Query 017090
Match_columns 377
No_of_seqs 324 out of 1412
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:46:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vfk_A AKAP18 delta; APO, hydr 100.0 1.9E-31 6.5E-36 243.2 12.2 203 148-373 1-204 (205)
2 1vgj_A Hypothetical protein PH 99.9 6.2E-27 2.1E-31 209.4 17.7 152 198-371 32-183 (184)
3 1iuh_A 2'-5' RNA ligase; riken 99.9 2.9E-23 9.8E-28 188.8 14.9 175 151-373 2-182 (198)
4 2d4g_A Hypothetical protein BS 99.8 1.4E-19 4.7E-24 159.9 14.9 139 199-372 30-169 (171)
5 1jh6_A Cyclic phosphodiesteras 99.7 1.2E-17 4.3E-22 150.7 11.3 173 151-373 8-182 (189)
6 2cte_A Vigilin; K homology typ 99.6 3.1E-15 1.1E-19 120.6 7.7 74 13-87 13-87 (94)
7 1vig_A Vigilin; RNA-binding pr 99.5 9.4E-15 3.2E-19 111.7 7.3 67 15-82 3-70 (71)
8 2ctj_A Vigilin; K homology typ 99.5 7.9E-15 2.7E-19 118.4 7.1 74 13-87 13-88 (95)
9 2ctm_A Vigilin; K homology typ 99.5 3E-14 1E-18 115.0 8.5 75 12-87 12-88 (95)
10 2ctl_A Vigilin; K homology typ 99.5 3.3E-14 1.1E-18 115.2 8.7 71 16-87 16-90 (97)
11 2ctk_A Vigilin; K homology typ 99.5 2.4E-14 8.3E-19 117.4 7.3 69 17-86 17-86 (104)
12 2dgr_A Ring finger and KH doma 99.5 3.1E-14 1.1E-18 112.1 6.7 68 16-84 9-76 (83)
13 2opv_A KHSRP protein; KH domai 99.4 2.1E-13 7.2E-18 107.7 8.4 68 16-84 13-85 (85)
14 1zzk_A Heterogeneous nuclear r 99.4 1E-12 3.4E-17 103.0 8.4 70 15-85 5-77 (82)
15 1dtj_A RNA-binding neurooncolo 99.4 7.7E-13 2.6E-17 102.0 6.5 67 17-84 3-75 (76)
16 2axy_A Poly(RC)-binding protei 99.4 9.4E-13 3.2E-17 101.0 6.6 68 16-84 4-72 (73)
17 2p2r_A Poly(RC)-binding protei 99.4 9.1E-13 3.1E-17 101.7 6.4 69 15-84 3-74 (76)
18 2cpq_A FragIle X mental retard 99.3 5.1E-13 1.8E-17 106.5 4.5 69 14-84 12-81 (91)
19 1x4n_A FAR upstream element bi 99.3 1.7E-12 6E-17 103.9 7.2 71 16-87 14-87 (92)
20 1we8_A Tudor and KH domain con 99.3 1.7E-12 5.9E-17 106.3 7.1 68 17-85 15-87 (104)
21 1x4m_A FAR upstream element bi 99.3 1.3E-12 4.5E-17 105.1 6.2 69 17-86 15-88 (94)
22 1ec6_A RNA-binding protein NOV 99.3 1.4E-12 4.8E-17 103.3 6.3 70 17-87 3-78 (87)
23 2hh3_A KH-type splicing regula 99.3 2.4E-12 8E-17 105.9 7.6 70 17-87 11-83 (106)
24 1wvn_A Poly(RC)-binding protei 99.3 1.7E-12 5.7E-17 101.7 6.0 69 16-85 5-76 (82)
25 1j5k_A Heterogeneous nuclear r 99.3 2E-12 6.8E-17 102.9 6.3 68 17-85 14-84 (89)
26 2hh2_A KH-type splicing regula 99.3 2.8E-12 9.7E-17 105.6 6.4 70 15-85 5-80 (107)
27 2ctf_A Vigilin; K homology typ 99.3 7E-12 2.4E-16 102.4 8.0 68 17-87 27-95 (102)
28 3krm_A Insulin-like growth fac 99.3 6E-11 2.1E-15 104.0 14.4 104 18-122 4-114 (163)
29 1k1g_A SF1-BO isoform; splicin 99.3 6.4E-12 2.2E-16 107.0 6.9 68 17-84 7-99 (131)
30 2yqr_A KIAA0907 protein; struc 99.2 1.8E-11 6.1E-16 102.5 7.4 69 18-86 13-101 (119)
31 2jzx_A Poly(RC)-binding protei 99.2 1E-10 3.4E-15 102.3 11.7 104 17-121 5-117 (160)
32 1j4w_A FUSE binding protein; s 99.2 7.3E-11 2.5E-15 104.7 9.4 107 16-123 2-134 (174)
33 2jvz_A KH type-splicing, FAR u 99.1 1.1E-10 3.6E-15 102.3 8.6 105 17-122 2-120 (164)
34 3n89_A Defective in GERM LINE 99.1 9.9E-11 3.4E-15 115.5 7.3 68 13-81 26-103 (376)
35 3krm_A Insulin-like growth fac 99.1 2.1E-10 7.2E-15 100.5 7.6 69 18-87 86-159 (163)
36 2anr_A Neuro-oncological ventr 99.1 2.9E-10 9.8E-15 101.2 7.9 106 16-122 5-133 (178)
37 2jvz_A KH type-splicing, FAR u 99.0 1.4E-10 5E-15 101.4 5.7 68 18-86 92-162 (164)
38 2jzx_A Poly(RC)-binding protei 99.0 4E-10 1.4E-14 98.5 5.8 67 17-84 89-159 (160)
39 4aid_A Polyribonucleotide nucl 99.0 8.5E-11 2.9E-15 124.9 0.9 80 18-100 571-658 (726)
40 3u1k_A Polyribonucleotide nucl 98.9 3.9E-10 1.3E-14 118.5 4.9 62 18-82 568-629 (630)
41 1j4w_A FUSE binding protein; s 98.9 7.4E-10 2.5E-14 98.2 5.8 65 17-82 104-174 (174)
42 2anr_A Neuro-oncological ventr 98.9 7.6E-10 2.6E-14 98.4 5.9 67 17-84 104-175 (178)
43 2e3u_A PH-DIM2P, hypothetical 98.9 1.4E-09 4.9E-14 100.3 7.0 63 18-82 35-101 (219)
44 2bl5_A MGC83862 protein, quaki 98.8 5.5E-09 1.9E-13 89.6 6.0 66 18-83 3-100 (140)
45 2qnd_A FMR1 protein; KH domain 98.8 8.5E-09 2.9E-13 89.1 6.0 65 19-84 69-142 (144)
46 3n89_A Defective in GERM LINE 98.6 5.7E-08 2E-12 95.9 6.2 66 16-82 185-259 (376)
47 3cdi_A Polynucleotide phosphor 98.4 4E-08 1.4E-12 104.7 0.0 80 18-100 561-648 (723)
48 1e3p_A Guanosine pentaphosphat 98.3 2.7E-08 9.2E-13 106.5 -4.7 80 18-100 599-688 (757)
49 2qnd_A FMR1 protein; KH domain 98.2 2.3E-06 7.9E-11 73.7 6.4 93 16-121 3-95 (144)
50 2e3u_A PH-DIM2P, hypothetical 98.2 1.7E-06 5.7E-11 79.7 5.5 53 27-84 139-191 (219)
51 1tua_A Hypothetical protein AP 98.1 3.3E-06 1.1E-10 76.0 7.0 64 19-84 6-73 (191)
52 1tua_A Hypothetical protein AP 97.9 1E-05 3.5E-10 72.9 5.5 54 26-84 107-160 (191)
53 3v69_A Protein filia; RNA-bind 97.8 5.3E-05 1.8E-09 64.0 7.2 70 17-87 56-127 (140)
54 2fsq_A ATU0111 protein; alpha- 97.0 0.0055 1.9E-07 57.0 12.1 135 199-354 77-227 (243)
55 2z0s_A Probable exosome comple 91.5 0.51 1.7E-05 43.3 7.9 63 19-84 150-212 (235)
56 1go3_E DNA-directed RNA polyme 90.3 0.0049 1.7E-07 54.7 -6.8 75 18-100 8-102 (187)
57 2ba0_A Archeal exosome RNA bin 88.5 0.77 2.6E-05 42.0 6.5 59 19-81 138-196 (229)
58 2ja9_A Exosome complex exonucl 88.5 0.42 1.4E-05 42.0 4.5 59 19-80 93-152 (175)
59 2cxc_A NUSA; transcription ter 85.3 0.6 2E-05 39.8 3.5 37 17-53 36-72 (144)
60 2nn6_G Exosome complex exonucl 83.0 0.36 1.2E-05 45.8 1.2 60 19-81 212-271 (289)
61 2je6_I RRP4, exosome complex R 80.9 0.22 7.5E-06 46.3 -1.1 58 19-79 157-214 (251)
62 1y14_B B16, RPB7, DNA-directed 79.8 0.0062 2.1E-07 53.4 -11.5 80 8-100 15-104 (171)
63 2cxc_A NUSA; transcription ter 75.9 0.66 2.3E-05 39.5 0.5 39 15-53 101-139 (144)
64 2asb_A Transcription elongatio 68.8 3.4 0.00012 38.2 3.6 38 17-54 184-221 (251)
65 2pt7_G HP1451, hypothetical pr 67.4 2.7 9.2E-05 36.0 2.4 31 17-47 33-63 (152)
66 1k0r_A NUSA; two component arr 64.4 3.5 0.00012 40.2 2.8 46 9-54 227-278 (366)
67 1k0r_A NUSA; two component arr 61.2 5.6 0.00019 38.8 3.6 39 16-54 306-344 (366)
68 1j26_A Immature colon carcinom 56.0 3.8 0.00013 33.3 1.2 55 33-87 31-108 (112)
69 1wh9_A 40S ribosomal protein S 53.9 5.6 0.00019 31.0 1.8 29 18-46 36-64 (92)
70 2asb_A Transcription elongatio 50.6 7.8 0.00027 35.8 2.5 46 9-54 104-155 (251)
71 2jva_A Peptidyl-tRNA hydrolase 48.5 12 0.0004 30.1 3.0 54 32-87 23-100 (108)
72 2o5a_A BH1328 protein; BHR21, 48.4 52 0.0018 26.9 7.0 63 217-294 4-66 (125)
73 2id1_A Hypothetical protein; a 44.3 70 0.0024 26.3 7.2 62 218-294 5-66 (130)
74 3i24_A HIT family hydrolase; s 43.3 41 0.0014 28.2 5.8 81 212-292 47-138 (149)
75 1jh6_A Cyclic phosphodiesteras 42.6 29 0.001 29.8 4.9 42 256-308 4-45 (189)
76 2fsq_A ATU0111 protein; alpha- 42.1 41 0.0014 30.8 6.0 36 200-235 174-210 (243)
77 3eik_A Tata-box-binding protei 40.1 38 0.0013 30.5 5.3 39 46-87 178-217 (218)
78 3i0u_A Phosphothreonine lyase 38.6 1.4E+02 0.0048 26.4 8.4 89 203-305 80-182 (218)
79 4dh9_Y YAEJ; ribosome, YAEJ, r 38.3 29 0.00098 29.1 4.0 54 32-87 23-100 (140)
80 2vv5_A MSCS, small-conductance 37.1 1.3E+02 0.0045 27.6 8.9 83 205-294 186-268 (286)
81 3gku_A Probable RNA-binding pr 36.2 10 0.00035 34.4 0.9 36 17-52 92-127 (225)
82 1hh2_P NUSA, N utilization sub 33.9 24 0.00083 34.0 3.2 45 9-53 223-273 (344)
83 3iev_A GTP-binding protein ERA 33.7 14 0.00049 34.4 1.5 35 18-52 241-284 (308)
84 3ups_A Iojap-like protein; PSI 33.2 88 0.003 25.9 6.1 63 217-294 20-82 (136)
85 3bo6_A Hydrophilic protein, VI 31.7 1.6E+02 0.0054 26.1 7.6 93 201-305 80-184 (220)
86 3ohe_A Histidine triad (HIT) p 30.7 1.3E+02 0.0043 24.6 6.8 79 211-289 46-135 (137)
87 1ytb_A Protein (tata binding p 30.0 51 0.0017 28.7 4.3 29 58-86 149-178 (180)
88 3v2d_H 50S ribosomal protein L 28.3 76 0.0026 27.5 5.2 33 47-82 120-152 (180)
89 2zjr_E 50S ribosomal protein L 28.1 73 0.0025 27.8 5.0 33 46-81 119-151 (185)
90 3j21_F 50S ribosomal protein L 26.7 97 0.0033 27.0 5.5 33 47-83 127-159 (184)
91 1wf3_A GTP-binding protein; GT 26.6 19 0.00064 33.6 1.0 34 19-52 232-274 (301)
92 1rm1_A Tata-box binding protei 25.9 82 0.0028 28.7 5.1 37 47-86 201-238 (240)
93 1fit_A FragIle histidine prote 25.6 2.1E+02 0.0072 23.1 7.4 46 199-247 37-82 (147)
94 2xzm_C KH domain containing pr 24.4 34 0.0012 31.3 2.2 30 18-47 48-77 (243)
95 1ytb_A Protein (tata binding p 24.3 1.1E+02 0.0037 26.6 5.4 36 47-85 50-86 (180)
96 3r8s_G 50S ribosomal protein L 24.0 67 0.0023 27.8 4.0 32 47-81 119-150 (176)
97 2z8u_A Tata-box-binding protei 23.9 83 0.0028 27.5 4.6 28 58-85 157-185 (188)
98 1ais_A TBP, protein (tata-bind 23.3 96 0.0033 26.9 4.9 27 58-84 153-180 (182)
99 1nkw_E 50S ribosomal protein L 22.6 79 0.0027 28.3 4.2 33 46-81 146-178 (212)
100 1mp9_A Tata-binding protein; t 22.3 1.1E+02 0.0038 26.9 5.1 29 58-86 157-186 (198)
101 3u5c_D RP13, YS3, 40S ribosoma 21.8 37 0.0013 31.1 1.9 32 18-49 45-76 (240)
102 3i4s_A Histidine triad protein 21.4 1.9E+02 0.0064 24.0 6.2 77 212-288 52-139 (149)
103 3j20_C 30S ribosomal protein S 21.3 39 0.0014 30.2 1.9 27 19-45 42-68 (210)
104 3nrd_A Histidine triad (HIT) p 21.0 1.4E+02 0.0048 24.1 5.3 75 212-286 49-134 (135)
105 4a17_E RPL9, 60S ribosomal pro 20.9 1.2E+02 0.0041 26.5 5.0 35 47-82 129-163 (188)
106 3r8n_C 30S ribosomal protein S 20.8 26 0.00088 31.3 0.6 33 20-52 64-100 (206)
107 1rl6_A Protein (ribosomal prot 20.4 71 0.0024 27.7 3.4 31 47-80 119-149 (177)
108 3bbn_C Ribosomal protein S3; s 20.2 30 0.001 31.2 0.9 28 20-47 73-100 (218)
No 1
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=99.97 E-value=1.9e-31 Score=243.20 Aligned_cols=203 Identities=21% Similarity=0.381 Sum_probs=161.1
Q ss_pred ccccceeEEEeecCCCccceecccccccccccccccCCCCCCCCCCCCcccccCCCcceEEeeccccCCHHHHHHHHHHH
Q 017090 148 VDQEHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVL 227 (377)
Q Consensus 148 ~r~~~fvav~~~~~~~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~gi~~~~~v~p~~LHLTL~fLgl~~~~~v~~a~~~L 227 (377)
+|+++||||.+..+++.+.+...+..+- . .++|+ ...|++++++||||.|||++++++++++.++|
T Consensus 1 ~~~r~Fial~~~~~~~~~~l~~~~~~l~--~-----------~~~~~-~~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l 66 (205)
T 2vfk_A 1 YQPNYFLSIPITNKKITAGIKVLQNSIL--R-----------QDNRL-TKAMVGDGSFHITLLVMQLLNEDEVNIGTDAL 66 (205)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHHHHHH--H-----------HCGGG-GGGBCCTTCCEEEEEEECCCSHHHHHHHHHHH
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHHHH--h-----------cCcch-HHHhCCcCccEEEEEEEEcCCHHHHHHHHHHH
Confidence 4789999999987678888888877651 0 01122 23699999999999999999999999999999
Q ss_pred HHhHHHhhhhcCCCCeEEEEccccCCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcccccCCCCeeeeEE
Q 017090 228 KSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT 307 (377)
Q Consensus 228 ~~i~~~i~~~l~~~p~~l~l~Gl~~F~~dp~~~rVLya~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~~~r~fkpHiT 307 (377)
+++...+.+++..+||.|+|+|+++|++ +|||+++.+.++.+.|++|++.|.+.|..+|+... +.++|+||+|
T Consensus 67 ~~~~~~~~~~~~~~pf~l~l~g~~~F~~-----~vl~~~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~--~~~~f~PHiT 139 (205)
T 2vfk_A 67 LELKPFVEEILEGKHLTLPFHGIGTFQG-----QVGFVKLADGDHVSALLEIAETAKRTFQEKGILAG--ESRTFKPHLT 139 (205)
T ss_dssp HHHHHHHHHHTTTSCCEEEEEEEEEETT-----TEEEEEECCSHHHHHHHHHHHHHHHHHHTTTCCBC--CSSCCCCCEE
T ss_pred HHHHHHHHHHhCCCCcEEEEechhhCCC-----cEEEEeecccccHHHHHHHHHHHHHHHHHcCCCcC--CCCCcceEEE
Confidence 9987666666767999999999999987 79999998632347899999999999999999542 2689999999
Q ss_pred eeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeee-cCCCCCceeEeEEEeCCCC
Q 017090 308 LMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRF-VYDESGFYHCCASIPFPEN 373 (377)
Q Consensus 308 L~r~~~~~~~~~~~~~~~fda~~il~~~~~~~fG~~~v~~I~Ls~~~-~~~~~g~Y~~l~si~L~~~ 373 (377)
|+|.++...... .....++ .++++.+.++.||.+.|++|+||++. ..+.+|+|+++++++|++.
