347 (371)
T TIGR01174 294 E---------EILEIVKQKELRKSGFK--E-ELNGGIVLTGGGAQLEGIVELAEKVFDN------PVRIGLP 347 (371)
T ss_pred H---------HHHHHHHHHHHHhcCCc--c-cCCCEEEEeChHHcccCHHHHHHHHhCC------CeEEECC
Confidence 1 1444444 555444322 2 2344 99999999999999999998843 4555543
No 43
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.57 E-value=3.8e-14 Score=133.87 Aligned_cols=201 Identities=19% Similarity=0.259 Sum_probs=134.8
Q ss_pred CHHhHHHHHhhccccCCCCeEEeeecccccccccC-----CceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHH
Q 017089 114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~ 188 (377)
+....++|.+.+ |+.+.....++-+|+|++.+.= .-++++||+|+++|+|+.+.+|.+. +...+|+||+++|
T Consensus 163 ~~~~~~Nl~k~v-~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvgG~~vT 239 (418)
T COG0849 163 PKNILENLEKCV-ERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVGGDHVT 239 (418)
T ss_pred chHHHHHHHHHH-HHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeCccHHH
Confidence 455566666665 8899999999999999987763 3589999999999999999999998 6677999999999
Q ss_pred HHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcCC--CcEEeeCCccccccccCCCC
Q 017089 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD--GQVITIGAERFRCPEVLFQP 266 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~--~~~i~i~~~~~~~~E~lf~p 266 (377)
+.+...|. .+.+.+|++|.+++....+.. .....+++|. +.. ...-.+....++.-.
T Consensus 240 ~DIa~~l~---------t~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~-~~~~t~~~ls~II~a- 298 (418)
T COG0849 240 KDIAKGLK---------TPFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDI-PRQVTRSELSEIIEA- 298 (418)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcc-cchhhHHHHHHHHHh-
Confidence 99998882 256789999999987543321 1112222211 111 000011111111100
Q ss_pred ccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECC----------CC
Q 017089 267 SMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP----------PE 336 (377)
Q Consensus 267 ~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~----------~~ 336 (377)
....+.+++...|++.-.. ..+...|+||||.+++||+.+-.++-+.. ++|+..| .+
T Consensus 299 -----R~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~ 365 (418)
T COG0849 299 -----RVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARN 365 (418)
T ss_pred -----hHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccC
Confidence 0111334445555444222 56778899999999999999877766642 3444443 35
Q ss_pred Cccccchhhhhhhcc
Q 017089 337 RKYSVWIGGSILASL 351 (377)
Q Consensus 337 ~~~~~w~Gasi~a~l 351 (377)
|.|++-.|.-.++..
T Consensus 366 p~fs~avGl~~~~~~ 380 (418)
T COG0849 366 PAFSTAVGLLLYGAL 380 (418)
T ss_pred chhhhhHHHHHHHhh
Confidence 899999999888875
No 44
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.3e-12 Score=113.71 Aligned_cols=215 Identities=19% Similarity=0.229 Sum_probs=127.7
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC------ceEEEEeCCCCceEEEE--eeCCcc-
Q 017089 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVP--IYEGYA- 172 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~~--v~~g~~- 172 (377)
-...++++|.+++..+|+...+. ---.|...+.++++|.+|++++|. .+-+|.|+|+++.+|+. |-+|..
T Consensus 172 v~~AVvTvPAYFNDAQrQATKDA-GtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFe 250 (663)
T KOG0100|consen 172 VTHAVVTVPAYFNDAQRQATKDA-GTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFE 250 (663)
T ss_pred ccceEEecchhcchHHHhhhccc-ceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEE
Confidence 35689999999999999875544 366889999999999999999985 58899999999977764 456643
Q ss_pred cccceEEecccHHHHHHHHHHHHHH-----cCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcCCC
Q 017089 173 LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDG 247 (377)
Q Consensus 173 ~~~~~~~~~~GG~~l~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~ 247 (377)
+.......++||.++++++.+++-+ .|.++.. +...+.++++..- ..+...++......++
T Consensus 251 VlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~k--dnkA~~KLrRe~E---------kAKRaLSsqhq~riEI--- 316 (663)
T KOG0100|consen 251 VLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRK--DNKAVQKLRREVE---------KAKRALSSQHQVRIEI--- 316 (663)
T ss_pred EEecCCCcccCccchHHHHHHHHHHHHhhhcCCccch--hhHHHHHHHHHHH---------HHHhhhccccceEEee---
Confidence 1222335689999999998877642 2333332 4444555544311 1111111111122222
Q ss_pred cEEeeCCccccccccCCCCccCCCc---------CCChHHHHHHHHhcC--CHHHHHHhhcCcccccCCcCCcChHHHHH
Q 017089 248 QVITIGAERFRCPEVLFQPSMIGME---------AAGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 248 ~~i~i~~~~~~~~E~lf~p~~~~~~---------~~~l~~~I~~~i~~~--~~~~~~~l~~nIil~GG~s~i~gl~~rl~ 316 (377)
|.||....++.. ...|-..-+.-+++. +.++++.-++.|||+||+++|| ++|
T Consensus 317 -------------eS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIP----KvQ 379 (663)
T KOG0100|consen 317 -------------ESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIP----KVQ 379 (663)
T ss_pred -------------eeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccCh----hHH
Confidence 444444222110 001111111222222 5567777788999999999999 555
Q ss_pred HHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+-|...+.-...-+ --+|+-++-.||++-|-.
T Consensus 380 qllk~fF~GKepsk---GinPdEAVAYGAAVQaGv 411 (663)
T KOG0100|consen 380 QLLKDFFNGKEPSK---GINPDEAVAYGAAVQAGV 411 (663)
T ss_pred HHHHHHhCCCCccC---CCChHHHHHhhhhhhhcc
Confidence 55555542210111 125677777787776543
No 45
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=7.7e-12 Score=121.92 Aligned_cols=216 Identities=16% Similarity=0.208 Sum_probs=134.0
Q ss_pred CcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC-------ceEEEEeCCCCceEEEEee--CCcc-
Q 017089 103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA- 172 (377)
Q Consensus 103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~i~~v~--~g~~- 172 (377)
..+++++|..++..+|+.+-+.. ..+|++.+.++++|.||++++|. .+-+|.|+|+++.+|+++. +|..
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 45899999999999999877776 77999999999999999999873 4679999999999888774 4422
Q ss_pred cccceEEecccHHHHHHHHHHHHHHc-----CCCccchh----H-HHHHHHHHHhccceecCHHHHHHHhccCCCcceEE
Q 017089 173 LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA----E-REIVRDMKEKLAYIALDYEQELETAKTSSAVEKSY 242 (377)
Q Consensus 173 ~~~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~----~-~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
+.......++||.++++.|.+++... +.+..... . ...+|..|+.+..... .....
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~--------------~~i~v 288 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQ--------------ASIEI 288 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccccc--------------ceecc
Confidence 23333457999999999998887432 11111100 0 1123344443321100 00000
Q ss_pred -EcCCCcEEeeC--Ccccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHH
Q 017089 243 -ELPDGQVITIG--AERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKE 318 (377)
Q Consensus 243 -~~p~~~~i~i~--~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~e 318 (377)
.|-+|..+... ..||. .+.-||.. ..+.+..++...- +-+..++.||||||++++|.+..-+++-
T Consensus 289 dsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~--~dk~~i~~vvlVGGstriPk~~~ll~d~ 357 (620)
T KOG0101|consen 289 DSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAK--LDKSDIDEVVLVGGSTRIPKVQKLLEDF 357 (620)
T ss_pred chhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhc--cCccCCceeEEecCcccchHHHHHHHHH
Confidence 12233333222 22222 22334332 3444444554332 2344567899999999999777666655
Q ss_pred HHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 319 ITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 319 L~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.. -++..+-+|+.++-.||++.|..
T Consensus 358 f~~-------k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 358 FNG-------KELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred hcc-------cccccCCCHHHHHHhhHHHHhhh
Confidence 522 12334457899999999999886
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.27 E-value=1.7e-10 Score=109.22 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=107.1
Q ss_pred CHHhHHHHHhhccccCCCCeEEeeeccccccccc----------C-Cc-eEEEEeCCCCceEEEEeeCCcccccceEEec
Q 017089 114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS----------G-RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g-~~-~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~ 181 (377)
++...+.+.+.+ +.+|+.-..+..+++|.+-+. . .. +.++||+|+++|+++.+.+|.++ ....++
T Consensus 141 ~~~~v~~~~~~~-~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHAL-KLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREVP 217 (348)
T ss_pred cHHHHHHHHHHH-HHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEee
Confidence 677778877775 889999888888888764322 1 22 48999999999999999999988 778899
Q ss_pred ccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCcceEEEcCCCcEEeeCCccccccc
Q 017089 182 LAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPE 261 (377)
Q Consensus 182 ~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~i~~~~~~~~E 261 (377)
+||.++++.+.+.+ +. +.+.++++|.+.+.... ...+ ..+
T Consensus 218 ~G~~~i~~~i~~~~---~~------~~~~Ae~~k~~~~~~~~-~~~~------------------------------~~~ 257 (348)
T TIGR01175 218 FGTRQLTSELSRAY---GL------NPEEAGEAKQQGGLPLL-YDPE------------------------------VLR 257 (348)
T ss_pred chHHHHHHHHHHHc---CC------CHHHHHHHHhcCCCCCc-hhHH------------------------------HHH
Confidence 99999999998665 22 34668888887653211 0000 000
Q ss_pred cCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHH
Q 017089 262 VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT 320 (377)
Q Consensus 262 ~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~ 320 (377)
..++ .+..-|.+++.-+-........+.|+||||++.++||.+.|+++|.
T Consensus 258 ~~~~---------~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 258 RFKG---------ELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHH---------HHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 0111 1444455555433211222346789999999999999999999994
No 47
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.25 E-value=1.9e-10 Score=108.15 Aligned_cols=185 Identities=14% Similarity=0.148 Sum_probs=107.5
Q ss_pred CcEEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCC-------------ccccCCCcc---eeeccchhcccCcceeec
Q 017089 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-------------VMVGMGQKD---AYVGDEAQSKRGILTLKY 71 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~-------------~~~~~~~~~---~~vg~~~~~~~~~~~~~~ 71 (377)
.++.||+|-.+||+-.... ...+|+.++...... ..+..++.. +++|+++...... ...
T Consensus 3 ~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~--~~~ 77 (344)
T PRK13917 3 YVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNT--GKD 77 (344)
T ss_pred eEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccc--cCC
Confidence 4899999999999866421 124466554322111 111122333 7788775332110 001
Q ss_pred ccc-CCccCCHHHHHHHHHHhcccccccC--CCCCcEEE--eeCCCCCHHh-HHHHHhhcccc-----------CCCCeE
Q 017089 72 PIE-HGIVSNWDDMEKIWHHTFYNELRVA--PEEHPVLL--TEAPLNPKAN-REKMTQIMFET-----------FNTPAM 134 (377)
Q Consensus 72 p~~-~g~i~d~~~~~~~~~~~~~~~L~~~--~~~~~vvl--~~~~~~~~~~-~~~l~~~lfe~-----------~~~~~v 134 (377)
+.. ++.. .-+..+.++..++...+... .+...++| -.|...-... ++.+.+.+-.. ..+..|
T Consensus 78 ~~~~~~~y-~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V 156 (344)
T PRK13917 78 TYSTNDRY-DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGV 156 (344)
T ss_pred cccccccc-cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEE
Confidence 110 1111 12356666666642222221 12223333 4555442222 34555443221 346678
Q ss_pred EeeecccccccccCC-------------ceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHc
Q 017089 135 YVAIQAVLSLYASGR-------------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 198 (377)
Q Consensus 135 ~~~~~~~~a~~~~g~-------------~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 198 (377)
.++++|++|.+.... ...+|||||+.+|+++.+.++.+........+.|..++.+.+.+.+..+
T Consensus 157 ~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 233 (344)
T PRK13917 157 KVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK 233 (344)
T ss_pred EEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence 999999988764421 3569999999999999999999987777779999999999999999543
No 48
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=6.2e-11 Score=115.49 Aligned_cols=219 Identities=16% Similarity=0.180 Sum_probs=129.2
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC----------ceEEEEeCCCCceEEEEeeCCc
Q 017089 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~i~~v~~g~ 171 (377)
-..+++++|+++.+.+|+.+++.+ .-+|...++++++..++|+.+|. +.-++.|+|+++|+++.|..-.
