BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017090
(377 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D8Z1|ASCC1_MOUSE Activating signal cointegrator 1 complex subunit 1 OS=Mus musculus
GN=Ascc1 PE=2 SV=1
Length = 356
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 17/197 (8%)
Query: 189 SSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVM-DALDNRPLFIRL 247
S D G+D +IF PK HLT+ ML L ++ + +L+ + + D RPL + +
Sbjct: 161 SKDRGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEM 220
Query: 248 KGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT 307
G++ M +LYA V +RL +++ F GL+ +++ +KLHAT
Sbjct: 221 AGIEYMNDDPAMVDVLYAKVHMKDGSNRLQELVDRVLERFQSLGLIV-KEWTS-VKLHAT 278
Query: 308 LMNIRHKKRRKGTRRVDY--------------FDARDIFKQFGSKEWGEYLIKEAHLSQR 353
+MN +K R + FD R+I K F + +G + H+SQR
Sbjct: 279 VMNTLLRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKTFENFYFGSLRLNSIHISQR 338
Query: 354 FVYDESGFYHCCASIPF 370
F D G Y C + F
Sbjct: 339 FTVDSFGNYASCGHVDF 355
Score = 38.9 bits (89), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 27 VIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAV 86
+ + I GK G T+KK E E I +P E I+I G + V A +I ++
Sbjct: 68 LYKHIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVITGQHRNGVVSARTRIDVLLDTFR 127
Query: 87 ESPSLDYSHFVSLPLAVHPELVDKLVNFQNTIL 119
++HF+S L E+ ++ + FQ +L
Sbjct: 128 RRQP--FTHFLSFFLN-EVEVQERFLMFQEEVL 157
>sp|Q8N9N2|ASCC1_HUMAN Activating signal cointegrator 1 complex subunit 1 OS=Homo sapiens
GN=ASCC1 PE=1 SV=1
Length = 400
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Query: 188 TSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSK-VMDALDNRPLFIR 246
S D G+D SIF PK HLT+ ML L +++ + +L+ + + D +PL +
Sbjct: 189 CSMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVE 248
Query: 247 LKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHA 306
+ G++ M +LYA V +RL +++ F +GL+ +++N +KLHA
Sbjct: 249 MAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIV-KEWN-SVKLHA 306
Query: 307 TLMNIRHKKRRKGTRRVDYFDA--RDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHC 364
T+MN +K R + + A + IFK+ S + G ++K L R Y+++ HC
Sbjct: 307 TVMNTLFRKDPNAEGRYNLYTAEGKYIFKERESFD-GRNILKSFALLPRLEYNDAISAHC 365
Query: 365 CASIP 369
+P
Sbjct: 366 NLCLP 370
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 29 RFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVES 88
R I GK G T+KK E E I +P ++ I+I G + V A +I ++
Sbjct: 99 RHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRIDVLLDTFRRK 158
Query: 89 PSLDYSHFVSLPLAVHPELVDKLVNFQNTILG 120
++HF++ L E+ + + FQ +L
Sbjct: 159 QP--FTHFLAFFLN-EVEVQEGFLRFQEEVLA 187
>sp|Q7TN79|AKA7G_MOUSE A-kinase anchor protein 7 isoform gamma OS=Mus musculus GN=Akap7
PE=1 SV=2
Length = 314
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 20/171 (11%)
Query: 204 TFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARIL 263
+FH+T+L+++L N+D VN T+ L + V + L+ + L + +G+ +G
Sbjct: 91 SFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGKHLALPFQGIGTFQGQ------- 143
Query: 264 YAPVEEIGDGDR---LLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKK--RRK 318
++ DGD LL + F E G++ ++ K H T M + R+K
Sbjct: 144 -VGFVKLADGDHVSALLEIAETAKRTFREKGILAGE--SRTFKPHLTFMKLSKAPMLRKK 200
Query: 319 GTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDES-GFYHCCASI 368
G R+++ +++QF +GE L+ + L +S G+YHC +SI
Sbjct: 201 GVRKIE----PGLYEQFIDHRFGEELLYQIDLCSMLKKKQSNGYYHCESSI 247
>sp|Q6JP77|AKA7G_RAT A-kinase anchor protein 7 isoforms delta and gamma OS=Rattus
norvegicus GN=Akap7 PE=1 SV=1
Length = 353
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 204 TFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARIL 263
+FH+T+L+++L N+D VN T+ L + V + L+ + L + G+ +G +
Sbjct: 130 SFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGKHLTLPFHGIGTFQGQVGFVK-- 187
Query: 264 YAPVEEIGDGDR---LLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKR--RK 318
+ DGD LL + F E G++ ++ K H T M + +K
Sbjct: 188 ------LADGDHVSALLEIAETAKRTFQEKGILAGE--SRTFKPHLTFMKLSKAPMLWKK 239
Query: 319 GTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDES-GFYHCCASI 368
G R+++ +++QF +GE ++ + L +S G+YHC +SI
Sbjct: 240 GVRKIE----PGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSI 286
>sp|Q9P0M2|AKA7G_HUMAN A-kinase anchor protein 7 isoform gamma OS=Homo sapiens GN=AKAP7
PE=1 SV=2
Length = 348
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 14/168 (8%)
Query: 204 TFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARIL 263
+FH+T+L+++L N+D VN + L + + + L + L + +G+ ++