T Consensus 140 lar~~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~v~~i~L~~~~~~~~~~g~Y~~~~~~~L~~~ 204 (205)
T 2vfk_A 140 FMKLSKAPMLWK-KGVRKIE-PGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVIGEK 204 (205)
T ss_dssp EEEGGGCHHHHH-TTCSSCC-GGGGGGGTTCEEEEEECCEEEEEESSSCCCTTSCCCEEEEEECSSC
T ss_pred EEecccchhhhh-ccccccC-HHHHHHhcCCcCcEEEeCEEEEEEcCCCCCCCCcEEEEEEEecCCC
Confidence 999865311000 0012243 46788899999999999999999876 4556899999999999864
No 2
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=99.95 E-value=6.2e-27 Score=209.41 Aligned_cols=152 Identities=16% Similarity=0.344 Sum_probs=130.4
Q ss_pred cccCCCcceEEeeccccCCHHHHHHHHHHHHHhHHHhhhhcCCCCeEEEEccccCCCCCCCCceEEEEeeeccCChhHHH
Q 017090 198 IFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLL 277 (377)
Q Consensus 198 ~~v~p~~LHLTL~fLgl~~~~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l~Gl~~F~~dp~~~rVLya~v~~~~~~~~L~ 277 (377)
.|++|++|||||.|+|++++++++++.++|+++.. ..+||.+++.|+|+|++ +++|+|||++++++ +.|.
T Consensus 32 ~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~~------~~~pf~l~l~g~g~F~~-~~~p~vl~~~v~~~---~~L~ 101 (184)
T 1vgj_A 32 KFVERENLHITLKFLGEITEEQAEEIKNILKKIAE------KYKKHEVKVKGIGVFPN-PNYIRVIWAGIEND---EIIR 101 (184)
T ss_dssp EECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHHT------TSBCEEEEEEEEEEEEC-SSSEEEEEEEEETC---HHHH
T ss_pred EecCccccEEEEEeecCCCHHHHHHHHHHHHHHHc------cCCCeEEEEeeEeeCCC-CCCCcEEEEEecCC---HHHH
Confidence 49999999999999999999999999999988732 35899999999999987 78899999999863 7899
Q ss_pred HHHHHHHHHHHHCCCcccccCCCCeeeeEEeeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeeecCC
Q 017090 278 HACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYD 357 (377)
Q Consensus 278 ~l~~~l~~~f~~~Gl~~~~~~~r~fkpHiTL~r~~~~~~~~~~~~~~~fda~~il~~~~~~~fG~~~v~~I~Ls~~~~~~ 357 (377)
+|++.|.+.+...|+..+ . +|+||+||+|.+.... .-++.++++.+.++.+|.+.|++|+|+++....
T Consensus 102 ~L~~~l~~~l~~~g~~~~---~-~f~PHiTLar~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~L~~s~~~~ 169 (184)
T 1vgj_A 102 EMAREIEDELAKLGFKKE---G-NFVAHITLGRVKFVKD--------KLGLTMKLKELANEDFGSFVVDAIELKKSTLTP 169 (184)
T ss_dssp HHHHHHHHHHHTTTCCCC---C-CCCCEEEEEEEEEESC--------HHHHHHHHHHTTTCEEEEEEECEEEEEEEEEET
T ss_pred HHHHHHHHHHHHcCCCCC---C-CccceEEEEeecccCc--------HHHHHHHHHHhcCCCCCcEEEeEEEEEEeeecC
Confidence 999999999999999875 5 9999999999754211 012457788888999999999999998876655
Q ss_pred CCCceeEeEEEeCC
Q 017090 358 ESGFYHCCASIPFP 371 (377)
Q Consensus 358 ~~g~Y~~l~si~L~ 371 (377)
.++.|+++++++|.
T Consensus 170 ~g~~y~~l~~~~L~ 183 (184)
T 1vgj_A 170 KGPIYETLARFELS 183 (184)
T ss_dssp TEEEEEEEEEEECB
T ss_pred CCCceeEEEEEeCC
Confidence 57899999999993
No 3
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=99.90 E-value=2.9e-23 Score=188.83 Aligned_cols=175 Identities=16% Similarity=0.168 Sum_probs=137.6
Q ss_pred cceeEEEeecCCCccceecccccccccccccccCCCCCCCCCCCCcccccCCCcceEEeeccccCCHHHHHHHHHHHHHh
Q 017090 151 EHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSI 230 (377)
Q Consensus 151 ~~fvav~~~~~~~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~gi~~~~~v~p~~LHLTL~fLgl~~~~~v~~a~~~L~~i 230 (377)
.+||||.+.. +..+.+...+..+. . +. ...|++++++||||.|+|++++++++++.++|+++
T Consensus 2 RlFial~~p~-~~~~~l~~~~~~l~---------------~-~~-~~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~ 63 (198)
T 1iuh_A 2 RLFYAVFLPE-EVRAALVEAQTKVR---------------P-FR-GWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRL 63 (198)
T ss_dssp EEEEEEECCH-HHHHHHHHHHGGGT---------------T-CT-TEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHH
T ss_pred EEEEEEeCCH-HHHHHHHHHHHHhh---------------h-hc-CCcccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHH
Confidence 4799998864 56677777766541 0 11 23599999999999999999999999999999887
Q ss_pred HHHhhhhcCCCCeEEEEccccCCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHC-C-----CcccccCCCCeee
Q 017090 231 SSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEA-G-----LVFHRDYNKKLKL 304 (377)
Q Consensus 231 ~~~i~~~l~~~p~~l~l~Gl~~F~~dp~~~rVLya~v~~~~~~~~L~~l~~~l~~~f~~~-G-----l~~~~~~~r~fkp 304 (377)
.. ..+||.|+|.|+++|++ ..+|+|||+++ . ...|.+|++.|.+.+... | +..+ .++|+|
T Consensus 64 ~~------~~~pf~l~l~g~g~F~~-~~~p~vl~l~v-~---~~~L~~L~~~l~~~l~~~~g~~~~~~~~~---~~~f~P 129 (198)
T 1iuh_A 64 AR------LEAPFRARLRGTGYFPN-EGTPRVWFAKA-E---AEGFLRLAEGLRAGVEELLGEEAVRIPGW---DKPFKP 129 (198)
T ss_dssp HH------HSCCEEEEEEEEEEESS-SSSCSEEEEEE-E---CHHHHHHHHHHHHHHHHHHGGGGGGSTTT---TSCCCC
T ss_pred hc------cCCCeEEEEcceEECCC-CCCCCEEEEEC-C---CHHHHHHHHHHHHHHHHhcCCCcccccCC---CCCCCC
Confidence 43 24899999999999986 67889999999 4 378999999999999999 9 8765 689999
Q ss_pred eEEeeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeeecCCCCCceeEeEEEeCCCC
Q 017090 305 HATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPFPEN 373 (377)
Q Consensus 305 HiTL~r~~~~~~~~~~~~~~~fda~~il~~~~~~~fG~~~v~~I~Ls~~~~~~~~g~Y~~l~si~L~~~ 373 (377)
||||+|...... .+. . ... .| .|.|++|+|+++.....++.|+++++++|.+.
T Consensus 130 HiTLar~~~~~~--------~l~--~---~l~--~~-~~~v~~~~L~~S~l~~~G~~y~~l~~~~L~~~ 182 (198)
T 1iuh_A 130 HITLARRKAPAP--------RVP--P---VLF--GL-EWPVEGFALVRSELKPKGPVYTVLEKFSLRGE 182 (198)
T ss_dssp EEEEEEESSCCC--------CCC--C---CCC--CE-EEEECEEEEEEEEECSSSEEEEEEEEEECCCC
T ss_pred cEEeEeccCcch--------hHH--H---hhc--Cc-eEEecEEEEEEEEeCCCCCeeeEEEEEECCCC
Confidence 999999753211 010 1 111 34 78999999987765555689999999999754
No 4
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=1.4e-19 Score=159.87 Aligned_cols=139 Identities=17% Similarity=0.257 Sum_probs=109.1
Q ss_pred ccCCCcceEEeeccccCCHHHHHHHHHHHHHhHHHhhhhcCCCCeEEEEccccCCCCCCCCceEEEEeeeccCChhHHHH
Q 017090 199 FIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLH 278 (377)
Q Consensus 199 ~v~p~~LHLTL~fLgl~~~~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l~Gl~~F~~dp~~~rVLya~v~~~~~~~~L~~ 278 (377)
|++| ||||.|+|.+++++++++.++|+++.. ..+||.+++.|+|+|+. . ..|||+++++ .+.|.+
T Consensus 30 ~v~p---HiTL~f~g~~~~~~~~~l~~~l~~~~~------~~~pf~l~l~~~g~F~~--~-~~vl~l~~~~---~~~L~~ 94 (171)
T 2d4g_A 30 LIPP---HLTLRASFECAEEKADQLVSHLRNIAK------ESHPLVLKMTKYSSFAP--V-NNVIYIKAEP---TEELKT 94 (171)
T ss_dssp TSCS---CBCCSSCEECCGGGHHHHHHHHHHHHH------TCCCEEEEEEEEEECTT--T-CCCEEEEECC---CHHHHH
T ss_pred CCCC---eEEeecCCcCChHHHHHHHHHHHHHHc------cCCCEEEEECCcEEeCC--C-CcEEEEEccC---ChHHHH
Confidence 8888 999999999999999999999988742 35899999999999973 1 1499999985 378999
Q ss_pred HHHHHHHHHHHCCCcccccCCCCeeeeEEeeeecccccccCCCccccccHHHHHHHhCCCcc-ccEEecEEEEEeeecCC
Q 017090 279 ACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEW-GEYLIKEAHLSQRFVYD 357 (377)
Q Consensus 279 l~~~l~~~f~~~Gl~~~~~~~r~fkpHiTL~r~~~~~~~~~~~~~~~fda~~il~~~~~~~f-G~~~v~~I~Ls~~~~~~ 357 (377)
|++.|.+.|... .+ .++|+|||||+|.... . ++.++++.+....+ +.+.|++|+|+++ .