T Consensus 158 Ikd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~ 236 (902)
T KOG0104|consen 158 IKDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQL 236 (902)
T ss_pred hhheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEe
Confidence 456999999999999999999998 88999999999999999999874 4679999999999999885322
Q ss_pred cccc-------------ceEEecccHHHHHHHHHHHHHHcCC-------Cccchh-----HHHHHHHHHHhccceecCHH
Q 017089 172 ALPH-------------AILRLDLAGRDLTDALMKILTERGY-------SFTTTA-----EREIVRDMKEKLAYIALDYE 226 (377)
Q Consensus 172 ~~~~-------------~~~~~~~GG~~l~~~l~~~l~~~~~-------~~~~~~-----~~~~~~~ik~~~~~v~~~~~ 226 (377)
+-.. ..-...+||..++..|..+|...-. +..+.. -...++++|.=++.-+ +.-
T Consensus 237 v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANs-ea~ 315 (902)
T KOG0104|consen 237 VKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANS-EAF 315 (902)
T ss_pred eccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcch-hhH
Confidence 1111 1113378999999999999864311 111100 0223444444332110 000
Q ss_pred HHHHHhccCCCcceEEEcCCCcEEeeCCcccc-ccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCC
Q 017089 227 QELETAKTSSAVEKSYELPDGQVITIGAERFR-CPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGS 305 (377)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~p~~~~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~ 305 (377)
..++.+- ....|.+ .|..+.|. .++=|+. .+.+-|.+++.+... --.-++.|||.||+
T Consensus 316 aqIEsL~----ddiDFr~------kvTRe~fEelc~Dl~~---------r~~~Pi~dAl~~a~l--~ldeIn~ViL~Gg~ 374 (902)
T KOG0104|consen 316 AQIESLI----DDIDFRL------KVTREEFEELCADLEE---------RIVEPINDALKKAQL--SLDEINQVILFGGA 374 (902)
T ss_pred HHHHHHh----hcccccc------ceeHHHHHHHHHHHHH---------hhhhhHHHHHHhcCC--ChhhhheeEEecCc
Confidence 0111110 1122222 12222221 1222221 244555555554321 11245789999999
Q ss_pred cCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017089 306 TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 306 s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
|++|-+.+-|++-+... ++...-+.+-++-.||...|.
T Consensus 375 TRVP~VQe~l~k~v~~~-------ei~knlNaDEA~vmGav~~aA 412 (902)
T KOG0104|consen 375 TRVPKVQETLIKAVGKE-------ELGKNLNADEAAVMGAVYQAA 412 (902)
T ss_pred ccCchHHHHHHHHHhHH-------HHhcccChhHHHHHHHHHHHH
Confidence 99997777766555422 122222446677777766654
No 49
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.19 E-value=3.6e-10 Score=105.48 Aligned_cols=183 Identities=12% Similarity=0.059 Sum_probs=114.9
Q ss_pred EeCCCCceEEeeeCC-CCC-CCCCCceeEecCCCC------------ccccCCCcceeeccchhcccCcceeeccccCCc
Q 017089 12 CDNGTGMVKAGFAGD-DAP-RAVFPSIVGRPRHTG------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 77 (377)
Q Consensus 12 iD~Gs~~~k~G~~~~-~~P-~~~~p~~~~~~~~~~------------~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~ 77 (377)
||+|-.++|+-+... ..+ ...+||.++...... .....++..++||+.+...... ...+-+.+..
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~-~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADT-NRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccC-ccceeccccc
Confidence 899999999876532 232 246777764422111 1112345677888776332110 0111122222
Q ss_pred cCCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhcccc--------CCCCeEEeeeccccccccc--
Q 017089 78 VSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET--------FNTPAMYVAIQAVLSLYAS-- 147 (377)
Q Consensus 78 i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~--------~~~~~v~~~~~~~~a~~~~-- 147 (377)
..+ +....++.+++.. ... .....+++-.|...-..+++.+.+.+-.. ..+..|.++|+|+.|.+..
T Consensus 81 ~~~-~~~~~L~~~Al~~-~~~-~~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 TET-PEYMALLRGALAL-SKV-REIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred cCC-HHHHHHHHHHHHH-hcC-CCCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 222 3455555555522 222 12224666677776667778887776432 4678899999999886643
Q ss_pred -------CCceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHc
Q 017089 148 -------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 198 (377)
Q Consensus 148 -------g~~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 198 (377)
...+.+|||+|+.+|+++.+.++.+......+.+.|...+.+.+.+.+.++
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 234679999999999999888888877666678999999999999998654
No 50
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.17 E-value=6.2e-10 Score=104.91 Aligned_cols=185 Identities=21% Similarity=0.297 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHhcccccccCCCC-----------------CcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccc
Q 017089 80 NWDDMEKIWHHTFYNELRVAPEE-----------------HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 142 (377)
Q Consensus 80 d~~~~~~~~~~~~~~~L~~~~~~-----------------~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~ 142 (377)
+.+.++..+++=..+.+..+.++ ..|+++. .++...+.+++++ +.+|..-..+=-++.|
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A---a~k~~v~~~~~~~-~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA---APKEIVESYVELF-EEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEE---EEHHHHHHHHHHH-HHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEE---EcHHHHHHHHHHH-HHcCCceEEEeehHHH
Confidence 44667777776655666554322 2344442 2566777777665 7788876555444433
Q ss_pred --ccccc---------CCceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHH
Q 017089 143 --SLYAS---------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIV 211 (377)
Q Consensus 143 --a~~~~---------g~~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~ 211 (377)
-++.. ...+.++||||++.|.++.+.+|.++ ..+.+++||+++++.+.+.+ ..+.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~---------~i~~~~A 230 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIAREL---------GIDFEEA 230 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHT---------T--HHHH
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhc---------CCCHHHH
Confidence 33332 12356999999999999999999998 77889999999999998776 1245667
Q ss_pred HHHHHhccceecCHHHHHHHhccCCCcceEEEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHH
Q 017089 212 RDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDI 291 (377)
Q Consensus 212 ~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~ 291 (377)
+.+|.+... +.+...+ +-+.+++. |.+-|.++++-+-...
T Consensus 231 e~~k~~~~l-~~~~~~~------------------------------~l~~~~~~---------l~~EI~rsl~~y~~~~ 270 (340)
T PF11104_consen 231 EELKRSGGL-PEEYDQD------------------------------ALRPFLEE---------LAREIRRSLDFYQSQS 270 (340)
T ss_dssp HHHHHHT-------HHH------------------------------HHHHHHHH---------HHHHHHHHHHHHHHH-
T ss_pred HHHHhcCCC-CcchHHH------------------------------HHHHHHHH---------HHHHHHHHHHHHHhcC
Confidence 777765432 1111000 00111111 5566666666544444
Q ss_pred HHHhhcCcccccCCcCCcChHHHHHHHH
Q 017089 292 RKDLYGNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 292 ~~~l~~nIil~GG~s~i~gl~~rl~~eL 319 (377)
...-++.|+||||+|+++||.+.|+++|
T Consensus 271 ~~~~i~~I~L~Ggga~l~gL~~~l~~~l 298 (340)
T PF11104_consen 271 GGESIERIYLSGGGARLPGLAEYLSEEL 298 (340)
T ss_dssp -----SEEEEESGGGGSTTHHHHHHHHH
T ss_pred CCCCCCEEEEECCccchhhHHHHHHHHH
Confidence 4556788999999999999999999999
No 51
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.13 E-value=1.2e-11 Score=102.42 Aligned_cols=237 Identities=18% Similarity=0.187 Sum_probs=148.0
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCC-CCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccCCHH
Q 017089 4 TEDIQPLVCDNGTGMVKAGFAGDD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~-~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~ 82 (377)
+++.-.|.+|+|+..+..-.-..+ .|-.. .++.-+-+++|.+.|+-
T Consensus 26 d~sk~~vGVDLGT~~iV~~vlD~d~~Pvag---------------------------------~~~~advVRDGiVvdf~ 72 (277)
T COG4820 26 DESKLWVGVDLGTCDIVSMVLDRDGQPVAG---------------------------------CLDWADVVRDGIVVDFF 72 (277)
T ss_pred ccCceEEEeecccceEEEEEEcCCCCeEEE---------------------------------EehhhhhhccceEEehh
Confidence 444667899999999886544322 34211 01112334677777753
Q ss_pred ----HHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCC
Q 017089 83 ----DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 158 (377)
Q Consensus 83 ----~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG 158 (377)
.++++.+.+ .+.|++... ..--..||-......+....+ +|..|....+.+++|.|+++-.+.+++-|||+|
T Consensus 73 eaveiVrrlkd~l-Ek~lGi~~t--ha~taiPPGt~~~~~ri~iNV-iESAGlevl~vlDEPTAaa~vL~l~dg~VVDiG 148 (277)
T COG4820 73 EAVEIVRRLKDTL-EKQLGIRFT--HAATAIPPGTEQGDPRISINV-IESAGLEVLHVLDEPTAAADVLQLDDGGVVDIG 148 (277)
T ss_pred hHHHHHHHHHHHH-HHhhCeEee--eccccCCCCccCCCceEEEEe-ecccCceeeeecCCchhHHHHhccCCCcEEEeC
Confidence 334444444 466766532 222333444433333333333 499999999999999999999999999999999
Q ss_pred CCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHHhccCCCc
Q 017089 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAV 238 (377)
Q Consensus 159 ~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
+++|-|+.+-+|.++ .....+.||.+++--|.- .+++ +.+.+|++|+..-.-
T Consensus 149 GGTTGIsi~kkGkVi--y~ADEpTGGtHmtLvlAG---~ygi------~~EeAE~~Kr~~k~~----------------- 200 (277)
T COG4820 149 GGTTGISIVKKGKVI--YSADEPTGGTHMTLVLAG---NYGI------SLEEAEQYKRGHKKG----------------- 200 (277)
T ss_pred CCcceeEEEEcCcEE--EeccCCCCceeEEEEEec---ccCc------CHhHHHHhhhccccc-----------------
Confidence 999999999999998 445678899887655431 1222 345677777643110
Q ss_pred ceEEEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHH
Q 017089 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKE 318 (377)
Q Consensus 239 ~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~e 318 (377)
+ |-|-.-...++ .+.+.+.+-|...++ ..+.|+||.+..||+++-++++
T Consensus 201 ---------~------Eif~~v~PV~e---------KMAeIv~~hie~~~i-------~dl~lvGGac~~~g~e~~Fe~~ 249 (277)
T COG4820 201 ---------E------EIFPVVKPVYE---------KMAEIVARHIEGQGI-------TDLWLVGGACMQPGVEELFEKQ 249 (277)
T ss_pred ---------h------hcccchhHHHH---------HHHHHHHHHhccCCC-------cceEEecccccCccHHHHHHHH
Confidence 0 00100011111 155666666665554 4689999999999999999999
Q ss_pred HHhhCCCCceEEEECCCCCccccchh
Q 017089 319 ITALAPSSMKIKVVAPPERKYSVWIG 344 (377)
Q Consensus 319 L~~~~~~~~~v~v~~~~~~~~~~w~G 344 (377)
| ...|+.|..|.|-.=+|
T Consensus 250 l--------~l~v~~P~~p~y~TPLg 267 (277)
T COG4820 250 L--------ALQVHLPQHPLYMTPLG 267 (277)
T ss_pred h--------ccccccCCCcceechhh
Confidence 8 23555554454444344
No 52
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2e-09 Score=104.67 Aligned_cols=232 Identities=13% Similarity=0.149 Sum_probs=139.1
Q ss_pred CCCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCC------------ceEEEEeCCCCceEEEEee
Q 017089 101 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPIY 168 (377)
Q Consensus 101 ~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~i~~v~ 168 (377)
.-..++|.+|.++...+|..+++++ ...|+.-+.++++..|+++++|. .+...||+||+.++++...