Sbjct: 125 SFHITLLVMQLLNEDEVNIGIDALLELKPFIEELLQGKHLTLPFQGIGTFGN-----QVG 179
Query: 264 YAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKK--RRKGTR 321
+ + E + LL + F E G++ ++ K H T M + R+ G +
Sbjct: 180 FVKLAEGDHVNSLLEIAETANRTFQEKGILVGE--SRSFKPHLTFMKLSKSPWLRKNGVK 237
Query: 322 RVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDES-GFYHCCASI 368
++D D++++F S +GE ++ L +S G+YHC +SI
Sbjct: 238 KID----PDLYEKFISHRFGEEILYRIDLCSMLKKKQSNGYYHCESSI 281
>sp|A6X982|YOGD_SCHPO Uncharacterized protein C15D4.13c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC15D4.13c PE=4 SV=2
Length = 204
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 188 TSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRL 247
TS+D I S F P+ HLT+ M+ + N + V + L + ++ + + + I L
Sbjct: 28 TSNDPMI-LSGFRGPRVSHLTIGMIPVKNDEDVLKCMDFLYNKEDEIRKSYGEKKITIDL 86
Query: 248 KGLDLMRGSKDKARILYA-PVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHA 306
KG S +A++LYA PV++ + +++ F E L F +D + L LH
Sbjct: 87 KGTSFFGKSPQEAKVLYATPVDKHNEWLKVI---------FTEHNL-FTKD-ARPLTLHC 135
Query: 307 TLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYL-IKEAHLSQRFVYDESG--FYH 363
TL+N R+ K + RR+ +F++ +++G W + + + + + E G +Y
Sbjct: 136 TLLNSRYIKYQ--GRRIRFFNSEPFMEKYGQFLWAHNIELDKLSIMKTGAVGEPGNMYYE 193
Query: 364 CCASIP 369
ASIP
Sbjct: 194 ELASIP 199
>sp|Q0KCT4|PNP_CUPNH Polyribonucleotide nucleotidyltransferase OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pnp
PE=3 SV=1
Length = 723
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEK 77
++ M++ IR + GK GST + KE G I + +++ +I I STD +A+A +
Sbjct: 557 MITMKIHPDKIREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTDGMAEAKRR 613
Query: 78 IQAIIAEA 85
I+ I AEA
Sbjct: 614 IEGITAEA 621
>sp|Q473U7|PNP_CUPPJ Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=pnp PE=3
SV=1
Length = 728
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEK 77
++ M++ IR + GK GST + KE G I + +++ +I I STD +A+A +
Sbjct: 557 MITMKIHPDKIREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTDGMAEAKRR 613
Query: 78 IQAIIAEA 85
I+ I AEA
Sbjct: 614 IEGITAEA 621
>sp|Q1LPW7|PNP_RALME Polyribonucleotide nucleotidyltransferase OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=pnp PE=3 SV=1
Length = 725
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEK 77
++ M++ IR + GK GST + KE G I + +++ +I I STD +A+A +
Sbjct: 557 MITMKIHPDKIREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTDGMAEAKRR 613
Query: 78 IQAIIAEA 85
I+ I AEA
Sbjct: 614 IEGITAEA 621
>sp|B3R3W3|PNP_CUPTR Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
taiwanensis (strain R1 / LMG 19424) GN=pnp PE=3 SV=1
Length = 723
Score = 38.1 bits (87), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEK 77
++ M++ IR + GK GST + KE G I + +++ +I I ST+ +A+A +
Sbjct: 557 MITMKIHPDKIREVIGKGGSTIQALTKETGTTIDI---QEDGTITIASTSTEGMAEAKRR 613
Query: 78 IQAIIAEA 85
I+ I AEA
Sbjct: 614 IEGITAEA 621
>sp|Q31GI3|UVRC_THICR UvrABC system protein C OS=Thiomicrospira crunogena (strain XCL-2)
GN=uvrC PE=3 SV=1
Length = 613
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 200 IKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDK 259
+K + L L++ K ++N A +V K++ LDN PL KG G K
Sbjct: 457 VKKEGLPLPDLIVIDGGKGQLNKAIDVFKTLE------LDNLPLVSVAKG----EGRKAG 506
Query: 260 ARILYAPVEEIG----DGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI 311
ILY P E G D LH I D + + HR +K + H+ L +I
Sbjct: 507 LEILYTPFNEEGIDLEADDIALHLLNYIRDEAHRFAITSHRSRRQKAQTHSRLEDI 562
>sp|B7IUK0|TRMD_BACC2 tRNA (guanine-N(1)-)-methyltransferase OS=Bacillus cereus (strain
G9842) GN=trmD PE=3 SV=1
Length = 244
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 19/85 (22%)
Query: 278 HACQVIIDAFNEAGLVFHRDYNKK-----LKLHATLMNIRHKK----------RRKGTRR 322
HA QV D+F+ GL+ H Y + +K+ LM+ HK RR TRR
Sbjct: 163 HASQVE-DSFS-TGLLEHPHYTRPADFRGMKVPDVLMSGNHKNIDEWRHKESLRRTYTRR 220
Query: 323 VDYFDARDIFKQFGSKEWGEYLIKE 347
D D RD+ KQ K+W E + +E
Sbjct: 221 PDLLDDRDLSKQ--EKKWLEEIKRE 243
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,068,765
Number of Sequences: 539616
Number of extensions: 5644844
Number of successful extensions: 19443
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 19411
Number of HSP's gapped (non-prelim): 113
length of query: 377
length of database: 191,569,459
effective HSP length: 119
effective length of query: 258
effective length of database: 127,355,155
effective search space: 32857629990
effective search space used: 32857629990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)