T Consensus 95 L~~~l~~~~~~~---~~---~~~f~PHiTLar~~~~---------~--~~~~~~~~~~~~~~~~~~~v~~i~L~~s---~ 154 (171)
T 2d4g_A 95 LNEKLYTGVLAG---EQ---EYNFVPHVTVGQNLSD---------D--EHSDVLGQLKMQEVSHEEIVDRFHLLYQ---L 154 (171)
T ss_dssp HHHHTTSGGGCS---CC---CSCCCCEEEEECSCCH---------H--HHHHHHHHHTTSCCCEEEEECEEEEEEE---C
T ss_pred HHHHHHhccccc---cc---CCCCCCeEEeecCCCH---------H--HHHHHHHHhcCCCCceeEEECeEEEEEE---C
Confidence 999998866541 22 6899999999984321 1 13466777544444 5899999999887 3
Q ss_pred CCCceeEeEEEeCCC
Q 017090 358 ESGFYHCCASIPFPE 372 (377)
Q Consensus 358 ~~g~Y~~l~si~L~~ 372 (377)
.++.|+++++++|++
T Consensus 155 ~g~~y~~l~~~~L~~ 169 (171)
T 2d4g_A 155 ENGSWTVYETFLLGR 169 (171)
T ss_dssp TTSCEEEEEEEECC-
T ss_pred CCCcEEEEEEEecCC
Confidence 468999999999965
No 5
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=99.73 E-value=1.2e-17 Score=150.70 Aligned_cols=173 Identities=9% Similarity=-0.020 Sum_probs=125.3
Q ss_pred cceeEEEeecCCCccceecccccccccccccccCCCCCCCCCCCCcccccCCCcceEEeeccccCCHHHHHHHHHHHHHh
Q 017090 151 EHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSI 230 (377)
Q Consensus 151 ~~fvav~~~~~~~~~~v~~~~~~~~~~~~~~~~~r~~~~~~~gi~~~~~v~p~~LHLTL~fLgl~~~~~v~~a~~~L~~i 230 (377)
.|.+.+-. .+++.+.+...++.+. ...+.++.++|||| ||.++.+ ++.+.+.|+++
T Consensus 8 ~~~f~~~p-p~~~~~~l~~~~~~l~--------------------~~~~~~~~~~HiTL--lG~~~~~-~~~l~~~L~~~ 63 (189)
T 1jh6_A 8 VYSVWALP-DEESEPRFKKLMEALR--------------------SEFTGPRFVPHVTV--AVSAYLT-ADEAKKMFESA 63 (189)
T ss_dssp EEEEEEEE-CTTTHHHHHHHHHHHH--------------------HHHTCCCCCCCEEE--EEEEEEC-HHHHHHHHHHH
T ss_pred cEEEEEEC-CHHHHHHHHHHHHHHH--------------------HHcCCCCCCCEEEE--eCCCCCC-HHHHHHHHHHH
Confidence 34444433 5666777777766541 12245778999999 8998776 88888888887
Q ss_pred HHHhhhhcCCCCeEEEEccccCCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcccccCCCCeeeeEEeee
Q 017090 231 SSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMN 310 (377)
Q Consensus 231 ~~~i~~~l~~~p~~l~l~Gl~~F~~dp~~~rVLya~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~~~r~fkpHiTL~r 310 (377)
.. ..+||.|+|.|+|+|. ..+||||++|+++ +.|.+|++.+.+. +|+.. .++|.|||||+|
T Consensus 64 a~------~~~pf~l~l~g~g~~~---~~~rvlw~~v~~~---~~L~~L~~~v~~~---~g~~~----~~~f~PHlTLar 124 (189)
T 1jh6_A 64 CD------GLKAYTATVDRVSTGT---FFFQCVFLLLQTT---PEVMEAGEHCKNH---FNCST----TTPYMPHLSLLY 124 (189)
T ss_dssp HH------TCBCEEEEEEEEEEEE---ETTEEEEEEECCC---HHHHHHHHHHHHH---TTCCC----CSCCCCEEEEEC
T ss_pred Hh------hCCCeEEEEcceeccC---ccceEEEEeecCC---HHHHHHHHHHHHH---hCCCC----CCCCCCeEEEEE
Confidence 43 3589999999999953 3569999999853 7899999999876 68865 479999999998
Q ss_pred ecccccccCCCccccccHHHHHHHh-CCCccccEEecEEEEEeeecC-CCCCceeEeEEEeCCCC
Q 017090 311 IRHKKRRKGTRRVDYFDARDIFKQF-GSKEWGEYLIKEAHLSQRFVY-DESGFYHCCASIPFPEN 373 (377)
Q Consensus 311 ~~~~~~~~~~~~~~~fda~~il~~~-~~~~fG~~~v~~I~Ls~~~~~-~~~g~Y~~l~si~L~~~ 373 (377)
.+.... ..-++.+.++.+ ..+.++.|.|++|+|.++..+ +.-+-+..+++++|+..
T Consensus 125 ~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~v~~~~L~~s~~~~~~~~~w~l~~~~~~~~~ 182 (189)
T 1jh6_A 125 AELTEE-------EKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNLNPG 182 (189)
T ss_dssp CCCCHH-------HHHHHHHHHHHHCTTCTTCEEEEEEEEEEECCTTCTTCTTCEEEEEEECBC-
T ss_pred ecCCHH-------HHHHHHHHHHhhccCCCCCcEEeeEEEEEEeCCCCCccCeEEEEEEEEcCCC
Confidence 642111 011234556556 567889999999999877642 24578999999999753
No 6
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.58 E-value=3.1e-15 Score=120.55 Aligned_cols=74 Identities=24% Similarity=0.393 Sum_probs=66.9
Q ss_pred cccceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 017090 13 LISLSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 13 ~~~~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~-~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~ 87 (377)
+.+..+.++.||+++||+|||+||+|||+|+++|||+|+||+.++ ++.|+|+|+ ++++++|+++|+.++.+..+
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHHHHHHHHHHHHT
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHHHHHHHhhcccc
Confidence 445568999999999999999999999999999999999998654 689999998 89999999999999988654
No 7
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.54 E-value=9.4e-15 Score=111.67 Aligned_cols=67 Identities=18% Similarity=0.433 Sum_probs=59.9
Q ss_pred cceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEeCCHHHHHHHHHHHHHHH
Q 017090 15 SLSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAII 82 (377)
Q Consensus 15 ~~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~-~~~v~I~g~~~~~v~~A~~~I~~iv 82 (377)
...+.++.||+++||.|||+||++|++|+++|||+|+||+.++ +..|+|+|+ .+++++|+++|+.++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-SHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-HHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999999999999998542 348999998 589999999999875
No 8
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.54 E-value=7.9e-15 Score=118.38 Aligned_cols=74 Identities=23% Similarity=0.424 Sum_probs=65.8
Q ss_pred cccceEEEEEeCccccccccCCCchhHHHHHHHh-CcEEEcCCCCC-CCcEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 017090 13 LISLSVLDMQVGASVIRFIKGKEGSTQKKFEKEM-GVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 13 ~~~~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et-~~~I~ip~~~~-~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~ 87 (377)
+.+....++.||+++|+.|||+||++||+|+++| ||+|+||+.+. ++.|+|+|++. ++++|+++|+.|+.+++.
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv~e~e~ 88 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSS-DVEKAKKQLLHLAEEKQT 88 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHH-HHHHHHHHHHHHHHHHSC
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHH-HHHHHHHHHHHHHhhhhh
Confidence 4556689999999999999999999999999999 99999998543 35899999865 999999999999998654
No 9
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.51 E-value=3e-14 Score=115.01 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=67.0
Q ss_pred ccccceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 017090 12 DLISLSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 12 ~~~~~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~--~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~ 87 (377)
++.+..+.++.||+++|+.|||+||++||+|+++|||+|+||+.++ +..|+|+|+ .+++++|+++|+.|+.++..
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHHH
Confidence 4566678999999999999999999999999999999999998653 337999998 68999999999999998765
No 10
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.51 E-value=3.3e-14 Score=115.20 Aligned_cols=71 Identities=24% Similarity=0.335 Sum_probs=64.2
Q ss_pred ceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 017090 16 LSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 16 ~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~----~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~ 87 (377)
....++.||+++|+.|||+||++|++|+++|||+|+||+.++ +..|+|+|+ .+++++|+++|+.++.++..
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999999999998653 248999998 89999999999999988654
No 11
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.50 E-value=2.4e-14 Score=117.42 Aligned_cols=69 Identities=23% Similarity=0.401 Sum_probs=62.8
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEeCCHHHHHHHHHHHHHHHHhhh
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 86 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~-~~~v~I~g~~~~~v~~A~~~I~~iv~~~~ 86 (377)
.+.++.||+++||.|||+||++||+|+++|||+|+||+.++ ++.|+|+|+ .+++++|+++|+.++.++.
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL-AANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhhHH
Confidence 47899999999999999999999999999999999998653 358999998 4899999999999998764
No 12
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=3.1e-14 Score=112.07 Aligned_cols=68 Identities=25% Similarity=0.432 Sum_probs=61.6
Q ss_pred ceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 16 LSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 16 ~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
..+..+.||.+++|+|||+||+|||+|+++|||+|+||+.+++..|+|+|. .+++++|+++|+.++..
T Consensus 9 ~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~-~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 9 QTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGM-PENVDRAREEIEAHITL 76 (83)
T ss_dssp SEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEEC-TTTHHHHHHHHHHHHHS
T ss_pred ceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 347899999999999999999999999999999999998766778999997 48999999999997654
No 13
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=107.66 Aligned_cols=68 Identities=28% Similarity=0.414 Sum_probs=59.9
Q ss_pred ceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 16 LSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 16 ~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~-----~~~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
..+..+.||++++|.|||+||+|||+|+++|||+|+|++.+. +..|+|+| +++++++|+++|+.++.+
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHhcC
Confidence 358899999999999999999999999999999999987432 12399999 789999999999998853
No 14
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.38 E-value=1e-12 Score=103.03 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=62.2
Q ss_pred cceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCC---CCCcEEEEeCCHHHHHHHHHHHHHHHHhh
Q 017090 15 SLSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK---KEDSIIIEGNSTDSVAKASEKIQAIIAEA 85 (377)
Q Consensus 15 ~~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~---~~~~v~I~g~~~~~v~~A~~~I~~iv~~~ 85 (377)
+..+.++.||++++|.|||++|++||+|+++|||+|+|++.. .++.|+|+|+ .+++++|+.+|+.++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999998742 1368999995 899999999999999873
No 15
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.36 E-value=7.7e-13 Score=101.96 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=59.2
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~------~~~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
.+..+.||.+++|.|||+||++|++|+++|||+|+|++.++ ++.|+|+|+ .+++.+|+..|+.++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999997531 368999997 78999999999988753
No 16
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.36 E-value=9.4e-13 Score=101.01 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=60.5
Q ss_pred ceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 16 LSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 16 ~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~-~~~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
..+..+.||++++|.|||+||++||+|+++|||+|+|++.+. +..|+|+|+ .+++.+|..+|..++.+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999999999999987532 346999998 89999999999998864
No 17
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.35 E-value=9.1e-13 Score=101.70 Aligned_cols=69 Identities=16% Similarity=0.327 Sum_probs=61.6
Q ss_pred cceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCC---CCCcEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 15 SLSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK---KEDSIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 15 ~~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~---~~~~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
+..+..+.||.+++|.|||+||++|++|+++|||+|+|++.. .++.|+|+|+ .+++.+|+..|+.++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHHc
Confidence 456789999999999999999999999999999999998732 2578999997 89999999999998864
No 18
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=5.1e-13 Score=106.48 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=61.6
Q ss_pred ccceEEEEEeCccccccccCCCchhHHHHHHHhCcE-EEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 14 ISLSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVK-IILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 14 ~~~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~-I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
.+..+.++.||++++|.+|||||++||+|+++||++ |+|.. ++|.|.|+|++.+++++|+++|+.+.+.
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--ddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--DTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--TTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--CCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 345689999999999999999999999999999998 99964 3599999999999999999999866554
No 19
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.33 E-value=1.7e-12 Score=103.92 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=63.4
Q ss_pred ceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 017090 16 LSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 16 ~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~---~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~ 87 (377)
..+.++.||.+++|.|||++|+|||+|+++|||+|+|++... ++.|+|+|+ .+++++|+.+|+.++.+.+.
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhccc
Confidence 347899999999999999999999999999999999987532 358999997 89999999999999988654
No 20
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.33 E-value=1.7e-12 Score=106.26 Aligned_cols=68 Identities=25% Similarity=0.272 Sum_probs=60.6
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCC-----CCCcEEEEeCCHHHHHHHHHHHHHHHHhh
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK-----KEDSIIIEGNSTDSVAKASEKIQAIIAEA 85 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~-----~~~~v~I~g~~~~~v~~A~~~I~~iv~~~ 85 (377)
.+..+.||++++|.|||+||+|||+|+++|||+|+|++.. .++.|+|+|+. +++++|+.+|+.++.+.
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~-~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQ-KEVAAAKHLILEKVSED 87 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEH-HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCH-HHHHHHHHHHHHHHhhC
Confidence 3789999999999999999999999999999999998754 25789999974 58999999999999653
No 21
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.33 E-value=1.3e-12 Score=105.07 Aligned_cols=69 Identities=25% Similarity=0.412 Sum_probs=61.5
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEeCCHHHHHHHHHHHHHHHHhhh
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAEAV 86 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~-----~~~v~I~g~~~~~v~~A~~~I~~iv~~~~ 86 (377)
.+..+.||+++++.|||++|+|||+|+++|||+|+|++.+. +..|+|+| +.+++++|+++|+.++.+..
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 15 AVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp EEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHCCCS
T ss_pred EEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHhccC
Confidence 47899999999999999999999999999999999987532 35599999 67899999999999998744
No 22
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.33 E-value=1.4e-12 Score=103.30 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=62.1
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~------~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~ 87 (377)
.+..+.||.+++|.|||+||++|++|+++|||+|+|++.++ ++.|+|+|+ .+++.+|+..|+.++.+...
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~~ 78 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQG 78 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccc
Confidence 36789999999999999999999999999999999997531 368999997 89999999999999987543
No 23
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=2.4e-12 Score=105.90 Aligned_cols=70 Identities=21% Similarity=0.345 Sum_probs=61.4
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~---~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~ 87 (377)
.+.++.||+++++.|||++|+|||+|+++|+|+|+|++.+. +..|+|+|+ .+++++|+++|+.++.+...
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcccc
Confidence 47899999999999999999999999999999999986432 236999997 89999999999999998655
No 24
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.32 E-value=1.7e-12 Score=101.71 Aligned_cols=69 Identities=17% Similarity=0.327 Sum_probs=60.1
Q ss_pred ceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCC---CCCcEEEEeCCHHHHHHHHHHHHHHHHhh
Q 017090 16 LSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK---KEDSIIIEGNSTDSVAKASEKIQAIIAEA 85 (377)
Q Consensus 16 ~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~---~~~~v~I~g~~~~~v~~A~~~I~~iv~~~ 85 (377)
..+..+.||.+++|.|||+||++|++|+++|||+|+|++.. .++.|+|+|+ .+++++|+..|+.++.+.
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS-AASISLAQYLINARLSSE 76 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHTC--
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999999999999999998732 2468999997 589999999999998764
No 25
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.31 E-value=2e-12 Score=102.92 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=61.2
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCC---CCCcEEEEeCCHHHHHHHHHHHHHHHHhh
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK---KEDSIIIEGNSTDSVAKASEKIQAIIAEA 85 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~---~~~~v~I~g~~~~~v~~A~~~I~~iv~~~ 85 (377)
.+.++.||.+++|.|||++|++||+|+++|||+|+|++.. .++.|+|+|+ .+++++|+.+|+.++.+.
T Consensus 14 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 14 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 4778999999999999999999999999999999998642 2578999997 899999999999999873
No 26
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=2.8e-12 Score=105.57 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=61.3
Q ss_pred cceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEeCCHHHHHHHHHHHHHHHHhh
Q 017090 15 SLSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEA 85 (377)
Q Consensus 15 ~~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~------~~~v~I~g~~~~~v~~A~~~I~~iv~~~ 85 (377)
+..+.++.||.++++.|||++|+|||+|+++|||+|+|++... ++.|+|+| +.+++++|+..|+.++.+.