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 3467999999999999999999998 88999999999999999999984 3588999999998877553
Q ss_pred --CCccc-ccceEEecccHHHHHHHHHHHHHHc---CCCccc--hhH-----HHHHHHHHHhccceecCHHHHHHHhccC
Q 017089 169 --EGYAL-PHAILRLDLAGRDLTDALMKILTER---GYSFTT--TAE-----REIVRDMKEKLAYIALDYEQELETAKTS 235 (377)
Q Consensus 169 --~g~~~-~~~~~~~~~GG~~l~~~l~~~l~~~---~~~~~~--~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 235 (377)
.|..- ..+...-.+||+++++.|.+++... .+.+.- ... ...++++|+.+..- .
T Consensus 215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN-~------------ 281 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSAN-T------------ 281 (727)
T ss_pred eccCcceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcC-c------------
Confidence 44322 2222344899999999999998653 222211 111 23456666655421 0
Q ss_pred CCcceEEEc---CCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHH---------HHHhhcCccccc
Q 017089 236 SAVEKSYEL---PDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDI---------RKDLYGNIVLSG 303 (377)
Q Consensus 236 ~~~~~~~~~---p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~---------~~~l~~nIil~G 303 (377)
..+..+ =+...+.-.-.|-. .-+++...+.++...+ ...-++-|=++|
T Consensus 282 ---~~plNIEcfM~d~dvs~~i~ReE-----------------fEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVG 341 (727)
T KOG0103|consen 282 ---ELPLNIECFMNDKDVSSKIKREE-----------------FEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVG 341 (727)
T ss_pred ---CCCcchhheeecchhhhhccHHH-----------------HHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEec
Confidence 000100 00000000001111 1122222222222211 222334688999
Q ss_pred CCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhccc--ccccccccHHHHhhcCCccccc
Q 017089 304 GSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLS--TFQQMWIAKAEYDESGPSIVHR 374 (377)
Q Consensus 304 G~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~--~~~~~~itr~~y~e~G~~~~~~ 374 (377)
|+|+||-+++.|.+-...-+. . .-+.+.++-+|+++-...- .|.-.|.+.+|-..+-.++-|+
T Consensus 342 g~sripaike~Is~~Fgke~s----~----TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~pysIs~~w~ 406 (727)
T KOG0103|consen 342 GLSRIPAIKEMISDFFGKELS----R----TLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYSISLRWV 406 (727)
T ss_pred CcccchHHHHHHHHHhCCccc----c----cccHHHHHHHhHHHHHHhcCccccceecceecccceeEEEEec
Confidence 999999888888764433221 1 2244677888887776643 4666666666655555544443
No 53
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=3.7e-08 Score=88.45 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=82.1
Q ss_pred EEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhccceecCHHHHHHH
Q 017089 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET 231 (377)
Q Consensus 152 ~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~ 231 (377)
..|+|||++.|.++.+.+|+++ ..+..++||+++++.+.+.. ..+...++++|...... .++..+.-.
T Consensus 195 vav~~Igat~s~l~vi~~gk~l--y~r~~~~g~~Qlt~~i~r~~---------~L~~~~a~~~k~~~~~P-~~y~~~vl~ 262 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKIL--YTREVPVGTDQLTQEIQRAY---------SLTEEKAEEIKRGGTLP-TDYGSEVLR 262 (354)
T ss_pred heeeeecccceEEEEEECCeee--eEeeccCcHHHHHHHHHHHh---------CCChhHhHHHHhCCCCC-CchhHHHHH
Confidence 4699999999999999999999 77889999999999988666 11345577777765532 232221100
Q ss_pred hccCCCcceEEEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcCh
Q 017089 232 AKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 311 (377)
Q Consensus 232 ~~~~~~~~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl 311 (377)
| ....|.+-|.++|+-+-.----.-+..|+|.||++.+.|+
T Consensus 263 ----------------------------------~-----f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL 303 (354)
T COG4972 263 ----------------------------------P-----FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGL 303 (354)
T ss_pred ----------------------------------H-----HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhH
Confidence 0 0112566666677643111122345689999999999999
Q ss_pred HHHHHHHHH
Q 017089 312 ADRMSKEIT 320 (377)
Q Consensus 312 ~~rl~~eL~ 320 (377)
.+.+++.|.
T Consensus 304 ~~~i~qrl~ 312 (354)
T COG4972 304 AAAIQQRLS 312 (354)
T ss_pred HHHHHHHhC
Confidence 999999984
No 54
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=5.9e-07 Score=85.42 Aligned_cols=211 Identities=18% Similarity=0.260 Sum_probs=127.9
Q ss_pred CcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecccccccccCCc-----eEEEEeCCCCceEEEE--eeCCcccc-
Q 017089 103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVP--IYEGYALP- 174 (377)
Q Consensus 103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~i~~--v~~g~~~~- 174 (377)
...++++|.+++..+|+..-... .-+|...+..+++|.+|++++|.. .-.|.|+|+++.+|+. |.+|.-..
T Consensus 161 ~~avvtvpAyfndsqRqaTkdag-~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDAG-QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhhh-hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 45899999999999998765554 789999999999999999999863 5689999999977764 46775432
Q ss_pred cceEEecccHHHHHHHHHHHHHHc-----CCCccchhHHHHHHHHHH-------hccceecCHHHHHHHhccCCCcceEE
Q 017089 175 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTAEREIVRDMKE-------KLAYIALDYEQELETAKTSSAVEKSY 242 (377)
Q Consensus 175 ~~~~~~~~GG~~l~~~l~~~l~~~-----~~~~~~~~~~~~~~~ik~-------~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
........||.+++..+..++-.. ++++. .+...+..+++ .++... ......+|
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~--kd~~a~qrl~eaaEkaKielSs~~------------~tei~lp~ 305 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLT--KDRMALQRLREAAEKAKIELSSRQ------------QTEINLPF 305 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchh--hhHHHHHHHHHHHHhhhhhhhhcc------------cceeccce
Confidence 233456789999999998877432 32222 23333333332 222110 01112233
Q ss_pred EcCCC---cEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHH-----HhhcCcccccCCcCCcChHHH
Q 017089 243 ELPDG---QVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADR 314 (377)
Q Consensus 243 ~~p~~---~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~-----~l~~nIil~GG~s~i~gl~~r 314 (377)
.-.|. .-+.+...|-.+.|+ +..+|.+.|.-|..++|. .-++.|+++||.+++|-..+.
T Consensus 306 iTada~gpkh~~i~~tr~efe~~-------------v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~ 372 (640)
T KOG0102|consen 306 ITADASGPKHLNIELTRGEFEEL-------------VPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQST 372 (640)
T ss_pred eeccCCCCeeEEEeecHHHHHHh-------------hHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHH
Confidence 32232 333444444444333 455666666655444443 455679999999999965555
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017089 315 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
++ |+-..-|.. .-+|+-++-.||++-+
T Consensus 373 V~-e~fgk~p~~-------~vnPdeava~GAaiqg 399 (640)
T KOG0102|consen 373 VK-ELFGKGPSK-------GVNPDEAVAGGAAIQG 399 (640)
T ss_pred HH-HHhCCCCCC-------CcCCcchhccchhhcc
Confidence 54 232222221 1245556666655543
No 55
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.43 E-value=6.9e-07 Score=83.31 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=50.6
Q ss_pred cCCCCeEEeeeccccccccc-----CCceEEEEeCCCCceEEEEeeCCcccc-cceEEecccHHHHHHHHHHHHHH
Q 017089 128 TFNTPAMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALP-HAILRLDLAGRDLTDALMKILTE 197 (377)
Q Consensus 128 ~~~~~~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~i~~v~~g~~~~-~~~~~~~~GG~~l~~~l~~~l~~ 197 (377)
.+.+..|.+.|++++|.|.. .....+|||||+.+|+++.|.++.... .+....++|-..+.+.+.+.|..
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 34477999999999998764 236789999999999999998765443 33345688999999999988855
No 56
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.28 E-value=3.1e-06 Score=80.58 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=100.0
Q ss_pred CCCCCCCCcEEEeCCCCceEEeeeC----CCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCC
Q 017089 1 MADTEDIQPLVCDNGTGMVKAGFAG----DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHG 76 (377)
Q Consensus 1 ~~~~~~~~~vviD~Gs~~~k~G~~~----~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g 76 (377)
||+ ++-..|.||+||+||.+=|+. +..+....|.+.- +..+..-+.. -...|+...
T Consensus 1 ~~~-~~i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I-----------------~dkev~yrS~--i~fTPl~~~ 60 (475)
T PRK10719 1 MMT-EELLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEI-----------------IDKEIIYRSP--IYFTPLLKQ 60 (475)
T ss_pred CCc-cEEEEEEEeccCceEEEEEEEEEEecccccccCceEEE-----------------eeeEEEEecC--ceecCCCCC
Confidence 454 667789999999999998873 2223233332211 1111111111 135688888
Q ss_pred ccCCHHHHHHHHHHhcccccccCCC--CCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEee-----------eccccc
Q 017089 77 IVSNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVA-----------IQAVLS 143 (377)
Q Consensus 77 ~i~d~~~~~~~~~~~~~~~L~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~-----------~~~~~a 143 (377)
...|-++++.+++.-| +.-++.++ +..+.++.-.....++.++.++. ++...=-|+ -.++++
T Consensus 61 ~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~----~~~~~gdfVVA~AG~~le~iva~~AS 135 (475)
T PRK10719 61 GEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMA----LSGSAGDFVVATAGPDLESIIAGKGA 135 (475)
T ss_pred ccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHH----hcccccceeeeccCccHHHhhhHHHh
Confidence 8889999999999887 66777654 34455554444444444444443 221111111 113333
Q ss_pred cccc----CCceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHHH
Q 017089 144 LYAS----GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 144 ~~~~----g~~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~ 190 (377)
+.+. .....++||||+++|+++.+.+|.++ +...+++||++++..
T Consensus 136 g~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~--~T~~l~vGG~~IT~D 184 (475)
T PRK10719 136 GAQTLSEERNTRVLNIDIGGGTANYALFDAGKVI--DTACLNVGGRLIETD 184 (475)
T ss_pred hHHHhhhhccCceEEEEeCCCceEEEEEECCEEE--EEEEEecccceEEEC
Confidence 2221 12578999999999999999999988 667799999987765
No 57
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.27 E-value=2.3e-05 Score=70.47 Aligned_cols=43 Identities=30% Similarity=0.611 Sum_probs=35.9
Q ss_pred CcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhh
Q 017089 298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 298 nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
.|+++||.++.+++.+.+.+.| ...+..++++.+..-+||+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~l--------g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKL--------GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHh--------CCcEEcCCCccHHHHHHHHhC
Confidence 7999999999999999999888 235666777888888898764
No 58
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.06 E-value=1e-05 Score=73.12 Aligned_cols=48 Identities=17% Similarity=0.375 Sum_probs=39.6
Q ss_pred hhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEE-CCCCCccccchhhhhhhc
Q 017089 295 LYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV-APPERKYSVWIGGSILAS 350 (377)
Q Consensus 295 l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~-~~~~~~~~~w~Gasi~a~ 350 (377)
+-..|+++||.++-+|+.+.|++.|.. ++. .+++|++..-+||+++|.