T Consensus 5 pg~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 5 PGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp --CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCSC
T ss_pred CCCeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhcc
Confidence 3447899999999999999999999999999999999987532 36899999 6899999999999998763
No 27
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.28 E-value=7e-12 Score=102.36 Aligned_cols=68 Identities=29% Similarity=0.480 Sum_probs=62.4
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHH-hCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKE-MGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~e-t~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~ 87 (377)
.+.++.||+.+|++|||+||++||+|+++ ++++|+||+ +++.|+|+|+ ++.|++|+.+|+.++.+.+.
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--~~~~ItI~G~-~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--GEDKITLEGP-TEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--SSCEEEEEEC-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--CCCEEEEECC-HHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999997 599999998 4578999998 78999999999999988654
No 28
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.28 E-value=6e-11 Score=104.04 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=85.8
Q ss_pred EEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEeCCHHHHHHHHHHHHHHHHhhhc-C--CC
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE-S--PS 90 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~----~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~-~--~~ 90 (377)
+..+.||.+++|.|||+||++||+|+++|||+|+|++.+. +..|+|+| +.+++.+|+.+|..++.+... . .-
T Consensus 4 ~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-~~e~v~~A~~~I~~~~~e~~~~~~~~~ 82 (163)
T 3krm_A 4 MVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG-PPEAQFKAQGRIYGKLKEENFFGPKEE 82 (163)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHTTSSCSSCC
T ss_pred EEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhcccccccccC
Confidence 6789999999999999999999999999999999987532 34599999 589999999999999876421 0 01
Q ss_pred CCceeEEEeccccchhhhccHHHHHHHHhccc
Q 017090 91 LDYSHFVSLPLAVHPELVDKLVNFQNTILGIT 122 (377)
Q Consensus 91 ~~~~~fv~~Pl~~~p~I~~~~~~f~~~Il~~~ 122 (377)
...+.-+.+|-..+..|+|+.+...+.|.+..
T Consensus 83 ~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~t 114 (163)
T 3krm_A 83 VKLETHIRVPASAAGRVIGKGGKTVNELQNLT 114 (163)
T ss_dssp CCEEEEEEEETTTHHHHHCGGGHHHHHHHHHH
T ss_pred CceEEEEEcChhheeeEEcCCChHHHHHHHHh
Confidence 12455677898889999999999999998663
No 29
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=6.4e-12 Score=107.04 Aligned_cols=68 Identities=24% Similarity=0.388 Sum_probs=61.0
Q ss_pred eEEEEEeCcc------ccccccCCCchhHHHHHHHhCcEEEcCCCC-------------------CCCcEEEEeCCHHHH
Q 017090 17 SVLDMQVGAS------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------------KEDSIIIEGNSTDSV 71 (377)
Q Consensus 17 ~~~~i~Vp~~------~~~~iIG~~G~tik~ie~et~~~I~ip~~~-------------------~~~~v~I~g~~~~~v 71 (377)
-...+.||.+ |+|.||||+|+|+|+|++||||+|.|...+ +++.|.|+|++.+++
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~ 86 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENV 86 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHH
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHH
Confidence 3678999998 899999999999999999999999996532 267899999999999
Q ss_pred HHHHHHHHHHHHh
Q 017090 72 AKASEKIQAIIAE 84 (377)
Q Consensus 72 ~~A~~~I~~iv~~ 84 (377)
++|+++|+.|+..
T Consensus 87 ~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 87 KKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999865
No 30
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=102.49 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=59.5
Q ss_pred EEEEEeCcc-------ccccccCCCchhHHHHHHHhCcEEEcCCCC-------------CCCcEEEEeCCHHHHHHHHHH
Q 017090 18 VLDMQVGAS-------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------KEDSIIIEGNSTDSVAKASEK 77 (377)
Q Consensus 18 ~~~i~Vp~~-------~~~~iIG~~G~tik~ie~et~~~I~ip~~~-------------~~~~v~I~g~~~~~v~~A~~~ 77 (377)
...+.||.+ ++|.||||+|+|+|+|++||||+|+|..++ +++.|.|+|.+.+++++|+++
T Consensus 13 ~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~ 92 (119)
T 2yqr_A 13 QDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKL 92 (119)
T ss_dssp EEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHH
T ss_pred EEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHH
Confidence 456667664 899999999999999999999999996332 347899999999999999999
Q ss_pred HHHHHHhhh
Q 017090 78 IQAIIAEAV 86 (377)
Q Consensus 78 I~~iv~~~~ 86 (377)
|+.|+.++.
T Consensus 93 Ie~Ll~~v~ 101 (119)
T 2yqr_A 93 CENLLQTVH 101 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhchH
Confidence 999998753
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=1e-10 Score=102.30 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=86.7
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEeCCHHHHHHHHHHHHHHHHhhhcC-------
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVES------- 88 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~-~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~~------- 88 (377)
....+.||.+++|.|||+||++||+|+++|||+|+|++.+. +..|+|+|+ .+++.+|+..|..++.+....
T Consensus 5 ~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e~~~~~~~~~~~ 83 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEEDISSSMTNSTA 83 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHHHHHHHHHHHHTSCCCSSSC
T ss_pred EEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhhccccCCCCcc
Confidence 47789999999999999999999999999999999987532 357999997 789999999999887663211
Q ss_pred -CCCCceeEEEeccccchhhhccHHHHHHHHhcc
Q 017090 89 -PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 121 (377)
Q Consensus 89 -~~~~~~~fv~~Pl~~~p~I~~~~~~f~~~Il~~ 121 (377)
...+.+..+.+|-+.+..|+|+.+...+.|.+.
T Consensus 84 ~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~ 117 (160)
T 2jzx_A 84 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 117 (160)
T ss_dssp CCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred CCCCCEEEEEEEChhheeeEECCCCHHHHHHHHH
Confidence 012356777889888899999999999999766
No 32
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.17 E-value=7.3e-11 Score=104.74 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=86.7
Q ss_pred ceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEeCCHHHHHHHHHHHHHHHHhhhcCCC--
Q 017090 16 LSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVESPS-- 90 (377)
Q Consensus 16 ~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~---~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~~~~-- 90 (377)
..+..+.||.+++|.|||++|++||+|+++|||+|+|++... +..|+|+|+ .+++.+|+..|..++.+......
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~~~~~~~~ 80 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEIITDLLRSVQAGNPGG 80 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHHHHHHHHHC------
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhcccCCCCC
Confidence 356889999999999999999999999999999999975321 357899997 78999999999999987532100
Q ss_pred ---------------------CCceeEEEeccccchhhhccHHHHHHHHhcccc
Q 017090 91 ---------------------LDYSHFVSLPLAVHPELVDKLVNFQNTILGITD 123 (377)
Q Consensus 91 ---------------------~~~~~fv~~Pl~~~p~I~~~~~~f~~~Il~~~~ 123 (377)
...+..+.+|-.....|+++.+...+.|.+...
T Consensus 81 ~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tg 134 (174)
T 1j4w_A 81 PGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSG 134 (174)
T ss_dssp -----------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHC
Confidence 012556778988889999999999999987643
No 33
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-10 Score=102.27 Aligned_cols=105 Identities=21% Similarity=0.272 Sum_probs=85.1
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEeCCHHHHHHHHHHHHHHHHhhhcCC--
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP-- 89 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~-----~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~~~-- 89 (377)
.+..+.||++++|.|||+||++||+|+++|||+|+|++.+. +..|+|+| +.+++.+|+..|..++.+.....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEE-CHHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHhccCCCCC
Confidence 36789999999999999999999999999999999976431 34799999 57899999999999988643210
Q ss_pred -------CCCceeEEEeccccchhhhccHHHHHHHHhccc
Q 017090 90 -------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGIT 122 (377)
Q Consensus 90 -------~~~~~~fv~~Pl~~~p~I~~~~~~f~~~Il~~~ 122 (377)
....+.-+.+|-..+..|+|+.+...+.|.+..
T Consensus 81 ~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~t 120 (164)
T 2jvz_A 81 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDA 120 (164)
T ss_dssp SCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHT
T ss_pred CccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHH
Confidence 001235567888888999999999999998764
No 34
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.09 E-value=9.9e-11 Score=115.52 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=61.0
Q ss_pred cccceEEEEEeCccccccccCCCc--hhHHHHHHHhCcEEEcCCCC--------CCCcEEEEeCCHHHHHHHHHHHHHH
Q 017090 13 LISLSVLDMQVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSK--------KEDSIIIEGNSTDSVAKASEKIQAI 81 (377)
Q Consensus 13 ~~~~~~~~i~Vp~~~~~~iIG~~G--~tik~ie~et~~~I~ip~~~--------~~~~v~I~g~~~~~v~~A~~~I~~i 81 (377)
+.++.+.++.||+.+|++|||+|| ++|++|.+||||+|+||.++ .+..|+|+|. .++|++|+.+|.++
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~-~enVE~AR~~I~~l 103 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY-FGDVDRARMLMRRN 103 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE-HHHHHHHHHHHHHS
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC-HHHHHHHHHHHHhc
Confidence 356668999999999999999999 99999999999999999865 1457999997 78999999999874
No 35
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.07 E-value=2.1e-10 Score=100.52 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=61.4
Q ss_pred EEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CC--cEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---ED--SIIIEGNSTDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~---~~--~v~I~g~~~~~v~~A~~~I~~iv~~~~~ 87 (377)
...+.||++++|.|||+||++|++|+++|||+|+|++.+. .+ .|+|+| +.+++..|+.+|..++.+++.
T Consensus 86 ~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 86 ETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999987532 11 689999 589999999999999998765
No 36
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.05 E-value=2.9e-10 Score=101.16 Aligned_cols=106 Identities=22% Similarity=0.245 Sum_probs=86.3
Q ss_pred ceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEeCCHHHHHHHHHHHHHHHHhhhcC-
Q 017090 16 LSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAVES- 88 (377)
Q Consensus 16 ~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~------~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~~- 88 (377)
.....+.||.+++|.|||+||++||+|+++|||+|+|++.++ +..|+|+|. .+++.+|+..|..++.+....
T Consensus 5 ~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~~~~~~ 83 (178)
T 2anr_A 5 QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIREMPQNV 83 (178)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTCCCCC-
T ss_pred CEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhccCCcc
Confidence 457899999999999999999999999999999999986432 246899996 789999999999988653210
Q ss_pred ----------------CCCCceeEEEeccccchhhhccHHHHHHHHhccc
Q 017090 89 ----------------PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGIT 122 (377)
Q Consensus 89 ----------------~~~~~~~fv~~Pl~~~p~I~~~~~~f~~~Il~~~ 122 (377)
.....+.-+.+|-..+..|+|+.+...+.|.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~t 133 (178)
T 2anr_A 84 AKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQS 133 (178)
T ss_dssp ----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHS
T ss_pred ccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHH
Confidence 0011456777898888999999999999998764
No 37
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=101.42 Aligned_cols=68 Identities=22% Similarity=0.352 Sum_probs=61.5
Q ss_pred EEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEeCCHHHHHHHHHHHHHHHHhhh
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAV 86 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~---~~~v~I~g~~~~~v~~A~~~I~~iv~~~~ 86 (377)
...+.||++++|.|||++|++|++|+++|||+|+|++.+. ++.|+|+|+ .+++..|+..|+.++.+++
T Consensus 92 ~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 92 GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp SBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC-HHHHHHHHHHHHHHHhhhh
Confidence 4788999999999999999999999999999999987543 468999997 8899999999999998865
No 38
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=4e-10 Score=98.46 Aligned_cols=67 Identities=24% Similarity=0.357 Sum_probs=60.0
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCC----CCCcEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK----KEDSIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~----~~~~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
....+.||.+++|.|||+||++|++|+++|||+|+|++.. .++.|+|+| +.+++.+|+..|..++.+
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999998632 257899999 589999999999998865
No 39
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.96 E-value=8.5e-11 Score=124.89 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=13.8
Q ss_pred EEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHhhhc--------CC
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVE--------SP 89 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~--------~~ 89 (377)
+.+++||+++|+.||||||+|||+|+++||++|+|.. +|.|.|.+.+++++++|+++|+.++.+... .+
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d---dG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~ 647 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND---DGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVK 647 (726)
T ss_dssp ----------------------------------------------CCSCHHHHHHHHHC--------------------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC---CceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEE
Confidence 7899999999999999999999999999999999974 799999999999999999999999987643 24
Q ss_pred CCCceeEEEec
Q 017090 90 SLDYSHFVSLP 100 (377)
Q Consensus 90 ~~~~~~fv~~P 100 (377)
+.+|+.||.|.
T Consensus 648 I~~fGaFVel~ 658 (726)
T 4aid_A 648 VVDFGAFVNFF 658 (726)
T ss_dssp -----------
T ss_pred EeccEEEEEEC
Confidence 77899999985
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.94 E-value=3.9e-10 Score=118.51 Aligned_cols=62 Identities=26% Similarity=0.267 Sum_probs=57.8
Q ss_pred EEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHH
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 82 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv 82 (377)
+.+++||+++||.||||||+|||+|+++|||+|+|.. +|.|.|.|++.+.+++|+++|+.|+
T Consensus 568 ~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d---~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 568 VETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD---EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred EEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999974 7999999999999999999998876
No 41
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.94 E-value=7.4e-10 Score=98.21 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=57.7
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCC------CCCcEEEEeCCHHHHHHHHHHHHHHH
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK------KEDSIIIEGNSTDSVAKASEKIQAII 82 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~------~~~~v~I~g~~~~~v~~A~~~I~~iv 82 (377)
....+.||.+++|.|||++|++||+|+++|||+|+|++.. .++.|+|+| +.+++..|+..|+.++
T Consensus 104 ~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 104 QEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred EEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 4778999999999999999999999999999999998742 136899999 5899999999998764
No 42
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.93 E-value=7.6e-10 Score=98.41 Aligned_cols=67 Identities=25% Similarity=0.322 Sum_probs=60.0
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~-----~~~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
....+.||.+++|.|||+||++||+|+++|||+|+|++... ++.|+|+|. .+++.+|+..|..++.+
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGE-PEQNRKAVELIIQKIQE 175 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESS-HHHHHHHHHHHHHHHHS
T ss_pred eEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999987532 368999997 58999999999998865
No 43
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.91 E-value=1.4e-09 Score=100.25 Aligned_cols=63 Identities=27% Similarity=0.303 Sum_probs=59.3
Q ss_pred EEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCC----HHHHHHHHHHHHHHH
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNS----TDSVAKASEKIQAII 82 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~----~~~v~~A~~~I~~iv 82 (377)
+.++.||++++|.|||+||++++.|+++|||+|+|+. ++|.|.|+|++ .+++++|++.|.+++
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--ETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--TTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 7799999999999999999999999999999999985 37899999976 899999999999999
No 44
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.79 E-value=5.5e-09 Score=89.57 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=52.9
Q ss_pred EEEEEeCcc------ccccccCCCchhHHHHHHHhCcEEEcCCCCC----------CC-----------cEEEEeCCHH-
Q 017090 18 VLDMQVGAS------VIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----------ED-----------SIIIEGNSTD- 69 (377)
Q Consensus 18 ~~~i~Vp~~------~~~~iIG~~G~tik~ie~et~~~I~ip~~~~----------~~-----------~v~I~g~~~~- 69 (377)
...|.||.+ |+|.||||+|+|+|+||++|||+|.|-.+++ .| .|.|+|.+.+
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 345677754 5899999999999999999999999986552 01 7899997664
Q ss_pred ----HHHHHHHHHHHHHH
Q 017090 70 ----SVAKASEKIQAIIA 83 (377)
Q Consensus 70 ----~v~~A~~~I~~iv~ 83 (377)
.+++|++.|+.++.