T Consensus 239 i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 239 VEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence 446799999999999999999998832 333 366789999999999984
No 59
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.04 E-value=6.2e-05 Score=69.34 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=40.7
Q ss_pred cccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 299 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 299 Iil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
||++||.++..++.+.+.+.| ..+|+.||++++.--.||+++|+-
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHhh
Confidence 999999999999999999888 457888999999999999998864
No 60
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.98 E-value=1.3e-05 Score=75.34 Aligned_cols=47 Identities=28% Similarity=0.545 Sum_probs=40.5
Q ss_pred hcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017089 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 296 ~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
-+.|+++||.++.+|+.+.|++.|. .+++-|++|++..-+||+++|+
T Consensus 356 ~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 356 REPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 3459999999999999999998883 3566688999999999999985
No 61
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.92 E-value=3.5e-05 Score=68.80 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=41.0
Q ss_pred cCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017089 297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 297 ~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
.+|+++||.++-+++.+.|+++|... ...+.+..+++|++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 36999999999999999999999543 124556667889999999999875
No 62
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.58 E-value=0.00026 Score=67.70 Aligned_cols=174 Identities=17% Similarity=0.248 Sum_probs=110.4
Q ss_pred CCcEEEeCCCCceEEeeeC----CCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccCCHH
Q 017089 7 IQPLVCDNGTGMVKAGFAG----DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~----~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~ 82 (377)
...|.||+||+||.+=|+. +..+....|...- ++.+..-+.. -...|+......|-+
T Consensus 3 i~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I-----------------~dkeViYrS~--I~fTPl~~~~~ID~~ 63 (473)
T PF06277_consen 3 ILSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEI-----------------VDKEVIYRSP--IYFTPLLSQTEIDAE 63 (473)
T ss_pred eEEEEEeecCCceeEEEEEeEEEeccCCCccceEEE-----------------eccEEEecCC--ccccCCCCCCccCHH
Confidence 4579999999999998874 2223333333321 1111111111 134688888888999
Q ss_pred HHHHHHHHhcccccccCCC--CCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEe---eecccccccccCC--------
Q 017089 83 DMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV---AIQAVLSLYASGR-------- 149 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g~-------- 149 (377)
+++++++.-| +.-++.++ +.-.|++.---..+++-+.+++.|-+.+|==.|.- --+++.|..++|.
T Consensus 64 al~~iv~~eY-~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~ 142 (473)
T PF06277_consen 64 ALKEIVEEEY-RKAGITPEDIDTGAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHH 142 (473)
T ss_pred HHHHHHHHHH-HHcCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhC
Confidence 9999999997 77777765 34444444444456666666766655554211111 1256667777663
Q ss_pred ceEEEEeCCCCceEEEEeeCCcccccceEEecccHH-----------HHHHHHHHHHHHcCCCc
Q 017089 150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR-----------DLTDALMKILTERGYSF 202 (377)
Q Consensus 150 ~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~-----------~l~~~l~~~l~~~~~~~ 202 (377)
...+=+|||+++|.++.+.+|.++ ...-+++||+ .+...++.++.+.+.++
T Consensus 143 ~~V~NiDIGGGTtN~avf~~G~v~--~T~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 143 TVVANIDIGGGTTNIAVFDNGEVI--DTACLDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred CeEEEEEeCCCceeEEEEECCEEE--EEEEEeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 355668999999999999999999 5566899996 33445556666555543
No 63
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.18 E-value=0.0039 Score=58.53 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=42.8
Q ss_pred hhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017089 295 LYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 295 l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
+-..|+++||.++-+++.+.|++.|....+ ..+|+.+++|++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 346799999999999999999999965432 2466678899999999999875
No 64
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.88 E-value=0.02 Score=56.78 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=53.4
Q ss_pred EEeeCCCCCHHhHHHHHhhccccCCCCeEEeee---ccccccccc-----CCceEEEEeCCCCceEEEEeeCCcccccce
Q 017089 106 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAI---QAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHAI 177 (377)
Q Consensus 106 vl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~-----g~~~~lVVDiG~~~t~i~~v~~g~~~~~~~ 177 (377)
++.....-...+++.+++.+.+..|++- .+++ ++.++.++. ...+++|+|||+++|.++.+-+|.+. ..
T Consensus 81 ~vATsAvReA~N~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~ 157 (496)
T PRK11031 81 VVATATLRLAVNADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SL 157 (496)
T ss_pred EEEeHHHHcCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--ee
Confidence 3333444456677778877777777652 2222 222222111 12358999999999999999888877 56
Q ss_pred EEecccHHHHHHH
Q 017089 178 LRLDLAGRDLTDA 190 (377)
Q Consensus 178 ~~~~~GG~~l~~~ 190 (377)
..+|+|.-.+++.
T Consensus 158 ~Sl~lG~vrl~e~ 170 (496)
T PRK11031 158 FSLSMGCVTWLER 170 (496)
T ss_pred eEEeccchHHHHH
Confidence 7899998765544
No 65
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.78 E-value=0.028 Score=52.08 Aligned_cols=83 Identities=17% Similarity=0.116 Sum_probs=54.8
Q ss_pred EEeeCCCCCHHhHHHHHhhccccCCCCeEEeeeccccccc---c----cCCceEEEEeCCCCceEEEEeeCCcccccceE
Q 017089 106 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY---A----SGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178 (377)
Q Consensus 106 vl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~---~----~g~~~~lVVDiG~~~t~i~~v~~g~~~~~~~~ 178 (377)
++....+-...+++.+++.+.+..|++ +.++...-=|.| + ....+++|+|+|+++|.++.+.+|.+. ...
T Consensus 75 ~vaTsa~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~ 151 (300)
T TIGR03706 75 AVATAALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGV 151 (300)
T ss_pred EEEcHHHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEE
Confidence 333344445567777887777767754 334443222222 1 122457999999999999999888876 667
Q ss_pred EecccHHHHHHHH
Q 017089 179 RLDLAGRDLTDAL 191 (377)
Q Consensus 179 ~~~~GG~~l~~~l 191 (377)
.+|+|.-.+++.+
T Consensus 152 Sl~lG~vrl~e~f 164 (300)
T TIGR03706 152 SLPLGCVRLTEQF 164 (300)
T ss_pred EEccceEEhHHhh
Confidence 8999987777665
No 66
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.75 E-value=0.0057 Score=55.74 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=35.3
Q ss_pred cccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017089 299 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 299 Iil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|+++||..+-+.+.+.|++.|.+..+.. .+..+.+|.+.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999999998877777766666555442 23344567999999999886
No 67
>PRK13317 pantothenate kinase; Provisional
Probab=95.57 E-value=0.09 Score=47.92 Aligned_cols=71 Identities=21% Similarity=0.184 Sum_probs=48.8
Q ss_pred ChHHHHHHHHhcCCHH-HHHHhhcCccccc-CCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017089 275 GIHETTYNSIMKCDVD-IRKDLYGNIVLSG-GSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 275 ~l~~~I~~~i~~~~~~-~~~~l~~nIil~G-G~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+|..+|.+.|..+-.- .|..-.++|+++| |.++.|++.+.|.+.++-. ..++.-+++|++..-+||++++.
T Consensus 201 sl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-----~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 201 GVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLR-----NCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcC-----CceEEecCCCchhHHHHHHHHhh
Confidence 4444444444433211 1333447999999 7999999999999877421 34666688899999999998875
No 68
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=95.52 E-value=0.013 Score=52.17 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=63.4
Q ss_pred CHHhHHHHHhhccccCCCCeEEeeecccccccccCC-----ceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHH
Q 017089 114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~ 188 (377)
.+-.-+.+.+.+-++++++.-.---++-+|..+.-. .---|+|+|+++|+.+.|-....+ ....+.=.|+.++
T Consensus 93 ~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v--~~iHlAGAG~mVT 170 (332)
T PF08841_consen 93 DKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV--TAIHLAGAGNMVT 170 (332)
T ss_dssp SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E--EEEEEE-SHHHHH
T ss_pred ccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE--EEEEecCCchhhH
Confidence 334446677777788999888777888888776533 235788999999999888654444 3345566788888
Q ss_pred HHHHHHHHHcCCCccchhHHHHHHHHHHh
Q 017089 189 DALMKILTERGYSFTTTAEREIVRDMKEK 217 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~ 217 (377)
-.+..-| |. .+.+.+|+||+.
T Consensus 171 mlI~sEL---Gl-----~d~~lAE~IKky 191 (332)
T PF08841_consen 171 MLINSEL---GL-----EDRELAEDIKKY 191 (332)
T ss_dssp HHHHHHC---T------S-HHHHHHHHHS
T ss_pred HHHHHhh---CC-----CCHHHHHHhhhc
Confidence 8887666 22 267889999974
No 69
>PRK10854 exopolyphosphatase; Provisional
Probab=94.65 E-value=0.045 Score=54.61 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=50.9
Q ss_pred EEeeCCCCCHHhHHHHHhhccccCCCCeEEeee---ccccccccc-----CCceEEEEeCCCCceEEEEeeCCcccccce
Q 017089 106 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAI---QAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHAI 177 (377)
Q Consensus 106 vl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~-----g~~~~lVVDiG~~~t~i~~v~~g~~~~~~~ 177 (377)
++....+-...++..+++.+.+..|++- .+++ ++-+..++. ...+++|||||+++|.++.+-+|.+. ..
T Consensus 86 ~vATsAlReA~N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~ 162 (513)
T PRK10854 86 IVGTHTLRQALNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LV 162 (513)
T ss_pred EEehHHHHcCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee--Ee
Confidence 3333444455677778887777777652 2332 222221111 12468999999999999999888765 44
Q ss_pred EEecccHHHHHH
Q 017089 178 LRLDLAGRDLTD 189 (377)
Q Consensus 178 ~~~~~GG~~l~~ 189 (377)
...++|.-.+++
T Consensus 163 ~S~~lG~vrl~e 174 (513)
T PRK10854 163 ESRRMGCVSFAQ 174 (513)
T ss_pred EEEecceeeHHh
Confidence 556888755555
No 70
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.21 E-value=0.041 Score=54.11 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=49.4
Q ss_pred CCCCHHhHHHHHhhccccCCCCe--EEeeeccccccccc----C-CceEEEEeCCCCceEEEEeeCCcccccceEEeccc
Q 017089 111 PLNPKANREKMTQIMFETFNTPA--MYVAIQAVLSLYAS----G-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 183 (377)
Q Consensus 111 ~~~~~~~~~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~----g-~~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~G 183 (377)
.+-...+...+++.+-+.+|++. +.=-.++-++.++. + ...++|+|||+++|.++-+-+..+. ....+|+|
T Consensus 83 A~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G 160 (492)
T COG0248 83 ALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLG 160 (492)
T ss_pred HHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecc
Confidence 33344555666666666677662 22223333333322 3 5689999999999999988777666 55678888
Q ss_pred HHHHHHHH
Q 017089 184 GRDLTDAL 191 (377)
Q Consensus 184 G~~l~~~l 191 (377)
.-.+++.+
T Consensus 161 ~v~lt~~~ 168 (492)
T COG0248 161 CVRLTERF 168 (492)
T ss_pred eEEeehhh
Confidence 65444443
No 71
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.00 E-value=0.22 Score=39.18 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=41.6
Q ss_pred EEEeCCCCceEEEEeeCCcccccceEEeccc--------HHHHH--HHHHHHHHHcCCCccchhHHHHHHHH-HHhccce
Q 017089 153 IVLDSGDGVSHTVPIYEGYALPHAILRLDLA--------GRDLT--DALMKILTERGYSFTTTAEREIVRDM-KEKLAYI 221 (377)
Q Consensus 153 lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~G--------G~~l~--~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~~~~v 221 (377)
++||||++.|.++....+... ....+++| +.+++ +.+.+-++. ..+.+|++ |.++..+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~--~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDG--YIRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEE--EEEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCC--cEEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 689999999999999888766 56778999 99999 888877732 34668887 7776644
No 72
>PRK09557 fructokinase; Reviewed
Probab=93.68 E-value=2.2 Score=39.33 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=35.6
Q ss_pred HHhhccccCCCCeEEeeeccccccccc-------CCceEEEEeCCCCceEEEEeeCCcccc
Q 017089 121 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~i~~v~~g~~~~ 174 (377)
+.+.+-+.+++| |.+.++.-|++++. +..+.+.+.+| ..+-...|.+|+++.
T Consensus 88 l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ig-tGiG~giv~~G~l~~ 146 (301)
T PRK09557 88 LDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIG-TGCGAGVAINGRVHI 146 (301)
T ss_pred HHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEc-cceEEEEEECCEEEe
Confidence 333444556787 77889888887653 23677788887 446677778888764
No 73
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=93.59 E-value=2 Score=39.91 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=38.1
Q ss_pred HHhhccccCCCCeEEeeeccccccccc-------CCceEEEEeCCCCceEEEEeeCCcccc
Q 017089 121 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~i~~v~~g~~~~ 174 (377)
+.+.+-+.+++| |.+.++.-+++++. +..+.++|.+|.+. -...|.+|+++.
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~ 147 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH 147 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence 444454667877 77899988887732 45789999999764 777788998764
No 74
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=93.28 E-value=0.88 Score=41.42 Aligned_cols=68 Identities=16% Similarity=0.024 Sum_probs=44.3
Q ss_pred ChHHHHHHHHhcCCH-HHHHHhhcCcccccC-CcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhh
Q 017089 275 GIHETTYNSIMKCDV-DIRKDLYGNIVLSGG-STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 275 ~l~~~I~~~i~~~~~-~~~~~l~~nIil~GG-~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
+|.++|.+.|..+.. .-+..-.++|+++|| .+..|.+.+++.+.+.- +..++.-+.+..+..-+||.+
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-----~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-----WSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhh-----cCceEEEECCcchHHHhhhcc
Confidence 455555555543321 113444788999999 78899999999877642 235666666677877788764
No 75
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=93.23 E-value=0.87 Score=41.81 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=83.8
Q ss_pred CCCCCcEEEeCCCCceEEeeeCCCC----CCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccC
Q 017089 4 TEDIQPLVCDNGTGMVKAGFAGDDA----PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVS 79 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~----P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~ 79 (377)
+++...|.||+|+++|.+=|+--+. .....|......+ +..+ + ..-+..|+...--.
T Consensus 2 te~ilSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~k-----------di~~-------r-S~i~FTPv~~q~~i 62 (473)
T COG4819 2 TEQILSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKK-----------DISW-------R-SPIFFTPVDKQGGI 62 (473)
T ss_pred cceeeeeeeeccCceeeeeeeeeEEeecccccccceEEEEec-----------ceee-------e-cceeeeeecccCCc
Confidence 5677889999999999998874221 1111111111100 0000 0 11234566665556
Q ss_pred CHHHHHHHHHHhcccccccCCCC--C-cEEEeeCCCCCHHhHHHHHhhccccCCCCeEEee---ecccccccccCC----
Q 017089 80 NWDDMEKIWHHTFYNELRVAPEE--H-PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVA---IQAVLSLYASGR---- 149 (377)
Q Consensus 80 d~~~~~~~~~~~~~~~L~~~~~~--~-~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~---~~~~~a~~~~g~---- 149 (377)
|.++++.+...=| ..-++.++. . .++++-...-.+.-|. .+..+-..+|-=.|.-. -+++.|--+.|.
T Consensus 63 d~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~-vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~S 140 (473)
T COG4819 63 DEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARP-VLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLS 140 (473)
T ss_pred cHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchH-HHHHhhhcccceEEEecCCCHHHHhccCCccccchh
Confidence 7788888876665 556666542 3 3555543332222222 23233222321111111 122223223331
Q ss_pred --ceE--EEEeCCCCceEEEEeeCCcccccceEEecccHHHH
Q 017089 150 --TTG--IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187 (377)
Q Consensus 150 --~~~--lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l 187 (377)
.++ +=+|||+++|..+-+-.|++. ...-+++||+.+
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~Gkv~--dTaCLdiGGRLi 180 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDAGKVS--DTACLDIGGRLI 180 (473)
T ss_pred hhhceEEEEEeccCCccceeeecccccc--cceeeecCcEEE
Confidence 223 447999999999999889888 334478899744
No 76
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=91.52 E-value=0.13 Score=47.37 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=21.9
Q ss_pred ccCCceEEEEeCCCCceEEEEeeCCccc
Q 017089 146 ASGRTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 146 ~~g~~~~lVVDiG~~~t~i~~v~~g~~~ 173 (377)
..+..+++++|||+++|+|++|.||.+.
T Consensus 73 ~~g~~~~i~vDmGGTTtDi~~i~~G~p~ 100 (290)
T PF01968_consen 73 LTGLENAIVVDMGGTTTDIALIKDGRPE 100 (290)
T ss_dssp -HT-SSEEEEEE-SS-EEEEEEETTEE-
T ss_pred cCCCCCEEEEeCCCCEEEEEEEECCeee
Confidence 4578899999999999999999999986
No 77
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=89.88 E-value=0.49 Score=43.37 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=53.5
Q ss_pred EeeCCCCCHHhHHHHHhhccccCCCCeEEeee---cccccc----ccc-CCceEEEEeCCCCceEEEEeeCCcccccceE
Q 017089 107 LTEAPLNPKANREKMTQIMFETFNTPAMYVAI---QAVLSL----YAS-GRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178 (377)
Q Consensus 107 l~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~----~~~-g~~~~lVVDiG~~~t~i~~v~~g~~~~~~~~ 178 (377)
+....+-...++..+++.+.+..|++- .++. ++.++. .+. ...+++|+|+|+++|.++.+.+|.+. ...
T Consensus 62 vATsA~R~A~N~~~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~ 138 (285)
T PF02541_consen 62 VATSALREAKNSDEFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV--FSQ 138 (285)
T ss_dssp EEEHHHHHSTTHHHHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE--EEE
T ss_pred EhhHHHHhCcCHHHHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee--Eee
Confidence 333444345666777777777777653 2333 222221 122 56789999999999999999999888 667
Q ss_pred EecccHHHHHHHH
Q 017089 179 RLDLAGRDLTDAL 191 (377)
Q Consensus 179 ~~~~GG~~l~~~l 191 (377)
.+|+|.-.+++.+
T Consensus 139 Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 139 SLPLGAVRLTERF 151 (285)
T ss_dssp EES--HHHHHHHH
T ss_pred eeehHHHHHHHHH
Confidence 8999987776665
No 78
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=89.74 E-value=0.26 Score=43.96 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=82.7
Q ss_pred ceEEEEeCCCCceEEEEeeCCcccccceEEe----cccHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHhcc------
Q 017089 150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRL----DLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLA------ 219 (377)
Q Consensus 150 ~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~----~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~------ 219 (377)
-+-+.|.+|...|.++.|.+|+++..-..+. ..||-.++..+...|... ++++-+.+-
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~~------------~~~fsK~~lf~gGa~ 230 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALANY------------LERFSKSLLFEGGAA 230 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHHh------------hhhccHhheeccccc
Confidence 4568899999999999999999985433333 556666666666666422 111111111
Q ss_pred cee-cCHHHHHHHhccCCCcceEEEcCCCcEEeeCCccccccccCCCCccCCCcCCChHHHHHHHHhcCCHHHHHHhhcC
Q 017089 220 YIA-LDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGN 298 (377)
Q Consensus 220 ~v~-~~~~~~~~~~~~~~~~~~~~~~p~~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n 298 (377)
++. .+-.++..+........ |. + .-+.|.|.+.+...-.+.++. -
T Consensus 231 ~i~gv~sp~ef~~~ake~enl---------------------e~-~---------~~l~e~vvK~v~tllps~~pd---~ 276 (374)
T COG2441 231 YIAGVDSPEEFVKLAKEDENL---------------------ET-Y---------NALIEGVVKDVFTLLPSTYPD---A 276 (374)
T ss_pred ccccCCCHHHHHHHhhcccch---------------------HH-H---------HHHHHHHHHHHHHhccccCcc---e
Confidence 110 01011111111100000 00 0 015566666665553333333 3
Q ss_pred cccccCCcCCcChHHHHHHHHHhhCCCC-c--eEEEECCCCCccccchhhhhhhcc
Q 017089 299 IVLSGGSTMFPGIADRMSKEITALAPSS-M--KIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 299 Iil~GG~s~i~gl~~rl~~eL~~~~~~~-~--~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|.+.|=.++||-|-.-+++.|+..+... . .++.....-..-.+-.||+++|+-
T Consensus 277 iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAna 332 (374)
T COG2441 277 IYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANA 332 (374)
T ss_pred EEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhh
Confidence 9999999999988777776666544321 1 233333222233467788888874
No 79
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=87.77 E-value=0.38 Score=44.59 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=25.1
Q ss_pred cCCceEEEEeCCCCceEEEEeeCCcccc
Q 017089 147 SGRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 147 ~g~~~~lVVDiG~~~t~i~~v~~g~~~~ 174 (377)
....+++.+|||+++|+|+||.+|.+..
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~ 152 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAA 152 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeee
Confidence 3468899999999999999999999873
No 80
>PRK13321 pantothenate kinase; Reviewed
Probab=86.94 E-value=2 Score=38.78 Aligned_cols=19 Identities=32% Similarity=0.407 Sum_probs=16.4
Q ss_pred cEEEeCCCCceEEeeeCCC
Q 017089 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~ 27 (377)
.+.||+|.+++|+|+..++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 4789999999999998654
No 81
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=86.28 E-value=6.2 Score=34.19 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.1
Q ss_pred EEEeCCCCceEEeeeCCC
Q 017089 10 LVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~ 27 (377)
++||+|.+++|+|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999999665
No 82
>PRK13324 pantothenate kinase; Reviewed
Probab=85.90 E-value=8.6 Score=34.68 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.7
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017089 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~ 26 (377)
.+.||+|.+++|.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 478999999999998854
No 83
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=85.33 E-value=10 Score=33.94 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.7
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017089 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~ 26 (377)
-++||+|.++++.|...+
T Consensus 2 ~L~iDiGNT~~~~a~~~~ 19 (251)
T COG1521 2 LLLIDIGNTRIVFALYEG 19 (251)
T ss_pred eEEEEeCCCeEEEEEecC
Confidence 479999999999998863
No 84
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=84.59 E-value=0.67 Score=41.01 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.7
Q ss_pred CceEEEEeCCCCceEEEEeeCCcc
Q 017089 149 RTTGIVLDSGDGVSHTVPIYEGYA 172 (377)
Q Consensus 149 ~~~~lVVDiG~~~t~i~~v~~g~~ 172 (377)
..+|+.||+|+++|+|+||.+|..
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge~ 152 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGEA 152 (330)
T ss_pred CCceEEEecCCcccceEeecchhh
Confidence 367999999999999999999973
No 85
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=84.46 E-value=2.5 Score=39.37 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=37.3
Q ss_pred CcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC---CCccccchhhhhhhcc
Q 017089 298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASL 351 (377)
Q Consensus 298 nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l 351 (377)
-|+|+|-.+.+|.|.+.+.+.|...++ +++.... -..-.+-.|++++|+-
T Consensus 263 ~IilSGr~~~~~~~~~~l~~~l~~~~~----~~v~~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 263 EIILSGRFSRIPEFRKKLEDRLEDYFP----VKVRKLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred EEEEeccccccHHHHHHHHHHHHhhcc----cceeecccccccchhhhhhHHHHhhh
Confidence 399999999999999999999998876 2332221 1123478899999873
No 86
>PRK13329 pantothenate kinase; Reviewed
Probab=80.38 E-value=14 Score=33.20 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=15.7
Q ss_pred cEEEeCCCCceEEeeeC
Q 017089 9 PLVCDNGTGMVKAGFAG 25 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~ 25 (377)
.++||+|.+.+|.++..
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 89999999999999875
No 87
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=79.50 E-value=9.5 Score=34.05 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.6
Q ss_pred EEEeCCCCceEEeeeCCC
Q 017089 10 LVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~ 27 (377)
++||+|.+++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999988654
No 88
>PRK13320 pantothenate kinase; Reviewed
Probab=77.90 E-value=20 Score=32.03 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=16.2
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017089 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~ 26 (377)
.+.||+|.+++|.|+..+
T Consensus 4 ~L~iDiGNT~ik~~~~~~ 21 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEG 21 (244)
T ss_pred EEEEEeCCCcEEEEEEEC
Confidence 689999999999998864
No 89
>PRK13318 pantothenate kinase; Reviewed
Probab=77.30 E-value=23 Score=31.88 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.8
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017089 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~ 26 (377)
.+.||+|.+++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 478999999999999863
No 90
>PRK13326 pantothenate kinase; Reviewed
Probab=75.13 E-value=20 Score=32.36 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.8
Q ss_pred cEEEeCCCCceEEeeeCCC
Q 017089 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~ 27 (377)
-++||+|.+++|+|+..++
T Consensus 8 ~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEeCCCeEEEEEEECC
Confidence 4899999999999998764
No 91
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=74.29 E-value=4 Score=35.60 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=34.5
Q ss_pred ccCCceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCC
Q 017089 146 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 200 (377)
Q Consensus 146 ~~g~~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~ 200 (377)
-+|.++..|+-+-++.|+|+++.+.+-- -.-.++++.=-.....+.+.|.-.+.