T Consensus 83 ~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHCC
Confidence 78888888887764
No 45
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.75 E-value=8.5e-09 Score=89.06 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=57.4
Q ss_pred EEEEeCccccccccCCCchhHHHHHHHhCc-EEEcCCCCCC------C--cEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 19 LDMQVGASVIRFIKGKEGSTQKKFEKEMGV-KIILPSSKKE------D--SIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 19 ~~i~Vp~~~~~~iIG~~G~tik~ie~et~~-~I~ip~~~~~------~--~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
..+.||.+.+|.+||++|.|+|.|.+.||+ +|+|++.++. + .|+|+|+ .++++.|+..|+.++.+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~-~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGT-KDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEE-HHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999996 9999875432 2 3789996 78999999999998875
No 46
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.56 E-value=5.7e-08 Score=95.86 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=55.6
Q ss_pred ceEEEEEeCccccccccCCCc--hhHHHHHHHhCcEEEcCCCCC-------CCcEEEEeCCHHHHHHHHHHHHHHH
Q 017090 16 LSVLDMQVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSKK-------EDSIIIEGNSTDSVAKASEKIQAII 82 (377)
Q Consensus 16 ~~~~~i~Vp~~~~~~iIG~~G--~tik~ie~et~~~I~ip~~~~-------~~~v~I~g~~~~~v~~A~~~I~~iv 82 (377)
....++.|++..|++|||++| .+|++|.++|||+|++|+.++ ...|+|+|. .++|..|+++|..++
T Consensus 185 ~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs-~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 185 NFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGN-IDNVLKARRYIMDLL 259 (376)
T ss_dssp CEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESC-HHHHHHHHHHHHHTS
T ss_pred ceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeC-HHHHHHHHHHHHhhC
Confidence 458899999999999999998 677999999999999997643 236999995 899999999999765
No 47
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.38 E-value=4e-08 Score=104.71 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHhhhc--------CC
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVE--------SP 89 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~--------~~ 89 (377)
+.+++||+++++.+|||||+||++|.++||+.|+|.. +|.|.|.+.+.+.+.+|+++|+.++.+... .+
T Consensus 561 ~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~ 637 (723)
T 3cdi_A 561 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTR 637 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEECHHHhcccccccceeeeeeehhhCceEEecC---CccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEE
Confidence 7899999999999999999999999999999999975 699999999999999999999999876532 24
Q ss_pred CCCceeEEEec
Q 017090 90 SLDYSHFVSLP 100 (377)
Q Consensus 90 ~~~~~~fv~~P 100 (377)
+.+||.||.|.
T Consensus 638 i~~fGaFVel~ 648 (723)
T 3cdi_A 638 IVDFGAFVAIG 648 (723)
T ss_dssp -----------
T ss_pred EecceEEEEeC
Confidence 77899999985
No 48
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.26 E-value=2.7e-08 Score=106.50 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=35.0
Q ss_pred EEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHH--Hhhhc--------
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII--AEAVE-------- 87 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv--~~~~~-------- 87 (377)
+.+++||+++|+.+||+||++||+|.++||+.|+|.. +|.|.|.+.+.+..++|+++|+.++ .+...
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~V 675 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---DGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSV 675 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC-----------CCCBSSHHHHCC---------------------CBE
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---CceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEEE
Confidence 6789999999999999999999999999999999974 6999999999999999999999988 44322
Q ss_pred CCCCCceeEEEec
Q 017090 88 SPSLDYSHFVSLP 100 (377)
Q Consensus 88 ~~~~~~~~fv~~P 100 (377)
.++.+|+.||.|.
T Consensus 676 ~~i~~fGaFV~l~ 688 (757)
T 1e3p_A 676 VKTTTFGAFVSLL 688 (757)
T ss_dssp EECC-CSCEECCC
T ss_pred EEccccEEEEEEc
Confidence 2477899999994
No 49
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.17 E-value=2.3e-06 Score=73.67 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=73.1
Q ss_pred ceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHhhhcCCCCCcee
Q 017090 16 LSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYSH 95 (377)
Q Consensus 16 ~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~~~~~~~~~ 95 (377)
....++.||.+.+|.+||+||++|++|++++|+.|...+ ++...+.+.|.+++.|.+|+..+. . ...
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~-~~~~~~i~~~~~p~~v~~~~~~l~-------~-----~e~ 69 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD-EDTCTFHIYGEDQDAVKKARSFLE-------F-----AED 69 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHC-------E-----EEE
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC-CCchheeeccCCHHHHHHHHHhhh-------c-----ceE
Confidence 457889999999999999999999999999995443332 234668888988889988876321 1 136
Q ss_pred EEEeccccchhhhccHHHHHHHHhcc
Q 017090 96 FVSLPLAVHPELVDKLVNFQNTILGI 121 (377)
Q Consensus 96 fv~~Pl~~~p~I~~~~~~f~~~Il~~ 121 (377)
.|.+|-..+..++|+.+...+.+.+.
T Consensus 70 ~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 70 VIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEECHHHcCeeECCCCHHHHHHHHH
Confidence 67789888899999999999988765
No 50
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.16 E-value=1.7e-06 Score=79.67 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=48.5
Q ss_pred ccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 27 VIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 27 ~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
..|.|||++|+|++.||+.|||+|.|+. ..|.|.|+ .++++.|++.|..++..
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~----~~v~i~G~-~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG----KTVAIIGN-PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET----TEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC----eEEEEEeC-HHHHHHHHHHHHHHHcC
Confidence 5889999999999999999999999974 67999996 78999999999999965
No 51
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.14 E-value=3.3e-06 Score=76.03 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=57.5
Q ss_pred EEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEe----CCHHHHHHHHHHHHHHHHh
Q 017090 19 LDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEG----NSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 19 ~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g----~~~~~v~~A~~~I~~iv~~ 84 (377)
..+.||+..+|.|||++|++++.|++++||+|+|.. .++.|+|+. .++..+.+|++.|.++...
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rg 73 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLG 73 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHT
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999999975 368899982 3678999999999999864
No 52
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.91 E-value=1e-05 Score=72.88 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=48.4
Q ss_pred cccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 26 SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 26 ~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
...|.|||++|+|++.||+-|||+|.|.. ..|.|.|+ .++++.|+..|+.++..
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----~~v~i~G~-~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE----YEVAIIGD-YERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS----SEEEEEEE-HHHHHHHHHHHHHHHTT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC----CEEEEEeC-hHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999999974 48999996 68999999999999853
No 53
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.76 E-value=5.3e-05 Score=63.99 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=61.0
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~--~~~v~I~g~~~~~v~~A~~~I~~iv~~~~~ 87 (377)
..+.+.|.....+.|+|++|+.|+.||..++|.|++.+-+. ...|+|.|+ ...-.+|+..|..+.+--++
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~-~~~Q~rak~MI~sLA~~hr~ 127 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP-PPFRRDVDRMLTDLAHYCRM 127 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECC-HHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999987655 347999997 56888999999999876544
No 54
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=97.05 E-value=0.0055 Score=56.95 Aligned_cols=135 Identities=12% Similarity=0.051 Sum_probs=79.5
Q ss_pred ccCCCcceEEeeccccCC-------------HHHHHHHHHHHHHhHHHhhhhcCCCCeEEEEccccCCCCCCCCceEEEE
Q 017090 199 FIKPKTFHLTVLMLKLWN-------------KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYA 265 (377)
Q Consensus 199 ~v~p~~LHLTL~fLgl~~-------------~~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l~Gl~~F~~dp~~~rVLya 265 (377)
|+||+.+|+||.=+--.. +..++.+.+.+.+. +...-...||.+.+.|+. +. -|..+
T Consensus 77 ~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d~~l~~~~~~~~~~---l~~~~~~~p~~~~v~~l~--~~-----~v~L~ 146 (243)
T 2fsq_A 77 FTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRDR---LSTFPTLPAFNMRVTGLR--PV-----GMVMK 146 (243)
T ss_dssp ECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHHH---GGGCCCCCCCCEEEEEEE--TT-----EEEEE
T ss_pred eCCchhhhhhhccccccccccCCCCCccCcccchHHHHHHHHHHH---HhcccCCCCeEEEEeccc--cc-----eEEEe
Confidence 899999999997643311 34566665555532 222222378999999993 22 45555
Q ss_pred eeeccCChhHHHHHHHHHHHHHHHCCCcccccCCCCeeeeEEeeeecccccccCCCccccccHHHHHHHhCC---Ccccc
Q 017090 266 PVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGS---KEWGE 342 (377)
Q Consensus 266 ~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~~~r~fkpHiTL~r~~~~~~~~~~~~~~~fda~~il~~~~~---~~fG~ 342 (377)
+..+ .+...|.++-+.|.+ ..|+... +...|+.||||+....+.... ..-..+.+++++.. -..+.
T Consensus 147 Pade-~~~~~L~~~R~~l~q---~lGi~~p--~hd~y~fHITLgY~~~~l~~e-----e~~~~~~~l~~~~~~l~~~~p~ 215 (243)
T 2fsq_A 147 GATA-EDDSIVALWRDTFAD---FFGYRHP--DHDTYEFHITLSYIVSWFEPE-----CLPRWQAMLDEELEKLRVAAPV 215 (243)
T ss_dssp ESSH-HHHHHHHHHHHHHHH---HHTCCCT--TGGGCCEEEECEEESSCBCGG-----GHHHHHHHHHHHHHHHHHHCSS
T ss_pred cCCH-HHHHHHHHHHHHHHH---HhCCCCC--CCcceEEEEEEEeccCCCCHH-----HHHHHHHHHHHHHHHHHhhCCe
Confidence 5543 234566666555554 4688764 267899999999876432210 00112233333322 12345
Q ss_pred EEecEEEEEeee
Q 017090 343 YLIKEAHLSQRF 354 (377)
Q Consensus 343 ~~v~~I~Ls~~~ 354 (377)
+.+....+|.-.
T Consensus 216 i~l~~~efc~F~ 227 (243)
T 2fsq_A 216 IQMRPPAFCEFK 227 (243)
T ss_dssp CCBCCCEEEEES
T ss_pred eeecCcceEEeC
Confidence 678888888753
No 55
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=91.49 E-value=0.51 Score=43.27 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=53.7
Q ss_pred EEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHh
Q 017090 19 LDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 84 (377)
Q Consensus 19 ~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~~ 84 (377)
..+.|++.+++.++|++|..+..|.+.+++.|-+-. +|-|.|.+.+......+...|..+=.+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~---NG~IWi~~~~~~~~~~~~~ai~~~e~~ 212 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR---NGRIHLECPNEDLEAIAVMAIKIIDEE 212 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET---TTEEEEECSCHHHHHHHHHHHHHHHHC
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC---CCEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 567999999999999999999999999999999954 899999998877777777777655433
No 56
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=90.31 E-value=0.0049 Score=54.69 Aligned_cols=75 Identities=11% Similarity=0.039 Sum_probs=48.0
Q ss_pred EEEEEeCccccccccCCCchhHHHH-HHHh--------Cc---EEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHhh
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKF-EKEM--------GV---KIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA 85 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~i-e~et--------~~---~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~~~ 85 (377)
..+++||++++|.+|| ++|+++ .++| |+ .|+|.. .|.+.|.+.+.+... ..+++.++.++
T Consensus 8 ~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~---~g~~~I~~~d~~~~~--~~~~~~i~~~~ 79 (187)
T 1go3_E 8 ADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD---IGEGKVVHGDGSAYH--PVVFETLVYIP 79 (187)
T ss_dssp EEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE---ECCCBCCTTCCSEEE--EEEEEEEEECC
T ss_pred EEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee---ccCCEEeCCCccEEE--EEEEEEEEEcc
Confidence 4589999999999999 799995 9999 88 678764 344444433322221 22333333332
Q ss_pred hc--------CCCCCceeEEEec
Q 017090 86 VE--------SPSLDYSHFVSLP 100 (377)
Q Consensus 86 ~~--------~~~~~~~~fv~~P 100 (377)
.. .+..+++.||+|.
T Consensus 80 ~~Gev~~G~V~~v~~~G~fV~l~ 102 (187)
T 1go3_E 80 EMYELIEGEVVDVVEFGSFVRLG 102 (187)
T ss_dssp CTTCEEEEEEEEEETTEEEEECS
T ss_pred CCCCEEEEEEEEEeCcEEEEEEc
Confidence 21 2366799999984
No 57
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=88.53 E-value=0.77 Score=41.95 Aligned_cols=59 Identities=25% Similarity=0.380 Sum_probs=47.8
Q ss_pred EEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHH
Q 017090 19 LDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 81 (377)
Q Consensus 19 ~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~i 81 (377)
.-+.+++.+++.++|++|..+..|.+.++|.|-+- .+|-|.|.+.+. ....+...|..+
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG---~NG~IWi~~~~~-~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG---QNGLIWVNGDRR-KVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC---TTSEEEEESCHH-HHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE---CCcEEEEeCCch-hHHHHHHHHHHH
Confidence 55789999999999999999999999999999995 489999997643 555555555443
No 58
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=88.52 E-value=0.42 Score=42.02 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=49.6
Q ss_pred EEEEeCccccccccCCCch-hHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHH
Q 017090 19 LDMQVGASVIRFIKGKEGS-TQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 80 (377)
Q Consensus 19 ~~i~Vp~~~~~~iIG~~G~-tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~ 80 (377)
.-++||+.+++.++|++|. +++.|.+.+++.|-+-. +|-|.|.+.+......+...|+.