T Consensus 120 iTgA~nPvvLYvSGGNTQvIAYse~rYr-IFGETlDIAvGNClDRFAR~lklsN~ 173 (336)
T KOG2708|consen 120 ITGAQNPVVLYVSGGNTQVIAYSEKRYR-IFGETLDIAVGNCLDRFARVLKLSND 173 (336)
T ss_pred eccCCCCEEEEEeCCceEEEEEccceee-eecceehhhhhhhHHHHHHHhcCCCC
Confidence 3456788899999999999999887431 12234566533455566666654433
No 92
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=73.13 E-value=21 Score=31.90 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=34.7
Q ss_pred ccCCCCeEEeeeccccccccc-------CCceEEEEeCCCCceEEEEeeCCccc
Q 017089 127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~i~~v~~g~~~ 173 (377)
...+... .+.+...||.++. .....+|||+|-++|-...|.+|++.
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 4444444 5677776766654 34688999999999999999999886
No 93
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.74 E-value=2.7 Score=43.28 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.2
Q ss_pred cCCce--EEEEeCCCCceEEEEeeCCccc
Q 017089 147 SGRTT--GIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 147 ~g~~~--~lVVDiG~~~t~i~~v~~g~~~ 173 (377)
+|..+ ++++|+|+++|+++-|.+|.+.
T Consensus 273 tg~~~g~~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 273 TGLKAGNAIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred cccccCCEEEEEcCCcceeeeeeecCcEE
Confidence 35666 9999999999999999988665
No 94
>PRK13331 pantothenate kinase; Reviewed
Probab=61.10 E-value=8.7 Score=34.46 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=24.8
Q ss_pred CCCCCCCCcEEEeCCCCceEEeeeCCC
Q 017089 1 MADTEDIQPLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 1 ~~~~~~~~~vviD~Gs~~~k~G~~~~~ 27 (377)
||+...+.-++||+|.+++++|+..++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECC
Confidence 899999999999999999999998654
No 95
>PRK13322 pantothenate kinase; Reviewed
Probab=58.77 E-value=1.3e+02 Score=26.87 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=16.0
Q ss_pred cEEEeCCCCceEEeeeCC
Q 017089 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~ 26 (377)
.++||+|.+++|.|+..+
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 489999999999999864
No 96
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=56.66 E-value=5 Score=38.11 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=20.4
Q ss_pred hcCcccccCCcCCcChHHHHHHHHHh
Q 017089 296 YGNIVLSGGSTMFPGIADRMSKEITA 321 (377)
Q Consensus 296 ~~nIil~GG~s~i~gl~~rl~~eL~~ 321 (377)
...|++|||+++=+-|.++|++.+..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 35799999999999999999988844
No 97
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=56.41 E-value=31 Score=29.21 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=17.8
Q ss_pred cccCCccCCHHHHHHHHHHhc
Q 017089 72 PIEHGIVSNWDDMEKIWHHTF 92 (377)
Q Consensus 72 p~~~g~i~d~~~~~~~~~~~~ 92 (377)
-+++|.+.|.+.+.+.++.++
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai 56 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAV 56 (187)
T ss_pred CccCcEEECHHHHHHHHHHHH
Confidence 478999999999888888877
No 98
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=54.21 E-value=59 Score=29.61 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=34.4
Q ss_pred hccccCCCCeEEeeeccccccccc------CCceEEEEeCCCCceEEEEeeCCcccc
Q 017089 124 IMFETFNTPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 124 ~lfe~~~~~~v~~~~~~~~a~~~~------g~~~~lVVDiG~~~t~i~~v~~g~~~~ 174 (377)
.+-+.+++| |++.++.-+++++- +..+.+.|.+|.+ +-...|.||+++.
T Consensus 91 ~l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~G-iG~giv~~G~~~~ 145 (291)
T PRK05082 91 TLEQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTG-VGGGIVLNGKLLT 145 (291)
T ss_pred HHHHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCC-cceEEEECCEEee
Confidence 333556787 77899888887642 3467889999854 5566677888764
No 99
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=44.17 E-value=24 Score=26.04 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.2
Q ss_pred CcEEEeCCCCceEEeeeCC
Q 017089 8 QPLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~ 26 (377)
..+.||+|.+.+++|+..+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 3789999999999998754
No 100
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=44.15 E-value=1.3e+02 Score=27.57 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=37.3
Q ss_pred HHhhccccCCCCeEEeeeccccccccc-------CCceEEEEeCCCCceEEEEeeCCccccc
Q 017089 121 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~i~~v~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+.++.-+++++- +..+.+.|.+|.+ +-...|.||+++..
T Consensus 88 l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv~~G~l~~G 147 (303)
T PRK13310 88 LRADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVFNGKPISG 147 (303)
T ss_pred HHHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEEECCEEeeC
Confidence 444444567887 77899888877542 3467888899864 67777889987644
No 101
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=43.38 E-value=2.6e+02 Score=25.72 Aligned_cols=91 Identities=20% Similarity=0.225 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcccccccCCCC--CcEEEeeCCCCCHHhHHHHHhhccccCCC--CeEEeeeccccccccc--CCceEEEE
Q 017089 82 DDMEKIWHHTFYNELRVAPEE--HPVLLTEAPLNPKANREKMTQIMFETFNT--PAMYVAIQAVLSLYAS--GRTTGIVL 155 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~--~~vvl~~~~~~~~~~~~~l~~~lfe~~~~--~~v~~~~~~~~a~~~~--g~~~~lVV 155 (377)
+.+++.++.++ ++-+.+.+. +.+.|..+-.......+.+.+.+-..+.- ..+++..++.+++++. |...|+|+
T Consensus 47 ~rie~~i~~A~-~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL 125 (336)
T KOG1794|consen 47 SRIEDMIREAK-EKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL 125 (336)
T ss_pred HHHHHHHHHHH-hhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence 45677777776 555555443 67888888887777778888877666652 3577778887777665 45899999
Q ss_pred eCCCCceEEEEeeCCccc
Q 017089 156 DSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 156 DiG~~~t~i~~v~~g~~~ 173 (377)
=-|.++.+-...-||..-
T Consensus 126 iaGTgs~crl~~~DGs~~ 143 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSEK 143 (336)
T ss_pred EecCCceeEEECCCCCcc
Confidence 999988888777788654
No 102
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=42.85 E-value=32 Score=31.40 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=40.2
Q ss_pred hHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017089 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
|...+.+.+.-++. +.|||.|+.+..+.|.+++++.+.... ....+++..+.....++-.||+.++.
T Consensus 221 la~~l~~l~~~~dp-------e~IvlgG~~~~~~~~~~~i~~~l~~~~-~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 221 IARLIADLKATLDC-------QCVVLGGSVGLAEGYLELVQAYLAQEP-AIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHhCC-------CEEEEcCccccHHHHHHHHHHHHHhcc-cccCCeEEECccCCchhhhhHHHHhc
Confidence 44445554444443 357777777766667777777776642 21244555554456667789887653
No 103
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=42.80 E-value=29 Score=29.43 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=35.0
Q ss_pred hhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 295 LYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 295 l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
-.+.|+++||.++-+-+.+.+.+-+. .+|.+... ..++-.||+++|..
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~------~~V~~~~~---~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLG------RPVVRPEV---EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHT------SEEEEESS---STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhC------CceEeCCC---CchHHHHHHHHHHh
Confidence 35679999999999888777776663 24555433 46788899988753
No 104
>PRK09698 D-allose kinase; Provisional
Probab=41.54 E-value=43 Score=30.74 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=34.8
Q ss_pred HHhhccccCCCCeEEeeeccccccccc------CCceEEEEeCCCCceEEEEeeCCcccc
Q 017089 121 MTQIMFETFNTPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~------g~~~~lVVDiG~~~t~i~~v~~g~~~~ 174 (377)
+.+.+-+.+++| |.+.++.-+++++- +..+.+.|.+|.+ +-...|.+|+++.
T Consensus 96 l~~~l~~~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv~~G~~~~ 153 (302)
T PRK09698 96 LADKLENTLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVWMNGAPWT 153 (302)
T ss_pred HHHHHHHHhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEEECCEEee
Confidence 333343557887 77888887776531 3457888999855 5566678888764
No 105
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=39.80 E-value=38 Score=31.08 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=40.2
Q ss_pred hHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhC-CCCceEEEECCCCCccccchhhhhhh
Q 017089 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA-PSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~-~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|...|.+.+.-++. +.|||-||.+..+-|.+.+++.+.+.. +....+.|..+.....+.-.||+.++
T Consensus 233 la~~l~n~~~~ldP-------~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 233 LAICLGNILTIVDP-------HLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHcCC-------CEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 44455555554543 357777777776777788888887543 22223455444444566777887765
No 106
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=39.58 E-value=84 Score=23.00 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=25.7
Q ss_pred EEEEeCCCCceEEEEe-eCCcccccceEEecccHHHHHHHHHHHH
Q 017089 152 GIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKIL 195 (377)
Q Consensus 152 ~lVVDiG~~~t~i~~v-~~g~~~~~~~~~~~~GG~~l~~~l~~~l 195 (377)
.+.||+|.+.+.++.+ .+|..+........-+...+-+.+.+++
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i 47 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLI 47 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHH
Confidence 5789999999988877 4666664332222213334444444444
No 107
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=39.48 E-value=29 Score=30.98 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=37.3
Q ss_pred cccccCC-cCCcChHHHHHHHHHhhCCC-CceEEEECCCCCccccchhhhhhhcc
Q 017089 299 IVLSGGS-TMFPGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 299 Iil~GG~-s~i~gl~~rl~~eL~~~~~~-~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|-+-|+. -+.|+|++++++.|..+.+. ..+|++.... -++-+||++.|..
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~---dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSE---DGSGVGAAIAAAV 240 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-S---STHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEec---CchHHHHHHHHHH
Confidence 3444444 57899999999999999987 3467776653 5689999998864
No 108
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=38.40 E-value=1.7e+02 Score=26.09 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=36.6
Q ss_pred HHhhccccCCCCeEEeeeccccccccc-------CCceEEEEeCCCCceEEEEeeCCccccc
Q 017089 121 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~i~~v~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+.++.-+++++. +..+.+.|-+|.+ +-...|.||.++..
T Consensus 88 l~~~l~~~~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG-iG~giv~~G~l~~G 147 (256)
T PRK13311 88 LQADLSRLIQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG-VGGGLIVNGSIVSG 147 (256)
T ss_pred hHHHHHHHHCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC-eEEEEEECCEEecC
Confidence 334443556777 77888888887643 3467888888854 77777889987653
No 109
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=36.59 E-value=21 Score=33.98 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=20.8
Q ss_pred cCcccccCCcCCcChHHHHHHHH
Q 017089 297 GNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 297 ~nIil~GG~s~i~gl~~rl~~eL 319 (377)
+.|++|||++.-|-|.+||++.|
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999999877
No 110
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=36.44 E-value=35 Score=25.23 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=34.4
Q ss_pred cCCccCCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccC
Q 017089 74 EHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129 (377)
Q Consensus 74 ~~g~i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~ 129 (377)
..|.+.|+..++..++.+. +.| ++..+.-.+++. ...-+.+++++++.+
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l 90 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DRL-----DHALLNDVPGLE-NPTAENLARWIYDRL 90 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-HhC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHH
Confidence 4788999999999998865 333 455555555553 446678888888755
No 111
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=35.29 E-value=20 Score=33.85 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=34.0
Q ss_pred hcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC------CCccccchhhhhhhc
Q 017089 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP------ERKYSVWIGGSILAS 350 (377)
Q Consensus 296 ~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~ 350 (377)
.++++++||.+.=.-|+++|++..... .++++-+| |.-.-+|.|...+..
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~~-----~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKER-----GGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc-----CCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 467999999999988888887766442 35665554 233447888766544
No 112
>PRK03011 butyrate kinase; Provisional
Probab=32.32 E-value=31 Score=32.75 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=34.2
Q ss_pred hcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhh
Q 017089 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 296 ~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
.+-|||+||.+.-+-|.+++++.+..+. ++.|....+...+.-.||..+
T Consensus 296 pD~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 296 VDAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHHHHHH
Confidence 3569999999987777788887777663 567776665555555665433
No 113
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=32.30 E-value=27 Score=34.11 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=20.9
Q ss_pred ceEEEEeCCCCceEEEEeeCCccc
Q 017089 150 TTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 150 ~~~lVVDiG~~~t~i~~v~~g~~~ 173 (377)
...++||||+.+|+|-.+.+|.+-
T Consensus 249 g~ll~VDIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 249 GDFILIDIGGATTDVHSAAAGELS 272 (463)
T ss_pred CCEEEEEcCccccchhhccCCCcc
Confidence 457999999999999999999554
No 114
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.29 E-value=1.8e+02 Score=26.24 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=27.4
Q ss_pred EeeecccccccccC----CceEEEEeCCCCceEEEEeeCCccc
Q 017089 135 YVAIQAVLSLYASG----RTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 135 ~~~~~~~~a~~~~g----~~~~lVVDiG~~~t~i~~v~~g~~~ 173 (377)
.+..+-.+|..++- ..-.+|||+|.++|..+.|-++++.
T Consensus 208 v~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 208 VAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 44444444444432 2468999999999999999888664
No 115
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=31.02 E-value=83 Score=27.75 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+=+++| ..+++||+|+.....+.+++..+++++-+.||-.
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (229)
T cd08627 74 DVLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGDM 118 (229)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhhh
Confidence 34555555565 2578999999999999999999999998877753
No 116
>PLN02666 5-oxoprolinase
Probab=29.50 E-value=50 Score=36.95 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.2
Q ss_pred ceEEEEeCCCCceEEEEeeCCc
Q 017089 150 TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 150 ~~~lVVDiG~~~t~i~~v~~g~ 171 (377)
.+.+++|||+++|+|+.| +|.
T Consensus 314 ~~~I~~DmGGTTtDv~li-~g~ 334 (1275)
T PLN02666 314 KPVIGFDMGGTSTDVSRY-DGS 334 (1275)
T ss_pred CCEEEEecCCceeeeEEE-cCc
Confidence 468999999999999988 554
No 117
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=29.11 E-value=88 Score=28.15 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|=+++|. .+++||+|+.....+.++++.+++++-+.||-.
T Consensus 76 dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 120 (257)
T cd08626 76 DVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGDL 120 (257)
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHh
Confidence 455666666662 578999999998889999999999998877644
No 118
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=28.73 E-value=92 Score=28.65 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=31.0
Q ss_pred EEEEeCCCCceEEEEeeCCcccccceEEecccHH---HHHHHHHHHHHHcCC
Q 017089 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR---DLTDALMKILTERGY 200 (377)
Q Consensus 152 ~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~---~l~~~l~~~l~~~~~ 200 (377)
.+=||+|+.++.++.+-++.++ .....+-|++ ...+.|.+++.+.+.
T Consensus 34 ~~GIDiGStt~K~Vlld~~~i~--~~~~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVCDGELY--GYNSMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEEEeCchhEEEEEEeCCEEE--EEEeecCCCCHHHHHHHHHHHHHHHcCC
Confidence 3457999999999999877654 3334566653 455566666655543
No 119
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=28.45 E-value=33 Score=32.10 Aligned_cols=56 Identities=13% Similarity=0.192 Sum_probs=36.4
Q ss_pred HHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC------CCccccchhhhhhhcc
Q 017089 291 IRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP------ERKYSVWIGGSILASL 351 (377)
Q Consensus 291 ~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~l 351 (377)
++..=.+.++++||.+.-..|++++++.... ..++++.+| |.-+-+|.|...|.+-
T Consensus 257 l~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~-----~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~g 318 (342)
T COG0533 257 LKHTGKKELVIAGGVAANSRLREMLEEMCKE-----RGAEVYIPPLELCTDNAAMIAYAGLLRYKAG 318 (342)
T ss_pred HHHhCCCEEEEeccHHHhHHHHHHHHHHHHh-----cCCEEEcCChHhccchHHHHHHHHHHHHHcC
Confidence 3344445699999999988777777765542 135565554 2334478888887663
No 120
>PF13941 MutL: MutL protein
Probab=28.06 E-value=36 Score=33.40 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=43.8
Q ss_pred CCcEEEeeCCCC------CHHhHHHHHhhcccc-CCCC---------eEEeeeccccc-----cccc-CCceEEEEeCCC
Q 017089 102 EHPVLLTEAPLN------PKANREKMTQIMFET-FNTP---------AMYVAIQAVLS-----LYAS-GRTTGIVLDSGD 159 (377)
Q Consensus 102 ~~~vvl~~~~~~------~~~~~~~l~~~lfe~-~~~~---------~v~~~~~~~~a-----~~~~-g~~~~lVVDiG~ 159 (377)
..+++++++.+. ...-|+.+.+++.+. .+.| .-.++|.|-+. .++- +...-+|||+|+
T Consensus 178 ~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGG 257 (457)
T PF13941_consen 178 GKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGG 257 (457)
T ss_pred CCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccC
Confidence 456777765542 345566655555431 1122 22344444333 2233 567899999999
Q ss_pred CceEEEEeeCCccccc
Q 017089 160 GVSHTVPIYEGYALPH 175 (377)
Q Consensus 160 ~~t~i~~v~~g~~~~~ 175 (377)
.+|+|-.+.+|.+...
T Consensus 258 ATTDVhSv~~~~~~~~ 273 (457)
T PF13941_consen 258 ATTDVHSVAEGSPEIP 273 (457)
T ss_pred cccchhhhccCCcccc
Confidence 9999999997765433
No 121
>PRK15027 xylulokinase; Provisional
Probab=28.00 E-value=41 Score=33.34 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=31.5
Q ss_pred hcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||+++-+-+.+.+.+-+ ..+|.+ ..+...++-.||+++|..
T Consensus 387 ~~~i~~~GGga~s~~w~Qi~Adv~------g~pv~~--~~~~~~~~a~GaA~lA~~ 434 (484)
T PRK15027 387 PQSVTLIGGGARSEYWRQMLADIS------GQQLDY--RTGGDVGPALGAARLAQI 434 (484)
T ss_pred ccEEEEeCcccCCHHHHHHHHHHh------CCeEEe--ecCCCcchHHHHHHHHHH
Confidence 456999999999886655555444 223433 223344678999999874
No 122
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=27.97 E-value=93 Score=27.93 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+=+++|. .+++||+|+.....+.++++.+++++-+.||-
T Consensus 74 dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAFI------TSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 445555556662 57899999999888999999999999887764
No 123
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=27.71 E-value=97 Score=27.90 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+=+++|. .+++||+|+.....+.++++.+++++-+.||-.
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd~ 118 (258)
T cd08630 74 DVIQAVRQHAFT------ASPYPVILSLENHCGLEQQAAMARHLQTILGDM 118 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHhhh
Confidence 445555555662 578999999998889999999999998877753
No 124
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=27.56 E-value=99 Score=27.70 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+=+++| ..+++||+|+.....+.+++..+++++-+.||-.
T Consensus 74 dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (253)
T cd08632 74 DVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGDK 118 (253)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhhh
Confidence 44555555565 2678999999998889999999999988877644
No 125
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=26.87 E-value=1e+02 Score=27.24 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+=+++| ..+++||+|+.....+.++++.+++++-+.||-.
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 118 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGDM 118 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhHH
Confidence 44555555565 3678999999988889999999999988877643
No 126
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=26.65 E-value=1e+02 Score=27.78 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+=+++| ..+++||+|+.....+.+++..+++++-|.||-.
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd~ 118 (257)
T cd08595 74 EVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGEK 118 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 44555555665 2688999999998889999999999988877743
No 127
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=26.53 E-value=1.1e+02 Score=27.06 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+=+++|. .+++||+|+.....+.++++.+++++-+.||-
T Consensus 74 dv~~aI~~~AF~------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAFI------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 345555555662 57899999998888999999999998887764
No 128
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=26.22 E-value=1e+02 Score=27.76 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+=+++| ..+++||+|+.....+.++++.+++++-|.||-
T Consensus 74 ~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34555555565 257899999998888999999999998887764
No 129
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=26.11 E-value=1e+02 Score=27.69 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+=+++| ..+++||+|+.....+.++++.+++++-+.||-
T Consensus 74 ~v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34555555665 257899999999888999999999999887774
No 130
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=25.70 E-value=1e+02 Score=27.69 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+=+++| ..+++||+|+.....+.+++..+++++-|.||-
T Consensus 74 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 44555555565 257899999999888999999999998887775
No 131
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=25.52 E-value=1.1e+02 Score=27.41 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+=+++| ..+++||+|+.....+.+++..+++++-|.||-.
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILGDK 118 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhHh
Confidence 44555555666 2578999999998889999999999988877644
No 132
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=25.30 E-value=1.1e+02 Score=27.05 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+=+++| ..+++||+|+.....+.++++.+++++-+.||-
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 44555555565 257899999998888999999999998887764
No 133
>PRK03011 butyrate kinase; Provisional
Probab=25.22 E-value=85 Score=29.85 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.7
Q ss_pred CCcEEEeCCCCceEEeeeCCCCCC
Q 017089 7 IQPLVCDNGTGMVKAGFAGDDAPR 30 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~ 30 (377)
.+.++|.+||++||+++..++.|.
T Consensus 2 ~~il~inpgststk~a~~~~~~~~ 25 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDEKPI 25 (358)
T ss_pred CEEEEEcCCCchheEEEEcCCcee
Confidence 357999999999999999877765
No 134
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=25.20 E-value=1.1e+02 Score=29.45 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=31.8
Q ss_pred eEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHHHHHHHHHHcCC
Q 017089 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 200 (377)
Q Consensus 151 ~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~ 200 (377)
..+=||+|+++|.++.+-++.++.........--....+.+.+++.+.+.
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl 194 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAGV 194 (404)
T ss_pred EEEEEEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcCC
Confidence 35668999999999998878666444332222234555566666655553
No 135
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=25.10 E-value=1.1e+02 Score=27.48 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+=+++| ..+++||+|+.....+.+++..+++++-+.||-.
T Consensus 76 ~v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 120 (257)
T cd08591 76 DVIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFGDL 120 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 34555555565 2678999999998889999999999998877644
No 136
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=25.03 E-value=50 Score=29.16 Aligned_cols=19 Identities=42% Similarity=0.316 Sum_probs=15.9
Q ss_pred cEEEeCCCCceEEeeeCCC
Q 017089 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~ 27 (377)
.++||+||+++|+....++
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 4799999999999877643
No 137
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=24.37 E-value=1.6e+02 Score=25.46 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=24.6
Q ss_pred EEeeecccccccccCCc--eEEEEeCCCCceEEEEee
Q 017089 134 MYVAIQAVLSLYASGRT--TGIVLDSGDGVSHTVPIY 168 (377)
Q Consensus 134 v~~~~~~~~a~~~~g~~--~~lVVDiG~~~t~i~~v~ 168 (377)
+.++|+.+. ....|.. ..++||+|+++.+|+-|.
T Consensus 46 l~MlPs~v~-~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 46 LKMLPSYVT-SLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp S-EEEESEE-SSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred eeccccccc-cCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 667777655 3455654 459999999999999874
No 138
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=23.74 E-value=69 Score=31.60 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=32.1
Q ss_pred hcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017089 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||.|+-+-+.+.+.+-+. .+|.+.. ...++-.||+++|..