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~---NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGL---NGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEET---TTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEEC---CcEEEEecCCHHHHHHHHHHHHH
Confidence 4688999999999998888 99999999999999954 89999999877666655566655
No 59
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=85.33 E-value=0.6 Score=39.76 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=33.3
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcC
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 53 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip 53 (377)
....+-|+...+|..||++|+.++.|+++.|-+|+|=
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 4567788888999999999999999999999999884
No 60
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=82.99 E-value=0.36 Score=45.82 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=50.4
Q ss_pred EEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHH
Q 017090 19 LDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 81 (377)
Q Consensus 19 ~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~i 81 (377)
.-++||+.+++.++|+++..++.|.+.+++.|-+-. +|-|.|.+.+......+...|..+
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG~---NG~IWI~~~~~~~~~~i~~aI~~~ 271 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGM---NGRIWVKAKTIQQTLILANILEAC 271 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEET---TTEEEECCSSHHHHHHHHHHHHHT
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEEEC---CcEEEEecCChhHHHHHHHHHHHh
Confidence 468999999999999999999999989999999954 899999998776666666656543
No 61
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=80.90 E-value=0.22 Score=46.32 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=40.6
Q ss_pred EEEEeCccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHH
Q 017090 19 LDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQ 79 (377)
Q Consensus 19 ~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~ 79 (377)
..+.+++.+++.++|++|..+..|.+.++|.|-+-. +|-|.|.+.+......+...|.
T Consensus 157 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~---NG~IWi~~~~~~~~~~~~~aI~ 214 (251)
T 2je6_I 157 IVIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVAN---NGRIWATCPSRFSEEILIEAIR 214 (251)
T ss_dssp CEEECCGGGHHHHHCGGGHHHHHHHTTC---CEECT---TSEEEC-----CTTCCTHHHHT
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEEC---CcEEEEeCCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999999954 8999999876545544444443
No 62
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=79.75 E-value=0.0062 Score=53.39 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=46.0
Q ss_pred cceeccccceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcC--CCCCCCcEEEEeCCHHHHHHHHHHHHHHHHhh
Q 017090 8 PKFIDLISLSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILP--SSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA 85 (377)
Q Consensus 8 ~~~~~~~~~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip--~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~~~ 85 (377)
|..+..---...+.+|++++++.+||++|.++ +.++|. .- .+|.|. +.+ ....|+.+++.++.++
T Consensus 15 p~~l~~~~p~~i~~~i~~~~i~~vig~~G~~I--------~~~di~~~di-~~g~i~--~~d--~~~~~~~~~~~~~~~~ 81 (171)
T 1y14_B 15 PSFFGPRMKQYLKTKLLEEVEGSCTGKFGYIL--------CVLDYDNIDI-QRGRIL--PTD--GSAEFNVKYRAVVFKP 81 (171)
T ss_dssp TTSCSTTHHHHHHHHHHHHHTTEEETTTEEEE--------EECCGGGCBC-C----------------CEEEEEEEEECC
T ss_pred HHHhCChHHHHHHHHHHHHHcCcCcCCceEEE--------EEEEeccccc-CccEEe--CCC--CCEEEEEEEEEEEccC
Confidence 44444333446788899999999999999999 577776 31 134443 322 3344445555555443
Q ss_pred hc--------CCCCCceeEEEec
Q 017090 86 VE--------SPSLDYSHFVSLP 100 (377)
Q Consensus 86 ~~--------~~~~~~~~fv~~P 100 (377)
.. ++...||.||+|.
T Consensus 82 ~~Gev~~G~V~~v~~fG~FV~l~ 104 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQHGFEVQVG 104 (171)
T ss_dssp CTTCEEEEEEEEEETTEEEEEET
T ss_pred CCCCEEEEEEEEEecCEEEEEec
Confidence 22 2366799999984
No 63
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=75.87 E-value=0.66 Score=39.46 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=34.9
Q ss_pred cceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcC
Q 017090 15 SLSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 53 (377)
Q Consensus 15 ~~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip 53 (377)
......+.||.+..+..||++|.++|-..+=||.+|+|-
T Consensus 101 ~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 101 GVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp TEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred CcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 345678899999999999999999999999999999884
No 64
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=68.77 E-value=3.4 Score=38.23 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=35.5
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCC
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPS 54 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~ 54 (377)
....+.||.+..+.-||++|.++|---.-||.+|+|-+
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 47789999999999999999999999999999999965
No 65
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=67.39 E-value=2.7 Score=36.00 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=27.1
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhC
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMG 47 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~ 47 (377)
..+.+.|..+-.|.|||+.|.|+..|+-=++
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 3678888999999999999999999987664
No 66
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=64.43 E-value=3.5 Score=40.25 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=38.2
Q ss_pred ceeccccceEEEEEeCc-----cccccccCCCchhHHHHHHHh-CcEEEcCC
Q 017090 9 KFIDLISLSVLDMQVGA-----SVIRFIKGKEGSTQKKFEKEM-GVKIILPS 54 (377)
Q Consensus 9 ~~~~~~~~~~~~i~Vp~-----~~~~~iIG~~G~tik~ie~et-~~~I~ip~ 54 (377)
+-|+|.+++...|-|-+ +-+|..||++|..++.|.++. |-+|+|=.
T Consensus 227 k~iARepG~RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 227 VAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp EEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEecCCCeEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 45788888877777744 669999999999999999998 88888843
No 67
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=61.19 E-value=5.6 Score=38.81 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=35.9
Q ss_pred ceEEEEEeCccccccccCCCchhHHHHHHHhCcEEEcCC
Q 017090 16 LSVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIILPS 54 (377)
Q Consensus 16 ~~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~ip~ 54 (377)
.....+.||.+..+..||++|.++|-.-+=||.+|+|-+
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 457889999999999999999999999999999999965
No 68
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=56.04 E-value=3.8 Score=33.25 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=38.0
Q ss_pred CCCchhHHHHHHHhCcEEEcCCC-------------------CCCCcEEEEeC----CHHHHHHHHHHHHHHHHhhhc
Q 017090 33 GKEGSTQKKFEKEMGVKIILPSS-------------------KKEDSIIIEGN----STDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 33 G~~G~tik~ie~et~~~I~ip~~-------------------~~~~~v~I~g~----~~~~v~~A~~~I~~iv~~~~~ 87 (377)
||||-++++-+..-..++++|.. ..+|.|+|.+. ...+.+.|++++..++.++..
T Consensus 31 GpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 108 (112)
T 1j26_A 31 GPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp CSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHHHHHHHHHHHHHHHHhhc
Confidence 99998887743322223366653 12577999883 457889999999999988654
No 69
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=53.87 E-value=5.6 Score=30.98 Aligned_cols=29 Identities=10% Similarity=0.207 Sum_probs=22.2
Q ss_pred EEEEEeCccccccccCCCchhHHHHHHHh
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEM 46 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~ie~et 46 (377)
...+.|-..+-|.|||++|+.+++|..+-
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 45666667788999999999888765543
No 70
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=50.56 E-value=7.8 Score=35.81 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=34.7
Q ss_pred ceeccccceEEEEEeCc-----cccccccCCCchhHHHH-HHHhCcEEEcCC
Q 017090 9 KFIDLISLSVLDMQVGA-----SVIRFIKGKEGSTQKKF-EKEMGVKIILPS 54 (377)
Q Consensus 9 ~~~~~~~~~~~~i~Vp~-----~~~~~iIG~~G~tik~i-e~et~~~I~ip~ 54 (377)
+-|+|.+++.-.+-|-+ +-+|.-||++|..++.| .+-.|-+|+|=.
T Consensus 104 ~~iaRe~G~R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 155 (251)
T 2asb_A 104 VAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 155 (251)
T ss_dssp EEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred EEEecCCCceeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEE
Confidence 45788888755555433 56899999999999999 455688888743
No 71
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=48.45 E-value=12 Score=30.10 Aligned_cols=54 Identities=19% Similarity=0.386 Sum_probs=39.1
Q ss_pred cCCCchhHHHHHHHhCcEEE-------cCC------------C-CCCCcEEEEeC----CHHHHHHHHHHHHHHHHhhhc
Q 017090 32 KGKEGSTQKKFEKEMGVKII-------LPS------------S-KKEDSIIIEGN----STDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 32 IG~~G~tik~ie~et~~~I~-------ip~------------~-~~~~~v~I~g~----~~~~v~~A~~~I~~iv~~~~~ 87 (377)
=||||-.+++- +|.+++. +|. . ..+|.|+|++. ...+.+.|.+++.+++.++..
T Consensus 23 sGpGGQnVNKv--~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 100 (108)
T 2jva_A 23 QGAGGQNVNKV--SSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRADALLRLSELIVNAAK 100 (108)
T ss_dssp TTCSSSSSCCC--CCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCC--cceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHcc
Confidence 49999988873 5666666 441 0 01577899883 456889999999999988765
No 72
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=48.40 E-value=52 Score=26.90 Aligned_cols=63 Identities=11% Similarity=0.233 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcCCCCeEEEEccccCCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 017090 217 KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 294 (377)
Q Consensus 217 ~~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l~Gl~~F~~dp~~~rVLya~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~ 294 (377)
.+-+..+.++|.+-+ ...-..|.++|+..+-+ |.-+....+...++.+++.|.+.+.+.|..+
T Consensus 4 ~~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIatg~S~rqv~Aiad~v~~~lk~~g~~~ 66 (125)
T 2o5a_A 4 QELLQLAVNAVDDKK-------AEQVVALNMKGISLIAD--------FFLICHGNSEKQVQAIAHELKKVAQEQGIEI 66 (125)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEECBTTBC--C--------EEEEEEESSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcC-------CCCeEEEEcCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 344555666666543 22446788899998876 4434333346789999999999999998764
No 73
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=44.28 E-value=70 Score=26.35 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhHHHhhhhcCCCCeEEEEccccCCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 017090 218 DRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 294 (377)
Q Consensus 218 ~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l~Gl~~F~~dp~~~rVLya~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~ 294 (377)
+-++.+.++|.+-+ ...-..|.++|+..+-+ |.-+....+...++.+++.|.+.+.+.|+.+
T Consensus 5 ~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIaTg~S~rqv~Aiad~v~~~lk~~g~~~ 66 (130)
T 2id1_A 5 EISKLAIEALEDIK-------GKDIIELDTSKLTSLFQ--------RMIVATGDSNRQVKALANSVQVKLKEAGVDI 66 (130)
T ss_dssp HHHHHHHHHHHHTT-------CEEEEEEEGGGTCSSCS--------EEEEEECSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcC-------CCCeEEEEcCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcC
Confidence 33455555555542 22446788899998887 4444443456789999999999999998864
No 74
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=43.30 E-value=41 Score=28.16 Aligned_cols=81 Identities=6% Similarity=0.008 Sum_probs=50.8
Q ss_pred cccCCHHHHHHHHHHHHHhHHHhhhhcCCCCeEEEEccccCC----------CCCCCCceEEEEeee-ccCChhHHHHHH
Q 017090 212 LKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAPVE-EIGDGDRLLHAC 280 (377)
Q Consensus 212 Lgl~~~~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l~Gl~~F----------~~dp~~~rVLya~v~-~~~~~~~L~~l~ 280 (377)
+..+++++.......+..+...+.+.++...+.+-.-|-..| .+|+.-|..+|.... ..-+.+.|.+++
T Consensus 47 l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~aGq~V~HlH~HvIPR~~~D~~~~~~vw~~~~~~~~~~eel~~~a 126 (149)
T 3i24_A 47 IHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQLV 126 (149)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCSTTCSCCCBCCHHHHHHHH
T ss_pred hhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhhhhCCCCEEEEEEeCCccCCCCCCcceecCCCCCCCCHHHHHHHH
Confidence 456678887777777777777776666555566655554444 234444444453211 112357899999
Q ss_pred HHHHHHHHHCCC
Q 017090 281 QVIIDAFNEAGL 292 (377)
Q Consensus 281 ~~l~~~f~~~Gl 292 (377)
+.|+.++...|.
T Consensus 127 ~kIr~~L~~~~~ 138 (149)
T 3i24_A 127 DLLRDKLSNISG 138 (149)
T ss_dssp HHHHHHHTTSTT
T ss_pred HHHHHHHHhccc
Confidence 999999977544
No 75
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=42.60 E-value=29 Score=29.81 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=26.3
Q ss_pred CCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcccccCCCCeeeeEEe
Q 017090 256 SKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATL 308 (377)
Q Consensus 256 dp~~~rVLya~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~~~r~fkpHiTL 308 (377)
.+..-+-+|+-+ +.+-.+.|.++.+.+...+ |. .++.|||||
T Consensus 4 ~~~~~~~f~~~p-p~~~~~~l~~~~~~l~~~~---~~-------~~~~~HiTL 45 (189)
T 1jh6_A 4 VKKDVYSVWALP-DEESEPRFKKLMEALRSEF---TG-------PRFVPHVTV 45 (189)
T ss_dssp CCCEEEEEEEEE-CTTTHHHHHHHHHHHHHHH---TC-------CCCCCCEEE
T ss_pred CCCCcEEEEEEC-CHHHHHHHHHHHHHHHHHc---CC-------CCCCCEEEE
Confidence 344557777766 4344456777777665532 22 357999999
No 76
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=42.06 E-value=41 Score=30.78 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=26.4
Q ss_pred cCCCcceEEeecccc-CCHHHHHHHHHHHHHhHHHhh
Q 017090 200 IKPKTFHLTVLMLKL-WNKDRVNAATNVLKSISSKVM 235 (377)
Q Consensus 200 v~p~~LHLTL~fLgl-~~~~~v~~a~~~L~~i~~~i~ 235 (377)
...-++||||++++. .++++......+|+++.+.+.
T Consensus 174 hd~y~fHITLgY~~~~l~~ee~~~~~~~l~~~~~~l~ 210 (243)
T 2fsq_A 174 HDTYEFHITLSYIVSWFEPECLPRWQAMLDEELEKLR 210 (243)
T ss_dssp GGGCCEEEECEEESSCBCGGGHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 346789999999985 456667777777877766554
No 77
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=40.05 E-value=38 Score=30.54 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=30.1
Q ss_pred hCcEEEcCCCCCCCcEEEEe-CCHHHHHHHHHHHHHHHHhhhc
Q 017090 46 MGVKIILPSSKKEDSIIIEG-NSTDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 46 t~~~I~ip~~~~~~~v~I~g-~~~~~v~~A~~~I~~iv~~~~~ 87 (377)
.++.+-|=. +|.|+||| .+.+.+..|.+.|..++.+.++
T Consensus 178 pkvt~lIF~---SGKiviTGaks~~d~~~A~~~I~p~L~~frk 217 (218)
T 3eik_A 178 PKIVLLIFV---SGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 217 (218)
T ss_dssp TTEEEEECT---TSEEEEEEESSHHHHHHHHHHHHHHHHHTBC
T ss_pred CCEEEEEeC---CCeEEEEecCCHHHHHHHHHHHHHHHHHhhc
Confidence 345554433 79999999 4789999999999999987553
No 78
>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, phospho lyase, secreted, virulence, structural genomics; 2.70A {Shigella flexneri}
Probab=38.59 E-value=1.4e+02 Score=26.36 Aligned_cols=89 Identities=10% Similarity=0.243 Sum_probs=54.4
Q ss_pred CcceEEeeccccCCHHHHHHHHHHHHHhHHHhhhhcCCCCe-EEEEccccCCCCCCCCce-------EEEEeeeccCC--
Q 017090 203 KTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPL-FIRLKGLDLMRGSKDKAR-------ILYAPVEEIGD-- 272 (377)
Q Consensus 203 ~~LHLTL~fLgl~~~~~v~~a~~~L~~i~~~i~~~l~~~p~-~l~l~Gl~~F~~dp~~~r-------VLya~v~~~~~-- 272 (377)
+++||.+ ..+++..|.++|..+.-. ...|+ +-.+..+..-. .+.| .||+++...+.
T Consensus 80 DK~HiSV------~~~qv~~AF~ai~~LL~S-----eDSPvDKWKVTDM~rv~---~qsRV~~GAQfTLY~Kpd~eds~Y 145 (218)
T 3i0u_A 80 DKFHISI------AREQVPLAFQILSGLLFS-----EDSPIDKWKITDMNRVS---QQSRVGIGAQFTLYVKSDQECSQY 145 (218)
T ss_dssp EEEEECB------CGGGHHHHHHHHHHHHTC-----TTCSCSEEEEECTTTCC-------CCSSCCEEEEEECCSSTTCC
T ss_pred ceEEEEe------cHHHHHHHHHHHHHHhcC-----CCCCcceeeecccccCc---chhhhcccceEEEEecCccccccC
Confidence 6889865 468999999999887311 22333 33444444332 2223 39999887542
Q ss_pred ----hhHHHHHHHHHHHHHHHCCCcccccCCCCeeee
Q 017090 273 ----GDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLH 305 (377)
Q Consensus 273 ----~~~L~~l~~~l~~~f~~~Gl~~~~~~~r~fkpH 305 (377)
..+...+...|+..|.++|+.+.+.....+.|+
T Consensus 146 s~~~l~k~r~fi~~iE~~L~~agi~pg~~P~SDV~p~ 182 (218)
T 3i0u_A 146 SALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPE 182 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTCBCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCcc
Confidence 335666778899999999998743222335553
No 79
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=38.26 E-value=29 Score=29.09 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=39.4
Q ss_pred cCCCchhHHHHHHHhCcEEE-------cCCC-------------CCCCcEEEEeC----CHHHHHHHHHHHHHHHHhhhc
Q 017090 32 KGKEGSTQKKFEKEMGVKII-------LPSS-------------KKEDSIIIEGN----STDSVAKASEKIQAIIAEAVE 87 (377)
Q Consensus 32 IG~~G~tik~ie~et~~~I~-------ip~~-------------~~~~~v~I~g~----~~~~v~~A~~~I~~iv~~~~~ 87 (377)
=||||-++++ -+|.|++. +|.. ..+|.|+|.+. ...+-+.|.+++.+++.++..
T Consensus 23 sGpGGQnVNK--v~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a~~ 100 (140)
T 4dh9_Y 23 QGAGGQHVNK--TSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTT 100 (140)
T ss_dssp CSSSSHHHHT--TCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcccc--ccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 4999999986 46777777 4530 01466888883 347889999999999988654
No 80
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=37.13 E-value=1.3e+02 Score=27.57 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=48.0
Q ss_pred ceEEeeccccCCHHHHHHHHHHHHHhHHHhhhhcCCCCeEEEEccccCCCCCCCCceEEEEeeeccCChhHHHHHHHHHH
Q 017090 205 FHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVII 284 (377)
Q Consensus 205 LHLTL~fLgl~~~~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l~Gl~~F~~dp~~~rVLya~v~~~~~~~~L~~l~~~l~ 284 (377)
..+++.+=. +.+++++.+.|.++.......+..++..+.+.+++-..= ..+ +++-+...+-...-.++...+.
T Consensus 186 ~~~~v~v~y---~~d~~~v~~~l~~~~~~~~~vl~~p~p~v~v~~~~~~~i---~~~-v~~~~~~~~~~~~~~~l~~~i~ 258 (286)
T 2vv5_A 186 NEFIIGVAY---DSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSI---NFV-VRVWSNSGDLQNVYWDVLERIK 258 (286)
T ss_dssp EEEEEEECT---TSCHHHHHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSE---EEE-EEEEEETTTHHHHHHHHHHHHH
T ss_pred EEEEEEEcC---CCCHHHHHHHHHHHHHhCcccccCCCCEEEEEEecCCeE---EEE-EEEEEccchHHHHHHHHHHHHH
Confidence 344444433 445677777777765444344555667888877753221 112 2333333222334456778889
Q ss_pred HHHHHCCCcc
Q 017090 285 DAFNEAGLVF 294 (377)
Q Consensus 285 ~~f~~~Gl~~ 294 (377)
++|.+.|+..
T Consensus 259 ~~~~~~gI~i 268 (286)
T 2vv5_A 259 REFDAAGISF 268 (286)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHCCCcC
Confidence 9999999976
No 81
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=36.20 E-value=10 Score=34.40 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=30.2
Q ss_pred eEEEEEeCccccccccCCCchhHHHHHHHhCcEEEc
Q 017090 17 SVLDMQVGASVIRFIKGKEGSTQKKFEKEMGVKIIL 52 (377)
Q Consensus 17 ~~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~I~i 52 (377)
..+.+.|..+-.+.|||+.|.|+..||.=++.-++-
T Consensus 92 ~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~ 127 (225)
T 3gku_A 92 KEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNK 127 (225)
T ss_dssp TEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHh
Confidence 356777878889999999999999999988865554
No 82
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=33.90 E-value=24 Score=33.99 Aligned_cols=45 Identities=24% Similarity=0.155 Sum_probs=35.0
Q ss_pred ceeccccceEEEEEeC-----ccccccccCCCchhHHHHHHHh-CcEEEcC
Q 017090 9 KFIDLISLSVLDMQVG-----ASVIRFIKGKEGSTQKKFEKEM-GVKIILP 53 (377)
Q Consensus 9 ~~~~~~~~~~~~i~Vp-----~~~~~~iIG~~G~tik~ie~et-~~~I~ip 53 (377)
+-|+|.+++.-.+-|- -+-+|..||++|..++.+.+|. |-+|+|-
T Consensus 223 ~~iaRepG~R~KiAV~s~d~~iDpvGacvg~~G~ri~~i~~el~ge~Idii 273 (344)
T 1hh2_P 223 KAIAREPGVRTKVAVASNDPNVDPIGACIGEGGSRIAAILKELKGEKLDVL 273 (344)
T ss_dssp EEEEEETTTEEEEEEEESSTTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEE
T ss_pred EEeecccccccceeEEccCCCccccceeeccCCcEeHHHHHHhCCCeeeEE
Confidence 4577888875555443 2568999999999999999998 7787774
No 83
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=33.74 E-value=14 Score=34.40 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=26.0
Q ss_pred EEEEEeCcccc-ccccCCCchhHHH--------HHHHhCcEEEc
Q 017090 18 VLDMQVGASVI-RFIKGKEGSTQKK--------FEKEMGVKIIL 52 (377)
Q Consensus 18 ~~~i~Vp~~~~-~~iIG~~G~tik~--------ie~et~~~I~i 52 (377)
...+.|..+-+ +.|||++|++||+ ||+-+|++|.+
T Consensus 241 ~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 241 KGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 45667777644 5689999999987 56667777776
No 84
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=33.17 E-value=88 Score=25.93 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhHHHhhhhcCCCCeEEEEccccCCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 017090 217 KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 294 (377)
Q Consensus 217 ~~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l~Gl~~F~~dp~~~rVLya~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~ 294 (377)
++-++.+.++|.+-+ ...-..|.++|+..+-+ |.-+....+...++.+++.|.+.+.+.|+.+
T Consensus 20 ~~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIatg~S~rqv~Aiad~v~~~lk~~g~~~ 82 (136)
T 3ups_A 20 EMLLKLVTDSLDDDQ-------ALEIATIPLAGKSSIAD--------YMVIASGRSSRQVTAMAQKLADRIKAATGYV 82 (136)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEECTTTCSSCS--------EEEEEECSSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHcC-------CCCeEEEECCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 344556666665542 22446788899998887 4444433345789999999999999887653
No 85
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=31.69 E-value=1.6e+02 Score=26.13 Aligned_cols=93 Identities=13% Similarity=0.228 Sum_probs=56.7
Q ss_pred CCCcceEEeeccccCCHHHHHHHHHHHHHhHHHhhhhcCCCCe-EEEEccccCCCCCCCCc-----eEEEEeeeccCC--
Q 017090 201 KPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPL-FIRLKGLDLMRGSKDKA-----RILYAPVEEIGD-- 272 (377)
Q Consensus 201 ~p~~LHLTL~fLgl~~~~~v~~a~~~L~~i~~~i~~~l~~~p~-~l~l~Gl~~F~~dp~~~-----rVLya~v~~~~~-- 272 (377)
--+++||.+ ..+++..|.++|..+--. ...|+ +-.+..+..-.. -+++ =.||+++...+.
T Consensus 80 aGDKfHiSV------~~~qv~~AF~al~~LL~S-----eDSPvDKWKVTDM~rv~~-qsRV~~GAQfTLY~Kpd~edsqY 147 (220)
T 3bo6_A 80 AGDKFHISV------QREQVPQAFQALSGLLFS-----VDSPIDKWKVTDMERVDQ-QSRVAVGAQFTLYVKPDQENSQY 147 (220)
T ss_dssp CSEEEEECB------CGGGHHHHHHHHHHHHTC-----TTCSCSEEEEECTTTBCT-TSTTTSSCCEEEECCCSSTTSCC
T ss_pred cCceEEEEe------cHHHHHHHHHHHHHhhcC-----CCCCcceeeeccccccch-hhhhcccceEEEEecCccccccC
Confidence 357899875 468899999999887311 22343 344444443322 1111 249999876542
Q ss_pred ----hhHHHHHHHHHHHHHHHCCCcccccCCCCeeee
Q 017090 273 ----GDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLH 305 (377)
Q Consensus 273 ----~~~L~~l~~~l~~~f~~~Gl~~~~~~~r~fkpH 305 (377)
..+...+...|+..|.++|+.+.+.....+.|+
T Consensus 148 s~~~l~k~r~fi~~lE~~L~~aGi~pg~~P~SDV~p~ 184 (220)
T 3bo6_A 148 SASSLHNTRQFIECLESRLSESGLMPGQYPESDVHPE 184 (220)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTCBCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCcc
Confidence 335566778899999999998743222335554
No 86
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=30.72 E-value=1.3e+02 Score=24.56 Aligned_cols=79 Identities=5% Similarity=-0.011 Sum_probs=48.6
Q ss_pred ccccCCHHHHHHHHHHHHHhHHHhhhhcCCCCeEEEEccccCC----------CCCCCCceEEEEe-eeccCChhHHHHH
Q 017090 211 MLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAP-VEEIGDGDRLLHA 279 (377)
Q Consensus 211 fLgl~~~~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l~Gl~~F----------~~dp~~~rVLya~-v~~~~~~~~L~~l 279 (377)
-+..+++++.......+..+...+.+.++...+.+-.-|-..| .+|+.-|...|.. ....-+.+.|.++
T Consensus 46 ~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~aGq~V~HlH~HviPR~~~D~~~p~~vw~~~~~~~~~~eel~~~ 125 (137)
T 3ohe_A 46 EIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVAALGNMVPQLHLHHIVRYQGDPAWPGPVWGKQPPVPYTEEQQASV 125 (137)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCCTTSSCCCCCCHHHHHHH
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeccCcCCEEEEEEeCCCCCCCCCCcccccCCCCCCCCHHHHHHH
Confidence 3456678888878888888777777665555555554443333 2344444445532 1111234789999
Q ss_pred HHHHHHHHHH
Q 017090 280 CQVIIDAFNE 289 (377)
Q Consensus 280 ~~~l~~~f~~ 289 (377)
++.|+..+.+
T Consensus 126 ~~~ir~~L~~ 135 (137)
T 3ohe_A 126 KAKLQPLLEQ 135 (137)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 87
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=30.01 E-value=51 Score=28.67 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=25.3
Q ss_pred CCcEEEEeC-CHHHHHHHHHHHHHHHHhhh
Q 017090 58 EDSIIIEGN-STDSVAKASEKIQAIIAEAV 86 (377)
Q Consensus 58 ~~~v~I~g~-~~~~v~~A~~~I~~iv~~~~ 86 (377)
+|.|+|+|. +.+.+.+|.+.|..++.+.+
T Consensus 149 SGkivitGak~~~~~~~a~~~i~p~L~~~~ 178 (180)
T 1ytb_A 149 SGKIVLTGAKQREEIYQAFEAIYPVLSEFR 178 (180)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHHHHHTB
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 799999995 78899999999999987644
No 88
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=28.30 E-value=76 Score=27.54 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=27.2
Q ss_pred CcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHH
Q 017090 47 GVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 82 (377)
Q Consensus 47 ~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv 82 (377)
|+++.+|. ...|+|+|.+.+.|-+..+.|++.-
T Consensus 120 gv~v~v~~---~t~Iil~G~Dke~Vgq~AA~Ir~~r 152 (180)
T 3v2d_H 120 GITFEVPE---PTRVRVSGIDKQKVGQVAANIRAIR 152 (180)
T ss_dssp TCEEECSS---TTEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CeEEEECC---CCEEEEEECcHHHHHHHHHHhcccC
Confidence 66777775 3689999999999999999998653
No 89
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=28.14 E-value=73 Score=27.84 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=26.9
Q ss_pred hCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHH
Q 017090 46 MGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 81 (377)
Q Consensus 46 t~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~i 81 (377)
.|+++.+|. ...|+|+|.|.+.|-+..+.|+++
T Consensus 119 ~gI~v~v~~---~t~I~l~G~DKq~Vgq~AA~Ir~~ 151 (185)
T 2zjr_E 119 AGVTFAVPE---PTRIDVSGIDKQLVGQVAANVRKV 151 (185)
T ss_dssp TTEEEECSS---TTEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCeEEEECC---CCEEEEEecCHHHHHHHHHHHhcc
Confidence 366777775 367999999999999999998854
No 90
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.67 E-value=97 Score=27.00 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=27.4
Q ss_pred CcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHH
Q 017090 47 GVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIA 83 (377)
Q Consensus 47 ~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv~ 83 (377)
|+++.+|. ..|.|+|.+.+.|-+..+.|+....