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~g------~pv~~~~---~~e~~a~GaA~~a~~ 437 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIFG------TPVDVPE---GEEGPALGAAILAAW 437 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHhC------CceeecC---CCcchHHHHHHHHHH
Confidence 4669999999999877666665552 2344332 235778999999865
No 139
>PF13941 MutL: MutL protein
Probab=23.49 E-value=48 Score=32.54 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=18.4
Q ss_pred cEEEeCCCCceEEeeeC--CCCCCC
Q 017089 9 PLVCDNGTGMVKAGFAG--DDAPRA 31 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~--~~~P~~ 31 (377)
.+++|+||++||+-... ++.+++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ 26 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRL 26 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEE
Confidence 68999999999998776 555553
No 140
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=22.70 E-value=1.4e+02 Score=26.40 Aligned_cols=45 Identities=29% Similarity=0.357 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+=+++|. .+++||+|+.....+.++++.+++++-+.||-.
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (226)
T cd08558 74 DVIEAIKEYAFV------TSPYPVILSLENHCSLEQQKKMAQILKEIFGDK 118 (226)
T ss_pred HHHHHHHHHhcc------cCCCCeEEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 455666666662 579999999998889999999999988877744
No 141
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=22.64 E-value=1.3e+02 Score=27.19 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+=+++| ..+++||||+.....+.+++..+++++-+.||-.
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~~ 118 (260)
T cd08597 74 SVIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFGDK 118 (260)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 44555555665 2578999999988889999999999888877753
No 142
>PRK13321 pantothenate kinase; Reviewed
Probab=22.39 E-value=2.3e+02 Score=25.30 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=31.1
Q ss_pred EEEeCCCCceEEEEeeCCcccccceEEe--cccHHHHHHHHHHHHHHcC
Q 017089 153 IVLDSGDGVSHTVPIYEGYALPHAILRL--DLAGRDLTDALMKILTERG 199 (377)
Q Consensus 153 lVVDiG~~~t~i~~v~~g~~~~~~~~~~--~~GG~~l~~~l~~~l~~~~ 199 (377)
+.||+|.+.+.+..+-++..+....... .-+.+.+...+.+++...+
T Consensus 3 L~IDIGnT~ik~gl~~~~~i~~~~~~~T~~~~~~~~~~~~l~~l~~~~~ 51 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGDRLLRSFRLPTDKSRTSDELGILLLSLFRHAG 51 (256)
T ss_pred EEEEECCCeEEEEEEECCEEEEEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 7899999999998776665543221111 2356777777888776554
No 143
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=21.54 E-value=1.2e+02 Score=27.52 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=33.2
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeecc
Q 017089 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 140 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~ 140 (377)
+.-+++++|.-+..+..+++++.+ +.|+++...++|..
T Consensus 187 D~ai~VTEPTp~glhD~kr~~el~-~~f~ip~~iViNr~ 224 (284)
T COG1149 187 DLAILVTEPTPFGLHDLKRALELV-EHFGIPTGIVINRY 224 (284)
T ss_pred CEEEEEecCCccchhHHHHHHHHH-HHhCCceEEEEecC
Confidence 556899999999999999999998 88999988888775
No 144
>PRK14878 UGMP family protein; Provisional
Probab=21.28 E-value=74 Score=29.72 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=26.7
Q ss_pred hcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 017089 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335 (377)
Q Consensus 296 ~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~ 335 (377)
.++|+++||.+.=.-+.+++.+.+... .++++-++
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~ 276 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDR-----GAKFYVVP 276 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHC-----CCEEECCC
Confidence 458999999999998999998877553 24565554
No 145
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=21.13 E-value=1.5e+02 Score=26.61 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhccccCCCC
Q 017089 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.+=+++| ..+++||+|+.....+.++++.+++++-+.||-.
T Consensus 74 dv~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (254)
T cd08628 74 DVVQAIKDHAF------VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFGDK 118 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHH
Confidence 44555555665 2578999999998889999999999888877653
No 146
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=21.08 E-value=74 Score=29.40 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=25.5
Q ss_pred hcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 017089 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335 (377)
Q Consensus 296 ~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~ 335 (377)
.++|+++||.+.=.-+.++|.+.+... .++++.++
T Consensus 259 ~~~vvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~ 293 (305)
T TIGR00329 259 PKELVLVGGVSANKRLREMLETLCQEL-----NVEFYYPP 293 (305)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHC-----CCEEECCC
Confidence 357999999999888888888777543 34555543
No 147
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=20.81 E-value=8.4e+02 Score=24.27 Aligned_cols=137 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCceeEecCCCCccccCCCcceeeccchhcccCcceeeccccCCccCCHHHHHHHHH
Q 017089 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWH 89 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~~~~ 89 (377)
||||-||.-+|+=.-+...-. -.|-.-.++.....+.-..+-+-+..+.... -+.++.+++
T Consensus 12 iviDaGSSgTrl~Vy~w~~~~-g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a------------------~~~l~pLle 72 (501)
T KOG1386|consen 12 IVIDAGSSGTRLFVYKWPAES-GNPLTGIVGQIYDCLKLGPGISSFADNPEGA------------------SVYLTPLLE 72 (501)
T ss_pred EEEecCCCCceEEEEeecccC-CCcccCccchhhcccccCCChhhhccChhhh------------------HHHHHHHHH
Q ss_pred HhcccccccCCCCCcEEEeeCCCC---CHHhHHHHHhhccccCCCCeEEeeecccccccccC------------------
Q 017089 90 HTFYNELRVAPEEHPVLLTEAPLN---PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG------------------ 148 (377)
Q Consensus 90 ~~~~~~L~~~~~~~~vvl~~~~~~---~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g------------------ 148 (377)
.+-...=+-...+.||.|-.-.-+ +....+++++.+...+...+=+.+...-+-.++-.
T Consensus 73 fA~~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~~NY~LG~f~ 152 (501)
T KOG1386|consen 73 FAKEHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIAANYLLGRFG 152 (501)
T ss_pred HHHhhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHHHHHHHHhcc
Q ss_pred --------CceEEEEeCCCCceEEE
Q 017089 149 --------RTTGIVLDSGDGVSHTV 165 (377)
Q Consensus 149 --------~~~~lVVDiG~~~t~i~ 165 (377)
..|.=.+|+|+++|+|+
T Consensus 153 ~~~~~~~~~~T~G~lDlGGAS~QIt 177 (501)
T KOG1386|consen 153 KKNRWDSRKETFGALDLGGASTQIT 177 (501)
T ss_pred ccCcccCCcceeeeEecCCceeEEE
No 148
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=20.62 E-value=1.8e+02 Score=31.60 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=42.1
Q ss_pred CHHhHHHHHhhccccCCCCeEEeeecccccccccCCceEEEEeCCCCceEEEEeeCC
Q 017089 114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 170 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~~v~~g 170 (377)
....--.+++++-+.+.+|.|.++....-. ...-..--+|+|+|-+.|+=+.|.|-
T Consensus 214 h~AhYLnlL~~L~~~~~~P~ikl~~~~~~~-~~~~i~VDLVLDVGNSrTCGILIEdh 269 (1002)
T PF07520_consen 214 HQAHYLNLLDLLGQQLQVPEIKLVDNTLDD-IVPPIDVDLVLDVGNSRTCGILIEDH 269 (1002)
T ss_pred HHHHHHHHHHHHHhccCCceEEEecCCccc-cCCccceeEEEecCCcceeeEEEecC
Confidence 344445577888889999999999886655 33345678999999999988777653
No 149
>PRK00566 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=20.51 E-value=1.1e+02 Score=33.76 Aligned_cols=90 Identities=17% Similarity=0.206 Sum_probs=63.7
Q ss_pred CcEEEeeCCCCCHHhHHHHHhhccccCCCCeEEeeec--cccc-ccccCCceEEEEeCCCCceEEEEeeCCcccccce-E
Q 017089 103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ--AVLS-LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI-L 178 (377)
Q Consensus 103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~--~~~a-~~~~g~~~~lVVDiG~~~t~i~~v~~g~~~~~~~-~ 178 (377)
..+++..........-+.+.+.-.+...+.++.-|.+ .+|+ ||+....++-.|++|...=-|++=.=|.|=++-. .
T Consensus 821 ~~~i~~~~~~i~~~~~~~i~~~~i~~v~iRS~ltC~s~~gvC~~CYG~~La~~~~v~iGeaVGiIAAQSIGEPGTQLTmR 900 (1156)
T PRK00566 821 GEVIVPAGTLIDEEIADKIEEAGIEEVKIRSVLTCETRHGVCAKCYGRDLATGKLVNIGEAVGVIAAQSIGEPGTQLTMR 900 (1156)
T ss_pred CcEEEcCCCccCHHHHHHHHHcCCCEEEEcCCeeecCCCcccHhhhCccccCCCCcccCcceeEEeeeecCCCccceeee
Confidence 4566666666666666666654444455555544544 5554 7888889999999999988888888888765554 5
Q ss_pred EecccHHHHHHHHH
Q 017089 179 RLDLAGRDLTDALM 192 (377)
Q Consensus 179 ~~~~GG~~l~~~l~ 192 (377)
+.+.||-++|.-|-
T Consensus 901 TFHtGGvdIT~Glp 914 (1156)
T PRK00566 901 TFHTGGVDITGGLP 914 (1156)
T ss_pred eeeecceeccCCcc
Confidence 77899997776654
No 150
>PRK13333 pantothenate kinase; Reviewed
Probab=20.17 E-value=94 Score=26.96 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=14.6
Q ss_pred ceEEEEeCCCCceEEEEeeCCc
Q 017089 150 TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 150 ~~~lVVDiG~~~t~i~~v~~g~ 171 (377)
..++|||+|...|- ..+.+|.
T Consensus 84 ~~~lVIDaGTAiTi-Dvv~~g~ 104 (206)
T PRK13333 84 EDGVVVDAGSAITV-DIMSNGI 104 (206)
T ss_pred CCeEEEEcCCceEE-EEEcCCc
Confidence 57999999987553 3445553
No 151
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=20.08 E-value=89 Score=29.14 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=21.8
Q ss_pred hcCcccccCCcCCcChHHHHHHHHHh
Q 017089 296 YGNIVLSGGSTMFPGIADRMSKEITA 321 (377)
Q Consensus 296 ~~nIil~GG~s~i~gl~~rl~~eL~~ 321 (377)
..+|+|+||.+.=.-+.++|.+.+..
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~ 268 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAED 268 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 45899999999998888888887755
No 152
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=20.02 E-value=73 Score=29.94 Aligned_cols=72 Identities=21% Similarity=0.203 Sum_probs=43.6
Q ss_pred hHHHHHHHHhcCCHHHHHHhhcCcccccCCcCCcChHHHHHHHHHhhCCCCceEEE---ECCCCCccccchhhhhhhcc
Q 017089 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKV---VAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIil~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v---~~~~~~~~~~w~Gasi~a~l 351 (377)
|.+-...+|..|+ ++.+.....|+.||.|.-.-++.+|.+........ .++. ..+++..+-+|.|=-++-+.
T Consensus 288 i~~Kt~~ai~~~~--l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t--~i~Pp~~lCsDNgiMIaw~Gie~l~~~ 362 (405)
T KOG2707|consen 288 ISSKTHRAIKSLL--LQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCT--SIKPPPSLCSDNGIMIAWTGIEMLRNG 362 (405)
T ss_pred HHHHHHHHHHHhh--hcccCCceEEEcCCccchHHHHHHHHHHHHhhCCc--cccCChhhcCCcchhhhhHHHHHHhcc
Confidence 4444445555555 44555566899999999987888887755444332 1221 12235567789987766444
No 153
>PRK13317 pantothenate kinase; Provisional
Probab=20.00 E-value=88 Score=28.53 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=23.8
Q ss_pred CCceEEEEeCCCCceEEEEeeCCcccccceEEecccHHHHHH
Q 017089 148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189 (377)
Q Consensus 148 g~~~~lVVDiG~~~t~i~~v~~g~~~~~~~~~~~~GG~~l~~ 189 (377)
.....+++++|.+.. +.-+.++. .....-..+||-.+..
T Consensus 94 ~~~~~~i~~iG~g~s-i~~~~g~~--~~r~~Gt~iGGgt~~g 132 (277)
T PRK13317 94 DLNDYIFTNIGTGTS-IHYVDGNS--QRRVGGTGIGGGTIQG 132 (277)
T ss_pred CCCcEEEEEecCceE-EEEEeCCc--eEEEccccccHHHHHH
Confidence 556778888888855 66555442 2233455788864443
Done!