T Consensus 127 gv~v~v~~----~~Iil~G~Dke~Vgq~AA~Ir~~~~ 159 (184)
T 3j21_F 127 GVTVKVRG----QEIIVEGIDKEAVGQTAANIEQATR 159 (184)
T ss_dssp TEEEEEET----TEEEEEESCHHHHHHHHHHHHHHHC
T ss_pred CeEEEecC----CEEEEEECCHHHHHHHHHHHhhccc
Confidence 56666664 3899999999999999999998775
No 91
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=26.59 E-value=19 Score=33.60 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=23.6
Q ss_pred EEEEeCccc-cccccCCCchhHHHH--------HHHhCcEEEc
Q 017090 19 LDMQVGASV-IRFIKGKEGSTQKKF--------EKEMGVKIIL 52 (377)
Q Consensus 19 ~~i~Vp~~~-~~~iIG~~G~tik~i--------e~et~~~I~i 52 (377)
..+.|..+- -+.|||++|+++|+| |+-.|+++..
T Consensus 232 ~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 232 AILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 355666544 468999999999975 4555666655
No 92
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=25.87 E-value=82 Score=28.69 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=29.0
Q ss_pred CcEEEcCCCCCCCcEEEEeC-CHHHHHHHHHHHHHHHHhhh
Q 017090 47 GVKIILPSSKKEDSIIIEGN-STDSVAKASEKIQAIIAEAV 86 (377)
Q Consensus 47 ~~~I~ip~~~~~~~v~I~g~-~~~~v~~A~~~I~~iv~~~~ 86 (377)
++.+-|=. +|.|+|+|. +.+.+.+|.+.|..++.+.+
T Consensus 201 kvvllIF~---SGKIviTGaK~~~~~~~Ai~~i~p~L~~~~ 238 (240)
T 1rm1_A 201 KIVLLIFV---SGKIVLTGAKQREEIYQAFEAIYPVLSEFR 238 (240)
T ss_dssp TEEEEECT---TSEEEEEEESSHHHHHHHHHHHHHHHHHTB
T ss_pred cEEEEEec---CCEEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 45555533 799999995 78999999999999987644
No 93
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=25.59 E-value=2.1e+02 Score=23.08 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=32.0
Q ss_pred ccCCCcceEEeeccccCCHHHHHHHHHHHHHhHHHhhhhcCCCCeEEEE
Q 017090 199 FIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRL 247 (377)
Q Consensus 199 ~v~p~~LHLTL~fLgl~~~~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l 247 (377)
++-|.+ |+ .-+..++++++.....+++.+...+...+...++.+-+
T Consensus 37 LViPk~-h~--~~~~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~ni~~ 82 (147)
T 1fit_A 37 LVCPLR-PV--ERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSM 82 (147)
T ss_dssp EEEESS-CC--SSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred EEEEcc-cc--CChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 444444 64 34456788888888888888877776666666777766
No 94
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=24.36 E-value=34 Score=31.32 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=23.6
Q ss_pred EEEEEeCccccccccCCCchhHHHHHHHhC
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMG 47 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~ie~et~ 47 (377)
...|.|-..+-|.|||++|+.+++|.++-.
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 77 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFLQ 77 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHHH
Confidence 456666677889999999999998776644
No 95
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=24.28 E-value=1.1e+02 Score=26.55 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=29.0
Q ss_pred CcEEEcCCCCCCCcEEEEe-CCHHHHHHHHHHHHHHHHhh
Q 017090 47 GVKIILPSSKKEDSIIIEG-NSTDSVAKASEKIQAIIAEA 85 (377)
Q Consensus 47 ~~~I~ip~~~~~~~v~I~g-~~~~~v~~A~~~I~~iv~~~ 85 (377)
++.+-|=+ +|.|++|| .+.+.+..|.++|..++.+.
T Consensus 50 k~~~lIF~---SGKiv~TGaks~e~~~~a~~~i~~~L~~l 86 (180)
T 1ytb_A 50 KTTALIFA---SGKMVVTGAKSEDDSKLASRKYARIIQKI 86 (180)
T ss_dssp TEEEEECT---TSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEC---CCeEEEEecCCHHHHHHHHHHHHHHHHHc
Confidence 45555544 79999999 68899999999998888764
No 96
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=24.02 E-value=67 Score=27.80 Aligned_cols=32 Identities=16% Similarity=0.485 Sum_probs=25.4
Q ss_pred CcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHH
Q 017090 47 GVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 81 (377)
Q Consensus 47 ~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~i 81 (377)
|+++.+|. ...|+|+|.+.+.|-+..+.|+++
T Consensus 119 gv~v~v~~---~t~Iil~G~Dke~Vgq~AA~Ir~~ 150 (176)
T 3r8s_G 119 GITAECPT---QTEIVLKGADKQVIGQVAADLRAY 150 (176)
T ss_dssp TCEEEEEE---TTEEEEEESCHHHHHHHHHHHHHT
T ss_pred CeEEEECC---CCEEEEEECcHHHHHHHHHHhhcc
Confidence 55666664 467999999999999999888853
No 97
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=23.92 E-value=83 Score=27.49 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.6
Q ss_pred CCcEEEEeC-CHHHHHHHHHHHHHHHHhh
Q 017090 58 EDSIIIEGN-STDSVAKASEKIQAIIAEA 85 (377)
Q Consensus 58 ~~~v~I~g~-~~~~v~~A~~~I~~iv~~~ 85 (377)
+|.|+|||. +.+.+..|.+.|..++.+.
T Consensus 157 SGKiviTGaks~~~~~~A~~~i~~~L~~~ 185 (188)
T 2z8u_A 157 SGKVVITGLKSEEDAKRALKKILDTIKEV 185 (188)
T ss_dssp TSEEEEESCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 799999995 8899999999999888763
No 98
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=23.26 E-value=96 Score=26.91 Aligned_cols=27 Identities=19% Similarity=0.243 Sum_probs=23.4
Q ss_pred CCcEEEEeC-CHHHHHHHHHHHHHHHHh
Q 017090 58 EDSIIIEGN-STDSVAKASEKIQAIIAE 84 (377)
Q Consensus 58 ~~~v~I~g~-~~~~v~~A~~~I~~iv~~ 84 (377)
+|.|+|||. +.+.+..|.+.|..++.+
T Consensus 153 SGKiviTGaks~~~~~~a~~~i~~~L~~ 180 (182)
T 1ais_A 153 SGKIVCSGAKSEADAWEAVRKLLRELDK 180 (182)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 799999995 889999999999887754
No 99
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=22.58 E-value=79 Score=28.28 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=25.8
Q ss_pred hCcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHH
Q 017090 46 MGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 81 (377)
Q Consensus 46 t~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~i 81 (377)
.|+++.+|. ...|+|+|.+.+.|-+..+.|+++
T Consensus 146 ~GI~v~v~~---~t~Iiv~GiDKq~VGq~AA~IR~~ 178 (212)
T 1nkw_E 146 AGVTFAVPE---PTRIDVSGIDKQLVGQVAANVRKV 178 (212)
T ss_pred CCeEEEeCC---CCEEEEEeCCHHHHHHHHHHHhcc
Confidence 356666665 367999999999999999888743
No 100
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=22.31 E-value=1.1e+02 Score=26.93 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=25.3
Q ss_pred CCcEEEEeC-CHHHHHHHHHHHHHHHHhhh
Q 017090 58 EDSIIIEGN-STDSVAKASEKIQAIIAEAV 86 (377)
Q Consensus 58 ~~~v~I~g~-~~~~v~~A~~~I~~iv~~~~ 86 (377)
+|.|+|||. +.+.+..|.+.|..++.+..
T Consensus 157 SGKiviTGaks~~~~~~A~~~i~~~L~~~~ 186 (198)
T 1mp9_A 157 SGKMVITGAKREDEVHKAVKKIFDKLVELD 186 (198)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHHHhC
Confidence 799999994 88999999999999887743
No 101
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=21.84 E-value=37 Score=31.07 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=23.5
Q ss_pred EEEEEeCccccccccCCCchhHHHHHHHhCcE
Q 017090 18 VLDMQVGASVIRFIKGKEGSTQKKFEKEMGVK 49 (377)
Q Consensus 18 ~~~i~Vp~~~~~~iIG~~G~tik~ie~et~~~ 49 (377)
...|.|-..+=|.|||++|+.+++|..+-.-.
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l~k~ 76 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLVQKR 76 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHH
Confidence 34556666778999999999998876654433
No 102
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=21.43 E-value=1.9e+02 Score=24.01 Aligned_cols=77 Identities=9% Similarity=0.037 Sum_probs=43.8
Q ss_pred cccCCHHHHHHHHHHHHHhHHHhhhhcCCCCeEEEEccccCC----------CCCCCCceEEEEeee-ccCChhHHHHHH
Q 017090 212 LKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAPVE-EIGDGDRLLHAC 280 (377)
Q Consensus 212 Lgl~~~~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l~Gl~~F----------~~dp~~~rVLya~v~-~~~~~~~L~~l~ 280 (377)
+..+++++......+++.+...+...++...+.+..-|-..| .+|+.-|..+|.... ..-+.+.|.+++
T Consensus 52 l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~~aGq~V~HlH~HvIPR~~~D~~~p~pvw~~~~~~~~~~eel~~~a 131 (149)
T 3i4s_A 52 IIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIAALGNLVPQLHVHIIARRTGDAAWPRPVWGVMQPLAHDATEVQNFI 131 (149)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCCTTTSCCCCCCHHHHHHHH
T ss_pred hhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecCCcCCEEEEEEECCcCCCCCCCccccCCCcCCCCCHHHHHHHH
Confidence 345567777777777777766666555444455544443333 334444444453111 111346799999
Q ss_pred HHHHHHHH
Q 017090 281 QVIIDAFN 288 (377)
Q Consensus 281 ~~l~~~f~ 288 (377)
+.|++.+.
T Consensus 132 ~~Ir~~L~ 139 (149)
T 3i4s_A 132 SALRRKIW 139 (149)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99987653
No 103
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.26 E-value=39 Score=30.22 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=20.2
Q ss_pred EEEEeCccccccccCCCchhHHHHHHH
Q 017090 19 LDMQVGASVIRFIKGKEGSTQKKFEKE 45 (377)
Q Consensus 19 ~~i~Vp~~~~~~iIG~~G~tik~ie~e 45 (377)
..+.|-..+-|.|||++|+.+++|.++
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 345555567789999999999886554
No 104
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=21.02 E-value=1.4e+02 Score=24.15 Aligned_cols=75 Identities=8% Similarity=-0.063 Sum_probs=42.8
Q ss_pred cccCCHHHHHHHHHHHHHhHHHhhhhcCCCCeEEEEccccCC----------CCCCCCceEEEEeeec-cCChhHHHHHH
Q 017090 212 LKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAPVEE-IGDGDRLLHAC 280 (377)
Q Consensus 212 Lgl~~~~~v~~a~~~L~~i~~~i~~~l~~~p~~l~l~Gl~~F----------~~dp~~~rVLya~v~~-~~~~~~L~~l~ 280 (377)
+..+++++.......+..+...+.+.++...+.+-.-|=..| .+|+.-|..+|..... .-+.+.+.+++
T Consensus 49 l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~aGq~V~HlH~HviPR~~~D~~~~~~~~~~~~~~~~~~~el~~~a 128 (135)
T 3nrd_A 49 VFELTPLDQAMLTFETNLVAAGLKKATGAEKINIGALGNIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWPEEEHRTFA 128 (135)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCSTTCSCCCCCCHHHHHHHH
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccCCCCEEEEEEecCCCCCCCCCCcccCCCCCCCCCHHHHHHHH
Confidence 445677887777777877776676655545455543333322 3344444445532111 12346788888
Q ss_pred HHHHHH
Q 017090 281 QVIIDA 286 (377)
Q Consensus 281 ~~l~~~ 286 (377)
+.|+++
T Consensus 129 ~~i~~~ 134 (135)
T 3nrd_A 129 ARIMEN 134 (135)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 888765
No 105
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=20.89 E-value=1.2e+02 Score=26.46 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=27.9
Q ss_pred CcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHHHH
Q 017090 47 GVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 82 (377)
Q Consensus 47 ~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~iv 82 (377)
|+++.+|.+. ...|.|+|.+.+.|-+..+.|++..
T Consensus 129 gv~v~v~~~~-k~eIil~G~Dke~Vgq~AA~Ir~~~ 163 (188)
T 4a17_E 129 GVKISRKDEE-KNTLTLQGIDLNNVSQTCALIHQSC 163 (188)
T ss_dssp TCEEECCTTS-SSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCC-CCEEEEEEcCHHHHHHHHHHHHhhc
Confidence 6677776521 1579999999999999999999876
No 106
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=20.81 E-value=26 Score=31.34 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=23.0
Q ss_pred EEEeCccccccccCCCchhHHHHH----HHhCcEEEc
Q 017090 20 DMQVGASVIRFIKGKEGSTQKKFE----KEMGVKIIL 52 (377)
Q Consensus 20 ~i~Vp~~~~~~iIG~~G~tik~ie----~et~~~I~i 52 (377)
.+.|-..+-+.|||++|+.+++|. +.|+..+.|
T Consensus 64 ~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 64 RVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp CCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 444555667899999999988755 456655444
No 107
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=20.39 E-value=71 Score=27.69 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=24.9
Q ss_pred CcEEEcCCCCCCCcEEEEeCCHHHHHHHHHHHHH
Q 017090 47 GVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 80 (377)
Q Consensus 47 ~~~I~ip~~~~~~~v~I~g~~~~~v~~A~~~I~~ 80 (377)
|+++.+|. ...|+|+|.+.+.|-+..+.|++
T Consensus 119 gi~v~v~~---~t~I~v~G~Dkq~Vgq~AA~Ir~ 149 (177)
T 1rl6_A 119 GLEIEVPS---QTKIIVKGADKQRVGELAANIRA 149 (177)
T ss_dssp TEEEEEEE---TTEEEEEESCHHHHHHHHHHHHT
T ss_pred CcEEEECC---CCEEEEEeCCHHHHHHHHHHHhc
Confidence 56666664 36799999999999999988873
No 108
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.24 E-value=30 Score=31.17 Aligned_cols=28 Identities=0% Similarity=0.069 Sum_probs=20.5
Q ss_pred EEEeCccccccccCCCchhHHHHHHHhC
Q 017090 20 DMQVGASVIRFIKGKEGSTQKKFEKEMG 47 (377)
Q Consensus 20 ~i~Vp~~~~~~iIG~~G~tik~ie~et~ 47 (377)
.+.|-..+-+.|||++|+.+++|.++-.
T Consensus 73 ~I~I~~~rPg~vIGk~g~~i~~L~~~l~ 100 (218)
T 3bbn_C 73 QVIIHMGFPKLLIENRPQGVEDLKINVQ 100 (218)
T ss_dssp CCEEEESCTTTTSCSSSCTTHHHHHHHH
T ss_pred EEEEEecCCCcEecCCcHHHHHHHHHHH
Confidence 3444456678999999999988766543
Done!